Psyllid ID: psy16780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MDIYWMKSSLVCLVLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYYSK
Secondary Structure (PSIPRED)
cccccccccHHHcccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHcccccEEEEEcccHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHccccEEEEEccccccHHHHHHHHHcccEEEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHccccccHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHcccEEEccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHEcccccccc
Coil and Loop (DISEMBL)
MDIYWMKSSLVCLVLSQYLLANfsgklsqlsntsdssSLLAYITSQLdetinwsdVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVsnhggrqldyvpaSIEALPEIAKAVGHKVdvyldggvrygTDVFKALALGAKMVFvgrpalwglahsgksgVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYYSK
Flexible Loop (DISEMBL)
MDIYWMKSSLVCLVLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYYSK
Low Complexity Region (SEG)
MDIYWMKSSLVCLVLSQYLLANFSGKlsqlsntsdsssllAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYYSK
Disordered region (IsUnstruct)
**IYWMKSSLVCLVLSQYLLANFSGKLS*********SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY***
Disordered Region (DISOPRED)
MDIYWMKSSLVCLVLSQYLLANF******************YITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV*******
Disordered Region (DISEMBL)
MDIYWMKSSLVCLVLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYYSK
Disordered Region (DISPRO)
*DIYWMKSSLVCLVLSQYLLANFSGKLSQ*****DSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDIYWMKSSLVCLVLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYYSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q6YT73	369	Peroxisomal (S)-2-hydroxy	yes	N/A	0.910	0.498	0.550	5e-54
B8B7C5	369	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.910	0.498	0.550	5e-54
Q9LRR9	367	Peroxisomal (S)-2-hydroxy	no	N/A	0.876	0.482	0.553	1e-53
O49506	368	Peroxisomal (S)-2-hydroxy	no	N/A	0.846	0.464	0.578	3e-53
Q9LRS0	367	Peroxisomal (S)-2-hydroxy	no	N/A	0.876	0.482	0.541	6e-53
Q10CE4	369	Peroxisomal (S)-2-hydroxy	no	N/A	0.881	0.482	0.546	2e-52
B8AKX6	369	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.881	0.482	0.546	2e-52
Q7FAS1	367	Peroxisomal (S)-2-hydroxy	no	N/A	0.886	0.487	0.535	3e-52
B8AUI3	367	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.886	0.487	0.535	3e-52
P05414	369	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.896	0.490	0.532	1e-51

>sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 139/187 (74%), Gaps = 3/187 (1%)

Query: 13  LVLSQYL-LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
            VL  +L L NF G +L ++   SDS  L +Y+  Q+D T++W DV WL+TIT LPI++K
Sbjct: 173 FVLPPFLTLKNFEGLELGKMDQASDSG-LASYVAGQIDRTLSWKDVKWLQTITTLPILVK 231

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G++TAED ++ VE GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR 
Sbjct: 232 GVITAEDTRLAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRR 291

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTDVFKALALGA  VF+GRP ++ LA +G++GVR VL +L +EF+  +ALSGCTS+ +I 
Sbjct: 292 GTDVFKALALGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADIT 351

Query: 191 REMVVHE 197
           R  V+ E
Sbjct: 352 RNHVITE 358

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5

>sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 139/187 (74%), Gaps = 3/187 (1%)

Query: 13  LVLSQYL-LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
            VL  +L L NF G +L ++   SDS  L +Y+  Q+D T++W DV WL+TIT LPI++K
Sbjct: 173 FVLPPFLTLKNFEGLELGKMDQASDSG-LASYVAGQIDRTLSWKDVKWLQTITTLPILVK 231

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G++TAED ++ VE GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR 
Sbjct: 232 GVITAEDTRLAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRR 291

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTDVFKALALGA  VF+GRP ++ LA +G++GVR VL +L +EF+  +ALSGCTS+ +I 
Sbjct: 292 GTDVFKALALGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADIT 351

Query: 191 REMVVHE 197
           R  V+ E
Sbjct: 352 RNHVITE 358

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 133/179 (74%), Gaps = 2/179 (1%)

Query: 20  LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           L NF G  L ++   +DS  L +Y+  Q+D T++W DV WL+TITKLPI++KG+LT EDA
Sbjct: 180 LKNFEGLDLGKMDEANDSG-LASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDA 238

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
           +I ++ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GTDVFKAL
Sbjct: 239 RIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 298

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           ALGA  +F+GRP ++ LA  G++GVRKVL +L +EF+  +ALSGC S+ EI R  +  E
Sbjct: 299 ALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1

 Score =  208 bits (529), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/173 (57%), Positives = 135/173 (78%), Gaps = 2/173 (1%)

Query: 20  LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           L NF G  L ++  T+DS  L +Y+  Q+D++++W D+ WL++IT LPI++KG++TAEDA
Sbjct: 180 LKNFEGLDLGKIDKTNDSG-LASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDA 238

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
           +I VE GA+ I+VSNHG RQLDYVPA+I AL E+ KAV  ++ V+LDGGVR GTDVFKAL
Sbjct: 239 RIAVEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKAL 298

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           ALGA  VFVGRP+L+ LA  G++GVRK+L +L +EF+  +ALSGC S+ EI R
Sbjct: 299 ALGASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISR 351

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1

 Score =  206 bits (525), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 133/179 (74%), Gaps = 2/179 (1%)

Query: 20  LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           L NF G  L ++   +DS  L +Y+  Q+D T++W D+ WL+TIT +PI++KG+LT EDA
Sbjct: 180 LKNFEGLDLGKMDEANDSG-LASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDA 238

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
           +I ++ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   +V V+LDGGVR GTDVFKAL
Sbjct: 239 RIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKAL 298

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           ALGA  +F+GRP ++ LA  G++GV+KVL +L +EF+  +ALSGC S+ EI R  +V E
Sbjct: 299 ALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTE 357

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 134/181 (74%), Gaps = 3/181 (1%)

Query: 13  LVLSQYL-LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
            VL  YL L NF G  L+++  ++DS  L +Y+  Q+D T++W DV WL++IT LPI++K
Sbjct: 173 FVLPPYLTLKNFEGLDLAEMDKSNDSG-LASYVAGQIDRTLSWKDVKWLQSITSLPILVK 231

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G++TAEDA++ V  GA+ I+VSNHG RQLDYVPA+I AL E+  A   ++ VYLDGGVR 
Sbjct: 232 GVITAEDARLAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRR 291

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTDVFKALALGA  VF+GRP ++ LA  G++GVR VL ++  EF+  +ALSGCTS+ +I 
Sbjct: 292 GTDVFKALALGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADIT 351

Query: 191 R 191
           R
Sbjct: 352 R 352

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 134/181 (74%), Gaps = 3/181 (1%)

Query: 13  LVLSQYL-LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
            VL  YL L NF G  L+++  ++DS  L +Y+  Q+D T++W DV WL++IT LPI++K
Sbjct: 173 FVLPPYLTLKNFEGLDLAEMDKSNDSG-LASYVAGQIDRTLSWKDVKWLQSITSLPILVK 231

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G++TAEDA++ V  GA+ I+VSNHG RQLDYVPA+I AL E+  A   ++ VYLDGGVR 
Sbjct: 232 GVITAEDARLAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRR 291

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTDVFKALALGA  VF+GRP ++ LA  G++GVR VL ++  EF+  +ALSGCTS+ +I 
Sbjct: 292 GTDVFKALALGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADIT 351

Query: 191 R 191
           R
Sbjct: 352 R 352

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 135/181 (74%), Gaps = 2/181 (1%)

Query: 19  LLANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAED 77
           +L NF    L ++  T+DS  L +Y+ SQ+D +++W+DV WL+TIT LPI++KG++TAED
Sbjct: 180 VLKNFEALDLGKMDKTNDSG-LASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAED 238

Query: 78  AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA 137
            ++ VE GA+ I+VSNHG RQLDYVPA+I  L E+ +    ++ V+LDGGVR GTDVFKA
Sbjct: 239 TRLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKA 298

Query: 138 LALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LALGA  VF+GRP L+ LA  G++GVRKVL +L +E +  +ALSGCTS+ EI R  V+ +
Sbjct: 299 LALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITD 358

Query: 198 T 198
           +
Sbjct: 359 S 359

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 135/181 (74%), Gaps = 2/181 (1%)

Query: 19  LLANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAED 77
           +L NF    L ++  T+DS  L +Y+ SQ+D +++W+DV WL+TIT LPI++KG++TAED
Sbjct: 180 VLKNFEALDLGKMDKTNDSG-LASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAED 238

Query: 78  AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA 137
            ++ VE GA+ I+VSNHG RQLDYVPA+I  L E+ +    ++ V+LDGGVR GTDVFKA
Sbjct: 239 TRLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKA 298

Query: 138 LALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LALGA  VF+GRP L+ LA  G++GVRKVL +L +E +  +ALSGCTS+ EI R  V+ +
Sbjct: 299 LALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITD 358

Query: 198 T 198
           +
Sbjct: 359 S 359

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/184 (53%), Positives = 136/184 (73%), Gaps = 3/184 (1%)

Query: 13  LVLSQYL-LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
            VL  +L L NF G  L ++   +DS  L +Y+  Q+D +++W DV WL+TIT LPI++K
Sbjct: 172 FVLPPFLTLKNFEGIDLGKMDKANDSG-LSSYVAGQIDRSLSWKDVAWLQTITSLPILVK 230

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR 
Sbjct: 231 GVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 290

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTDVFKALALGA  VF+GRP ++ LA  G++GV+KVL ++ +EF+  +ALSGC S+ EI 
Sbjct: 291 GTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEIS 350

Query: 191 REMV 194
           R  +
Sbjct: 351 RSHI 354

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
91083635	367	PREDICTED: similar to AGAP010885-PA [Tri	0.940	0.517	0.567	9e-60
270008313	350	hypothetical protein TcasGA2_TC030629 [T	0.940	0.542	0.567	1e-59
156544032	366	PREDICTED: hydroxyacid oxidase 1-like [N	0.940	0.519	0.593	1e-59
66508573	367	PREDICTED: hydroxyacid oxidase 1-like [A	0.900	0.495	0.568	2e-58
193693082	365	PREDICTED: hydroxyacid oxidase 1-like [A	0.920	0.509	0.556	3e-58
118779913	368	AGAP010885-PA [Anopheles gambiae str. PE	0.900	0.494	0.590	1e-57
383863683	366	PREDICTED: hydroxyacid oxidase 1-like [M	0.920	0.508	0.550	4e-57
157106990	364	(s)-2-hydroxy-acid oxidase [Aedes aegypt	0.910	0.505	0.586	4e-57
332372881	367	unknown [Dendroctonus ponderosae]	0.905	0.498	0.583	5e-57
380024965	367	PREDICTED: hydroxyacid oxidase 1-like [A	0.900	0.495	0.557	1e-56

>gi|91083635|ref|XP_970519.1| PREDICTED: similar to AGAP010885-PA [Tribolium castaneum]

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 144/192 (75%), Gaps = 2/192 (1%)

Query: 13  LVLSQYL-LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
            VL  +L  ANF+G K + ++ T   S L  Y+    D+++ W D+ WL++ TKLPIV+K
Sbjct: 175 FVLPPHLKFANFAGDKATGINQTESGSGLNNYVNRLFDQSLEWKDIKWLQSFTKLPIVVK 234

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G+LTAEDA I  ++G   I+VSNHG RQ+D  PASIEALPEI +AVG +V+VY+DGG+  
Sbjct: 235 GVLTAEDALIAADLGVQGILVSNHGARQVDGTPASIEALPEIVRAVGDRVEVYMDGGITD 294

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTD+FKALALGA+MVF GRPALWGLAHSG+ GV+K+L+IL  E D  +A++GC +V +I 
Sbjct: 295 GTDIFKALALGARMVFFGRPALWGLAHSGEEGVKKILNILKTELDYTMAITGCATVRDID 354

Query: 191 REMVVHETYYSK 202
             MVVHE+YYSK
Sbjct: 355 HRMVVHESYYSK 366

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008313|gb|EFA04761.1| hypothetical protein TcasGA2_TC030629 [Tribolium castaneum]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 144/192 (75%), Gaps = 2/192 (1%)

Query: 13  LVLSQYL-LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
            VL  +L  ANF+G K + ++ T   S L  Y+    D+++ W D+ WL++ TKLPIV+K
Sbjct: 158 FVLPPHLKFANFAGDKATGINQTESGSGLNNYVNRLFDQSLEWKDIKWLQSFTKLPIVVK 217

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G+LTAEDA I  ++G   I+VSNHG RQ+D  PASIEALPEI +AVG +V+VY+DGG+  
Sbjct: 218 GVLTAEDALIAADLGVQGILVSNHGARQVDGTPASIEALPEIVRAVGDRVEVYMDGGITD 277

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTD+FKALALGA+MVF GRPALWGLAHSG+ GV+K+L+IL  E D  +A++GC +V +I 
Sbjct: 278 GTDIFKALALGARMVFFGRPALWGLAHSGEEGVKKILNILKTELDYTMAITGCATVRDID 337

Query: 191 REMVVHETYYSK 202
             MVVHE+YYSK
Sbjct: 338 HRMVVHESYYSK 349

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544032|ref|XP_001604479.1| PREDICTED: hydroxyacid oxidase 1-like [Nasonia vitripennis]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 153/192 (79%), Gaps = 2/192 (1%)

Query: 13  LVLSQYL-LANFSGKLSQ-LSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
             L ++L  ANF G L++ ++++S+ S L  Y+T+  D+++ W+ VTWLK++TKLPIVLK
Sbjct: 174 FALPKHLRFANFDGYLARKINSSSEGSGLSEYVTNLFDDSLTWNVVTWLKSVTKLPIVLK 233

Query: 71  GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130
           G+LTAEDA++GV+ GASAIMVSNHG RQ+D  PASIEALPEI +AVG+KV+V++DGG+  
Sbjct: 234 GVLTAEDAELGVKYGASAIMVSNHGARQIDGTPASIEALPEIVRAVGNKVEVFMDGGITQ 293

Query: 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
           GTDVFKALALGAKMVF GRP LWGL   G+ G R VL+++  E DQA AL+GC SV ++ 
Sbjct: 294 GTDVFKALALGAKMVFFGRPLLWGLTCGGEQGARSVLEMMRREIDQAFALAGCKSVEQVT 353

Query: 191 REMVVHETYYSK 202
           ++MVVHE+ YS+
Sbjct: 354 KDMVVHESVYSR 365

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66508573|ref|XP_625149.1| PREDICTED: hydroxyacid oxidase 1-like [Apis mellifera]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/183 (56%), Positives = 138/183 (75%), Gaps = 1/183 (0%)

Query: 20  LANFSGKLS-QLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           L NF GKLS +++N    S L  Y+ +  D ++ W D+ WLK+ITKLPI+LKGILT EDA
Sbjct: 183 LGNFQGKLSTKINNAESGSGLSEYVMNLFDASLTWDDIKWLKSITKLPIILKGILTPEDA 242

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
           K+ +E G SAI+VSNHG RQ+D +PA+IEALPEI KAV  K+++Y+DGG+R G DVFKAL
Sbjct: 243 KLAIENGISAIIVSNHGARQVDSIPATIEALPEIVKAVNGKLEIYMDGGIRQGIDVFKAL 302

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET 198
           ALGAKMVF  RP LWGL++ G+ G R VL++   E D A AL+GC +V ++ ++M+ HE+
Sbjct: 303 ALGAKMVFTARPLLWGLSYGGERGARAVLEVFRKEIDVAFALTGCATVNDVTKDMIQHES 362

Query: 199 YYS 201
           YYS
Sbjct: 363 YYS 365

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193693082|ref|XP_001948314.1| PREDICTED: hydroxyacid oxidase 1-like [Acyrthosiphon pisum]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 140/187 (74%), Gaps = 1/187 (0%)

Query: 16  SQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTA 75
           S+  L NFS +LS + N ++ S L  Y+ S  D+ + W D+ WLK+IT LPI++KGIL+A
Sbjct: 179 SRLRLGNFSEELSVM-NQTNGSGLTKYVMSLFDDRLVWDDIKWLKSITDLPIIVKGILSA 237

Query: 76  EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF 135
            DAKI  ++G   + VSNHGGRQLD  PA+IE LP IA+ VGH+VD+YLD G+R+GTDVF
Sbjct: 238 ADAKIAADLGCDGVFVSNHGGRQLDTAPATIEVLPSIAREVGHRVDIYLDCGIRHGTDVF 297

Query: 136 KALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
           KALALGAKMVF+ +P LWGL + G+ G   V  I++NEFD  +AL+GC S+ +I++EMVV
Sbjct: 298 KALALGAKMVFLAQPILWGLTYDGQKGAEDVFGIVVNEFDNTMALAGCASLDQIKKEMVV 357

Query: 196 HETYYSK 202
           H++ YSK
Sbjct: 358 HKSVYSK 364

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118779913|ref|XP_309809.3| AGAP010885-PA [Anopheles gambiae str. PEST] gi|116131396|gb|EAA05477.3| AGAP010885-PA [Anopheles gambiae str. PEST]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/183 (59%), Positives = 136/183 (74%), Gaps = 1/183 (0%)

Query: 20  LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           +ANF GK + +  +   S +  YI  QLD T++W DV WL   TKLP+++KGILT EDA 
Sbjct: 186 MANFVGKAASI-RSQGGSGINEYIAEQLDPTLSWDDVKWLLGFTKLPVIVKGILTREDAI 244

Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
           I  ++G   I VSNHG RQLD VPASIEALPEI  AVG +V+++LDGG+  GTDVFKALA
Sbjct: 245 IAADLGVQGIFVSNHGARQLDSVPASIEALPEIVAAVGRRVEIFLDGGITQGTDVFKALA 304

Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199
           LGA+MVF GRPALWGLA +G++GV  VLDIL NE D  +AL+GC ++ +I +E VVHE +
Sbjct: 305 LGARMVFFGRPALWGLAVNGQAGVEHVLDILRNELDLTMALAGCKTLADITKEYVVHENH 364

Query: 200 YSK 202
           YSK
Sbjct: 365 YSK 367

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863683|ref|XP_003707309.1| PREDICTED: hydroxyacid oxidase 1-like [Megachile rotundata]

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 139/187 (74%), Gaps = 1/187 (0%)

Query: 16  SQYLLANFSGKLS-QLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILT 74
           S   L NF G++S ++ N  D S L  Y+ +  D ++ W D+ WLK+ITKLP+VLKG+L+
Sbjct: 178 SHLKLGNFQGEMSNKIKNAKDGSGLSEYVMNLFDASLKWEDIAWLKSITKLPLVLKGVLS 237

Query: 75  AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV 134
           AEDA++ ++ GA+AI+VSNHG RQ+D +PA+IEALPEI  AV  +++VY+DGGVR G DV
Sbjct: 238 AEDAELAIQHGAAAIIVSNHGARQVDTLPATIEALPEIVDAVRGRIEVYMDGGVRQGIDV 297

Query: 135 FKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           FKALA+GAKMVF  RP LWGL+  G+ G + VL+I   E D A AL+GC +V +I R+MV
Sbjct: 298 FKALAMGAKMVFAARPLLWGLSQGGEEGAKHVLEIFRKEIDLAFALTGCRAVDQITRDMV 357

Query: 195 VHETYYS 201
            HE+YYS
Sbjct: 358 KHESYYS 364

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106990|ref|XP_001649576.1| (s)-2-hydroxy-acid oxidase [Aedes aegypti] gi|108879712|gb|EAT43937.1| AAEL004676-PA [Aedes aegypti]

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/184 (58%), Positives = 134/184 (72%)

Query: 19  LLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           +LANF G+L+    +   S +  YIT QLD T++W DV WL   T+LP+++KGILT EDA
Sbjct: 180 VLANFEGRLATGVQSQGGSGINEYITEQLDPTLSWDDVKWLVNFTRLPVIVKGILTQEDA 239

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
            I  +MG   I VSNHG RQLD VPASIEALPEI KAVG +  + +DGGV  GTDVFKA+
Sbjct: 240 VIAADMGVQGIWVSNHGARQLDSVPASIEALPEIVKAVGDRTTIVMDGGVTEGTDVFKAI 299

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET 198
           ALGAKMVF GRPALWGLA +G+ GV  VLD+L  E D A+AL+GC ++G+I    VVHE+
Sbjct: 300 ALGAKMVFFGRPALWGLAVNGQQGVEHVLDLLRKELDVAMALAGCQTIGDITPNHVVHES 359

Query: 199 YYSK 202
            Y+K
Sbjct: 360 LYAK 363

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372881|gb|AEE61582.1| unknown [Dendroctonus ponderosae]

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/185 (58%), Positives = 141/185 (76%), Gaps = 2/185 (1%)

Query: 20  LANFSGKLSQLSNTS--DSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAED 77
           LANF G+ S   +     + S L  +    D ++ W D+ WLKTIT LPIVLKGILT+ED
Sbjct: 182 LANFEGENSAAVSLRGRKTGSALNNLGELFDASLQWKDIEWLKTITHLPIVLKGILTSED 241

Query: 78  AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA 137
           A +  + G + ++VSNHG RQ+D  PASIEALPEIAKAVGH+++VY+DGG+  GTDVFKA
Sbjct: 242 AVLAADHGVAGVLVSNHGARQVDGWPASIEALPEIAKAVGHRLEVYMDGGISDGTDVFKA 301

Query: 138 LALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LALGA+MVF+GRPALWGLA  G+ G RK+L+IL  EF+ ALA+SGC S+ ++++ MVVHE
Sbjct: 302 LALGARMVFIGRPALWGLACGGEEGTRKILNILKTEFEYALAISGCASLEDVRQCMVVHE 361

Query: 198 TYYSK 202
           +YY+K
Sbjct: 362 SYYAK 366

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024965|ref|XP_003696255.1| PREDICTED: hydroxyacid oxidase 1-like [Apis florea]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/183 (55%), Positives = 138/183 (75%), Gaps = 1/183 (0%)

Query: 20  LANFSGKLS-QLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           L NF G+LS +++N    S L  Y+ +  D ++ W D+ WLK+ITKLPIVLKGILT +DA
Sbjct: 183 LGNFQGELSTKINNAESGSGLSEYVMNLFDASLTWDDIKWLKSITKLPIVLKGILTPQDA 242

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
           ++ ++ G SAI+VSNHG RQ+D +PA+IEALPEI KAV  K+++Y+DGG+R G DVFKAL
Sbjct: 243 ELAIKNGVSAIIVSNHGARQVDCIPATIEALPEIVKAVNGKLEIYMDGGIRQGIDVFKAL 302

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET 198
           ALGAKMVF  RP LWGL++ G+ G R VL+I   E D A AL+GC +V ++ ++MV HE+
Sbjct: 303 ALGAKMVFTARPLLWGLSYGGERGARAVLEIFRKEIDVAFALTGCATVSDVTKDMVQHES 362

Query: 199 YYS 201
           +YS
Sbjct: 363 HYS 365

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
FB|FBgn0061356	400	CG18003 [Drosophila melanogast	0.925	0.467	0.539	1.1e-50
TAIR|locus:2091642	367	GOX1 "glycolate oxidase 1" [Ar	0.881	0.485	0.533	3.7e-48
UNIPROTKB|B8B7C5	369	GLO5 "Peroxisomal (S)-2-hydrox	0.910	0.498	0.529	4.7e-48
UNIPROTKB|Q6YT73	369	GLO5 "Peroxisomal (S)-2-hydrox	0.910	0.498	0.529	4.7e-48
TAIR|locus:2124499	368	GOX3 "glycolate oxidase 3" [Ar	0.851	0.467	0.552	1.6e-47
UNIPROTKB|B8AKX6	369	GLO1 "Peroxisomal (S)-2-hydrox	0.881	0.482	0.530	5.4e-47
UNIPROTKB|Q10CE4	369	GLO1 "Peroxisomal (S)-2-hydrox	0.881	0.482	0.530	5.4e-47
ZFIN|ZDB-GENE-060519-2	372	hao1 "hydroxyacid oxidase (gly	0.757	0.411	0.588	2.3e-46
UNIPROTKB|B8AUI3	367	GLO3 "Peroxisomal (S)-2-hydrox	0.891	0.490	0.511	3e-46
UNIPROTKB|Q7FAS1	367	GLO3 "Peroxisomal (S)-2-hydrox	0.891	0.490	0.511	3e-46

FB|FBgn0061356 CG18003 [Drosophila melanogaster (taxid:7227)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 102/189 (53%), Positives = 130/189 (68%)

Query:    16 SQYLLANFSGKXXXXXXXXXXXXXXA--YITSQLDETINWSDVTWLKTITKLPIVLKGIL 73
             S   LANF G                  Y++SQ D TI W D+ WLK IT LPIV+KG+L
Sbjct:   211 SHLSLANFQGVKATGVGNAAMGASGINEYVSSQFDPTITWKDIAWLKGITHLPIVVKGVL 270

Query:    74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133
             TAEDA +  E G + ++VSNHG RQ+D VPASIEALPEI KAVG  + V LDGG+  G D
Sbjct:   271 TAEDAVLAQEFGCAGLIVSNHGARQIDTVPASIEALPEIVKAVGDNLVVMLDGGIMQGND 330

Query:   134 VFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM 193
             +FKALALGAK VFVGRPA+WGLA++G+ GV ++L +L  +F+  +AL GC ++G+I   M
Sbjct:   331 IFKALALGAKTVFVGRPAVWGLAYNGQKGVEEMLSVLRKDFETTMALIGCQNLGDITSAM 390

Query:   194 VVHETYYSK 202
             VVHE+ Y+K
Sbjct:   391 VVHESQYAK 399

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0010181 "FMN binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 95/178 (53%), Positives = 126/178 (70%)

Query:    20 LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
             L NF G               +Y+  Q+D T++W DV WL+TITKLPI++KG+LT EDA+
Sbjct:   180 LKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDAR 239

Query:    80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
             I ++ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GTDVFKALA
Sbjct:   240 IAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 299

Query:   140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
             LGA  +F+GRP ++ LA  G++GVRKVL +L +EF+  +ALSGC S+ EI R  +  E
Sbjct:   300 LGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357

GO:0003824 "catalytic activity" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=ISS;IMP

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=IMP

UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 98/185 (52%), Positives = 131/185 (70%)

Query:    14 VLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGI 72
             VL  +L L NF G               +Y+  Q+D T++W DV WL+TIT LPI++KG+
Sbjct:   174 VLPPFLTLKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGV 233

Query:    73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132
             +TAED ++ VE GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GT
Sbjct:   234 ITAEDTRLAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGT 293

Query:   133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192
             DVFKALALGA  VF+GRP ++ LA +G++GVR VL +L +EF+  +ALSGCTS+ +I R 
Sbjct:   294 DVFKALALGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRN 353

Query:   193 MVVHE 197
              V+ E
Sbjct:   354 HVITE 358

GO:0005777 "peroxisome" evidence=ISS

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=ISS

GO:0010109 "regulation of photosynthesis" evidence=ISS

GO:0019048 "virus-host interaction" evidence=ISS

UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 98/185 (52%), Positives = 131/185 (70%)

Query:    14 VLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGI 72
             VL  +L L NF G               +Y+  Q+D T++W DV WL+TIT LPI++KG+
Sbjct:   174 VLPPFLTLKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGV 233

Query:    73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132
             +TAED ++ VE GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GT
Sbjct:   234 ITAEDTRLAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGT 293

Query:   133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192
             DVFKALALGA  VF+GRP ++ LA +G++GVR VL +L +EF+  +ALSGCTS+ +I R 
Sbjct:   294 DVFKALALGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRN 353

Query:   193 MVVHE 197
              V+ E
Sbjct:   354 HVITE 358

GO:0005777 "peroxisome" evidence=ISS

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=ISS

GO:0010109 "regulation of photosynthesis" evidence=ISS

GO:0019048 "virus-host interaction" evidence=ISS

TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 95/172 (55%), Positives = 127/172 (73%)

Query:    20 LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
             L NF G               +Y+  Q+D++++W D+ WL++IT LPI++KG++TAEDA+
Sbjct:   180 LKNFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDAR 239

Query:    80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
             I VE GA+ I+VSNHG RQLDYVPA+I AL E+ KAV  ++ V+LDGGVR GTDVFKALA
Sbjct:   240 IAVEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALA 299

Query:   140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
             LGA  VFVGRP+L+ LA  G++GVRK+L +L +EF+  +ALSGC S+ EI R
Sbjct:   300 LGASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISR 351

GO:0003824 "catalytic activity" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 95/179 (53%), Positives = 125/179 (69%)

Query:    14 VLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGI 72
             VL  YL L NF G               +Y+  Q+D T++W DV WL++IT LPI++KG+
Sbjct:   174 VLPPYLTLKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGV 233

Query:    73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132
             +TAEDA++ V  GA+ I+VSNHG RQLDYVPA+I AL E+  A   ++ VYLDGGVR GT
Sbjct:   234 ITAEDARLAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGT 293

Query:   133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
             DVFKALALGA  VF+GRP ++ LA  G++GVR VL ++  EF+  +ALSGCTS+ +I R
Sbjct:   294 DVFKALALGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITR 352

GO:0005777 "peroxisome" evidence=ISS

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=ISS

GO:0010109 "regulation of photosynthesis" evidence=ISS

GO:0019048 "virus-host interaction" evidence=ISS

UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 95/179 (53%), Positives = 125/179 (69%)

Query:    14 VLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGI 72
             VL  YL L NF G               +Y+  Q+D T++W DV WL++IT LPI++KG+
Sbjct:   174 VLPPYLTLKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGV 233

Query:    73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132
             +TAEDA++ V  GA+ I+VSNHG RQLDYVPA+I AL E+  A   ++ VYLDGGVR GT
Sbjct:   234 ITAEDARLAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGT 293

Query:   133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
             DVFKALALGA  VF+GRP ++ LA  G++GVR VL ++  EF+  +ALSGCTS+ +I R
Sbjct:   294 DVFKALALGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITR 352

GO:0005777 "peroxisome" evidence=IDA

GO:0008891 "glycolate oxidase activity" evidence=IDA

GO:0009853 "photorespiration" evidence=IMP

GO:0010109 "regulation of photosynthesis" evidence=IMP

GO:0019048 "virus-host interaction" evidence=IPI

ZFIN|ZDB-GENE-060519-2 hao1 "hydroxyacid oxidase (glycolate oxidase) 1" [Danio rerio (taxid:7955)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 90/153 (58%), Positives = 116/153 (75%)

Query:    42 YITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY 101
             Y+T  +D T+ W D+ WLKT+TKLP+V+KG+LTAEDAK  +E G   I+VSNHG RQLD 
Sbjct:   211 YVTQAIDATVRWQDIGWLKTLTKLPVVVKGVLTAEDAKEALEYGVDGILVSNHGARQLDG 270

Query:   102 VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
             VPA+I+ALPE+  AV  +V+V++DGGVR G+DV KALALGAK VF+GRP LW LA  G+ 
Sbjct:   271 VPATIDALPEVVAAVAGQVEVFMDGGVRMGSDVLKALALGAKAVFIGRPVLWALACQGEK 330

Query:   162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
             GV  VL+IL  E   ALAL+GC S+ E+ R ++
Sbjct:   331 GVSDVLEILREELHLALALAGCRSLKEVNRSLL 363

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 92/180 (51%), Positives = 127/180 (70%)

Query:    19 LLANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
             +L NF                 +Y+ SQ+D +++W+DV WL+TIT LPI++KG++TAED 
Sbjct:   180 VLKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDT 239

Query:    79 KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
             ++ VE GA+ I+VSNHG RQLDYVPA+I  L E+ +    ++ V+LDGGVR GTDVFKAL
Sbjct:   240 RLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKAL 299

Query:   139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET 198
             ALGA  VF+GRP L+ LA  G++GVRKVL +L +E +  +ALSGCTS+ EI R  V+ ++
Sbjct:   300 ALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDS 359

GO:0005777 "peroxisome" evidence=ISS

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=ISS

GO:0010109 "regulation of photosynthesis" evidence=ISS

GO:0019048 "virus-host interaction" evidence=ISS

UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 92/180 (51%), Positives = 127/180 (70%)

Query:    19 LLANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
             +L NF                 +Y+ SQ+D +++W+DV WL+TIT LPI++KG++TAED 
Sbjct:   180 VLKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDT 239

Query:    79 KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
             ++ VE GA+ I+VSNHG RQLDYVPA+I  L E+ +    ++ V+LDGGVR GTDVFKAL
Sbjct:   240 RLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKAL 299

Query:   139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET 198
             ALGA  VF+GRP L+ LA  G++GVRKVL +L +E +  +ALSGCTS+ EI R  V+ ++
Sbjct:   300 ALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDS 359

GO:0005777 "peroxisome" evidence=ISS

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=ISS

GO:0010109 "regulation of photosynthesis" evidence=ISS

GO:0019048 "virus-host interaction" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6YT73	GLO5_ORYSJ	1, ., 1, ., 3, ., 1, 5	0.5508	0.9108	0.4986	yes	N/A
Q9UJM8	HAOX1_HUMAN	1, ., 1, ., 3, ., 1, 5	0.5414	0.8811	0.4810	yes	N/A
Q3ZBW2	HAOX2_BOVIN	1, ., 1, ., 3, ., 1, 5	0.5882	0.7574	0.4334	yes	N/A
Q9WU19	HAOX1_MOUSE	1, ., 1, ., 3, ., 1, 5	0.5414	0.8811	0.4810	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.2	LOW CONFIDENCE prediction!
3rd Layer	5.3.3	LOW CONFIDENCE prediction!
3rd Layer	1.1.3.15	LOW CONFIDENCE prediction!
3rd Layer	1.1.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
pfam01070	302	pfam01070, FMN_dh, FMN-dependent dehydrogenase	7e-82
cd02809	299	cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom	2e-81
PLN02535	364	PLN02535, PLN02535, glycolate oxidase	1e-69
PLN02979	366	PLN02979, PLN02979, glycolate oxidase	4e-67
PLN02493	367	PLN02493, PLN02493, probable peroxisomal (S)-2-hyd	8e-65
cd02922	344	cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b	4e-63
cd03332	383	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO)	3e-62
COG1304	360	COG1304, idi, Isopentenyl diphosphate isomerase (B	9e-60
cd04737	351	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN	1e-53
TIGR03966	385	TIGR03966, actino_HemFlav, heme/flavin dehydrogena	7e-52
PRK11197	381	PRK11197, lldD, L-lactate dehydrogenase; Provision	4e-49
cd04736	361	cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li	2e-48
TIGR02708	367	TIGR02708, L_lactate_ox, L-lactate oxidase	1e-37
PRK05437	352	PRK05437, PRK05437, isopentenyl pyrophosphate isom	2e-16
cd02811	326	cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth	6e-14
TIGR02151	333	TIGR02151, IPP_isom_2, isopentenyl-diphosphate del	1e-12
cd04722	200	cd04722, TIM_phosphate_binding, TIM barrel protein	2e-08
pfam01645	367	pfam01645, Glu_synthase, Conserved region in gluta	1e-07
COG0069	485	COG0069, GltB, Glutamate synthase domain 2 [Amino	1e-07
cd02808	392	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b	2e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-04
COG0167	310	COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle	3e-04
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-04
cd00381	325	cd00381, IMPDH, IMPDH: The catalytic domain of the	3e-04
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	5e-04
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	0.001
cd04730	236	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD	0.001

>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase

 Score =  245 bits (627), Expect = 7e-82
 Identities = 77/145 (53%), Positives = 103/145 (71%)

Query: 52  NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE 111
            W D+ WL+   K P+V+KGIL+ EDAK  VE G   I+VSNHGGRQLD  PA+I+ALPE
Sbjct: 158 TWDDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGGRQLDGAPATIDALPE 217

Query: 112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI 171
           I  AVG ++ V +DGG+R GTDV KALALGA  V +GRP L+GLA  G++GV   L+IL 
Sbjct: 218 IVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEILR 277

Query: 172 NEFDQALALSGCTSVGEIQREMVVH 196
           +E ++ +AL GCTS+ ++   ++  
Sbjct: 278 DELERTMALLGCTSIADLTPSLLRR 302

Length = 302

>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

 Score =  243 bits (623), Expect = 2e-81
 Identities = 79/141 (56%), Positives = 105/141 (74%)

Query: 51  INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALP 110
           + W D+ WL++  K P++LKGILT EDA   V+ GA  I+VSNHGGRQLD  PA+I+ALP
Sbjct: 159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALP 218

Query: 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDIL 170
           EI  AVG +++V LDGG+R GTDV KALALGA  V +GRP L+GLA  G++GV  VL+IL
Sbjct: 219 EIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEIL 278

Query: 171 INEFDQALALSGCTSVGEIQR 191
            +E ++A+AL GC S+ ++  
Sbjct: 279 RDELERAMALLGCASLADLDP 299

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299

>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase

 Score =  215 bits (550), Expect = 1e-69
 Identities = 95/178 (53%), Positives = 125/178 (70%)

Query: 20  LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           L NF G LS    +   S L A+ +   D +++W D+ WL++IT LPI++KG+LT EDA 
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238

Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
             VE+G + I+VSNHG RQLDY PA+I  L E+ +AVG +V V LDGGVR GTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298

Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LGA+ V VGRP ++GLA  G+ GVRKV+++L +E +  +ALSGC SV +I R  V  E
Sbjct: 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTE 356

Length = 364

>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase

 Score =  209 bits (533), Expect = 4e-67
 Identities = 99/179 (55%), Positives = 133/179 (74%), Gaps = 2/179 (1%)

Query: 20  LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           L NF G  L ++   +DS  L +Y+  Q+D T++W DV WL+TITKLPI++KG+LT EDA
Sbjct: 179 LKNFEGLDLGKMDEANDSG-LASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDA 237

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
           +I ++ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GTDVFKAL
Sbjct: 238 RIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 297

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           ALGA  +F+GRP ++ LA  G++GVRKVL +L +EF+  +ALSGC S+ EI R  +  E
Sbjct: 298 ALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 356

Length = 366

>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase

 Score =  203 bits (518), Expect = 8e-65
 Identities = 99/179 (55%), Positives = 133/179 (74%), Gaps = 2/179 (1%)

Query: 20  LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
           L NF G  L ++   +DS  L +Y+  Q+D T++W DV WL+TITKLPI++KG+LT EDA
Sbjct: 180 LKNFEGLDLGKMDEANDSG-LASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDA 238

Query: 79  KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
           +I ++ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GTDVFKAL
Sbjct: 239 RIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 298

Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           ALGA  +F+GRP ++ LA  G++GVRKVL +L +EF+  +ALSGC S+ EI R  +  E
Sbjct: 299 ALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357

Length = 367

>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain

 Score =  198 bits (506), Expect = 4e-63
 Identities = 75/150 (50%), Positives = 99/150 (66%), Gaps = 3/150 (2%)

Query: 43  ITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYV 102
           ++  +D T+ W D+ WL+  TKLPIVLKG+ T EDA +  E G   I++SNHGGRQLD  
Sbjct: 192 MSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTA 251

Query: 103 PASIEALPEI---AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG 159
           PA IE L EI      V  K++VY+DGGVR GTDV KAL LGAK V +GRP L+ L+  G
Sbjct: 252 PAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYG 311

Query: 160 KSGVRKVLDILINEFDQALALSGCTSVGEI 189
           + GV K + IL +E +  + L G TS+ ++
Sbjct: 312 EEGVEKAIQILKDEIETTMRLLGVTSLDQL 341

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344

>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain

 Score =  197 bits (503), Expect = 3e-62
 Identities = 71/140 (50%), Positives = 95/140 (67%)

Query: 53  WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
           W D+ +L+  T LPIVLKGIL  +DA+  VE G   ++VSNHGGRQ+D   A+++ALPEI
Sbjct: 242 WEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEI 301

Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
            +AVG ++ V  D GVR G D+ KALALGAK V +GRP  +GLA  G+ GV  VL  L+ 
Sbjct: 302 VEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLA 361

Query: 173 EFDQALALSGCTSVGEIQRE 192
           E D  + L+G  S+ E+ R+
Sbjct: 362 ELDLTMGLAGIRSIAELTRD 381

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383

>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

 Score =  190 bits (485), Expect = 9e-60
 Identities = 71/162 (43%), Positives = 102/162 (62%)

Query: 38  SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR 97
           S+  Y+++     I+  D   +      P+VLKGIL  EDA      GA  I VSNHGGR
Sbjct: 192 SIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGR 251

Query: 98  QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH 157
           QLD+  ++ ++LPEI +AVG +++V  DGG+R G DV KALALGA  V +GRP L+GLA 
Sbjct: 252 QLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAA 311

Query: 158 SGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199
            G++GV +VL+I+  E   A+AL+G  ++ E++R  +V    
Sbjct: 312 GGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353

Length = 360

>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain

 Score =  174 bits (442), Expect = 1e-53
 Identities = 68/152 (44%), Positives = 99/152 (65%)

Query: 40  LAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL 99
           ++ I +   + ++ +D+ ++  I+ LP+++KGI + EDA + +  GA  I VSNHGGRQL
Sbjct: 197 ISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQL 256

Query: 100 DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG 159
           D  PAS ++LPEIA+AV H+V +  D GVR G  VFKALA GA  V VGRP L+GLA  G
Sbjct: 257 DGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGG 316

Query: 160 KSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
             GV  VL+ L  E    + L+G  ++ +++R
Sbjct: 317 AQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351

>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system

 Score =  170 bits (433), Expect = 7e-52
 Identities = 79/143 (55%), Positives = 98/143 (68%)

Query: 53  WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
           W DV WL+     P +LKGI   +DA+  V+ GA+AI VSNHGG  LD  PA+I ALP I
Sbjct: 236 WEDVAWLREQWGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAI 295

Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
           A+AVG +V+V LDGG+R G+DV KALALGA+ V +GR  LWGLA +G++GV  VLDIL  
Sbjct: 296 AEAVGDQVEVLLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDILRQ 355

Query: 173 EFDQALALSGCTSVGEIQREMVV 195
             D AL   G  SV E+ RE +V
Sbjct: 356 GIDSALLGLGKASVHELSREDLV 378

Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385

>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional

 Score =  163 bits (415), Expect = 4e-49
 Identities = 71/176 (40%), Positives = 106/176 (60%), Gaps = 3/176 (1%)

Query: 20  LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           L N S  L + +   D    + ++ +  D +I+W D+ W++     P+V+KGIL  EDA+
Sbjct: 204 LGNISAYLGKPTGLED---YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAR 260

Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
             V  GA  I+VSNHGGRQLD V +S  ALP IA AV   + +  D G+R G DV + +A
Sbjct: 261 DAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320

Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
           LGA  V +GR  ++ LA +G++GV  +LD++  E   A+ L+G  S+ EI R+ +V
Sbjct: 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLV 376

Length = 381

>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain

 Score =  161 bits (408), Expect = 2e-48
 Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 7/179 (3%)

Query: 18  YLLANFSGKLSQLSN-----TSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGI 72
           +LL      + QL+N       D     A ++ Q+D + NW D+ WL+ +    +++KGI
Sbjct: 185 WLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI 244

Query: 73  LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132
           +TAEDAK  +E+GA  +++SNHGGRQLD   A IEAL EI  A      V +D G+R G+
Sbjct: 245 VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYK--PVLIDSGIRRGS 302

Query: 133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           D+ KALALGA  V +GR  L+GLA  G++GV +VL +L  E D+ LAL GC  +  +  
Sbjct: 303 DIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361

>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase

 Score =  133 bits (335), Expect = 1e-37
 Identities = 59/160 (36%), Positives = 94/160 (58%)

Query: 40  LAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL 99
           +  +     + ++  D+  +   + LP+ +KG    EDA   ++ GAS I V+NHGGRQL
Sbjct: 204 MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQL 263

Query: 100 DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG 159
           D  PA+ ++L E+A+AV  +V +  D GVR G  VFKALA GA +V +GRP ++GLA  G
Sbjct: 264 DGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323

Query: 160 KSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199
             G R+V + L  E  + + L+G  ++ +++   + H  Y
Sbjct: 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPY 363

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367

>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 30/162 (18%)

Query: 58  WLKTITKL------PIVLK----GILTAEDAKIGVEMGASAIMVSNHGG---------RQ 98
           WL  I ++      P+++K    GI + E AK   + G  AI V+  GG         R 
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGI-SKETAKRLADAGVKAIDVAGAGGTSWAAIENYRA 232

Query: 99  LDYVPAS---------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
            D   AS          ++L E A+++   + +   GG+R G D+ KALALGA  V +  
Sbjct: 233 RDDRLASYFADWGIPTAQSLLE-ARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAG 291

Query: 150 PALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           P L      G+  V ++++  I E   A+ L+G  ++ E+++
Sbjct: 292 PFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK 333

Length = 352

>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

 Score = 68.7 bits (169), Expect = 6e-14
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 35/170 (20%)

Query: 52  NWSDVTWLKTITKL------PIVLK----GILTAEDAKIGVEMGASAIMVSNHGG----- 96
           ++    WL+ I +L      P+++K    GI + E AK   + G  AI V+  GG     
Sbjct: 162 DFRG--WLERIEELVKALSVPVIVKEVGFGI-SRETAKRLADAGVKAIDVAGAGGTSWAR 218

Query: 97  ------RQLDYVPASI---------EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG 141
                 +  D   A            +L E+  A+   + +   GG+R G D+ KALALG
Sbjct: 219 VENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALG 277

Query: 142 AKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           A +V +  P L   A  G+  V + ++ +I E   A+ L+G  ++ E+++
Sbjct: 278 ADLVGMAGPFL-KAALEGEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326

>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 32/168 (19%)

Query: 52  NWSDVTWLKTITKL------PIVLK----GILTAEDAKIGVEMGASAIMVSNHGG----- 96
           N+    WL+ I ++      P+++K    GI + E AK+  + G SAI V+  GG     
Sbjct: 163 NFKG--WLEKIAEICSQLSVPVIVKEVGFGI-SKEVAKLLADAGVSAIDVAGAGGTSWAQ 219

Query: 97  ----RQLDYVPAS---------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143
               R      AS           +L E  ++      +   GG+R G DV KA+ALGA 
Sbjct: 220 VENYRAKGSNLASFFNDWGIPTAASLLE-VRSDAPDAPIIASGGLRTGLDVAKAIALGAD 278

Query: 144 MVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
            V + RP L      G+  V + ++++I E   A+ L+G  ++ E+++
Sbjct: 279 AVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKK 326

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333

>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 53  WSDVTWLKTIT-KLPIVLKGILTAEDAKIG-VEMGASAIMVSNHGGRQLDYVPASIEALP 110
              +  L+     + +V+K   T E A     E G   + + N GG         I  L 
Sbjct: 102 LELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLL 161

Query: 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
            I    G KV V   GG+    D  +ALALGA  V VG 
Sbjct: 162 LILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200

>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 21/113 (18%)

Query: 59  LKTIT-KLPIVLKGILTAE----DAKIGV-EMGASAIMVSNHGG-------RQLDYVPAS 105
           LK I  K PI +K  L +         GV + GA  I++  H G         + +    
Sbjct: 196 LKEINPKAPISVK--LVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLP 253

Query: 106 IE-ALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
            E AL E+ + +       +V +  DGG+R G DV KA ALGA  V++G  AL
Sbjct: 254 WELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAAL 306

This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367

>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 59  LKTITKL-PIVLKGILTA----EDAKIGV-EMGASAIMVSNHGG-------RQLDYVPAS 105
           LK       I +K  L A         GV + GA  I +    G         +D+    
Sbjct: 297 LKEANPWAKISVK--LVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIP 354

Query: 106 IE-ALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
            E  L E  + +       KV +  DGG+R G DV KA ALGA  V  G  AL
Sbjct: 355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAAL 407

Length = 485

>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 85  GASAIMVSNHGGRQLDYVPASIEALPE-----IAKAVGHKVDVYLDGGVRYGTDVFKALA 139
           GA+ +   +H G     +P +   L       +   +  +V +   GG+R G DV KALA
Sbjct: 252 GAAPLTFIDHVG-----LP-TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305

Query: 140 LGAKMVFVGRPAL 152
           LGA  V +G  AL
Sbjct: 306 LGADAVGIGTAAL 318

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 22/108 (20%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           V  +K     + I+   + TAE A+  +E GA A+             +V+  G      
Sbjct: 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVG------ 313

Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           VP  I A+ + A+A   + + V  DGG+RY  D+ KALA GA  V +G
Sbjct: 314 VP-QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360

Length = 486

>gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 37/162 (22%)

Query: 56  VTWLKTITKLPIVLKGILTAED------AKIGVEMGASAIMVSN---------------- 93
           +  +K  TK+P+ +K  L          AK   E GA  ++  N                
Sbjct: 153 LEAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPV 210

Query: 94  ----HGGRQLDYV-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
                GG     + P ++  + E+ K +G  + +   GG+  G D  + +  GA  V VG
Sbjct: 211 LANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVG 270

Query: 149 RPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
              +         G   V +I I    + L   G  S+ +I 
Sbjct: 271 TALI-------YKGPGIVKEI-IKGLARWLEEKGFESIQDII 304

Length = 310

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----RQLDYVP-ASIEA 108
           +  +K T   L I+   + TAE AK  ++ GA  + V    G     R +  V    I A
Sbjct: 256 IKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITA 315

Query: 109 LPEIAK-AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           + ++A+ A    + V  DGG+RY  D+ KALA GA  V +G
Sbjct: 316 VYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 24/111 (21%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI-------- 106
           + ++K     + ++   ++TAE A+  ++ GA  + V    G        SI        
Sbjct: 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPG--------SICTTRIVTG 177

Query: 107 ------EALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
                  A+ ++A A   + V V  DGG+R   D+ KALA GA  V +G  
Sbjct: 178 VGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 13/95 (13%)

Query: 64  KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----RQLDYV-----PASIEALPEIA 113
            +PIV   +++AE  +  +E GA+ I V    G     R +  V      A +E   E  
Sbjct: 266 GVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEAR 325

Query: 114 KAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           K  GH   V+ DGGVR+  DV  ALA GA  V VG
Sbjct: 326 KLGGH---VWADGGVRHPRDVALALAAGASNVMVG 357

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 108 ALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
           A+ E+A A     V V  DGG+RY  D+ KALA GA  V +G 
Sbjct: 314 AVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGS 356

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 74  TAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
           + E+A+     GA A++      GG +  +   +   +PE+  AV   + V   GG+  G
Sbjct: 111 SVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADG 168

Query: 132 TDVFKALALGAKMVFVG 148
             +  ALALGA  V +G
Sbjct: 169 RGIAAALALGADGVQMG 185

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG0538|consensus	363		100.0
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	100.0
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	100.0
PLN02979	366	glycolate oxidase	100.0
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	100.0
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	99.98
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	99.98
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	99.98
PLN02535	364	glycolate oxidase	99.97
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	99.97
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	99.97
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	99.97
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	99.96
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	99.96
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	99.96
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.96
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	99.91
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	99.89
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	99.86
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	99.84
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	99.81
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	99.8
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.8
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	99.79
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	99.78
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	99.78
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	99.77
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	99.77
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.77
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	99.77
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	99.77
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.76
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.76
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.76
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	99.76
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	99.76
PLN02826	409	dihydroorotate dehydrogenase	99.76
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	99.75
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.74
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	99.74
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	99.74
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	99.72
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	99.69
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	99.69
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	99.68
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.67
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	99.67
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	99.64
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	99.63
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	99.61
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	99.56
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	99.56
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	99.55
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	99.55
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	99.55
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	99.54
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	99.53
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	99.52
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	99.5
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	99.49
KOG2550|consensus	503		99.48
KOG1436|consensus	398		99.43
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	99.41
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	99.4
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	99.37
KOG2335|consensus	358		99.36
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	99.32
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	99.24
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	99.21
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	99.17
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.14
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	99.12
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.11
PRK13523	337	NADPH dehydrogenase NamA; Provisional	99.1
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	99.05
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.04
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	99.02
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	99.01
PRK14024	241	phosphoribosyl isomerase A; Provisional	99.0
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	99.0
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	98.99
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	98.98
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	98.97
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	98.97
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	98.97
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	98.94
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	98.94
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	98.94
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	98.93
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.88
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	98.88
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	98.87
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	98.86
KOG1799|consensus	471		98.85
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.84
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.83
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	98.81
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	98.81
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	98.78
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	98.78
PRK07695	201	transcriptional regulator TenI; Provisional	98.77
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	98.77
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	98.75
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	98.75
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	98.75
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	98.74
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	98.73
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	98.73
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	98.72
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	98.72
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	98.72
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.72
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	98.71
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	98.68
PRK00208	250	thiG thiazole synthase; Reviewed	98.67
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	98.65
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	98.62
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	98.62
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.61
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	98.61
PLN02591	250	tryptophan synthase	98.6
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	98.6
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.57
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	98.55
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	98.53
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	98.53
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	98.52
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	98.52
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	98.5
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	98.5
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.49
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	98.49
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	98.48
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.48
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	98.48
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	98.48
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	98.45
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	98.45
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	98.44
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	98.44
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	98.42
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.41
PRK10605	362	N-ethylmaleimide reductase; Provisional	98.4
KOG2333|consensus	614		98.39
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	98.39
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	98.35
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	98.33
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.32
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	98.31
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	98.31
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	98.3
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	98.3
PLN02617	538	imidazole glycerol phosphate synthase hisHF	98.27
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	98.26
KOG0399|consensus	2142		98.24
PLN02460	338	indole-3-glycerol-phosphate synthase	98.24
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	98.21
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.21
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	98.19
PRK14024	241	phosphoribosyl isomerase A; Provisional	98.19
KOG2334|consensus	477		98.18
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	98.17
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.15
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	98.14
PLN02411	391	12-oxophytodienoate reductase	98.14
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	98.1
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	98.1
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	98.09
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	98.08
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	98.07
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	98.07
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	98.06
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.05
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	98.04
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	98.04
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	98.04
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	98.02
PRK04302	223	triosephosphate isomerase; Provisional	98.02
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	98.02
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	98.02
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.01
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	98.0
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.0
PLN02334	229	ribulose-phosphate 3-epimerase	97.99
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.96
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	97.94
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	97.94
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	97.94
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	97.94
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	97.92
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	97.91
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.91
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	97.9
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	97.89
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.89
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.87
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	97.87
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	97.85
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	97.84
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.84
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	97.84
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.82
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	97.81
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	97.8
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.8
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	97.79
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	97.78
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	97.77
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.75
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	97.74
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.74
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	97.73
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.69
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	97.67
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.67
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	97.66
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	97.66
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	97.65
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	97.64
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	97.61
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	97.61
KOG1606|consensus	296		97.6
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	97.57
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.56
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	97.56
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	97.54
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	97.53
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	97.53
TIGR00875	213	fsa_talC_mipB fructose-6-phosphate aldolase, TalC/	97.51
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	97.5
TIGR01334	277	modD putative molybdenum utilization protein ModD.	97.49
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.46
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	97.45
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	97.45
PRK06806	281	fructose-bisphosphate aldolase; Provisional	97.44
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	97.43
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	97.43
PRK08999	312	hypothetical protein; Provisional	97.41
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	97.38
PRK12656	222	fructose-6-phosphate aldolase; Reviewed	97.38
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.38
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.38
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	97.37
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	97.35
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	97.35
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.34
PF04898	287	Glu_syn_central: Glutamate synthase central domain	97.34
PRK06096	284	molybdenum transport protein ModD; Provisional	97.34
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	97.31
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.31
PRK01362	214	putative translaldolase; Provisional	97.31
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	97.3
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	97.3
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	97.28
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	97.28
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	97.25
KOG4201|consensus	289		97.25
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	97.22
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	97.19
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	97.15
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	97.15
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	97.1
PRK12376	236	putative translaldolase; Provisional	97.07
PRK12653	220	fructose-6-phosphate aldolase; Reviewed	97.06
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.05
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.05
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	97.05
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.04
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	97.03
PRK08005	210	epimerase; Validated	97.03
PRK07315	293	fructose-bisphosphate aldolase; Provisional	97.02
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	97.02
PRK06801	286	hypothetical protein; Provisional	97.02
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	97.0
PRK12655	220	fructose-6-phosphate aldolase; Reviewed	96.99
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.95
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	96.95
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	96.94
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.92
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.92
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.91
PRK08227	264	autoinducer 2 aldolase; Validated	96.91
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	96.9
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.89
PLN02417	280	dihydrodipicolinate synthase	96.89
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	96.87
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	96.81
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.8
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	96.8
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	96.78
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	96.78
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	96.77
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	96.75
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	96.73
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	96.72
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	96.72
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	96.72
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	96.71
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	96.7
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	96.69
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	96.65
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.62
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	96.61
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.59
TIGR02134	236	transald_staph transaldolase. This small family of	96.58
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.56
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	96.53
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	96.52
PRK08185	283	hypothetical protein; Provisional	96.52
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	96.51
PRK04147	293	N-acetylneuraminate lyase; Provisional	96.48
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	96.45
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	96.44
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	96.43
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	96.4
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	96.38
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	96.34
PRK07709	285	fructose-bisphosphate aldolase; Provisional	96.32
PRK03170	292	dihydrodipicolinate synthase; Provisional	96.23
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	96.18
PRK06852	304	aldolase; Validated	96.15
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.1
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	96.04
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	96.02
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	96.0
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	95.89
PRK05835	307	fructose-bisphosphate aldolase; Provisional	95.89
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	95.89
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.87
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	95.86
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	95.8
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	95.74
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	95.7
PF09370	268	TIM-br_sig_trns: TIM-barrel signal transduction pr	95.68
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	95.6
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	95.51
PLN02535	364	glycolate oxidase	95.44
PRK14057	254	epimerase; Provisional	95.42
PLN02979	366	glycolate oxidase	95.41
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	95.38
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	95.33
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	95.3
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	95.28
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	95.27
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	95.22
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	95.01
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	94.98
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	94.97
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	94.96
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	94.9
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	94.9
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	94.74
PLN02591	250	tryptophan synthase	94.63
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	94.57
PRK09250	348	fructose-bisphosphate aldolase; Provisional	94.55
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	94.53
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	94.45
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	94.42
cd00439	252	Transaldolase Transaldolase. Enzymes found in the	94.23
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	94.2
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	94.19
COG0176	239	MipB Transaldolase [Carbohydrate transport and met	94.11
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	94.11
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	94.08
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	94.08
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	94.08
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	94.06
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	94.02
COG3684	306	LacD Tagatose-1,6-bisphosphate aldolase [Carbohydr	94.01
cd00953	279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	93.97
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	93.93
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	93.92
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	93.89
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	93.87
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	93.85
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	93.83
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	93.82
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	93.8
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	93.69
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	93.69
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	93.65
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	93.64
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	93.6
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	93.55
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	93.51
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	93.5
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	93.48
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	93.46
cd00957	313	Transaldolase_TalAB Transaldolases including both	93.41
PTZ00411	333	transaldolase-like protein; Provisional	93.4
KOG2550|consensus	503		93.32
PRK12399	324	tagatose 1,6-diphosphate aldolase; Reviewed	93.31
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	93.3
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	93.28
PRK08662	343	nicotinate phosphoribosyltransferase; Reviewed	93.2
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	93.19
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	93.19
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	93.17
PRK04161	329	tagatose 1,6-diphosphate aldolase; Reviewed	93.16
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	93.15
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.1
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	93.05
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	93.04
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	93.0
PF01680	208	SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p	92.99
PRK02227	238	hypothetical protein; Provisional	92.94
TIGR01232	325	lacD tagatose 1,6-diphosphate aldolase. This famil	92.93
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	92.93
PRK11572	248	copper homeostasis protein CutC; Provisional	92.65
PLN02460	338	indole-3-glycerol-phosphate synthase	92.62
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	92.6
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	92.45
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	92.43
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	92.34
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	92.34
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	92.32
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	92.3
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	92.29
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	92.23
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	92.19
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.18
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	92.09
PRK12309	391	transaldolase/EF-hand domain-containing protein; P	92.06
PRK07084	321	fructose-bisphosphate aldolase; Provisional	92.03
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	91.99
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	91.96
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	91.95
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	91.81
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	91.78
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	91.77
PRK00208	250	thiG thiazole synthase; Reviewed	91.65
KOG4175|consensus	268		91.64
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	91.48
PRK12346	316	transaldolase A; Provisional	91.44
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	91.38
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	91.33
TIGR00874	317	talAB transaldolase. This family includes the majo	91.26
TIGR00875	213	fsa_talC_mipB fructose-6-phosphate aldolase, TalC/	91.25
PRK05269	318	transaldolase B; Provisional	91.21
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	90.8
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	90.78
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	90.75
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	90.69
TIGR03586	327	PseI pseudaminic acid synthase.	90.64
PF03102	241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	90.56
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	90.43
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	90.33
KOG3111|consensus	224		90.27
smart00052	241	EAL Putative diguanylate phosphodiesterase. Putati	90.24
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	90.21
TIGR03586	327	PseI pseudaminic acid synthase.	90.19
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	89.94
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	89.56
PLN02334	229	ribulose-phosphate 3-epimerase	89.54
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	89.5
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	89.49
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	89.41
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	89.39
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	89.35
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	89.32
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	89.27
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	89.06
PRK09197	350	fructose-bisphosphate aldolase; Provisional	88.93
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	88.88
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	88.88
PF00563	236	EAL: EAL domain; InterPro: IPR001633 This domain i	88.75
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	88.74
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	88.66
PLN02858	1378	fructose-bisphosphate aldolase	88.65
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	88.53
COG1411	229	Uncharacterized protein related to proFAR isomeras	88.32
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	88.22
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	88.09
PRK01362	214	putative translaldolase; Provisional	88.07
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	88.03
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	87.75
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	87.73
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	87.73
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	87.7
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	87.52
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	87.39
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	87.38
PF01680	208	SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p	87.27
PRK02227	238	hypothetical protein; Provisional	87.23
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	87.05
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	86.95
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	86.88
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	86.77
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	86.71
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	86.67
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	86.58
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	86.53
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	86.46
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	86.46
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	86.16
KOG0538|consensus	363		86.14
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	85.92
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	85.92
PRK00112	366	tgt queuine tRNA-ribosyltransferase; Provisional	85.89
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	85.87

>KOG0538|consensus

Probab=100.00  E-value=7.7e-38  Score=263.68  Aligned_cols=184  Identities=58%  Similarity=0.961  Sum_probs=172.4

Q ss_pred             cccCCcceecccCCCcccccCCCCcchhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEe
Q psy16780         12 CLVLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMV   91 (202)
Q Consensus        12 ~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v   91 (202)
                      +++|+.+.++||......+-+....++++.+++.+.||.++|+.|+|+++.++.|+++|++++.|+|+.+.++|+++|+|
T Consensus       171 f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIV  250 (363)
T KOG0538|consen  171 FSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIV  250 (363)
T ss_pred             ccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEE
Confidence            57899999999987654333223568899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHH
Q psy16780         92 SNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus        92 ~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      |||||||+|..+.++++|+++.+++.+++||+.+||||+|.|++||+++||.+|.+|||++++++++|..+|+++++.++
T Consensus       251 SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~  330 (363)
T KOG0538|consen  251 SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILR  330 (363)
T ss_pred             eCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        172 NEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       172 ~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                      +|++..|++.||++++|+.+.++.
T Consensus       331 ~efe~tmaLsGc~sv~ei~~~~v~  354 (363)
T KOG0538|consen  331 DEFELTMALSGCRSVKEITRNHVL  354 (363)
T ss_pred             HHHHHHHHHhCCCchhhhCcccee
Confidence            999999999999999999988643

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=100.00  E-value=1.3e-33  Score=248.40  Aligned_cols=159  Identities=47%  Similarity=0.836  Sum_probs=143.6

Q ss_pred             cchhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780         36 SSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA  115 (202)
Q Consensus        36 ~~~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~  115 (202)
                      ....+++.+.+.|+.++|+.|+++++.+++||+||+++++++++.+.++|+|+|+|+|||||++|+++++++.|.++++.
T Consensus       197 ~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~  276 (356)
T PF01070_consen  197 GAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAA  276 (356)
T ss_dssp             TCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHH
T ss_pred             chhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhh
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780        116 VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV  194 (202)
Q Consensus       116 ~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~  194 (202)
                      +++++|||++||||++.|++|++++||++|++||||++++...|++++.++++.|++||+..|.++|+++++||+++.+
T Consensus       277 ~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~  355 (356)
T PF01070_consen  277 VGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRRSLL  355 (356)
T ss_dssp             HTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGE
T ss_pred             hcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhc
Confidence            8779999999999999999999999999999999999998889999999999999999999999999999999998865

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=100.00  E-value=3.4e-32  Score=238.99  Aligned_cols=158  Identities=58%  Similarity=1.010  Sum_probs=149.3

Q ss_pred             hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      +...+.....|+.++|+.|+|+|+.+++||++|++.+.++++.+.++|+|+|+|+||||+++++.+++++.|.++++.+.
T Consensus       198 ~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~  277 (367)
T PLN02493        198 GLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQ  277 (367)
T ss_pred             hHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhC
Confidence            44556777889999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                      +++|||++||||++.|++|++++||++|++||+|++++...|.+++.++++.++.||+..|.++|++++.++++..+.
T Consensus       278 ~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~  355 (367)
T PLN02493        278 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHIT  355 (367)
T ss_pred             CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhh
Confidence            789999999999999999999999999999999999998999999999999999999999999999999999887653

>PLN02979 glycolate oxidase

Probab=100.00  E-value=4.3e-32  Score=236.98  Aligned_cols=158  Identities=58%  Similarity=1.010  Sum_probs=149.2

Q ss_pred             hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      +...+.....||.++|+.|+|+|+.+++||++|++.+.++|+.+.++|+|+|+|+||||+++++.+++++.|.++++.+.
T Consensus       197 ~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~  276 (366)
T PLN02979        197 GLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQ  276 (366)
T ss_pred             hHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhC
Confidence            44556777889999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                      +++|||++|||+++.|++|++++||++|++||++++++...|.+++.++++.+++||+..|.++|+++++++.+..+.
T Consensus       277 ~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~  354 (366)
T PLN02979        277 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHIT  354 (366)
T ss_pred             CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhh
Confidence            789999999999999999999999999999999999988999999999999999999999999999999999887653

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=100.00  E-value=6.5e-32  Score=237.36  Aligned_cols=154  Identities=38%  Similarity=0.651  Sum_probs=147.3

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      ..++.++|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||+++++++++++.|.++++++++++|||++
T Consensus       210 ~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d  289 (367)
T TIGR02708       210 SAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD  289 (367)
T ss_pred             ccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee
Confidence            34688999999999999999999999999999999999999999999999999999999999999998888778999999


Q ss_pred             cCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccccccc
Q psy16780        126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY  199 (202)
Q Consensus       126 GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~~  199 (202)
                      |||+++.|++|++++||++|++|||+++++...|.+++.++++.|+.||+..|.++|+++++||++.++.+..|
T Consensus       290 GGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~~  363 (367)
T TIGR02708       290 SGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPY  363 (367)
T ss_pred             CCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCCC
Confidence            99999999999999999999999999999989999999999999999999999999999999999999988776

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=99.98  E-value=3.3e-31  Score=234.22  Aligned_cols=155  Identities=46%  Similarity=0.805  Sum_probs=146.3

Q ss_pred             hHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         39 LLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        39 ~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .....+...|+.++|+.|+++++.+++||++|++.+.++++.+.++|+|+|+|+||||++.+++++++..|.++++.+.+
T Consensus       228 ~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~  307 (383)
T cd03332         228 VARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGD  307 (383)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcC
Confidence            33445556799999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                      ++|||++|||+++.|++|++++||++|++||+|++++...|.+++.++++.++.||+..|.++|+++++||++..
T Consensus       308 ~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~  382 (383)
T cd03332         308 RLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDA  382 (383)
T ss_pred             CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCccc
Confidence            899999999999999999999999999999999999889999999999999999999999999999999998764

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=99.98  E-value=3.2e-31  Score=233.98  Aligned_cols=156  Identities=42%  Similarity=0.763  Sum_probs=147.6

Q ss_pred             HHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        41 ~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      .+.....||.++|+.|++|++.+++||++|++.+.++++.+.++|+|+|+|+|||||++++.+++...|.++++.+..++
T Consensus       222 ~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~  301 (381)
T PRK11197        222 GWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDI  301 (381)
T ss_pred             HHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCC
Confidence            45666789999999999999999999999999999999999999999999999999999988889999999988776689


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                      |||++|||+++.|++|++++||++|++||+|++++...|.+++.++++.|++||+..|.++|+++++||++..++.
T Consensus       302 ~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~  377 (381)
T PRK11197        302 TILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ  377 (381)
T ss_pred             eEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence            9999999999999999999999999999999999989999999999999999999999999999999999887643

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=99.98  E-value=8.7e-31  Score=229.80  Aligned_cols=150  Identities=47%  Similarity=0.804  Sum_probs=142.9

Q ss_pred             hHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         39 LLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        39 ~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      ...+...++|+.++|+.|++|++.++.|+++|++.++++++.+.++|+|+|+|+|||||++++.+++++.+.++++.+  
T Consensus       211 ~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--  288 (361)
T cd04736         211 QAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--  288 (361)
T ss_pred             HHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--
Confidence            445666789999999999999999999999999999999999999999999999999999999889999999998877  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ  190 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~  190 (202)
                      ++|||++|||+++.|++|++++||++|++||||++++...|.+++.++++.|++||+..|.++|+++++||.
T Consensus       289 ~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~  360 (361)
T cd04736         289 YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT  360 (361)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence            599999999999999999999999999999999999888999999999999999999999999999999985

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02535 glycolate oxidase

Probab=99.97  E-value=1.7e-30  Score=228.30  Aligned_cols=159  Identities=55%  Similarity=0.954  Sum_probs=149.7

Q ss_pred             hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      ++..+.....|+.++|+.|+++++.+++||++|++.++++++.+.++|+|+|+++||||++++.+++++..+.++++.+.
T Consensus       197 ~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~  276 (364)
T PLN02535        197 GLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVG  276 (364)
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHh
Confidence            45567777889999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                      .++|||++|||+++.|++|++++||++|++||+|++++...|.+++.+.++.+++||+..|.++|+.+++||++..+.+
T Consensus       277 ~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~  355 (364)
T PLN02535        277 GRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRT  355 (364)
T ss_pred             cCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccc
Confidence            6899999999999999999999999999999999999888999999999999999999999999999999999987653

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=99.97  E-value=2.1e-30  Score=227.26  Aligned_cols=149  Identities=45%  Similarity=0.767  Sum_probs=142.0

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      ..++.++|+.++++++.+++||++|++.++++++.+.++|+|+|+|+||||+++++++++++.++++++++.+++|||++
T Consensus       203 ~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d  282 (351)
T cd04737         203 AAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD  282 (351)
T ss_pred             hccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE
Confidence            45778899999999999999999999999999999999999999999999999999998999999998888778999999


Q ss_pred             cCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780        126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV  194 (202)
Q Consensus       126 GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~  194 (202)
                      |||+++.|++|++++||++|++||++++++...|.+++.++++.+++||+.+|.++|+++++|+++.++
T Consensus       283 GGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~  351 (351)
T cd04737         283 SGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL  351 (351)
T ss_pred             CCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence            999999999999999999999999999999899999999999999999999999999999999987653

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=99.97  E-value=8.6e-31  Score=229.90  Aligned_cols=159  Identities=44%  Similarity=0.656  Sum_probs=151.1

Q ss_pred             HHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         40 LAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        40 ~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      .++.....+|..+|+.+.+|++.+..|+++|++.++++++.+.+.|+++|.++||||+++|+++++.++|++++++++++
T Consensus       194 ~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~  273 (360)
T COG1304         194 AEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDR  273 (360)
T ss_pred             HHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCC
Confidence            45566778899999999999999999999999999999999999999999999999999999999999999999999878


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccccc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET  198 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~  198 (202)
                      ++|++|||||+|.|++||+++||++|++||||++++...|.++|.+.++.+++||+..|.++|+++++||++.+++...
T Consensus       274 ~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~  352 (360)
T COG1304         274 IEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSG  352 (360)
T ss_pred             eEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999877543

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=99.97  E-value=7.4e-29  Score=217.21  Aligned_cols=151  Identities=50%  Similarity=0.825  Sum_probs=140.0

Q ss_pred             HHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH---hC
Q psy16780         41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA---VG  117 (202)
Q Consensus        41 ~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~  117 (202)
                      .++....|+..+|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||++++..++++..|.++++.   +.
T Consensus       190 ~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~  269 (344)
T cd02922         190 RAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVF  269 (344)
T ss_pred             HHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence            345556788899999999999999999999999999999999999999999999999999888888888888764   34


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                      +++|||++|||+++.|++|++++||++|++||+|++++.+.|.+++.++++.+++||+.+|..+|+++++||++
T Consensus       270 ~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~  343 (344)
T cd02922         270 DKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLGP  343 (344)
T ss_pred             CCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence            57999999999999999999999999999999999998888999999999999999999999999999999975

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=99.96  E-value=2.1e-28  Score=215.22  Aligned_cols=182  Identities=24%  Similarity=0.379  Sum_probs=156.4

Q ss_pred             ccCCcceecccCCCcc----ccc-----CCCCcchh-------HHHhhhccCcccc--HHHHHHHHHhcCCCEEEEec--
Q psy16780         13 LVLSQYLLANFSGKLS----QLS-----NTSDSSSL-------LAYITSQLDETIN--WSDVTWLKTITKLPIVLKGI--   72 (202)
Q Consensus        13 ~~p~~~~~~n~~~~~~----~~~-----~~~~~~~~-------~~~~~~~~d~~~~--~~~i~~i~~~~~~Pv~vK~~--   72 (202)
                      ..|++++++|+++.+.    ++.     +++.++++       |+.++++++++|.  .+.++++++.+++||++|++  
T Consensus       117 ~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~  196 (352)
T PRK05437        117 VAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGF  196 (352)
T ss_pred             HCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence            4699999999999754    222     24445443       5778999998873  57999999999999999998  


Q ss_pred             -cCHHHHHHHHHcCCcEEEeeccCcCCC------------------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780         73 -LTAEDAKIGVEMGASAIMVSNHGGRQL------------------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD  133 (202)
Q Consensus        73 -~~~~~a~~l~~aG~d~I~v~~~gg~~~------------------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D  133 (202)
                       .+.++++.+.++|+|+|+|+|+||+.+                  +++.++...+.++++.+ .++|||++|||+++.|
T Consensus       197 g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~d  275 (352)
T PRK05437        197 GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLD  275 (352)
T ss_pred             CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHH
Confidence             789999999999999999999887431                  33567788888887763 3799999999999999


Q ss_pred             HHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        134 VFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       134 ~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                      +.|++++|||+|++||+|++++...|.+++.++++.+.+||+.+|..+|+++++||++.+++
T Consensus       276 v~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~  337 (352)
T PRK05437        276 IAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVPLV  337 (352)
T ss_pred             HHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEE
Confidence            99999999999999999999877889999999999999999999999999999999998654

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=99.96  E-value=2.2e-28  Score=213.82  Aligned_cols=182  Identities=25%  Similarity=0.384  Sum_probs=153.5

Q ss_pred             ccCCcceecccCCCccccc---------CCCCcchh-------HHHhhhccCcccc--HHHHHHHHHhcCCCEEEEec--
Q psy16780         13 LVLSQYLLANFSGKLSQLS---------NTSDSSSL-------LAYITSQLDETIN--WSDVTWLKTITKLPIVLKGI--   72 (202)
Q Consensus        13 ~~p~~~~~~n~~~~~~~~~---------~~~~~~~~-------~~~~~~~~d~~~~--~~~i~~i~~~~~~Pv~vK~~--   72 (202)
                      ..|+.+.++|+++.+..+.         ++++++++       |+.++++++++|.  .+.++++++.+++||++|++  
T Consensus       110 ~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~  189 (333)
T TIGR02151       110 EAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGF  189 (333)
T ss_pred             hCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            3799999999998654331         34555554       6778899998873  37999999999999999988  


Q ss_pred             -cCHHHHHHHHHcCCcEEEeeccCcCCC------------------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780         73 -LTAEDAKIGVEMGASAIMVSNHGGRQL------------------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD  133 (202)
Q Consensus        73 -~~~~~a~~l~~aG~d~I~v~~~gg~~~------------------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D  133 (202)
                       .+.+.++.+.++|+|+|+|+|+||+.+                  +++.++...+.++++ +..++|||++|||+++.|
T Consensus       190 g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~d  268 (333)
T TIGR02151       190 GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLD  268 (333)
T ss_pred             CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHH
Confidence             789999999999999999999887642                  224455566777655 223799999999999999


Q ss_pred             HHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        134 VFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       134 ~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                      +.|++++|||+|++||+|+......|++++.++++.+.+||+.+|..+|+++++||++.+++
T Consensus       269 i~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~  330 (333)
T TIGR02151       269 VAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVPLV  330 (333)
T ss_pred             HHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCCeE
Confidence            99999999999999999998876689999999999999999999999999999999998764

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=99.96  E-value=6.4e-28  Score=210.31  Aligned_cols=177  Identities=25%  Similarity=0.379  Sum_probs=148.7

Q ss_pred             ccCCcceecccCCCcc----ccc-----CCCCcch-------hHHHhhhccCcccc--HHHHHHHHHhcCCCEEEEec--
Q psy16780         13 LVLSQYLLANFSGKLS----QLS-----NTSDSSS-------LLAYITSQLDETIN--WSDVTWLKTITKLPIVLKGI--   72 (202)
Q Consensus        13 ~~p~~~~~~n~~~~~~----~~~-----~~~~~~~-------~~~~~~~~~d~~~~--~~~i~~i~~~~~~Pv~vK~~--   72 (202)
                      -.|++++++|+++.+.    .+.     +++++++       .|+..++++++++.  .+.|+++++.+++||++|++  
T Consensus       109 ~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~  188 (326)
T cd02811         109 APPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGF  188 (326)
T ss_pred             hCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            4678999999998652    222     2344444       45778888988873  37899999999999999998  


Q ss_pred             -cCHHHHHHHHHcCCcEEEeeccCcCCC--------------------CCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         73 -LTAEDAKIGVEMGASAIMVSNHGGRQL--------------------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        73 -~~~~~a~~l~~aG~d~I~v~~~gg~~~--------------------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                       .+.++++.+.++|+|+|+++|+||+.+                    +++.++...+.++++.+. ++|||++|||+++
T Consensus       189 g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~  267 (326)
T cd02811         189 GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNG  267 (326)
T ss_pred             CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCH
Confidence             789999999999999999999888531                    124456677788776653 7999999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                      .|++|++++|||+|++||+|++++.. |.+++.++++.|.+||+.+|.++|+++++||++
T Consensus       268 ~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~  326 (326)
T cd02811         268 LDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ  326 (326)
T ss_pred             HHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence            99999999999999999999998656 999999999999999999999999999999974

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.96  E-value=8.3e-28  Score=207.31  Aligned_cols=141  Identities=56%  Similarity=0.974  Sum_probs=133.9

Q ss_pred             ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      +.++.++++++.+++||++|++.++++++.+.++|+|+|+++||||++.+++++++..+.++++.+..++|||++|||++
T Consensus       159 ~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~  238 (299)
T cd02809         159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR  238 (299)
T ss_pred             CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999888865799999999999


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                      +.|++|++++|||+|++||+|++++.+.|.+++.++++.+++||+.+|..+|+++++||++
T Consensus       239 ~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~~  299 (299)
T cd02809         239 GTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP  299 (299)
T ss_pred             HHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence            9999999999999999999999988788999999999999999999999999999999863

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=99.91  E-value=2.2e-23  Score=185.81  Aligned_cols=157  Identities=27%  Similarity=0.278  Sum_probs=132.3

Q ss_pred             HHHhhhccCcccc-----HHHHHHHHHhcC-CCEEEEecc--CHHHHHHHHHcC-CcEEEeeccCc-CC-------CCCc
Q psy16780         40 LAYITSQLDETIN-----WSDVTWLKTITK-LPIVLKGIL--TAEDAKIGVEMG-ASAIMVSNHGG-RQ-------LDYV  102 (202)
Q Consensus        40 ~~~~~~~~d~~~~-----~~~i~~i~~~~~-~Pv~vK~~~--~~~~a~~l~~aG-~d~I~v~~~gg-~~-------~~~~  102 (202)
                      ++.+++..++++.     .+.|+++|+.++ +||++|++.  +.+++..+.+.| +|+|+|+|++| +.       .+++
T Consensus       184 ~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g  263 (392)
T cd02808         184 VDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVG  263 (392)
T ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCC
Confidence            4678888888885     679999999998 999999985  466665555555 99999999854 32       2356


Q ss_pred             cchHHHHHHHHHHh-----CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc-------------------
Q psy16780        103 PASIEALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS-------------------  158 (202)
Q Consensus       103 ~~~~~~l~~i~~~~-----~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~-------------------  158 (202)
                      .|+...|.++++.+     +.++|||++|||+++.|++|++++|||+|.+||+|++++.|.                   
T Consensus       264 ~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~  343 (392)
T cd02808         264 LPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDP  343 (392)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCCh
Confidence            78888888887655     347999999999999999999999999999999999876443                   


Q ss_pred             ----------ChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        159 ----------GKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       159 ----------G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                                |.+++.++++.+.+||+.+|..+|++++++|++.+++.
T Consensus       344 ~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~~  391 (392)
T cd02808         344 ELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLLA  391 (392)
T ss_pred             HhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhhc
Confidence                      67889999999999999999999999999999988764

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=99.89  E-value=1.3e-22  Score=176.28  Aligned_cols=190  Identities=17%  Similarity=0.174  Sum_probs=143.4

Q ss_pred             chhhhhhccccccCCcceecccCCCccccc-----CCCCc----chhHHHhhhccCccccHHHHHHHHHhcC-CCEEEEe
Q psy16780          2 DIYWMKSSLVCLVLSQYLLANFSGKLSQLS-----NTSDS----SSLLAYITSQLDETINWSDVTWLKTITK-LPIVLKG   71 (202)
Q Consensus         2 ~~~~~~~~~~~~~p~~~~~~n~~~~~~~~~-----~~~~~----~~~~~~~~~~~d~~~~~~~i~~i~~~~~-~Pv~vK~   71 (202)
                      +++.-++..+...|+++ ++|......++.     ..+++    +.++. -.+.++.+...+.|++||+.++ +||++|.
T Consensus        70 ~~e~~~~~~r~~~~~~l-~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~i-D~a~gh~~~~~e~I~~ir~~~p~~~vi~g~  147 (326)
T PRK05458         70 DPEARIPFIKDMHEQGL-IASISVGVKDDEYDFVDQLAAEGLTPEYITI-DIAHGHSDSVINMIQHIKKHLPETFVIAGN  147 (326)
T ss_pred             CHHHHHHHHHhcccccc-EEEEEecCCHHHHHHHHHHHhcCCCCCEEEE-ECCCCchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            44444444455577777 888876543332     12233    33321 1223677778889999999985 8999998


Q ss_pred             ccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccch--HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         72 ILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPAS--IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        72 ~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~--~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                      +.+.++++.+.++|+|++.+++++|+..      ..+.++  +..+.++++.+  ++|||++|||+++.|++|++++||+
T Consensus       148 V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~  225 (326)
T PRK05458        148 VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGAT  225 (326)
T ss_pred             cCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCC
Confidence            9999999999999999999999988542      123454  34588887776  7999999999999999999999999


Q ss_pred             EEEEcHHHHH------------------Hh-----hh-------cChH-------HHHHHHHHHHHHHHHHHHHhCCCCH
Q psy16780        144 MVFVGRPALW------------------GL-----AH-------SGKS-------GVRKVLDILINEFDQALALSGCTSV  186 (202)
Q Consensus       144 ~V~ig~~~l~------------------~~-----~~-------~G~~-------~v~~~i~~l~~~L~~~m~~~G~~~i  186 (202)
                      +||+|++|+.                  ..     ..       +|.+       .+.+++..+..+|+..|.++|+.++
T Consensus       226 aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i  305 (326)
T PRK05458        226 MVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDL  305 (326)
T ss_pred             EEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            9999999981                  11     01       2333       5889999999999999999999999


Q ss_pred             Hhhhhcccc
Q psy16780        187 GEIQREMVV  195 (202)
Q Consensus       187 ~el~~~~~~  195 (202)
                      .||++..++
T Consensus       306 ~el~~~~~v  314 (326)
T PRK05458        306 DAIRKVDYV  314 (326)
T ss_pred             HHHhcCCEE
Confidence            999976444

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=99.86  E-value=1e-20  Score=163.47  Aligned_cols=149  Identities=21%  Similarity=0.212  Sum_probs=125.0

Q ss_pred             hhccCccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEee-----ccCcCCCCCcc-chHHHHHHHHHHh
Q psy16780         44 TSQLDETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVS-----NHGGRQLDYVP-ASIEALPEIAKAV  116 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~-----~~gg~~~~~~~-~~~~~l~~i~~~~  116 (202)
                      ...|+.+...+.|++||+.++-+.++|+ +.+++.++.++++|||+|.|+     ++++++.++.. |++.++.++++++
T Consensus       129 ~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa  208 (343)
T TIGR01305       129 VANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAA  208 (343)
T ss_pred             CCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHh
Confidence            3477888889999999999976666676 899999999999999999998     45666777654 8999999998887


Q ss_pred             CC-CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------------c
Q psy16780        117 GH-KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-----------------S  158 (202)
Q Consensus       117 ~~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-----------------~  158 (202)
                      .. ++|||++|||+++.|++||+++|||+||+|+.|.-.                    +.+                 +
T Consensus       209 ~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~E  288 (343)
T TIGR01305       209 HGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASE  288 (343)
T ss_pred             ccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCccccccccc
Confidence            65 799999999999999999999999999999866521                    000                 1


Q ss_pred             Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        159 GK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       159 G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      |.       -.+.+++.++..+|+..|.++|..+++||+++
T Consensus       289 G~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~  329 (343)
T TIGR01305       289 GKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR  329 (343)
T ss_pred             CceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence            10       12788999999999999999999999999765

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=99.84  E-value=5.7e-20  Score=159.22  Aligned_cols=189  Identities=19%  Similarity=0.160  Sum_probs=136.9

Q ss_pred             hhhhhccccccCCcceecccCCCccccc-C----CCCcchh--H--HHhhhccCccccHHHHHHHHHhcCCCEE-EEecc
Q psy16780          4 YWMKSSLVCLVLSQYLLANFSGKLSQLS-N----TSDSSSL--L--AYITSQLDETINWSDVTWLKTITKLPIV-LKGIL   73 (202)
Q Consensus         4 ~~~~~~~~~~~p~~~~~~n~~~~~~~~~-~----~~~~~~~--~--~~~~~~~d~~~~~~~i~~i~~~~~~Pv~-vK~~~   73 (202)
                      +|.+ ..+...|.++ +.|+......++ +    ..++ ++  .  ..-...|+.....+.|+++|+.++.|.+ .|.+.
T Consensus        70 ~~~s-fvrk~k~~~L-~v~~SvG~t~e~~~r~~~lv~a-~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~  146 (321)
T TIGR01306        70 SRIP-FIKDMQERGL-FASISVGVKACEYEFVTQLAEE-ALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG  146 (321)
T ss_pred             HHHH-HHHhcccccc-EEEEEcCCCHHHHHHHHHHHhc-CCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3444 3444456554 777776654433 1    1111 11  0  0123466778889999999999988854 44589


Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCC--------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQL--------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV  145 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~--------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V  145 (202)
                      +.+.++.+.++|+|+|.|+.++|+.-        ....+.+.++.++++.+  ++|||++|||+++.|++|||++|||+|
T Consensus       147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~V  224 (321)
T TIGR01306       147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMV  224 (321)
T ss_pred             CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence            99999999999999999997655421        11123566888888876  799999999999999999999999999


Q ss_pred             EEcHHHHHH--------------------hh--h--------cC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHh
Q psy16780        146 FVGRPALWG--------------------LA--H--------SG-------KSGVRKVLDILINEFDQALALSGCTSVGE  188 (202)
Q Consensus       146 ~ig~~~l~~--------------------~~--~--------~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~e  188 (202)
                      |+||+|.-.                    +.  .        +|       .-.+.+++.++..+||..|.++|+.+++|
T Consensus       225 mig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~  304 (321)
T TIGR01306       225 MIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDS  304 (321)
T ss_pred             eechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence            999988521                    00  0        11       01378999999999999999999999999


Q ss_pred             hhhcccccc
Q psy16780        189 IQREMVVHE  197 (202)
Q Consensus       189 l~~~~~~~~  197 (202)
                      |++..++..
T Consensus       305 ~~~~~~~~~  313 (321)
T TIGR01306       305 LRTVDYVIV  313 (321)
T ss_pred             HhhCCEEEE
Confidence            997755543

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=99.81  E-value=3.6e-19  Score=155.27  Aligned_cols=180  Identities=19%  Similarity=0.203  Sum_probs=128.3

Q ss_pred             hhhhhhcccc-ccCCcceecccCCCccccc-------CCCCcchhHHHhhh-ccCc--------cccHHHHHHHHHhcCC
Q psy16780          3 IYWMKSSLVC-LVLSQYLLANFSGKLSQLS-------NTSDSSSLLAYITS-QLDE--------TINWSDVTWLKTITKL   65 (202)
Q Consensus         3 ~~~~~~~~~~-~~p~~~~~~n~~~~~~~~~-------~~~~~~~~~~~~~~-~~d~--------~~~~~~i~~i~~~~~~   65 (202)
                      .+|++...+. ...+.++++|++.....+.       +...+++++..+.. ..++        +...++++++++.+++
T Consensus        85 ~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~i  164 (325)
T cd04739          85 EEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTI  164 (325)
T ss_pred             HHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence            3566655443 2346778899876432111       11223444332221 1122        2346799999999999


Q ss_pred             CEEEEeccC----HHHHHHHHHcCCcEEEeeccCc-CCCC---------C---cc----chHHHHHHHHHHhCCCcEEEE
Q psy16780         66 PIVLKGILT----AEDAKIGVEMGASAIMVSNHGG-RQLD---------Y---VP----ASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        66 Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg-~~~~---------~---~~----~~~~~l~~i~~~~~~~ipiia  124 (202)
                      ||++|++.+    .+.++.+.++|+|+|+++|+.. ...+         +   ++    ..++.+.++++.+  ++|||+
T Consensus       165 Pv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig  242 (325)
T cd04739         165 PVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAA  242 (325)
T ss_pred             CEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEE
Confidence            999998843    4678889999999999998631 1111         1   11    1234455665555  799999


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      +|||+|++|+.+++.+|||+|++||+++.    +|+    .++..+.++|+.+|...|+++++|+++.
T Consensus       243 ~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~l~~~g~~~i~e~~G~  302 (325)
T cd04739         243 SGGVHDAEDVVKYLLAGADVVMTTSALLR----HGP----DYIGTLLAGLEAWMEEHGYESVQQLRGS  302 (325)
T ss_pred             ECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCc----hHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence            99999999999999999999999999986    466    4778999999999999999999999885

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=99.80  E-value=6.9e-19  Score=151.67  Aligned_cols=143  Identities=22%  Similarity=0.295  Sum_probs=119.7

Q ss_pred             hhhcc-CccccHHHHHHHHHhcCCCEEEEeccCH----HHHHHHHHcCCcEEEeeccCcCC--C------------CC--
Q psy16780         43 ITSQL-DETINWSDVTWLKTITKLPIVLKGILTA----EDAKIGVEMGASAIMVSNHGGRQ--L------------DY--  101 (202)
Q Consensus        43 ~~~~~-d~~~~~~~i~~i~~~~~~Pv~vK~~~~~----~~a~~l~~aG~d~I~v~~~gg~~--~------------~~--  101 (202)
                      ....+ ||+...++++++++.+++||++|+..+.    +.|+.+.++|+|+|++.|+....  .            .+  
T Consensus       139 ~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGL  218 (310)
T COG0167         139 GRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGL  218 (310)
T ss_pred             hhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCc
Confidence            44555 8889999999999999999999998653    45788999999999999953211  0            11  


Q ss_pred             -c----cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        102 -V----PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       102 -~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                       |    +.....++++++.+++++|||++|||.|++|+++.+.+||++|+++|++++    .|+    .+++.+.++|..
T Consensus       219 SG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~  290 (310)
T COG0167         219 SGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLAR  290 (310)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHH
Confidence             2    224556788888887789999999999999999999999999999999986    577    577899999999


Q ss_pred             HHHHhCCCCHHhhhhcc
Q psy16780        177 ALALSGCTSVGEIQREM  193 (202)
Q Consensus       177 ~m~~~G~~~i~el~~~~  193 (202)
                      +|...|+.+++|+++..
T Consensus       291 ~l~~~g~~si~d~iG~~  307 (310)
T COG0167         291 WLEEKGFESIQDIIGSA  307 (310)
T ss_pred             HHHHcCCCCHHHHhchh
Confidence            99999999999999864

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.80  E-value=8.6e-19  Score=160.49  Aligned_cols=149  Identities=23%  Similarity=0.329  Sum_probs=121.0

Q ss_pred             hhccCccccHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-----C-CCCCccchHHHHHHHHHH
Q psy16780         44 TSQLDETINWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----R-QLDYVPASIEALPEIAKA  115 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-----~-~~~~~~~~~~~l~~i~~~  115 (202)
                      .+.+......+.|+++|+.++  ++|+.+.+.+++.++.+.++|||+|.|++++|     + +...+.|++.++.+++++
T Consensus       262 ~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a  341 (502)
T PRK07107        262 SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKA  341 (502)
T ss_pred             CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHH
Confidence            344555566889999999886  45555558999999999999999999999888     4 455678888988888775


Q ss_pred             h-------CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------
Q psy16780        116 V-------GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-----------  157 (202)
Q Consensus       116 ~-------~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-----------  157 (202)
                      +       +.++|||++|||+++.|++|||++|||+||+||+|.-.                    +.+           
T Consensus       342 ~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~  421 (502)
T PRK07107        342 RDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDL  421 (502)
T ss_pred             HHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhcccccc
Confidence            4       22499999999999999999999999999999998631                    100           


Q ss_pred             ---------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 ---------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 ---------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                               +|.       -.+.+++.++..+|+..|.++|..+++||+.+
T Consensus       422 ~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~  472 (502)
T PRK07107        422 GGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK  472 (502)
T ss_pred             ccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence                     010       12788999999999999999999999999866

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.79  E-value=3.2e-18  Score=149.81  Aligned_cols=131  Identities=20%  Similarity=0.257  Sum_probs=106.7

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccCc-CCC---------CCc---c----chHHHHH
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHGG-RQL---------DYV---P----ASIEALP  110 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg-~~~---------~~~---~----~~~~~l~  110 (202)
                      .+++++++++.+++||++|+...    .+.++.+.++|+|+|+++|+.. ...         .++   +    ..++.+.
T Consensus       153 ~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~  232 (334)
T PRK07565        153 YLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA  232 (334)
T ss_pred             HHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH
Confidence            57899999999999999998743    4667889999999999988631 111         111   1    1234455


Q ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780        111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ  190 (202)
Q Consensus       111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~  190 (202)
                      ++++.+  ++|||++|||+|++|+.+++.+|||+|++||+++.    +|+    ++++.+.++|+.+|...|+++++|++
T Consensus       233 ~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~  302 (334)
T PRK07565        233 ILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGLEDWMERHGYESLQQFR  302 (334)
T ss_pred             HHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            565555  79999999999999999999999999999999986    455    57789999999999999999999998


Q ss_pred             hc
Q psy16780        191 RE  192 (202)
Q Consensus       191 ~~  192 (202)
                      +.
T Consensus       303 g~  304 (334)
T PRK07565        303 GS  304 (334)
T ss_pred             cc
Confidence            85

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.78  E-value=3.4e-18  Score=151.11  Aligned_cols=145  Identities=24%  Similarity=0.324  Sum_probs=112.6

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC--------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG--------  117 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~--------  117 (202)
                      .++.+.++++..++||+++.+.+.+.++.+.++|||+|.++.++|+.      ...+.|.+.++.++++..+        
T Consensus       175 ~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~  254 (368)
T PRK08649        175 EPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGG  254 (368)
T ss_pred             CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcC
Confidence            35556666666799999988999999999999999999886444421      1224567777776654321        


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh-----------------cCh-------HHHHHHHH-----
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH-----------------SGK-------SGVRKVLD-----  168 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~-----------------~G~-------~~v~~~i~-----  168 (202)
                      .++|||++|||+++.|++|++++|||+||+|++|+....+                 +|.       -.+.+++.     
T Consensus       255 ~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~  334 (368)
T PRK08649        255 RYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHL  334 (368)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhcCcccc
Confidence            1599999999999999999999999999999999853211                 111       13777877     


Q ss_pred             -----HHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        169 -----ILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       169 -----~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                           ++..+||..|.++|+.+++||++..+++
T Consensus       335 ~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~  367 (368)
T PRK08649        335 PDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV  367 (368)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence                 9999999999999999999999886654

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=99.78  E-value=8.2e-18  Score=144.59  Aligned_cols=135  Identities=24%  Similarity=0.290  Sum_probs=110.9

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC-cCCC---------------CCcc---
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG-GRQL---------------DYVP---  103 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g-g~~~---------------~~~~---  103 (202)
                      .++++..++++++++.+++||++|+..+    .+.++.+.++|+|+|+++|+. |...               .+++   
T Consensus       137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~  216 (296)
T cd04740         137 TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIK  216 (296)
T ss_pred             CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccc
Confidence            5778888999999999999999998743    355788999999999998741 2110               0111   


Q ss_pred             -chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q psy16780        104 -ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSG  182 (202)
Q Consensus       104 -~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G  182 (202)
                       ..++.+.++++.+  ++|||++|||++++|+.+++++|||+|++||+++.     ++    .+++.++++|+.+|+..|
T Consensus       217 ~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p----~~~~~i~~~l~~~~~~~g  285 (296)
T cd04740         217 PIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP----EAFKEIIEGLEAYLDEEG  285 (296)
T ss_pred             hHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch----HHHHHHHHHHHHHHHHcC
Confidence             1345677777766  79999999999999999999999999999999985     45    577899999999999999


Q ss_pred             CCCHHhhhhc
Q psy16780        183 CTSVGEIQRE  192 (202)
Q Consensus       183 ~~~i~el~~~  192 (202)
                      +++++|+++.
T Consensus       286 ~~~~~~~~g~  295 (296)
T cd04740         286 IKSIEELVGL  295 (296)
T ss_pred             CCCHHHHhCc
Confidence            9999999863

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=99.77  E-value=4.9e-18  Score=146.27  Aligned_cols=136  Identities=24%  Similarity=0.265  Sum_probs=111.0

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC-cCCC------------C---Cccc-
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG-GRQL------------D---YVPA-  104 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g-g~~~------------~---~~~~-  104 (202)
                      ..+|++..++++++|+.+++||++|+..+    .+.++.+.++|+|+|+++|+- ++..            .   .+++ 
T Consensus       139 ~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~  218 (300)
T TIGR01037       139 GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAI  218 (300)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhh
Confidence            35788889999999999999999999854    355788999999999998742 2110            0   1121 


Q ss_pred             ---hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy16780        105 ---SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALS  181 (202)
Q Consensus       105 ---~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~  181 (202)
                         .++.+.++++.+  ++|||++|||++++|+.+++.+|||+|++||++++.     +    .+++.++++|+.+|...
T Consensus       219 ~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~-----p----~~~~~i~~~l~~~~~~~  287 (300)
T TIGR01037       219 KPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR-----G----FAFKKIIEGLIAFLKAE  287 (300)
T ss_pred             hHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC-----c----hHHHHHHHHHHHHHHHc
Confidence               235566777766  699999999999999999999999999999999862     2    57889999999999999


Q ss_pred             CCCCHHhhhhc
Q psy16780        182 GCTSVGEIQRE  192 (202)
Q Consensus       182 G~~~i~el~~~  192 (202)
                      |+++++|+++.
T Consensus       288 g~~~~~e~~g~  298 (300)
T TIGR01037       288 GFTSIEELIGI  298 (300)
T ss_pred             CCCCHHHHhCc
Confidence            99999999874

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=99.77  E-value=4.1e-18  Score=149.11  Aligned_cols=148  Identities=24%  Similarity=0.322  Sum_probs=118.2

Q ss_pred             hccCccccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~  117 (202)
                      ..++.+...+.++++|+.++ +||+++.+.|.+.++.|.++|||+|.|+-.+|..      .--+.|.+.++.++++...
T Consensus       129 a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~  208 (352)
T PF00478_consen  129 AHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAAR  208 (352)
T ss_dssp             SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhh
Confidence            46788888899999999985 9999999999999999999999999997665531      1225678888888766552


Q ss_pred             -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------------hhh-------------
Q psy16780        118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------------LAH-------------  157 (202)
Q Consensus       118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------------~~~-------------  157 (202)
                       ..+|||++|||+++.|++|||++|||+||+|+.|.-.                          +..             
T Consensus       209 ~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~  288 (352)
T PF00478_consen  209 DYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAED  288 (352)
T ss_dssp             CTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTS
T ss_pred             hccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhcccccc
Confidence             3699999999999999999999999999999977621                          000             


Q ss_pred             -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                           +|.       -.+.+++..|..+|+..|.++|+.+|+||+++
T Consensus       289 ~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~  335 (352)
T PF00478_consen  289 KKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKK  335 (352)
T ss_dssp             STSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHH
T ss_pred             ccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence                 111       22789999999999999999999999999987

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.77  E-value=4.5e-18  Score=154.86  Aligned_cols=148  Identities=26%  Similarity=0.300  Sum_probs=122.1

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~  117 (202)
                      ..+++....+.+++|++.+ ++||++..+.|.+.++.+.++|+|+|.|+..+|+.-      ..+.++...+.++++...
T Consensus       246 a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~  325 (475)
T TIGR01303       246 AHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEAR  325 (475)
T ss_pred             CCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHH
Confidence            3578888899999999986 899999889999999999999999999998877531      235677777777654432


Q ss_pred             -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH---------------------------hh-------------
Q psy16780        118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG---------------------------LA-------------  156 (202)
Q Consensus       118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~---------------------------~~-------------  156 (202)
                       ..+|||++|||+++.|++|||++||++||+|+.|.-.                           +.             
T Consensus       326 ~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~  405 (475)
T TIGR01303       326 KLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRAR  405 (475)
T ss_pred             HcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhc
Confidence             2699999999999999999999999999999987411                           10             


Q ss_pred             ----hcChHH-----------HHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        157 ----HSGKSG-----------VRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       157 ----~~G~~~-----------v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                          .+|.++           +.+++.++..+|+..|.++|+.+++||+.+
T Consensus       406 ~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~  456 (475)
T TIGR01303       406 KALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER  456 (475)
T ss_pred             cccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence                022221           778999999999999999999999999876

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=99.77  E-value=4.7e-18  Score=146.90  Aligned_cols=149  Identities=19%  Similarity=0.167  Sum_probs=121.6

Q ss_pred             hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----CC--CCccchHHHHHHHHHHh
Q psy16780         44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----QL--DYVPASIEALPEIAKAV  116 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~~--~~~~~~~~~l~~i~~~~  116 (202)
                      ...|+.+...+.|++||+.+ +++|+.+.+.|++.++.|+++|||+|.|+-.+|.    +.  --+.|.+.++.+++++.
T Consensus       130 ~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a  209 (346)
T PRK05096        130 VANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAA  209 (346)
T ss_pred             CCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHH
Confidence            34678888899999999988 6999999999999999999999999999766552    22  12467788887776654


Q ss_pred             C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------------c
Q psy16780        117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-----------------S  158 (202)
Q Consensus       117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-----------------~  158 (202)
                      . ..+|||++|||+++.|++|||++|||+||+|+.|.-.                    +.+                 +
T Consensus       210 ~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~E  289 (346)
T PRK05096        210 HGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAE  289 (346)
T ss_pred             HHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCccccccccc
Confidence            3 3699999999999999999999999999999987521                    100                 0


Q ss_pred             Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        159 GK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       159 G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      |.       -.+.+++.++..+|+..|.++|..+++||+++
T Consensus       290 G~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~  330 (346)
T PRK05096        290 GKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR  330 (346)
T ss_pred             CceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence            10       12789999999999999999999999999765

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=99.77  E-value=1.2e-17  Score=144.04  Aligned_cols=135  Identities=23%  Similarity=0.323  Sum_probs=111.6

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccCH----HHHHHHHHcCCcEEEeecc-CcCC--C-------------CCc----
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILTA----EDAKIGVEMGASAIMVSNH-GGRQ--L-------------DYV----  102 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~----~~a~~l~~aG~d~I~v~~~-gg~~--~-------------~~~----  102 (202)
                      .++++..++++++|+.+++||++|+..+.    +.++.+.++|+|+|+++|+ .+..  .             ..+    
T Consensus       140 ~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~  219 (301)
T PRK07259        140 TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIK  219 (301)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcc
Confidence            46788999999999999999999998543    4578899999999998763 1210  0             011    


Q ss_pred             cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q psy16780        103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSG  182 (202)
Q Consensus       103 ~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G  182 (202)
                      +..++.+.++++.+  ++|||++|||++++|+.+++++|||+|++||++++     ++    .+++.++++++.+|...|
T Consensus       220 p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~P----~~~~~i~~~l~~~~~~~g  288 (301)
T PRK07259        220 PIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----DP----YAFPKIIEGLEAYLDKYG  288 (301)
T ss_pred             cccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----Cc----HHHHHHHHHHHHHHHHcC
Confidence            12456677887777  79999999999999999999999999999999985     45    577899999999999999


Q ss_pred             CCCHHhhhhc
Q psy16780        183 CTSVGEIQRE  192 (202)
Q Consensus       183 ~~~i~el~~~  192 (202)
                      +++++|+++.
T Consensus       289 ~~~i~~~~g~  298 (301)
T PRK07259        289 IKSIEEIVGI  298 (301)
T ss_pred             CCCHHHHhCc
Confidence            9999999874

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.76  E-value=1.1e-17  Score=153.45  Aligned_cols=146  Identities=22%  Similarity=0.263  Sum_probs=118.2

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc----CCCCC--cc---chHHHHHHHHH
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG----RQLDY--VP---ASIEALPEIAK  114 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg----~~~~~--~~---~~~~~l~~i~~  114 (202)
                      +.|+....|+.|++||+.+ +.+|+++.+.+.++++.+.++|+|+|.+++|+|    ++...  +.   .++..+.++++
T Consensus       269 ~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~  348 (505)
T PLN02274        269 SQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA  348 (505)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH
Confidence            4677778899999999988 589999999999999999999999999987665    22211  22   24445666655


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------------
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-----------------  157 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-----------------  157 (202)
                      ..  ++|||++|||+++.|++|||++||++|++|+.|...                    +.+                 
T Consensus       349 ~~--~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~  426 (505)
T PLN02274        349 QH--GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTA  426 (505)
T ss_pred             hc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCc
Confidence            54  799999999999999999999999999999998731                    100                 


Q ss_pred             -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                           +|.       -.+.+++.+|..+|+..|.++|+.++.||+.+
T Consensus       427 ~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~  473 (505)
T PLN02274        427 KLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL  473 (505)
T ss_pred             ccccCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence                 111       12789999999999999999999999999866

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.76  E-value=8.8e-18  Score=153.79  Aligned_cols=148  Identities=24%  Similarity=0.330  Sum_probs=121.3

Q ss_pred             hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc---CC---CCCccchHHHHHHHHHHh
Q psy16780         44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG---RQ---LDYVPASIEALPEIAKAV  116 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg---~~---~~~~~~~~~~l~~i~~~~  116 (202)
                      ..+|+..+.++.|+++++.+ ++||+++.+.+.++++.+.++|+|+|.++.++|   +.   ...+.|++.++.++++..
T Consensus       261 ~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~  340 (495)
T PTZ00314        261 SSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYA  340 (495)
T ss_pred             cCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHH
Confidence            34678888899999999987 799999999999999999999999999965433   11   234667778877776654


Q ss_pred             C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh------c-----------
Q psy16780        117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH------S-----------  158 (202)
Q Consensus       117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~------~-----------  158 (202)
                      . .++|+|++|||+++.|++||+++||++||+|+.|...                    +.+      .           
T Consensus       341 ~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~  420 (495)
T PTZ00314        341 RERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENE  420 (495)
T ss_pred             hhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccc
Confidence            3 2699999999999999999999999999999988631                    100      0           


Q ss_pred             ------Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        159 ------GK-------SGVRKVLDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       159 ------G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                            |.       -.+.+++.++..+|+..|.++|+.+|+||+.
T Consensus       421 ~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~  466 (495)
T PTZ00314        421 TIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE  466 (495)
T ss_pred             ccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence                  10       2278999999999999999999999999987

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.76  E-value=1.4e-17  Score=152.35  Aligned_cols=147  Identities=25%  Similarity=0.359  Sum_probs=121.3

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-----CCC-CCccchHHHHHHHHHHhC-
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----RQL-DYVPASIEALPEIAKAVG-  117 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-----~~~-~~~~~~~~~l~~i~~~~~-  117 (202)
                      .+++....+.++++++.+ ++||+++.+.+.++++.+.++|+|+|.++.++|     +.. ..+.|+++++.++++..+ 
T Consensus       250 ~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~  329 (486)
T PRK05567        250 HGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKK  329 (486)
T ss_pred             CCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhcc
Confidence            455666788999999998 899999999999999999999999999865443     223 346788999988877653 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------------
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH--------------------  157 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~--------------------  157 (202)
                      .++|||++|||+++.|++||+++|||+||+|++|...                    +.+                    
T Consensus       330 ~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~  409 (486)
T PRK05567        330 YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAAD  409 (486)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhccccccccccccccc
Confidence            3699999999999999999999999999999987531                    000                    


Q ss_pred             ----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 ----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 ----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                          +|.       -.+.+++.++..+|+..|.++|+.+++||+.+
T Consensus       410 ~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~  455 (486)
T PRK05567        410 KLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK  455 (486)
T ss_pred             ccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence                010       13789999999999999999999999999855

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=99.76  E-value=1.1e-17  Score=145.92  Aligned_cols=149  Identities=25%  Similarity=0.338  Sum_probs=120.3

Q ss_pred             hccCccccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C---CCCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q---LDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~---~~~~~~~~~~l~~i~~~~~  117 (202)
                      ..++++...+.++++++..+ +||++..+.+.+.++.+.++|+|+|.++..+|.   .   ...+.|++..+.++.+.+.
T Consensus       115 ~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~  194 (325)
T cd00381         115 AHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR  194 (325)
T ss_pred             CCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh
Confidence            45666667889999999874 899988889999999999999999999654332   1   2345678888888776653


Q ss_pred             C-CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh---------------------------------------
Q psy16780        118 H-KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH---------------------------------------  157 (202)
Q Consensus       118 ~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~---------------------------------------  157 (202)
                      . ++|||++|||+++.|+.|++++||++||+||.|+....+                                       
T Consensus       195 ~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~  274 (325)
T cd00381         195 DYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKK  274 (325)
T ss_pred             hcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcccccccccccc
Confidence            2 699999999999999999999999999999998842100                                       


Q ss_pred             ---cC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        158 ---SG-------KSGVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       158 ---~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                         +|       .-.+.+++..+..+||..|.++|+.+++||++..
T Consensus       275 ~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~  320 (325)
T cd00381         275 LVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKA  320 (325)
T ss_pred             ccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcC
Confidence               01       1137889999999999999999999999999873

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.76  E-value=1.5e-17  Score=148.01  Aligned_cols=149  Identities=21%  Similarity=0.296  Sum_probs=119.8

Q ss_pred             hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC-----CCC-CccchHHHHHHHHHHh
Q psy16780         44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR-----QLD-YVPASIEALPEIAKAV  116 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~-----~~~-~~~~~~~~l~~i~~~~  116 (202)
                      .+.+++....+.++++|+.+ +.+|+++.+.|.+.++.+.++|+|+|.++..+|+     ..+ .+.|++..+.++++.+
T Consensus       173 ~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~  252 (404)
T PRK06843        173 SAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC  252 (404)
T ss_pred             CCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHH
Confidence            44567777889999999988 7899999999999999999999999998644332     222 2456777776665554


Q ss_pred             C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh------------------
Q psy16780        117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH------------------  157 (202)
Q Consensus       117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~------------------  157 (202)
                      . .++|||++|||+++.|++||+++||++||+|++|...                    +.+                  
T Consensus       253 ~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~  332 (404)
T PRK06843        253 KNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENN  332 (404)
T ss_pred             hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccc
Confidence            2 2699999999999999999999999999999998741                    000                  


Q ss_pred             -------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                             +|.       -.+.+++.++..+|+..|.++|+.+|.||+.+
T Consensus       333 ~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~  381 (404)
T PRK06843        333 EPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN  381 (404)
T ss_pred             cccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence                   010       11788999999999999999999999999864

>PLN02826 dihydroorotate dehydrogenase

Probab=99.76  E-value=3.4e-17  Score=146.50  Aligned_cols=138  Identities=22%  Similarity=0.269  Sum_probs=109.1

Q ss_pred             CccccHHHHHHHHHh---------cCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccC-cC----------CCCC
Q psy16780         48 DETINWSDVTWLKTI---------TKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHG-GR----------QLDY  101 (202)
Q Consensus        48 d~~~~~~~i~~i~~~---------~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~g-g~----------~~~~  101 (202)
                      +++...++++.+++.         .++||+||+.  .+.++    ++.+.++|+|+|+++|+. ++          +..+
T Consensus       237 ~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~G  316 (409)
T PLN02826        237 GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAG  316 (409)
T ss_pred             ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCC
Confidence            455556677777643         4689999996  34333    788899999999999852 11          0111


Q ss_pred             ---cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        102 ---VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       102 ---~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                         |+    ...+.+.++++.+++++|||++|||.|++|+++.+.+||++|+++|+|++    +|+    .++..++++|
T Consensus       317 GlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL  388 (409)
T PLN02826        317 GLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAEL  388 (409)
T ss_pred             CcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHH
Confidence               22    24567788888887789999999999999999999999999999999986    476    4778999999


Q ss_pred             HHHHHHhCCCCHHhhhhcc
Q psy16780        175 DQALALSGCTSVGEIQREM  193 (202)
Q Consensus       175 ~~~m~~~G~~~i~el~~~~  193 (202)
                      +.+|...|+++++|+++..
T Consensus       389 ~~~l~~~G~~si~e~iG~~  407 (409)
T PLN02826        389 AACLERDGFKSIQEAVGAD  407 (409)
T ss_pred             HHHHHHcCCCCHHHHhCcC
Confidence            9999999999999998753

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=99.75  E-value=9e-18  Score=149.03  Aligned_cols=183  Identities=15%  Similarity=0.134  Sum_probs=131.8

Q ss_pred             hhhhhhcccc--ccCCcceecccCCCccccc--------CCCCcchhHH-----Hh--------hhccCccccHHHHHHH
Q psy16780          3 IYWMKSSLVC--LVLSQYLLANFSGKLSQLS--------NTSDSSSLLA-----YI--------TSQLDETINWSDVTWL   59 (202)
Q Consensus         3 ~~~~~~~~~~--~~p~~~~~~n~~~~~~~~~--------~~~~~~~~~~-----~~--------~~~~d~~~~~~~i~~i   59 (202)
                      .+|+....++  ..|+.++++++......++        +...++++..     +.        +-..+|+.+.++++++
T Consensus        98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V  177 (385)
T PLN02495         98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI  177 (385)
T ss_pred             HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH
Confidence            4677765555  3688899999954222222        1111233321     11        1235778888899999


Q ss_pred             HHhcCCCEEEEeccCH----HHHHHHHHcCCcEEEeeccCc--CCC----------------CCc---c----chHHHHH
Q psy16780         60 KTITKLPIVLKGILTA----EDAKIGVEMGASAIMVSNHGG--RQL----------------DYV---P----ASIEALP  110 (202)
Q Consensus        60 ~~~~~~Pv~vK~~~~~----~~a~~l~~aG~d~I~v~~~gg--~~~----------------~~~---~----~~~~~l~  110 (202)
                      ++.+++||++|+..+.    +.++.+.++|+|+|++.|+-.  ...                .++   +    .....+.
T Consensus       178 k~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~  257 (385)
T PLN02495        178 NAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVM  257 (385)
T ss_pred             HHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHH
Confidence            9999999999998543    557889999999999998632  111                011   1    1222344


Q ss_pred             HHHHHhC----CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCH
Q psy16780        111 EIAKAVG----HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSV  186 (202)
Q Consensus       111 ~i~~~~~----~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i  186 (202)
                      ++++.+.    .++|||++|||.+++|+++.+.+||++|++++++++    +|+    .+++.+.++|+.+|...|++++
T Consensus       258 ~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~----~Gp----~vi~~i~~~L~~~m~~~G~~si  329 (385)
T PLN02495        258 AIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM----HGY----PLVKNLCAELQDFMKKHNFSSI  329 (385)
T ss_pred             HHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee----cCc----HHHHHHHHHHHHHHHHcCCCCH
Confidence            4555542    259999999999999999999999999999999885    577    5778999999999999999999


Q ss_pred             Hhhhhcc
Q psy16780        187 GEIQREM  193 (202)
Q Consensus       187 ~el~~~~  193 (202)
                      +|+++..
T Consensus       330 ~e~~G~~  336 (385)
T PLN02495        330 EDFRGAS  336 (385)
T ss_pred             HHHhCcC
Confidence            9999874

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.74  E-value=3.9e-17  Score=148.13  Aligned_cols=147  Identities=26%  Similarity=0.361  Sum_probs=120.3

Q ss_pred             hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-C----CC-CCccchHHHHHHHHHHh
Q psy16780         44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-R----QL-DYVPASIEALPEIAKAV  116 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-~----~~-~~~~~~~~~l~~i~~~~  116 (202)
                      ..+++....++.|+++++.+ ++||+++.+.+.+.++.+.++|+|+|.++.++| +    .. ..+.|++.++.++++..
T Consensus       244 ~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~  323 (450)
T TIGR01302       244 SSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYA  323 (450)
T ss_pred             CCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHH
Confidence            34567778889999999995 899999999999999999999999999975544 1    11 34667888888876654


Q ss_pred             C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh------------------
Q psy16780        117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH------------------  157 (202)
Q Consensus       117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~------------------  157 (202)
                      . .++|||++|||+++.|++|||++||++||+|+.|...                    +.+                  
T Consensus       324 ~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~  403 (450)
T TIGR01302       324 AQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENK  403 (450)
T ss_pred             hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccc
Confidence            2 3799999999999999999999999999999988731                    100                  


Q ss_pred             ------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780        158 ------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQ  190 (202)
Q Consensus       158 ------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~  190 (202)
                            +|.       -.+.+++.++..+|+..|.++|+.+++||+
T Consensus       404 ~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~  449 (450)
T TIGR01302       404 TKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR  449 (450)
T ss_pred             cccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence                  111       127889999999999999999999999987

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=99.74  E-value=5.2e-17  Score=143.46  Aligned_cols=144  Identities=24%  Similarity=0.345  Sum_probs=109.5

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC----CCCccchHHHHHHHHHHh-------C-CC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ----LDYVPASIEALPEIAKAV-------G-HK  119 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~----~~~~~~~~~~l~~i~~~~-------~-~~  119 (202)
                      .|+.+.++++..++||+++.+.+.++++.+.++|+|+|.++.+++..    +..+.|+...+.+++++.       . ..
T Consensus       176 ~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~  255 (369)
T TIGR01304       176 EPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRY  255 (369)
T ss_pred             CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46678888888899999988899999999999999999844333211    112356666666654332       2 14


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc--------------------------Ch-HHHHHHHH----
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS--------------------------GK-SGVRKVLD----  168 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~--------------------------G~-~~v~~~i~----  168 (202)
                      +|||++|||+++.|++|++++|||+|++|++|+....+.                          |+ +.+++++.    
T Consensus       256 vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~  335 (369)
T TIGR01304       256 VHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPST  335 (369)
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHHeeCCCC
Confidence            999999999999999999999999999999999743211                          10 12444433    


Q ss_pred             ------HHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        169 ------ILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       169 ------~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                            .+...|+..|..+|+++++||++..++
T Consensus       336 ~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~  368 (369)
T TIGR01304       336 LPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT  368 (369)
T ss_pred             CCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence                  578899999999999999999998664

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=99.74  E-value=7.8e-17  Score=141.97  Aligned_cols=133  Identities=29%  Similarity=0.352  Sum_probs=97.2

Q ss_pred             cHHHHHHHHHhc-CCCEEEEecc--CHHHHHH-HHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh---
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKGIL--TAEDAKI-GVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV---  116 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~~~--~~~~a~~-l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~---  116 (202)
                      ..+.|.++|+.. ++||.+|++.  ..+++.. +.++|+|+|+++|+ |||..       +.+.|....+.++.+.+   
T Consensus       190 l~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~  269 (368)
T PF01645_consen  190 LAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKN  269 (368)
T ss_dssp             HHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHc
Confidence            456889999988 8999999983  3454444 88999999999996 45542       34667777787776654   


Q ss_pred             --CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc-----------------------------ChHHHHH
Q psy16780        117 --GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS-----------------------------GKSGVRK  165 (202)
Q Consensus       117 --~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~  165 (202)
                        ++++.++++||++++.|++|++++|||+|.+||+++.++.|.                             +.+.|.+
T Consensus       270 glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n  349 (368)
T PF01645_consen  270 GLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVAN  349 (368)
T ss_dssp             T-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHH
T ss_pred             CCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHH
Confidence              457999999999999999999999999999999999886542                             2577999


Q ss_pred             HHHHHHHHHHHHHHHhCCC
Q psy16780        166 VLDILINEFDQALALSGCT  184 (202)
Q Consensus       166 ~i~~l~~~L~~~m~~~G~~  184 (202)
                      +++.+.+|++.+|..+|.+
T Consensus       350 ~~~~~~~el~~~~~a~G~~  368 (368)
T PF01645_consen  350 FLKACAEELREILAALGKR  368 (368)
T ss_dssp             HHHHHHHHHHHHHHHHT-S
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999964

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=99.72  E-value=5.2e-17  Score=146.09  Aligned_cols=139  Identities=21%  Similarity=0.246  Sum_probs=113.3

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC-c-----------------C---CCCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG-G-----------------R---QLDY  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g-g-----------------~---~~~~  101 (202)
                      .||+...++++++++.+++||+||+..+    .+.++.+.++|+|+|++.|+- +                 +   +..+
T Consensus       151 ~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~S  230 (420)
T PRK08318        151 QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYC  230 (420)
T ss_pred             CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCccccc
Confidence            5788889999999999999999999843    366788999999999977641 1                 0   0112


Q ss_pred             ccc----hHHHHHHHHHHhC-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        102 VPA----SIEALPEIAKAVG-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       102 ~~~----~~~~l~~i~~~~~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      |++    .++.+.++++.++ .++|||++|||.|++|+.+++.+|||+||+||++++    +|+    .++..+.++|+.
T Consensus       231 G~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp----~ii~~I~~~L~~  302 (420)
T PRK08318        231 GPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGF----RIVEDMISGLSH  302 (420)
T ss_pred             chhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCc----hhHHHHHHHHHH
Confidence            333    4667777777653 379999999999999999999999999999999885    466    467789999999


Q ss_pred             HHHHhCCCCHHhhhhcc
Q psy16780        177 ALALSGCTSVGEIQREM  193 (202)
Q Consensus       177 ~m~~~G~~~i~el~~~~  193 (202)
                      +|...|+.+++++.+..
T Consensus       303 ~l~~~g~~si~e~iG~~  319 (420)
T PRK08318        303 YMDEKGFASLEDMVGLA  319 (420)
T ss_pred             HHHHcCcchHHHHhccc
Confidence            99999999999998753

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.69  E-value=3e-16  Score=137.90  Aligned_cols=129  Identities=16%  Similarity=0.218  Sum_probs=102.5

Q ss_pred             ccCccccHHHHHHHHHhcC-----CCEEEEecc--C----HHHHHHHHHcCCcEEEeeccCc-------------CCCCC
Q psy16780         46 QLDETINWSDVTWLKTITK-----LPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHGG-------------RQLDY  101 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~-----~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~gg-------------~~~~~  101 (202)
                      ..+++...++++++|+.++     +||++|+..  +    .+.++.+.++|+|+|+++|+..             ++.-+
T Consensus       188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S  267 (344)
T PRK05286        188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS  267 (344)
T ss_pred             ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc
Confidence            4466667889999999887     999999983  2    3557888999999999998521             00111


Q ss_pred             cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q psy16780        102 VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA  177 (202)
Q Consensus       102 ~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~  177 (202)
                      ++    ..++.+.++++.+++++|||++|||+|++|+.+++.+|||+|++||+++.    +|+    .+++.++++|+.+
T Consensus       268 G~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~----~gP----~~~~~i~~~L~~~  339 (344)
T PRK05286        268 GRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY----EGP----GLVKEIVRGLARL  339 (344)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH----hCc----hHHHHHHHHHHHH
Confidence            22    24556777777776679999999999999999999999999999999986    366    5778899999999


Q ss_pred             HHHhC
Q psy16780        178 LALSG  182 (202)
Q Consensus       178 m~~~G  182 (202)
                      |...|
T Consensus       340 l~~~g  344 (344)
T PRK05286        340 LRRDG  344 (344)
T ss_pred             HHhcC
Confidence            98765

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=99.69  E-value=5e-16  Score=134.78  Aligned_cols=137  Identities=18%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccC---HHHHHHHH---HcCCcEEEeeccC--c--------CC-C-----CC---c
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILT---AEDAKIGV---EMGASAIMVSNHG--G--------RQ-L-----DY---V  102 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~---~~~a~~l~---~aG~d~I~v~~~g--g--------~~-~-----~~---~  102 (202)
                      |++...++++++++.+++||++|+..+   .+.++.+.   +.|+++|...++-  +        +. .     .+   +
T Consensus       141 d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG  220 (310)
T PRK02506        141 DFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGG  220 (310)
T ss_pred             CHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCc
Confidence            677788899999999999999999843   33344433   5567777665531  1        10 0     11   1


Q ss_pred             c----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780        103 P----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL  178 (202)
Q Consensus       103 ~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m  178 (202)
                      +    .....+.++++.+..++|||++|||.|++|+++.+.+||++|++++++++    +|+    .++..+.++|+.+|
T Consensus       221 ~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~l  292 (310)
T PRK02506        221 DYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGP----AVFERLTKELKAIM  292 (310)
T ss_pred             hhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hCh----HHHHHHHHHHHHHH
Confidence            1    23445667777776689999999999999999999999999999999986    366    57789999999999


Q ss_pred             HHhCCCCHHhhhhc
Q psy16780        179 ALSGCTSVGEIQRE  192 (202)
Q Consensus       179 ~~~G~~~i~el~~~  192 (202)
                      ...|+++++|+++.
T Consensus       293 ~~~g~~si~e~~G~  306 (310)
T PRK02506        293 AEKGYQSLEDFRGK  306 (310)
T ss_pred             HHhCCCCHHHHhCh
Confidence            99999999999984

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=99.68  E-value=2.2e-16  Score=136.21  Aligned_cols=119  Identities=23%  Similarity=0.251  Sum_probs=94.1

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccCcC---------------------CCCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHGGR---------------------QLDY  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg~---------------------~~~~  101 (202)
                      .||+...++++++++.+++||+||++.+    .+.++.+.++|+|+|+++|+...                     +..+
T Consensus       151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s  230 (299)
T cd02940         151 QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS  230 (299)
T ss_pred             cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc
Confidence            4788889999999999999999999854    36788899999999998875211                     1112


Q ss_pred             cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHH
Q psy16780        102 VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       102 ~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      ++    .+++.+.++++.+.+++|||++|||++++|+.+++.+|||+||+||+++.    +|+.    ++..+.++
T Consensus       231 G~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~----~g~~----~~~~i~~~  298 (299)
T cd02940         231 GPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN----QGFT----IVDDMCTG  298 (299)
T ss_pred             CCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc----cCCc----HHHHHhhh
Confidence            22    24778888888876679999999999999999999999999999999885    4663    34445444

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.67  E-value=1e-15  Score=139.57  Aligned_cols=148  Identities=26%  Similarity=0.339  Sum_probs=120.3

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----CC--CCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----QL--DYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~~--~~~~~~~~~l~~i~~~~~  117 (202)
                      +.++.....+.|++||+.+ +++|+.+.+.|.+.++.+.++|+|+|.|+-++|.    +.  ..+.|.+.++.++++...
T Consensus       248 a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~  327 (479)
T PRK07807        248 AHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAR  327 (479)
T ss_pred             cCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHH
Confidence            3556666788999999998 7999999999999999999999999998765442    11  124678888888877543


Q ss_pred             C-CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH---------------------------hh-------------
Q psy16780        118 H-KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG---------------------------LA-------------  156 (202)
Q Consensus       118 ~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~---------------------------~~-------------  156 (202)
                      . .+|||++|||+++.|+.|++++||++||+|+.|.-.                           +.             
T Consensus       328 ~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~  407 (479)
T PRK07807        328 ELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRAR  407 (479)
T ss_pred             hcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcc
Confidence            2 799999999999999999999999999999988521                           10             


Q ss_pred             ----hcCh-----------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        157 ----HSGK-----------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       157 ----~~G~-----------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                          .+|.           ..+.++++++..+||..|.++|+.+|+||+.+
T Consensus       408 ~~~~~eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~  458 (479)
T PRK07807        408 KALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER  458 (479)
T ss_pred             cCCCCCCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence                0121           11778899999999999999999999999877

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=99.67  E-value=1.8e-15  Score=136.35  Aligned_cols=139  Identities=27%  Similarity=0.271  Sum_probs=112.8

Q ss_pred             HHHHHHHHhc-CCCEEEEecc--CHHHHHH-HHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh-----
Q psy16780         54 SDVTWLKTIT-KLPIVLKGIL--TAEDAKI-GVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV-----  116 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~--~~~~a~~-l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~-----  116 (202)
                      +.|.++|+.. ..||.||++.  ..+++.. ..+++||.|+|+|+ |||..       +.|.|....|.++.+.+     
T Consensus       292 qlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~gl  371 (485)
T COG0069         292 QLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGL  371 (485)
T ss_pred             HHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCC
Confidence            3677777765 4679999983  3555555 88999999999997 56643       23555555677766543     


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc-----------------------------ChHHHHHHH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS-----------------------------GKSGVRKVL  167 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~i  167 (202)
                      +.++.|+++||++|+.|++|++++|||.|.+|++.+.++.|.                             .++.|.+++
T Consensus       372 Rd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~  451 (485)
T COG0069         372 RDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYF  451 (485)
T ss_pred             cceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHH
Confidence            567999999999999999999999999999999988776542                             257799999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        168 DILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       168 ~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      ..+.+|++.+|+.+|.+++++|+++
T Consensus       452 ~~~a~e~rella~lG~~~l~el~g~  476 (485)
T COG0069         452 TFVAEELRELLAALGKRSLSELIGR  476 (485)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHhcc
Confidence            9999999999999999999999976

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=99.64  E-value=2.7e-15  Score=129.24  Aligned_cols=123  Identities=21%  Similarity=0.175  Sum_probs=93.5

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc--C----HHHHHHHHHc--CCcEEEeeccCc---------CC--C-----CCcc
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL--T----AEDAKIGVEM--GASAIMVSNHGG---------RQ--L-----DYVP  103 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~--~----~~~a~~l~~a--G~d~I~v~~~gg---------~~--~-----~~~~  103 (202)
                      ||+...++++++++.+++||+||++.  +    .+.++.+.++  |+|+|++.|+-+         +.  +     .++.
T Consensus       141 ~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~  220 (294)
T cd04741         141 DFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGL  220 (294)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCc
Confidence            78888899999999999999999984  2    2335556677  999999876531         11  0     1121


Q ss_pred             c-------hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        104 A-------SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       104 ~-------~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      +       .+..+.++++.++.++|||++|||.|++|+.+++.+|||+||++|++++    +|+    .+++.+.++|+.
T Consensus       221 SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~  292 (294)
T cd04741         221 AGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK----EGP----KVFARIEKELED  292 (294)
T ss_pred             CchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh----cCc----hHHHHHHHHHHh
Confidence            1       2344566667775569999999999999999999999999999999985    366    466788888887


Q ss_pred             HH
Q psy16780        177 AL  178 (202)
Q Consensus       177 ~m  178 (202)
                      +|
T Consensus       293 ~~  294 (294)
T cd04741         293 IW  294 (294)
T ss_pred             hC
Confidence            64

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=6.5e-15  Score=128.46  Aligned_cols=146  Identities=24%  Similarity=0.293  Sum_probs=118.7

Q ss_pred             ccCccccHHHHHHHHHhcC-CCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITK-LPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      ..+|+...++|+++++.++ +||.||.+.        ..+.++.+.++|++.++|+++...+...++.+++.+.++++.+
T Consensus       117 l~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~  196 (323)
T COG0042         117 LKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAV  196 (323)
T ss_pred             cCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhC
Confidence            4589999999999999994 999999872        2357889999999999997765445556678999999999988


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHH-----HHHHh---hhcCh---HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRP-----ALWGL---AHSGK---SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~-----~l~~~---~~~G~---~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      +. +|||++|+|.|.+|+.++++ .|+|+||+||.     +++..   ...|.   ....+..+.+..+++.+....|..
T Consensus       197 ~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~  275 (323)
T COG0042         197 PS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKK  275 (323)
T ss_pred             CC-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            43 99999999999999999999 58999999995     44331   12333   456778888999999999999866


Q ss_pred             CHHhhhhc
Q psy16780        185 SVGEIQRE  192 (202)
Q Consensus       185 ~i~el~~~  192 (202)
                      .+..+++.
T Consensus       276 ~~~~~r~h  283 (323)
T COG0042         276 GLRRLRKH  283 (323)
T ss_pred             HHHHHHHH
Confidence            77777766

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=99.61  E-value=1.7e-14  Score=125.81  Aligned_cols=144  Identities=17%  Similarity=0.167  Sum_probs=112.2

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .||++..++++++++.+++||.+|.+.        ..+.++.+.++|+|.|+++++...+...+..+++.+.++++.+  
T Consensus       116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--  193 (321)
T PRK10415        116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--  193 (321)
T ss_pred             cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--
Confidence            478999999999999999999999862        2366788999999999997654334455667888999998877  


Q ss_pred             CcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH-----Hhh----hcC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        119 KVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW-----GLA----HSG----KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~-----~~~----~~G----~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      ++|||++|||+|++|+.+++. .|||+||+||+++.     ...    ..|    +....+.++.+.++++.+....|..
T Consensus       194 ~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (321)
T PRK10415        194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPA  273 (321)
T ss_pred             CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChH
Confidence            799999999999999999997 69999999997653     211    112    2335567788888888888887753


Q ss_pred             -CHHhhhhc
Q psy16780        185 -SVGEIQRE  192 (202)
Q Consensus       185 -~i~el~~~  192 (202)
                       .+.++|+.
T Consensus       274 ~~~~~~rk~  282 (321)
T PRK10415        274 KGYRIARKH  282 (321)
T ss_pred             HHHHHHHHH
Confidence             45666655

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=99.56  E-value=2.4e-14  Score=125.03  Aligned_cols=120  Identities=21%  Similarity=0.254  Sum_probs=91.2

Q ss_pred             ccCccccHHHHHHHHHhcC-----CCEEEEecc--C----HHHHHHHHHcCCcEEEeeccCc-------------CCCCC
Q psy16780         46 QLDETINWSDVTWLKTITK-----LPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHGG-------------RQLDY  101 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~-----~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~gg-------------~~~~~  101 (202)
                      ..|++...++++++++.++     +||++|+..  +    .+.++.+.++|+|+|+++|+..             ++..+
T Consensus       179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s  258 (327)
T cd04738         179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS  258 (327)
T ss_pred             ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence            3466677789999999886     999999973  2    3457888999999999988421             00011


Q ss_pred             cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHH
Q psy16780        102 VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       102 ~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      ++    ..++.+..+++.++.++|||++|||+|++|+.+++.+|||+|++||+++.    +|+    .++..++++
T Consensus       259 G~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~----~gP----~~~~~i~~~  326 (327)
T cd04738         259 GAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY----EGP----GLVKRIKRE  326 (327)
T ss_pred             ChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh----hCc----HHHHHHHhc
Confidence            22    23566777888776679999999999999999999999999999999986    466    344555554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=99.56  E-value=8.9e-14  Score=120.80  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=97.8

Q ss_pred             ccCccccHHHHHHHHHhc--CCCEEEEecc-------CHHHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHH
Q psy16780         46 QLDETINWSDVTWLKTIT--KLPIVLKGIL-------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKA  115 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~--~~Pv~vK~~~-------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~  115 (202)
                      ..+|++..++++++++.+  ++||.||.+.       ..+.++.+.++|+|.|+|+++...+...+++ +++.+.++++.
T Consensus       113 l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~  192 (312)
T PRK10550        113 LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR  192 (312)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh
Confidence            358888999999999988  4999999862       2356788999999999997654444445554 78889999888


Q ss_pred             hCCCcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH-----HhhhcC--hHHHHHHHHHHHHHHHH
Q psy16780        116 VGHKVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW-----GLAHSG--KSGVRKVLDILINEFDQ  176 (202)
Q Consensus       116 ~~~~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~-----~~~~~G--~~~v~~~i~~l~~~L~~  176 (202)
                      +  ++|||++|||.|++|+.++++ .|||+||+||+++.     .....|  .....+.++.+.++++.
T Consensus       193 ~--~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~  259 (312)
T PRK10550        193 L--TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRL  259 (312)
T ss_pred             c--CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Confidence            7  799999999999999999996 68999999996553     221222  12344555666666643

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=99.55  E-value=8.4e-14  Score=138.25  Aligned_cols=139  Identities=24%  Similarity=0.224  Sum_probs=109.8

Q ss_pred             HHHHHHHHhc-CCCEEEEeccC--H-HHHHHHHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh-----
Q psy16780         54 SDVTWLKTIT-KLPIVLKGILT--A-EDAKIGVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV-----  116 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~~--~-~~a~~l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~-----  116 (202)
                      +.|.++|+.. +.||.||++..  . ..+..+.++|+|.|+|+|+ |||..       +.+.|....|.++.+.+     
T Consensus       985 qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~gl 1064 (1485)
T PRK11750        985 QLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGL 1064 (1485)
T ss_pred             HHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCC
Confidence            3567777766 67999999832  2 3344677899999999997 44532       23445444576665543     


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc----------------------------ChHHHHHHHH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS----------------------------GKSGVRKVLD  168 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~----------------------------G~~~v~~~i~  168 (202)
                      ++++.++++||++|+.|++|++++|||.|.+|++++.++.|.                            .++.|.+++.
T Consensus      1065 R~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~ 1144 (1485)
T PRK11750       1065 RHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFE 1144 (1485)
T ss_pred             CcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHH
Confidence            567999999999999999999999999999999999876542                            1467999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        169 ILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       169 ~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      .+.+|++.+|..+|.++++||.+.
T Consensus      1145 ~~~~el~~~la~lG~~s~~elvGr 1168 (1485)
T PRK11750       1145 FIAEETREWMAQLGVRSLEDLIGR 1168 (1485)
T ss_pred             HHHHHHHHHHHHhCCCCHHHhcCc
Confidence            999999999999999999999543

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=99.55  E-value=1.4e-14  Score=124.59  Aligned_cols=123  Identities=23%  Similarity=0.278  Sum_probs=88.7

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc---CH---HHHHHHHHcCCcEEEeeccCcC----------CC----C---Ccc-
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL---TA---EDAKIGVEMGASAIMVSNHGGR----------QL----D---YVP-  103 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~---~~---~~a~~l~~aG~d~I~v~~~gg~----------~~----~---~~~-  103 (202)
                      +++...++++.+++..++||++|+..   +.   +.+..+.+.|+++|++.|+-..          ..    .   +|+ 
T Consensus       146 ~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~  225 (295)
T PF01180_consen  146 DPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPA  225 (295)
T ss_dssp             HHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGG
T ss_pred             CHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchh
Confidence            34455668888888889999999984   22   3355566889999998774210          01    1   122 


Q ss_pred             ---chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780        104 ---ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL  178 (202)
Q Consensus       104 ---~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m  178 (202)
                         .....+.++++.++.++|||++|||+|++|+.+++.+||++|+++|.+++    .|+    .+++.+.++|+.+|
T Consensus       226 i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~----~Gp----~~~~~i~~~L~~~l  295 (295)
T PF01180_consen  226 IRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY----RGP----GVIRRINRELEEWL  295 (295)
T ss_dssp             GHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH----HGT----THHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh----cCc----HHHHHHHHHHHhhC
Confidence               24456777888886679999999999999999999999999999999986    366    46678888888887

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=99.55  E-value=1.6e-13  Score=119.42  Aligned_cols=144  Identities=19%  Similarity=0.247  Sum_probs=107.8

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .+|++..++++++++.+++||++|.+.        ..+.++.+.++|+|.|+++++...+...+++.++.+.++++.+  
T Consensus       114 ~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--  191 (319)
T TIGR00737       114 RDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--  191 (319)
T ss_pred             CCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--
Confidence            478889999999999999999999852        2466788999999999997643223333456788888888877  


Q ss_pred             CcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHHH------hh---hcC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        119 KVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALWG------LA---HSG----KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~~------~~---~~G----~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      ++|||++|||++++|+.+++. .|||+||+||+++..      +.   ..|    +....+.++.+.++++...+..|..
T Consensus       192 ~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  271 (319)
T TIGR00737       192 RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGES  271 (319)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcc
Confidence            799999999999999999995 789999999987742      10   112    1234556677777777777777643


Q ss_pred             -CHHhhhhc
Q psy16780        185 -SVGEIQRE  192 (202)
Q Consensus       185 -~i~el~~~  192 (202)
                       .+..+++.
T Consensus       272 ~~~~~~r~~  280 (319)
T TIGR00737       272 KGLRIARKH  280 (319)
T ss_pred             hHHHHHHHH
Confidence             34555443

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=99.54  E-value=8.2e-14  Score=119.25  Aligned_cols=106  Identities=23%  Similarity=0.291  Sum_probs=84.4

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEec--cC----HHHHHHHHHcCCcEEEeeccC-cCC------------CC---Ccc--
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGI--LT----AEDAKIGVEMGASAIMVSNHG-GRQ------------LD---YVP--  103 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~--~~----~~~a~~l~~aG~d~I~v~~~g-g~~------------~~---~~~--  103 (202)
                      ++++..++++++++.+++||++|+.  .+    .+.++.+.++|+|+|+++|+. ++.            ..   ++.  
T Consensus       146 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~  225 (289)
T cd02810         146 DPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPI  225 (289)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHH
Confidence            5667788999999999999999987  33    466788999999999998752 110            01   111  


Q ss_pred             --chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        104 --ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       104 --~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                        ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||+++.
T Consensus       226 ~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~  277 (289)
T cd02810         226 RPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW  277 (289)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence              23556777777765479999999999999999999999999999999986

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=99.53  E-value=8.5e-14  Score=115.99  Aligned_cols=146  Identities=16%  Similarity=0.010  Sum_probs=103.9

Q ss_pred             hhhhhhccccccCCcceecccCCCccccc-----------CCCCcc--hhHHHhh-------hccCccccHHHHHHHHHh
Q psy16780          3 IYWMKSSLVCLVLSQYLLANFSGKLSQLS-----------NTSDSS--SLLAYIT-------SQLDETINWSDVTWLKTI   62 (202)
Q Consensus         3 ~~~~~~~~~~~~p~~~~~~n~~~~~~~~~-----------~~~~~~--~~~~~~~-------~~~d~~~~~~~i~~i~~~   62 (202)
                      ..|+..++...--+.+++.|+......+.           +.++-|  =.|..+.       -..||+...++++.+++ 
T Consensus        54 ~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-  132 (231)
T TIGR00736        54 NSYIIEQIKKAESRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-  132 (231)
T ss_pred             HHHHHHHHHHHhhcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-
Confidence            46888877664444567788776421111           111111  0111111       13388889999999994 


Q ss_pred             cCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH
Q psy16780         63 TKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK  136 (202)
Q Consensus        63 ~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k  136 (202)
                      .++||+||++.      +.+.++.+.++|+|+|+|+..  +.. .+..+++.++++++.++ .+|||++|||+|.+|+.+
T Consensus       133 ~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~--~~g-~~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e  208 (231)
T TIGR00736       133 LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAM--YPG-KPYADMDLLKILSEEFN-DKIIIGNNSIDDIESAKE  208 (231)
T ss_pred             CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeC--CCC-CchhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHH
Confidence            58999999984      247789999999999999632  110 12257888999988772 399999999999999999


Q ss_pred             HHHhCCCEEEEcHHHHH
Q psy16780        137 ALALGAKMVFVGRPALW  153 (202)
Q Consensus       137 al~~GAd~V~ig~~~l~  153 (202)
                      ++..|||+||+||+.+.
T Consensus       209 ~l~~GAd~VmvgR~~l~  225 (231)
T TIGR00736       209 MLKAGADFVSVARAILK  225 (231)
T ss_pred             HHHhCCCeEEEcHhhcc
Confidence            99999999999998875

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=99.52  E-value=7.5e-14  Score=122.39  Aligned_cols=120  Identities=15%  Similarity=0.166  Sum_probs=89.5

Q ss_pred             ccCccccHHHHHHHHHhcC-------CCEEEEeccC------HHHHHHHHHcCCcEEEeeccCc-------------CCC
Q psy16780         46 QLDETINWSDVTWLKTITK-------LPIVLKGILT------AEDAKIGVEMGASAIMVSNHGG-------------RQL   99 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~-------~Pv~vK~~~~------~~~a~~l~~aG~d~I~v~~~gg-------------~~~   99 (202)
                      ..+++...++++++++.++       +||++|+..+      .+.++.+.++|+|+|++.|+--             ...
T Consensus       185 ~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GG  264 (335)
T TIGR01036       185 LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGG  264 (335)
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCc
Confidence            3466777889999998876       9999999842      3557888999999999988521             000


Q ss_pred             CCcc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHH
Q psy16780        100 DYVP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       100 ~~~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      -+|+    .....+.++++.+++++|||++|||.+++|+.+++.+||++|++||++++    +|+.    +++.+.++
T Consensus       265 lSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~----~Gp~----~~~~i~~~  334 (335)
T TIGR01036       265 LSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY----WGPP----LVKEIVKE  334 (335)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH----hCch----HHHHHHhh
Confidence            1122    13345566666666679999999999999999999999999999999986    4663    44455544

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=99.50  E-value=9.7e-14  Score=120.43  Aligned_cols=144  Identities=26%  Similarity=0.325  Sum_probs=102.0

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .||+...++++.+++.+++||.+|.+.        +.+.++.+.++|+++|+|+++...+...++++|+.+.++++.+  
T Consensus       105 ~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--  182 (309)
T PF01207_consen  105 KDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--  182 (309)
T ss_dssp             C-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---
T ss_pred             cChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--
Confidence            488889999999999999999999872        2566899999999999998876666677788999999999888  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHH-----HHHHh---hhcC----hHHHHHHHHHHHHHHHHHHHHhC-CC
Q psy16780        119 KVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRP-----ALWGL---AHSG----KSGVRKVLDILINEFDQALALSG-CT  184 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~-----~l~~~---~~~G----~~~v~~~i~~l~~~L~~~m~~~G-~~  184 (202)
                      ++|||++|||.|.+|+.+.+.. |+|+||+||.     +++..   ...|    ...+.+.++.+.++++.+....| ..
T Consensus       183 ~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (309)
T PF01207_consen  183 PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEK  262 (309)
T ss_dssp             TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCc
Confidence            6999999999999999999984 9999999995     44431   1111    11145667777888887777775 34


Q ss_pred             CHHhhhhc
Q psy16780        185 SVGEIQRE  192 (202)
Q Consensus       185 ~i~el~~~  192 (202)
                      .+..+++.
T Consensus       263 ~~~~~~k~  270 (309)
T PF01207_consen  263 ALRQMRKH  270 (309)
T ss_dssp             HHHHHHTT
T ss_pred             hHHHHHHH
Confidence            45555554

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=99.49  E-value=7.8e-13  Score=115.20  Aligned_cols=142  Identities=15%  Similarity=0.210  Sum_probs=100.2

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--C--------HHHHHHHHHcCCcEEEeeccCc-CCCC-------CccchHHH
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--T--------AEDAKIGVEMGASAIMVSNHGG-RQLD-------YVPASIEA  108 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--~--------~~~a~~l~~aG~d~I~v~~~gg-~~~~-------~~~~~~~~  108 (202)
                      .+|++..++++.+++.+++||.||++.  +        .+.++.+.++|++.|+|+++.. .+..       ..+..++.
T Consensus       106 ~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~  185 (318)
T TIGR00742       106 GNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYER  185 (318)
T ss_pred             cCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHH
Confidence            488889999999999999999999873  1        2447888999999999976431 1111       12236777


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH-----Hhh----hcC---hHHHHHHHHHHHHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW-----GLA----HSG---KSGVRKVLDILINEFDQ  176 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~-----~~~----~~G---~~~v~~~i~~l~~~L~~  176 (202)
                      +.++++.+. ++|||++|||+|.+|+.+++. |||+|||||+++.     ...    .+|   .....+.++.+.++++.
T Consensus       186 i~~vk~~~~-~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~  263 (318)
T TIGR00742       186 VYQLKKDFP-HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEE  263 (318)
T ss_pred             HHHHHHhCC-CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence            778777653 699999999999999999996 9999999996553     211    112   12344566666677766


Q ss_pred             HHHHhCCCCHHhhhhc
Q psy16780        177 ALALSGCTSVGEIQRE  192 (202)
Q Consensus       177 ~m~~~G~~~i~el~~~  192 (202)
                      ....  ...+.++++.
T Consensus       264 ~~~~--~~~~~~~rk~  277 (318)
T TIGR00742       264 YLSQ--GLSLNHITRH  277 (318)
T ss_pred             HHHc--cchHHHHHHH
Confidence            4333  2355566555

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>KOG2550|consensus

Probab=99.48  E-value=6.8e-14  Score=122.90  Aligned_cols=150  Identities=25%  Similarity=0.315  Sum_probs=117.9

Q ss_pred             hhhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----C--CCCccchHHHHHHHHHH
Q psy16780         43 ITSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----Q--LDYVPASIEALPEIAKA  115 (202)
Q Consensus        43 ~~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~  115 (202)
                      -.++|+..+..+.|++||+.+ ..+|+...+.+.+.++.|+++|||++.|+-..|.    +  ...+.|...++.++++.
T Consensus       270 DSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~  349 (503)
T KOG2550|consen  270 DSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEF  349 (503)
T ss_pred             ecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHH
Confidence            466899999999999999998 5778888889999999999999999999765552    2  23455555555544433


Q ss_pred             hC-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------H------hh------------
Q psy16780        116 VG-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW--------------------G------LA------------  156 (202)
Q Consensus       116 ~~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~--------------------~------~~------------  156 (202)
                      .. -.+|+|++|||++..+++||+.+||+.||+|+.+..                    +      +.            
T Consensus       350 A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~d  429 (503)
T KOG2550|consen  350 ANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVD  429 (503)
T ss_pred             HHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccc
Confidence            21 279999999999999999999999999999985431                    0      10            


Q ss_pred             ----hcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        157 ----HSG-------KSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       157 ----~~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                          .+|       .-++..++..+..+++..++..|++++++++..
T Consensus       430 kvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~  476 (503)
T KOG2550|consen  430 KVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM  476 (503)
T ss_pred             eEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence                001       123778999999999999999999999999865

>KOG1436|consensus

Probab=99.43  E-value=1.7e-12  Score=111.04  Aligned_cols=121  Identities=22%  Similarity=0.318  Sum_probs=97.2

Q ss_pred             CCCEEEEeccC-----H-HHHHHHHHcCCcEEEeeccCc-C-------------C-CCCc---cchHHHHHHHHHHhCCC
Q psy16780         64 KLPIVLKGILT-----A-EDAKIGVEMGASAIMVSNHGG-R-------------Q-LDYV---PASIEALPEIAKAVGHK  119 (202)
Q Consensus        64 ~~Pv~vK~~~~-----~-~~a~~l~~aG~d~I~v~~~gg-~-------------~-~~~~---~~~~~~l~~i~~~~~~~  119 (202)
                      +.|+.+|...+     . +.+..+.+.+.|+++++|..- +             . +.+.   +.....+++++...+++
T Consensus       252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~  331 (398)
T KOG1436|consen  252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK  331 (398)
T ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence            46999998743     2 345556689999999998521 1             0 1111   22455678888888889


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      ||||++|||.|+.|+++.+.+||+.|+++++|.+    +|+    .+++++++||...|...|+.++.|+++.
T Consensus       332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~iG~  396 (398)
T KOG1436|consen  332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAIGK  396 (398)
T ss_pred             CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence            9999999999999999999999999999999875    577    4778999999999999999999999875

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=99.41  E-value=8.4e-12  Score=109.37  Aligned_cols=143  Identities=16%  Similarity=0.248  Sum_probs=102.0

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEecc------C----HHHHHHHHHcCCcEEEeeccCc-CCCCC-------ccchHH
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGIL------T----AEDAKIGVEMGASAIMVSNHGG-RQLDY-------VPASIE  107 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~------~----~~~a~~l~~aG~d~I~v~~~gg-~~~~~-------~~~~~~  107 (202)
                      ..+|++..++++.+++.+++||.+|.+.      +    .+.++.+.++|+|.++++++.+ .+...       .+..++
T Consensus       115 ~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~  194 (333)
T PRK11815        115 MAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYD  194 (333)
T ss_pred             hcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHH
Confidence            4588999999999999999999999752      1    3557888999999999976432 11111       234577


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH-----hh---hcCh----HHHHHHHHHHHHHHH
Q psy16780        108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG-----LA---HSGK----SGVRKVLDILINEFD  175 (202)
Q Consensus       108 ~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~-----~~---~~G~----~~v~~~i~~l~~~L~  175 (202)
                      .+.++++.+ .++|||++|||+|.+|+.++++ |||+||+||+++..     -.   ..|.    ....+.++.+.++++
T Consensus       195 ~i~~v~~~~-~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T PRK11815        195 RVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIE  272 (333)
T ss_pred             HHHHHHHhC-CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence            788887654 2699999999999999999987 79999999987642     10   1121    234566677777777


Q ss_pred             HHHHHhCCCCHHhhhhc
Q psy16780        176 QALALSGCTSVGEIQRE  192 (202)
Q Consensus       176 ~~m~~~G~~~i~el~~~  192 (202)
                      ..... |. .+..+++.
T Consensus       273 ~~~~~-~~-~~~~~rk~  287 (333)
T PRK11815        273 RHLAQ-GG-RLNHITRH  287 (333)
T ss_pred             HHHHc-Cc-hHHHHHHH
Confidence            76653 43 35555544

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=99.40  E-value=2.8e-12  Score=106.01  Aligned_cols=105  Identities=29%  Similarity=0.292  Sum_probs=85.6

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      .++++..++++++++.+++|+.+|....       .+.++.+.++|+|+|++++....+...++..++.+..+++..  +
T Consensus       106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~  183 (231)
T cd02801         106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--S  183 (231)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--C
Confidence            4888899999999999999999998631       244677889999999997643222223455777788887755  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~  153 (202)
                      +||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus       184 ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~  218 (231)
T cd02801         184 IPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG  218 (231)
T ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence            999999999999999999998 8999999999985

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=99.37  E-value=3.7e-12  Score=106.48  Aligned_cols=94  Identities=22%  Similarity=0.185  Sum_probs=77.7

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc-----CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL-----TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~-----~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ||+...++++.+++ .++||++|++.     +.+.++.+.++|+|+|++++..    .+...+++.+.+++  .  ++||
T Consensus       124 ~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~--~ipV  194 (233)
T cd02911         124 DPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T--ELFI  194 (233)
T ss_pred             CHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C--CCEE
Confidence            78888999999998 59999999972     3577889999999998875421    11245667777764  3  7999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        123 YLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      |++|||.|.+|+.+++..|||+||+||+
T Consensus       195 IgnGgI~s~eda~~~l~~GaD~VmiGR~  222 (233)
T cd02911         195 IGNNSVTTIESAKEMFSYGADMVSVARA  222 (233)
T ss_pred             EEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence            9999999999999999999999999996

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>KOG2335|consensus

Probab=99.36  E-value=5.7e-12  Score=109.55  Aligned_cols=106  Identities=25%  Similarity=0.263  Sum_probs=90.5

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~  118 (202)
                      -+|+++-++++.+++.+++||.+|++      -|.+.++.+.++|++.++|+|+...+  ...++.+++.++.+++.++.
T Consensus       124 ~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~  203 (358)
T KOG2335|consen  124 DNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD  203 (358)
T ss_pred             cCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC
Confidence            47888899999999999999999997      25788999999999999996653222  22457799999999998854


Q ss_pred             CcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW  153 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~  153 (202)
                       +|||++|+|.+.+|+-.++. .|||+||+|+.+|.
T Consensus       204 -ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~  238 (358)
T KOG2335|consen  204 -IPVIANGNILSLEDVERCLKYTGADGVMSARGLLY  238 (358)
T ss_pred             -CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence             99999999999999999999 89999999996553

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=99.32  E-value=3e-11  Score=104.85  Aligned_cols=95  Identities=25%  Similarity=0.344  Sum_probs=80.1

Q ss_pred             HHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      +.++++++. +++|+. .+.+.+.++.+.++|+|.|++.++  +|+.  +..+++..++++++.+  ++|||++|||.++
T Consensus       100 ~~i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~  173 (307)
T TIGR03151       100 KYIPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADG  173 (307)
T ss_pred             HHHHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCH
Confidence            578888875 777775 567899999999999999999875  3332  2235788889998877  7999999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +|+.+++++||++|++|+.|+..
T Consensus       174 ~~~~~al~~GA~gV~iGt~f~~t  196 (307)
T TIGR03151       174 RGMAAAFALGAEAVQMGTRFLCA  196 (307)
T ss_pred             HHHHHHHHcCCCEeecchHHhcc
Confidence            99999999999999999999864

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=99.24  E-value=1e-10  Score=102.34  Aligned_cols=97  Identities=27%  Similarity=0.380  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++++++ .++.|+. .+.+++.++.+.++|+|+|++.|.  ||.......++...++++++.+  ++|||+.|||.+
T Consensus       126 ~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPViaAGGI~d  201 (330)
T PF03060_consen  126 PEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVIAAGGIAD  201 (330)
T ss_dssp             HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH---SS-EEEESS--S
T ss_pred             HHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc--CCcEEEecCcCC
Confidence            346677665 4777776 468899999999999999999874  5543311114666788888888  799999999999


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +.++..++++||++|++||.|+.
T Consensus       202 g~~iaaal~lGA~gV~~GTrFl~  224 (330)
T PF03060_consen  202 GRGIAAALALGADGVQMGTRFLA  224 (330)
T ss_dssp             HHHHHHHHHCT-SEEEESHHHHT
T ss_pred             HHHHHHHHHcCCCEeecCCeEEe
Confidence            99999999999999999999995

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=99.21  E-value=9.9e-11  Score=102.69  Aligned_cols=98  Identities=29%  Similarity=0.404  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCC--CCccchHHHHHHHHHHhCCC-cEEEEecC
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQL--DYVPASIEALPEIAKAVGHK-VDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipiia~GG  127 (202)
                      .++++.+++ .+.+|+.+ +.+...++++.++|+|+|++.+.  ||..-  +..+.+...++++++.+  + +|||+.||
T Consensus       117 ~~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG  192 (336)
T COG2070         117 AEFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG  192 (336)
T ss_pred             HHHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence            347777776 57777764 57899999999999999999774  44322  22455677889999988  5 99999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      |.++.++..++++||++|+|||.|+..
T Consensus       193 I~dg~~i~AAlalGA~gVq~GT~Fl~t  219 (336)
T COG2070         193 IADGRGIAAALALGADGVQMGTRFLAT  219 (336)
T ss_pred             ccChHHHHHHHHhccHHHHhhhhhhcc
Confidence            999999999999999999999999953

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=99.17  E-value=1.2e-09  Score=87.90  Aligned_cols=101  Identities=25%  Similarity=0.222  Sum_probs=74.7

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC-CccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD-YVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      .|....+++++|++..  -+++--+.+.|++..+.++|+|.|--...|.|... +..|+++.+.++++.   .+|||+.|
T Consensus        77 Rp~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~---~~pvIaEG  151 (192)
T PF04131_consen   77 RPETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA---DVPVIAEG  151 (192)
T ss_dssp             -SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---TSEEEEES
T ss_pred             CCcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---CCcEeecC
Confidence            3444567999999987  55556789999999999999999976555444321 145788888888763   79999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +|.+++++.+++.+||++|.+|+++.+
T Consensus       152 ri~tpe~a~~al~~GA~aVVVGsAITr  178 (192)
T PF04131_consen  152 RIHTPEQAAKALELGAHAVVVGSAITR  178 (192)
T ss_dssp             S--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred             CCCCHHHHHHHHhcCCeEEEECcccCC
Confidence            999999999999999999999999875

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.14  E-value=1.1e-09  Score=90.46  Aligned_cols=101  Identities=23%  Similarity=0.175  Sum_probs=78.8

Q ss_pred             cccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      +...++++++++..++|+++ .+.+.++++.+.++|+|++.+++++-+..  ....+..+.++++++.+  ++||++.||
T Consensus       105 ~~~~~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GG  181 (221)
T PRK01130        105 ETLAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGR  181 (221)
T ss_pred             CCHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECC
Confidence            34456788887645778775 56788999999999999998754432221  12234567788888777  799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |++++|+.+++++|||+|++|+.++.
T Consensus       182 I~t~~~~~~~l~~GadgV~iGsai~~  207 (221)
T PRK01130        182 INTPEQAKKALELGAHAVVVGGAITR  207 (221)
T ss_pred             CCCHHHHHHHHHCCCCEEEEchHhcC
Confidence            99999999999999999999999864

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.12  E-value=5.8e-10  Score=96.98  Aligned_cols=102  Identities=27%  Similarity=0.194  Sum_probs=79.8

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCCCCC--------ccchHH
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQLDY--------VPASIE  107 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~~~~--------~~~~~~  107 (202)
                      .+..++++++|+.+  ++||.+|+..        +.    +.++.+.++|+|+|.+++........        ....++
T Consensus       192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~  271 (327)
T cd02803         192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE  271 (327)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence            44678999999998  7899999872        33    34678899999999998753321111        122345


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780        108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus       108 ~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~  153 (202)
                      .+..+++.+  ++||+++|||++++++.++++. |||+|++||+++.
T Consensus       272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la  316 (327)
T cd02803         272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA  316 (327)
T ss_pred             HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence            667777777  7999999999999999999998 7999999999986

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.11  E-value=1.3e-09  Score=89.97  Aligned_cols=100  Identities=23%  Similarity=0.221  Sum_probs=80.0

Q ss_pred             ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      ...+.++++++..++|+++ .+.+++++..+.++|+|++.+..+|-+.  .....++++.+.++++.+  ++|+++.|||
T Consensus       110 ~~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI  186 (219)
T cd04729         110 TLAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRI  186 (219)
T ss_pred             CHHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCC
Confidence            5567888888776688877 4578899999999999999765443221  112234677888888777  7999999999


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++++|+.+++++|||+|++||+++.
T Consensus       187 ~~~~~~~~~l~~GadgV~vGsal~~  211 (219)
T cd04729         187 NSPEQAAKALELGADAVVVGSAITR  211 (219)
T ss_pred             CCHHHHHHHHHCCCCEEEEchHHhC
Confidence            9999999999999999999999875

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=99.10  E-value=4.7e-10  Score=98.57  Aligned_cols=103  Identities=20%  Similarity=0.182  Sum_probs=79.8

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCC--CC-CccchHHHHHHHH
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQ--LD-YVPASIEALPEIA  113 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~--~~-~~~~~~~~l~~i~  113 (202)
                      ..|..++|+.||+.++.||.+|+..        +.    +.++.+.++|+|+|.|+++.-..  .. .....+.....++
T Consensus       192 ~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik  271 (337)
T PRK13523        192 YRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIR  271 (337)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHH
Confidence            3557789999999999999999872        43    44578889999999997642111  01 0112345566777


Q ss_pred             HHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        114 KAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       114 ~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +.+  ++||+++|+|++++++.++++.| ||+|++||+++.
T Consensus       272 ~~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia  310 (337)
T PRK13523        272 EHA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR  310 (337)
T ss_pred             hhc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence            776  79999999999999999999987 999999999995

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=99.05  E-value=3.7e-09  Score=86.98  Aligned_cols=102  Identities=17%  Similarity=0.260  Sum_probs=78.7

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcC--------------CC-----------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGR--------------QL-----------------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~--------------~~-----------------   99 (202)
                      ..+.++.+++.+++||++|.. .+.+.++.+.++|+|+|++....-.              .+                 
T Consensus        60 ~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~  139 (217)
T cd00331          60 SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALA  139 (217)
T ss_pred             CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence            568999999999999999864 5677999999999999997542100              00                 


Q ss_pred             -----------C--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 -----------D--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 -----------~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                 +  ...++.+.+.++++.++.++|+++.|||.+++|+.+++.+||++|.+||+++.
T Consensus       140 ~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~  206 (217)
T cd00331         140 LGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR  206 (217)
T ss_pred             cCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence                       0  01123444566655543478999999999999999999999999999999985

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.04  E-value=6e-09  Score=88.52  Aligned_cols=99  Identities=27%  Similarity=0.274  Sum_probs=82.5

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------------------------C------C
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------------------------D------Y  101 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------------------------~------~  101 (202)
                      ..++++.+|+.++.|+.. .+.+.+++..+.++|+|.|--...|+|.-                        .      .
T Consensus       100 ~~~~~~~iK~~~~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~  178 (283)
T cd04727         100 ADEEHHIDKHKFKVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKE  178 (283)
T ss_pred             HHHHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcc
Confidence            467999999988888875 67899999999999999998776555542                        0      0


Q ss_pred             ccchHHHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        102 VPASIEALPEIAKAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       102 ~~~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ..+.++.|.++++.+  ++||+  +.|||.+++++.+++.+||++|++|++++.
T Consensus       179 ~~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~  230 (283)
T cd04727         179 IQAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  230 (283)
T ss_pred             cCCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence            135677888887766  79997  999999999999999999999999999974

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=99.02  E-value=1.2e-09  Score=95.11  Aligned_cols=102  Identities=19%  Similarity=0.175  Sum_probs=76.0

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhC-----
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVG-----  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~-----  117 (202)
                      ..++|.    .++++++ .+++|+. .+.++..++++.++|+|+|++.|+  ||+.  +..++...++++.+.+.     
T Consensus        89 ~~G~P~----~~~~lk~-~Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~  160 (320)
T cd04743          89 AGGRPD----QARALEA-IGISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGP  160 (320)
T ss_pred             cCCChH----HHHHHHH-CCCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcc
Confidence            355664    2466664 4788875 467899999999999999999885  4543  12234444555544431     


Q ss_pred             ---CCcEEEEecCCCCHHHHHHHHHhCC--------CEEEEcHHHHHH
Q psy16780        118 ---HKVDVYLDGGVRYGTDVFKALALGA--------KMVFVGRPALWG  154 (202)
Q Consensus       118 ---~~ipiia~GGI~~~~D~~kal~~GA--------d~V~ig~~~l~~  154 (202)
                         .++|||+.|||.++..+..++++||        ++|+||+.|+..
T Consensus       161 ~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t  208 (320)
T cd04743         161 DKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT  208 (320)
T ss_pred             cccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence               2699999999999999999999998        799999999963

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=99.01  E-value=3.3e-09  Score=94.66  Aligned_cols=104  Identities=23%  Similarity=0.217  Sum_probs=78.5

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEecc----------------------CH----HHHHHHHHcCCcEEEeeccCcCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGIL----------------------TA----EDAKIGVEMGASAIMVSNHGGRQL   99 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~~----------------------~~----~~a~~l~~aG~d~I~v~~~gg~~~   99 (202)
                      ...|..++|+.||+.+  +.||.+|+..                      +.    +.++.+.++|+|+|.|+++...+.
T Consensus       200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~  279 (382)
T cd02931         200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW  279 (382)
T ss_pred             HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence            4566789999999998  5799999862                      22    346778889999999976421111


Q ss_pred             C-Ccc------c-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        100 D-YVP------A-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       100 ~-~~~------~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      . ..+      . .+.....+++.+  ++||+++|||++++++.++++.| ||+|++||+++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la  340 (382)
T cd02931         280 YWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA  340 (382)
T ss_pred             ccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence            1 111      1 133456677777  79999999999999999999986 999999999986

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=99.00  E-value=2.7e-09  Score=89.52  Aligned_cols=104  Identities=17%  Similarity=0.061  Sum_probs=76.8

Q ss_pred             cCccccHHHHHHHHHhc--CCCE---EEEec------cC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         47 LDETINWSDVTWLKTIT--KLPI---VLKGI------LT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~--~~Pv---~vK~~------~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      .||++..+.++.+.+.+  .+|+   .+|..      .+ .+.++.+.++|++.+++++....+...+ ++++.+.++++
T Consensus       109 ~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G-~d~~~i~~i~~  187 (241)
T PRK14024        109 ENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG-PNLELLREVCA  187 (241)
T ss_pred             CCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC-CCHHHHHHHHh
Confidence            46776666766665554  2343   23221      12 4678999999999999976433222334 48899999888


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHH---hCCCEEEEcHHHHH
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALA---LGAKMVFVGRPALW  153 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~---~GAd~V~ig~~~l~  153 (202)
                      .+  ++|||++|||+|.+|+.++..   .||++|++||+++.
T Consensus       188 ~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~  227 (241)
T PRK14024        188 RT--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA  227 (241)
T ss_pred             hC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence            76  799999999999999999875   49999999999985

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=99.00  E-value=1.1e-08  Score=84.88  Aligned_cols=104  Identities=25%  Similarity=0.348  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC--cCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG--GRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++++++ .++|++++ +.+.+.++.+.+.|+|+|.+.+.+  |.........++.+.++++.+  ++||++.|||++
T Consensus        92 ~~~~~~~~~-~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~  167 (236)
T cd04730          92 AEVVERLKA-AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIAD  167 (236)
T ss_pred             HHHHHHHHH-cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCC
Confidence            446666664 46888775 456788899999999999986641  221111124566778887766  799999999999


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHHHhhhcCh
Q psy16780        131 GTDVFKALALGAKMVFVGRPALWGLAHSGK  160 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~~~~~~G~  160 (202)
                      ++|+.+++..|||+|++||+++....+.+.
T Consensus       168 ~~~v~~~l~~GadgV~vgS~l~~~~e~~~~  197 (236)
T cd04730         168 GRGIAAALALGADGVQMGTRFLATEESGAS  197 (236)
T ss_pred             HHHHHHHHHcCCcEEEEchhhhcCcccCCC
Confidence            999999999999999999999976444443

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=98.99  E-value=2.7e-09  Score=94.28  Aligned_cols=105  Identities=12%  Similarity=0.094  Sum_probs=76.8

Q ss_pred             ccccHHHHHHHHHhcC------CCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCCCC--CccchHHH
Q psy16780         49 ETINWSDVTWLKTITK------LPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEA  108 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~------~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~  108 (202)
                      ..+..++++.||+.++      +||.+|+..        +.    +.++.+.++|+|+|.|+.+..+...  ........
T Consensus       194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~  273 (353)
T cd04735         194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI  273 (353)
T ss_pred             HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence            4557789999999874      466666542        23    3467888999999999864322111  11112344


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +..+++.+..++|||++|||++++++.++++.|||+|++||+++.
T Consensus       274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia  318 (353)
T cd04735         274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV  318 (353)
T ss_pred             HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence            555666554579999999999999999999999999999999986

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=98.98  E-value=4.8e-09  Score=92.39  Aligned_cols=103  Identities=19%  Similarity=0.116  Sum_probs=75.0

Q ss_pred             ccccHHHHHHHHHhcCCC--EEEEecc--------CH----HHHHHHHHcC-CcEEEeeccCcCCC----------CCc-
Q psy16780         49 ETINWSDVTWLKTITKLP--IVLKGIL--------TA----EDAKIGVEMG-ASAIMVSNHGGRQL----------DYV-  102 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~P--v~vK~~~--------~~----~~a~~l~~aG-~d~I~v~~~gg~~~----------~~~-  102 (202)
                      ..+..++++.||+.++.+  |.+|+..        +.    +.++.+.++| +|+|.|+...-...          ... 
T Consensus       191 ~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~  270 (343)
T cd04734         191 MRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPP  270 (343)
T ss_pred             hHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCc
Confidence            366788999999998554  5555441        23    4467888898 89999965311110          001 


Q ss_pred             cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       103 ~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ...++....+++.+  ++|||++|+|++++++.++++.| ||+|++||+++.
T Consensus       271 ~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la  320 (343)
T cd04734         271 GPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA  320 (343)
T ss_pred             chhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence            12355667777777  79999999999999999999976 999999999986

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=98.97  E-value=4.1e-09  Score=83.29  Aligned_cols=98  Identities=28%  Similarity=0.251  Sum_probs=70.9

Q ss_pred             cccHHHHHHHHHhc-CCCEEEEeccCHHHHHH-HHHcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEe
Q psy16780         50 TINWSDVTWLKTIT-KLPIVLKGILTAEDAKI-GVEMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~-l~~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~  125 (202)
                      ++..+.++++++.+ +.|+++|.....+.... +.+.|+|.+.++++.++.......  ....+..+++.  .++||+++
T Consensus        99 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~  176 (200)
T cd04722          99 REDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAG  176 (200)
T ss_pred             HHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEE
Confidence            44677999999988 89999998743322222 688999999998764433222111  11233333333  37999999


Q ss_pred             cCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        126 GGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       126 GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      |||++++++.+++..|||+|++||
T Consensus       177 GGi~~~~~~~~~~~~Gad~v~vgs  200 (200)
T cd04722         177 GGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             CCCCCHHHHHHHHHhCCCEEEecC
Confidence            999999999999999999999986

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>cd04732 HisA HisA

Probab=98.97  E-value=9.5e-09  Score=85.18  Aligned_cols=103  Identities=23%  Similarity=0.334  Sum_probs=81.3

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC--------------cC----------------
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG--------------GR----------------   97 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g--------------g~----------------   97 (202)
                      ....++.++++++.+++||++.+. .++++++.+.+.|+|.|+++...              +.                
T Consensus        58 ~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~  137 (234)
T cd04732          58 EPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVAT  137 (234)
T ss_pred             CCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEE
Confidence            344678999999999999999864 78999999999999999875310              00                


Q ss_pred             -------CC------------------------C--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCE
Q psy16780         98 -------QL------------------------D--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKM  144 (202)
Q Consensus        98 -------~~------------------------~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~  144 (202)
                             ..                        +  ...++++.+.++++.+  ++|++++|||++.+|+.+++..||++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~g  215 (234)
T cd04732         138 KGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAG  215 (234)
T ss_pred             CCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCE
Confidence                   00                        0  0113456677776665  79999999999999999999999999


Q ss_pred             EEEcHHHHH
Q psy16780        145 VFVGRPALW  153 (202)
Q Consensus       145 V~ig~~~l~  153 (202)
                      |++||.++.
T Consensus       216 v~vg~~~~~  224 (234)
T cd04732         216 VIVGKALYE  224 (234)
T ss_pred             EEEeHHHHc
Confidence            999999985

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=98.97  E-value=1.3e-08  Score=86.67  Aligned_cols=99  Identities=27%  Similarity=0.242  Sum_probs=82.3

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC---------------------C----------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL---------------------D----------  100 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~---------------------~----------  100 (202)
                      ..+.+..+|+.+++|+.. .+.+.+++.++.+.|+|.|--.+.+||.-                     .          
T Consensus       102 ade~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~  180 (287)
T TIGR00343       102 ADWTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAK  180 (287)
T ss_pred             HHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhc
Confidence            467899999989999886 67899999999999999998876666542                     0          


Q ss_pred             CccchHHHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        101 YVPASIEALPEIAKAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       101 ~~~~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ...+.++.+.++++..  ++||+  +.|||.|++|+..++.+||++|.+||.+..
T Consensus       181 ~~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k  233 (287)
T TIGR00343       181 ELRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  233 (287)
T ss_pred             ccCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence            0135667788887765  79998  999999999999999999999999999874

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=98.94  E-value=7.3e-09  Score=90.82  Aligned_cols=103  Identities=22%  Similarity=0.183  Sum_probs=79.1

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEec--------cCH----HHHHHHHHcCCcEEEeeccCcCCC--CCc-c-chHHHHH
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGI--------LTA----EDAKIGVEMGASAIMVSNHGGRQL--DYV-P-ASIEALP  110 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--------~~~----~~a~~l~~aG~d~I~v~~~gg~~~--~~~-~-~~~~~l~  110 (202)
                      +++..++++.||+.+  +.||.+|+.        .+.    +.++.+.+.|+|+|.++.++.+..  ... + ...+...
T Consensus       204 ~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~  283 (336)
T cd02932         204 MRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAE  283 (336)
T ss_pred             hHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHH
Confidence            445589999999998  789999976        233    345678889999999975432211  111 1 1345566


Q ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      .+++.+  ++||+++|+|.+++++.++++.| ||+|++||+++.
T Consensus       284 ~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~  325 (336)
T cd02932         284 RIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR  325 (336)
T ss_pred             HHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence            777777  79999999999999999999998 999999999986

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.94  E-value=6.6e-09  Score=86.92  Aligned_cols=76  Identities=21%  Similarity=0.242  Sum_probs=61.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|+|.+++++..... ......++.+.++++..  ++|||++|||++.+|+.+++.. |||+|++||+|+.
T Consensus       152 ~~~~~~l~~~G~d~i~v~~i~~~g-~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~  228 (243)
T cd04731         152 VEWAKEVEELGAGEILLTSMDRDG-TKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF  228 (243)
T ss_pred             HHHHHHHHHCCCCEEEEeccCCCC-CCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence            467789999999999997632111 11224677788887766  8999999999999999999997 9999999999985

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=98.94  E-value=2.4e-08  Score=84.76  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcC--C------------C-----------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGR--Q------------L-----------------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~--~------------~-----------------   99 (202)
                      ..+.++.+++.+++||+.|.. .++.++..+.++|||+|.+...--+  +            +                 
T Consensus        99 ~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~  178 (260)
T PRK00278         99 SLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK  178 (260)
T ss_pred             CHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            588999999999999999965 5677899999999999998753210  0            0                 


Q ss_pred             --------C-----CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 --------D-----YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 --------~-----~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                              +     .-.++.+...++.+.+++.+|+|+.|||.+++|+.+++.+|||+|.+|++++.
T Consensus       179 ~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~  245 (260)
T PRK00278        179 LGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR  245 (260)
T ss_pred             cCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence                    0     01233445566666554457999999999999999999999999999999985

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.93  E-value=1.3e-08  Score=89.58  Aligned_cols=101  Identities=19%  Similarity=0.065  Sum_probs=78.3

Q ss_pred             ccccHHHHHHHHHhcCC-CEEEEecc-----------CH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         49 ETINWSDVTWLKTITKL-PIVLKGIL-----------TA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~-Pv~vK~~~-----------~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      ..|..++|+.||+.++. ||.+|++.           +.    +.++.+.+.|+|+|.|+... +........++....+
T Consensus       202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~i  280 (338)
T cd02933         202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFL  280 (338)
T ss_pred             hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHH
Confidence            45577899999998854 89999862           22    44678889999999996531 1111123455667778


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++.+  ++||+++|||+ ++++.++++.| ||+|++||+++.
T Consensus       281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la  319 (338)
T cd02933         281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA  319 (338)
T ss_pred             HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence            8877  89999999997 99999999986 999999999986

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.88  E-value=3.6e-08  Score=82.24  Aligned_cols=102  Identities=24%  Similarity=0.306  Sum_probs=79.6

Q ss_pred             cccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeeccC--------------cC-----------------
Q psy16780         50 TINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNHG--------------GR-----------------   97 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~g--------------g~-----------------   97 (202)
                      ...++.|+++.+.+++|+++.+ +.+.++++.+.++|+|.|+++...              |.                 
T Consensus        62 ~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~  141 (241)
T PRK13585         62 RKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIK  141 (241)
T ss_pred             cccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence            3456788999999999999964 478999999999999999886410              00                 


Q ss_pred             ------CC------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780         98 ------QL------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV  145 (202)
Q Consensus        98 ------~~------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V  145 (202)
                            ..                        ++  ..++++.+.++++.+  ++||++.|||++.+|+.++..+||++|
T Consensus       142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv  219 (241)
T PRK13585        142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGV  219 (241)
T ss_pred             CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence                  00                        00  123456677777666  799999999999999999988999999


Q ss_pred             EEcHHHHH
Q psy16780        146 FVGRPALW  153 (202)
Q Consensus       146 ~ig~~~l~  153 (202)
                      ++||+++.
T Consensus       220 ~vgsa~~~  227 (241)
T PRK13585        220 VVGSALYK  227 (241)
T ss_pred             EEEHHHhc
Confidence            99999985

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=98.88  E-value=5.1e-08  Score=83.19  Aligned_cols=99  Identities=25%  Similarity=0.264  Sum_probs=81.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------------------CC------------C
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------------------LD------------Y  101 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------------------~~------------~  101 (202)
                      ..+.+..+|+.+++|+.. .+.+.+++.++.+.|+|.|--.|-.||.                  +.            .
T Consensus       109 ad~~~~~~K~~f~~~fma-d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~  187 (293)
T PRK04180        109 ADEEYHIDKWDFTVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKE  187 (293)
T ss_pred             hHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccc
Confidence            457899999999999886 6789999999999999999877533332                  00            0


Q ss_pred             ccchHHHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        102 VPASIEALPEIAKAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       102 ~~~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ..++++.|.++++..  ++||+  +.|||.|++|+.+++.+||++|.+||.++.
T Consensus       188 ~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k  239 (293)
T PRK04180        188 LQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK  239 (293)
T ss_pred             cCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence            235677788887765  79998  999999999999999999999999999874

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=98.87  E-value=2.4e-08  Score=87.66  Aligned_cols=104  Identities=19%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--------cCH----HHHHHHHHcCCcEEEeeccCcCCCCC----c-----c-
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--------LTA----EDAKIGVEMGASAIMVSNHGGRQLDY----V-----P-  103 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--------~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~----~-----~-  103 (202)
                      .+.|..++|++||+.+  +.||.+|..        .+.    +.++.+.++|+|.|.|+++.-.+...    .     + 
T Consensus       198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~  277 (338)
T cd04733         198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE  277 (338)
T ss_pred             HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence            3556788999999998  589999985        343    44678889999999997642111110    0     0 


Q ss_pred             -chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        104 -ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       104 -~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                       ..++...++++.+  ++||+++|+|.+.+++.++++.| ||+|++||+++.
T Consensus       278 ~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia  327 (338)
T cd04733         278 AYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL  327 (338)
T ss_pred             hhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence             0134456677777  89999999999999999999987 999999999996

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=98.86  E-value=1.6e-07  Score=79.66  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=79.9

Q ss_pred             HhhhccCccccHHHHHHHHHh-cCCCEEEEeccCH-------HHHHHHHHcCCcEEEeeccC--------------c---
Q psy16780         42 YITSQLDETINWSDVTWLKTI-TKLPIVLKGILTA-------EDAKIGVEMGASAIMVSNHG--------------G---   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~~~-------~~a~~l~~aG~d~I~v~~~g--------------g---   96 (202)
                      .+....+.+..++.++++|+. .++|++.=...++       +.++.+.++|+|++++.--.              |   
T Consensus        64 al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~  143 (256)
T TIGR00262        64 ALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKP  143 (256)
T ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcE
Confidence            345566777789999999977 7899763222333       55889999999998884210              0   


Q ss_pred             -------CC----------C---------C--Ccc------chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         97 -------RQ----------L---------D--YVP------ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        97 -------~~----------~---------~--~~~------~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                             +.          .         .  .|.      ...+.+.++++..  +.||++.|||++++++.++...||
T Consensus       144 i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GA  221 (256)
T TIGR00262       144 IFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGA  221 (256)
T ss_pred             EEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCC
Confidence                   00          0         0  111      1233456665554  679999999999999999999999


Q ss_pred             CEEEEcHHHHHHh
Q psy16780        143 KMVFVGRPALWGL  155 (202)
Q Consensus       143 d~V~ig~~~l~~~  155 (202)
                      |+|.+||+++..+
T Consensus       222 DgvVvGSaiv~~~  234 (256)
T TIGR00262       222 DGVIVGSAIVKII  234 (256)
T ss_pred             CEEEECHHHHHHH
Confidence            9999999998755

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>KOG1799|consensus

Probab=98.85  E-value=1.4e-09  Score=94.25  Aligned_cols=183  Identities=16%  Similarity=0.153  Sum_probs=133.0

Q ss_pred             hhhhhhcccc--ccCCcceecccCCCccccc-----C---CCCcchhH-----HHhhh--------ccCccccHHHHHHH
Q psy16780          3 IYWMKSSLVC--LVLSQYLLANFSGKLSQLS-----N---TSDSSSLL-----AYITS--------QLDETINWSDVTWL   59 (202)
Q Consensus         3 ~~~~~~~~~~--~~p~~~~~~n~~~~~~~~~-----~---~~~~~~~~-----~~~~~--------~~d~~~~~~~i~~i   59 (202)
                      +||++...||  ..|..+.|+..+..-+...     +   ..-++.+.     .|.|.        ..+|...-++..||
T Consensus       189 e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~p~v~~EvC~Wi  268 (471)
T KOG1799|consen  189 EQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQCPIVDCEVCGWI  268 (471)
T ss_pred             HHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCccccccceeccChhhhHHHhhhh
Confidence            6899888888  5899999998876433222     0   11111221     23333        35788888999999


Q ss_pred             HHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC----c--------------CCCCCc-------cchHHHHH
Q psy16780         60 KTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG----G--------------RQLDYV-------PASIEALP  110 (202)
Q Consensus        60 ~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g----g--------------~~~~~~-------~~~~~~l~  110 (202)
                      +....+|++-|...+    .+.++...+.|+.+|...|+-    |              +.-.++       |.....+.
T Consensus       269 ~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~  348 (471)
T KOG1799|consen  269 NAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVM  348 (471)
T ss_pred             hhccccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHH
Confidence            999999999998753    356777888899988776531    1              110111       22344455


Q ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780        111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ  190 (202)
Q Consensus       111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~  190 (202)
                      .+++.++ ..|+.+.|||-++.|.+..+.+|++.|++++..+.    .|.    ..++.+..+|+..|...|.+++++++
T Consensus       349 ~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~----~~V~~~Ca~LK~~m~~~~~~ti~~~~  419 (471)
T KOG1799|consen  349 NIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGY----GHVKTLCAELKDFMKQHNFSTIEEFR  419 (471)
T ss_pred             HHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCc----chHHHHHHHHHHHHHHcCchhhhhcc
Confidence            5666664 68999999999999999999999999999998875    344    34568899999999999999999999


Q ss_pred             hccc
Q psy16780        191 REMV  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      ++-+
T Consensus       420 G~SL  423 (471)
T KOG1799|consen  420 GHSL  423 (471)
T ss_pred             Ccch
Confidence            8854

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.84  E-value=4.6e-08  Score=81.85  Aligned_cols=101  Identities=21%  Similarity=0.258  Sum_probs=79.7

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------CcC---------------CC
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------GGR---------------QL   99 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------gg~---------------~~   99 (202)
                      ...+.|+++.+.+++||.+.+- .+.++++.+.++|++.++++..               +.+               .+
T Consensus        63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw  142 (234)
T PRK13587         63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW  142 (234)
T ss_pred             chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence            3567999999989999999864 7899999999999999988531               100               00


Q ss_pred             ------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        100 ------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       100 ------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                                                    ++  ..++.+.+.++.+..  ++||+++||+++.+|+.+++.+|+++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv  220 (234)
T PRK13587        143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII  220 (234)
T ss_pred             cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence                                          00  123555666666554  79999999999999999999999999999


Q ss_pred             cHHHHH
Q psy16780        148 GRPALW  153 (202)
Q Consensus       148 g~~~l~  153 (202)
                      |++++.
T Consensus       221 G~a~~~  226 (234)
T PRK13587        221 GKAAHQ  226 (234)
T ss_pred             hHHHHh
Confidence            999985

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.83  E-value=2.2e-08  Score=82.96  Aligned_cols=76  Identities=29%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+......+...+ ++++.+.++++.+  ++|+|++|||++.+|+.+++..| |++|++||+++.
T Consensus       149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~  225 (233)
T PRK00748        149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE  225 (233)
T ss_pred             HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence            4678888999999888865321111223 6788889988776  69999999999999999999998 999999999986

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.81  E-value=2.4e-08  Score=84.66  Aligned_cols=76  Identities=24%  Similarity=0.246  Sum_probs=62.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH-HhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL-ALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal-~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+++.+...-+...+ ++++.+.++++..  ++|||++|||++.+|+.+++ ..|+++|.+|++|.+
T Consensus       155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~  231 (258)
T PRK01033        155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF  231 (258)
T ss_pred             HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence            3667889999999999975322112223 5888888888776  79999999999999999999 799999999999987

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=98.81  E-value=6.7e-08  Score=80.27  Aligned_cols=100  Identities=26%  Similarity=0.256  Sum_probs=76.4

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .+|.+...+.++++++.+ .|+.+|.+     ++.++    ++.+.++|+|+|..+.+    +..+..+.+.++.+++..
T Consensus       102 ~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG----~~~~gat~~~v~~m~~~~  176 (221)
T PRK00507        102 SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG----FSTGGATVEDVKLMRETV  176 (221)
T ss_pred             CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHh
Confidence            455566677888888765 57889985     34333    45678999998877543    222345777777777777


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      +++++|.++|||+|.+|+.+.+.+||+.++..+.
T Consensus       177 ~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~  210 (221)
T PRK00507        177 GPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG  210 (221)
T ss_pred             CCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence            7789999999999999999999999999987664

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=98.78  E-value=5.1e-08  Score=86.55  Aligned_cols=97  Identities=21%  Similarity=0.186  Sum_probs=74.7

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccCcCCCC-CccchHHHHHHHHHHhCCCcE
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHGGRQLD-YVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      .+|++..++++++++..   |.+|...+    .+.++.+.++|+|.|.++++.-.+.+ ++..++..+.++.+.+  ++|
T Consensus       116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IP  190 (369)
T TIGR01304       116 LKPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVP  190 (369)
T ss_pred             cChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCC
Confidence            56777788888888853   77887643    47789999999999999765322222 2233466677776666  799


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        122 VYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      ||+ |++.+.+++.+++.+|||+|++|+
T Consensus       191 VI~-G~V~t~e~A~~~~~aGaDgV~~G~  217 (369)
T TIGR01304       191 VIA-GGVNDYTTALHLMRTGAAGVIVGP  217 (369)
T ss_pred             EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence            998 999999999999999999999875

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=98.78  E-value=1.7e-07  Score=78.24  Aligned_cols=100  Identities=25%  Similarity=0.366  Sum_probs=82.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------CcC---------------CC-
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------GGR---------------QL-   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------gg~---------------~~-   99 (202)
                      ..+.+++|.+.+++||-+.+- .+.+.++.++++|++.++++..               |++               .| 
T Consensus        63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~  142 (241)
T COG0106          63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ  142 (241)
T ss_pred             cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence            357999999999999999864 7899999999999999998642               110               00 


Q ss_pred             -----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEE
Q psy16780        100 -----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFV  147 (202)
Q Consensus       100 -----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~i  147 (202)
                                                   |+  ..++.+.+.++++.+  ++|+++||||+|-+|+..+-.+ |...|.+
T Consensus       143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv  220 (241)
T COG0106         143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV  220 (241)
T ss_pred             ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence                                         11  136778888888888  8999999999999999988889 8999999


Q ss_pred             cHHHHH
Q psy16780        148 GRPALW  153 (202)
Q Consensus       148 g~~~l~  153 (202)
                      ||+++.
T Consensus       221 G~ALy~  226 (241)
T COG0106         221 GRALYE  226 (241)
T ss_pred             ehHHhc
Confidence            999985

>PRK07695 transcriptional regulator TenI; Provisional

Probab=98.77  E-value=2.6e-07  Score=75.20  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             HHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC--CccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         56 VTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        56 i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      ++.+++.. +..|.+ .+.+.++++.+.++|+|++.++....+...  ..+..++.++++++.+  ++||++.||| +.+
T Consensus        86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~  161 (201)
T PRK07695         86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE  161 (201)
T ss_pred             HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence            44555544 334444 346788999999999999976532222111  1123566777777666  7999999999 999


Q ss_pred             HHHHHHHhCCCEEEEcHHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++.+++.+||++|+++|.+..
T Consensus       162 ~~~~~~~~Ga~gvav~s~i~~  182 (201)
T PRK07695        162 NTRDVLAAGVSGIAVMSGIFS  182 (201)
T ss_pred             HHHHHHHcCCCEEEEEHHHhc
Confidence            999999999999999999985

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=98.77  E-value=5.6e-08  Score=80.55  Aligned_cols=77  Identities=30%  Similarity=0.287  Sum_probs=62.0

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      .+.++.+.+.|++.+++.......... .++++.+.++++.+  ++|++++|||++.+|+.+++..||++|++||+++..
T Consensus       148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~  224 (230)
T TIGR00007       148 EELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG  224 (230)
T ss_pred             HHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence            467888999999999876532211112 35788888887765  799999999999999999999999999999999863

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.75  E-value=1.2e-07  Score=79.98  Aligned_cols=74  Identities=24%  Similarity=0.283  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccC--cCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHG--GRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPA  151 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~  151 (202)
                      .+.++.+.+.|++.++++...  |+.  . .++++.+.++++..  ++|||++|||++.+|+.+++.. ||++|++|++|
T Consensus       156 ~~~~~~~~~~g~~~ii~~~i~~~g~~--~-g~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al  230 (253)
T PRK02083        156 VEWAKEVEELGAGEILLTSMDRDGTK--N-GYDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIF  230 (253)
T ss_pred             HHHHHHHHHcCCCEEEEcCCcCCCCC--C-CcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence            466788999999999986632  221  1 24678888887766  7999999999999999999975 99999999999


Q ss_pred             HH
Q psy16780        152 LW  153 (202)
Q Consensus       152 l~  153 (202)
                      ..
T Consensus       231 ~~  232 (253)
T PRK02083        231 HF  232 (253)
T ss_pred             Hc
Confidence            85

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=98.75  E-value=1.6e-07  Score=78.01  Aligned_cols=75  Identities=23%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH-HHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK-ALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k-al~~GAd~V~ig~~~l  152 (202)
                      .+.++.+.++|+|.+++++....+.. ..++++.+.++++.+  ++||+++|||++.+|+.+ +...||++|++|++|-
T Consensus       156 ~~~~~~~~~~G~d~i~i~~i~~~g~~-~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h  231 (232)
T TIGR03572       156 VEWAREAEQLGAGEILLNSIDRDGTM-KGYDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH  231 (232)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCc-CCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence            47789999999999999873221111 224678888888776  799999999999999999 5558999999999874

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=98.75  E-value=7.4e-07  Score=75.87  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             HhhhccCccccHHHHHHHHHhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeecc--------------Cc----
Q psy16780         42 YITSQLDETINWSDVTWLKTITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNH--------------GG----   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~--------------gg----   96 (202)
                      .+....+.+..++.++++|+..++|+++=.=.+       ...++.+.++|+|++++..-              .|    
T Consensus        69 AL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I  148 (263)
T CHL00200         69 ALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI  148 (263)
T ss_pred             HHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence            455566777889999999988899966421112       24578899999999998521              00    


Q ss_pred             ------CC-------------------CC--Ccc-----chH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         97 ------RQ-------------------LD--YVP-----ASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        97 ------~~-------------------~~--~~~-----~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                            |.                   ..  +|.     ... +.+..+++..  +.||...+||++++++.++...|||
T Consensus       149 ~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GAD  226 (263)
T CHL00200        149 LLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNIN  226 (263)
T ss_pred             EEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCC
Confidence                  00                   00  111     111 2234444433  7999999999999999999999999


Q ss_pred             EEEEcHHHHHHhh
Q psy16780        144 MVFVGRPALWGLA  156 (202)
Q Consensus       144 ~V~ig~~~l~~~~  156 (202)
                      +|.+||+++..+.
T Consensus       227 GvVVGSalv~~i~  239 (263)
T CHL00200        227 GIVIGSACVQILL  239 (263)
T ss_pred             EEEECHHHHHHHH
Confidence            9999999987553

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=98.74  E-value=9.4e-08  Score=84.75  Aligned_cols=102  Identities=28%  Similarity=0.291  Sum_probs=75.5

Q ss_pred             cccHHHHHHHHHhcC--CCEEEEecc---------C----HHHHHHHHHcC-CcEEEeeccCcCC---CCCccc--hHHH
Q psy16780         50 TINWSDVTWLKTITK--LPIVLKGIL---------T----AEDAKIGVEMG-ASAIMVSNHGGRQ---LDYVPA--SIEA  108 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~--~Pv~vK~~~---------~----~~~a~~l~~aG-~d~I~v~~~gg~~---~~~~~~--~~~~  108 (202)
                      .|..|+++++|+.++  .||.++++.         +    .+.++.+.+.| +|++.+++.+...   .....+  ....
T Consensus       200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~  279 (363)
T COG1902         200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEF  279 (363)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHH
Confidence            357889999999984  589999872         2    24478889999 7999998743211   111101  1122


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ...++...  ++|+|++|+|++++.+.++++.| ||+|.+||+|+.
T Consensus       280 a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la  323 (363)
T COG1902         280 AARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA  323 (363)
T ss_pred             HHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence            34455555  69999999999999999999998 999999999996

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=98.73  E-value=9.6e-08  Score=78.95  Aligned_cols=121  Identities=24%  Similarity=0.327  Sum_probs=90.8

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------------------------
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--------------------------------   94 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--------------------------------   94 (202)
                      .++...+.++++.+.+.+|+.|.+- .+.+++++++.+|||.|.+...                                
T Consensus        58 gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g  137 (256)
T COG0107          58 GRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDG  137 (256)
T ss_pred             cchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCC
Confidence            3566788999999999999999864 7899999999999999887411                                


Q ss_pred             ----------CcCC---C------------------------CCc--cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHH
Q psy16780         95 ----------GGRQ---L------------------------DYV--PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF  135 (202)
Q Consensus        95 ----------gg~~---~------------------------~~~--~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~  135 (202)
                                ||+.   +                        |+.  ..+++.++.+++.+  ++|||+|||..+.+|.+
T Consensus       138 ~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~  215 (256)
T COG0107         138 ENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFV  215 (256)
T ss_pred             CCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHH
Confidence                      1110   0                        111  13556677777777  89999999999999999


Q ss_pred             HHHHhC-CCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780        136 KALALG-AKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGC  183 (202)
Q Consensus       136 kal~~G-Ad~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~  183 (202)
                      +++..| ||++..++-|-+.     .        .-..+++.+|...|.
T Consensus       216 eaf~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi  251 (256)
T COG0107         216 EAFTEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI  251 (256)
T ss_pred             HHHHhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence            999987 9999988888763     2        223456666666554

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=98.73  E-value=1.3e-07  Score=78.90  Aligned_cols=101  Identities=27%  Similarity=0.321  Sum_probs=77.4

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------------------Cc-C----
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------------------GG-R----   97 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------------------gg-~----   97 (202)
                      ...+.|+++.+.+++|+.+.+- .+.++++.+.++|++.|+++..                           .| .    
T Consensus        60 ~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~  139 (229)
T PF00977_consen   60 SNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATN  139 (229)
T ss_dssp             HHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEET
T ss_pred             hHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEec
Confidence            3567899999999999999864 7899999999999999998631                           01 0    


Q ss_pred             CC------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780         98 QL------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV  145 (202)
Q Consensus        98 ~~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V  145 (202)
                      .+                              ++  ..++.+.+.++++.+  ++|+|++|||++.+|+.++...|+++|
T Consensus       140 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gv  217 (229)
T PF00977_consen  140 GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGV  217 (229)
T ss_dssp             TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEE
T ss_pred             CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEE
Confidence            00                              11  135677788887777  899999999999999999999999999


Q ss_pred             EEcHHHHH
Q psy16780        146 FVGRPALW  153 (202)
Q Consensus       146 ~ig~~~l~  153 (202)
                      .+|++|+.
T Consensus       218 ivg~al~~  225 (229)
T PF00977_consen  218 IVGSALHE  225 (229)
T ss_dssp             EESHHHHT
T ss_pred             EEehHhhC
Confidence            99999974

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=98.72  E-value=1.1e-07  Score=84.25  Aligned_cols=103  Identities=17%  Similarity=0.093  Sum_probs=76.0

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEecc------------CH----HHHHHHHHcCCcEEEeeccCc-CCCCCccchHHH
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGIL------------TA----EDAKIGVEMGASAIMVSNHGG-RQLDYVPASIEA  108 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~~------------~~----~~a~~l~~aG~d~I~v~~~gg-~~~~~~~~~~~~  108 (202)
                      ...|..++|+.||+.+  +.||.+|+..            ++    +.++.+.++|+|+|.++...- .... .......
T Consensus       193 R~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~-~~~~~~~  271 (361)
T cd04747         193 RSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF-EGSELNL  271 (361)
T ss_pred             HHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCc-CccchhH
Confidence            3456788999999998  5899999862            22    235567899999999876321 1111 1113344


Q ss_pred             HHHHHHHhCCCcEEEEecCC------------------CCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGV------------------RYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI------------------~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ...+++.+  ++||+++|+|                  ++++++.++++.| ||+|++||+++.
T Consensus       272 ~~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia  333 (361)
T cd04747         272 AGWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS  333 (361)
T ss_pred             HHHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence            45566666  7999999999                  6999999999976 999999999986

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=98.72  E-value=1.6e-07  Score=84.50  Aligned_cols=78  Identities=27%  Similarity=0.350  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHcC-CcEEEeec-cCcCCCCCccchHHHHHHHH---HHh------CCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         74 TAEDAKIGVEMG-ASAIMVSN-HGGRQLDYVPASIEALPEIA---KAV------GHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        74 ~~~~a~~l~~aG-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                      |.++|+.+.+.| +|.|++.. .||+. + ..++...++.+.   +.+      ..++||++.|||.|+.++..++++||
T Consensus       165 t~~eA~~A~~~g~aD~Ivvq~EAGGH~-g-~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGA  242 (418)
T cd04742         165 TEEQAELARRVPVADDITVEADSGGHT-D-NRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGA  242 (418)
T ss_pred             CHHHHHHHHhCCCCCEEEEcccCCCCC-C-CccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCC
Confidence            667777777777 59999874 24432 1 123334444443   333      12599999999999999999999999


Q ss_pred             CEEEEcHHHHH
Q psy16780        143 KMVFVGRPALW  153 (202)
Q Consensus       143 d~V~ig~~~l~  153 (202)
                      ++|++||.|+.
T Consensus       243 d~V~~GT~fla  253 (418)
T cd04742         243 DFIVTGSINQC  253 (418)
T ss_pred             cEEeeccHHHh
Confidence            99999999996

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=98.72  E-value=3e-07  Score=76.92  Aligned_cols=104  Identities=18%  Similarity=0.114  Sum_probs=73.8

Q ss_pred             ccCcccc----HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCC
Q psy16780         46 QLDETIN----WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        46 ~~d~~~~----~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .+|++..    .+.+++.++.+  ++-++.=...++..++++.++|++.|-.-+. -|++  .+..+.+.+..+++..  
T Consensus        99 i~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--  174 (248)
T cd04728          99 IGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--  174 (248)
T ss_pred             ecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--
Confidence            3455543    33444444443  3333311346899999999999999954221 1222  2345677788887764  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++|||+.|||.+++|+.+++++|||+|++++++..
T Consensus       175 ~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~  209 (248)
T cd04728         175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK  209 (248)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence            79999999999999999999999999999999874

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.72  E-value=1.1e-07  Score=91.88  Aligned_cols=103  Identities=18%  Similarity=0.125  Sum_probs=77.2

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCc-CCC--CCc-cchHHHHH
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGG-RQL--DYV-PASIEALP  110 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg-~~~--~~~-~~~~~~l~  110 (202)
                      ..+..++++.||+.+  ++||.+|++.        +.    +.++.+.++|+|.|.|+...- ...  ..+ ........
T Consensus       601 ~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~  680 (765)
T PRK08255        601 LRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFAD  680 (765)
T ss_pred             hHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHH
Confidence            455778999999987  5899999872        22    456888999999999975211 110  011 11223345


Q ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++++.+  ++||+++|+|++++++.++++.| ||+|++||+++.
T Consensus       681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~  722 (765)
T PRK08255        681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA  722 (765)
T ss_pred             HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence            666666  79999999999999999999976 999999999996

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=98.71  E-value=1.2e-07  Score=83.71  Aligned_cols=103  Identities=20%  Similarity=0.075  Sum_probs=75.7

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEec--------cCH----HHHHHHHHcCCcEEEeecc--CcCCC-C---Cccc-hHH
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGI--------LTA----EDAKIGVEMGASAIMVSNH--GGRQL-D---YVPA-SIE  107 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--------~~~----~~a~~l~~aG~d~I~v~~~--gg~~~-~---~~~~-~~~  107 (202)
                      ..+..++++.||+.+  ++||.+|+.        .+.    +.++.+.++|+|+|.|+..  ..+.. .   .... ...
T Consensus       187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~  266 (353)
T cd02930         187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAW  266 (353)
T ss_pred             hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHH
Confidence            566788999999998  456777765        133    4467888999999999652  11111 0   1111 123


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       108 ~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ...++++.+  ++||+++|++++++++.++++.| +|+|++||+++.
T Consensus       267 ~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~  311 (353)
T cd02930         267 ATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA  311 (353)
T ss_pred             HHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence            456677776  89999999999999999999986 999999999986

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR02814 pfaD_fam PfaD family protein

Probab=98.68  E-value=1.9e-07  Score=84.52  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHcC-CcEEEeec-cCcCCCCCccchHHHHHHHH---HHh------CCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         74 TAEDAKIGVEMG-ASAIMVSN-HGGRQLDYVPASIEALPEIA---KAV------GHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        74 ~~~~a~~l~~aG-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                      |+++|+.+.+.| +|.|++.. .||..  +..++...++.+.   +.+      ..++||++.|||.|+.++..++++||
T Consensus       170 t~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGA  247 (444)
T TIGR02814       170 TREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGA  247 (444)
T ss_pred             CHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence            445566666666 59998863 24432  1234445555553   333      22699999999999999999999999


Q ss_pred             CEEEEcHHHHHH
Q psy16780        143 KMVFVGRPALWG  154 (202)
Q Consensus       143 d~V~ig~~~l~~  154 (202)
                      ++|++||.|+..
T Consensus       248 dgV~~GT~flat  259 (444)
T TIGR02814       248 DFIVTGSVNQCT  259 (444)
T ss_pred             cEEEeccHHHhC
Confidence            999999999963

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=98.67  E-value=5.2e-07  Score=75.57  Aligned_cols=104  Identities=19%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             ccCcccc----HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCC
Q psy16780         46 QLDETIN----WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        46 ~~d~~~~----~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .+|+...    .+.+++.++.+  +.-++-=...++..++++.++|++.|-.-+. -|+.  .+..+.+.+..+++..  
T Consensus        99 i~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg--~gi~~~~~i~~i~e~~--  174 (250)
T PRK00208         99 IGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSG--LGLLNPYNLRIIIEQA--  174 (250)
T ss_pred             ecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhc--
Confidence            3455543    33455544443  3333311347899999999999999954221 1222  1344567788877764  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++|||+.|||.+++|+.+++++|||+|++++++..
T Consensus       175 ~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk  209 (250)
T PRK00208        175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV  209 (250)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence            79999999999999999999999999999999874

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.65  E-value=1.6e-07  Score=83.37  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEE
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipii  123 (202)
                      .+|+...++++.+++. .++|.++..  ...+.++.+.++|+|.|+++++...+.+.+.. ++..+.++.+..  ++|||
T Consensus       115 ~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVI  191 (368)
T PRK08649        115 IKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVI  191 (368)
T ss_pred             CCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEE
Confidence            3666677788888875 555555543  24578899999999999997643223333222 455566655555  79999


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      + |+|.|.+++.+++.+|||+|++|+
T Consensus       192 a-G~V~t~e~A~~l~~aGAD~V~VG~  216 (368)
T PRK08649        192 V-GGCVTYTTALHLMRTGAAGVLVGI  216 (368)
T ss_pred             E-eCCCCHHHHHHHHHcCCCEEEECC
Confidence            9 999999999999999999999996

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.62  E-value=7.4e-07  Score=74.46  Aligned_cols=103  Identities=25%  Similarity=0.227  Sum_probs=78.7

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC-------------cC-C----CC---C-----
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG-------------GR-Q----LD---Y-----  101 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g-------------g~-~----~~---~-----  101 (202)
                      .....+.|+++.+.+.+|+.+.+- .+.++++.+.++|++.++++...             |. .    +|   +     
T Consensus        63 ~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~  142 (233)
T cd04723          63 RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKP  142 (233)
T ss_pred             CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccc
Confidence            334577999999988999999864 78999999999999999886421             10 0    00   0     


Q ss_pred             -------------------------------ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        102 -------------------------------VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       102 -------------------------------~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                                                     ..++.+.+.++.+..  .+|++++|||++.+|+.+++.+||+.|.+|++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsa  220 (233)
T cd04723         143 TDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASA  220 (233)
T ss_pred             cCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehH
Confidence                                           012334455555544  79999999999999999999999999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      ++.
T Consensus       221 l~~  223 (233)
T cd04723         221 LHD  223 (233)
T ss_pred             HHc
Confidence            875

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.62  E-value=2.5e-06  Score=72.42  Aligned_cols=126  Identities=15%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             hhhccCccccHHHHHHHH-HhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780         43 ITSQLDETINWSDVTWLK-TITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHG--------------G----   96 (202)
Q Consensus        43 ~~~~~d~~~~~~~i~~i~-~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~g--------------g----   96 (202)
                      +....+.+..++.++++| +..++|+++=.=.+       ....+.+.++|+|++++-.-+              |    
T Consensus        67 L~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I  146 (258)
T PRK13111         67 LAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLI  146 (258)
T ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence            444556667889999999 55689976422111       245788999999998884200              0    


Q ss_pred             ------CC-------------------CC--Cc-----cchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         97 ------RQ-------------------LD--YV-----PASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        97 ------~~-------------------~~--~~-----~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                            +.                   ..  .+     +... +.+..+++..  ++||+.-+||++++|+.+++.. ||
T Consensus       147 ~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-AD  223 (258)
T PRK13111        147 FLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-AD  223 (258)
T ss_pred             EEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CC
Confidence                  00                   00  11     1222 2566666644  7999999999999999998875 99


Q ss_pred             EEEEcHHHHHHhhh--cChHHHHHHHHHHH
Q psy16780        144 MVFVGRPALWGLAH--SGKSGVRKVLDILI  171 (202)
Q Consensus       144 ~V~ig~~~l~~~~~--~G~~~v~~~i~~l~  171 (202)
                      +|.+||+|+..+..  .+.+.+.++++.++
T Consensus       224 GviVGSaiv~~~~~~~~~~~~~~~~~~~l~  253 (258)
T PRK13111        224 GVIVGSALVKIIEENPEALEALAAFVKELK  253 (258)
T ss_pred             EEEEcHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999986533  23344444444443

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.61  E-value=3e-07  Score=77.63  Aligned_cols=76  Identities=21%  Similarity=0.257  Sum_probs=61.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|.|.+++... ......++++.+.++++..  ++|||++|||++.+|+.+++..| |++|++|++|..
T Consensus       158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~  234 (254)
T TIGR00735       158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY  234 (254)
T ss_pred             HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence            4667899999999999965321 1112345777888888776  79999999999999999999988 999999999875

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=98.61  E-value=3.9e-07  Score=77.12  Aligned_cols=106  Identities=20%  Similarity=0.310  Sum_probs=76.2

Q ss_pred             Cccc---cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC----------------c-----------
Q psy16780         48 DETI---NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG----------------G-----------   96 (202)
Q Consensus        48 d~~~---~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g----------------g-----------   96 (202)
                      |+.+   +++.+..+++.+++|+..|-. .++.++..+..+|||+|.+...-                |           
T Consensus        90 e~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~  169 (254)
T PF00218_consen   90 EPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEE  169 (254)
T ss_dssp             -SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence            5554   688999999999999999964 78999999999999998875320                0           


Q ss_pred             -----------------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         97 -----------------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        97 -----------------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                       |.+..-..+.....++...++.++.+|+.+||.+.+|+.++...|+|+|.||++|+.
T Consensus       170 El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~  243 (254)
T PF00218_consen  170 ELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMR  243 (254)
T ss_dssp             HHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred             HHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence                             001111223334455555566678999999999999999999999999999999996

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PLN02591 tryptophan synthase

Probab=98.60  E-value=3.3e-06  Score=71.38  Aligned_cols=112  Identities=18%  Similarity=0.136  Sum_probs=78.6

Q ss_pred             HhhhccCccccHHHHHHHHHhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780         42 YITSQLDETINWSDVTWLKTITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHG--------------G----   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~g--------------g----   96 (202)
                      .+....+.+..++.++++|+..++|+++=.=.+       ....+.+.++|+|++++-.-.              |    
T Consensus        56 AL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I  135 (250)
T PLN02591         56 ALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELV  135 (250)
T ss_pred             HHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
Confidence            455566777789999999988889976422111       245788899999998873100              0    


Q ss_pred             ------CC----------------------CCCc----cchHH-HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         97 ------RQ----------------------LDYV----PASIE-ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        97 ------~~----------------------~~~~----~~~~~-~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                            +.                      ..+.    +.... .+..+++.  .++||+.--||++++|+.+++..|||
T Consensus       136 ~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GAD  213 (250)
T PLN02591        136 LLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGAD  213 (250)
T ss_pred             EEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCC
Confidence                  00                      0011    12222 35556554  38999998899999999999999999


Q ss_pred             EEEEcHHHHHHh
Q psy16780        144 MVFVGRPALWGL  155 (202)
Q Consensus       144 ~V~ig~~~l~~~  155 (202)
                      +|.+||++++.+
T Consensus       214 GvIVGSalVk~i  225 (250)
T PLN02591        214 GVIVGSAMVKAL  225 (250)
T ss_pred             EEEECHHHHHhh
Confidence            999999998754

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.60  E-value=5.4e-07  Score=75.34  Aligned_cols=76  Identities=22%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|++.+.+....+ .....+++++.+.++++.+  ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus        30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~  105 (243)
T cd04731          30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE  105 (243)
T ss_pred             HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence            4778999999999988876432 1123355777888888877  79999999999999999999999999999998874

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.57  E-value=1.1e-06  Score=73.99  Aligned_cols=99  Identities=24%  Similarity=0.250  Sum_probs=77.4

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------C-----------cC----CC--
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--------------G-----------GR----QL--   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--------------g-----------g~----~~--   99 (202)
                      ..+.|++|.+.+ .|+.+.+- .+.++++.+.++|++.|+++..              +           |.    .+  
T Consensus        62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~  140 (241)
T PRK14114         62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA  140 (241)
T ss_pred             hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence            567899998887 79999864 7899999999999999888531              0           10    00  


Q ss_pred             ----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-----C-CC
Q psy16780        100 ----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-----G-AK  143 (202)
Q Consensus       100 ----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-----G-Ad  143 (202)
                                                  ++  ..++.+.+.++++..  ++|||++||+++.+|+.++..+     | ++
T Consensus       141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~  218 (241)
T PRK14114        141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK  218 (241)
T ss_pred             cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence                                        01  125666777776654  7999999999999999999987     6 99


Q ss_pred             EEEEcHHHHH
Q psy16780        144 MVFVGRPALW  153 (202)
Q Consensus       144 ~V~ig~~~l~  153 (202)
                      +|.+|++|+.
T Consensus       219 gvivg~Al~~  228 (241)
T PRK14114        219 GVIVGRAFLE  228 (241)
T ss_pred             EEEEehHHHC
Confidence            9999999875

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=98.55  E-value=7.3e-07  Score=75.13  Aligned_cols=107  Identities=20%  Similarity=0.314  Sum_probs=79.0

Q ss_pred             Cccc---cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc----------------Cc-----------
Q psy16780         48 DETI---NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH----------------GG-----------   96 (202)
Q Consensus        48 d~~~---~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~----------------gg-----------   96 (202)
                      ||.+   ..+.++.+++.+++||..|-- .++.++..+...|+|+|-+.-.                -|           
T Consensus        88 d~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~e  167 (254)
T COG0134          88 DPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEE  167 (254)
T ss_pred             CccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHH
Confidence            5555   789999999999999999964 6777777777777777654211                00           


Q ss_pred             -----------------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         97 -----------------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        97 -----------------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                                       |.+..-..+.+....+...++.+.-+|..+||++++|+.+....|||++.||+++++.
T Consensus       168 El~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~  242 (254)
T COG0134         168 ELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA  242 (254)
T ss_pred             HHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence                             1111112234445556666667788999999999999999999999999999999963

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.53  E-value=1.1e-06  Score=74.04  Aligned_cols=76  Identities=22%  Similarity=0.251  Sum_probs=64.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+....... .....+++.++++++.+  ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus        33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~  108 (253)
T PRK02083         33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA  108 (253)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence            477889999999999997754321 23356788888888877  79999999999999999999999999999998875

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=98.53  E-value=4.9e-06  Score=69.90  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=79.1

Q ss_pred             HhhhccCccccHHHHHHHHHhcCCCEEE--Eecc-----CHHHHHHHHHcCCcEEEeec-c--------------C----
Q psy16780         42 YITSQLDETINWSDVTWLKTITKLPIVL--KGIL-----TAEDAKIGVEMGASAIMVSN-H--------------G----   95 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~v--K~~~-----~~~~a~~l~~aG~d~I~v~~-~--------------g----   95 (202)
                      .+....+.+...+.++++|+..++|+.+  +...     -...++.+.++|+|++++.. +              |    
T Consensus        54 al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i  133 (242)
T cd04724          54 ALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLI  133 (242)
T ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence            3555666778899999999988899765  3221     14568889999999999821 0              0    


Q ss_pred             -----cCC-----------C-----------CCcc----c-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         96 -----GRQ-----------L-----------DYVP----A-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        96 -----g~~-----------~-----------~~~~----~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                           .+.           .           .++.    + ..+.+.++++..  ++||+..|||++.+++.++... ||
T Consensus       134 ~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-AD  210 (242)
T cd04724         134 FLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-AD  210 (242)
T ss_pred             EEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CC
Confidence                 010           0           0111    1 223455665543  7999999999999999999999 99


Q ss_pred             EEEEcHHHHHHhh
Q psy16780        144 MVFVGRPALWGLA  156 (202)
Q Consensus       144 ~V~ig~~~l~~~~  156 (202)
                      +|.+||+++..+.
T Consensus       211 gvVvGSaiv~~~~  223 (242)
T cd04724         211 GVIVGSALVKIIE  223 (242)
T ss_pred             EEEECHHHHHHHH
Confidence            9999999987653

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=98.52  E-value=9.9e-07  Score=78.50  Aligned_cols=103  Identities=8%  Similarity=-0.023  Sum_probs=72.4

Q ss_pred             CccccHHHHHHHHHhcC--CCEEEEecc----------CHHH----HHHHHHcCCcEEEeeccCcCCC----CC--ccch
Q psy16780         48 DETINWSDVTWLKTITK--LPIVLKGIL----------TAED----AKIGVEMGASAIMVSNHGGRQL----DY--VPAS  105 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~--~Pv~vK~~~----------~~~~----a~~l~~aG~d~I~v~~~gg~~~----~~--~~~~  105 (202)
                      ...|..++++.||+.++  +||.+|+..          +.++    ++.+.+ .+|.+.++...-...    ..  ....
T Consensus       199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~  277 (370)
T cd02929         199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQ  277 (370)
T ss_pred             hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCcccc
Confidence            45667899999999984  567777651          2332    344544 489999875311000    00  0112


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        106 IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       106 ~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++....+++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       278 ~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la  324 (370)
T cd02929         278 EPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA  324 (370)
T ss_pred             HHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence            44556677766  79999999999999999999987 999999999996

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=98.52  E-value=3.2e-06  Score=68.79  Aligned_cols=79  Identities=25%  Similarity=0.211  Sum_probs=59.7

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCC--c-cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDY--V-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~--~-~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+.+++..+.+.|+|+|.++.-.-+....  . ...++.+.++++.. +++||++.||| +.+++.+++.+||++|.+||
T Consensus       112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs  189 (212)
T PRK00043        112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVVS  189 (212)
T ss_pred             CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence            57788999999999999886421111111  1 12367788887766 24999999999 78999999999999999999


Q ss_pred             HHHH
Q psy16780        150 PALW  153 (202)
Q Consensus       150 ~~l~  153 (202)
                      .+..
T Consensus       190 ~i~~  193 (212)
T PRK00043        190 AITG  193 (212)
T ss_pred             Hhhc
Confidence            9764

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=2.5e-06  Score=69.56  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=71.6

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +++++  +..--++.--+.+.|++..+.++|+|+|--.-+|.|.  .....|++..++++.+ .  ..+||+.|.+.|++
T Consensus       119 ~i~~~--k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~  193 (229)
T COG3010         119 LIARI--KYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPE  193 (229)
T ss_pred             HHHHh--hcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHH
Confidence            45542  2344566667789999999999999988543333332  1223467777887766 3  89999999999999


Q ss_pred             HHHHHHHhCCCEEEEcHHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.+++..||++|.+|+++-+
T Consensus       194 ~Ak~a~~~Ga~aVvVGsAITR  214 (229)
T COG3010         194 QAKKAIEIGADAVVVGSAITR  214 (229)
T ss_pred             HHHHHHHhCCeEEEECcccCC
Confidence            999999999999999998864

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.50  E-value=9.1e-06  Score=68.31  Aligned_cols=116  Identities=16%  Similarity=0.082  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      +.++.+++ .++..++=..  .+.+.++...+..-..+.++-.+|+.........+.+.++++.. .+.||+..|||++.
T Consensus       120 ~~~~~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~-~~~~i~v~gGI~~~  197 (244)
T PRK13125        120 KYVEIIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV-GNKYLVVGFGLDSP  197 (244)
T ss_pred             HHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc-CCCCEEEeCCcCCH
Confidence            45555554 3666665443  34677787777765555554344442211112233566666554 25789999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      +++.+++.+|||++.+||.++..+..++.+...++++.++
T Consensus       198 e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~~  237 (244)
T PRK13125        198 EDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKIR  237 (244)
T ss_pred             HHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999986443333344444444443

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.49  E-value=1.3e-06  Score=72.92  Aligned_cols=101  Identities=23%  Similarity=0.241  Sum_probs=73.6

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeeccC-------------cCC---C---------CC----
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNHG-------------GRQ---L---------DY----  101 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~g-------------g~~---~---------~~----  101 (202)
                      ..+.++++.+.+++||++.+ +.+.++++.+.+.|++.++++...             |.-   +         ++    
T Consensus        61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~  140 (228)
T PRK04128         61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE  140 (228)
T ss_pred             hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence            46788999888999999885 588999999999999999885321             000   0         00    


Q ss_pred             -ccchHHHHH------------------------HHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        102 -VPASIEALP------------------------EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       102 -~~~~~~~l~------------------------~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                       .....+.+.                        ++.+.+ .++|||++|||++.+|+.++..+|+++|.+|++|+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~  216 (228)
T PRK04128        141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE  216 (228)
T ss_pred             CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence             001111111                        122221 369999999999999999999999999999999975

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=98.49  E-value=1.9e-06  Score=72.52  Aligned_cols=100  Identities=14%  Similarity=0.035  Sum_probs=75.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc---------------------------CcC--C---
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH---------------------------GGR--Q---   98 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~---------------------------gg~--~---   98 (202)
                      ..+.|+++.+.+++|+.+.+ +.+.++++.+.+.|++.|+++..                           .|.  .   
T Consensus        62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~  141 (243)
T TIGR01919        62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN  141 (243)
T ss_pred             hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence            46789999999999999985 57999999999999999988531                           010  0   


Q ss_pred             --C-----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH---HhCC
Q psy16780         99 --L-----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL---ALGA  142 (202)
Q Consensus        99 --~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal---~~GA  142 (202)
                        +                             ++  ..++.+.+.++++..  ++|||++||+++.+|+.+.-   ..|+
T Consensus       142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv  219 (243)
T TIGR01919       142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV  219 (243)
T ss_pred             CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence              0                             01  124555555555544  79999999999999999874   3599


Q ss_pred             CEEEEcHHHHH
Q psy16780        143 KMVFVGRPALW  153 (202)
Q Consensus       143 d~V~ig~~~l~  153 (202)
                      ++|.+|++|+.
T Consensus       220 ~gvivg~Al~~  230 (243)
T TIGR01919       220 SVAIGGKLLYA  230 (243)
T ss_pred             eEEEEhHHHHc
Confidence            99999999874

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=98.48  E-value=9.9e-07  Score=72.87  Aligned_cols=101  Identities=24%  Similarity=0.245  Sum_probs=78.8

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .++.+.+.+.|+.+++.+.-++.+|.+     ++-+.    .+.+.++|+|+|.-|.+.    ..+..+.+.+.-+++.+
T Consensus       105 ~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf----~~~gAT~edv~lM~~~v  180 (228)
T COG0274         105 SGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF----SAGGATVEDVKLMKETV  180 (228)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHh
Confidence            677788889999999998766888876     33332    456789999999986532    23455777777677777


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      ++++.|=++|||||.+|+.+++.+||+-++..+.
T Consensus       181 g~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~  214 (228)
T COG0274         181 GGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG  214 (228)
T ss_pred             ccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence            7789999999999999999999999877766553

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.48  E-value=1.9e-06  Score=72.78  Aligned_cols=76  Identities=24%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+....+. ......+++.+.++++.+  ++||++.|||++.+|+.+++.+||+.|.+|++++.
T Consensus        33 ~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~  108 (254)
T TIGR00735        33 VELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK  108 (254)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence            37788999999999999774321 123456778888888877  79999999999999999999999999999999875

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=98.48  E-value=1.9e-06  Score=71.55  Aligned_cols=97  Identities=20%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+.++.-+..+  +.-|+-=...++-.+++++++|+..|---+. -|+.  .|..+...++.+++.+  ++|||.++||.
T Consensus       110 ~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg--~Gi~n~~~l~~i~~~~--~vPvIvDAGiG  185 (247)
T PF05690_consen  110 IETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG--RGIQNPYNLRIIIERA--DVPVIVDAGIG  185 (247)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---
T ss_pred             hHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccC--cCCCCHHHHHHHHHhc--CCcEEEeCCCC
Confidence            34454444433  4444433346789999999999999986543 1221  2455777888888888  89999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++.|+.+++++|||+|.+.+++..
T Consensus       186 ~pSdaa~AMElG~daVLvNTAiA~  209 (247)
T PF05690_consen  186 TPSDAAQAMELGADAVLVNTAIAK  209 (247)
T ss_dssp             SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred             CHHHHHHHHHcCCceeehhhHHhc
Confidence            999999999999999999998864

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=98.48  E-value=5.8e-07  Score=79.08  Aligned_cols=102  Identities=27%  Similarity=0.299  Sum_probs=75.5

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEecc--------C-H---HHHHHHHHcCCcEEEeeccCcCC-------CCC-cc--ch
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGIL--------T-A---EDAKIGVEMGASAIMVSNHGGRQ-------LDY-VP--AS  105 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~~--------~-~---~~a~~l~~aG~d~I~v~~~gg~~-------~~~-~~--~~  105 (202)
                      .|..++|+.||+.+  +.||.+|++.        + .   +.++.+.++|+|.+.++......       ... ..  ..
T Consensus       200 Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (341)
T PF00724_consen  200 RFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYN  279 (341)
T ss_dssp             HHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTT
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchh
Confidence            44688999999987  6889999872        1 2   23677888999998776432110       011 11  12


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        106 IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       106 ~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ......+++.+  ++|||++|||++++.+.++++.| ||+|++||+++.
T Consensus       280 ~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la  326 (341)
T PF00724_consen  280 LDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA  326 (341)
T ss_dssp             HHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred             hhhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence            34456667777  89999999999999999999988 999999999996

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=98.45  E-value=5.1e-06  Score=70.03  Aligned_cols=102  Identities=21%  Similarity=0.259  Sum_probs=78.5

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--C--------------c------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--G--------------G------------------   96 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--g--------------g------------------   96 (202)
                      +.+.++.+++.+++||+.|.. .++.++..+..+|||+|.+.-.  +              |                  
T Consensus        90 s~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~  169 (247)
T PRK13957         90 SLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALD  169 (247)
T ss_pred             CHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHh
Confidence            788999999999999999975 7888888888899999987532  1              0                  


Q ss_pred             ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                                |.+..-..+.....++...++.+..+|+.+||.+++|+.++... +|+|.||+.++..
T Consensus       170 ~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~  236 (247)
T PRK13957        170 CGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK  236 (247)
T ss_pred             CCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence                      00011122334455666667777889999999999999987776 9999999999963

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.45  E-value=3.3e-06  Score=72.27  Aligned_cols=89  Identities=17%  Similarity=0.137  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC---CCcEEEEec
Q psy16780         52 NWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG---HKVDVYLDG  126 (202)
Q Consensus        52 ~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipiia~G  126 (202)
                      ..+.++++|+..+  .+|.+ ++.+.++++.+.++|+|.|-+.+.          +.+.+.++.+..+   +++.+.++|
T Consensus       168 i~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsG  236 (273)
T PRK05848        168 LKEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASG  236 (273)
T ss_pred             HHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEEC
Confidence            3568899988775  45555 778999999999999999988663          4455555544332   468899999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      || +++.+.++..+|+|.+.+|++..
T Consensus       237 gI-t~~ni~~ya~~GvD~IsvG~l~~  261 (273)
T PRK05848        237 NI-TLENINAYAKSGVDAISSGSLIH  261 (273)
T ss_pred             CC-CHHHHHHHHHcCCCEEEeChhhc
Confidence            99 99999999999999999999765

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=98.44  E-value=1.9e-06  Score=71.08  Aligned_cols=99  Identities=24%  Similarity=0.331  Sum_probs=72.4

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .++.+...+.++++++.++ .+.+|.+     ++.+.    ++.+.++|+|+|..+.+-    ..+..+...+..+++.+
T Consensus        98 ~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf----~~~gat~~dv~~m~~~v  172 (211)
T TIGR00126        98 DGNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGF----GAGGATVEDVRLMRNTV  172 (211)
T ss_pred             CCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHHh
Confidence            5667777889999998874 3344544     33333    466789999999986531    11234566666666667


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +++++|-++|||++.+++.+.+.+||+.++..+
T Consensus       173 ~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~  205 (211)
T TIGR00126       173 GDTIGVKASGGVRTAEDAIAMIEAGASRIGASA  205 (211)
T ss_pred             ccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence            678999999999999999999999999877644

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=98.44  E-value=9.3e-06  Score=66.76  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ...++++..+ ..+.|++.. +.+++++..+.+.|+|+|.+.-.       ....++.+..+++.++.++|+++.||| +
T Consensus        92 ~~~~v~~~~~-~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~  161 (206)
T PRK09140         92 TDPEVIRRAV-ALGMVVMPG-VATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAVGGV-T  161 (206)
T ss_pred             CCHHHHHHHH-HCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEECCC-C
Confidence            3344555544 557888875 88999999999999999998321       122356677776665336999999999 8


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+++.+.+++||++|.++|.+..
T Consensus       162 ~~n~~~~~~aGa~~vav~s~l~~  184 (206)
T PRK09140        162 PENLAPYLAAGAAGFGLGSALYR  184 (206)
T ss_pred             HHHHHHHHHCCCeEEEEehHhcc
Confidence            89999999999999999999874

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=98.42  E-value=2.7e-06  Score=77.59  Aligned_cols=130  Identities=17%  Similarity=0.199  Sum_probs=91.4

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--Cc--------------------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--GG--------------------------------   96 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--gg--------------------------------   96 (202)
                      +.+.++.+|+.+++||..|-. .++.++..+..+|||+|-+...  +.                                
T Consensus        98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~  177 (454)
T PRK09427         98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIA  177 (454)
T ss_pred             CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHh
Confidence            788999999999999999964 7788888888888888776421  00                                


Q ss_pred             ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHH
Q psy16780         97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKV  166 (202)
Q Consensus        97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~  166 (202)
                                |.+..-..+.....++...+++++.+|+.+||+|++|+..+ ..|||+|.||++++..      +...+.
T Consensus       178 ~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~------~d~~~~  250 (454)
T PRK09427        178 LGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE------DDLELA  250 (454)
T ss_pred             CCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC------CCHHHH
Confidence                      00111122334445566667778889999999999999886 4589999999999963      222233


Q ss_pred             HHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        167 LDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       167 i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                      ++.+..   ....-||.++.++.+.
T Consensus       251 ~~~L~~---~~vKICGit~~eda~~  272 (454)
T PRK09427        251 VRKLIL---GENKVCGLTRPQDAKA  272 (454)
T ss_pred             HHHHhc---cccccCCCCCHHHHHH
Confidence            333322   3456799999888763

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.41  E-value=9.8e-06  Score=66.97  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=73.4

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..+ ..++|++- ++.|+.++..+.++|+|+|.+.-..       ......++.++..+ +.+|++++||
T Consensus        94 sP~~~~~v~~~~~-~~~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~-p~ip~~atGG  163 (213)
T PRK06552         94 SPSFNRETAKICN-LYQIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPL-PQVNVMVTGG  163 (213)
T ss_pred             CCCCCHHHHHHHH-HcCCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhC-CCCEEEEECC
Confidence            4555556777665 45889886 6789999999999999999984311       11245566665555 3699999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |. .+++.+.+++||++|.+|+.+..
T Consensus       164 I~-~~N~~~~l~aGa~~vavgs~l~~  188 (213)
T PRK06552        164 VN-LDNVKDWFAAGADAVGIGGELNK  188 (213)
T ss_pred             CC-HHHHHHHHHCCCcEEEEchHHhC
Confidence            97 69999999999999999999974

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=98.40  E-value=4.5e-06  Score=74.13  Aligned_cols=99  Identities=12%  Similarity=-0.069  Sum_probs=71.6

Q ss_pred             cccHHHHHHHHHhcC-CCEEEEec-----------cCHHH-----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         50 TINWSDVTWLKTITK-LPIVLKGI-----------LTAED-----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~-~Pv~vK~~-----------~~~~~-----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      .|..|+|++||+.++ -+|.+|++           .+.++     ++.+.+.|+|+|.|+....  ....+........+
T Consensus       210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~--~~~~~~~~~~~~~i  287 (362)
T PRK10605        210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW--AGGEPYSDAFREKV  287 (362)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc--cCCccccHHHHHHH
Confidence            346789999999883 25888874           13333     5778889999999986311  01111122333556


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++.+  ++||+++|++ +++.+.++++.| ||+|++||+++.
T Consensus       288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia  326 (362)
T PRK10605        288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA  326 (362)
T ss_pred             HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence            6666  6899999996 899999999998 999999999996

>KOG2333|consensus

Probab=98.39  E-value=4.8e-06  Score=75.30  Aligned_cols=104  Identities=19%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEecc--------CHHHHHHHH-HcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGIL--------TAEDAKIGV-EMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~~--------~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ...+++......+ ++|+.||++.        ..+.+..+. +-|+++|+++|+...|.+....+|+.+.++++.+...+
T Consensus       376 rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l  455 (614)
T KOG2333|consen  376 RLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSAL  455 (614)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCc
Confidence            3455666666666 4699999972        134455555 88999999988776677777889999999988887679


Q ss_pred             EEEEecCCCCHHHHHHHHHhC--CCEEEEcH-----HHHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALG--AKMVFVGR-----PALWG  154 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G--Ad~V~ig~-----~~l~~  154 (202)
                      |+|++|.|-|.+|-.+.+..+  .+.|||||     ||+|.
T Consensus       456 ~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt  496 (614)
T KOG2333|consen  456 PLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFT  496 (614)
T ss_pred             eeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence            999999999999999888865  89999999     66664

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=98.39  E-value=4.5e-06  Score=70.09  Aligned_cols=97  Identities=16%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+.++.-+..+  +.-|..=...++-.++++.++|+..|---+. -|+.  .|..+...|+.+.+..  ++||+.++||.
T Consensus       124 ~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg--~Gl~n~~~l~~i~e~~--~vpVivdAGIg  199 (267)
T CHL00162        124 IGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSG--QGLQNLLNLQIIIENA--KIPVIIDAGIG  199 (267)
T ss_pred             HHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCcC
Confidence            44555544443  3333332336788999999999999876443 1221  2355777788777754  79999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +++|+.+++++|||+|.+.|++..
T Consensus       200 t~sDa~~AmElGaDgVL~nSaIak  223 (267)
T CHL00162        200 TPSEASQAMELGASGVLLNTAVAQ  223 (267)
T ss_pred             CHHHHHHHHHcCCCEEeecceeec
Confidence            999999999999999999999875

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=98.35  E-value=6.9e-06  Score=78.30  Aligned_cols=103  Identities=20%  Similarity=0.250  Sum_probs=79.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc--C--------------c------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH--G--------------G------------------   96 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~--g--------------g------------------   96 (202)
                      +.+.+..+|+.+++||..|. +.++.++..+..+|||+|.+...  +              |                  
T Consensus        99 s~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~  178 (695)
T PRK13802         99 SLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIA  178 (695)
T ss_pred             CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh
Confidence            78999999999999999997 47888888888899999887532  0              0                  


Q ss_pred             ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                                |.+..-..+.....++...++.++.+|+.+||++++|+..+..+|||+|.||++++..
T Consensus       179 ~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~  246 (695)
T PRK13802        179 AGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA  246 (695)
T ss_pred             CCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence                      0011112234444556666667788999999999999999999999999999998863

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=98.33  E-value=6.4e-06  Score=67.33  Aligned_cols=97  Identities=27%  Similarity=0.308  Sum_probs=68.2

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .++.+...+.+.++++.+. ++.+|.+     ++.+.    ++.+.++|+|+|..+.+    +.....+...+..+++.+
T Consensus        97 ~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG----~~~~~at~~~v~~~~~~~  171 (203)
T cd00959          97 SGDYEAVYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTG----FGPGGATVEDVKLMKEAV  171 (203)
T ss_pred             CCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHh
Confidence            3455667778888888874 3334433     34333    56789999999998632    111234555555555555


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +.++||-++|||+|.+++.+.+.+||+.++.
T Consensus       172 ~~~v~ik~aGGikt~~~~l~~~~~g~~riG~  202 (203)
T cd00959         172 GGRVGVKAAGGIRTLEDALAMIEAGATRIGT  202 (203)
T ss_pred             CCCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence            5689999999999999999999999987653

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.32  E-value=8.8e-06  Score=67.38  Aligned_cols=76  Identities=28%  Similarity=0.345  Sum_probs=62.3

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+..-.+. ..+..++.+.+.++++.+  .+||++.|||++.+|+.+++.+||+.|.+|+.++.
T Consensus        33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~  108 (233)
T PRK00748         33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK  108 (233)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence            46688889999999998764222 123346778888887776  79999999999999999999999999999999875

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=98.31  E-value=1.3e-05  Score=63.71  Aligned_cols=87  Identities=24%  Similarity=0.182  Sum_probs=63.4

Q ss_pred             CCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCC-C--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH
Q psy16780         64 KLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLD-Y--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA  139 (202)
Q Consensus        64 ~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~-~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~  139 (202)
                      +.+..+... .+.++++.+.+.|+|+|.++....+... +  .+..++.+.++++..  ++||++.|||. .+++.+++.
T Consensus        93 ~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~  169 (196)
T cd00564          93 GPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLA  169 (196)
T ss_pred             CCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHH
Confidence            334444443 5778899999999999998643111111 1  234566777776654  79999999995 799999999


Q ss_pred             hCCCEEEEcHHHHH
Q psy16780        140 LGAKMVFVGRPALW  153 (202)
Q Consensus       140 ~GAd~V~ig~~~l~  153 (202)
                      +||++|.+|+.++.
T Consensus       170 ~Ga~~i~~g~~i~~  183 (196)
T cd00564         170 AGADGVAVISAITG  183 (196)
T ss_pred             cCCCEEEEehHhhc
Confidence            99999999999874

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>cd04732 HisA HisA

Probab=98.31  E-value=8.4e-06  Score=67.49  Aligned_cols=76  Identities=34%  Similarity=0.416  Sum_probs=62.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|+|.+.+....+. ..+...+++.+.++++.+  .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus        32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~  107 (234)
T cd04732          32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK  107 (234)
T ss_pred             HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence            47788899999999999753221 122345677888888877  79999999999999999999999999999998764

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=98.30  E-value=7.8e-06  Score=66.09  Aligned_cols=89  Identities=18%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             HHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780         54 SDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD  133 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D  133 (202)
                      +.++.. +..+.|+++ ++.|++++..+.++|+|+|.+...       .+...+.++.+++.+ +++|+++.||| +.++
T Consensus        88 ~~~~~~-~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~-~~~p~~a~GGI-~~~n  156 (190)
T cd00452          88 EVVKAA-NRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPF-PQVRFMPTGGV-SLDN  156 (190)
T ss_pred             HHHHHH-HHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhC-CCCeEEEeCCC-CHHH
Confidence            444444 446888887 556999999999999999998431       112345566665544 35999999999 9999


Q ss_pred             HHHHHHhCCCEEEEcHHHHH
Q psy16780        134 VFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       134 ~~kal~~GAd~V~ig~~~l~  153 (202)
                      +.+.+.+||++|.+++.+..
T Consensus       157 ~~~~~~~G~~~v~v~s~i~~  176 (190)
T cd00452         157 AAEWLAAGVVAVGGGSLLPK  176 (190)
T ss_pred             HHHHHHCCCEEEEEchhcch
Confidence            99999999999999998763

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=98.30  E-value=1.1e-05  Score=68.51  Aligned_cols=98  Identities=21%  Similarity=0.214  Sum_probs=75.2

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc---C---------------cCC---------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH---G---------------GRQ---------------   98 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~---g---------------g~~---------------   98 (202)
                      ..+.|++|++ +++||.+.+-...++++.++++||+.|+++..   .               |.+               
T Consensus        72 n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~  150 (262)
T PLN02446         72 LAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRY  150 (262)
T ss_pred             cHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCE
Confidence            4778999998 88999999764459999999999999998631   0               100               


Q ss_pred             ------C------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         99 ------L------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        99 ------~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                            +                              |+  ..++.+.+.++++..  ++|||++|||++.+|+.+...+
T Consensus       151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~  228 (262)
T PLN02446        151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVA  228 (262)
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHc
Confidence                  0                              11  124555666666654  7999999999999999999987


Q ss_pred             --CCCEEEEcHHHH
Q psy16780        141 --GAKMVFVGRPAL  152 (202)
Q Consensus       141 --GAd~V~ig~~~l  152 (202)
                        |...|.+|++++
T Consensus       229 g~g~~gvIvGkAl~  242 (262)
T PLN02446        229 GGGRVDVTVGSALD  242 (262)
T ss_pred             CCCCEEEEEEeeHH
Confidence              468899999984

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=98.27  E-value=1e-05  Score=75.25  Aligned_cols=47  Identities=15%  Similarity=0.133  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW  153 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~  153 (202)
                      +.+.+..+++.+  ++|||+|||+.+.+|+.+++. .||+++..++.|-+
T Consensus       470 d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~  517 (538)
T PLN02617        470 DIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR  517 (538)
T ss_pred             CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence            344455555555  799999999999999999998 67999999998876

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=98.26  E-value=5.6e-06  Score=68.73  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=43.6

Q ss_pred             cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       103 ~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .++.+.+.++++..  ++|+|++|||++.+|+.++...||++|.+|++|+.
T Consensus       170 G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~  218 (221)
T TIGR00734       170 GPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK  218 (221)
T ss_pred             CCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence            35778888887766  79999999999999999988899999999999875

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>KOG0399|consensus

Probab=98.24  E-value=7.4e-06  Score=80.51  Aligned_cols=141  Identities=24%  Similarity=0.213  Sum_probs=100.9

Q ss_pred             cHHHHHHHHHh----c-CCCEEEEeccCH---HHHHHHHHcCCcEEEeecc-CcCCCC---C---ccchHHH-HHHHHHH
Q psy16780         52 NWSDVTWLKTI----T-KLPIVLKGILTA---EDAKIGVEMGASAIMVSNH-GGRQLD---Y---VPASIEA-LPEIAKA  115 (202)
Q Consensus        52 ~~~~i~~i~~~----~-~~Pv~vK~~~~~---~~a~~l~~aG~d~I~v~~~-gg~~~~---~---~~~~~~~-l~~i~~~  115 (202)
                      +.|.++++.-.    - +..|.||++...   -.|.-..++.||.|.|+|| |||..+   +   ..-+|+. +.+.++.
T Consensus      1081 SIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQt 1160 (2142)
T KOG0399|consen 1081 SIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQT 1160 (2142)
T ss_pred             cHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhH
Confidence            45555554322    1 457888987432   2244566788999999998 555422   1   1224443 5554443


Q ss_pred             -----hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc--------------------------C-hHHH
Q psy16780        116 -----VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS--------------------------G-KSGV  163 (202)
Q Consensus       116 -----~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~--------------------------G-~~~v  163 (202)
                           ++.++-+-.+|+++|+.|+.-|..+||+-.++++.-+.++.|.                          | ++.|
T Consensus      1161 Lv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Pehv 1240 (2142)
T KOG0399|consen 1161 LVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHV 1240 (2142)
T ss_pred             HhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHH
Confidence                 4567888899999999999999999999999999655443321                          2 5678


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        164 RKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       164 ~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      .+++-.+.+|++.+|..+|+++++|+.+.
T Consensus      1241 VNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1241 VNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence            89999999999999999999999999765

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=98.24  E-value=1.2e-05  Score=70.44  Aligned_cols=106  Identities=23%  Similarity=0.305  Sum_probs=74.8

Q ss_pred             Cccc---cHHHHHHHHHh-cCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc--C-------------------------
Q psy16780         48 DETI---NWSDVTWLKTI-TKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH--G-------------------------   95 (202)
Q Consensus        48 d~~~---~~~~i~~i~~~-~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~--g-------------------------   95 (202)
                      |+.+   +.+.++.+|+. +++||..|. +.++.++..+..+|||+|-+...  .                         
T Consensus       161 d~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~  240 (338)
T PLN02460        161 DEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDE  240 (338)
T ss_pred             CcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            4544   78999999998 999999997 46777777777778887665321  0                         


Q ss_pred             ----------c--------CCCCCccchHHHHHHHHH-----Hh-CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780         96 ----------G--------RQLDYVPASIEALPEIAK-----AV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus        96 ----------g--------~~~~~~~~~~~~l~~i~~-----~~-~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                                |        |.+..-..+.....++..     .+ +.++.+|+.+||++++|+..+..+|||+|.||..|
T Consensus       241 ~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsL  320 (338)
T PLN02460        241 REMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESL  320 (338)
T ss_pred             HHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
Confidence                      0        001111122333334433     23 23566899999999999999999999999999999


Q ss_pred             HH
Q psy16780        152 LW  153 (202)
Q Consensus       152 l~  153 (202)
                      ++
T Consensus       321 Mr  322 (338)
T PLN02460        321 VK  322 (338)
T ss_pred             hC
Confidence            96

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=98.21  E-value=4.6e-05  Score=63.29  Aligned_cols=95  Identities=11%  Similarity=0.051  Sum_probs=67.8

Q ss_pred             HHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCC-CCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         56 VTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQL-DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +...|+..+--.+++.+  .+.+++..+.+.|+|+|.++.-.-+.. ...+...+.+.++++.+  ++||++-||| +.+
T Consensus       100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~  176 (221)
T PRK06512        100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA  176 (221)
T ss_pred             HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence            45555554323455553  467888888899999999865311111 11223455666676665  7999999999 899


Q ss_pred             HHHHHHHhCCCEEEEcHHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++.+++.+||++|.+-|.++.
T Consensus       177 n~~~~~~~GA~giAvisai~~  197 (221)
T PRK06512        177 SAVEVAETGAEFVALERAVFD  197 (221)
T ss_pred             HHHHHHHhCCCEEEEhHHhhC
Confidence            999999999999999999874

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.21  E-value=2.3e-05  Score=65.52  Aligned_cols=99  Identities=17%  Similarity=0.066  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------CcCC-----------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------GGRQ-----------------   98 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------gg~~-----------------   98 (202)
                      ..+.|+++.+....|+.+.+- .+.++++.+.+.|++.|+++..               |+..                 
T Consensus        61 n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g  140 (232)
T PRK13586         61 NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG  140 (232)
T ss_pred             hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence            357899998854459999864 7899999999999999988531               1100                 


Q ss_pred             C-----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780         99 L-----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        99 ~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +                             ++  ..++.+.+..+.+.   ..|+|++|||++.+|+.++..+|+++|.+
T Consensus       141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gviv  217 (232)
T PRK13586        141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIV  217 (232)
T ss_pred             CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence            0                             00  01344444444332   34699999999999999999999999999


Q ss_pred             cHHHHH
Q psy16780        148 GRPALW  153 (202)
Q Consensus       148 g~~~l~  153 (202)
                      |++++.
T Consensus       218 g~Aly~  223 (232)
T PRK13586        218 GMAFYL  223 (232)
T ss_pred             ehhhhc
Confidence            999874

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=98.19  E-value=4.2e-05  Score=62.16  Aligned_cols=96  Identities=25%  Similarity=0.221  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cC-HHHHHHHHHcCCcEEEeeccCcCC-CCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LT-AEDAKIGVEMGASAIMVSNHGGRQ-LDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~-~~~a~~l~~aG~d~I~v~~~gg~~-~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      .+.++.+++ .++|+++-..  .+ .+.++.+.+.|+|.|.+..  |.. ...++...+.+.++++.++ ..++.++|||
T Consensus        92 ~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p--g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI  167 (206)
T TIGR03128        92 KGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT--GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI  167 (206)
T ss_pred             HHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC--CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc
Confidence            456666665 5899988643  22 5788889999999998842  211 1122345556677766553 4677779999


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                       +.+++.+++..||+.|.+||.++.
T Consensus       168 -~~~n~~~~~~~Ga~~v~vGsai~~  191 (206)
T TIGR03128       168 -NLDTIPDVIKLGPDIVIVGGAITK  191 (206)
T ss_pred             -CHHHHHHHHHcCCCEEEEeehhcC
Confidence             888999999999999999999764

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=98.19  E-value=2e-05  Score=66.17  Aligned_cols=75  Identities=28%  Similarity=0.241  Sum_probs=61.8

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|+|.+.+..-.+.  .+...+.+.+.++.+.+  .+|+.+.|||+|.+|+.+++.+||+.|.+|+.++.
T Consensus        35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~  109 (241)
T PRK14024         35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE  109 (241)
T ss_pred             HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence            47788889999998887543221  13346778888888877  79999999999999999999999999999998874

>KOG2334|consensus

Probab=98.18  E-value=1.2e-05  Score=71.61  Aligned_cols=106  Identities=26%  Similarity=0.196  Sum_probs=84.9

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      -||+....++..+.+...+|+.+|++.      +.+..+++.+.|+.++.|+++..-.....+++.+.+++++..++ .+
T Consensus       132 t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~-~V  210 (477)
T KOG2334|consen  132 TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQ-MV  210 (477)
T ss_pred             cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhc-cc
Confidence            477777889999999999999999872      46778999999999999976432122234677888999888874 39


Q ss_pred             EEEEecCCCC---HHHHHHHHH-hCCCEEEEcHHHHH
Q psy16780        121 DVYLDGGVRY---GTDVFKALA-LGAKMVFVGRPALW  153 (202)
Q Consensus       121 piia~GGI~~---~~D~~kal~-~GAd~V~ig~~~l~  153 (202)
                      |||++||..+   +.|+.+... .|++.||++|...+
T Consensus       211 ~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~  247 (477)
T KOG2334|consen  211 PVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES  247 (477)
T ss_pred             eEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence            9999999998   888888776 69999999996554

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=98.17  E-value=0.00016  Score=61.40  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             HhhhccCccccHHHHHHHHHh-cCCCEEEEeccC-------HHHHHHHHHcCCcEEEeecc--------------Cc---
Q psy16780         42 YITSQLDETINWSDVTWLKTI-TKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNH--------------GG---   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~--------------gg---   96 (202)
                      .+.....++.+++.++.+|+. .++|+++=.-.+       ....+.+.++|+|++.+---              .|   
T Consensus        71 AL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~  150 (265)
T COG0159          71 ALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP  150 (265)
T ss_pred             HHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence            456667778889999999966 689988743222       24578899999999988411              00   


Q ss_pred             -------CC-------------------C---CCcc-c----hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         97 -------RQ-------------------L---DYVP-A----SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        97 -------~~-------------------~---~~~~-~----~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                             +.                   .   .+.. +    ..+.+..+++..  ++||+.-=||++++++.++... |
T Consensus       151 I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-A  227 (265)
T COG0159         151 IFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-A  227 (265)
T ss_pred             EEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-C
Confidence                   00                   0   0111 1    122345555544  8999987799999999999999 9


Q ss_pred             CEEEEcHHHHHHhhh
Q psy16780        143 KMVFVGRPALWGLAH  157 (202)
Q Consensus       143 d~V~ig~~~l~~~~~  157 (202)
                      |+|.+||++...+..
T Consensus       228 DGVIVGSAiV~~i~~  242 (265)
T COG0159         228 DGVIVGSAIVKIIEE  242 (265)
T ss_pred             CeEEEcHHHHHHHHh
Confidence            999999999986543

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.15  E-value=2.7e-05  Score=63.05  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             HHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH
Q psy16780         57 TWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK  136 (202)
Q Consensus        57 ~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k  136 (202)
                      ...++..+++.+++ +.|++++..+.+.|+|+|-+.-+   .   .....+.+..++..+ +++|+++.||| +.+++..
T Consensus        98 ~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt---~---~~~G~~~l~~~~~~~-~~ipvvaiGGI-~~~n~~~  168 (187)
T PRK07455         98 IEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV---Q---AVGGADYIKSLQGPL-GHIPLIPTGGV-TLENAQA  168 (187)
T ss_pred             HHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC---C---cccCHHHHHHHHhhC-CCCcEEEeCCC-CHHHHHH
Confidence            33455567788776 89999999999999999998321   0   112356677776655 36999999999 7799999


Q ss_pred             HHHhCCCEEEEcHHHH
Q psy16780        137 ALALGAKMVFVGRPAL  152 (202)
Q Consensus       137 al~~GAd~V~ig~~~l  152 (202)
                      .+++||++|.++|.++
T Consensus       169 ~l~aGa~~vav~s~i~  184 (187)
T PRK07455        169 FIQAGAIAVGLSGQLF  184 (187)
T ss_pred             HHHCCCeEEEEehhcc
Confidence            9999999999999875

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=98.14  E-value=3.6e-05  Score=62.19  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhcCCCEEEE--eccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITKLPIVLK--GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK--~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++.+++ .++++++=  ...+++++..+...|+|.+.+.-....+..+.....+.++++++.  .++|++++|||+ 
T Consensus        93 ~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~-  168 (202)
T cd04726          93 KKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL--LGVKVAVAGGIT-  168 (202)
T ss_pred             HHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh--cCCCEEEECCcC-
Confidence            446666664 47777753  346788887788999999888421000111123345566666544  379999999996 


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+++.+++..|||+|.+||++..
T Consensus       169 ~~~i~~~~~~Gad~vvvGsai~~  191 (202)
T cd04726         169 PDTLPEFKKAGADIVIVGRAITG  191 (202)
T ss_pred             HHHHHHHHhcCCCEEEEeehhcC
Confidence            99999999999999999999863

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PLN02411 12-oxophytodienoate reductase

Probab=98.14  E-value=2.7e-05  Score=69.82  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=68.7

Q ss_pred             cccHHHHHHHHHhcC-CCEEEEeccC---------------HHHHHHHHHc------CCcEEEeeccCcCC---CC---C
Q psy16780         50 TINWSDVTWLKTITK-LPIVLKGILT---------------AEDAKIGVEM------GASAIMVSNHGGRQ---LD---Y  101 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~-~Pv~vK~~~~---------------~~~a~~l~~a------G~d~I~v~~~gg~~---~~---~  101 (202)
                      .|..++|++||+.++ -+|.+|++..               .+.++.+.+.      |+|+|.|+......   ..   .
T Consensus       216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~  295 (391)
T PLN02411        216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH  295 (391)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence            346789999999984 2588887621               1234444442      59999998632110   00   0


Q ss_pred             ccc-h-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        102 VPA-S-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       102 ~~~-~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ... . ......+++.+  ++|||++|++ +.+++.++++.| ||+|.+||+|+.
T Consensus       296 ~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia  347 (391)
T PLN02411        296 GSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS  347 (391)
T ss_pred             CCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence            111 1 12345677777  7899999999 579999999998 999999999996

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=98.10  E-value=5.1e-05  Score=68.77  Aligned_cols=95  Identities=23%  Similarity=0.228  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcCCCEEEEe-c-cC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         54 SDVTWLKTITKLPIVLKG-I-LT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~-~-~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      +.++.+++ .+.++++.. . .+ .+.++.+.+.|+|+|.++. +.+.....+...+.++++++.+  ++||++.||| +
T Consensus        98 ~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~  172 (430)
T PRK07028         98 DAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-D  172 (430)
T ss_pred             HHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-C
Confidence            45666665 578888753 2 23 5667888999999997753 1111111223455677776655  6999999999 6


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.+.+++++||+.+.+||.++.
T Consensus       173 ~~n~~~~l~aGAdgv~vGsaI~~  195 (430)
T PRK07028        173 AETAAKAVAAGADIVIVGGNIIK  195 (430)
T ss_pred             HHHHHHHHHcCCCEEEEChHHcC
Confidence            89999999999999999999874

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=98.10  E-value=5.8e-05  Score=63.85  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc---C---------------cCC--------C---C--
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH---G---------------GRQ--------L---D--  100 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~---g---------------g~~--------~---~--  100 (202)
                      ..+.|++|.+.+++||.+.+-...++++.+.++||+.|.+++.   .               |.+        .   +  
T Consensus        64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~  143 (253)
T TIGR02129        64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR  143 (253)
T ss_pred             cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence            7789999999999999998765569999999999999999751   0               100        0   0  


Q ss_pred             ------Cc-----------------------------------cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH
Q psy16780        101 ------YV-----------------------------------PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA  139 (202)
Q Consensus       101 ------~~-----------------------------------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~  139 (202)
                            ++                                   .++++.+.++++..  ++|||+|||+++.+|+.++-.
T Consensus       144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~  221 (253)
T TIGR02129       144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE  221 (253)
T ss_pred             EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence                  00                                   12233333333333  799999999999999998855


Q ss_pred             h--CCCEEEEcHHHHH
Q psy16780        140 L--GAKMVFVGRPALW  153 (202)
Q Consensus       140 ~--GAd~V~ig~~~l~  153 (202)
                      +  |...+.+|++++.
T Consensus       222 ~~~g~~~aIvG~Alf~  237 (253)
T TIGR02129       222 LSKGKVDLTIGSALDI  237 (253)
T ss_pred             hcCCCCcEEeeehHHH
Confidence            4  5555788887663

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=98.09  E-value=0.00013  Score=62.07  Aligned_cols=115  Identities=18%  Similarity=0.179  Sum_probs=76.8

Q ss_pred             HhhhccCccccHHHHHHHH-HhcCCCEEEEecc------C-HHHHHHHHHcCCcEEEeecc--------------Cc---
Q psy16780         42 YITSQLDETINWSDVTWLK-TITKLPIVLKGIL------T-AEDAKIGVEMGASAIMVSNH--------------GG---   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~-~~~~~Pv~vK~~~------~-~~~a~~l~~aG~d~I~v~~~--------------gg---   96 (202)
                      .+....+.+..++.++++| +..++|+++=.=.      . ...++.+.++|+|++++-.-              .|   
T Consensus        64 AL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~  143 (259)
T PF00290_consen   64 ALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDL  143 (259)
T ss_dssp             HHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EE
T ss_pred             HHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeE
Confidence            4566778888899999999 7779998863211      1 24678889999999988421              00   


Q ss_pred             -------CC----------------------CCCcc----ch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         97 -------RQ----------------------LDYVP----AS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        97 -------~~----------------------~~~~~----~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                             +.                      ..+..    .. .+.+..+++..  +.||+.-=||++++++.+.. .||
T Consensus       144 I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~a  220 (259)
T PF00290_consen  144 IPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGA  220 (259)
T ss_dssp             EEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTS
T ss_pred             EEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccC
Confidence                   00                      01111    11 22355565544  89999977999999998887 999


Q ss_pred             CEEEEcHHHHHHhhhcC
Q psy16780        143 KMVFVGRPALWGLAHSG  159 (202)
Q Consensus       143 d~V~ig~~~l~~~~~~G  159 (202)
                      |+|.+||+++..+...+
T Consensus       221 DGvIVGSa~v~~i~~~~  237 (259)
T PF00290_consen  221 DGVIVGSAFVKIIEENG  237 (259)
T ss_dssp             SEEEESHHHHHHHHHTC
T ss_pred             CEEEECHHHHHHHHHcc
Confidence            99999999998765433

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=98.08  E-value=8.6e-05  Score=59.82  Aligned_cols=79  Identities=24%  Similarity=0.160  Sum_probs=59.2

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCC-C--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLD-Y--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~-~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+.+++..+.+.|+|++.++.-.-+..+ .  .+..++.+.++++.. .++||++.||| +.+++.+++.+|+++|.+++
T Consensus       104 h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~  181 (196)
T TIGR00693       104 HNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-IDIPIVAIGGI-TLENAAEVLAAGADGVAVVS  181 (196)
T ss_pred             CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEhH
Confidence            5778888899999999998653222111 1  122466677776554 25999999999 58999999999999999999


Q ss_pred             HHHH
Q psy16780        150 PALW  153 (202)
Q Consensus       150 ~~l~  153 (202)
                      .++.
T Consensus       182 ~i~~  185 (196)
T TIGR00693       182 AIMQ  185 (196)
T ss_pred             HhhC
Confidence            9874

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.07  E-value=7.3e-05  Score=64.47  Aligned_cols=90  Identities=16%  Similarity=0.259  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHhcCCCEEEE-eccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         52 NWSDVTWLKTITKLPIVLK-GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      ..+.++.+|+..+....+- .+.+.+++..+.++|+|+|-+++.+          .+.+.++.+.+   .+++|+.++||
T Consensus       182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~----------~e~l~~av~~~~~~~~~i~leAsGG  251 (288)
T PRK07428        182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMP----------VDLMQQAVQLIRQQNPRVKIEASGN  251 (288)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHHHhcCCCeEEEEECC
Confidence            4557888888765322222 4578999999999999999997632          23334433322   45799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      | +.+.+.+..++|+|.+.+|++..
T Consensus       252 I-t~~ni~~ya~tGvD~Isvgsl~~  275 (288)
T PRK07428        252 I-TLETIRAVAETGVDYISSSAPIT  275 (288)
T ss_pred             C-CHHHHHHHHHcCCCEEEEchhhh
Confidence            9 69999999999999999999765

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=98.07  E-value=0.00011  Score=64.86  Aligned_cols=83  Identities=24%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             EEEec-cCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCE
Q psy16780         68 VLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKM  144 (202)
Q Consensus        68 ~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~  144 (202)
                      +++.+ .+.++++.+.+.|+|+|.++.-..|.-  ...+..++.+..+++..  ++|+++-|||. .+++.+.+.+||++
T Consensus       242 iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ni~~l~~~Ga~g  318 (347)
T PRK02615        242 IIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSNIPEVLQAGAKR  318 (347)
T ss_pred             EEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCcE
Confidence            44443 578999999999999999865322211  11234566777776655  79999999995 89999999999999


Q ss_pred             EEEcHHHHH
Q psy16780        145 VFVGRPALW  153 (202)
Q Consensus       145 V~ig~~~l~  153 (202)
                      |.+++.++.
T Consensus       319 VAvisaI~~  327 (347)
T PRK02615        319 VAVVRAIMG  327 (347)
T ss_pred             EEEeHHHhC
Confidence            999999974

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=98.06  E-value=0.00019  Score=59.54  Aligned_cols=122  Identities=18%  Similarity=0.234  Sum_probs=79.8

Q ss_pred             ccCccc--cHHHHHHHHHh-cCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc---------------C---------c
Q psy16780         46 QLDETI--NWSDVTWLKTI-TKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH---------------G---------G   96 (202)
Q Consensus        46 ~~d~~~--~~~~i~~i~~~-~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~---------------g---------g   96 (202)
                      .+=|++  ..+.++++|+. ++.|+=+=+ +.+| ..++.+.++|+|.|+++--               |         .
T Consensus        37 ~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~  116 (220)
T PRK08883         37 HYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPA  116 (220)
T ss_pred             cccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCC
Confidence            334554  45799999987 688866554 3445 4578888999999998621               0         0


Q ss_pred             CC----------C-----------CCc----cchHHHHHHHHHHhCC---CcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         97 RQ----------L-----------DYV----PASIEALPEIAKAVGH---KVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        97 ~~----------~-----------~~~----~~~~~~l~~i~~~~~~---~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      |.          .           .++    +...+.++++++....   ++||.++|||. .+.+.++.++|||.+.+|
T Consensus       117 Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvG  195 (220)
T PRK08883        117 TPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAG  195 (220)
T ss_pred             CCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence            11          0           122    2244456666554421   48999999998 889999999999999999


Q ss_pred             HHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        149 RPALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       149 ~~~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                      |++..      .+...+.++.+++.+
T Consensus       196 SaIf~------~~d~~~~i~~l~~~~  215 (220)
T PRK08883        196 SAIFG------QPDYKAVIDEMRAEL  215 (220)
T ss_pred             HHHhC------CCCHHHHHHHHHHHH
Confidence            99763      122334455555443

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.05  E-value=8.9e-05  Score=63.13  Aligned_cols=91  Identities=22%  Similarity=0.324  Sum_probs=64.7

Q ss_pred             cHHHHHHHHHh---cCCCEEEEe------c---cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780         52 NWSDVTWLKTI---TKLPIVLKG------I---LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA  115 (202)
Q Consensus        52 ~~~~i~~i~~~---~~~Pv~vK~------~---~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~  115 (202)
                      ..+.++++++.   +++|+++=.      .   .+.+.    ++.+.+.|+|+|..+-.         ...+.+.++.+.
T Consensus       124 ~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~---------~~~~~l~~~~~~  194 (267)
T PRK07226        124 MLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT---------GDPESFREVVEG  194 (267)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC---------CCHHHHHHHHHh
Confidence            44566666654   489987731      1   23333    57788999999987521         134566666554


Q ss_pred             hCCCcEEEEecCCC--CHHHHHHHH----HhCCCEEEEcHHHHH
Q psy16780        116 VGHKVDVYLDGGVR--YGTDVFKAL----ALGAKMVFVGRPALW  153 (202)
Q Consensus       116 ~~~~ipiia~GGI~--~~~D~~kal----~~GAd~V~ig~~~l~  153 (202)
                      .  ++||+++|||+  +.+++.+.+    .+||+++.+||.++.
T Consensus       195 ~--~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~  236 (267)
T PRK07226        195 C--PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ  236 (267)
T ss_pred             C--CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence            4  79999999999  778777765    899999999999875

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=98.04  E-value=0.0001  Score=61.22  Aligned_cols=91  Identities=24%  Similarity=0.361  Sum_probs=65.1

Q ss_pred             cHHHHHHHHH---hcCCCEEEEecc---------CHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780         52 NWSDVTWLKT---ITKLPIVLKGIL---------TAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA  115 (202)
Q Consensus        52 ~~~~i~~i~~---~~~~Pv~vK~~~---------~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~  115 (202)
                      ..+.++++++   ..++|+++=...         +.+.    ++.+.++|+|+|-+...         .+.+.++++++.
T Consensus       107 ~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~---------~~~~~~~~i~~~  177 (235)
T cd00958         107 MLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT---------GDAESFKEVVEG  177 (235)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC---------CCHHHHHHHHhc
Confidence            3445666654   358999883211         2333    45588999999998532         145667777766


Q ss_pred             hCCCcEEEEecCC--CCHHH----HHHHHHhCCCEEEEcHHHHH
Q psy16780        116 VGHKVDVYLDGGV--RYGTD----VFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       116 ~~~~ipiia~GGI--~~~~D----~~kal~~GAd~V~ig~~~l~  153 (202)
                      .  .+||+++||+  .|.+|    +.+++.+||++|.+||.++.
T Consensus       178 ~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~  219 (235)
T cd00958         178 C--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ  219 (235)
T ss_pred             C--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence            5  7999999997  67766    77778899999999999985

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=98.04  E-value=7e-05  Score=62.15  Aligned_cols=76  Identities=25%  Similarity=0.279  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+..-.+ .......+.+.+.++++.+  ++||++.|||++.+|+.+++..||+.|.+|+.++.
T Consensus        33 ~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~  108 (232)
T TIGR03572        33 VNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE  108 (232)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence            4667888899999888765322 1112345777788887776  79999999999999999999999999999998874

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=98.04  E-value=8.2e-05  Score=61.25  Aligned_cols=103  Identities=26%  Similarity=0.285  Sum_probs=74.7

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc-----CcCCC----------------------
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH-----GGRQL----------------------   99 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-----gg~~~----------------------   99 (202)
                      -|-.-.-+.++.+++.+++||.|- ...++..-.+.++|+|.|.++|.     -|+.+                      
T Consensus        44 vDIAadp~LV~~~~~~s~lPICVS-aVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~Ls  122 (242)
T PF04481_consen   44 VDIAADPELVKLAKSLSNLPICVS-AVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLS  122 (242)
T ss_pred             EEecCCHHHHHHHHHhCCCCeEee-cCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceE
Confidence            344445678999999999999984 35678888889999999999874     22210                      


Q ss_pred             -----------------------------CCc-----------------cchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780        100 -----------------------------DYV-----------------PASIEALPEIAKAVGHKVDVYLDGGVRYGTD  133 (202)
Q Consensus       100 -----------------------------~~~-----------------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D  133 (202)
                                                   +++                 .|++.+..++.+.+  ++||++..|+.+- .
T Consensus       123 VTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~v-T  199 (242)
T PF04481_consen  123 VTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAV-T  199 (242)
T ss_pred             EecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchh-h
Confidence                                         111                 23444455565666  8999999998764 4


Q ss_pred             HHHHHHhCCCEEEEcHHHHH
Q psy16780        134 VFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       134 ~~kal~~GAd~V~ig~~~l~  153 (202)
                      +=-++++||++|++|++.=+
T Consensus       200 ~PmAiaaGAsGVGVGSavn~  219 (242)
T PF04481_consen  200 APMAIAAGASGVGVGSAVNR  219 (242)
T ss_pred             HHHHHHcCCcccchhHHhhh
Confidence            55688999999999998753

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=98.02  E-value=5.9e-05  Score=62.63  Aligned_cols=77  Identities=23%  Similarity=0.196  Sum_probs=61.9

Q ss_pred             cCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      -++-.+++++++|+..|-=-+. -|+.  -|..+...|..+.+..  ++|||.+-||.++.|+..++++|+|+|.+-+++
T Consensus       139 dD~v~arrLee~GcaavMPl~aPIGSg--~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi  214 (262)
T COG2022         139 DDPVLARRLEEAGCAAVMPLGAPIGSG--LGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI  214 (262)
T ss_pred             CCHHHHHHHHhcCceEeccccccccCC--cCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence            4677899999999988763322 1221  2455777788887777  899999999999999999999999999999988


Q ss_pred             HH
Q psy16780        152 LW  153 (202)
Q Consensus       152 l~  153 (202)
                      ..
T Consensus       215 A~  216 (262)
T COG2022         215 AR  216 (262)
T ss_pred             hc
Confidence            75

>PRK04302 triosephosphate isomerase; Provisional

Probab=98.02  E-value=0.00016  Score=59.96  Aligned_cols=97  Identities=25%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCC
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVR  129 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~  129 (202)
                      .++..++ .++.+++ .+.+.+.++.+.+.|.|.|-+-..  .|+.......+.+.+.++.+.+   ..++||++-|||+
T Consensus       106 ~v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~  183 (223)
T PRK04302        106 VVERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS  183 (223)
T ss_pred             HHHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence            3444443 3665554 456778888888889998876432  1221110011222233322222   2369999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +++++..++..|||+|.+|++++.
T Consensus       184 ~~e~~~~~~~~gadGvlVGsa~l~  207 (223)
T PRK04302        184 TGEDVKAALELGADGVLLASGVVK  207 (223)
T ss_pred             CHHHHHHHHcCCCCEEEEehHHhC
Confidence            999999999999999999999985

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=98.02  E-value=0.00012  Score=62.50  Aligned_cols=86  Identities=21%  Similarity=0.265  Sum_probs=66.2

Q ss_pred             HHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      ..++++|+..+  .++.+ .+.+.++++.+.++|+|+|-+++-          ..+.++++.+.++.++|+.++||| +.
T Consensus       166 ~av~~~r~~~~~~~~Igv-ev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~  233 (265)
T TIGR00078       166 KAVKRARAAAPFALKIEV-EVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TL  233 (265)
T ss_pred             HHHHHHHHhCCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CH
Confidence            36788888764  33332 557899999999999999988652          235566665555446999999999 68


Q ss_pred             HHHHHHHHhCCCEEEEcHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~  151 (202)
                      +.+.+..+.|+|.+.+|...
T Consensus       234 ~ni~~~a~~Gvd~Isvgait  253 (265)
T TIGR00078       234 DNLEEYAETGVDVISSGALT  253 (265)
T ss_pred             HHHHHHHHcCCCEEEeCHHH
Confidence            99999999999999996543

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=98.02  E-value=5.3e-05  Score=65.99  Aligned_cols=95  Identities=19%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             HHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEe-eccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         55 DVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMV-SNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        55 ~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v-~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+++.++.+  +.-+++=...++..++++.++|+-+|-- ..--|+.  .+..+.+.+..+.+..  ++||+.++||.++
T Consensus       186 ~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg--~gv~~p~~i~~~~e~~--~vpVivdAGIg~~  261 (326)
T PRK11840        186 TLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSG--LGIQNPYTIRLIVEGA--TVPVLVDAGVGTA  261 (326)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCCCCH
Confidence            444444432  3334332347899999999999955543 1111211  1234677788777764  7999999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +|+.+++++|||+|.+.|++..
T Consensus       262 sda~~AmelGadgVL~nSaIa~  283 (326)
T PRK11840        262 SDAAVAMELGCDGVLMNTAIAE  283 (326)
T ss_pred             HHHHHHHHcCCCEEEEcceecc
Confidence            9999999999999999998864

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.01  E-value=0.0001  Score=63.26  Aligned_cols=86  Identities=14%  Similarity=0.280  Sum_probs=65.4

Q ss_pred             HHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780         55 DVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD  133 (202)
Q Consensus        55 ~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D  133 (202)
                      -++.+|+..+ .+|.+ .+-+.++++.+.++|+|+|-+++.          +.+.+.++.+..++++|+.++||| +.+.
T Consensus       179 av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~n  246 (277)
T PRK05742        179 AVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NEST  246 (277)
T ss_pred             HHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHH
Confidence            4666666542 33333 457899999999999999988542          345556655555568999999999 6899


Q ss_pred             HHHHHHhCCCEEEEcHHHH
Q psy16780        134 VFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       134 ~~kal~~GAd~V~ig~~~l  152 (202)
                      +.+..++|+|.+.+|+...
T Consensus       247 i~~~a~tGvD~Isvg~lt~  265 (277)
T PRK05742        247 LRVIAETGVDYISIGAMTK  265 (277)
T ss_pred             HHHHHHcCCCEEEEChhhc
Confidence            9999999999999998654

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=98.00  E-value=0.00017  Score=58.49  Aligned_cols=103  Identities=24%  Similarity=0.273  Sum_probs=66.3

Q ss_pred             cccHHHHHHHHHhcCCCEE--EEeccCHHHHHHHHHcCCcEEEeeccC--------------cCC------C--------
Q psy16780         50 TINWSDVTWLKTITKLPIV--LKGILTAEDAKIGVEMGASAIMVSNHG--------------GRQ------L--------   99 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~--vK~~~~~~~a~~l~~aG~d~I~v~~~g--------------g~~------~--------   99 (202)
                      .+..+.++++++..+.|+.  ++.....+.++.+.++|+|+|+++...              |..      .        
T Consensus        42 ~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~  121 (210)
T TIGR01163        42 TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLE  121 (210)
T ss_pred             ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence            3567788888876667752  443344566777788888888775321              000      0        


Q ss_pred             ------C-----------Cc----cchHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 ------D-----------YV----PASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 ------~-----------~~----~~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                            +           ++    +...+.+.++++.++   ..+|+++.|||+ .+++.+++..|||.+.+||+++.
T Consensus       122 ~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~  198 (210)
T TIGR01163       122 YVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG  198 (210)
T ss_pred             HHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence                  0           01    111223344444332   237999999996 69999999999999999999973

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.00  E-value=8.9e-05  Score=61.77  Aligned_cols=76  Identities=33%  Similarity=0.422  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+-...+ ...........+.++++..  .+|++..|||++.+|+..++.+||+.|.+|+..+.
T Consensus        35 ~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~  110 (241)
T PRK13585         35 VEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE  110 (241)
T ss_pred             HHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence            4778899999999998754321 1112244667788887766  79999999999999999999999999999997763

>PLN02334 ribulose-phosphate 3-epimerase

Probab=97.99  E-value=0.0002  Score=59.56  Aligned_cols=115  Identities=21%  Similarity=0.304  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCCCEEEEecc---C-HHHHHHHHHcC-CcEEEeec-cCcCCC-CCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         53 WSDVTWLKTITKLPIVLKGIL---T-AEDAKIGVEMG-ASAIMVSN-HGGRQL-DYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~---~-~~~a~~l~~aG-~d~I~v~~-~gg~~~-~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      .+.++++++. +.  .+....   + .+.++...+.| +|+|.+.. +.|+.. ...+...+.+.++++.. .++||.+.
T Consensus       105 ~~~~~~i~~~-g~--~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~  180 (229)
T PLN02334        105 HRLIQQIKSA-GM--KAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVD  180 (229)
T ss_pred             HHHHHHHHHC-CC--eEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEe
Confidence            4566666643 33  333332   3 45566666664 99997643 222221 12233455566666543 35899999


Q ss_pred             cCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780        126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL  178 (202)
Q Consensus       126 GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m  178 (202)
                      ||| +.+++.+...+|||.+.+||+++.      .+...+.++.+++.++..|
T Consensus       181 GGI-~~e~i~~l~~aGad~vvvgsai~~------~~d~~~~~~~l~~~~~~~~  226 (229)
T PLN02334        181 GGV-GPSTIDKAAEAGANVIVAGSAVFG------APDYAEVISGLRASVEKAA  226 (229)
T ss_pred             CCC-CHHHHHHHHHcCCCEEEEChHHhC------CCCHHHHHHHHHHHHHHhh
Confidence            999 789999999999999999999763      2234455666666666553

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.96  E-value=0.0001  Score=58.60  Aligned_cols=97  Identities=27%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec---c-CHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI---L-TAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~---~-~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      +++...+.++++++.+  ++|++++..   . +++..    +.+.+.|+++|..+....    .+..++..+.++++.++
T Consensus        95 ~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~  170 (201)
T cd00945          95 DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVG  170 (201)
T ss_pred             CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcc
Confidence            3566778888888884  899999976   2 44443    345689999999865211    12235566677766664


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .++|+++.||+.+.+++..++.+||+++.+|
T Consensus       171 ~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         171 GRVGVKAAGGIKTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence            4689999999999999999999999999875

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.94  E-value=0.00016  Score=61.99  Aligned_cols=90  Identities=19%  Similarity=0.154  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.++.+|+..+-..++.. +.+.++++.+.+.|+|+|-+.+          ...+.+.++++.++.++|+.++||| +
T Consensus       174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t  242 (277)
T PRK08072        174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-T  242 (277)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-C
Confidence            44577888887653334443 4789999999999999998843          2345667766666556889999999 8


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.+.+..+.|+|.+.+|++..
T Consensus       243 ~~ni~~~a~~Gvd~IAvg~l~~  264 (277)
T PRK08072        243 LENLPAYGGTGVDYISLGFLTH  264 (277)
T ss_pred             HHHHHHHHHcCCCEEEEChhhc
Confidence            8999999999999999998654

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=97.94  E-value=0.00024  Score=60.95  Aligned_cols=85  Identities=18%  Similarity=0.123  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.|++|++.+++||+.|.... ..+++.+.++|+|.|+-+..-       .|.-+.+..+++.+  ++|+++  |++|
T Consensus        62 ~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~fma--d~~~  130 (293)
T PRK04180         62 DPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVPFVC--GARN  130 (293)
T ss_pred             CHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCCEEc--cCCC
Confidence            45689999999999999998754 789999999999999632211       12224455555555  677777  8999


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      .+++..++.+|||+|.-
T Consensus       131 l~EAlrai~~GadmI~T  147 (293)
T PRK04180        131 LGEALRRIAEGAAMIRT  147 (293)
T ss_pred             HHHHHHHHHCCCCeeec
Confidence            99999999999998864

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=97.94  E-value=0.00021  Score=61.24  Aligned_cols=87  Identities=22%  Similarity=0.311  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCC
Q psy16780         53 WSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGV  128 (202)
Q Consensus        53 ~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI  128 (202)
                      .+.++.+|+..+ .++.+ .+.+.+++..+.++|+|+|-+++-.       +   ..+.++.+.+   ..++|++++|||
T Consensus       171 ~~av~~~R~~~~~~~IgV-ev~t~eea~~A~~~gaD~I~ld~~~-------p---~~l~~~~~~~~~~~~~i~i~AsGGI  239 (272)
T cd01573         171 LKALARLRATAPEKKIVV-EVDSLEEALAAAEAGADILQLDKFS-------P---EELAELVPKLRSLAPPVLLAAAGGI  239 (272)
T ss_pred             HHHHHHHHHhCCCCeEEE-EcCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHhccCCCceEEEECCC
Confidence            457777777653 22222 4578999999999999999986531       1   1222332222   236999999999


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                       +.+.+.+....|+|++.+++.+
T Consensus       240 -~~~ni~~~~~~Gvd~I~vsai~  261 (272)
T cd01573         240 -NIENAAAYAAAGADILVTSAPY  261 (272)
T ss_pred             -CHHHHHHHHHcCCcEEEEChhh
Confidence             8899999999999999777653

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=97.94  E-value=0.00014  Score=62.11  Aligned_cols=87  Identities=25%  Similarity=0.266  Sum_probs=67.7

Q ss_pred             HHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      ..++.+|+..+  .++.+ .+.+.++++.+.++|+|+|-+++-          ..+.+.++.+.++.++|+.++||| +.
T Consensus       170 ~~v~~~r~~~~~~~~Igv-ev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~  237 (268)
T cd01572         170 EAVRRARAAAPFTLKIEV-EVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TL  237 (268)
T ss_pred             HHHHHHHHhCCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CH
Confidence            46778888764  23322 457899999999999999999653          245666666655446999999999 68


Q ss_pred             HHHHHHHHhCCCEEEEcHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.+.+..+.|+|++.+++...
T Consensus       238 ~ni~~~a~~Gvd~Iav~sl~~  258 (268)
T cd01572         238 ENIRAYAETGVDYISVGALTH  258 (268)
T ss_pred             HHHHHHHHcCCCEEEEEeeec
Confidence            999999999999999998654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=97.92  E-value=0.00011  Score=61.09  Aligned_cols=98  Identities=29%  Similarity=0.360  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEeec---------c------------CcCCC------------
Q psy16780         54 SDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVSN---------H------------GGRQL------------   99 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~~---------~------------gg~~~------------   99 (202)
                      +.|++|.+.+.+||..|.+. ..-+|+.+...|+|+|+=|-         |            |.+++            
T Consensus        67 ~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAa  146 (296)
T COG0214          67 KMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAA  146 (296)
T ss_pred             HHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHH
Confidence            37888888999999999874 56788999999999998541         0            11110            


Q ss_pred             ----CC--c------------------------------------cchHHHHHHHHHHhCCCcEE--EEecCCCCHHHHH
Q psy16780        100 ----DY--V------------------------------------PASIEALPEIAKAVGHKVDV--YLDGGVRYGTDVF  135 (202)
Q Consensus       100 ----~~--~------------------------------------~~~~~~l~~i~~~~~~~ipi--ia~GGI~~~~D~~  135 (202)
                          .+  +                                    ..+.+.+.++++.  +++||  ++.|||.|+.|+.
T Consensus       147 MIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPADAA  224 (296)
T COG0214         147 MIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPADAA  224 (296)
T ss_pred             HHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhHHH
Confidence                00  0                                    0112222333221  36666  5699999999999


Q ss_pred             HHHHhCCCEEEEcHHHHH
Q psy16780        136 KALALGAKMVFVGRPALW  153 (202)
Q Consensus       136 kal~~GAd~V~ig~~~l~  153 (202)
                      -.+.+|||+|.+||.+++
T Consensus       225 LMM~LGadGVFVGSGIFK  242 (296)
T COG0214         225 LMMQLGADGVFVGSGIFK  242 (296)
T ss_pred             HHHHhCCCeEEecccccC
Confidence            999999999999998765

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=97.91  E-value=0.00013  Score=58.31  Aligned_cols=82  Identities=23%  Similarity=0.270  Sum_probs=59.2

Q ss_pred             EEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         67 IVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        67 v~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                      .++..+ -+.++++.+.+.|+|++.++.-..|.-  +..+..++.+.++++..  ++||++-||| +.+++.++..+||+
T Consensus        96 ~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~  172 (180)
T PF02581_consen   96 KIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGAD  172 (180)
T ss_dssp             SEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-S
T ss_pred             eEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCC
Confidence            344444 678889999999999999975322211  11234567788887777  7999999999 78999999999999


Q ss_pred             EEEEcHHH
Q psy16780        144 MVFVGRPA  151 (202)
Q Consensus       144 ~V~ig~~~  151 (202)
                      +|.+-|++
T Consensus       173 gvAvi~aI  180 (180)
T PF02581_consen  173 GVAVISAI  180 (180)
T ss_dssp             EEEESHHH
T ss_pred             EEEEEeeC
Confidence            99998763

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.91  E-value=0.00021  Score=59.16  Aligned_cols=76  Identities=33%  Similarity=0.398  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+..-.+. ..+...+.+.+.++++.+  .+|+...|||++.+|+.+++.+||+.|.+|+..+.
T Consensus        31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~  106 (230)
T TIGR00007        31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE  106 (230)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence            46688889999999988653322 122344677788887766  79999999999999999999999999999987764

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=97.90  E-value=0.00048  Score=58.92  Aligned_cols=85  Identities=18%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.|++|++.+++||+-+.... ..+++.+.++|+|.|.-+...       .|..+.+..++..+  ++|+++  +++|
T Consensus        53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~MA--D~st  121 (283)
T cd04727          53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFVC--GARN  121 (283)
T ss_pred             CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEEc--cCCC
Confidence            57799999999999999776543 788999999999999532211       12334556666555  677776  8999


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      .+++..+..+|||+|.-
T Consensus       122 leEal~a~~~Gad~I~T  138 (283)
T cd04727         122 LGEALRRISEGAAMIRT  138 (283)
T ss_pred             HHHHHHHHHCCCCEEEe
Confidence            99999999999998853

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.89  E-value=0.00024  Score=60.95  Aligned_cols=88  Identities=19%  Similarity=0.283  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh-----CCCcEEEEec
Q psy16780         53 WSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV-----GHKVDVYLDG  126 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipiia~G  126 (202)
                      .+.++.+|+.. ..+|.| ++.+.+++..+.++|+|.|.++|.          +.+.+.++.+.+     ++++.+.+||
T Consensus       170 ~~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSG  238 (278)
T PRK08385        170 EEAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSG  238 (278)
T ss_pred             HHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEEC
Confidence            45677777754 355555 678999999999999999999774          233333433322     2478999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      || +.+.+.+...+|+|.+.+|++..
T Consensus       239 GI-~~~ni~~yA~tGvD~Is~galt~  263 (278)
T PRK08385        239 GI-TPENIEEYAKLDVDVISLGALTH  263 (278)
T ss_pred             CC-CHHHHHHHHHcCCCEEEeChhhc
Confidence            99 89999999999999999998764

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.89  E-value=7.2e-05  Score=62.39  Aligned_cols=73  Identities=23%  Similarity=0.345  Sum_probs=57.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.++.+.+. ++.+.+....|+ ..+.+++.+.+.++.+..  .+||+++|||+|.+|+.+++.+||+.|.+|++.+
T Consensus        34 ~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~  106 (228)
T PRK04128         34 EIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF  106 (228)
T ss_pred             HHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence            556777776 888877443222 123346788888887765  7999999999999999999999999999999755

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.87  E-value=0.00023  Score=60.35  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+..-.+. .....++.+.+.++.+..  .+||++.|||++.+|+.+++.+|++.|.+|+..+.
T Consensus        33 ~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~  108 (258)
T PRK01033         33 INAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE  108 (258)
T ss_pred             HHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence            46689999999999988653211 112346778888887765  79999999999999999999999999999998763

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=97.87  E-value=0.00026  Score=59.88  Aligned_cols=89  Identities=24%  Similarity=0.403  Sum_probs=62.4

Q ss_pred             HHHHHHHHh---cCCCEEEEec--------cCHH---H-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         54 SDVTWLKTI---TKLPIVLKGI--------LTAE---D-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        54 ~~i~~i~~~---~~~Pv~vK~~--------~~~~---~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +.++++++.   +++|+++...        .+.+   . ++.+.++|+|+|.++..         ...+.+.++.+..  
T Consensus       123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--  191 (258)
T TIGR01949       123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--  191 (258)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--
Confidence            456666654   5899888432        1222   2 46678899999987521         2456677776654  


Q ss_pred             CcEEEEecCCC--CHHHHH----HHHHhCCCEEEEcHHHHH
Q psy16780        119 KVDVYLDGGVR--YGTDVF----KALALGAKMVFVGRPALW  153 (202)
Q Consensus       119 ~ipiia~GGI~--~~~D~~----kal~~GAd~V~ig~~~l~  153 (202)
                      ++||++.|||+  +.+++.    +++.+||+++.+||.++.
T Consensus       192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~  232 (258)
T TIGR01949       192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ  232 (258)
T ss_pred             CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence            79999999999  655554    445899999999999885

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=97.85  E-value=0.00016  Score=58.56  Aligned_cols=89  Identities=20%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             cHHHHHHHHHhcCCCEE--EEec---------cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         52 NWSDVTWLKTITKLPIV--LKGI---------LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~--vK~~---------~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ..+.|+.||+.+++|||  +|-.         .+.++++.+.++|+|.|-++.+.....   .+-.+.+.++++..   .
T Consensus        20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~   93 (192)
T PF04131_consen   20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---Q   93 (192)
T ss_dssp             SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---S
T ss_pred             CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---c
Confidence            56899999999999997  4421         467999999999999999987543211   22233456665532   4


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      ++++  .+.|.+|+..+..+|+|+|.-.
T Consensus        94 l~MA--Dist~ee~~~A~~~G~D~I~TT  119 (192)
T PF04131_consen   94 LVMA--DISTLEEAINAAELGFDIIGTT  119 (192)
T ss_dssp             EEEE--E-SSHHHHHHHHHTT-SEEE-T
T ss_pred             EEee--ecCCHHHHHHHHHcCCCEEEcc
Confidence            5555  6899999999999999998643

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=97.84  E-value=9.4e-05  Score=62.71  Aligned_cols=97  Identities=27%  Similarity=0.306  Sum_probs=68.4

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH-----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGI-----LTAED-----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~-----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      ..+|-+...+.|+++++.++-++.+|.+     ++.++     .+.+.++|+|+|.-|.+.+    .+..+.+.++-+++
T Consensus       110 k~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~  185 (257)
T PRK05283        110 MAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLE  185 (257)
T ss_pred             hCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHH
Confidence            3567777788899999876535778876     34332     3567899999999865321    12345555554444


Q ss_pred             Hh-----CCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780        115 AV-----GHKVDVYLDGGVRYGTDVFKALALGAKMV  145 (202)
Q Consensus       115 ~~-----~~~ipiia~GGI~~~~D~~kal~~GAd~V  145 (202)
                      .+     ++++.|=++|||||.+++.+++.+|.+..
T Consensus       186 ~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l  221 (257)
T PRK05283        186 VIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEIL  221 (257)
T ss_pred             HHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHh
Confidence            44     35799999999999999999999986643

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.84  E-value=0.00023  Score=59.59  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=60.1

Q ss_pred             CH-HHHHHHHH-cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780         74 TA-EDAKIGVE-MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus        74 ~~-~~a~~l~~-aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      ++ +.|+...+ .|+|.+.+.--.+. ..+.+.+.+.+.++++.+  .+||...|||||.+|+.+++.+||+-|.+|+..
T Consensus        32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a  108 (234)
T PRK13587         32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG  108 (234)
T ss_pred             CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence            44 67788888 69999887543221 123356778888888766  799999999999999999999999999999976


Q ss_pred             H
Q psy16780        152 L  152 (202)
Q Consensus       152 l  152 (202)
                      +
T Consensus       109 ~  109 (234)
T PRK13587        109 I  109 (234)
T ss_pred             h
Confidence            5

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=97.84  E-value=0.00063  Score=56.19  Aligned_cols=95  Identities=21%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             HHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCC--CccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         56 VTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +...++..+-..+++.+ .+.+++..+.+.|+|+|-++.-..|.-.  ..+..++.+..+++..  .+|+++-||| +.+
T Consensus        94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~  170 (211)
T COG0352          94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLE  170 (211)
T ss_pred             hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence            34444444444556554 5789999999999999998653333321  2233566777776665  5999999997 678


Q ss_pred             HHHHHHHhCCCEEEEcHHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+...+..||++|.+-|+++.
T Consensus       171 nv~~v~~~Ga~gVAvvsai~~  191 (211)
T COG0352         171 NVPEVLEAGADGVAVVSAITS  191 (211)
T ss_pred             HHHHHHHhCCCeEEehhHhhc
Confidence            899999999999999999985

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.82  E-value=0.00033  Score=58.24  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=72.7

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..++ .++|++- +++|+.++..+.++|++.|.+.-.+    ..+   ...++.++.-+ +.++++.+||
T Consensus        97 sP~~~~~v~~~~~~-~~i~~iP-G~~TpsEi~~A~~~Ga~~vKlFPA~----~~G---~~~ikal~~p~-p~i~~~ptGG  166 (222)
T PRK07114         97 TPLFNPDIAKVCNR-RKVPYSP-GCGSLSEIGYAEELGCEIVKLFPGS----VYG---PGFVKAIKGPM-PWTKIMPTGG  166 (222)
T ss_pred             CCCCCHHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEECccc----ccC---HHHHHHHhccC-CCCeEEeCCC
Confidence            44455557777664 5888875 6899999999999999999996421    112   34455554434 4799999999


Q ss_pred             CCC-HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRY-GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~-~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |.- .+++.+.+.+|+.+|++|+.+..
T Consensus       167 V~~~~~n~~~yl~aGa~avg~Gs~L~~  193 (222)
T PRK07114        167 VEPTEENLKKWFGAGVTCVGMGSKLIP  193 (222)
T ss_pred             CCcchhcHHHHHhCCCEEEEEChhhcC
Confidence            985 58999999999999999998863

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=97.81  E-value=0.00014  Score=59.27  Aligned_cols=96  Identities=20%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhcCCCEEEEecc-CHHH--HHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         53 WSDVTWLKTITKLPIVLKGIL-TAED--AKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~-~~~~--a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .+.++.+++..+.+++..... +...  .......|+|++.+.+......  .+.+.+++.++++.    .++|+++.||
T Consensus        85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaGG  160 (203)
T cd00405          85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAGG  160 (203)
T ss_pred             HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEECC
Confidence            356788887777787733332 2222  2345568999998866322111  22345677776654    3799999999


Q ss_pred             CCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      | +++.+.+++..| +++|.+.|.+..
T Consensus       161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~  186 (203)
T cd00405         161 L-TPDNVAEAIRLVRPYGVDVSSGVET  186 (203)
T ss_pred             C-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence            9 999999999999 999999998763

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.80  E-value=0.00042  Score=59.56  Aligned_cols=89  Identities=16%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             cHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         52 NWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        52 ~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      ..+.++++|+..+  .||.| ++.+.+++..+.++|+|.|-+.|.          +.+.+.++.+.++.+.|+-+|||| 
T Consensus       180 i~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI-  247 (281)
T PRK06106        180 VREAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRI-  247 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCC-
Confidence            3457888888764  55665 678999999999999999999874          345556665666668899999998 


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.+.+.+....|+|.+.+|+...
T Consensus       248 ~~~ni~~yA~tGVD~Is~Galth  270 (281)
T PRK06106        248 TPETAPAIAASGVDLISVGWLTH  270 (281)
T ss_pred             CHHHHHHHHhcCCCEEEeChhhc
Confidence            56888888889999999998653

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.80  E-value=0.00042  Score=56.91  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=72.5

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..+ ..++|++- ++.|+.++..+.++|+|.|.+.-.+  . -++   ...++.++.-+ +.+|++.+||
T Consensus        86 sP~~~~~v~~~~~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~--~-~GG---~~yikal~~pl-p~i~~~ptGG  156 (204)
T TIGR01182        86 SPGLTPELAKHAQ-DHGIPIIP-GVATPSEIMLALELGITALKLFPAE--V-SGG---VKMLKALAGPF-PQVRFCPTGG  156 (204)
T ss_pred             CCCCCHHHHHHHH-HcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch--h-cCC---HHHHHHHhccC-CCCcEEecCC
Confidence            3444556777766 45888886 7899999999999999999995421  0 111   23445554444 4799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |.- +++.+.+++|+.+|++|+.+..
T Consensus       157 V~~-~N~~~~l~aGa~~vg~Gs~L~~  181 (204)
T TIGR01182       157 INL-ANVRDYLAAPNVACGGGSWLVP  181 (204)
T ss_pred             CCH-HHHHHHHhCCCEEEEEChhhcC
Confidence            866 8999999999999999998874

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=97.79  E-value=0.00031  Score=60.13  Aligned_cols=85  Identities=18%  Similarity=0.110  Sum_probs=65.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.|++|++.+++||+-|.... ..+++.+.++|+|.|+-+...       .|.-+.+..++..+  ++|+++  |++|
T Consensus        55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfma--d~~~  123 (287)
T TIGR00343        55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFVC--GARD  123 (287)
T ss_pred             CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEEc--cCCC
Confidence            56699999999999999887644 789999999999999633211       22333455555555  677776  8999


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      .+++..++..|||+|.-
T Consensus       124 l~EAlrai~~GadmI~T  140 (287)
T TIGR00343       124 LGEALRRINEGAAMIRT  140 (287)
T ss_pred             HHHHHHHHHCCCCEEec
Confidence            99999999999998753

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=97.78  E-value=9.7e-05  Score=61.58  Aligned_cols=100  Identities=24%  Similarity=0.308  Sum_probs=65.0

Q ss_pred             ccccHHHHHHHHHhc---CCCEEEEeccCHH-------------HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         49 ETINWSDVTWLKTIT---KLPIVLKGILTAE-------------DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~---~~Pv~vK~~~~~~-------------~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      -+...+.++++++.+   ++|+++=..++.+             .++.+.++|+|+|..+..+.  ......+.+.+.++
T Consensus       107 ~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~  184 (236)
T PF01791_consen  107 EDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKA  184 (236)
T ss_dssp             HHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHH
Confidence            334556677777665   7788876333322             24677899999999976411  11112233344444


Q ss_pred             HHHhCCCcE----EEEecCC------CCHHHHHHHHHhCC--CEEEEcHHHH
Q psy16780        113 AKAVGHKVD----VYLDGGV------RYGTDVFKALALGA--KMVFVGRPAL  152 (202)
Q Consensus       113 ~~~~~~~ip----iia~GGI------~~~~D~~kal~~GA--d~V~ig~~~l  152 (202)
                      .+..  .+|    |.++||+      ++.+++.+++.+||  .++..||.+.
T Consensus       185 ~~~~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~  234 (236)
T PF01791_consen  185 VEAA--PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW  234 (236)
T ss_dssp             HHTH--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred             HHhc--CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            4433  455    9999999      99999999999999  7777887654

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=97.77  E-value=0.00058  Score=58.33  Aligned_cols=87  Identities=24%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC--CcEEEEecCCC
Q psy16780         54 SDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH--KVDVYLDGGVR  129 (202)
Q Consensus        54 ~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipiia~GGI~  129 (202)
                      ..++++|+..+  .++.+ .+.+.+++..+.++|+|+|-+++.          ..+.+.++.+.++.  ++|+.++|||.
T Consensus       169 ~~v~~~r~~~~~~~~I~v-ev~t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt  237 (269)
T cd01568         169 EAVKRARAAAPFEKKIEV-EVETLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGIT  237 (269)
T ss_pred             HHHHHHHHhCCCCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCCC
Confidence            46788888764  33333 457899999999999999999663          22344444443333  79999999984


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                       .+.+.+..++|||++.+|+.+.
T Consensus       238 -~~ni~~~a~~Gad~Isvgal~~  259 (269)
T cd01568         238 -LENIRAYAETGVDVISTGALTH  259 (269)
T ss_pred             -HHHHHHHHHcCCCEEEEcHHHc
Confidence             7889999999999999976543

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.75  E-value=0.00016  Score=61.17  Aligned_cols=69  Identities=23%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|++.+++---       +.++.+.+.++.+.+  .+||...||||+ +++.+++.+||+.|.+|+.++.
T Consensus        41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~  109 (253)
T TIGR02129        41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT  109 (253)
T ss_pred             HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence            58899999999999987543       233778888888876  799999999998 9999999999999999998764

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=97.74  E-value=0.00035  Score=58.50  Aligned_cols=65  Identities=23%  Similarity=0.365  Sum_probs=51.6

Q ss_pred             cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc-EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV-DVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        84 aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .|...+.+..+++.   +.+.+.+.+..+++.+  +. |++..|||++.+++.+++..|||.|.+|+.+..
T Consensus       153 ~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~  218 (232)
T PRK04169        153 LGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE  218 (232)
T ss_pred             cCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence            46666666543322   3456778888888776  56 999999999999999999999999999999985

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.74  E-value=0.00024  Score=59.15  Aligned_cols=76  Identities=29%  Similarity=0.336  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|++.+.+..-.+. ..+.+.+.+.+.++++.+  .+|+...||||+.+|+.+++.+||+-|.+|+..+.
T Consensus        32 ~~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~  107 (229)
T PF00977_consen   32 VEVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE  107 (229)
T ss_dssp             HHHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence            47788888999999887542111 123355777888888877  69999999999999999999999999999998775

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.73  E-value=0.00055  Score=59.05  Aligned_cols=88  Identities=15%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++++|+..+  .+|.| ++.+.++++.+.++|+|.|-+.|.          +.+.+.++.+.++.++.+.+|||| +
T Consensus       184 ~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~  251 (290)
T PRK06559        184 QKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-D  251 (290)
T ss_pred             HHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-C
Confidence            457888887764  45555 568999999999999999999874          345556665556668899999998 5


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.+.+...+|+|.+.+|++..
T Consensus       252 ~~ni~~yA~tGVD~Is~galth  273 (290)
T PRK06559        252 MTTISRFRGLAIDYVSSGSLTH  273 (290)
T ss_pred             HHHHHHHHhcCCCEEEeCcccc
Confidence            7888888889999999998654

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.69  E-value=0.00041  Score=56.97  Aligned_cols=85  Identities=18%  Similarity=0.225  Sum_probs=63.4

Q ss_pred             CccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         48 DETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      +.....+.|+++++.+ ++.|.++.+++.++++.+.++|+++++- -+         .+.+.+..+ +..  ++|.+-  
T Consensus        42 ~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs-P~---------~~~~v~~~~-~~~--~i~~iP--  106 (204)
T TIGR01182        42 RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS-PG---------LTPELAKHA-QDH--GIPIIP--  106 (204)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHH-HHc--CCcEEC--
Confidence            3344577899999877 4667777789999999999999999943 21         122333333 333  677777  


Q ss_pred             CCCCHHHHHHHHHhCCCEEEE
Q psy16780        127 GVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~i  147 (202)
                      |+.|+.++.+|+.+||+.|=+
T Consensus       107 G~~TptEi~~A~~~Ga~~vKl  127 (204)
T TIGR01182       107 GVATPSEIMLALELGITALKL  127 (204)
T ss_pred             CCCCHHHHHHHHHCCCCEEEE
Confidence            999999999999999998754

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=97.67  E-value=0.0011  Score=61.15  Aligned_cols=93  Identities=18%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             HHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780         58 WLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV  134 (202)
Q Consensus        58 ~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~  134 (202)
                      ..|+..+-..+++.+ .+.++++.+.+.|+|+|.++--..+.-  +..+..++.++++++..  ++||++-|||. .+++
T Consensus       382 ~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~~  458 (502)
T PLN02898        382 LARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASNA  458 (502)
T ss_pred             HHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHHH
Confidence            334433333445544 577889999999999998754211111  11223466677776554  79999999995 8999


Q ss_pred             HHHHHhCCC---EEEEcHHHHH
Q psy16780        135 FKALALGAK---MVFVGRPALW  153 (202)
Q Consensus       135 ~kal~~GAd---~V~ig~~~l~  153 (202)
                      .+++++||+   +|.+++.+..
T Consensus       459 ~~~~~~G~~~~~gvav~~~i~~  480 (502)
T PLN02898        459 ASVMESGAPNLKGVAVVSALFD  480 (502)
T ss_pred             HHHHHcCCCcCceEEEEeHHhc
Confidence            999999999   9999999874

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.67  E-value=0.00029  Score=58.80  Aligned_cols=74  Identities=26%  Similarity=0.310  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...+.|+|.+.+..-.+.  .+...+.+.+.++.+.+  .+|+...||||+.+|+.+++.+||+-|.+|+..+
T Consensus        38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~  111 (233)
T cd04723          38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL  111 (233)
T ss_pred             HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence            47789999999999988653322  23456777888887766  6999999999999999999999999999999654

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.66  E-value=0.00078  Score=57.89  Aligned_cols=89  Identities=17%  Similarity=0.153  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         52 NWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        52 ~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      ..+.++++|+..+  .+|.| ++.+.+++..+.++|+|.|-+.|.          +.+.+.++.+.++++..+.+|||| 
T Consensus       179 i~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI-  246 (281)
T PRK06543        179 LTEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV-  246 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-
Confidence            4457888887764  45655 678999999999999999999874          344555555556667889999997 


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.+.+.+....|+|.+.+|+...
T Consensus       247 ~~~ni~~yA~tGVD~Is~galth  269 (281)
T PRK06543        247 NLNTVGAIASTGVDVISVGALTH  269 (281)
T ss_pred             CHHHHHHHHhcCCCEEEeCcccc
Confidence            67888888889999999998543

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.66  E-value=0.0018  Score=53.38  Aligned_cols=84  Identities=14%  Similarity=0.065  Sum_probs=60.6

Q ss_pred             EEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCC---CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         68 VLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLD---YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        68 ~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                      ++..+ -+.+++..+.+.|+|++.++--..|.-.   ..+..++.+.++.+.. .++||++-|||. .+++.++++.||+
T Consensus       104 ~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~  181 (211)
T PRK03512        104 RLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVG  181 (211)
T ss_pred             EEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCC
Confidence            44443 5778888899999999998753222111   1123455566655442 269999999986 7999999999999


Q ss_pred             EEEEcHHHHH
Q psy16780        144 MVFVGRPALW  153 (202)
Q Consensus       144 ~V~ig~~~l~  153 (202)
                      +|.+-+.+..
T Consensus       182 GiAvisai~~  191 (211)
T PRK03512        182 SIAVVSAITQ  191 (211)
T ss_pred             EEEEhhHhhC
Confidence            9999999874

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=97.65  E-value=0.00045  Score=57.45  Aligned_cols=76  Identities=24%  Similarity=0.246  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|+|-+++-.-.. ..++..+..+.+.++++.+  -+|+..-|||++.+|+.+.|.+|||=|.+.|+-+.
T Consensus        33 VelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~  108 (256)
T COG0107          33 VELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK  108 (256)
T ss_pred             HHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence            5889999999999987632110 1122345677888888877  79999999999999999999999999999998764

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=97.64  E-value=0.0019  Score=53.26  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~  129 (202)
                      .+.++.+++. ++++-+-.+.+.+++..+.++|+++|..  .-||--+.+......+.++.+.+   +-+..|++ .|++
T Consensus        91 l~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r  166 (211)
T cd00956          91 LKAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIR  166 (211)
T ss_pred             HHHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccC
Confidence            3455555544 7888888889999999999999999654  44443333444455555554433   21344444 5699


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHHHhhh
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALWGLAH  157 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~~~~~  157 (202)
                      ++.++..++.+|||.|-+.-.++..+..
T Consensus       167 ~~~ei~~a~~~Gad~vTv~~~vl~~l~~  194 (211)
T cd00956         167 NPQHVIEAALAGADAITLPPDVLEQLLK  194 (211)
T ss_pred             CHHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence            9999999999999999999988876543

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=97.61  E-value=0.0016  Score=59.02  Aligned_cols=80  Identities=14%  Similarity=0.036  Sum_probs=59.0

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCC---CCccchHHHHHHHHHHhC-------CCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQL---DYVPASIEALPEIAKAVG-------HKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~---~~~~~~~~~l~~i~~~~~-------~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                      -+.+++.++.+.|+|+|.++----|.-   ...+..++.+.++++.+.       ..+|+++-||| +.+++.++++.||
T Consensus       308 Hs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa  386 (437)
T PRK12290        308 HGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGV  386 (437)
T ss_pred             CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCC
Confidence            357788888899999998864221211   122335566666555442       26999999999 8899999999999


Q ss_pred             CEEEEcHHHHH
Q psy16780        143 KMVFVGRPALW  153 (202)
Q Consensus       143 d~V~ig~~~l~  153 (202)
                      ++|.+-|++..
T Consensus       387 ~GVAVVSAI~~  397 (437)
T PRK12290        387 SSLAVVRAITL  397 (437)
T ss_pred             CEEEEehHhhc
Confidence            99999999874

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=97.61  E-value=0.0019  Score=53.78  Aligned_cols=123  Identities=13%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             ccCccc--cHHHHHHHHHhc-CCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCcCC-C--------------------
Q psy16780         46 QLDETI--NWSDVTWLKTIT-KLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGGRQ-L--------------------   99 (202)
Q Consensus        46 ~~d~~~--~~~~i~~i~~~~-~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg~~-~--------------------   99 (202)
                      .+-|++  ..+.++++|+.+ ++|+-+|+- .++ ..++.+.++|+|.++++.-.+.. +                    
T Consensus        44 ~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p  123 (228)
T PTZ00170         44 HFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKP  123 (228)
T ss_pred             ccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECC
Confidence            444554  467999999987 899999975 555 44688899999999997432211 0                    


Q ss_pred             ----------------C-----------Ccc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        100 ----------------D-----------YVP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       100 ----------------~-----------~~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                                      +           .+.    ...+-+.++++.. +...|..+|||+. +.+.++..+|||.+.+|
T Consensus       124 ~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~~-~ti~~~~~aGad~iVvG  201 (228)
T PTZ00170        124 KTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY-PHLNIQVDGGINL-ETIDIAADAGANVIVAG  201 (228)
T ss_pred             CCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc-ccCeEEECCCCCH-HHHHHHHHcCCCEEEEc
Confidence                            0           001    1122233343333 2478999999976 67888889999999999


Q ss_pred             HHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        149 RPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       149 ~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      |++..+      +...+.++.+++.++.
T Consensus       202 saI~~a------~d~~~~~~~i~~~~~~  223 (228)
T PTZ00170        202 SSIFKA------KDRKQAIELLRESVQK  223 (228)
T ss_pred             hHHhCC------CCHHHHHHHHHHHHHH
Confidence            997531      2233455555555443

>KOG1606|consensus

Probab=97.60  E-value=0.00076  Score=55.51  Aligned_cols=39  Identities=21%  Similarity=0.212  Sum_probs=32.7

Q ss_pred             HHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEee
Q psy16780         54 SDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVS   92 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~   92 (202)
                      ..|++|++.+.+||..|.+. ..-+++.+...|+|+|+=|
T Consensus        68 ~mIKei~~aVsiPVMAk~RiGHFVEAQIlE~l~vDYiDES  107 (296)
T KOG1606|consen   68 RMIKEIKNAVSIPVMAKVRIGHFVEAQILEALGVDYIDES  107 (296)
T ss_pred             HHHHHHHHhccchhhhhhhhhhhhHHHHHHHhccCccchh
Confidence            48999999999999999873 4567888899999998743

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=97.57  E-value=0.0012  Score=52.63  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=67.6

Q ss_pred             HhhhccCccccHHHHHHHHHhcC-CC-EEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHH-HHHHHHHhCC
Q psy16780         42 YITSQLDETINWSDVTWLKTITK-LP-IVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA-LPEIAKAVGH  118 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~-~P-v~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~-l~~i~~~~~~  118 (202)
                      |+.-.|+   ..+.++++++..+ .+ |.| ++.+.++++.+.++|+|.|.+.+..       +.++.. +..+ +...+
T Consensus        59 Hi~~~g~---i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~-------~~~~~~~v~~l-~~~~~  126 (169)
T PF01729_consen   59 HIAFFGG---IEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNMS-------PEDLKEAVEEL-RELNP  126 (169)
T ss_dssp             HHHHHSS---HHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-C-------HHHHHHHHHHH-HHHTT
T ss_pred             HHHHhCC---HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcC-------HHHHHHHHHHH-hhcCC
Confidence            4444455   3447777777763 33 555 6678999999999999999998742       222222 2222 34566


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ++.|.+|||| +.+.+.+....|+|.+.+|+...
T Consensus       127 ~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~  159 (169)
T PF01729_consen  127 RVKIEASGGI-TLENIAEYAKTGVDVISVGSLTH  159 (169)
T ss_dssp             TSEEEEESSS-STTTHHHHHHTT-SEEEECHHHH
T ss_pred             cEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhc
Confidence            8999999997 56788888899999999998755

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.56  E-value=0.0012  Score=55.30  Aligned_cols=75  Identities=19%  Similarity=0.089  Sum_probs=58.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|++.+.+..-.+.  .+..++.+.+.++.+..  ..|+...|||||.+|+.+++.+||+-|.+||..+.
T Consensus        33 ~~~a~~~~~~ga~~lhivDLd~a--~~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~  107 (232)
T PRK13586         33 IEIASKLYNEGYTRIHVVDLDAA--EGVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT  107 (232)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCc--CCCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence            46788888999999987653332  13345667777776633  25999999999999999999999999999997653

>cd02812 PcrB_like PcrB_like proteins

Probab=97.56  E-value=0.00053  Score=56.93  Aligned_cols=69  Identities=20%  Similarity=0.315  Sum_probs=54.9

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |..+...|...|.+.+ .|.     ..+.+.+..+++.+. ++|++..|||||.+++.+++.+|||.|.+|+.+..
T Consensus       141 A~aae~~g~~ivyLe~-SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~  209 (219)
T cd02812         141 ALAAEYLGMPIVYLEY-SGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE  209 (219)
T ss_pred             HHHHHHcCCeEEEeCC-CCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence            4566778888888862 222     245667777776542 69999999999999999999999999999999874

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=97.54  E-value=0.0014  Score=56.72  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=67.8

Q ss_pred             cHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.++++|+.. ..|+.| ++.+.+++..+.++|+|.|-+.|.          +.+.+.++.+.+++++.+.+|||| +
T Consensus       195 i~~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI-~  262 (296)
T PRK09016        195 IRQAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNV-T  262 (296)
T ss_pred             HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCC-C
Confidence            345677777665 356555 678899999999999999999874          235555555555668999999997 5


Q ss_pred             HHHHHHHHHhCCCEEEEcHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~  151 (202)
                      .+.+.+...+|+|.+.+|++.
T Consensus       263 ~~ni~~yA~tGVD~Is~galt  283 (296)
T PRK09016        263 LETLREFAETGVDFISVGALT  283 (296)
T ss_pred             HHHHHHHHhcCCCEEEeCccc
Confidence            688888888999999999854

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.53  E-value=0.0015  Score=56.41  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH---hCCCcEEEEecCC
Q psy16780         53 WSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA---VGHKVDVYLDGGV  128 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipiia~GGI  128 (202)
                      .+.++++|+.. ..|+.| ++.+.+++..+.++|+|.|-++|..          .+.++++.+.   ..+++.+.+||||
T Consensus       187 ~~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDnm~----------~e~vk~av~~~~~~~~~v~ieaSGGI  255 (289)
T PRK07896        187 VAALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDNFP----------VWQTQEAVQRRDARAPTVLLESSGGL  255 (289)
T ss_pred             HHHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHHhccCCCEEEEEECCC
Confidence            34677777754 356655 6789999999999999999998742          2333333322   3567899999997


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                       +.+.+.+...+|+|.+.+|+...
T Consensus       256 -~~~ni~~yA~tGvD~Is~galt~  278 (289)
T PRK07896        256 -TLDTAAAYAETGVDYLAVGALTH  278 (289)
T ss_pred             -CHHHHHHHHhcCCCEEEeChhhc
Confidence             67888888889999999998664

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=97.53  E-value=0.00072  Score=55.61  Aligned_cols=66  Identities=18%  Similarity=0.323  Sum_probs=52.5

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +..+...|++.|.+....|.   ..+.+.+.+..+++.+  ++|++.-||||+.+++.+++..|||.|.+|
T Consensus       140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence            45567789999988653333   1234567788888877  799999999999999999999999999986

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family

Probab=97.51  E-value=0.0058  Score=50.55  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=.+.+.+++..+.++|+++|..  .-||-.+.+......+.++.+.+   +.+..|++. .+|+..++.++..+
T Consensus       101 Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaA-S~r~~~~v~~~~~~  177 (213)
T TIGR00875       101 GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAA-SVRHPRHVLEAALI  177 (213)
T ss_pred             CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEe-ccCCHHHHHHHHHc
Confidence            6777776678889999999999998876  33443333334455555554433   346776665 59999999999999


Q ss_pred             CCCEEEEcHHHHHHhh
Q psy16780        141 GAKMVFVGRPALWGLA  156 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~  156 (202)
                      |||.|-+.-.++..+.
T Consensus       178 G~d~vTip~~vl~~l~  193 (213)
T TIGR00875       178 GADIATMPLDVMQQLF  193 (213)
T ss_pred             CCCEEEcCHHHHHHHH
Confidence            9999999999887764

This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=97.50  E-value=0.0012  Score=56.14  Aligned_cols=71  Identities=23%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|++.++|---.|    +.+.+.+.+.++++ +  .+||-.-||||+ +++.+++.+||+-|.+||..+.
T Consensus        46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~  116 (262)
T PLN02446         46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR  116 (262)
T ss_pred             HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence            4778999999999988754322    22446777888877 5  699999999996 9999999999999999998774

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=97.49  E-value=0.0022  Score=55.12  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=70.8

Q ss_pred             HhhhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---C
Q psy16780         42 YITSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---G  117 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~  117 (202)
                      |..-.++.+...+.++.+|+.. ..+|.| ++.+.++++.+.++|+|.|.++|.          +.+.+.++.+.+   .
T Consensus       165 Hi~~~g~~~~i~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~  233 (277)
T TIGR01334       165 HRTFLNDNFDWGGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFD  233 (277)
T ss_pred             HHHHhCCcccHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccC
Confidence            3333444344556888888765 345555 567999999999999999999763          223333333333   4


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      +++.+.++||| +.+.+.+...+|+|.+.+|.+.
T Consensus       234 ~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~  266 (277)
T TIGR01334       234 HIPTLAAAGGI-NPENIADYIEAGIDLFITSAPY  266 (277)
T ss_pred             CCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence            57889999997 6788988889999999999874

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.46  E-value=0.0013  Score=54.43  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             ccccHHHHHHHHHhcC----CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         49 ETINWSDVTWLKTITK----LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~----~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      .....+.|+++++.++    +.|.++.+++.++++.+.++|+++++- -  +       .+.+.+... +..  ++|++-
T Consensus        48 ~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P--~-------~~~~v~~~~-~~~--~i~~iP  114 (213)
T PRK06552         48 NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-P--S-------FNRETAKIC-NLY--QIPYLP  114 (213)
T ss_pred             CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-C--C-------CCHHHHHHH-HHc--CCCEEC
Confidence            3445678999998773    445566679999999999999999973 1  1       122333333 333  677776


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                        |..|+.++.+++.+|||.|.+
T Consensus       115 --G~~T~~E~~~A~~~Gad~vkl  135 (213)
T PRK06552        115 --GCMTVTEIVTALEAGSEIVKL  135 (213)
T ss_pred             --CcCCHHHHHHHHHcCCCEEEE
Confidence              899999999999999999998

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=97.45  E-value=0.00079  Score=56.24  Aligned_cols=65  Identities=20%  Similarity=0.322  Sum_probs=43.9

Q ss_pred             cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        84 aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .|...+-+-.+.|+.   ++++ ..+.++++.+ .++|+|..|||||.+++.+++.+|||.|.+|+.|..
T Consensus       152 ~g~~~iYLEaGSGa~---~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee  216 (230)
T PF01884_consen  152 LGMPIIYLEAGSGAY---GPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE  216 (230)
T ss_dssp             TT-SEEEEE--TTSS---S-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred             hCCCEEEEEeCCCCC---CCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence            567777765433321   1222 3344445554 489999999999999999999999999999999975

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=97.45  E-value=0.0006  Score=55.67  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..++ .++|++- ++.|+.++..+.++|++.|.+.-.+  . -+|   ...++.++.-+ ++++++.+||
T Consensus        86 SP~~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~G~~~vK~FPA~--~-~GG---~~~ik~l~~p~-p~~~~~ptGG  156 (196)
T PF01081_consen   86 SPGFDPEVIEYARE-YGIPYIP-GVMTPTEIMQALEAGADIVKLFPAG--A-LGG---PSYIKALRGPF-PDLPFMPTGG  156 (196)
T ss_dssp             ESS--HHHHHHHHH-HTSEEEE-EESSHHHHHHHHHTT-SEEEETTTT--T-TTH---HHHHHHHHTTT-TT-EEEEBSS
T ss_pred             CCCCCHHHHHHHHH-cCCcccC-CcCCHHHHHHHHHCCCCEEEEecch--h-cCc---HHHHHHHhccC-CCCeEEEcCC
Confidence            45555667777764 4888875 6899999999999999999995421  1 111   34455554434 4799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |.- +++.+.+.+|+.+|++|+.+..
T Consensus       157 V~~-~N~~~~l~ag~~~vg~Gs~L~~  181 (196)
T PF01081_consen  157 VNP-DNLAEYLKAGAVAVGGGSWLFP  181 (196)
T ss_dssp             --T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred             CCH-HHHHHHHhCCCEEEEECchhcC
Confidence            976 7899999999999999998774

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=97.44  E-value=0.0069  Score=52.15  Aligned_cols=109  Identities=18%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             cCHHHHHHHH-HcCCcEEEee--ccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec--CCCCHHHHHHHHHhCCCEEEE
Q psy16780         73 LTAEDAKIGV-EMGASAIMVS--NHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG--GVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~--~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G--GI~~~~D~~kal~~GAd~V~i  147 (202)
                      .++++++.+. +.|+|++-++  +-.|+........++.|+++++.+  ++|+++-|  || +.+++.+++..|++.|.+
T Consensus       153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv  229 (281)
T PRK06806        153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGI-SPEDFKKCIQHGIRKINV  229 (281)
T ss_pred             CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCC-CHHHHHHHHHcCCcEEEE
Confidence            3688888887 4699999994  322332222234778899998877  79999999  76 458899999999999999


Q ss_pred             cHHHHHHhh-------hcCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        148 GRPALWGLA-------HSGK-----SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       148 g~~~l~~~~-------~~G~-----~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      .|.+.....       ...+     +-.....+.+++..+..|..+|..
T Consensus       230 ~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~  278 (281)
T PRK06806        230 ATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE  278 (281)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            998775311       0110     112333345566666666666643

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.43  E-value=0.0024  Score=55.20  Aligned_cols=87  Identities=14%  Similarity=0.254  Sum_probs=65.6

Q ss_pred             HHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         54 SDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +.++++|+.. ..+|.| ++.+.++++.+.++|+|.|-+.|.          +.+.+.++.+.+++++.+-+|||| +.+
T Consensus       194 ~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~  261 (294)
T PRK06978        194 AALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFD  261 (294)
T ss_pred             HHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHH
Confidence            3566666543 244444 568899999999999999999874          344555555555567899999998 578


Q ss_pred             HHHHHHHhCCCEEEEcHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.+...+|+|.+.+|+...
T Consensus       262 ni~~yA~tGVD~IS~galth  281 (294)
T PRK06978        262 TVRAFAETGVDRISIGALTK  281 (294)
T ss_pred             HHHHHHhcCCCEEEeCcccc
Confidence            88888889999999998543

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=97.43  E-value=0.0071  Score=50.34  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             ccCccc--cHHHHHHHHHh-cCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc---------------C---------c
Q psy16780         46 QLDETI--NWSDVTWLKTI-TKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH---------------G---------G   96 (202)
Q Consensus        46 ~~d~~~--~~~~i~~i~~~-~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~---------------g---------g   96 (202)
                      .+=|++  ..+.++++|+. ++.|+=+=+ +.++ ..+..+.++|+|.|+++--               |         +
T Consensus        41 ~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~  120 (223)
T PRK08745         41 HYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPA  120 (223)
T ss_pred             ccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCC
Confidence            334554  46799999998 688876654 3445 4578889999999998621               0         0


Q ss_pred             CCC---------------------CCc----cchHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         97 RQL---------------------DYV----PASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        97 ~~~---------------------~~~----~~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      |..                     .+|    +...+-+.++++...   .++.|-.+|||. .+.+.++.++|||.+.+|
T Consensus       121 T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~G  199 (223)
T PRK08745        121 TPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAG  199 (223)
T ss_pred             CCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence            110                     112    223344455444332   247799999997 678888899999999999


Q ss_pred             HHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        149 RPALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       149 ~~~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                      |++..      .+...+.++.+++.+
T Consensus       200 SaiF~------~~d~~~~~~~lr~~~  219 (223)
T PRK08745        200 SAIFN------APDYAQVIAQMRAAV  219 (223)
T ss_pred             hhhhC------CCCHHHHHHHHHHHH
Confidence            98652      222445555665443

>PRK08999 hypothetical protein; Provisional

Probab=97.41  E-value=0.0011  Score=57.37  Aligned_cols=76  Identities=21%  Similarity=0.180  Sum_probs=56.8

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCC--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      -+.++++.+.+.|+|++.++--..|.-+  ..+..++.+.++++..  ++||++-||| +.+++..++++||++|.+-+.
T Consensus       234 h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~  310 (312)
T PRK08999        234 HDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG  310 (312)
T ss_pred             CCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence            4667788888899999988653222111  1223456677776665  7999999999 999999999999999998765


Q ss_pred             H
Q psy16780        151 A  151 (202)
Q Consensus       151 ~  151 (202)
                      |
T Consensus       311 ~  311 (312)
T PRK08999        311 L  311 (312)
T ss_pred             e
Confidence            4

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=97.38  E-value=0.0011  Score=58.02  Aligned_cols=68  Identities=31%  Similarity=0.319  Sum_probs=52.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.++++|+|.|.++.+.|..    ....+.+..+++..+ ++||++ |.+.+.+++.+++.+|||++.++
T Consensus        96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg  163 (325)
T cd00381          96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG  163 (325)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence            466788999999999987643321    123456677766553 688888 99999999999999999999873

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK12656 fructose-6-phosphate aldolase; Reviewed

Probab=97.38  E-value=0.013  Score=48.83  Aligned_cols=90  Identities=21%  Similarity=0.182  Sum_probs=63.4

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH---hCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA---VGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++|+-+-.+++++++..+.++|+++|..  .-||--+.+......+.++++.   ...+..|++.+ +|+..++.++..+
T Consensus       105 Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~a~~~  181 (222)
T PRK12656        105 GYHITATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNVAQVNKAFAL  181 (222)
T ss_pred             CCceEEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHHHc
Confidence            6777776678889999999999988765  3344323222223444444333   33456666655 9999999999999


Q ss_pred             CCCEEEEcHHHHHHhh
Q psy16780        141 GAKMVFVGRPALWGLA  156 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~  156 (202)
                      |||.+-+.-.++..+.
T Consensus       182 G~d~vTvp~~vl~~l~  197 (222)
T PRK12656        182 GAQAVTAGPDVFEAAF  197 (222)
T ss_pred             CCCEEecCHHHHHHHh
Confidence            9999999998887653

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.38  E-value=0.0023  Score=53.90  Aligned_cols=73  Identities=27%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.++...+.|++.+.+.--.+.  .+.+.+.+.++++.+.+  .+|+...|||||.+|+.+++.+||+-|.+||..+
T Consensus        35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~  107 (243)
T TIGR01919        35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL  107 (243)
T ss_pred             HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence            5566778889988877543221  13455777888888776  6999999999999999999999999999999765

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.38  E-value=0.0014  Score=55.24  Aligned_cols=74  Identities=20%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...+.|+|.+.+.--.+. ..+.+.+.+.+.++.+.+   .|+...|||||.+|+.+++.+||+-|.+||..+
T Consensus        33 ~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~  106 (241)
T PRK14114         33 AELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL  106 (241)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence            36688889999999887542221 123355777888887764   699999999999999999999999999999655

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=97.37  E-value=0.0091  Score=49.92  Aligned_cols=125  Identities=16%  Similarity=0.227  Sum_probs=78.1

Q ss_pred             ccCccc--cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeeccC--c-----------------------
Q psy16780         46 QLDETI--NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNHG--G-----------------------   96 (202)
Q Consensus        46 ~~d~~~--~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~g--g-----------------------   96 (202)
                      .+-|++  ..++++++|+.++.|+=+=+ +.+| ..++.+.++|+|.|+++--.  .                       
T Consensus        39 ~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~  118 (229)
T PRK09722         39 HFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPE  118 (229)
T ss_pred             ccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCC
Confidence            344554  45699999988888866554 3445 45788899999999885310  0                       


Q ss_pred             CC----------CC-----------Ccc----chHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         97 RQ----------LD-----------YVP----ASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        97 ~~----------~~-----------~~~----~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      |.          .|           +|.    ...+-+.++++...   .++.|-.+|||. .+.+.++.++|||.+.+|
T Consensus       119 T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~G  197 (229)
T PRK09722        119 TPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVG  197 (229)
T ss_pred             CCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence            10          01           121    23333444444332   247799999998 568889999999999999


Q ss_pred             HHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        149 RPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       149 ~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      |..++.    ..+...+.++.++..++
T Consensus       198 ss~iF~----~~~d~~~~i~~l~~~~~  220 (229)
T PRK09722        198 TSGLFN----LDEDIDEAWDIMTAQIE  220 (229)
T ss_pred             hHHHcC----CCCCHHHHHHHHHHHHH
Confidence            875552    11223455666665444

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=97.35  E-value=0.0011  Score=54.29  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=71.6

Q ss_pred             cHHHHHHHHHhcCCCEEEEec---cCHHH-HHHHHHcCCcEEEeeccCcCC---------------------CC------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI---LTAED-AKIGVEMGASAIMVSNHGGRQ---------------------LD------  100 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~---~~~~~-a~~l~~aG~d~I~v~~~gg~~---------------------~~------  100 (202)
                      ..++++++|+..++|+=+|.-   .+++. ++.+.++|+|.++++.-.|..                     ..      
T Consensus        43 G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~  122 (215)
T PRK13813         43 GLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALE  122 (215)
T ss_pred             CHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Confidence            357899999877666668874   23443 477889999999997532210                     00      


Q ss_pred             ------------------Cc----cchHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEcHHHHHHhhh
Q psy16780        101 ------------------YV----PASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVGRPALWGLAH  157 (202)
Q Consensus       101 ------------------~~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig~~~l~~~~~  157 (202)
                                        .+    ....+-+.++++....++.+ .+|||+.. .++.+++.+|||.+.+||+++.+   
T Consensus       123 ~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~---  198 (215)
T PRK13813        123 FIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNA---  198 (215)
T ss_pred             CHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCC---
Confidence                              00    01112233343333222334 88999875 36778888999999999997632   


Q ss_pred             cChHHHHHHHHHHHHHHH
Q psy16780        158 SGKSGVRKVLDILINEFD  175 (202)
Q Consensus       158 ~G~~~v~~~i~~l~~~L~  175 (202)
                         +...+.++.++++++
T Consensus       199 ---~d~~~~~~~l~~~~~  213 (215)
T PRK13813        199 ---ADPREAAKAINEEIR  213 (215)
T ss_pred             ---CCHHHHHHHHHHHHh
Confidence               123455666666554

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=97.35  E-value=0.0027  Score=51.27  Aligned_cols=82  Identities=24%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             cHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.++.+++.++ +++....+.+.+.++.+.++|+|++...+.          +.+ +.+.++..  .++++.  |+.|
T Consensus        42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~----------~~~-~~~~~~~~--~~~~i~--gv~t  106 (190)
T cd00452          42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL----------DPE-VVKAANRA--GIPLLP--GVAT  106 (190)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC----------CHH-HHHHHHHc--CCcEEC--CcCC
Confidence            4558999998874 666776778899999999999999964221          122 23333434  567776  8899


Q ss_pred             HHHHHHHHHhCCCEEEEc
Q psy16780        131 GTDVFKALALGAKMVFVG  148 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig  148 (202)
                      .+++.+++.+|||.+.+.
T Consensus       107 ~~e~~~A~~~Gad~i~~~  124 (190)
T cd00452         107 PTEIMQALELGADIVKLF  124 (190)
T ss_pred             HHHHHHHHHCCCCEEEEc
Confidence            999999999999999983

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.34  E-value=0.0022  Score=52.63  Aligned_cols=82  Identities=13%  Similarity=0.119  Sum_probs=60.2

Q ss_pred             ccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         51 INWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        51 ~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      ...+.|+++++.++ +-|.+..+++.++++.+.++|+++++--+          .+.+.+... +..  ++|.+-  |+.
T Consensus        41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a-~~~--~i~~iP--G~~  105 (201)
T PRK06015         41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAA-NDS--DVPLLP--GAA  105 (201)
T ss_pred             cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHH-HHc--CCCEeC--CCC
Confidence            35678888887763 44666677999999999999999986411          122333333 333  566665  899


Q ss_pred             CHHHHHHHHHhCCCEEEE
Q psy16780        130 YGTDVFKALALGAKMVFV  147 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~i  147 (202)
                      |+.++..++.+||+.|=+
T Consensus       106 TptEi~~A~~~Ga~~vK~  123 (201)
T PRK06015        106 TPSEVMALREEGYTVLKF  123 (201)
T ss_pred             CHHHHHHHHHCCCCEEEE
Confidence            999999999999998754

>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants

Probab=97.34  E-value=0.0042  Score=53.51  Aligned_cols=147  Identities=15%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             ccCccccHHHHHHHHHhc--CCCEE-EEec-------cC--------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHH
Q psy16780         46 QLDETINWSDVTWLKTIT--KLPIV-LKGI-------LT--------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE  107 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~--~~Pv~-vK~~-------~~--------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~  107 (202)
                      ...|-++...++++++..  +.+.. +...       .+        .+.|..+++.|+..++++-++...-.-..|.+-
T Consensus        98 l~sPiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~~~~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lL  177 (287)
T PF04898_consen   98 LDSPILSNGQLEKLRSLDDPGFKAATLDATFPAEGGDEGLEEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLL  177 (287)
T ss_dssp             ESSSB--HHHHHHHHHH--CCCCEEEEESEEESTTSTTCHHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHH
T ss_pred             ecCCEECHHHHHHHHHhhccCCCccEEEEEEECCcChhHHHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHH
Confidence            445666677788888752  23221 1111       11        245778899999999998754211111123344


Q ss_pred             HHHHHHHHh-----CCCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcHHH--HHHhhhcC-------hHHHHHHHHHHHH
Q psy16780        108 ALPEIAKAV-----GHKVDVYL-DGGVRYGTDVFKALALGAKMVFVGRPA--LWGLAHSG-------KSGVRKVLDILIN  172 (202)
Q Consensus       108 ~l~~i~~~~-----~~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~~~--l~~~~~~G-------~~~v~~~i~~l~~  172 (202)
                      ++..+.+.+     +.++-||+ +|-+|+.-|+.-.+-.|||+|.=--+|  +..+..+|       .+.+.++++.+.+
T Consensus       178 Av~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYla~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~k  257 (287)
T PF04898_consen  178 AVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYLAYETIRELAERGELPELSPEEAIKNYRKALEK  257 (287)
T ss_dssp             HHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHCCCCCCCCT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            445554442     44677777 888999999999999999998522111  11111223       3678899999999


Q ss_pred             HHHHHHHHhCCCCHHhhhhc
Q psy16780        173 EFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       173 ~L~~~m~~~G~~~i~el~~~  192 (202)
                      +|...|..+|.++++.-++.
T Consensus       258 GllKimSKMGIstl~SY~ga  277 (287)
T PF04898_consen  258 GLLKIMSKMGISTLQSYRGA  277 (287)
T ss_dssp             HHHHHHHCTT--BHHHHCCS
T ss_pred             HHHHHHHhcChHHhhhcccc
Confidence            99999999999999887765

In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=97.34  E-value=0.0041  Score=53.62  Aligned_cols=97  Identities=15%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             HhhhccCccccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---C
Q psy16780         42 YITSQLDETINWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---G  117 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~  117 (202)
                      |+.-.++.+...+.++.+|+..+ .+|.| ++.+.++++.+.++|+|.|.+.|.          +.+.+.++.+.+   .
T Consensus       166 Hi~~~g~~~~i~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~  234 (284)
T PRK06096        166 HRHFLHDPQDWSGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLA  234 (284)
T ss_pred             HHHHhCCcccHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccC
Confidence            33434444445568888887653 44444 668999999999999999999764          233344443333   3


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      +++.+-++||| +.+.+.+...+|+|.+.+|.+
T Consensus       235 ~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal  266 (284)
T PRK06096        235 PHCTLSLAGGI-NLNTLKNYADCGIRLFITSAP  266 (284)
T ss_pred             CCeEEEEECCC-CHHHHHHHHhcCCCEEEECcc
Confidence            57889999998 578888888899999998876

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=97.31  E-value=0.0019  Score=57.24  Aligned_cols=90  Identities=24%  Similarity=0.232  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhc---------CCCEEEEecc---CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         53 WSDVTWLKTIT---------KLPIVLKGIL---TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        53 ~~~i~~i~~~~---------~~Pv~vK~~~---~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      .+.++++++..         +..|.+-...   +.+-++.+.++|+|.++++...|..    .-..+.++.+++.++ ++
T Consensus        76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s----~~~~~~ik~ik~~~~-~~  150 (352)
T PF00478_consen   76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHS----EHVIDMIKKIKKKFP-DV  150 (352)
T ss_dssp             HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTS----HHHHHHHHHHHHHST-TS
T ss_pred             HHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccH----HHHHHHHHHHHHhCC-Cc
Confidence            34677776532         2333333322   3577889999999999998754432    223456777777764 79


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      |||+ |.|-|.+-+...+.+|||+|-+|
T Consensus       151 ~via-GNV~T~e~a~~L~~aGad~vkVG  177 (352)
T PF00478_consen  151 PVIA-GNVVTYEGAKDLIDAGADAVKVG  177 (352)
T ss_dssp             EEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred             eEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence            9996 88999999999999999999887

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.31  E-value=0.0057  Score=50.17  Aligned_cols=95  Identities=12%  Similarity=0.045  Sum_probs=69.9

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..+ +.++|++- +++|+.++..+.++|++.|.+.-.+   .-++   ...++.++.-+ +++|++.+||
T Consensus        82 SP~~~~~vi~~a~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vK~FPa~---~~GG---~~yikal~~pl-p~~~l~ptGG  152 (201)
T PRK06015         82 SPGTTQELLAAAN-DSDVPLLP-GAATPSEVMALREEGYTVLKFFPAE---QAGG---AAFLKALSSPL-AGTFFCPTGG  152 (201)
T ss_pred             CCCCCHHHHHHHH-HcCCCEeC-CCCCHHHHHHHHHCCCCEEEECCch---hhCC---HHHHHHHHhhC-CCCcEEecCC
Confidence            4555566777766 45888875 6899999999999999999995421   0011   24455555445 4799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      |.. +++.+.+++|+.+++.|+.+.
T Consensus       153 V~~-~n~~~~l~ag~~~~~ggs~l~  176 (201)
T PRK06015        153 ISL-KNARDYLSLPNVVCVGGSWVA  176 (201)
T ss_pred             CCH-HHHHHHHhCCCeEEEEchhhC
Confidence            865 799999999988777777665

>PRK01362 putative translaldolase; Provisional

Probab=97.31  E-value=0.012  Score=48.74  Aligned_cols=98  Identities=20%  Similarity=0.230  Sum_probs=67.9

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCH
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYG  131 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~  131 (202)
                      .++.+++. ++|+-+=.+.+...+..+.++|+++|..  .-||--+.+......+.++.+.+   +.+..|++ ..+|+.
T Consensus        93 a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~  168 (214)
T PRK01362         93 AVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHP  168 (214)
T ss_pred             HHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCH
Confidence            34444332 6777776678888899999999998876  33443344444455555554443   22455555 559999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        132 TDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      .++.++..+|||.+-+.-.++..+.
T Consensus       169 ~~v~~~~~~G~d~iTi~~~vl~~l~  193 (214)
T PRK01362        169 MHVLEAALAGADIATIPYKVIKQLF  193 (214)
T ss_pred             HHHHHHHHcCCCEEecCHHHHHHHH
Confidence            9999999999999999988887654

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=97.30  E-value=0.0073  Score=52.00  Aligned_cols=108  Identities=16%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             CHHHHHHHHH-cCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEec--CCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVE-MGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDG--GVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~-aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G--GI~~~~D~~kal~~GAd~V~ig  148 (202)
                      ++++++.+.+ .|+|++.++.+  .|+.......+++.|.++++.+  ++|+++-|  ||. .+++.+++..|++.|-++
T Consensus       154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv~  230 (282)
T TIGR01859       154 DPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKINID  230 (282)
T ss_pred             CHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEEEC
Confidence            7899999886 99999997521  2221112234677889998887  79999999  875 577999999999999999


Q ss_pred             HHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      |.+..+..       ...      ..-.....+.+.+.++..|..+|..
T Consensus       231 T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~  279 (282)
T TIGR01859       231 TDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA  279 (282)
T ss_pred             cHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            97654311       011      1223344566777777788877753

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=97.30  E-value=0.002  Score=52.56  Aligned_cols=83  Identities=23%  Similarity=0.241  Sum_probs=58.7

Q ss_pred             cccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         50 TINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      ....+.|+.+++++ ++-|.+..+.+.++++.+.++|+++++--+          .+.+.+..++ ..  ++|++-  |+
T Consensus        44 ~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~-~~--~i~~iP--G~  108 (196)
T PF01081_consen   44 PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAR-EY--GIPYIP--GV  108 (196)
T ss_dssp             TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHH-HH--TSEEEE--EE
T ss_pred             ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCcccC--Cc
Confidence            34567899888877 455666667999999999999999996421          1233444433 33  688877  89


Q ss_pred             CCHHHHHHHHHhCCCEEEE
Q psy16780        129 RYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~i  147 (202)
                      .|+.++.+|+.+||+.|=+
T Consensus       109 ~TptEi~~A~~~G~~~vK~  127 (196)
T PF01081_consen  109 MTPTEIMQALEAGADIVKL  127 (196)
T ss_dssp             SSHHHHHHHHHTT-SEEEE
T ss_pred             CCHHHHHHHHHCCCCEEEE
Confidence            9999999999999998876

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.009  Score=49.31  Aligned_cols=108  Identities=19%  Similarity=0.187  Sum_probs=72.1

Q ss_pred             HhcCCCEEEEec--cCHHHH-HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH
Q psy16780         61 TITKLPIVLKGI--LTAEDA-KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA  137 (202)
Q Consensus        61 ~~~~~Pv~vK~~--~~~~~a-~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka  137 (202)
                      +++++-+.+=+.  .+++.. +++.++|+|.+.++-+-..+..+..+.++.+..+++.......|-..||| +++++..+
T Consensus       103 ~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~  181 (217)
T COG0269         103 KEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLF  181 (217)
T ss_pred             HHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHH
Confidence            345777777654  456665 55555999999994321112223344467777877766444788889997 68999999


Q ss_pred             HHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        138 LALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       138 l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      ...|++.|.+||++..+   .+   ..+..+.++++++
T Consensus       182 ~~~~~~ivIvGraIt~a---~d---p~~~a~~~~~~i~  213 (217)
T COG0269         182 KGIGADIVIVGRAITGA---KD---PAEAARKFKEEID  213 (217)
T ss_pred             hcCCCCEEEECchhcCC---CC---HHHHHHHHHHHHh
Confidence            99999999999998742   33   3344455555553

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=97.28  E-value=0.0038  Score=54.27  Aligned_cols=96  Identities=18%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             HHHHHHHHhc-----CCCEEEEeccCHHHHHHHHH------cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         54 SDVTWLKTIT-----KLPIVLKGILTAEDAKIGVE------MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        54 ~~i~~i~~~~-----~~Pv~vK~~~~~~~a~~l~~------aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      +.++++++..     ..+|.| ++.+.++++.+.+      +|+|.|-+.|..-. ......+.+.+.+..+.++++.|+
T Consensus       188 ~av~~~r~~~~~~~~~~kIeV-Ev~tleea~ea~~~~~~~~agaDiImLDnm~~~-~~~~~~~~e~l~~av~~~~~~~~l  265 (308)
T PLN02716        188 NAVQSADKYLEEKGLSMKIEV-ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVP-LENGDVDVSMLKEAVELINGRFET  265 (308)
T ss_pred             HHHHHHHHhhhhcCCCeeEEE-EECCHHHHHHHHHhcccccCCCCEEEeCCCccc-ccccCCCHHHHHHHHHhhCCCceE
Confidence            3566666522     234444 5678999999999      99999999885110 011123556666666666667999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        123 YLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      -+|||| +.+.+.+...+|+|.+.+|....
T Consensus       266 EaSGGI-t~~ni~~yA~tGVD~Is~Galth  294 (308)
T PLN02716        266 EASGNV-TLDTVHKIGQTGVTYISSGALTH  294 (308)
T ss_pred             EEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence            999998 56888888889999999998543

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=97.25  E-value=0.0058  Score=54.90  Aligned_cols=95  Identities=21%  Similarity=0.195  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+.++.+++. ++-+.+-..  .++ +.++.+ ..++|.|.+...-..+  +..+.++.+.++++. ..+++|.++|||.
T Consensus       266 ~~ai~~akk~-GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~-~~~~~I~VdGGI~  340 (391)
T PRK13307        266 EKAIHEAQKT-GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKA-GGKILVAVAGGVR  340 (391)
T ss_pred             HHHHHHHHHc-CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHh-CCCCcEEEECCcC
Confidence            3455555543 555555222  234 445554 7899999885311111  223455667777654 3478999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                       .+++.+++.+|||.+.+||++..
T Consensus       341 -~eti~~l~~aGADivVVGsaIf~  363 (391)
T PRK13307        341 -VENVEEALKAGADILVVGRAITK  363 (391)
T ss_pred             -HHHHHHHHHcCCCEEEEeHHHhC
Confidence             78899999999999999999763

>KOG4201|consensus

Probab=97.25  E-value=0.0061  Score=50.44  Aligned_cols=81  Identities=19%  Similarity=0.244  Sum_probs=60.7

Q ss_pred             eccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         71 GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        71 ~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      ++.+.++.+++++.|+.-|-+.|+.-..++-...+.   ..+.+.++.++-+++-.||+|++|+.+.-..|..+|.+|..
T Consensus       192 EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstT---skL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEs  268 (289)
T KOG4201|consen  192 EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTT---SKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGES  268 (289)
T ss_pred             eeccHHHHHHHHHhCcEEEeecCCccceeeechhhH---HHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHH
Confidence            467788889999999998888775432222222222   33333455578899999999999999999999999999999


Q ss_pred             HHHH
Q psy16780        151 ALWG  154 (202)
Q Consensus       151 ~l~~  154 (202)
                      +++.
T Consensus       269 lmk~  272 (289)
T KOG4201|consen  269 LMKQ  272 (289)
T ss_pred             HHhc
Confidence            9873

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=97.22  E-value=0.0025  Score=53.02  Aligned_cols=66  Identities=21%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        84 aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .|...+-+-.++|.   +.+.+.+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus       148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~  213 (223)
T TIGR01768       148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE  213 (223)
T ss_pred             cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence            45665555433222   12345667788777653 69999999999999999999999999999998875

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=97.19  E-value=0.0051  Score=49.66  Aligned_cols=97  Identities=13%  Similarity=0.181  Sum_probs=57.7

Q ss_pred             HHHHHHHHhcCCCEEEEec-cC-HHHHHHHHHcCCcEEEeecc-CcC-CCCCccchHHHHHHHHHHhC---CCcEEEEec
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LT-AEDAKIGVEMGASAIMVSNH-GGR-QLDYVPASIEALPEIAKAVG---HKVDVYLDG  126 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~-~~~a~~l~~aG~d~I~v~~~-gg~-~~~~~~~~~~~l~~i~~~~~---~~ipiia~G  126 (202)
                      +.++.+++ .++.+++=.. .+ .+.++... .++|++.+.+. .|+ .........+.+.++++...   .++|+++.|
T Consensus        96 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G  173 (211)
T cd00429          96 RTIQLIKE-LGMKAGVALNPGTPVEVLEPYL-DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG  173 (211)
T ss_pred             HHHHHHHH-CCCeEEEEecCCCCHHHHHHHH-hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            34555543 2444443222 22 34445443 44898877542 222 21111222334555554441   248999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ||+. +++.+++..|||.|.+||+++.
T Consensus       174 GI~~-env~~~~~~gad~iivgsai~~  199 (211)
T cd00429         174 GINL-ETIPLLAEAGADVLVAGSALFG  199 (211)
T ss_pred             CCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence            9996 9999999999999999999984

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=97.15  E-value=0.0054  Score=62.67  Aligned_cols=119  Identities=11%  Similarity=0.127  Sum_probs=84.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH-----hCCCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-----VGHKVDVYL-DGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-----~~~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.|..+++.|+..+++|-++-..-....|.+-++..+.+.     ++.++.||+ +|.+|+.-|++.++..||++|.-.-
T Consensus       601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL  680 (1485)
T PRK11750        601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL  680 (1485)
T ss_pred             HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence            4467788899999999876421111123444445555443     345788888 9999999999999999999995333


Q ss_pred             HHH--HHhhhcC------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780        150 PAL--WGLAHSG------KSGVRKVLDILINEFDQALALSGCTSVGEIQREMV  194 (202)
Q Consensus       150 ~~l--~~~~~~G------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~  194 (202)
                      ++-  ..+...|      .+.+.++++.+.++|..+|..+|.++++.-++..+
T Consensus       681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqi  733 (1485)
T PRK11750        681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQL  733 (1485)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCccc
Confidence            321  1111223      36788999999999999999999999998876543

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=97.15  E-value=0.0093  Score=48.68  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             HHHHHHHHhcCCCEEEEec-cC-HHHHHHHHHcCCcEEEeecc-CcC-CCCCccchHHHHHHHHHHhCC---CcEEEEec
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LT-AEDAKIGVEMGASAIMVSNH-GGR-QLDYVPASIEALPEIAKAVGH---KVDVYLDG  126 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~-~~~a~~l~~aG~d~I~v~~~-gg~-~~~~~~~~~~~l~~i~~~~~~---~ipiia~G  126 (202)
                      +.++.+++. ++.+++-.. .+ .+.++. ...++|++.+... .|+ .....+...+.+.++++....   ..+|.+.|
T Consensus       100 ~~~~~~~~~-~~~~g~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G  177 (220)
T PRK05581        100 RLLQLIKSA-GIKAGLVLNPATPLEPLED-VLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG  177 (220)
T ss_pred             HHHHHHHHc-CCEEEEEECCCCCHHHHHH-HHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence            455555543 555444332 23 444444 3445888877542 222 111111223334444443321   14466889


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ||+. +++.+++..|+|.|.+||+++.
T Consensus       178 GI~~-~nv~~l~~~GaD~vvvgSai~~  203 (220)
T PRK05581        178 GINA-DNIKECAEAGADVFVAGSAVFG  203 (220)
T ss_pred             CCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence            9998 7999999999999999999874

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=97.10  E-value=0.004  Score=52.90  Aligned_cols=91  Identities=21%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             HHHHHHHHcC-CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         76 EDAKIGVEMG-ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        76 ~~a~~l~~aG-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +.++.+...| +|+|+++|.+    .+.+++++.+..+++.. .++|++..||+ +++.+.+++.. ||++.+||.|=..
T Consensus       161 e~a~~~~~~~~aDavivtG~~----TG~~~d~~~l~~vr~~~-~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~  233 (257)
T TIGR00259       161 SIALDTVERGLADAVILSGKT----TGTEVDLELLKLAKETV-KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKD  233 (257)
T ss_pred             HHHHHHHHhcCCCEEEECcCC----CCCCCCHHHHHHHHhcc-CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccC
Confidence            5577777666 9999998842    12356788888887644 36899999996 67888888887 9999999986421


Q ss_pred             hh----hcChHHHHHHHHHHHHHH
Q psy16780        155 LA----HSGKSGVRKVLDILINEF  174 (202)
Q Consensus       155 ~~----~~G~~~v~~~i~~l~~~L  174 (202)
                       .    ....+.+.++++.+++.+
T Consensus       234 -G~~~n~~D~~rV~~Fm~~v~~~~  256 (257)
T TIGR00259       234 -GVFNNFVDQARVSQFVEKVAHGL  256 (257)
T ss_pred             -CccCCCcCHHHHHHHHHHHHHhc
Confidence             0    112455666666655443

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PRK12376 putative translaldolase; Provisional

Probab=97.07  E-value=0.03  Score=47.02  Aligned_cols=97  Identities=20%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             HHHHHHhcCCCEEEEeccCHHHHHHHHHc----CCcEEEeeccCcCCCCCccchHHHHHHHHHHhC--CCcEEEEecCCC
Q psy16780         56 VTWLKTITKLPIVLKGILTAEDAKIGVEM----GASAIMVSNHGGRQLDYVPASIEALPEIAKAVG--HKVDVYLDGGVR  129 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~~~~~~a~~l~~a----G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipiia~GGI~  129 (202)
                      ++.+++. ++|+-+-.++++.++..+..+    |+++|..  .-||-.+.+......+.++.+.+.  .+..|++.+ +|
T Consensus       105 i~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR  180 (236)
T PRK12376        105 IKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PR  180 (236)
T ss_pred             HHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cC
Confidence            4444333 677777667777777644444    5777665  334433333334445555544332  356677755 99


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +..++.+++.+|||.+-+.-.++..+.
T Consensus       181 ~~~~v~~a~~~Gad~vTvp~~v~~~l~  207 (236)
T PRK12376        181 EVYNIIQADQLGCDIITVTPDVLKKLP  207 (236)
T ss_pred             CHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence            999999999999999999988887654

>PRK12653 fructose-6-phosphate aldolase; Reviewed

Probab=97.06  E-value=0.031  Score=46.43  Aligned_cols=90  Identities=10%  Similarity=0.124  Sum_probs=62.1

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=.+++.+++..+..+|+++|...  -||--+.+......+.++.+.+   ..+..|++. .+|+..++.+++.+
T Consensus       103 GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaA-S~r~~~~v~~~~~~  179 (220)
T PRK12653        103 GIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAA-SFKTPRQALDCLLA  179 (220)
T ss_pred             CCCeeEEEecCHHHHHHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEE-ecCCHHHHHHHHHc
Confidence            67777666778888888888999988653  2332222333333444443333   335656664 49999999999999


Q ss_pred             CCCEEEEcHHHHHHhh
Q psy16780        141 GAKMVFVGRPALWGLA  156 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~  156 (202)
                      |||.+-+.-.++..+.
T Consensus       180 G~d~vTip~~vl~~l~  195 (220)
T PRK12653        180 GCESITLPLDVAQQMI  195 (220)
T ss_pred             CCCEEECCHHHHHHHH
Confidence            9999999998887654

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.05  E-value=0.0034  Score=58.10  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.+....|+.    ...++.++++++.. +++||++ |.|.|.+++..++.+|||++-+|
T Consensus       243 ~~~~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~-~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg  310 (495)
T PTZ00314        243 IERAAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNY-PHVDIIA-GNVVTADQAKNLIDAGADGLRIG  310 (495)
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhC-CCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence            366788999999999998644422    22356788887765 3688888 99999999999999999999754

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.05  E-value=0.0037  Score=58.42  Aligned_cols=77  Identities=22%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcC--CCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH-----------HHHHHHHHhC
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGR--QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG-----------TDVFKALALG  141 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~-----------~D~~kal~~G  141 (202)
                      .+.|+...+.|||-+++-.-.+.  ......+..+.++++++.+  .+|+..-||||+.           +++.+++.+|
T Consensus       270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G  347 (538)
T PLN02617        270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG  347 (538)
T ss_pred             HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcC
Confidence            36789999999999887553221  1112234577788888777  7999999999998           5589999999


Q ss_pred             CCEEEEcHHHHH
Q psy16780        142 AKMVFVGRPALW  153 (202)
Q Consensus       142 Ad~V~ig~~~l~  153 (202)
                      ||-|.+++..+.
T Consensus       348 adkV~i~s~Av~  359 (538)
T PLN02617        348 ADKISIGSDAVY  359 (538)
T ss_pred             CCEEEEChHHHh
Confidence            999999997765

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.05  E-value=0.003  Score=56.94  Aligned_cols=68  Identities=18%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.++...|.    +....+.+.++++.+ ++++|++ |+|.|.+++..++.+|||+|.+|
T Consensus       155 ~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~-p~~~vi~-g~V~T~e~a~~l~~aGaD~I~vG  222 (404)
T PRK06843        155 IERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKY-PNLDLIA-GNIVTKEAALDLISVGADCLKVG  222 (404)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhC-CCCcEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence            36789999999999998765432    122345677777665 3566555 88999999999999999999876

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.04  E-value=0.0078  Score=49.74  Aligned_cols=83  Identities=14%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             cccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         50 TINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      ....+.|+.+++.+ ++-|....+.+.++++.+.++|+++++.-+.          +.+.+..+.+ .  .+|++-  |+
T Consensus        51 ~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~-~--~i~~iP--G~  115 (212)
T PRK05718         51 PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE-G--PIPLIP--GV  115 (212)
T ss_pred             ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH-c--CCCEeC--CC
Confidence            34567899998876 4556666779999999999999999976321          2234444332 2  566664  79


Q ss_pred             CCHHHHHHHHHhCCCEEEE
Q psy16780        129 RYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~i  147 (202)
                      .|+.++.+++.+||+.|-+
T Consensus       116 ~TptEi~~a~~~Ga~~vKl  134 (212)
T PRK05718        116 STPSELMLGMELGLRTFKF  134 (212)
T ss_pred             CCHHHHHHHHHCCCCEEEE
Confidence            9999999999999998876

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0061  Score=51.16  Aligned_cols=75  Identities=32%  Similarity=0.371  Sum_probs=59.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.++...+.|+..+++---.| ...+.+.+.+.+.++.+.+  ++||=.-|||||.+++.+.+.+|++.|.+|+.-+
T Consensus        34 ~~~a~~~~~~Ga~~lHlVDLdg-A~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av  108 (241)
T COG0106          34 LEVAKKWSDQGAEWLHLVDLDG-AKAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV  108 (241)
T ss_pred             HHHHHHHHHcCCcEEEEeeccc-cccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee
Confidence            4778899999999988643111 1123455778889998887  8999999999999999999999999999999543

>PRK08005 epimerase; Validated

Probab=97.03  E-value=0.025  Score=46.67  Aligned_cols=104  Identities=15%  Similarity=0.198  Sum_probs=68.8

Q ss_pred             cCccc--cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc---------------C---------cCC
Q psy16780         47 LDETI--NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH---------------G---------GRQ   98 (202)
Q Consensus        47 ~d~~~--~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~---------------g---------g~~   98 (202)
                      +=|++  .-+.++++|+.++.|+=+=+ +.+| ..++.+.++|+|.|+++--               |         +|.
T Consensus        39 FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp  118 (210)
T PRK08005         39 FINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATP  118 (210)
T ss_pred             cCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCC
Confidence            33554  35699999998888866554 3445 4578889999999998521               0         011


Q ss_pred             C---------------------CCcc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         99 L---------------------DYVP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        99 ~---------------------~~~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .                     .+|+    ...+-++++++.. .+..|-.+|||. .+.+.++.++|||.+.+||++.
T Consensus       119 ~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~-~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF  195 (210)
T PRK08005        119 LLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF-PAAECWADGGIT-LRAARLLAAAGAQHLVIGRALF  195 (210)
T ss_pred             HHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc-ccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence            0                     1122    2233444444433 234699999987 6778889999999999999865

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=97.02  E-value=0.025  Score=48.95  Aligned_cols=79  Identities=27%  Similarity=0.373  Sum_probs=60.2

Q ss_pred             cCHHHHHHHHHcCCcEEEee--c-cCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC--CCCHHHHHHHHHhCCCEEEE
Q psy16780         73 LTAEDAKIGVEMGASAIMVS--N-HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG--VRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG--I~~~~D~~kal~~GAd~V~i  147 (202)
                      .++++++.+.+.|+|++-++  + ||-..-......++.|.++++.+. ++|+++-||  |. .+++.+++..|++-|-+
T Consensus       154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv  231 (293)
T PRK07315        154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV  231 (293)
T ss_pred             CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence            36899999999999999997  3 322211112346778899988762 499999998  64 47899999999999999


Q ss_pred             cHHHHH
Q psy16780        148 GRPALW  153 (202)
Q Consensus       148 g~~~l~  153 (202)
                      +|.+..
T Consensus       232 ~T~i~~  237 (293)
T PRK07315        232 NTECQI  237 (293)
T ss_pred             ccHHHH
Confidence            998764

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=97.02  E-value=0.011  Score=48.94  Aligned_cols=117  Identities=19%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             HHHHHHHHHh-cCCCEEE--EeccCHHH-HHHHHHcCCcEEEeeccCcCC-----------------------C------
Q psy16780         53 WSDVTWLKTI-TKLPIVL--KGILTAED-AKIGVEMGASAIMVSNHGGRQ-----------------------L------   99 (202)
Q Consensus        53 ~~~i~~i~~~-~~~Pv~v--K~~~~~~~-a~~l~~aG~d~I~v~~~gg~~-----------------------~------   99 (202)
                      .+.++++++. .+.||++  |..-.+.. ++.+.++|+|.+++++.++..                       .      
T Consensus        44 ~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~  123 (216)
T PRK13306         44 MKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ  123 (216)
T ss_pred             HHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence            3578999987 4778774  44322333 335889999999998644311                       0      


Q ss_pred             ---C-----------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcC
Q psy16780        100 ---D-----------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG  159 (202)
Q Consensus       100 ---~-----------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G  159 (202)
                         +                 +..-....+..+++..+.+..+..+|||+-... .+....|||.+.+|||+..+     
T Consensus       124 ~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~-~~~~~~~ad~~VvGr~I~~a-----  197 (216)
T PRK13306        124 QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDL-KLFKGIPVKTFIAGRAIRGA-----  197 (216)
T ss_pred             HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhH-HHHhcCCCCEEEECCcccCC-----
Confidence               0                 000011122233333333455899999984321 12334599999999996642     


Q ss_pred             hHHHHHHHHHHHHHHHH
Q psy16780        160 KSGVRKVLDILINEFDQ  176 (202)
Q Consensus       160 ~~~v~~~i~~l~~~L~~  176 (202)
                       +...+.++.++++++.
T Consensus       198 -~dp~~a~~~i~~~i~~  213 (216)
T PRK13306        198 -ADPAAAARAFKDEIAK  213 (216)
T ss_pred             -CCHHHHHHHHHHHHHh
Confidence             2234555666666643

>PRK06801 hypothetical protein; Provisional

Probab=97.02  E-value=0.033  Score=48.06  Aligned_cols=108  Identities=15%  Similarity=0.139  Sum_probs=73.0

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEEecC--CCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYLDGG--VRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia~GG--I~~~~D~~kal~~GAd~V~ig  148 (202)
                      ++++++.+. +.|+|++-++-+.-.....+  ...++.+.++++.+  ++|+++-||  |. .+++.+++.+|++-|-++
T Consensus       157 ~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~  233 (286)
T PRK06801        157 DPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINFY  233 (286)
T ss_pred             CHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEeh
Confidence            568888877 89999999853211112222  24777889988877  799999998  66 578999999999999999


Q ss_pred             HHHHHHhh-------hcCh-------HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWGLA-------HSGK-------SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~~~-------~~G~-------~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      |.+..+..       ...+       .-.....+.+++.++..|..+|..
T Consensus       234 T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~  283 (286)
T PRK06801        234 TGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA  283 (286)
T ss_pred             hHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            97765311       0111       112333455666677777777653

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.019  Score=47.56  Aligned_cols=122  Identities=19%  Similarity=0.229  Sum_probs=79.6

Q ss_pred             ccCcccc--HHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc------------------------CcC
Q psy16780         46 QLDETIN--WSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH------------------------GGR   97 (202)
Q Consensus        46 ~~d~~~~--~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~------------------------gg~   97 (202)
                      .+=|+++  -.+++++++.++.|+=|=+ +.++ ..+..+.++|+|.|+++--                        ++|
T Consensus        41 hFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~T  120 (220)
T COG0036          41 HFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPAT  120 (220)
T ss_pred             CcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCC
Confidence            4556665  4699999998889988775 3455 5578899999999998631                        111


Q ss_pred             CC---------------------CCc----cchHHHHHHHHHHhCC--CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         98 QL---------------------DYV----PASIEALPEIAKAVGH--KVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        98 ~~---------------------~~~----~~~~~~l~~i~~~~~~--~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      ..                     .+|    +...+-++++++....  ++-|-.+|||. .+.+.++.++|||.+..||+
T Consensus       121 p~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSa  199 (220)
T COG0036         121 PLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSA  199 (220)
T ss_pred             CHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEE
Confidence            11                     122    2344455565555432  56688899985 47777888899999999995


Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                      +..     +. .....++.++..+
T Consensus       200 lF~-----~~-d~~~~i~~~~~~~  217 (220)
T COG0036         200 LFG-----AD-DYKATIRELRGEL  217 (220)
T ss_pred             EeC-----Cc-cHHHHHHHHHHHh
Confidence            542     22 2444555555443

>PRK12655 fructose-6-phosphate aldolase; Reviewed

Probab=96.99  E-value=0.046  Score=45.47  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=66.9

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=.+++++++-.+..+|+++|...  -||--+.+......+.++.+.+   +.+..|++. .+|+..++.+++.+
T Consensus       103 GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaA-S~r~~~~v~~~~~~  179 (220)
T PRK12655        103 GIPTLGTAVYSAAQGLLAALAGAKYVAPY--VNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAA-SFKTPRQALDCLLA  179 (220)
T ss_pred             CCceeEeEecCHHHHHHHHHcCCeEEEee--cchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEE-ecCCHHHHHHHHHc
Confidence            66666666678888888888999877653  2332222223334444443332   335666664 49999999999999


Q ss_pred             CCCEEEEcHHHHHHhhhcC--hHHHHHHHHHH
Q psy16780        141 GAKMVFVGRPALWGLAHSG--KSGVRKVLDIL  170 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~~~G--~~~v~~~i~~l  170 (202)
                      |||.+-+.-.++..+....  .+++++|.+.|
T Consensus       180 G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw  211 (220)
T PRK12655        180 GCQSITLPLDVAQQMLNTPAVESAIEKFEQDW  211 (220)
T ss_pred             CCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence            9999999998887654322  24444444433

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.95  E-value=0.0064  Score=50.62  Aligned_cols=81  Identities=17%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHhc-----CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         52 NWSDVTWLKTIT-----KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        52 ~~~~i~~i~~~~-----~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      ..+.|+.+++..     ++-|.+..+++.++++.+.++|+++++--+          .+.+.+..+ +..  ++|++-  
T Consensus        53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~-~~~--~i~~iP--  117 (222)
T PRK07114         53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVC-NRR--KVPYSP--  117 (222)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHH-HHc--CCCEeC--
Confidence            456677776433     244566667999999999999999986421          122333333 322  677765  


Q ss_pred             CCCCHHHHHHHHHhCCCEEEE
Q psy16780        127 GVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~i  147 (202)
                      |+.|+.++..++.+||+.|=+
T Consensus       118 G~~TpsEi~~A~~~Ga~~vKl  138 (222)
T PRK07114        118 GCGSLSEIGYAEELGCEIVKL  138 (222)
T ss_pred             CCCCHHHHHHHHHCCCCEEEE
Confidence            899999999999999997754

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=96.95  E-value=0.0062  Score=52.39  Aligned_cols=93  Identities=14%  Similarity=0.208  Sum_probs=60.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+.+.|++++.+.|+.|....-..... +.++.+++.+.+++|||+.-|- +..++.+..    .+|||++++..|
T Consensus        25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP  103 (289)
T cd00951          25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPP  103 (289)
T ss_pred             HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence            3467788999999999876553322122222 2345556666778999996665 666666543    379999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.   -+.+++.++++.+.+
T Consensus       104 ~y~~---~~~~~i~~~f~~v~~  122 (289)
T cd00951         104 YLTE---APQEGLYAHVEAVCK  122 (289)
T ss_pred             CCCC---CCHHHHHHHHHHHHh
Confidence            8753   244555555555544

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=96.94  E-value=0.0072  Score=52.34  Aligned_cols=94  Identities=15%  Similarity=0.207  Sum_probs=61.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+.+.|+++|.+.|+.|....-.... .+.+..+++.+.+++|||+.-|- +..++++..    .+|||+|++..|
T Consensus        32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP  110 (303)
T PRK03620         32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPP  110 (303)
T ss_pred             HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence            446778899999999987655322211222 22445566667778999986563 666665544    379999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      +++.   -..+++.++++.+.+.
T Consensus       111 ~y~~---~~~~~i~~~f~~va~~  130 (303)
T PRK03620        111 YLTE---APQEGLAAHVEAVCKS  130 (303)
T ss_pred             CCCC---CCHHHHHHHHHHHHHh
Confidence            8752   2355566666665543

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.92  E-value=0.0041  Score=57.67  Aligned_cols=68  Identities=21%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+-++.+.++|+|.|.++...|..    ...++.++++++..+ +.+||+ |+|.|.+++..++.+|||+|.+|
T Consensus       250 ~~r~~~l~~ag~d~i~iD~~~g~~----~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg  317 (505)
T PLN02274        250 KERLEHLVKAGVDVVVLDSSQGDS----IYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG  317 (505)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCc----HHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence            477899999999999998754432    234567888877652 466665 88999999999999999999765

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.92  E-value=0.02  Score=47.36  Aligned_cols=94  Identities=16%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      |.+..++++..++ .++|++- ++.|+.++..+.++|++.|.+.-.+  .. +   ....++.++.-+ +.+|++.+|||
T Consensus        94 P~~~~~vi~~a~~-~~i~~iP-G~~TptEi~~a~~~Ga~~vKlFPa~--~~-g---g~~~lk~l~~p~-p~~~~~ptGGV  164 (212)
T PRK05718         94 PGLTPPLLKAAQE-GPIPLIP-GVSTPSELMLGMELGLRTFKFFPAE--AS-G---GVKMLKALAGPF-PDVRFCPTGGI  164 (212)
T ss_pred             CCCCHHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEEccch--hc-c---CHHHHHHHhccC-CCCeEEEeCCC
Confidence            4444467776664 5788775 5789988999999999999994311  11 1   234555555445 46999999998


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .. +++.+.+.+|+.+++.|+.+.
T Consensus       165 ~~-~ni~~~l~ag~v~~vggs~L~  187 (212)
T PRK05718        165 SP-ANYRDYLALPNVLCIGGSWMV  187 (212)
T ss_pred             CH-HHHHHHHhCCCEEEEEChHhC
Confidence            65 899999999965555555544

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.91  E-value=0.011  Score=48.51  Aligned_cols=81  Identities=22%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             cHHHHHHHHHhcCCCE--EEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         52 NWSDVTWLKTITKLPI--VLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv--~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      ..+.|+.+++.++.++  .++.+++.++++.+.++|+|+++..+.          +.+.+.. +...  .++++.  |..
T Consensus        48 ~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~----------~~~v~~~-~~~~--~~~~~~--G~~  112 (206)
T PRK09140         48 PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT----------DPEVIRR-AVAL--GMVVMP--GVA  112 (206)
T ss_pred             HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC----------CHHHHHH-HHHC--CCcEEc--ccC
Confidence            4568999988876454  444568999999999999999976321          2222222 2322  566555  399


Q ss_pred             CHHHHHHHHHhCCCEEEE
Q psy16780        130 YGTDVFKALALGAKMVFV  147 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~i  147 (202)
                      |++++.++..+|||.+.+
T Consensus       113 t~~E~~~A~~~Gad~vk~  130 (206)
T PRK09140        113 TPTEAFAALRAGAQALKL  130 (206)
T ss_pred             CHHHHHHHHHcCCCEEEE
Confidence            999999999999999987

>PRK08227 autoinducer 2 aldolase; Validated

Probab=96.91  E-value=0.015  Score=49.72  Aligned_cols=87  Identities=24%  Similarity=0.323  Sum_probs=58.9

Q ss_pred             HHHHHHHHH---hcCCCEEEEec------cC-H----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         53 WSDVTWLKT---ITKLPIVLKGI------LT-A----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        53 ~~~i~~i~~---~~~~Pv~vK~~------~~-~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .+.+.++.+   .+++|+++ ..      .+ .    ..++.+.+.|||.|.+.-           +-+.+.++.+..  
T Consensus       126 l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y-----------~~~~f~~vv~a~--  191 (264)
T PRK08227        126 IKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY-----------VEEGFERITAGC--  191 (264)
T ss_pred             HHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC-----------CHHHHHHHHHcC--
Confidence            344455444   36999987 32      11 1    236788999999998722           115667776654  


Q ss_pred             CcEEEEecCCCC-HHHHH----HHHHhCCCEEEEcHHHHH
Q psy16780        119 KVDVYLDGGVRY-GTDVF----KALALGAKMVFVGRPALW  153 (202)
Q Consensus       119 ~ipiia~GGI~~-~~D~~----kal~~GAd~V~ig~~~l~  153 (202)
                      .+||+..||=+. .+|++    .++..||.+|.+||-+..
T Consensus       192 ~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ  231 (264)
T PRK08227        192 PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ  231 (264)
T ss_pred             CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence            799999999874 33344    566689999999996653

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=96.90  E-value=0.025  Score=54.98  Aligned_cols=97  Identities=14%  Similarity=0.068  Sum_probs=63.7

Q ss_pred             HHHHHHhcCCCEEEEec-cCHHHHHHHH----Hc---CCcEEEeeccCcCCCC-Cc--cchHHHHHHHHHHhCC-CcEEE
Q psy16780         56 VTWLKTITKLPIVLKGI-LTAEDAKIGV----EM---GASAIMVSNHGGRQLD-YV--PASIEALPEIAKAVGH-KVDVY  123 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~-~~~~~a~~l~----~a---G~d~I~v~~~gg~~~~-~~--~~~~~~l~~i~~~~~~-~ipii  123 (202)
                      ++..|+..+--.+++.+ -+.++++.+.    ..   |+|++.++--..|.-. +.  +..++.+.++++.+.. .+||+
T Consensus        91 ~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~  170 (755)
T PRK09517         91 YTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASV  170 (755)
T ss_pred             HHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEE
Confidence            34445444333455554 4666665432    23   5999998653222211 11  2256777877776621 39999


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +-||| +.+++.+++++||++|.+.+.+..
T Consensus       171 AiGGI-~~~~~~~~~~~Ga~giAvisai~~  199 (755)
T PRK09517        171 AIGGV-GLRNAAELAATGIDGLCVVSAIMA  199 (755)
T ss_pred             EECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence            99999 889999999999999999999874

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.89  E-value=0.0043  Score=56.74  Aligned_cols=68  Identities=25%  Similarity=0.344  Sum_probs=53.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.+....|..    ...++.+.++++.+ +++||++ |++.|.+++..++.+|||+|.+|
T Consensus       226 ~~r~~~L~~aG~d~I~vd~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg  293 (450)
T TIGR01302       226 KERAEALVKAGVDVIVIDSSHGHS----IYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG  293 (450)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCcH----hHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence            467888999999999998754421    22455677777664 4799998 99999999999999999999765

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PLN02417 dihydrodipicolinate synthase

Probab=96.89  E-value=0.0091  Score=51.14  Aligned_cols=94  Identities=17%  Similarity=0.247  Sum_probs=60.3

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|+++|.+.|+.|....-.... .+.+..+.+.+++++||++.=|=.+..|+.+.    -++|||+|++..|
T Consensus        26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P  105 (280)
T PLN02417         26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP  105 (280)
T ss_pred             HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            446778899999999988765322111112 22344556666778999985554455665543    3579999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.   -..+++.++++.+.+
T Consensus       106 ~y~~---~~~~~i~~~f~~va~  124 (280)
T PLN02417        106 YYGK---TSQEGLIKHFETVLD  124 (280)
T ss_pred             ccCC---CCHHHHHHHHHHHHh
Confidence            8753   245666666665544

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=96.87  E-value=0.0079  Score=52.29  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=59.8

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+++|.+.|+.|....-..... +.+..+++.+++++|||+.=|=.+..++.+..    .+|||+|++-.|
T Consensus        33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P  112 (309)
T cd00952          33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP  112 (309)
T ss_pred             HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence            4467788999999999887553221111122 23455566677789999855544556665443    369999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.   -..+++.++++.+.+
T Consensus       113 ~y~~---~~~~~l~~yf~~va~  131 (309)
T cd00952         113 MWLP---LDVDTAVQFYRDVAE  131 (309)
T ss_pred             cCCC---CCHHHHHHHHHHHHH
Confidence            8753   234555555555544

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=96.81  E-value=0.011  Score=51.93  Aligned_cols=69  Identities=22%  Similarity=0.182  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHcC--CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVEMG--ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~aG--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+-++.+.++|  +|.|+++...|.+    ...++.++.+++..+ .. .+..|.|-|++++..++.+|||+|-+|
T Consensus       108 d~er~~~L~~a~~~~d~iviD~AhGhs----~~~i~~ik~ir~~~p-~~-~viaGNV~T~e~a~~Li~aGAD~ikVg  178 (343)
T TIGR01305       108 DLEKMTSILEAVPQLKFICLDVANGYS----EHFVEFVKLVREAFP-EH-TIMAGNVVTGEMVEELILSGADIVKVG  178 (343)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHhhCC-CC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence            456788889885  9999998754432    224556777776653 34 444588999999999999999998776

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.80  E-value=0.013  Score=47.95  Aligned_cols=72  Identities=29%  Similarity=0.258  Sum_probs=54.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...++|++++.+..-.+. .   ....+.+..+++.+  ++||+.-|++++..++..++++|||+|.++.+.+
T Consensus        34 ~~~A~~~~~~GA~~l~v~~~~~~-~---~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~  105 (217)
T cd00331          34 VEIAKAYEKAGAAAISVLTEPKY-F---QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL  105 (217)
T ss_pred             HHHHHHHHHcCCCEEEEEeCccc-c---CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence            37789999999999988543211 1   11335566666655  7999999999999999999999999999887544

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.80  E-value=0.0065  Score=56.34  Aligned_cols=69  Identities=28%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+-++.+.++|+|.|.|....|.+    ....+.++.+++.++.+++|++ |.|.+.+++..++.+|||++-+|
T Consensus       244 ~~ra~~Lv~aGvd~i~vd~a~g~~----~~~~~~i~~ir~~~~~~~~V~a-GnV~t~e~a~~li~aGAd~I~vg  312 (502)
T PRK07107        244 AERVPALVEAGADVLCIDSSEGYS----EWQKRTLDWIREKYGDSVKVGA-GNVVDREGFRYLAEAGADFVKVG  312 (502)
T ss_pred             HHHHHHHHHhCCCeEeecCccccc----HHHHHHHHHHHHhCCCCceEEe-ccccCHHHHHHHHHcCCCEEEEC
Confidence            356788999999999997543321    1235667777776643455554 89999999999999999998774

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=96.78  E-value=0.013  Score=50.47  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|++++.+.|+.|....-... -.+.++.+++.+++++||++.-|-.+..|+++    +.++|||+|++..|
T Consensus        25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP  104 (294)
T TIGR02313        25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP  104 (294)
T ss_pred             HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence            44677889999999998865532211111 12234555666777899997555556666543    34479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      +++.   -..+++.+++..+.+.
T Consensus       105 ~y~~---~~~~~l~~~f~~ia~a  124 (294)
T TIGR02313       105 YYNK---PNQEALYDHFAEVADA  124 (294)
T ss_pred             cCCC---CCHHHHHHHHHHHHHh
Confidence            8763   2345555555555443

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=96.78  E-value=0.015  Score=49.44  Aligned_cols=94  Identities=17%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|+++|.+.|+.|....-.... .+.+..+++..++++||++.-|=.+..++.+.    -.+|||++++..|
T Consensus        22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP  101 (281)
T cd00408          22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP  101 (281)
T ss_pred             HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence            446778899999999988765432222222 23455566666678999985554555555443    3479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.   -+.+++.+++..+.+
T Consensus       102 ~y~~---~~~~~~~~~~~~ia~  120 (281)
T cd00408         102 YYNK---PSQEGIVAHFKAVAD  120 (281)
T ss_pred             cCCC---CCHHHHHHHHHHHHh
Confidence            8763   234555555555444

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=96.77  E-value=0.013  Score=50.84  Aligned_cols=93  Identities=19%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHH---HHHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVYL-DGGVRYGTDVF---KALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipiia-~GGI~~~~D~~---kal~~GAd~V~ig~~  150 (202)
                      +.++.+++.|+|+|.+.|+.|....-... ..+.+..+++.+++++|||+ .|+..+.+-+.   .+-.+|||++++-.|
T Consensus        29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P  108 (299)
T COG0329          29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP  108 (299)
T ss_pred             HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            44678899999999998876632221111 22345556677778999998 44444433332   223379999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      ++..   -.++++.+.+..+.
T Consensus       109 yY~k---~~~~gl~~hf~~ia  126 (299)
T COG0329         109 YYNK---PSQEGLYAHFKAIA  126 (299)
T ss_pred             CCcC---CChHHHHHHHHHHH
Confidence            8863   22344444444443

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.023  Score=46.64  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             cHHHHHHHHHhcCCCEE--EEec---------cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         52 NWSDVTWLKTITKLPIV--LKGI---------LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~--vK~~---------~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ..+.|+++++.+++|+|  +|--         .+.+++..+.++|++.|.++.+-....++   +++   ++.+..+ .-
T Consensus        54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~---~~i~~~k-~~  126 (229)
T COG3010          54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLE---ELIARIK-YP  126 (229)
T ss_pred             chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHH---HHHHHhh-cC
Confidence            67899999999999996  4421         35799999999999999998754322221   333   2222211 12


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      -.++.-.+.|.+|..-|..+|+|.|+-
T Consensus       127 ~~l~MAD~St~ee~l~a~~~G~D~IGT  153 (229)
T COG3010         127 GQLAMADCSTFEEGLNAHKLGFDIIGT  153 (229)
T ss_pred             CcEEEeccCCHHHHHHHHHcCCcEEec
Confidence            245555789999999999999999853

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=96.73  E-value=0.035  Score=45.62  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhcCCCEEEEe--------c---cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         53 WSDVTWLKTITKLPIVLKG--------I---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~--------~---~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      .+.++++++.+++|++...        .   .+.++++.+.++|+|.|.+........+ +....+.+..+++.  ..+|
T Consensus        45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~-~~~~~~~i~~~~~~--~~i~  121 (221)
T PRK01130         45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPD-GETLAELVKRIKEY--PGQL  121 (221)
T ss_pred             HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCC-CCCHHHHHHHHHhC--CCCe
Confidence            6899999999999987321        1   2357899999999998887653211000 01112334444332  3678


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        122 VYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      ++.  ++.+.+++.++..+|+|.+.++
T Consensus       122 vi~--~v~t~ee~~~a~~~G~d~i~~~  146 (221)
T PRK01130        122 LMA--DCSTLEEGLAAQKLGFDFIGTT  146 (221)
T ss_pred             EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence            775  5789999999999999999774

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.72  E-value=0.012  Score=51.66  Aligned_cols=69  Identities=20%  Similarity=0.181  Sum_probs=51.6

Q ss_pred             CHHHHHHHHH--cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVE--MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~--aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+-++.+.+  +|+|.|+++...|.+    ....+.++.+++.+ ++++||+ |.|-|++-+...+.+|||+|=+|
T Consensus       109 d~er~~~L~~~~~g~D~iviD~AhGhs----~~~i~~ik~ik~~~-P~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG  179 (346)
T PRK05096        109 DFEKTKQILALSPALNFICIDVANGYS----EHFVQFVAKAREAW-PDKTICA-GNVVTGEMVEELILSGADIVKVG  179 (346)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHHhC-CCCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence            3566777888  599999998754432    23455677787766 4677776 99999999999999999987543

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=96.72  E-value=0.016  Score=50.78  Aligned_cols=95  Identities=16%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cCH----HHHHHHHHcCCcEEEeecc--Cc-CCCCCcc---chHHHHHHHHHHhCCCcE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNH--GG-RQLDYVP---ASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~--gg-~~~~~~~---~~~~~l~~i~~~~~~~ip  121 (202)
                      .+.++.+++..++||++++. .+.    +.++.+.++|+|+|.+.-.  .+ ....+..   ...+.+..+++.+  ++|
T Consensus        90 ~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iP  167 (334)
T PRK07565         90 LELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIP  167 (334)
T ss_pred             HHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCc
Confidence            44666677777899999985 333    4567788899999998431  11 1111111   1234455665555  689


Q ss_pred             EEEe--cCCCCHHHHHHHHH-hCCCEEEEcH
Q psy16780        122 VYLD--GGVRYGTDVFKALA-LGAKMVFVGR  149 (202)
Q Consensus       122 iia~--GGI~~~~D~~kal~-~GAd~V~ig~  149 (202)
                      |++-  +++.+..++++++. .|+|+|.+..
T Consensus       168 V~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n  198 (334)
T PRK07565        168 VAVKLSPYFSNLANMAKRLDAAGADGLVLFN  198 (334)
T ss_pred             EEEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence            9984  55556778888765 8999887744

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=96.72  E-value=0.013  Score=50.48  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+.+.|+|++.+.|+.|....-...... .+..+++.+++++||++.=| .+..++++..    .+|||++++-.|
T Consensus        30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP  108 (296)
T TIGR03249        30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPP  108 (296)
T ss_pred             HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCC
Confidence            44677889999999998876543222222222 34555666777899998555 3455555433    379999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      +++.   -..+++.++++.+.+.
T Consensus       109 ~y~~---~s~~~i~~~f~~v~~a  128 (296)
T TIGR03249       109 YLIN---GEQEGLYAHVEAVCES  128 (296)
T ss_pred             CCCC---CCHHHHHHHHHHHHhc
Confidence            8753   2345555555555443

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=96.71  E-value=0.023  Score=48.26  Aligned_cols=87  Identities=25%  Similarity=0.279  Sum_probs=59.7

Q ss_pred             HHHHHH-HHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         76 EDAKIG-VEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        76 ~~a~~l-~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +.++.+ ...++|+|+|+|..    .+.+++.+.+.++++.+  .+||+..+|+ |.+.+.+.+.. ||++.+||.|-..
T Consensus       162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~  233 (254)
T PF03437_consen  162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKD  233 (254)
T ss_pred             HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeC
Confidence            445555 57899999998742    12366788888888877  3999998885 67888887755 9999999987532


Q ss_pred             hhhc---ChHHHHHHHHHH
Q psy16780        155 LAHS---GKSGVRKVLDIL  170 (202)
Q Consensus       155 ~~~~---G~~~v~~~i~~l  170 (202)
                      =...   .++.+.++++..
T Consensus       234 G~~~n~VD~~Rv~~fm~~v  252 (254)
T PF03437_consen  234 GKWENPVDPERVRRFMEAV  252 (254)
T ss_pred             CEeCCcCCHHHHHHHHHHh
Confidence            0001   135566555543

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=96.70  E-value=0.016  Score=49.91  Aligned_cols=93  Identities=10%  Similarity=0.119  Sum_probs=57.7

Q ss_pred             HHHHHHHHcC-CcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMG-ASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG-~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~  149 (202)
                      +.++.+++.| +++|.+.|+.|....-..... +.+..+++..++++||++.=|=.+..|+++.    -.+|||+|++..
T Consensus        25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~  104 (290)
T TIGR00683        25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT  104 (290)
T ss_pred             HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence            4467788999 999999887664322222222 2345556666778999885333344554433    347999999999


Q ss_pred             HHHHHhhhcChHHHHHHHHHHH
Q psy16780        150 PALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       150 ~~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      |+++.   ...+++.++++.+.
T Consensus       105 P~y~~---~~~~~i~~yf~~v~  123 (290)
T TIGR00683       105 PFYYK---FSFPEIKHYYDTII  123 (290)
T ss_pred             CcCCC---CCHHHHHHHHHHHH
Confidence            98753   23455555555543

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=96.69  E-value=0.018  Score=47.11  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc------------------------CcCCC------
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH------------------------GGRQL------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~------------------------gg~~~------   99 (202)
                      ..+.++++++.+++|+=+=+ +.+| ..++.+.++|+|.|.++--                        .+|..      
T Consensus        45 g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~  124 (201)
T PF00834_consen   45 GPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPY  124 (201)
T ss_dssp             -HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTT
T ss_pred             CHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHH
Confidence            46799999999888887664 3344 5578888999998888521                        01110      


Q ss_pred             ---------------CCcc----chHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        100 ---------------DYVP----ASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       100 ---------------~~~~----~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                                     .+|.    ...+-++++++..   +.++.|..+|||+. +.+.++.++|||.+.+||.+.
T Consensus       125 l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF  198 (201)
T PF00834_consen  125 LDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF  198 (201)
T ss_dssp             GCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred             hhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence                           1222    2334444444332   34699999999976 478888899999999999865

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.65  E-value=0.01  Score=54.80  Aligned_cols=68  Identities=25%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.+..+.|.    +....+.++++++.+ ++++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus       229 ~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~-p~~~v~a-gnv~t~~~a~~l~~aGad~v~vg  296 (479)
T PRK07807        229 AAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALD-PGVPIVA-GNVVTAEGTRDLVEAGADIVKVG  296 (479)
T ss_pred             HHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHC-CCCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence            36678899999999999875443    233556778887766 3687877 89999999999999999997633

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.62  E-value=0.012  Score=54.32  Aligned_cols=68  Identities=24%  Similarity=0.310  Sum_probs=53.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+-++.+.++|+|.|.++.+.|+.    ....+.++.+++.+ .++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus       227 ~~ra~~Lv~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg  294 (475)
T TIGR01303       227 GGKAKALLDAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG  294 (475)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence            466888999999999998754542    23455677777654 4799999 77999999999999999998754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=96.61  E-value=0.037  Score=47.41  Aligned_cols=87  Identities=22%  Similarity=0.268  Sum_probs=64.0

Q ss_pred             HHHHHHHHhcCC-CEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH--hCCCcEEEEecCCCC
Q psy16780         54 SDVTWLKTITKL-PIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA--VGHKVDVYLDGGVRY  130 (202)
Q Consensus        54 ~~i~~i~~~~~~-Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipiia~GGI~~  130 (202)
                      +.+++.|+..+. |-+-=++-+.+++..+.++|+|.|-++|.          +.+.++++.+.  .++++-+=+|||| +
T Consensus       176 ~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgI-t  244 (280)
T COG0157         176 EAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGI-T  244 (280)
T ss_pred             HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCC-C
Confidence            477777776543 21222468999999999999999999885          23444554444  4557888889997 5


Q ss_pred             HHHHHHHHHhCCCEEEEcHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~  151 (202)
                      .+.+......|.|.+.+|.+-
T Consensus       245 ~~ni~~yA~tGVD~IS~galt  265 (280)
T COG0157         245 LENIREYAETGVDVISVGALT  265 (280)
T ss_pred             HHHHHHHhhcCCCEEEeCccc
Confidence            688888888999999999754

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.59  E-value=0.024  Score=49.86  Aligned_cols=68  Identities=21%  Similarity=0.141  Sum_probs=50.0

Q ss_pred             HHHHHHHHHcCC--cEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGA--SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~--d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.+..+.++|+  |.|.++...|.    .....+.+.++++.. +++|||+ |.|.|.+++..++.+|||++.+|
T Consensus        99 ~~~~~~Lv~ag~~~d~i~iD~a~gh----~~~~~e~I~~ir~~~-p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg  168 (326)
T PRK05458         99 YDFVDQLAAEGLTPEYITIDIAHGH----SDSVINMIQHIKKHL-PETFVIA-GNVGTPEAVRELENAGADATKVG  168 (326)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCc----hHHHHHHHHHHHhhC-CCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence            366788899965  99999764331    123445577777665 3477666 66889999999999999998876

>TIGR02134 transald_staph transaldolase

Probab=96.58  E-value=0.1  Score=43.83  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHH---HHHcC-CcEEEeeccCcCCCCCccchHHHHHHHHHHhC--CCcEEEEec
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKI---GVEMG-ASAIMVSNHGGRQLDYVPASIEALPEIAKAVG--HKVDVYLDG  126 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~---l~~aG-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipiia~G  126 (202)
                      .+.++.+++. ++++-+-.+.++.++..   +..+| +++|...  -||--|.+......+.++++.+.  .+..|++.+
T Consensus       102 l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yispf--vgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS  178 (236)
T TIGR02134       102 GPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSVF--AGRIADTGVDPEPHMREALEIVAQKPGVELLWAS  178 (236)
T ss_pred             HHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEEe--cchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3445555443 77887777788888776   44589 5887763  34433333333344444433331  367777765


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                       +|+..++.++..+|||.+-+.-.++..+.
T Consensus       179 -~R~~~~v~~a~~~Gad~vTvp~~v~~~l~  207 (236)
T TIGR02134       179 -PRELFNIIQADRIGCDIITCAHDILAKLP  207 (236)
T ss_pred             -cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence             99999999999999999999988887653

This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.56  E-value=0.066  Score=43.94  Aligned_cols=92  Identities=15%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             cHHHHHHHHHhcCCCEEE---Eec--------cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         52 NWSDVTWLKTITKLPIVL---KGI--------LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~v---K~~--------~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ..+.++++++.+++|++.   |..        .+.++++.+.++|+|.|.+.....+. ..+....+.+..+++..  ++
T Consensus        48 ~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-p~~~~~~~~i~~~~~~g--~~  124 (219)
T cd04729          48 GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-PDGETLAELIKRIHEEY--NC  124 (219)
T ss_pred             CHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCcCHHHHHHHHHHHh--CC
Confidence            457889998888999863   221        23568899999999988775422110 00012223445554443  57


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      |++.  ++.|.+++..+..+|+|.+.+.
T Consensus       125 ~iiv--~v~t~~ea~~a~~~G~d~i~~~  150 (219)
T cd04729         125 LLMA--DISTLEEALNAAKLGFDIIGTT  150 (219)
T ss_pred             eEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence            7776  6899999999999999998653

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=96.53  E-value=0.027  Score=48.25  Aligned_cols=94  Identities=16%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+.+.|++++.+.|+.|....-..... +.+..+++.+++++||++.=|=.+.+++++..    .+|||+|++..|
T Consensus        23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP  102 (285)
T TIGR00674        23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP  102 (285)
T ss_pred             HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            4467788999999999776554322112222 23455566667789999844444555554333    369999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.   -..+.+.++++.+.+
T Consensus       103 ~y~~---~~~~~i~~~~~~i~~  121 (285)
T TIGR00674       103 YYNK---PTQEGLYQHFKAIAE  121 (285)
T ss_pred             cCCC---CCHHHHHHHHHHHHh
Confidence            8753   234555555555443

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=96.52  E-value=0.091  Score=43.93  Aligned_cols=97  Identities=9%  Similarity=0.051  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCCCEEEEec----cCHHHHHHHHHcCCcEEEeec-cCcCC-CCCccchHHHHHHHHHHhC---CCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI----LTAEDAKIGVEMGASAIMVSN-HGGRQ-LDYVPASIEALPEIAKAVG---HKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~----~~~~~a~~l~~aG~d~I~v~~-~gg~~-~~~~~~~~~~l~~i~~~~~---~~ipii  123 (202)
                      .+.+++||+. +.++-+++.    ...+.++.+++. +|.|.+=. .+|.. ....+...+-+.++++...   .++.|-
T Consensus       106 ~~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~Ie  183 (228)
T PRK08091        106 ALTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLIS  183 (228)
T ss_pred             HHHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEE
Confidence            4578888865 554444444    345777777664 88887643 22211 1112233444555444332   257799


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+|||+ .+.+.++.++|||.+.+||++.
T Consensus       184 VDGGI~-~~ti~~l~~aGaD~~V~GSalF  211 (228)
T PRK08091        184 IDGSMT-LELASYLKQHQIDWVVSGSALF  211 (228)
T ss_pred             EECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence            999997 5688899999999999999864

>PRK08185 hypothetical protein; Provisional

Probab=96.52  E-value=0.12  Score=44.49  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHc-CCcEEEeecc--CcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEE
Q psy16780         74 TAEDAKIGVEM-GASAIMVSNH--GGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFV  147 (202)
Q Consensus        74 ~~~~a~~l~~a-G~d~I~v~~~--gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~i  147 (202)
                      ++++++...+. |+|++.++-+  +|.-..+..  -+++.|.++++.+  ++|+++-||... .+++.+++.+|..=|-+
T Consensus       150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi  227 (283)
T PRK08185        150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKINI  227 (283)
T ss_pred             CHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence            67888888876 9999998542  121111112  2577889998877  799999999865 46677799999999999


Q ss_pred             cHHHHHHh----h---hcCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        148 GRPALWGL----A---HSGK------SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       148 g~~~l~~~----~---~~G~------~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      +|.+-.+.    .   .+.+      .-.....+.+.+.++..|..+|..
T Consensus       228 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~  277 (283)
T PRK08185        228 SSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST  277 (283)
T ss_pred             ChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99655431    1   0111      223344456777777888888764

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=96.51  E-value=0.029  Score=49.16  Aligned_cols=67  Identities=19%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             HHHHHHHHcC--CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         76 EDAKIGVEMG--ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        76 ~~a~~l~~aG--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+..+.++|  +|.|+++...|.+    ..-++.++.+++..  ..|.+..|.|.+.+++..++.+|||+|-+|
T Consensus        97 ~r~~~lv~a~~~~d~i~~D~ahg~s----~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~  165 (321)
T TIGR01306        97 EFVTQLAEEALTPEYITIDIAHGHS----NSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG  165 (321)
T ss_pred             HHHHHHHhcCCCCCEEEEeCccCch----HHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence            5567788999  7999998754421    23455677777766  568888899999999999999999999877

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=96.48  E-value=0.023  Score=48.85  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             HHHHHHHH-cCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcH
Q psy16780         76 EDAKIGVE-MGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~-aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~  149 (202)
                      +.++.+.+ .|+++|.+.|+.|....-.... ...+..+++.+++++|||+.=|=.+..++++.    -.+|||+|++..
T Consensus        28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~  107 (293)
T PRK04147         28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT  107 (293)
T ss_pred             HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence            44677888 9999999988766432211222 22345556667778999995454556666543    357999999999


Q ss_pred             HHHHHhhhcChHHHHHHHHHHH
Q psy16780        150 PALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       150 ~~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      |+++.   ...+++.++++.+.
T Consensus       108 P~y~~---~~~~~l~~~f~~va  126 (293)
T PRK04147        108 PFYYP---FSFEEICDYYREII  126 (293)
T ss_pred             CcCCC---CCHHHHHHHHHHHH
Confidence            98753   12344444444443

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=96.45  E-value=0.025  Score=48.55  Aligned_cols=95  Identities=15%  Similarity=0.104  Sum_probs=58.5

Q ss_pred             HHHHHHHHc-CCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcH
Q psy16780         76 EDAKIGVEM-GASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~a-G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~  149 (202)
                      ..++.+.+. |++++.+.|+.|....-.... .+.++.+++.+.+++|||+.=|=.+..++.+    +..+|||++++..
T Consensus        25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~  104 (288)
T cd00954          25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT  104 (288)
T ss_pred             HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence            446778889 999999988765432111112 2234555666677899998333234444443    3347999999999


Q ss_pred             HHHHHhhhcChHHHHHHHHHHHHH
Q psy16780        150 PALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       150 ~~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      |+++.   -..+++.++++.+.+.
T Consensus       105 P~y~~---~~~~~i~~~~~~v~~a  125 (288)
T cd00954         105 PFYYK---FSFEEIKDYYREIIAA  125 (288)
T ss_pred             CCCCC---CCHHHHHHHHHHHHHh
Confidence            98753   2345555555555443

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=96.44  E-value=0.047  Score=46.17  Aligned_cols=71  Identities=25%  Similarity=0.219  Sum_probs=55.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.|+...++||.+|.|-.-+  .+.  ..+.+.+..+++.+  ++||+.-+.|-++.++.++..+|||+|.+=-.++
T Consensus        65 ~~A~~y~~~GA~aISVlTe~--~~F--~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L  135 (247)
T PRK13957         65 QIAKTYETLGASAISVLTDQ--SYF--GGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL  135 (247)
T ss_pred             HHHHHHHHCCCcEEEEEcCC--CcC--CCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence            66888999999999875421  111  12567777787777  8999999999999999999999999997765554

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=96.43  E-value=0.029  Score=47.85  Aligned_cols=94  Identities=15%  Similarity=0.219  Sum_probs=57.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|++++.+.|+.|....-..... +.+..+++.+.+++||++.=|=.+..++++.    -.+|||+|++..|
T Consensus        25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P  104 (284)
T cd00950          25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP  104 (284)
T ss_pred             HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence            4467889999999999876553322112222 2344556666678998873333455555543    3479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      .++.   -..+.+.++++.+.+
T Consensus       105 ~~~~---~~~~~l~~~~~~ia~  123 (284)
T cd00950         105 YYNK---PSQEGLYAHFKAIAE  123 (284)
T ss_pred             ccCC---CCHHHHHHHHHHHHh
Confidence            7653   234545555555443

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=96.40  E-value=0.019  Score=49.13  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=55.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|++++.+.|+.|....-..... +.+..+++.+++++||++.=|=.+-.++++..    .+|||++++..|
T Consensus        26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P  105 (289)
T PF00701_consen   26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP  105 (289)
T ss_dssp             HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred             HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence            4567788999999999887653222112222 23445566677789999843434555554433    379999999998


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      ++..   -..+++.++++.+
T Consensus       106 ~~~~---~s~~~l~~y~~~i  122 (289)
T PF00701_consen  106 YYFK---PSQEELIDYFRAI  122 (289)
T ss_dssp             TSSS---CCHHHHHHHHHHH
T ss_pred             cccc---chhhHHHHHHHHH
Confidence            7642   2344444444443

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=96.38  E-value=0.043  Score=45.24  Aligned_cols=96  Identities=22%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.++-++++... ..++|++- ++.|+.++..+.++|++.+.+.-...   .+++   ..+..+. .-...++++.+||
T Consensus        91 sP~~~~ev~~~a~-~~~ip~~P-G~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~---~~~ka~~-gP~~~v~~~pTGG  161 (211)
T COG0800          91 SPGLNPEVAKAAN-RYGIPYIP-GVATPTEIMAALELGASALKFFPAEV---VGGP---AMLKALA-GPFPQVRFCPTGG  161 (211)
T ss_pred             CCCCCHHHHHHHH-hCCCcccC-CCCCHHHHHHHHHcChhheeecCccc---cCcH---HHHHHHc-CCCCCCeEeecCC
Confidence            4555556666555 45888875 68999999999999999999864311   1111   2222221 1224699999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |.. ..+.+.+++|+.+|++|+.+..
T Consensus       162 Vs~-~N~~~yla~gv~avG~Gs~l~~  186 (211)
T COG0800         162 VSL-DNAADYLAAGVVAVGLGSWLVP  186 (211)
T ss_pred             CCH-HHHHHHHhCCceEEecCccccC
Confidence            865 5999999999999999998774

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=96.34  E-value=0.024  Score=47.05  Aligned_cols=72  Identities=25%  Similarity=0.228  Sum_probs=55.5

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH--hCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA--LGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~--~GAd~V~ig~~~l  152 (202)
                      .+.|+...+.|+|.+.+.--.+.  .+.+.+.+.+.++++.    +|+...|||||.+|+.+++.  .||+-|.+||..+
T Consensus        39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~  112 (221)
T TIGR00734        39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL  112 (221)
T ss_pred             HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence            47788889999999987543222  1345567778887663    58999999999999999866  2799999999755

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=96.32  E-value=0.14  Score=44.17  Aligned_cols=110  Identities=14%  Similarity=0.115  Sum_probs=74.8

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG  148 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig  148 (202)
                      .+|++|+... +.|+|.+-++-+.-...+.+.|  +++.|.++++.+  ++|++.-||=..+ +++.+++.+|..=|-++
T Consensus       156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~  233 (285)
T PRK07709        156 ADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVN  233 (285)
T ss_pred             CCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence            3688888876 5899999887532222222333  567789998887  8999999987665 77888999999999999


Q ss_pred             HHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      |.+-.+..       ...      ..-.....+.+++.++..|..+|..
T Consensus       234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~  282 (285)
T PRK07709        234 TENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN  282 (285)
T ss_pred             hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            96543311       011      1223344456677777777777754

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=96.23  E-value=0.038  Score=47.42  Aligned_cols=94  Identities=15%  Similarity=0.192  Sum_probs=57.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+.+.|++++.+.|+.|....-..... +.+..+++.+++++||++.=|=.+..++++..    .+|||+|++..|
T Consensus        26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP  105 (292)
T PRK03170         26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP  105 (292)
T ss_pred             HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence            4467788999999999776553322122222 23455666677789988733333444544332    379999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.   -+.+++.++++.+.+
T Consensus       106 ~~~~---~~~~~i~~~~~~ia~  124 (292)
T PRK03170        106 YYNK---PTQEGLYQHFKAIAE  124 (292)
T ss_pred             cCCC---CCHHHHHHHHHHHHh
Confidence            8753   234555555555543

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=96.18  E-value=0.076  Score=45.23  Aligned_cols=91  Identities=19%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             HHHHHHHHhcCCCEEEEe---ccCHHHHHHHHHcC-CcEEEeeccCcCCCCCccchHHHHHHHHHHh-------CCCcEE
Q psy16780         54 SDVTWLKTITKLPIVLKG---ILTAEDAKIGVEMG-ASAIMVSNHGGRQLDYVPASIEALPEIAKAV-------GHKVDV  122 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~---~~~~~~a~~l~~aG-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-------~~~ipi  122 (202)
                      +.++.+++..+.|...|.   ..+.+++..+.++| +|+|.+++.+.       ...+....+.+..       .+++-+
T Consensus       170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i  242 (281)
T cd00516         170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSP-------EELDPAVLILKARAHLDGKGLPRVKI  242 (281)
T ss_pred             HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCCh-------HHHHHHHHHHHHHHhhhhcCCCceEE
Confidence            466777766543355553   25688888999999 99999977432       1112111111111       136889


Q ss_pred             EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        123 YLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ++||||. .+.+......|.|.+++|+.+.
T Consensus       243 ~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~  271 (281)
T cd00516         243 EASGGLD-EENIRAYAETGVDVFGVGTLLH  271 (281)
T ss_pred             EEeCCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence            9999997 8888888889999999999775

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>PRK06852 aldolase; Validated

Probab=96.15  E-value=0.11  Score=45.34  Aligned_cols=96  Identities=19%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             HHHHHHHHHh---cCCCEEEEec---------cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         53 WSDVTWLKTI---TKLPIVLKGI---------LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        53 ~~~i~~i~~~---~~~Pv~vK~~---------~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      ++.+.++.+.   +++|+++-.-         .++    ..++.+.+.|||.|.+--.+    +.+..+.+.+.++.+..
T Consensus       153 l~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~  228 (304)
T PRK06852        153 LSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA  228 (304)
T ss_pred             HHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC
Confidence            4445555444   5899986221         122    23578899999999984321    00012345666665543


Q ss_pred             CCCcEEEEecCCCC-HHHHH----HHHH-hCCCEEEEcHHHHH
Q psy16780        117 GHKVDVYLDGGVRY-GTDVF----KALA-LGAKMVFVGRPALW  153 (202)
Q Consensus       117 ~~~ipiia~GGI~~-~~D~~----kal~-~GAd~V~ig~~~l~  153 (202)
                       +.+||+.+||=+. .+|++    .++. .||.+|.+||-...
T Consensus       229 -g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ  270 (304)
T PRK06852        229 -GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQ  270 (304)
T ss_pred             -CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence             3699999999874 33444    4556 79999999997653

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.10  E-value=0.03  Score=51.72  Aligned_cols=68  Identities=25%  Similarity=0.335  Sum_probs=52.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.+++....|..    ...++.+..+++.. +++||++ |++.|.+++..++.+|||+|.+|
T Consensus       230 ~e~a~~L~~agvdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg  297 (486)
T PRK05567        230 EERAEALVEAGVDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG  297 (486)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence            577899999999998886533321    12344566666654 3688888 99999999999999999999775

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.04  E-value=0.22  Score=42.91  Aligned_cols=109  Identities=16%  Similarity=0.135  Sum_probs=74.2

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc-chHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEcHH
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP-ASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig~~  150 (202)
                      ++++++... +.|+|.+-++-+.-...+.+| .+++.+.++++.+  ++|++.-||=..+ +++.+++.+|+.-|-++|.
T Consensus       154 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te  231 (283)
T PRK07998        154 EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASD  231 (283)
T ss_pred             CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHH
Confidence            678887765 699999988753212222222 2567889998877  8999999987665 7778899999999999997


Q ss_pred             HHHHh----h---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        151 ALWGL----A---HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       151 ~l~~~----~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      +..+.    .   ...      ..-.....+.+++..+..|..+|..
T Consensus       232 l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  278 (283)
T PRK07998        232 LRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN  278 (283)
T ss_pred             HHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            65431    1   011      1123344456777788888888764

>cd00945 Aldolase_Class_I Class I aldolases

Probab=96.02  E-value=0.11  Score=41.04  Aligned_cols=65  Identities=23%  Similarity=0.117  Sum_probs=46.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC-CcEEEE-ecCCC-------CHHHHHHHHHhCCCEEE
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH-KVDVYL-DGGVR-------YGTDVFKALALGAKMVF  146 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipiia-~GGI~-------~~~D~~kal~~GAd~V~  146 (202)
                      +.++.+.+.|+++|.+.+             ..+..+++..++ ++|+++ .|.-.       +.+.+.++..+|||+++
T Consensus        17 ~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~   83 (201)
T cd00945          17 KLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID   83 (201)
T ss_pred             HHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence            446778899999998854             445666666666 799887 34333       23455566778999999


Q ss_pred             EcHHHHH
Q psy16780        147 VGRPALW  153 (202)
Q Consensus       147 ig~~~l~  153 (202)
                      +..++..
T Consensus        84 v~~~~~~   90 (201)
T cd00945          84 VVINIGS   90 (201)
T ss_pred             EeccHHH
Confidence            9887765

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=96.00  E-value=0.3  Score=42.19  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=72.8

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~  149 (202)
                      +|++|+... +.|+|.+-++-+.-...+.+.  -+++.|.++++.+  ++|++.-||=.. .+++.+++.+|..=|-++|
T Consensus       156 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T  233 (286)
T PRK12738        156 DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVAT  233 (286)
T ss_pred             CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            688888776 479999988753222222222  3677899998888  899999886433 5778889999999999999


Q ss_pred             HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      .+-.+..       ...      ..-.....+.+++-++..|..+|..
T Consensus       234 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  281 (286)
T PRK12738        234 ELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA  281 (286)
T ss_pred             HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7654321       011      1223344455677777777777754

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=95.89  E-value=0.023  Score=47.43  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ...|+|.-|||||++.+.+...+|||.+..|+.+..
T Consensus       190 ~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee  225 (240)
T COG1646         190 SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE  225 (240)
T ss_pred             ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence            356999999999999999999999999999987653

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=95.89  E-value=0.35  Score=42.16  Aligned_cols=109  Identities=13%  Similarity=0.062  Sum_probs=73.1

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCC--cc--chHHHHHHHHHHhCCCcEEEEecCCCCHH----------------
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDY--VP--ASIEALPEIAKAVGHKVDVYLDGGVRYGT----------------  132 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~--~~--~~~~~l~~i~~~~~~~ipiia~GGI~~~~----------------  132 (202)
                      +|++|+... +.|+|.+-++-+.-...+.  +.  -+++.|.++++.+  ++|++.-||=..++                
T Consensus       156 dPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~~  233 (307)
T PRK05835        156 NPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKGS  233 (307)
T ss_pred             CHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccccc
Confidence            578888876 5799998886532112221  23  3677899998887  89999999766665                


Q ss_pred             ------HHHHHHHhCCCEEEEcHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        133 ------DVFKALALGAKMVFVGRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       133 ------D~~kal~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                            ++.+++.+|..=|-+++.+..+..       ...      ..-.....+.+++-.+..|..+|..
T Consensus       234 ~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  304 (307)
T PRK05835        234 KGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA  304 (307)
T ss_pred             cCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  799999999999999997654311       011      1123334455666677777777753

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=95.89  E-value=0.072  Score=46.31  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             HHHHHHHHhcC--CCEEEEeccCH----HHHHHHHHc---CCcEEEeeccCcCCCCCccchHHHHHHHHHH---hC-CCc
Q psy16780         54 SDVTWLKTITK--LPIVLKGILTA----EDAKIGVEM---GASAIMVSNHGGRQLDYVPASIEALPEIAKA---VG-HKV  120 (202)
Q Consensus        54 ~~i~~i~~~~~--~Pv~vK~~~~~----~~a~~l~~a---G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~-~~i  120 (202)
                      +.++..++..+  .|+.+ ++-+.    .++..+.++   ++|.|.+++.+++  .+.  +.+.+.++++.   .+ +++
T Consensus       172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~G~--~~~~~~~~~~~l~~~g~~~~  246 (302)
T cd01571         172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--RGV--FRYLIREVRWALDIRGYKHV  246 (302)
T ss_pred             HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--CCC--HHHHHHHHHHHHHhCCCCCe
Confidence            46677777664  56665 44333    345555555   4899999885431  111  22333444333   32 468


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .|++|||| +.+.+.+....|+|.+.+|+.+..
T Consensus       247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~  278 (302)
T cd01571         247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK  278 (302)
T ss_pred             EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence            89999999 889999998999999999997653

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.87  E-value=0.17  Score=42.81  Aligned_cols=96  Identities=24%  Similarity=0.254  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc---cchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV---PASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .+.++++.+ ++.||++|-.  .++++    ++.+.+.|..-|.+--+|-+.....   ..++..+..+++..  .+|||
T Consensus       112 ~~LL~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVi  188 (250)
T PRK13397        112 FEFLKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPII  188 (250)
T ss_pred             HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeE
Confidence            556777664 4899999965  46555    4566778887666653332222211   34556677776655  68999


Q ss_pred             Ee----cCCCC--HHHHHHHHHhCCCEEEEcHHH
Q psy16780        124 LD----GGVRY--GTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       124 a~----GGI~~--~~D~~kal~~GAd~V~ig~~~  151 (202)
                      .+    +|.|.  ..-...|+++|||++++=+.+
T Consensus       189 vd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~  222 (250)
T PRK13397        189 VDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP  222 (250)
T ss_pred             ECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence            85    45444  233556778999999987644

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=95.86  E-value=0.35  Score=41.72  Aligned_cols=109  Identities=16%  Similarity=0.191  Sum_probs=72.0

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~  149 (202)
                      +|++++... +.|+|.+-++.+.-...+.+.  -+++.|.++++.+  ++|++.-||=.. -+++.+++..|..=|-++|
T Consensus       156 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T  233 (284)
T PRK09195        156 DPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNVAT  233 (284)
T ss_pred             CHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            678888876 479999988753211222222  3667899998887  799999886433 4678889999999999999


Q ss_pred             HHHHHhh-------hcCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        150 PALWGLA-------HSGK------SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       150 ~~l~~~~-------~~G~------~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      .+..+..       ...+      .-.....+.+++..+..|..+|..
T Consensus       234 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  281 (284)
T PRK09195        234 ELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE  281 (284)
T ss_pred             HHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7653311       0111      113334455667777777777753

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=95.80  E-value=0.091  Score=44.18  Aligned_cols=97  Identities=16%  Similarity=0.186  Sum_probs=54.7

Q ss_pred             HHHHHHHHhcCCCEEEEecc---C----HHHHHHHHHcCCcEEEeeccC-----cCCCC-Cccch---HHHHHHHHHHhC
Q psy16780         54 SDVTWLKTITKLPIVLKGIL---T----AEDAKIGVEMGASAIMVSNHG-----GRQLD-YVPAS---IEALPEIAKAVG  117 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~---~----~~~a~~l~~aG~d~I~v~~~g-----g~~~~-~~~~~---~~~l~~i~~~~~  117 (202)
                      +.++.|...+++||++=.-.   +    .+.++.+.++|+++|.+-...     |.... ...+.   .+.+..++++..
T Consensus        59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~  138 (243)
T cd00377          59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD  138 (243)
T ss_pred             HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence            35566666678998886543   3    344678889999999994321     10000 01122   223444444444


Q ss_pred             C--CcEEEEe-----cCCCCHHHHH---H-HHHhCCCEEEEcHH
Q psy16780        118 H--KVDVYLD-----GGVRYGTDVF---K-ALALGAKMVFVGRP  150 (202)
Q Consensus       118 ~--~ipiia~-----GGI~~~~D~~---k-al~~GAd~V~ig~~  150 (202)
                      .  +++|++=     -|-.+.++++   + +.++|||++++-.+
T Consensus       139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~  182 (243)
T cd00377         139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL  182 (243)
T ss_pred             ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            4  7888885     2112333443   2 23479999998643

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=95.74  E-value=0.4  Score=41.44  Aligned_cols=110  Identities=13%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG  148 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig  148 (202)
                      .+|++++... +.|+|.+-++-+.-...+.+.|  +++.|.++++.+  ++|++.-||=..+ +++.+++..|..=|-++
T Consensus       156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~  233 (286)
T PRK08610        156 ADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINVN  233 (286)
T ss_pred             CCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence            3688888876 5799999987532222222333  567789998887  8999999987666 67788999999999999


Q ss_pred             HHHHHH----hh---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWG----LA---HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~----~~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      +.+-.+    +.   ...      ..-.....+.+++.++..|..+|..
T Consensus       234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~  282 (286)
T PRK08610        234 TENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS  282 (286)
T ss_pred             cHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            976432    11   011      1113334455666777777777754

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=95.70  E-value=0.16  Score=43.86  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             HHHHHHhcCCCEEEEecc--CH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         56 VTWLKTITKLPIVLKGIL--TA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~~--~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+.+++..+.|+++.+..  ++    +.++.+.+.|+++|.++..-  ...+....++.+.++++.+  ++||+.- ++.
T Consensus       107 ~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~--p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~  181 (299)
T cd02809         107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDT--PVLGRRLTWDDLAWLRSQW--KGPLILK-GIL  181 (299)
T ss_pred             HHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCC--CCCCCCCCHHHHHHHHHhc--CCCEEEe-ecC
Confidence            445555555788877642  33    34667788999999985421  1111113567788887776  6898885 589


Q ss_pred             CHHHHHHHHHhCCCEEEEc
Q psy16780        130 YGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+++.++..+|||+|.+.
T Consensus       182 s~~~a~~a~~~G~d~I~v~  200 (299)
T cd02809         182 TPEDALRAVDAGADGIVVS  200 (299)
T ss_pred             CHHHHHHHHHCCCCEEEEc
Confidence            9999999999999999884

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART)

Probab=95.68  E-value=0.087  Score=44.88  Aligned_cols=85  Identities=22%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             EEEEeccCHHHHHHHHHcCCcEEEeecc---CcCC-CCCccc---hHHHHHHHHH---HhCCCcEEEEecC-CCCHHHHH
Q psy16780         67 IVLKGILTAEDAKIGVEMGASAIMVSNH---GGRQ-LDYVPA---SIEALPEIAK---AVGHKVDVYLDGG-VRYGTDVF  135 (202)
Q Consensus        67 v~vK~~~~~~~a~~l~~aG~d~I~v~~~---gg~~-~~~~~~---~~~~l~~i~~---~~~~~ipiia~GG-I~~~~D~~  135 (202)
                      +.+-.+.++++++...++|+|.|+++-.   +|+. .+...+   ..+.+.++.+   .+++++-+++.|| |.+++|+.
T Consensus       152 ~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~  231 (268)
T PF09370_consen  152 FTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQ  231 (268)
T ss_dssp             EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHH
T ss_pred             eeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence            3445678999999999999999998532   2221 111111   1122333333   3455666666665 89999999


Q ss_pred             HHHHh--CCCEEEEcHHH
Q psy16780        136 KALAL--GAKMVFVGRPA  151 (202)
Q Consensus       136 kal~~--GAd~V~ig~~~  151 (202)
                      ..+..  |++++.=||.+
T Consensus       232 ~~l~~t~~~~Gf~G~Ss~  249 (268)
T PF09370_consen  232 YVLRNTKGIHGFIGASSM  249 (268)
T ss_dssp             HHHHH-TTEEEEEESTTT
T ss_pred             HHHhcCCCCCEEecccch
Confidence            99984  68888877765

Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=95.60  E-value=0.32  Score=38.96  Aligned_cols=87  Identities=24%  Similarity=0.229  Sum_probs=60.1

Q ss_pred             HHHHHHHHHh-cCCCEEE--Eecc-CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEe-c
Q psy16780         53 WSDVTWLKTI-TKLPIVL--KGIL-TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLD-G  126 (202)
Q Consensus        53 ~~~i~~i~~~-~~~Pv~v--K~~~-~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~-G  126 (202)
                      .+.++++++. .+.|+++  |... ....++.+.++|+|+++++....      +.+.. .+..++ ..  .++++.+ =
T Consensus        41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~-~~--g~~~~v~~~  111 (202)
T cd04726          41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAK-KY--GKEVQVDLI  111 (202)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHH-Hc--CCeEEEEEe
Confidence            6789999987 4888887  4332 22457899999999999965321      11122 233332 22  5677664 6


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEc
Q psy16780        127 GVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +..|+.++.+++..|+|.|.+.
T Consensus       112 ~~~t~~e~~~~~~~~~d~v~~~  133 (202)
T cd04726         112 GVEDPEKRAKLLKLGVDIVILH  133 (202)
T ss_pred             CCCCHHHHHHHHHCCCCEEEEc
Confidence            7899999999888899999885

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=95.51  E-value=0.062  Score=44.75  Aligned_cols=75  Identities=23%  Similarity=0.387  Sum_probs=47.4

Q ss_pred             HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH-----------HHHHHHHhCCCEEEE
Q psy16780         79 KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT-----------DVFKALALGAKMVFV  147 (202)
Q Consensus        79 ~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~-----------D~~kal~~GAd~V~i  147 (202)
                      +.+.+.|+|+++.+..             .+..+++..+ +-.++.++||+ +.           .+..++..|||.+.+
T Consensus       142 ~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVv  206 (230)
T PRK00230        142 KLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVV  206 (230)
T ss_pred             HHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEE
Confidence            4456788888876431             1244444443 34457779997 33           477788899999999


Q ss_pred             cHHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        148 GRPALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       148 g~~~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                      ||+++.+   ..+   ....+.+.+++
T Consensus       207 GR~I~~a---~dP---~~~a~~i~~~i  227 (230)
T PRK00230        207 GRPITQA---ADP---AAAYEAILAEI  227 (230)
T ss_pred             CCcccCC---CCH---HHHHHHHHHHh
Confidence            9998853   223   23445555544

>PLN02535 glycolate oxidase

Probab=95.44  E-value=0.15  Score=45.44  Aligned_cols=91  Identities=18%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             HHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeecc----CcCC--------------CC----------
Q psy16780         55 DVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH----GGRQ--------------LD----------  100 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~----gg~~--------------~~----------  100 (202)
                      -+++|.+..+-|.+..+-      .+.+.++++.++|+.+++++-.    |-|.              ..          
T Consensus       114 slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~  193 (364)
T PLN02535        114 TVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSD  193 (364)
T ss_pred             CHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcc
Confidence            455555555668888764      2456678899999999988531    1110              00          


Q ss_pred             -------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        101 -------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       101 -------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                                   ....+|+.+..+++..  ++|||+ .||.+++|+.++..+|+|+|.+.
T Consensus       194 ~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs  251 (364)
T PLN02535        194 KGSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS  251 (364)
T ss_pred             ccccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence                         0123667777776654  799888 66999999999999999999885

>PRK14057 epimerase; Provisional

Probab=95.42  E-value=0.39  Score=40.83  Aligned_cols=97  Identities=13%  Similarity=0.150  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcCCC-------EEEEec----cCHHHHHHHHHcCCcEEEeec-cCcCC-CCCccchHHHHHHHHHHhC--
Q psy16780         53 WSDVTWLKTITKLP-------IVLKGI----LTAEDAKIGVEMGASAIMVSN-HGGRQ-LDYVPASIEALPEIAKAVG--  117 (202)
Q Consensus        53 ~~~i~~i~~~~~~P-------v~vK~~----~~~~~a~~l~~aG~d~I~v~~-~gg~~-~~~~~~~~~~l~~i~~~~~--  117 (202)
                      .+.+++||+. +.+       +-+++.    ...+.++..++. +|.|.+=. .+|.. ....+...+-++++++...  
T Consensus       113 ~~~l~~Ir~~-G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~  190 (254)
T PRK14057        113 HHTLSWLGQQ-TVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDK  190 (254)
T ss_pred             HHHHHHHHHc-CCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhc
Confidence            4577888875 332       223333    345777777764 88877633 22211 1112334444555444332  


Q ss_pred             -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                       .++.|-++|||.. +.+.++.++|||.+.+||++.
T Consensus       191 ~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~GSalF  225 (254)
T PRK14057        191 REGKIIVIDGSLTQ-DQLPSLIAQGIDRVVSGSALF  225 (254)
T ss_pred             CCCceEEEECCCCH-HHHHHHHHCCCCEEEEChHhh
Confidence             2578999999865 578889999999999999865

>PLN02979 glycolate oxidase

Probab=95.41  E-value=0.17  Score=45.08  Aligned_cols=92  Identities=17%  Similarity=0.158  Sum_probs=62.8

Q ss_pred             HHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-C-----------------CCC-------
Q psy16780         55 DVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-R-----------------QLD-------  100 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~-----------------~~~-------  100 (202)
                      -+++|.+..+.|.+.++-      .+.+.++++.++|+++++++-.   .| |                 ...       
T Consensus       111 slEeIa~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~  190 (366)
T PLN02979        111 SVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKM  190 (366)
T ss_pred             CHHHHHhccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCC
Confidence            344444444567777764      2456678899999999988521   11 1                 000       


Q ss_pred             ----------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        101 ----------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       101 ----------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                                      ....+|+.+..+++.-  ++|||. .||.+.+|+.++..+|+|+|.++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn  252 (366)
T PLN02979        191 DEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN  252 (366)
T ss_pred             CcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence                            0123566777776654  799988 568899999999999999998875

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=95.38  E-value=0.083  Score=46.70  Aligned_cols=99  Identities=15%  Similarity=0.165  Sum_probs=56.2

Q ss_pred             HHHHHHHHHh---cCCCEEEEe-c---------------cCH----HHHHHHHH--cCCcEEEeeccCc----CCCCCc-
Q psy16780         53 WSDVTWLKTI---TKLPIVLKG-I---------------LTA----EDAKIGVE--MGASAIMVSNHGG----RQLDYV-  102 (202)
Q Consensus        53 ~~~i~~i~~~---~~~Pv~vK~-~---------------~~~----~~a~~l~~--aG~d~I~v~~~gg----~~~~~~-  102 (202)
                      .+.++++.+.   .++|+++=. +               ..+    +.++.+.+  .|+|.+.+--.+.    ...+.+ 
T Consensus       142 ~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~  221 (340)
T PRK12858        142 HAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFE  221 (340)
T ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccccc
Confidence            3356666554   489998842 1               012    23566674  9999999843211    001110 


Q ss_pred             -c-ch---HHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHHH----HHhCC--CEEEEcHHHHHH
Q psy16780        103 -P-AS---IEALPEIAKAVGHKVDVYL-DGGVRYGTDVFKA----LALGA--KMVFVGRPALWG  154 (202)
Q Consensus       103 -~-~~---~~~l~~i~~~~~~~ipiia-~GGI~~~~D~~ka----l~~GA--d~V~ig~~~l~~  154 (202)
                       . ..   .+.+.++.+..  .+|+|. +||+ +.+++.+.    +..||  ++|.+||.....
T Consensus       222 ~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~  282 (340)
T PRK12858        222 EAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQD  282 (340)
T ss_pred             ccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhh
Confidence             0 11   12344544443  577666 7787 66666554    45799  999999987653

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=95.33  E-value=0.73  Score=39.76  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=72.9

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~  149 (202)
                      +|++|+... +.|+|.+-++-+.-...+.+.  -+++.|.++++.+  ++|++.-||=.. .+++.+++.+|..=|-++|
T Consensus       154 ~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T  231 (282)
T TIGR01858       154 DPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNVAT  231 (282)
T ss_pred             CHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            578887765 699999988753222222233  3677899998888  799999886544 4667789999999999999


Q ss_pred             HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      .+..+..       ...      ..-.....+.+++.++..|..+|..
T Consensus       232 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  279 (282)
T TIGR01858       232 ELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA  279 (282)
T ss_pred             HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7654311       011      1223344456677777777777754

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=95.30  E-value=0.18  Score=41.58  Aligned_cols=84  Identities=25%  Similarity=0.269  Sum_probs=60.4

Q ss_pred             HHHHHHHhcCCCEEEEecc--CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         55 DVTWLKTITKLPIVLKGIL--TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~--~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +..++++.-=+||+.....  ....++.+++.|++.|.+.-+.       +...+.++.+++.++  =-+|+.|=|-+++
T Consensus         6 ~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p--~~lIGAGTVL~~~   76 (211)
T COG0800           6 ILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFP--EALIGAGTVLNPE   76 (211)
T ss_pred             HHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCc--ccEEccccccCHH
Confidence            4444444323565544331  2345688999999999996542       346678888888764  3489999999999


Q ss_pred             HHHHHHHhCCCEEEE
Q psy16780        133 DVFKALALGAKMVFV  147 (202)
Q Consensus       133 D~~kal~~GAd~V~i  147 (202)
                      ++.++.++||+++.-
T Consensus        77 q~~~a~~aGa~fiVs   91 (211)
T COG0800          77 QARQAIAAGAQFIVS   91 (211)
T ss_pred             HHHHHHHcCCCEEEC
Confidence            999999999998863

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=95.28  E-value=0.72  Score=39.89  Aligned_cols=109  Identities=21%  Similarity=0.223  Sum_probs=74.7

Q ss_pred             CHHHHHHHHH-cCCcEEEeeccCcCCCC-Ccc--chHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVE-MGASAIMVSNHGGRQLD-YVP--ASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~-aG~d~I~v~~~gg~~~~-~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig  148 (202)
                      +|++++...+ .|+|.+-++-+.-...+ ..+  -+++.|.++++.+  ++|++.-||=..+ +++.+++..|..=|=++
T Consensus       159 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~  236 (288)
T TIGR00167       159 DPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVNID  236 (288)
T ss_pred             CHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence            5788888774 79999998753211122 122  3677899998888  8999999987776 57888999999999999


Q ss_pred             HHHHHHh----h---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWGL----A---HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~~----~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      |.+..+.    .   ...      ..-.....+.+++.++..|..+|..
T Consensus       237 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  285 (288)
T TIGR00167       237 TELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA  285 (288)
T ss_pred             hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9765431    1   011      1223344556677777777777754

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=95.27  E-value=0.81  Score=39.49  Aligned_cols=109  Identities=19%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~  149 (202)
                      +|++|+... +.|+|.+-++.+.-...+.+.|  +++.|.++++.+  ++|++.-||=.. .+++.+++.+|..=|-++|
T Consensus       156 ~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T  233 (284)
T PRK12737        156 NPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNVAT  233 (284)
T ss_pred             CHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence            678887766 5999999987532122222333  667799998887  799999886544 4667789999999999999


Q ss_pred             HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      .+-.+..       .+.      ..-.....+.+++.++..|..+|..
T Consensus       234 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  281 (284)
T PRK12737        234 ELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE  281 (284)
T ss_pred             HHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7653211       011      1113334455666677777777653

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=95.22  E-value=0.84  Score=39.25  Aligned_cols=108  Identities=20%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             CHHHHHHHHH-cCCcEEEeeccCcCCCC-Ccc--chHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVE-MGASAIMVSNHGGRQLD-YVP--ASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~-aG~d~I~v~~~gg~~~~-~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig  148 (202)
                      +|++++...+ .|+|.+-++-+.-...+ ++.  -+++.|.++.+.+  ++|++.-||=..+ +++.+++..|..=|-++
T Consensus       149 ~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~  226 (276)
T cd00947         149 DPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKININ  226 (276)
T ss_pred             CHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence            5888887765 79999998753211122 113  3677899999888  8999999987766 55888999999999999


Q ss_pred             HHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780        149 RPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGC  183 (202)
Q Consensus       149 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~  183 (202)
                      +.+..+..       ...      ..-.....+.+.+.++..|..+|.
T Consensus       227 T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s  274 (276)
T cd00947         227 TDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS  274 (276)
T ss_pred             hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            97654311       010      011233344566666666666664

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=95.01  E-value=0.03  Score=44.90  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             HHhhhccCcccc----HHHHHHHHHhcCCCEEEEec-c---CHHH-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780         41 AYITSQLDETIN----WSDVTWLKTITKLPIVLKGI-L---TAED-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE  111 (202)
Q Consensus        41 ~~~~~~~d~~~~----~~~i~~i~~~~~~Pv~vK~~-~---~~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~  111 (202)
                      +++...+.++..    ...++..++ .++..+-+.- .   +.+. .+.+.+...|+|.+  -+|       .-...+.+
T Consensus        65 ~~L~~~~~~dGIISTk~~~i~~Ak~-~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEi--lPg-------~~p~vi~~  134 (175)
T PF04309_consen   65 EYLKEYGKPDGIISTKSNLIKRAKK-LGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEI--LPG-------VMPKVIKK  134 (175)
T ss_dssp             HHHHHTT--SEEEESSHHHHHHHHH-TT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEE--ESC-------CHHHHHCC
T ss_pred             HHHHHcCCCcEEEeCCHHHHHHHHH-cCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEE--chH-------HHHHHHHH
Confidence            566666666662    346666654 4777776654 2   2333 45667888999988  222       01223444


Q ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       112 i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +++.+  ++|+|+.|=|++.+|+.+++.+||++|.-+++-+|
T Consensus       135 i~~~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW  174 (175)
T PF04309_consen  135 IREET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW  174 (175)
T ss_dssp             CCCCC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred             HHHhc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence            43333  69999999999999999999999999998876553

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=94.98  E-value=0.92  Score=39.20  Aligned_cols=110  Identities=19%  Similarity=0.242  Sum_probs=73.7

Q ss_pred             CHHHHHHH-HHcCCcEEEeeccCcCCCCCc--cc--hHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEE
Q psy16780         74 TAEDAKIG-VEMGASAIMVSNHGGRQLDYV--PA--SIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFV  147 (202)
Q Consensus        74 ~~~~a~~l-~~aG~d~I~v~~~gg~~~~~~--~~--~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~i  147 (202)
                      +|++|+.. .+.|+|.+-++-+.-.....+  .|  +++.|.++++.++ ++|++.-||=..+ +++.+++.+|..=|=+
T Consensus       156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi  234 (287)
T PF01116_consen  156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKINI  234 (287)
T ss_dssp             SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEEE
T ss_pred             CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEEE
Confidence            57888776 589999999875322222223  34  5667899988764 6999999986655 4888999999999999


Q ss_pred             cHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        148 GRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       148 g~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      +|.+..+..       .+.      .+-.....+.+++.++..|..+|..
T Consensus       235 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~  284 (287)
T PF01116_consen  235 GTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA  284 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            997664321       111      1223444566777778888888764

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=94.97  E-value=0.35  Score=42.33  Aligned_cols=94  Identities=18%  Similarity=0.147  Sum_probs=57.3

Q ss_pred             HHHHHHHhcCCCEEEEec-cCH----HHHHHHHHcCCcEEEeeccC--cC-CCCCccc---hHHHHHHHHHHhCCCcEEE
Q psy16780         55 DVTWLKTITKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNHG--GR-QLDYVPA---SIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~g--g~-~~~~~~~---~~~~l~~i~~~~~~~ipii  123 (202)
                      .++..++..+.||++-+. .+.    +.++.+.++|+|+|.+.-+.  .+ ...+...   ..+.+..+++.+  ++||+
T Consensus        90 ~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~  167 (325)
T cd04739          90 LIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVA  167 (325)
T ss_pred             HHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEE
Confidence            444455555889988764 333    44677788999999985431  11 1111111   123445555544  68988


Q ss_pred             E--ecCCCCHHHHHHHH-HhCCCEEEEcHH
Q psy16780        124 L--DGGVRYGTDVFKAL-ALGAKMVFVGRP  150 (202)
Q Consensus       124 a--~GGI~~~~D~~kal-~~GAd~V~ig~~  150 (202)
                      +  +..+.+..++++++ +.|||++.+.-.
T Consensus       168 vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt  197 (325)
T cd04739         168 VKLSPFFSALAHMAKQLDAAGADGLVLFNR  197 (325)
T ss_pred             EEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence            8  55566677777765 479999887554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=94.96  E-value=0.27  Score=43.95  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             HHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-CC-----------------CC-------
Q psy16780         55 DVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-RQ-----------------LD-------  100 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~~-----------------~~-------  100 (202)
                      -+++|.+..+-|.+..+-      .+.+.++++.++|+.+++++-.   .| |.                 ..       
T Consensus       112 slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~  191 (367)
T PLN02493        112 SVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKM  191 (367)
T ss_pred             CHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCC
Confidence            344444444557777653      2456678899999999988531   11 10                 00       


Q ss_pred             ----------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        101 ----------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       101 ----------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                                      ....+|+.+..+++.-  ++|||. .||.+.+|+.+++.+|+|+|.++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn  253 (367)
T PLN02493        192 DEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN  253 (367)
T ss_pred             CcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence                            0123566677776654  799988 568899999999999999999864

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=94.90  E-value=1.2  Score=38.38  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~  149 (202)
                      +|++++... +.|+|.+-++-+.-...+.+.|  +++.|.++++.+  ++|++.-||=.. .+++.+++..|..=|-++|
T Consensus       156 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T  233 (284)
T PRK12857        156 DPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT  233 (284)
T ss_pred             CHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            578888775 6799999887532222222333  667889998887  799999887544 4667789999999999999


Q ss_pred             HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      -+..+..       ...      ..-.....+.+++..+..|..+|..
T Consensus       234 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  281 (284)
T PRK12857        234 NIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA  281 (284)
T ss_pred             HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7654311       000      1123344455667777777777653

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=94.90  E-value=0.55  Score=40.11  Aligned_cols=97  Identities=19%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCC-cc--chHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDY-VP--ASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~-~~--~~~~~l~~i~~~~~~~ipii  123 (202)
                      .+.++++ ..++.||++|-.  .+.++.    +.+...|-.-+.+.-.|++.... ..  .++..+..+++..  ..||+
T Consensus       124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~  200 (266)
T PRK13398        124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII  200 (266)
T ss_pred             HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence            4567777 456899999965  355553    45566787666665555433221 11  2334455555444  68999


Q ss_pred             Ee-cCCCC-----HHHHHHHHHhCCCEEEEcHHHH
Q psy16780        124 LD-GGVRY-----GTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       124 a~-GGI~~-----~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+ +--..     ...+..++++||+++++=+.+-
T Consensus       201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~  235 (266)
T PRK13398        201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE  235 (266)
T ss_pred             EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence            93 43223     5667788889999999987544

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=94.74  E-value=0.35  Score=41.05  Aligned_cols=72  Identities=25%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...++||+++.+-....  ..  ..+.+.+..+++.+  ++||+.--=|.++.++..+..+|||+|.+.-..+
T Consensus        73 ~~~A~~~~~~GA~aisvlte~~--~f--~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l  144 (260)
T PRK00278         73 VEIAKAYEAGGAACLSVLTDER--FF--QGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL  144 (260)
T ss_pred             HHHHHHHHhCCCeEEEEecccc--cC--CCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence            4678889999999998854211  11  12356777777776  8999987778899999999999999999876554

>PLN02591 tryptophan synthase

Probab=94.63  E-value=0.069  Score=45.21  Aligned_cols=45  Identities=27%  Similarity=0.205  Sum_probs=38.5

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      +....+.++.+|+.+++||.++. +.++++++.+.+.|+|+++|+.
T Consensus       174 ~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS  219 (250)
T PLN02591        174 SGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS  219 (250)
T ss_pred             chhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence            44456689999999999999985 4679999999999999999965

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=94.57  E-value=0.56  Score=41.53  Aligned_cols=91  Identities=19%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             HHHHHHhc--CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---CcC---------CC-------C--------
Q psy16780         56 VTWLKTIT--KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GGR---------QL-------D--------  100 (202)
Q Consensus        56 i~~i~~~~--~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg~---------~~-------~--------  100 (202)
                      +++|.+..  +.|.++-+-      .+.+..+++.++|+++++++-.   .|+         +.       .        
T Consensus       107 ~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~  186 (344)
T cd02922         107 LEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGG  186 (344)
T ss_pred             HHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccc
Confidence            34444442  367766432      2356678899999999998642   111         00       0        


Q ss_pred             ----------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        101 ----------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       101 ----------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                                ....+++.+.++++..  ++|||.- ||.+.+|+.++...|+|++.+.-
T Consensus       187 ~~~~~~~~~~~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn  242 (344)
T cd02922         187 GAGRAMSGFIDPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN  242 (344)
T ss_pred             hHHHHHhhccCCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence                      0124566777777766  7899987 68999999999999999998864

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=94.55  E-value=0.23  Score=43.95  Aligned_cols=101  Identities=18%  Similarity=0.162  Sum_probs=60.7

Q ss_pred             HHHHHHHHHh---cCCCEEEEec------cC-------HH----HHHHHHHcCCcEEEeeccCc--C--CC---------
Q psy16780         53 WSDVTWLKTI---TKLPIVLKGI------LT-------AE----DAKIGVEMGASAIMVSNHGG--R--QL---------   99 (202)
Q Consensus        53 ~~~i~~i~~~---~~~Pv~vK~~------~~-------~~----~a~~l~~aG~d~I~v~~~gg--~--~~---------   99 (202)
                      ++.+.++.++   +++|+++-.-      .+       ++    .++.+.+.|||.|.+--.+.  .  ..         
T Consensus       178 l~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~  257 (348)
T PRK09250        178 IEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRV  257 (348)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccc
Confidence            4445555444   5899987321      11       22    25778999999999854321  0  00         


Q ss_pred             -C--CccchHHHHHHHHHHh-CCCcEEEEecCCCCH-HH----HHHH---HHhCCCEEEEcHHHHH
Q psy16780        100 -D--YVPASIEALPEIAKAV-GHKVDVYLDGGVRYG-TD----VFKA---LALGAKMVFVGRPALW  153 (202)
Q Consensus       100 -~--~~~~~~~~l~~i~~~~-~~~ipiia~GGI~~~-~D----~~ka---l~~GAd~V~ig~~~l~  153 (202)
                       +  ......+.++.+.+.+ .+++||+.+||=... +|    +..+   +..||.++.+||-...
T Consensus       258 ~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ  323 (348)
T PRK09250        258 YSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQ  323 (348)
T ss_pred             cccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhc
Confidence             0  0112233445554443 347999999998843 33    3456   6789999999997653

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=94.53  E-value=0.21  Score=42.54  Aligned_cols=79  Identities=27%  Similarity=0.419  Sum_probs=53.3

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC--HHHHH----HHHHhCCCEEEEcHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY--GTDVF----KALALGAKMVFVGRPA  151 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~--~~D~~----kal~~GAd~V~ig~~~  151 (202)
                      ++.+.+.|+|.|.+.-.+         +.+.++++.+..  .+||+.+||=++  ..++.    .++..||.++.+||-+
T Consensus       172 aRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi  240 (265)
T COG1830         172 ARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI  240 (265)
T ss_pred             HHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence            467889999999874322         235667776666  499999999877  23333    4556799999999977


Q ss_pred             HHHhhhcChHHHHHHHHHH
Q psy16780        152 LWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       152 l~~~~~~G~~~v~~~i~~l  170 (202)
                      ..   ..-++++.+.|..+
T Consensus       241 fQ---~~~p~~m~~Ai~~I  256 (265)
T COG1830         241 FQ---HEDPEAMVKAIQAI  256 (265)
T ss_pred             hc---cCChHHHHHHHHHH
Confidence            63   23455444444443

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=94.45  E-value=0.86  Score=38.76  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhcCCCEEEEec-c-CHHHH----HHHHHcCCcEEEeeccCcCCCCC---ccchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-L-TAEDA----KIGVEMGASAIMVSNHGGRQLDY---VPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~-~~~~a----~~l~~aG~d~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .+.++++. .++.||++|-. . ++++.    +.+.+.|.+-|.+.-.|-+....   ...++..+..+++..  .+||+
T Consensus       122 ~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~  198 (260)
T TIGR01361       122 FELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPII  198 (260)
T ss_pred             HHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEE
Confidence            45666665 45899999965 3 56554    45567888766664332222211   134666777777655  69999


Q ss_pred             E----ecCCCC--HHHHHHHHHhCCCEEEEcHHHH
Q psy16780        124 L----DGGVRY--GTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       124 a----~GGI~~--~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .    ++|.|.  ..-...|+++||+++++=+.|-
T Consensus       199 ~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t  233 (260)
T TIGR01361       199 VDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD  233 (260)
T ss_pred             EcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence            9    334322  3445577889999998877554

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=94.42  E-value=0.69  Score=41.02  Aligned_cols=99  Identities=14%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             CccccHHHHHHHHHhc-CCCEEEEec------cCHHHH-HHHHHcCCcEEEeeccCcCC--CCCccchH----HHHHHHH
Q psy16780         48 DETINWSDVTWLKTIT-KLPIVLKGI------LTAEDA-KIGVEMGASAIMVSNHGGRQ--LDYVPASI----EALPEIA  113 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~-~~Pv~vK~~------~~~~~a-~~l~~aG~d~I~v~~~gg~~--~~~~~~~~----~~l~~i~  113 (202)
                      +|+ ..+.++.+|+.. +.|+++=+.      .+++.+ +.....++|++.++-.....  ...+..++    +.+.+++
T Consensus       104 ~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~  182 (352)
T PRK05437        104 DPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIV  182 (352)
T ss_pred             Chh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHH
Confidence            555 556788888877 889887432      235554 44556789999886432211  11222233    3456666


Q ss_pred             HHhCCCcEEEE--ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        114 KAVGHKVDVYL--DGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       114 ~~~~~~ipiia--~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.+  ++||+.  +|.-.+.+++.++..+|+|++.++.
T Consensus       183 ~~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg  218 (352)
T PRK05437        183 SAL--PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG  218 (352)
T ss_pred             Hhh--CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence            666  799997  5655778888888889999999854

>cd00439 Transaldolase Transaldolase

Probab=94.23  E-value=1.3  Score=37.46  Aligned_cols=89  Identities=12%  Similarity=-0.000  Sum_probs=54.3

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-----CcCCC-CC-----ccchHHHHHHHHHHh---CCCcEEEEecCCC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-----GGRQL-DY-----VPASIEALPEIAKAV---GHKVDVYLDGGVR  129 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-----gg~~~-~~-----~~~~~~~l~~i~~~~---~~~ipiia~GGI~  129 (202)
                      ++++-+=.+++++.+..+.++|+++|...-+     +.... +.     +.+....+.++.+.+   ..+..|++. .++
T Consensus       139 GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~A-S~r  217 (252)
T cd00439         139 GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWA-SFS  217 (252)
T ss_pred             CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEE-eeC
Confidence            4555555556778888888899888876321     11110 00     013333344443332   335667664 489


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHHHh
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALWGL  155 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~~~  155 (202)
                      +..++.+++  |+|.|-+.-..+..+
T Consensus       218 ~~~~v~~l~--G~d~vT~~p~v~~~l  241 (252)
T cd00439         218 DTLYVAPLI--GCDTVTTMPDQALEA  241 (252)
T ss_pred             CHHHHHHhh--CCCeeecCHHHHHHH
Confidence            999998766  999999988777654

Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=94.20  E-value=0.095  Score=44.70  Aligned_cols=42  Identities=21%  Similarity=0.132  Sum_probs=37.1

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++.+|+.++.|+.+..- .++++++.+.+.|+|+++++.
T Consensus       190 ~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS  232 (263)
T CHL00200        190 LKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS  232 (263)
T ss_pred             HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence            566899999999999999854 679999999999999999965

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=94.19  E-value=0.34  Score=40.75  Aligned_cols=82  Identities=24%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             HHH-HHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780         78 AKI-GVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus        78 a~~-l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      ++. +...++|+|+++|..    .+.+++.+.|..+++..  ++|+++..|+ +.+.+.+.+.. ||++.+|+.|=.   
T Consensus       169 v~dtver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~---  237 (263)
T COG0434         169 VKDTVERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKK---  237 (263)
T ss_pred             HHHHHHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEcc---
Confidence            444 566789999998841    23467888888887777  5999998885 67778888777 999999997753   


Q ss_pred             hcC-------hHHHHHHHHHHH
Q psy16780        157 HSG-------KSGVRKVLDILI  171 (202)
Q Consensus       157 ~~G-------~~~v~~~i~~l~  171 (202)
                       +|       .+.+.++++..+
T Consensus       238 -~G~~~n~VD~~Rv~~~v~~a~  258 (263)
T COG0434         238 -GGVTWNPVDLERVRRFVEAAR  258 (263)
T ss_pred             -CCEecCccCHHHHHHHHHHHH
Confidence             33       355655555443

>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]

Probab=94.11  E-value=2.8  Score=35.29  Aligned_cols=83  Identities=22%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHH---HHHHHHHhCCC-cEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA---LPEIAKAVGHK-VDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~---l~~i~~~~~~~-ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      ++..++..+.++|++.|..  .-||-.|++......   +.++.+..+.. ..+++. +++++.++..+..+|||.+-+.
T Consensus       124 FS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~va-s~~~~~~~~~~~l~G~d~~Tip  200 (239)
T COG0176         124 FSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVA-SARFPNHVYIAALAGADVLTIP  200 (239)
T ss_pred             ecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEe-cCccHHHHHHHHHhCCCcccCC
Confidence            4555566667777666654  334544444333333   34444443333 455554 5899999999999999999999


Q ss_pred             HHHHHHhhhc
Q psy16780        149 RPALWGLAHS  158 (202)
Q Consensus       149 ~~~l~~~~~~  158 (202)
                      -..+..+...
T Consensus       201 ~~~l~~l~~~  210 (239)
T COG0176         201 PDLLKQLLKH  210 (239)
T ss_pred             HHHHHHHHhc
Confidence            8888765544

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=94.11  E-value=0.63  Score=38.19  Aligned_cols=73  Identities=22%  Similarity=0.216  Sum_probs=45.7

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe-----cCC-CCH-------HHHHHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD-----GGV-RYG-------TDVFKALA  139 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~-----GGI-~~~-------~D~~kal~  139 (202)
                      .+++++..+.+.|||.|.+..+-  ...+-.|+...++.+++..  ++||...     |+. .|.       +|+..+..
T Consensus         8 ~s~~~a~~A~~~GAdRiELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~   83 (201)
T PF03932_consen    8 ESLEDALAAEAGGADRIELCSNL--EVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE   83 (201)
T ss_dssp             SSHHHHHHHHHTT-SEEEEEBTG--GGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEECCCc--cCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999987631  1112246777788887766  7888773     333 233       35566667


Q ss_pred             hCCCEEEEcH
Q psy16780        140 LGAKMVFVGR  149 (202)
Q Consensus       140 ~GAd~V~ig~  149 (202)
                      +|||++.+|-
T Consensus        84 ~GadG~VfG~   93 (201)
T PF03932_consen   84 LGADGFVFGA   93 (201)
T ss_dssp             TT-SEEEE--
T ss_pred             cCCCeeEEEe
Confidence            8999999996

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=94.08  E-value=0.72  Score=41.50  Aligned_cols=42  Identities=21%  Similarity=0.268  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +|+.+..+++..  ++|||.- ||.+.+|+.+++.+|+|+|.++-
T Consensus       241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn  282 (383)
T cd03332         241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN  282 (383)
T ss_pred             CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence            566777777765  7898885 79999999999999999999863

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=94.08  E-value=1.2  Score=35.82  Aligned_cols=89  Identities=20%  Similarity=0.145  Sum_probs=56.2

Q ss_pred             cHHHHHHHHHhc-CCCEEEEe-ccCHH--HHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEe-
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKG-ILTAE--DAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLD-  125 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~-~~~~~--~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~-  125 (202)
                      ..+.|+.+++.. +.++++-. ..++.  +++.+.++|+|+|.++...      ...+.. .+..+ +..  .++++.. 
T Consensus        39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~-~~~--g~~~~~~~  109 (206)
T TIGR03128        39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAA-KKH--GKEVQVDL  109 (206)
T ss_pred             CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHH-HHc--CCEEEEEe
Confidence            466889998875 45555433 23443  6899999999999985421      111222 33333 333  5777764 


Q ss_pred             cCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780        126 GGVRY-GTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       126 GGI~~-~~D~~kal~~GAd~V~ig~  149 (202)
                      -+..+ .+++..+..+|+|.|.+..
T Consensus       110 ~~~~t~~~~~~~~~~~g~d~v~~~p  134 (206)
T TIGR03128       110 INVKDKVKRAKELKELGADYIGVHT  134 (206)
T ss_pred             cCCCChHHHHHHHHHcCCCEEEEcC
Confidence            34444 4777778888999998853

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=94.08  E-value=0.51  Score=40.81  Aligned_cols=93  Identities=10%  Similarity=0.052  Sum_probs=63.9

Q ss_pred             CccccHHHHHHHHHhcC-CCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         48 DETINWSDVTWLKTITK-LPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~-~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      +++...+.++.+|+.++ +++.++..  .+.++    ++.+.+.|++.+.=      ..  .+.+++.++++++..  ++
T Consensus       160 ~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe------P~--~~~d~~~~~~L~~~~--~i  229 (316)
T cd03319         160 DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ------PV--PAGDDDGLAYLRDKS--PL  229 (316)
T ss_pred             ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC------CC--CCCCHHHHHHHHhcC--CC
Confidence            44455678888888764 66777654  34444    34556667766631      00  123566777887765  79


Q ss_pred             EEEEecCCCCHHHHHHHHHh-CCCEEEEcHH
Q psy16780        121 DVYLDGGVRYGTDVFKALAL-GAKMVFVGRP  150 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~-GAd~V~ig~~  150 (202)
                      ||++++.+.+..++.+++.. ++|.|++--.
T Consensus       230 pIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~  260 (316)
T cd03319         230 PIMADESCFSAADAARLAGGGAYDGINIKLM  260 (316)
T ss_pred             CEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence            99999999999999999996 5899887643

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=94.06  E-value=0.58  Score=38.91  Aligned_cols=62  Identities=13%  Similarity=0.097  Sum_probs=48.4

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH--HHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR--PAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~--~~l  152 (202)
                      ..++.+...|+++|++..           +.+.++.+++..  ++||+.|+  -.++....+.++|||.|-+|-  .|+
T Consensus        31 ~i~~AA~~ggAt~vDIAa-----------dp~LV~~~~~~s--~lPICVSa--Vep~~f~~aV~AGAdliEIGNfDsFY   94 (242)
T PF04481_consen   31 AIVKAAEIGGATFVDIAA-----------DPELVKLAKSLS--NLPICVSA--VEPELFVAAVKAGADLIEIGNFDSFY   94 (242)
T ss_pred             HHHHHHHccCCceEEecC-----------CHHHHHHHHHhC--CCCeEeec--CCHHHHHHHHHhCCCEEEecchHHHH
Confidence            345777889999999954           345555554433  89999988  589999999999999999998  455

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>cd02812 PcrB_like PcrB_like proteins

Probab=94.02  E-value=0.14  Score=42.56  Aligned_cols=43  Identities=30%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ...+.++++++.+ +.|+++.+. .++++++.+.++|+|.|++++
T Consensus       161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs  205 (219)
T cd02812         161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN  205 (219)
T ss_pred             CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence            3577999999998 999999864 799999999999999999965

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=94.01  E-value=0.9  Score=38.78  Aligned_cols=124  Identities=21%  Similarity=0.239  Sum_probs=75.7

Q ss_pred             HHHHHHHHhc---CCCEEEEec------cCH------------HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         54 SDVTWLKTIT---KLPIVLKGI------LTA------------EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        54 ~~i~~i~~~~---~~Pv~vK~~------~~~------------~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      ..|+++-+.+   ++|.++-..      .+.            +.++.+.+.|+|-+.|---.    .......+++..+
T Consensus       147 a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPv----yveGe~~ea~~~f  222 (306)
T COG3684         147 AYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPV----YVEGEQEEAAAAF  222 (306)
T ss_pred             HHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecce----eccCccHHHHHHH
Confidence            3566666654   899998654      111            22355667899888774321    1101233333333


Q ss_pred             HHHh-CCCcE-EEEecCCCC---HHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q psy16780        113 AKAV-GHKVD-VYLDGGVRY---GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVG  187 (202)
Q Consensus       113 ~~~~-~~~ip-iia~GGI~~---~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~  187 (202)
                      .+.- ..++| |+.|.||..   ...+.-|...||++|..||+.-.+....|.+           ..+.++.-.|..+|+
T Consensus       223 ~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa~~v~~g~d-----------~~re~Lrt~g~~ni~  291 (306)
T COG3684         223 QRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATWAGVVEQGED-----------AAREWLRTVGFPNLD  291 (306)
T ss_pred             HHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhhhcccccCcH-----------HHHHHHHhhccccHH
Confidence            2211 12677 556889965   5667777889999999999876543334554           345667778888888


Q ss_pred             hhhhc
Q psy16780        188 EIQRE  192 (202)
Q Consensus       188 el~~~  192 (202)
                      +|.+.
T Consensus       292 eL~~v  296 (306)
T COG3684         292 ELNKV  296 (306)
T ss_pred             HHHHH
Confidence            88754

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea

Probab=93.97  E-value=0.48  Score=40.48  Aligned_cols=92  Identities=12%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|+|+|.+.|+.|....-..... +.+..+++.. +++ +.+.|+. +..|+.+..    .+|||++++..|
T Consensus        24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~v-i~gvg~~-~~~~ai~~a~~a~~~Gad~v~v~~P  100 (279)
T cd00953          24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKV-IFQVGSL-NLEESIELARAAKSFGIYAIASLPP  100 (279)
T ss_pred             HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCE-EEEeCcC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            4467788999999999887553221111122 2344455554 332 4445553 344444332    379999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.  .-..+++.+++..+.+
T Consensus       101 ~y~~--~~~~~~i~~yf~~v~~  120 (279)
T cd00953         101 YYFP--GIPEEWLIKYFTDISS  120 (279)
T ss_pred             cCCC--CCCHHHHHHHHHHHHh
Confidence            8752  1135666666666655

This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=93.93  E-value=1.7  Score=36.47  Aligned_cols=135  Identities=18%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             HHHHHHHHhc--CCCEEEEec---cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcE
Q psy16780         54 SDVTWLKTIT--KLPIVLKGI---LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVD  121 (202)
Q Consensus        54 ~~i~~i~~~~--~~Pv~vK~~---~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ip  121 (202)
                      .+|++|++.+  +.|+...+-   ..+..    +..+...|+|+|.++-.+....   ....+.+..+.+.+   ..+..
T Consensus        40 ~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~---~~a~e~l~~v~~av~~~~~~~~  116 (235)
T PF04476_consen   40 WVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY---DEAIEALEAVVRAVKDFDPDKK  116 (235)
T ss_pred             HHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH---HHHHHHHHHHHHHHhhhCCCcE
Confidence            3666777666  478887653   23333    3344568999999976543221   11233343333332   33566


Q ss_pred             EEEecC--C-----CCHHHHHHHHH-hCCCEEEEcHHHHHH---hhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780        122 VYLDGG--V-----RYGTDVFKALA-LGAKMVFVGRPALWG---LAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ  190 (202)
Q Consensus       122 iia~GG--I-----~~~~D~~kal~-~GAd~V~ig~~~l~~---~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~  190 (202)
                      +++++=  -     -++.++.+..+ +|++++|+-|..=-+   ..+-..+.+.+|++.- +..-....+.|.-+.+++.
T Consensus       117 vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~a-r~~gL~~aLAGSL~~~di~  195 (235)
T PF04476_consen  117 VVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQA-RAHGLMCALAGSLRFEDIP  195 (235)
T ss_pred             EEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHH-HHccchhhccccCChhHHH
Confidence            777652  1     24567776654 799999998742100   0012345566665543 3444556666766666655


Q ss_pred             hc
Q psy16780        191 RE  192 (202)
Q Consensus       191 ~~  192 (202)
                      .-
T Consensus       196 ~L  197 (235)
T PF04476_consen  196 RL  197 (235)
T ss_pred             HH
Confidence            43

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=93.92  E-value=0.96  Score=39.63  Aligned_cols=99  Identities=18%  Similarity=0.113  Sum_probs=62.5

Q ss_pred             CccccHHHHHHHHHhcC-CCEEEEec------cCHHHHHHHH-HcCCcEEEeeccCcCC--CCCccchH----HHHHHHH
Q psy16780         48 DETINWSDVTWLKTITK-LPIVLKGI------LTAEDAKIGV-EMGASAIMVSNHGGRQ--LDYVPASI----EALPEIA  113 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~-~Pv~vK~~------~~~~~a~~l~-~aG~d~I~v~~~gg~~--~~~~~~~~----~~l~~i~  113 (202)
                      +|+ .++.++.+|+..+ .|+++-..      .+.+.+..+. ..++|++.++-.....  ...+..++    +.+..++
T Consensus        96 ~~e-~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~  174 (326)
T cd02811          96 DPE-LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELV  174 (326)
T ss_pred             Chh-hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHH
Confidence            444 3467778887775 88876542      1566665544 4789999885422111  11122233    3456666


Q ss_pred             HHhCCCcEEEE--ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        114 KAVGHKVDVYL--DGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       114 ~~~~~~ipiia--~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.+  ++||+.  +|--.+.+++.++..+|+|++.++.
T Consensus       175 ~~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG  210 (326)
T cd02811         175 KAL--SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG  210 (326)
T ss_pred             Hhc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence            655  799998  4444678888878889999999754

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=93.89  E-value=0.4  Score=40.75  Aligned_cols=71  Identities=31%  Similarity=0.290  Sum_probs=49.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.++...++||++|.|-.-.  .+  -..+.+.|..+++.+  ++|+..--=|-++.++.++..+|||+|.+=..++
T Consensus        72 ~~a~~y~~~GA~aiSVlTe~--~~--F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L  142 (254)
T PF00218_consen   72 EIAKAYEEAGAAAISVLTEP--KF--FGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL  142 (254)
T ss_dssp             HHHHHHHHTT-SEEEEE--S--CC--CHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred             HHHHHHHhcCCCEEEEECCC--CC--CCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence            66788899999999985421  11  123567778887777  8999999999999999999999999998766554

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=93.87  E-value=1.9  Score=38.24  Aligned_cols=111  Identities=12%  Similarity=0.140  Sum_probs=74.1

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCCc---c----chHHHHHHHHHHhCCCcEEEEecCCCCH-------------
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYV---P----ASIEALPEIAKAVGHKVDVYLDGGVRYG-------------  131 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~---~----~~~~~l~~i~~~~~~~ipiia~GGI~~~-------------  131 (202)
                      .+|++|+... +.|+|.+-++-+.-...+.+   |    -+++.|.++++.+ +++|++.-||=..+             
T Consensus       171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~  249 (347)
T TIGR01521       171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE  249 (347)
T ss_pred             CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence            3678887776 57999998865321112111   2    3566788888776 35999999975544             


Q ss_pred             ---------HHHHHHHHhCCCEEEEcHHHHHHh----h---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        132 ---------TDVFKALALGAKMVFVGRPALWGL----A---HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       132 ---------~D~~kal~~GAd~V~ig~~~l~~~----~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                               +++.+++.+|..=|-++|-+-.+.    .   ...      ..-.....+.+++-.+..|..+|..
T Consensus       250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~  324 (347)
T TIGR01521       250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTA  324 (347)
T ss_pred             ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                     889999999999999999655431    1   111      1223444566777788888888854

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=93.85  E-value=1  Score=36.87  Aligned_cols=49  Identities=14%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEecc-------C-------HHHHHHHHHcCCcEEEeec
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGIL-------T-------AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~-------~-------~~~a~~l~~aG~d~I~v~~   93 (202)
                      +.|-...+...++.+++..++||.+=++.       +       .++++.+.++|+|+++++-
T Consensus        31 ~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~   93 (201)
T PF03932_consen   31 EVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGA   93 (201)
T ss_dssp             GGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--
T ss_pred             cCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEe
Confidence            44445556688999999999998875541       2       2557889999999999863

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=93.83  E-value=0.87  Score=39.14  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCC-CCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQ-LDYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~-~~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      ++.++++.+ ++.||.+|-.  .++++    ++.+.+.|-..|.+.-+|-+- ...-..+...++.+++.. ...|||.+
T Consensus       120 tdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~D  197 (281)
T PRK12457        120 TDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFD  197 (281)
T ss_pred             HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEe
Confidence            456666654 5899999965  66655    677788999999998776441 111233555666665532 36899984


Q ss_pred             ---------------cCCCCH--HHHHHHHHhCCCEEEEcH
Q psy16780        126 ---------------GGVRYG--TDVFKALALGAKMVFVGR  149 (202)
Q Consensus       126 ---------------GGI~~~--~D~~kal~~GAd~V~ig~  149 (202)
                                     ||-|..  .=+..++++|||++++=.
T Consensus       198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv  238 (281)
T PRK12457        198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA  238 (281)
T ss_pred             CCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence                           555542  223456678999999865

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=93.82  E-value=0.26  Score=39.34  Aligned_cols=97  Identities=18%  Similarity=0.133  Sum_probs=64.2

Q ss_pred             HHhhhccCcccc----HHHHHHHHHhcCCCEEEEec-c---CHHH-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780         41 AYITSQLDETIN----WSDVTWLKTITKLPIVLKGI-L---TAED-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE  111 (202)
Q Consensus        41 ~~~~~~~d~~~~----~~~i~~i~~~~~~Pv~vK~~-~---~~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~  111 (202)
                      +++-.+..|+..    -..++.-++ .+.+.+-+.- .   ..+- ...+.+.++|+|.+  -+|       --...+.+
T Consensus        69 ~fi~~~~~pdGIISTk~~~i~~Akk-~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv--LPG-------v~Pkvi~~  138 (181)
T COG1954          69 EFIKEVIKPDGIISTKSNVIKKAKK-LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV--LPG-------VMPKVIKE  138 (181)
T ss_pred             HHHHHhccCCeeEEccHHHHHHHHH-cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE--cCc-------ccHHHHHH
Confidence            455555555552    224444443 3667666643 2   2232 35566789999988  222       13456677


Q ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       112 i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.+..  .+|||+-|=|++-+|+..|+.+||-+|.-..
T Consensus       139 i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs~  174 (181)
T COG1954         139 ITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTSN  174 (181)
T ss_pred             HHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence            77666  8999999999999999999999998887543

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=93.80  E-value=1  Score=40.09  Aligned_cols=96  Identities=23%  Similarity=0.254  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCC---CccchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLD---YVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ++.++++.+ ++.||++|-.  .+.++.    +.+.+.|.+-|++.-+|-+...   ....++..+..+++..  .+||+
T Consensus       215 ~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~  291 (360)
T PRK12595        215 FELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVM  291 (360)
T ss_pred             HHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEE
Confidence            456777764 5899999965  366664    4556688866666533322221   1123667788887765  69999


Q ss_pred             Eec----CCCCHH--HHHHHHHhCCCEEEEcHHH
Q psy16780        124 LDG----GVRYGT--DVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       124 a~G----GI~~~~--D~~kal~~GAd~V~ig~~~  151 (202)
                      .+.    |-+...  -...|+++|||++++=+.|
T Consensus       292 ~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~  325 (360)
T PRK12595        292 VDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP  325 (360)
T ss_pred             EeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence            943    222222  3445778999999998866

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=93.69  E-value=0.75  Score=40.01  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEecc---C-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGIL---T-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~---~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      ...|+...+.|+++|+.++.|+-+-...   . .+.++.+.+.|++.|.++.  |      .|. ..+.++++.   .+.
T Consensus        44 ~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~--g------~p~-~~i~~lk~~---g~~  111 (307)
T TIGR03151        44 NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA--G------NPG-KYIPRLKEN---GVK  111 (307)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC--C------CcH-HHHHHHHHc---CCE
Confidence            3456667778999999889998887652   2 3445778899999988742  2      122 345555432   467


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        122 VYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      |++  -+.+.+++.++..+|||.+.+
T Consensus       112 v~~--~v~s~~~a~~a~~~GaD~Ivv  135 (307)
T TIGR03151       112 VIP--VVASVALAKRMEKAGADAVIA  135 (307)
T ss_pred             EEE--EcCCHHHHHHHHHcCCCEEEE
Confidence            765  568899999999999999987

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=93.69  E-value=1.3  Score=39.08  Aligned_cols=127  Identities=20%  Similarity=0.248  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCC-c--cchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDY-V--PASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~-~--~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .+.++++. .++.||++|-.  .+.++    ++.+...|-+-+.+.-.|.+.... .  ..++..+..+++..  ..|||
T Consensus       190 ~~LL~~va-~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi  266 (335)
T PRK08673        190 FDLLKEVG-KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI  266 (335)
T ss_pred             HHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence            44555555 35899999965  35555    355667888777776555444422 1  22445566666555  69998


Q ss_pred             Eec----CCCC--HHHHHHHHHhCCCEEEEcHHHHHHh-hhcChHHH-HHHHHHHHHHHHHHHHHhC
Q psy16780        124 LDG----GVRY--GTDVFKALALGAKMVFVGRPALWGL-AHSGKSGV-RKVLDILINEFDQALALSG  182 (202)
Q Consensus       124 a~G----GI~~--~~D~~kal~~GAd~V~ig~~~l~~~-~~~G~~~v-~~~i~~l~~~L~~~m~~~G  182 (202)
                      ++-    |.+.  +.-...|+++|||++++=..+--.- .+.|+..+ -+-++.+.++++..-...|
T Consensus       267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g  333 (335)
T PRK08673        267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG  333 (335)
T ss_pred             EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence            843    3322  2445677889999999877543210 12332211 1334556666666555554

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=93.65  E-value=0.42  Score=39.52  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV  134 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~  134 (202)
                      .+..+.+..++|++|-     +..+.+.+.|+|+|+++..          + ..+...++.+++.. +|+. .+++.+++
T Consensus        56 ~~~~lc~~~~v~liIN-----d~~dlA~~~~AdGVHlGq~----------D-~~~~~ar~~~~~~~-iIG~-S~h~~eea  117 (211)
T COG0352          56 KLRALCQKYGVPLIIN-----DRVDLALAVGADGVHLGQD----------D-MPLAEARELLGPGL-IIGL-STHDLEEA  117 (211)
T ss_pred             HHHHHHHHhCCeEEec-----CcHHHHHhCCCCEEEcCCc----------c-cchHHHHHhcCCCC-EEEe-ecCCHHHH
Confidence            4555666678999985     3345566899999988431          0 11233344443222 4443 46799999


Q ss_pred             HHHHHhCCCEEEEcHH
Q psy16780        135 FKALALGAKMVFVGRP  150 (202)
Q Consensus       135 ~kal~~GAd~V~ig~~  150 (202)
                      .++..+|||.|++|.-
T Consensus       118 ~~A~~~g~DYv~~Gpi  133 (211)
T COG0352         118 LEAEELGADYVGLGPI  133 (211)
T ss_pred             HHHHhcCCCEEEECCc
Confidence            9999999999999973

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=93.64  E-value=1  Score=40.23  Aligned_cols=92  Identities=25%  Similarity=0.299  Sum_probs=62.6

Q ss_pred             HHHHHHHhc-CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-CC-------------------------
Q psy16780         55 DVTWLKTIT-KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-RQ-------------------------   98 (202)
Q Consensus        55 ~i~~i~~~~-~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~~-------------------------   98 (202)
                      -+++|.+.. +-|.+.-+-      .+.+.++++.++|++++.++-.   .| |.                         
T Consensus       122 slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~  201 (367)
T TIGR02708       122 DLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAG  201 (367)
T ss_pred             CHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCc
Confidence            445555542 456665432      3456688999999999988531   11 10                         


Q ss_pred             --CC------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         99 --LD------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        99 --~~------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                        ..      ....+|+.+.++++..  ++||+.= ||.+.+|+.++..+|+|+|.++.
T Consensus       202 ~~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~  257 (367)
T TIGR02708       202 KSMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN  257 (367)
T ss_pred             cchhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence              00      0123567788887766  7999976 69999999999999999997764

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=93.60  E-value=1.3  Score=36.34  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=57.2

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ++...+.++++++..+.|+.+....      ..+.++.+.++|+|+|.+...         .....+..+++ .  .+++
T Consensus        38 ~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---------~~~~~~~~~~~-~--~i~~  105 (236)
T cd04730          38 PEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---------PPAEVVERLKA-A--GIKV  105 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---------CCHHHHHHHHH-c--CCEE
Confidence            3444567788877665677666552      235678899999999998432         12233444432 2  5777


Q ss_pred             EEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        123 YLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +.  .+.+.+++.++...|+|.+.+
T Consensus       106 i~--~v~~~~~~~~~~~~gad~i~~  128 (236)
T cd04730         106 IP--TVTSVEEARKAEAAGADALVA  128 (236)
T ss_pred             EE--eCCCHHHHHHHHHcCCCEEEE
Confidence            66  367888888888899999876

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=93.55  E-value=0.41  Score=39.24  Aligned_cols=42  Identities=24%  Similarity=0.183  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCEE--EEecc---CH-HHHHHHHHcCCcEEEeeccCc
Q psy16780         54 SDVTWLKTITKLPIV--LKGIL---TA-EDAKIGVEMGASAIMVSNHGG   96 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~--vK~~~---~~-~~a~~l~~aG~d~I~v~~~gg   96 (202)
                      +.++++++... |++  +|..-   +. ..++.+.++|+|.++|+..+|
T Consensus        40 ~~v~~l~~~~~-~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g   87 (213)
T TIGR01740        40 KIIDELAKLNK-LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG   87 (213)
T ss_pred             HHHHHHHHcCC-CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            68889988643 554  45432   22 335667899999999986544

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=93.51  E-value=0.18  Score=41.50  Aligned_cols=41  Identities=27%  Similarity=0.302  Sum_probs=36.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEee
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVS   92 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~   92 (202)
                      ..+.++++++.++.|+++.+- .++++++.+.++|+|+|+++
T Consensus       164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence            478999999999999999964 79999999999999999873

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=93.50  E-value=0.19  Score=41.83  Aligned_cols=42  Identities=29%  Similarity=0.299  Sum_probs=37.5

Q ss_pred             cHHHHHHHHHhc-CCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.+ +.|+++++ +.+.++++.+.++|+|.|++++
T Consensus       166 ~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs  209 (223)
T TIGR01768       166 PPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN  209 (223)
T ss_pred             CHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence            477999999998 99999986 4799999999999999999965

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=93.48  E-value=1.1  Score=38.63  Aligned_cols=86  Identities=23%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             HHhcCCCEEEEec-cCH----HHHHHHHHcC-CcEEEeecc------CcCCCCCcc-chHHHHHHHHHHhCCCcEEEE--
Q psy16780         60 KTITKLPIVLKGI-LTA----EDAKIGVEMG-ASAIMVSNH------GGRQLDYVP-ASIEALPEIAKAVGHKVDVYL--  124 (202)
Q Consensus        60 ~~~~~~Pv~vK~~-~~~----~~a~~l~~aG-~d~I~v~~~------gg~~~~~~~-~~~~~l~~i~~~~~~~ipiia--  124 (202)
                      ++..+.|+++=+. .++    +.++.+.++| +|+|.+.-+      ||..+...+ ...+.+..+++.+  ++||++  
T Consensus        87 ~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl  164 (301)
T PRK07259         87 LEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKL  164 (301)
T ss_pred             HhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence            3345789988664 344    3367788899 999998431      121111111 1233455555555  688887  


Q ss_pred             ecCCCCHHHHHHHHH-hCCCEEEE
Q psy16780        125 DGGVRYGTDVFKALA-LGAKMVFV  147 (202)
Q Consensus       125 ~GGI~~~~D~~kal~-~GAd~V~i  147 (202)
                      +..+.+..++++.+. .|+|++.+
T Consensus       165 ~~~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        165 TPNVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             CCCchhHHHHHHHHHHcCCCEEEE
Confidence            333445556666554 79998765

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=93.46  E-value=1.2  Score=38.04  Aligned_cols=91  Identities=21%  Similarity=0.161  Sum_probs=52.1

Q ss_pred             HHHHHHHhcCCCEEEEec-cCH----HHHHHHHHcCCcEEEeeccC------cCCCCCccc-hHHHHHHHHHHhCCCcEE
Q psy16780         55 DVTWLKTITKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNHG------GRQLDYVPA-SIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~g------g~~~~~~~~-~~~~l~~i~~~~~~~ipi  122 (202)
                      .+...++..+.|+++=+. .+.    +.++.+.++|+|+|.+.-+-      |..+...+. ..+.+..+++.+  ++||
T Consensus        80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv  157 (296)
T cd04740          80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPV  157 (296)
T ss_pred             HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCE
Confidence            344444445789988664 333    44677889999999985321      111111111 122344454444  6888


Q ss_pred             EE--ecCCCCHHHHHHHH-HhCCCEEEE
Q psy16780        123 YL--DGGVRYGTDVFKAL-ALGAKMVFV  147 (202)
Q Consensus       123 ia--~GGI~~~~D~~kal-~~GAd~V~i  147 (202)
                      ..  +....+..++++.+ ++|||++.+
T Consensus       158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         158 IVKLTPNVTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence            86  44444566666644 589998765

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB

Probab=93.41  E-value=1.1  Score=39.24  Aligned_cols=88  Identities=19%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      ++++-+=.+++.+.+..+.++|++.|...  -||-.++             .-+....+.++.+.+   +.+.-|+ ...
T Consensus       148 GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm-aAS  224 (313)
T cd00957         148 GIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM-GAS  224 (313)
T ss_pred             CCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE-ecc
Confidence            44444444467788888889999887653  2322111             113344455554433   2244455 456


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +|+..++.+  .+|+|.+-+.-.++..+.
T Consensus       225 fRn~~~v~~--laG~d~~Ti~p~ll~~L~  251 (313)
T cd00957         225 FRNIGQILA--LAGCDYLTISPALLEELK  251 (313)
T ss_pred             cCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence            999999987  579999999988887654

The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.

>PTZ00411 transaldolase-like protein; Provisional

Probab=93.40  E-value=1.6  Score=38.57  Aligned_cols=88  Identities=18%  Similarity=0.230  Sum_probs=56.4

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      ++++-+=.+++...+..+.++|++.|...  -||-.++             +.+....+.++.+.+   +.+. .|....
T Consensus       160 GI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T-~Im~AS  236 (333)
T PTZ00411        160 GIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT-IVMGAS  236 (333)
T ss_pred             CCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe-EEEecc
Confidence            45555545567788888899999887753  2322111             223344555554433   2233 455567


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +|+..++..  .+|||.+-+.-.++..+.
T Consensus       237 fRn~~qi~~--laG~D~lTi~p~ll~~L~  263 (333)
T PTZ00411        237 FRNTGEILE--LAGCDKLTISPKLLEELA  263 (333)
T ss_pred             cCCHHHHHH--HHCCCEEeCCHHHHHHHH
Confidence            999999987  389999999988887654

>KOG2550|consensus

Probab=93.32  E-value=0.44  Score=43.11  Aligned_cols=68  Identities=18%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE--EEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV--FVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V--~ig~  149 (202)
                      +....+.++|+|.|+++...|..    .-.++.+..+++.+ ++.+||+ |.+-+.+.+...+++|||..  +||+
T Consensus       254 ~rl~ll~~aGvdvviLDSSqGnS----~~qiemik~iK~~y-P~l~Via-GNVVT~~qa~nLI~aGaDgLrVGMGs  323 (503)
T KOG2550|consen  254 ERLDLLVQAGVDVVILDSSQGNS----IYQLEMIKYIKETY-PDLQIIA-GNVVTKEQAANLIAAGADGLRVGMGS  323 (503)
T ss_pred             HHHHHhhhcCCcEEEEecCCCcc----hhHHHHHHHHHhhC-CCceeec-cceeeHHHHHHHHHccCceeEecccc
Confidence            44567889999999998765432    22445566666665 4788888 88999999999999999974  4444

>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=93.31  E-value=0.94  Score=39.69  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=41.3

Q ss_pred             CcE-EEEecCCCCH---HHHHHHHHhCC--CEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        119 KVD-VYLDGGVRYG---TDVFKALALGA--KMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       119 ~ip-iia~GGI~~~---~D~~kal~~GA--d~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      .+| |+.|+|+...   +.+.-|..+||  ++|..||+.-+.       ++..++..=....+.+|...|..+|++|+..
T Consensus       240 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~-------~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~v  312 (324)
T PRK12399        240 HLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLCGRATWAG-------SVKVYIEQGEAAAREWLRTEGFENIDELNKV  312 (324)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEeehhhhHh-------hhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            577 5568888652   33334445799  799999987642       2222222233455666777777777777654

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=93.30  E-value=2.3  Score=37.74  Aligned_cols=111  Identities=11%  Similarity=0.145  Sum_probs=73.5

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCC---cc----chHHHHHHHHHHhCCCcEEEEecCCC---------------
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDY---VP----ASIEALPEIAKAVGHKVDVYLDGGVR---------------  129 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~---~~----~~~~~l~~i~~~~~~~ipiia~GGI~---------------  129 (202)
                      .+|++|+... +.|+|.+-++.+.-.....   .|    -+++.|.++++.+ +++|++.-||=.               
T Consensus       173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v-~~vPLVLHGgSG~~~~~~~~~~~~g~~  251 (347)
T PRK09196        173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARL-PNTHLVMHGSSSVPQELLDIINEYGGD  251 (347)
T ss_pred             CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcC-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence            3588888776 5899999887532111111   12    3566788888877 259999988643               


Q ss_pred             -------CHHHHHHHHHhCCCEEEEcHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        130 -------YGTDVFKALALGAKMVFVGRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       130 -------~~~D~~kal~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                             ..+++.+++.+|..=|-++|-+..+..       ...      ..-.....+.+++.++..|..+|..
T Consensus       252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~  326 (347)
T PRK09196        252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTA  326 (347)
T ss_pred             ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                   347789999999999999996654311       011      1223344556777788888888854

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=93.28  E-value=0.84  Score=38.42  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.+++    +.+.+.|++.+.---        .+.+++.+.++++..  .
T Consensus       111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~--------~~~d~~~~~~l~~~~--~  180 (265)
T cd03315         111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPL--------PADDLEGRAALARAT--D  180 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCC--------CcccHHHHHHHHhhC--C
Confidence            4445567888888876  456655532  344443    556677777775311        112456667777665  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      +||++++.+.+..|+.+++..+ +|.|++-
T Consensus       181 ipia~dE~~~~~~~~~~~i~~~~~d~v~~k  210 (265)
T cd03315         181 TPIMADESAFTPHDAFRELALGAADAVNIK  210 (265)
T ss_pred             CCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence            9999999999999999999876 8988874

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed

Probab=93.20  E-value=0.83  Score=40.46  Aligned_cols=93  Identities=12%  Similarity=0.094  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccC----HHHHHHHHHc---CCcEEEeeccCcCCCCCccc-hHHHHHHHHH---Hh-CC
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILT----AEDAKIGVEM---GASAIMVSNHGGRQLDYVPA-SIEALPEIAK---AV-GH  118 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~----~~~a~~l~~a---G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~---~~-~~  118 (202)
                      .+.++.+++..+  .|+++ ++-+    .+++..+.+.   |+|+|.+++.+.     .+. ..+.+..+++   .. .+
T Consensus       187 ~~A~~~~~~~~p~~~~i~v-evdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~-----~~g~l~~~v~~vr~~ld~~g~~  260 (343)
T PRK08662        187 VEAWKAFDEVVPPDVPRIA-LVDTFKDEREEALRAAEALGDRLDGVRLDTPSS-----RRGNFRKIVREVRWTLDIRGYE  260 (343)
T ss_pred             HHHHHHHHHHCCCCCCEEE-EEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCC-----CCccHHHHHHHHHHHHHhcCCC
Confidence            446777777664  56665 3322    3555555555   899999987531     011 1223333332   22 24


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++.|.+|||| +.+.+.+.... +|.+.+|+.+..
T Consensus       261 ~v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~  293 (343)
T PRK08662        261 HVKIFVSGGL-DPERIRELRDV-VDGFGVGTYISF  293 (343)
T ss_pred             CeEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccC
Confidence            5889999999 78888888788 999999997764

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=93.19  E-value=1.4  Score=39.10  Aligned_cols=90  Identities=21%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             HHHHHHHhc-CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-CC------------------CC----C
Q psy16780         55 DVTWLKTIT-KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-RQ------------------LD----Y  101 (202)
Q Consensus        55 ~i~~i~~~~-~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~~------------------~~----~  101 (202)
                      -+++|.+.. +-|.++++-      .+.+.++++.++|+..++++-.   .| |.                  .+    .
T Consensus       114 s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~  193 (351)
T cd04737         114 SLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGK  193 (351)
T ss_pred             CHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhcccccc
Confidence            344444444 457777754      2456678889999999888631   11 10                  00    0


Q ss_pred             ------------ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        102 ------------VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       102 ------------~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                                  ...+|+.+..+++..  ++||+.- ||.+++|+.++...|+|++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v  248 (351)
T cd04737         194 GKGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV  248 (351)
T ss_pred             CcchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence                        113566677777766  7899987 589999999999999999988

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=93.19  E-value=1.2  Score=40.16  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhc-CCCEEEEec--cCH----HHHHHHHHcCCcEEEeecc--CcCC-CCCc---cchHHHHHHHHHHhC--
Q psy16780         53 WSDVTWLKTIT-KLPIVLKGI--LTA----EDAKIGVEMGASAIMVSNH--GGRQ-LDYV---PASIEALPEIAKAVG--  117 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~vK~~--~~~----~~a~~l~~aG~d~I~v~~~--gg~~-~~~~---~~~~~~l~~i~~~~~--  117 (202)
                      .+.+..+++.+ ++|||+=+.  .+.    +.++.+.++|+|++.+.-.  .+.. .+.+   ..+.+.+.++.+.++  
T Consensus       101 l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~  180 (385)
T PLN02495        101 LAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK  180 (385)
T ss_pred             HHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh
Confidence            33466676666 679998763  343    4577888999999998532  1110 1111   123455544433332  


Q ss_pred             CCcEEEE--ecCCCCHHHHHHHH-HhCCCEEEEcHHHH
Q psy16780        118 HKVDVYL--DGGVRYGTDVFKAL-ALGAKMVFVGRPAL  152 (202)
Q Consensus       118 ~~ipiia--~GGI~~~~D~~kal-~~GAd~V~ig~~~l  152 (202)
                      .++||++  +-.+.+..++++++ +.|||+|.+--.+.
T Consensus       181 ~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~  218 (385)
T PLN02495        181 ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM  218 (385)
T ss_pred             hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence            1689888  66777788888854 57999998865443

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=93.17  E-value=0.82  Score=40.85  Aligned_cols=114  Identities=13%  Similarity=-0.003  Sum_probs=68.8

Q ss_pred             hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEec-----cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHH
Q psy16780         38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGI-----LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIE  107 (202)
Q Consensus        38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~  107 (202)
                      -...++....-|.|-.+-++++....+-|++.-..     +++    +.+..+.+.|+|+|...+..|.+...... -..
T Consensus       103 ~P~~~~~~f~GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~  182 (367)
T cd08205         103 LPDSLLAAFPGPRFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVR  182 (367)
T ss_pred             CCHHHHhhCCCCCCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHH
Confidence            33467778888999888888888877888765432     343    44677888999999887654432211111 112


Q ss_pred             HHHHHHHHhC----CCcEEEEecCCCCHHHHH----HHHHhCCCEEEEcHHHH
Q psy16780        108 ALPEIAKAVG----HKVDVYLDGGVRYGTDVF----KALALGAKMVFVGRPAL  152 (202)
Q Consensus       108 ~l~~i~~~~~----~~ipiia~GGI~~~~D~~----kal~~GAd~V~ig~~~l  152 (202)
                      .+.++.+...    .+.+++++.. .+..++.    .+..+|||+||+.-++.
T Consensus       183 ~v~~av~~a~~~TG~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~~~  234 (367)
T cd08205         183 ACMEAVRRANEETGRKTLYAPNIT-GDPDELRRRADRAVEAGANALLINPNLV  234 (367)
T ss_pred             HHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence            2333333332    3344444432 3345554    34458999999998765

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=93.16  E-value=1.1  Score=39.36  Aligned_cols=67  Identities=22%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             CcE-EEEecCCCCH---HHHHHHHHhCCC--EEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        119 KVD-VYLDGGVRYG---TDVFKALALGAK--MVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       119 ~ip-iia~GGI~~~---~D~~kal~~GAd--~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      .+| |+.|+|+...   +.+.-|..+||+  +|..||+.-+       +++.-++..=....+.+|...|..+|++|+..
T Consensus       242 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGvL~GRAtW~-------~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~v  314 (329)
T PRK04161        242 HLPYIYLSAGVSAKLFQETLVFAAEAGAQFNGVLCGRATWA-------GSVPVYITEGEEAARKWLCTEGFQNIDELNRV  314 (329)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhcCCCcccEEeehhhhh-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            577 5568888652   233344457998  9999998754       22322322334556677777788888877654

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=93.15  E-value=2.5  Score=37.23  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=73.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHH----HHHHHcCCc---EEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDA----KIGVEMGAS---AIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a----~~l~~aG~d---~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .+..|+++.+ ++.||+++.. .+.+++    +.+.+.|.+   .+.+.............++..+..+++.+  .+||.
T Consensus       122 n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG  198 (329)
T TIGR03569       122 NAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVG  198 (329)
T ss_pred             CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEE
Confidence            3567777775 4899999965 455554    445567875   44444322111111123556677777766  68999


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHH----HHHHHHHHHHHHHHHHHhCCC
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGV----RKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v----~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      .|+--....-...|+++||+.+  =+.|-..-...|++.-    -+-+..|.++++..-..+|..
T Consensus       199 ~SdHt~G~~~~~aAvalGA~iI--EkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~  261 (329)
T TIGR03569       199 YSDHTLGIEAPIAAVALGATVI--EKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG  261 (329)
T ss_pred             ECCCCccHHHHHHHHHcCCCEE--EeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence            8764333344456777899944  3333322122333211    133567777788887777753

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.10  E-value=0.63  Score=37.51  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      |++++.+.+.-=+||+-...  ...+.++.+.+.|++.|.+.-.+       +...+.+..+++..  ..-.+..|-+.+
T Consensus         3 ~~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~-------~~~~e~~~~~~~~~--~~~~~g~gtvl~   73 (187)
T PRK07455          3 QDWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNS-------DQPAELISQLREKL--PECIIGTGTILT   73 (187)
T ss_pred             hHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-------CCHHHHHHHHHHhC--CCcEEeEEEEEc
Confidence            56666665432234432111  12355788899999999985421       23344555554433  343466788999


Q ss_pred             HHHHHHHHHhCCCEEEEcH
Q psy16780        131 GTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~  149 (202)
                      .+++-.++++|||+|.++.
T Consensus        74 ~d~~~~A~~~gAdgv~~p~   92 (187)
T PRK07455         74 LEDLEEAIAAGAQFCFTPH   92 (187)
T ss_pred             HHHHHHHHHcCCCEEECCC
Confidence            9999999999999995443

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=93.05  E-value=2.6  Score=37.47  Aligned_cols=112  Identities=12%  Similarity=0.193  Sum_probs=73.5

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCCc---c----chHHHHHHHHHHhCCCcEEEEecCCCCH-------------
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYV---P----ASIEALPEIAKAVGHKVDVYLDGGVRYG-------------  131 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~---~----~~~~~l~~i~~~~~~~ipiia~GGI~~~-------------  131 (202)
                      .+|++|.... +.|+|.+-++.+.-...+.+   |    -+++.+.++++.+ +++|++.-||=..+             
T Consensus       173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v-~~vPLVLHGgSGvp~~~~~~~~~~g~~  251 (347)
T PRK13399        173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL-PNTHLVMHGSSSVPQELQEIINAYGGK  251 (347)
T ss_pred             CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence            3588888776 47999998865221112111   1    3566788888877 25999999875544             


Q ss_pred             ---------HHHHHHHHhCCCEEEEcHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy16780        132 ---------TDVFKALALGAKMVFVGRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCTS  185 (202)
Q Consensus       132 ---------~D~~kal~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~~  185 (202)
                               +++.+++.+|..=|-++|-+-.+..       .+.      ..-.....+.+++-++..|..+|..+
T Consensus       252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~  327 (347)
T PRK13399        252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG  327 (347)
T ss_pred             ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                     8899999999999999996543311       011      12233444567777777888888643

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.04  E-value=1.5  Score=37.20  Aligned_cols=92  Identities=22%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             HHHHHHHh-cCCCEEEEec-cCH----HHHHHHHHcCCcEEEeeccC-----cCCCCCccc-hHHHHHHHHHHhCCCcEE
Q psy16780         55 DVTWLKTI-TKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNHG-----GRQLDYVPA-SIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        55 ~i~~i~~~-~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~g-----g~~~~~~~~-~~~~l~~i~~~~~~~ipi  122 (202)
                      .+...++. .+.|+++=+. .++    +.++.+.++|+|+|.+..+-     ++.+...+. ..+.+..+++.+  ++||
T Consensus        88 ~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv  165 (289)
T cd02810          88 DIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPL  165 (289)
T ss_pred             HHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCE
Confidence            44444444 4789887654 333    44678888999999986421     111111111 123345555555  6787


Q ss_pred             EE--ecCCC--CHHHHHHHH-HhCCCEEEEc
Q psy16780        123 YL--DGGVR--YGTDVFKAL-ALGAKMVFVG  148 (202)
Q Consensus       123 ia--~GGI~--~~~D~~kal-~~GAd~V~ig  148 (202)
                      ++  ++++.  +..++++++ .+|||++.+.
T Consensus       166 ~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         166 LVKLSPYFDLEDIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            76  34433  234445544 4799999875

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=93.00  E-value=0.24  Score=41.53  Aligned_cols=42  Identities=29%  Similarity=0.373  Sum_probs=37.4

Q ss_pred             cHHHHHHHHHhcCC-CEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKL-PIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~-Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.++. |+++.+ +.++++++.+.++|+|+|++++
T Consensus       171 ~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS  214 (232)
T PRK04169        171 PPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN  214 (232)
T ss_pred             CHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence            47899999999988 999986 4789999999999999999965

>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []

Probab=92.99  E-value=0.44  Score=38.48  Aligned_cols=81  Identities=23%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH-HHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI-AKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i-~~~~~~~ipiia~GGI~~~  131 (202)
                      ..|++|.+.+++||..|.+ -..-+|+.|...|+|+|+=|--- |     |.+..  ..+ +..+  ++|.++  |-++.
T Consensus        61 ~~I~eI~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDESEVL-T-----pAD~~--~HI~K~~F--~vPFVc--GarnL  128 (208)
T PF01680_consen   61 KMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-T-----PADEE--NHIDKHNF--KVPFVC--GARNL  128 (208)
T ss_dssp             HHHHHHHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEETTS--------S-SS------GGG---SS-EEE--EESSH
T ss_pred             HHHHHHHHheEeceeeccccceeehhhhHHHhCCceecccccc-c-----ccccc--ccccchhC--CCCeEe--cCCCH
Confidence            3799999999999999987 45788999999999999865310 0     11111  122 1223  789887  67899


Q ss_pred             HHHHHHHHhCCCEEE
Q psy16780        132 TDVFKALALGAKMVF  146 (202)
Q Consensus       132 ~D~~kal~~GAd~V~  146 (202)
                      .+++.-+.-||..+=
T Consensus       129 GEALRRI~EGAaMIR  143 (208)
T PF01680_consen  129 GEALRRIAEGAAMIR  143 (208)
T ss_dssp             HHHHHHHHTT-SEEE
T ss_pred             HHHHhhHHhhhhhhc
Confidence            999999999987653

Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....

>PRK02227 hypothetical protein; Provisional

Probab=92.94  E-value=2.7  Score=35.39  Aligned_cols=130  Identities=14%  Similarity=0.105  Sum_probs=69.7

Q ss_pred             HHHHHHHhcC--CCEEEEec---cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH---HhCCCcEE
Q psy16780         55 DVTWLKTITK--LPIVLKGI---LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK---AVGHKVDV  122 (202)
Q Consensus        55 ~i~~i~~~~~--~Pv~vK~~---~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~---~~~~~ipi  122 (202)
                      +|++|++.++  .||...+-   ..+    ..+..+...|+|+|.|+-.+....   ....+.+..+.+   ....+..+
T Consensus        41 vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~---~~~~~~~~~v~~a~~~~~~~~~v  117 (238)
T PRK02227         41 VIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGKTA---EEAVEVMKAVVRAVKDLDPGKIV  117 (238)
T ss_pred             HHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcH---HHHHHHHHHHHHhhhhcCCCCeE
Confidence            6666666663  78887654   223    224556678999999965432211   111222322222   22335666


Q ss_pred             EEec-----CCC--CHHHHHHHHH-hCCCEEEEcHH------HHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHh
Q psy16780        123 YLDG-----GVR--YGTDVFKALA-LGAKMVFVGRP------ALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGE  188 (202)
Q Consensus       123 ia~G-----GI~--~~~D~~kal~-~GAd~V~ig~~------~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~e  188 (202)
                      ++++     .+.  ++.++.+..+ +|++++|+-|.      ++.   .-+.+.+.+|++.. +..-.+..+.|.-.+++
T Consensus       118 Vav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd---~l~~~~L~~Fv~~a-r~~Gl~~gLAGSL~~~d  193 (238)
T PRK02227        118 VAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFD---HMDEEELAEFVAEA-RSHGLMSALAGSLKFED  193 (238)
T ss_pred             EEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHh---hCCHHHHHHHHHHH-HHcccHhHhcccCchhh
Confidence            6654     121  4455555554 89999999874      221   12345666665543 33344555666655555


Q ss_pred             hhh
Q psy16780        189 IQR  191 (202)
Q Consensus       189 l~~  191 (202)
                      +..
T Consensus       194 ip~  196 (238)
T PRK02227        194 IPA  196 (238)
T ss_pred             HHH
Confidence            543

>TIGR01232 lacD tagatose 1,6-diphosphate aldolase

Probab=92.93  E-value=1.1  Score=39.24  Aligned_cols=67  Identities=21%  Similarity=0.312  Sum_probs=41.3

Q ss_pred             CcE-EEEecCCCC---HHHHHHHHHhCC--CEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        119 KVD-VYLDGGVRY---GTDVFKALALGA--KMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       119 ~ip-iia~GGI~~---~~D~~kal~~GA--d~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      .+| |+.|+|+..   .+.+.-|..+||  ++|..||+.-+.       ++..++..=....+.+|...|..+|++|+..
T Consensus       241 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~-------~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~v  313 (325)
T TIGR01232       241 HLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSG-------AVQVYIEQGEDAAREWLRTTGFKNIDDLNKV  313 (325)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEeehhhhHh-------hhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            677 556888865   233334445799  799999987642       2222322333455667777777777777654

This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=92.93  E-value=1.4  Score=39.30  Aligned_cols=97  Identities=14%  Similarity=0.113  Sum_probs=61.9

Q ss_pred             HHHHHHHHhcC-CCEEEEecc----CHHHHHHHHHc-CCcE--EEeeccCcCCCC--------------CccchHHHHHH
Q psy16780         54 SDVTWLKTITK-LPIVLKGIL----TAEDAKIGVEM-GASA--IMVSNHGGRQLD--------------YVPASIEALPE  111 (202)
Q Consensus        54 ~~i~~i~~~~~-~Pv~vK~~~----~~~~a~~l~~a-G~d~--I~v~~~gg~~~~--------------~~~~~~~~l~~  111 (202)
                      +.++..++.++ .|+++ ++-    +.+++..+.++ |.|.  |.++.+|. ++|              ...-+.+.+.+
T Consensus       191 ~A~~a~~~~~Pe~~~iv-lVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gd-l~DK~~~~~~~~~~~~~~~G~~~~l~~~  268 (352)
T PRK07188        191 EACKAYHKTFPEDELIA-LVDYNNDVITDSLKVAREFGDKLKGVRVDTSKN-MIDKYFIRHPEVLGTFDPRGVNPELIKA  268 (352)
T ss_pred             HHHHHHHHHCCCCCeEE-EEecCcccHHHHHHHHHHhCCCccEEEeCCcch-HhhhhcccccccccccccccccHHHHHH
Confidence            45666666663 35654 432    56666666665 8777  77765432 111              01124455566


Q ss_pred             HHHHh---C-CCcEEEEecCCCCHHHHHHHHHhC--CCEEEEcHHHHH
Q psy16780        112 IAKAV---G-HKVDVYLDGGVRYGTDVFKALALG--AKMVFVGRPALW  153 (202)
Q Consensus       112 i~~~~---~-~~ipiia~GGI~~~~D~~kal~~G--Ad~V~ig~~~l~  153 (202)
                      +++.+   . +++.|++|||| +...+.+..+.|  +|..++|+.+..
T Consensus       269 vr~~Ld~~g~~~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~  315 (352)
T PRK07188        269 LRKALDENGGKHVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLK  315 (352)
T ss_pred             HHHHHhhCCCCCcEEEEeCCC-CHHHHHHHHHcCCCccEEecCccccc
Confidence            65554   2 57889999997 677788887889  699999998764

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=92.65  E-value=0.83  Score=38.68  Aligned_cols=73  Identities=19%  Similarity=0.188  Sum_probs=51.4

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE-----ecCCC-CH-------HHHHHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL-----DGGVR-YG-------TDVFKALA  139 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia-----~GGI~-~~-------~D~~kal~  139 (202)
                      .+++++..+.+.|||.|.+...-  ...+-.|+...+..+++.+  ++||..     .|++. |.       .|+..+..
T Consensus         9 ~s~~~a~~A~~~GAdRiELc~~L--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~   84 (248)
T PRK11572          9 YSMECALTAQQAGADRIELCAAP--KEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE   84 (248)
T ss_pred             CCHHHHHHHHHcCCCEEEEccCc--CCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999986531  1112246777788877766  688776     34442 33       34555566


Q ss_pred             hCCCEEEEcH
Q psy16780        140 LGAKMVFVGR  149 (202)
Q Consensus       140 ~GAd~V~ig~  149 (202)
                      +|||+|.+|-
T Consensus        85 ~GadGvV~G~   94 (248)
T PRK11572         85 LGFPGLVTGV   94 (248)
T ss_pred             cCCCEEEEee
Confidence            8999999985

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=92.62  E-value=0.32  Score=42.95  Aligned_cols=72  Identities=22%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH-hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...+.||++|.|-.-.  .+.  ..+.+.|..+++. +  ++||+.-==|-++-++.++-.+|||+|.+=-+++
T Consensus       142 ~~iA~~Ye~~GA~aISVLTd~--~~F--~Gs~e~L~~vr~~~v--~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL  214 (338)
T PLN02460        142 VEIAQAYEKGGAACLSVLTDE--KYF--QGSFENLEAIRNAGV--KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVL  214 (338)
T ss_pred             HHHHHHHHhCCCcEEEEecCc--CcC--CCCHHHHHHHHHcCC--CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhC
Confidence            366788889999999985421  111  1246677788776 6  8999998889999999999999999997654443

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=92.60  E-value=1.2  Score=36.82  Aligned_cols=76  Identities=16%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             HHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH
Q psy16780         58 WLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA  137 (202)
Q Consensus        58 ~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka  137 (202)
                      .+.+..++|+++-.     ....+.+.|+|+|.++...           ..+.++++.+.. -.+|+..-.++..++.++
T Consensus        65 ~l~~~~gv~liINd-----~~dlA~~~~adGVHLg~~d-----------~~~~~~r~~~~~-~~iiG~s~~~s~~~a~~A  127 (221)
T PRK06512         65 PVIQEAGAAALIAG-----DSRIAGRVKADGLHIEGNL-----------AALAEAIEKHAP-KMIVGFGNLRDRHGAMEI  127 (221)
T ss_pred             HHHHHhCCEEEEeC-----HHHHHHHhCCCEEEECccc-----------cCHHHHHHhcCC-CCEEEecCCCCHHHHHHh
Confidence            33344578888742     2556677899999884321           013444444432 236665556788889898


Q ss_pred             HHhCCCEEEEcHH
Q psy16780        138 LALGAKMVFVGRP  150 (202)
Q Consensus       138 l~~GAd~V~ig~~  150 (202)
                      ...|||.+.+|.-
T Consensus       128 ~~~gaDYv~~Gpv  140 (221)
T PRK06512        128 GELRPDYLFFGKL  140 (221)
T ss_pred             hhcCCCEEEECCC
Confidence            8899999999964

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=92.45  E-value=0.28  Score=41.60  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=37.2

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.++.||.+... .++++++.+.++|+|+++++.
T Consensus       186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS  228 (256)
T TIGR00262       186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS  228 (256)
T ss_pred             HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence            677999999988999999865 579999999999999999854

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=92.43  E-value=0.32  Score=41.07  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=37.1

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.|+.+++..++||++-. +.+++++..+.+.|+|+|.+.+
T Consensus       163 ~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S  205 (248)
T cd04728         163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT  205 (248)
T ss_pred             CHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence            47789999998899999986 4799999999999999999855

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=92.34  E-value=0.72  Score=40.45  Aligned_cols=90  Identities=11%  Similarity=0.076  Sum_probs=62.0

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEec--cCHHHHH----HHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGI--LTAEDAK----IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a~----~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      +++..+.++.+|+.+  +.++.+...  .+.+++.    .+.+.|++.+.=   .     ..+.+++.+.++++..  .+
T Consensus       172 ~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq---P-----~~~~~~~~~~~l~~~~--~i  241 (357)
T cd03316         172 LREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE---P-----VPPDDLEGLARLRQAT--SV  241 (357)
T ss_pred             HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC---C-----CCccCHHHHHHHHHhC--CC
Confidence            355677899999886  567877653  4565553    344455555431   0     0112456677777765  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      ||+++..+++..|+.+++..| +|+|.+-
T Consensus       242 pi~~dE~~~~~~~~~~~i~~~~~d~v~~k  270 (357)
T cd03316         242 PIAAGENLYTRWEFRDLLEAGAVDIIQPD  270 (357)
T ss_pred             CEEeccccccHHHHHHHHHhCCCCEEecC
Confidence            999999999999999999876 7888764

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=92.34  E-value=1.4  Score=38.31  Aligned_cols=66  Identities=12%  Similarity=0.204  Sum_probs=45.1

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE---EEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV---YLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi---ia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++...++|||.|-+.+         +.+.+.+..+++.+  +.|+   +..||-.-...+.+.-++|.+.|..+...+++
T Consensus       171 a~aY~eAGAD~ifi~~---------~~~~~ei~~~~~~~--~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a  239 (294)
T TIGR02319       171 SREYVAAGADCIFLEA---------MLDVEEMKRVRDEI--DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA  239 (294)
T ss_pred             HHHHHHhCCCEEEecC---------CCCHHHHHHHHHhc--CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence            4566789999998843         34566677777777  3454   44454332245666667899999999887764

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=92.32  E-value=1.6  Score=33.19  Aligned_cols=85  Identities=20%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh----CCCcEEEEecC
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV----GHKVDVYLDGG  127 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----~~~ipiia~GG  127 (202)
                      ++++.+-+..+.-|+--+. .++ +.++.+.+.++|.|.+|+..++       +.+.++++.+.+    ..+++|++ ||
T Consensus        20 ~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~-------~~~~~~~~~~~L~~~g~~~i~viv-GG   91 (132)
T TIGR00640        20 KVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGG-------HLTLVPALRKELDKLGRPDILVVV-GG   91 (132)
T ss_pred             HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhh-------hHHHHHHHHHHHHhcCCCCCEEEE-eC
Confidence            3555555566777665444 344 5568899999999999875322       222233333222    22566666 66


Q ss_pred             CCCHHHHHHHHHhCCCEEE
Q psy16780        128 VRYGTDVFKALALGAKMVF  146 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~  146 (202)
                      ....+|..+..++|.|.+.
T Consensus        92 ~~~~~~~~~l~~~Gvd~~~  110 (132)
T TIGR00640        92 VIPPQDFDELKEMGVAEIF  110 (132)
T ss_pred             CCChHhHHHHHHCCCCEEE
Confidence            6667888888899987664

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=92.30  E-value=1.9  Score=36.71  Aligned_cols=92  Identities=21%  Similarity=0.263  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      ++.++++.+ ++.||.+|-.  .++++    ++.+...|-+-|++.-+|- .....  ..+...++.+++ .  ..|||.
T Consensus       106 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~-~--~~PVi~  180 (258)
T TIGR01362       106 TDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMRE-L--GCPVIF  180 (258)
T ss_pred             HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEE
Confidence            466777664 5899999954  56655    6778889999999987654 22211  235556666654 3  689998


Q ss_pred             e---------------cCCCCHHH--HHHHHHhCCCEEEEcH
Q psy16780        125 D---------------GGVRYGTD--VFKALALGAKMVFVGR  149 (202)
Q Consensus       125 ~---------------GGI~~~~D--~~kal~~GAd~V~ig~  149 (202)
                      +               ||-|...-  +..++++|||++++=.
T Consensus       181 DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv  222 (258)
T TIGR01362       181 DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET  222 (258)
T ss_pred             eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence            4               56555322  3347778999999865

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=92.29  E-value=1.5  Score=36.21  Aligned_cols=97  Identities=20%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             cccHHHHHHHHHhcCCCEEEEeccCH---HHHHHHHHcCCcEEEeeccCc--CCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGILTA---EDAKIGVEMGASAIMVSNHGG--RQLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~---~~a~~l~~aG~d~I~v~~~gg--~~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      +...+.++++++..++||+--.+...   .........-+|.+.+.....  +...+..-+|..+...    ....|++.
T Consensus        84 ~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~----~~~~~~~L  159 (208)
T COG0135          84 DEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL----RLSKPVML  159 (208)
T ss_pred             CCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc----cccCCEEE
Confidence            34567899999888899884344322   234445566789999987421  1112224467766654    22678999


Q ss_pred             ecCCCCHHHHHHHHHhCC-CEEEEcHHH
Q psy16780        125 DGGVRYGTDVFKALALGA-KMVFVGRPA  151 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GA-d~V~ig~~~  151 (202)
                      .||+ +++.+.++++++. .+|=+.|..
T Consensus       160 AGGL-~p~NV~~ai~~~~p~gvDvSSGV  186 (208)
T COG0135         160 AGGL-NPDNVAEAIALGPPYGVDVSSGV  186 (208)
T ss_pred             ECCC-CHHHHHHHHHhcCCceEEecccc
Confidence            9996 7899999999986 888887754

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=92.23  E-value=2.7  Score=36.32  Aligned_cols=92  Identities=17%  Similarity=0.166  Sum_probs=55.7

Q ss_pred             HHHHHHHh-c--CCCEEEEe----c-cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC---C
Q psy16780         55 DVTWLKTI-T--KLPIVLKG----I-LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH---K  119 (202)
Q Consensus        55 ~i~~i~~~-~--~~Pv~vK~----~-~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~---~  119 (202)
                      .|+..++. .  +++|+.+.    . ...    +-++...++|||+|-+-+        ...+.+.+.++.+.++.   +
T Consensus       140 kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--------~~~~~~ei~~~~~~~~~~~p~  211 (285)
T TIGR02320       140 KIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--------RKKDPDEILEFARRFRNHYPR  211 (285)
T ss_pred             HHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--------CCCCHHHHHHHHHHhhhhCCC
Confidence            44444443 2  46777762    1 122    335778899999999842        12345555666555542   5


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +|++...+-.....+.+.-++|++.|..+..++++
T Consensus       212 ~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a  246 (285)
T TIGR02320       212 TPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA  246 (285)
T ss_pred             CCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence            78877543212224556667899999999877764

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=92.19  E-value=1.7  Score=36.61  Aligned_cols=41  Identities=34%  Similarity=0.355  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCCEEE--Eec---cCH-HHHHHHHHcCCcEEEeeccCc
Q psy16780         55 DVTWLKTITKLPIVL--KGI---LTA-EDAKIGVEMGASAIMVSNHGG   96 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~v--K~~---~~~-~~a~~l~~aG~d~I~v~~~gg   96 (202)
                      +++++++... +|++  |..   .|. ..++.+.+.|+|+++++..+|
T Consensus        54 ~~~el~~~~~-~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G  100 (240)
T COG0284          54 ILEELKARGK-KVFLDLKLADIPNTVALAAKAAADLGADAVTVHAFGG  100 (240)
T ss_pred             HHHHHHHhCC-ceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCC
Confidence            7788877654 6664  433   232 335667889999999987765

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=92.18  E-value=1.9  Score=38.44  Aligned_cols=128  Identities=16%  Similarity=0.236  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCC----ccchHHHHHHHHHHhCCCcEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDY----VPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~----~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ++.++++.+ ++.||++|-.  .+.++    ++.+.+.|-+-|++.-.|-+.+.+    ...++..+..+++..  .+||
T Consensus       198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV  274 (352)
T PRK13396        198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI  274 (352)
T ss_pred             HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence            456666654 5899999965  36655    455667888778776554433321    234667778776655  6999


Q ss_pred             EEec----CCCC--HHHHHHHHHhCCCEEEEcHHHHHHh-hhcChHHH-HHHHHHHHHHHHHHHHHhCC
Q psy16780        123 YLDG----GVRY--GTDVFKALALGAKMVFVGRPALWGL-AHSGKSGV-RKVLDILINEFDQALALSGC  183 (202)
Q Consensus       123 ia~G----GI~~--~~D~~kal~~GAd~V~ig~~~l~~~-~~~G~~~v-~~~i~~l~~~L~~~m~~~G~  183 (202)
                      |++-    |.++  ..-...|+++|||++++=..+--.- .+.+...+ -+-++.+.++++.+-...|.
T Consensus       275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~  343 (352)
T PRK13396        275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR  343 (352)
T ss_pred             EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence            9852    4333  3344566778999998876443210 12222111 13345666667766666654

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=92.09  E-value=0.26  Score=41.26  Aligned_cols=41  Identities=27%  Similarity=0.419  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++++..++..+.|+++++- .+.+.|+.+.++|||.|+++|
T Consensus       171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn  212 (230)
T PF01884_consen  171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN  212 (230)
T ss_dssp             HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred             HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence            44666666667999999975 789999999999999999966

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional

Probab=92.06  E-value=2.5  Score=38.20  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC-----C--------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD-----Y--------VPASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~-----~--------~~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      ++++-+=.+++.+.+..+.++|++.|...  -||-.+     .        .-|....+.++.+.+   +.+..|++ ..
T Consensus       154 GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~-AS  230 (391)
T PRK12309        154 GIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMG-AS  230 (391)
T ss_pred             CCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEe-cc
Confidence            45555444567788889999999887753  233211     0        112334455554443   22455555 45


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGL  155 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~  155 (202)
                      +|+..++.+  .+|||.+-+.-.++..+
T Consensus       231 fRn~~~v~~--laG~d~~Ti~p~ll~~L  256 (391)
T PRK12309        231 FRNIGEIIE--LAGCDLLTISPKLLEQL  256 (391)
T ss_pred             cCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence            899999987  48999999998877654

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=92.03  E-value=6.1  Score=34.75  Aligned_cols=79  Identities=16%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             CHHHHHHHHH-cCCcEEEeeccCcCCCC-C------ccchHHHHHHHHHHhCCCcEEEEecCCCC---------------
Q psy16780         74 TAEDAKIGVE-MGASAIMVSNHGGRQLD-Y------VPASIEALPEIAKAVGHKVDVYLDGGVRY---------------  130 (202)
Q Consensus        74 ~~~~a~~l~~-aG~d~I~v~~~gg~~~~-~------~~~~~~~l~~i~~~~~~~ipiia~GGI~~---------------  130 (202)
                      +|++|+...+ .|+|.+-++.+.-...+ .      ..-+++.|.++++.+. ++|++.-||=..               
T Consensus       165 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~~  243 (321)
T PRK07084        165 QPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGKL  243 (321)
T ss_pred             CHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCcc
Confidence            5888888764 79999988753211111 1      1236678899988773 599999887532               


Q ss_pred             -------HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 -------GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 -------~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                             -+|+.+++.+|..=|-++|-+-.
T Consensus       244 ~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~  273 (321)
T PRK07084        244 KDAIGIPEEQLRKAAKSAVCKINIDSDGRL  273 (321)
T ss_pred             ccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence                   38899999999999999996554

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=91.99  E-value=2.1  Score=36.69  Aligned_cols=92  Identities=22%  Similarity=0.298  Sum_probs=58.2

Q ss_pred             HHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCcc---chHHHHHHHHHHhCCCcEEEE
Q psy16780         54 SDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVP---ASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~---~~~~~l~~i~~~~~~~ipiia  124 (202)
                      +.++++- ..+.||++|-.  .|.++    |+.....|-..|++.-+|=|..+...   -++..+..+++..  ..|||+
T Consensus       143 ~LLke~G-~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPViv  219 (286)
T COG2876         143 ALLKEVG-RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIV  219 (286)
T ss_pred             HHHHHhc-ccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEE
Confidence            3444433 24799999954  45443    67778889888998877666555432   2445666666654  799999


Q ss_pred             ec----CCCCHHH--HHHHHHhCCCEEEEc
Q psy16780        125 DG----GVRYGTD--VFKALALGAKMVFVG  148 (202)
Q Consensus       125 ~G----GI~~~~D--~~kal~~GAd~V~ig  148 (202)
                      +=    |=|+...  +..++++|||++|+-
T Consensus       220 DpSH~~Grr~lv~pla~AA~AaGAdglmiE  249 (286)
T COG2876         220 DPSHATGRRDLVEPLAKAAIAAGADGLMIE  249 (286)
T ss_pred             CCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence            42    3333222  224556899999974

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=91.96  E-value=2.2  Score=37.58  Aligned_cols=76  Identities=13%  Similarity=0.130  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      ++.+.+..+..+++++. .+++.+.+..+.+.|++.+.|....       ..++..|+.+++   ...|||.|-|..+.+
T Consensus        78 ~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~~-------~~n~pLL~~~A~---~gkPvilStGmatl~  146 (329)
T TIGR03569        78 HRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSGE-------ITNAPLLKKIAR---FGKPVILSTGMATLE  146 (329)
T ss_pred             HHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECccc-------ccCHHHHHHHHh---cCCcEEEECCCCCHH
Confidence            33555555566888774 5688999999999999999996532       235566676654   378999999999999


Q ss_pred             HHHHHHH
Q psy16780        133 DVFKALA  139 (202)
Q Consensus       133 D~~kal~  139 (202)
                      ++..++.
T Consensus       147 Ei~~Av~  153 (329)
T TIGR03569       147 EIEAAVG  153 (329)
T ss_pred             HHHHHHH
Confidence            9998886

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=91.95  E-value=0.28  Score=41.78  Aligned_cols=42  Identities=29%  Similarity=0.266  Sum_probs=35.1

Q ss_pred             ccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         51 INWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ...+.++.+|+.++.||.++. +.++++++.+. .|+|+++|+.
T Consensus       185 ~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS  227 (259)
T PF00290_consen  185 ELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS  227 (259)
T ss_dssp             HHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred             HHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence            356799999999999999995 58899999998 9999999965

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=91.81  E-value=2.7  Score=36.31  Aligned_cols=94  Identities=16%  Similarity=0.121  Sum_probs=52.4

Q ss_pred             HHHHHHHhcCCCEEEEec--cCH----HHHHHHHHcCCcEEEeecc--------CcCCCCCc-cchHHH---HHHHHHH-
Q psy16780         55 DVTWLKTITKLPIVLKGI--LTA----EDAKIGVEMGASAIMVSNH--------GGRQLDYV-PASIEA---LPEIAKA-  115 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~--~~~----~~a~~l~~aG~d~I~v~~~--------gg~~~~~~-~~~~~~---l~~i~~~-  115 (202)
                      .++.|...+++||++-.-  .++    +.++.+.++|+.+|.+--.        .|...... .+.-+.   ++.++++ 
T Consensus        69 ~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~  148 (285)
T TIGR02320        69 VVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQ  148 (285)
T ss_pred             HHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhc
Confidence            556666677999988642  233    4578899999999999321        11000001 122222   3333333 


Q ss_pred             hCCCcEEEEecCC----CCHHHHH----HHHHhCCCEEEEc
Q psy16780        116 VGHKVDVYLDGGV----RYGTDVF----KALALGAKMVFVG  148 (202)
Q Consensus       116 ~~~~ipiia~GGI----~~~~D~~----kal~~GAd~V~ig  148 (202)
                      ...+++|++--..    ...++++    .+.++|||+|++-
T Consensus       149 ~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~  189 (285)
T TIGR02320       149 TTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH  189 (285)
T ss_pred             cCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence            2346888885221    1234443    2334799999984

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=91.78  E-value=1.1  Score=38.79  Aligned_cols=82  Identities=21%  Similarity=0.288  Sum_probs=56.4

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC-----CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR-----QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGT  132 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~-----~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~  132 (202)
                      +.|+++=.+.+.-.|+.+.++|.+++-+++.+-.     ..|.+..+++    .++.+.+.+  ++||+++.  |..++.
T Consensus        16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~   93 (292)
T PRK11320         16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF   93 (292)
T ss_pred             CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence            5688777778999999999999999999875211     1133333333    234455545  79999954  667888


Q ss_pred             HHH----HHHHhCCCEEEE
Q psy16780        133 DVF----KALALGAKMVFV  147 (202)
Q Consensus       133 D~~----kal~~GAd~V~i  147 (202)
                      .+.    +...+||.++.|
T Consensus        94 ~v~r~V~~~~~aGaagi~I  112 (292)
T PRK11320         94 NIARTVKSMIKAGAAAVHI  112 (292)
T ss_pred             HHHHHHHHHHHcCCeEEEE
Confidence            863    444589988887

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=91.77  E-value=2.1  Score=36.52  Aligned_cols=92  Identities=22%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      ++.++++.+ ++.||.+|-.  .++++    ++.+...|-.-|++.-+|- .+...  ..+...++.+++ .  ..|||.
T Consensus       114 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~-~--~lPVi~  188 (264)
T PRK05198        114 TDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRE-T--GAPVIF  188 (264)
T ss_pred             HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhh-C--CCCEEE
Confidence            467777764 5899999954  56655    6777889999999887654 22211  234555666543 3  599998


Q ss_pred             e---------------cCCCCHH--HHHHHHHhCCCEEEEcH
Q psy16780        125 D---------------GGVRYGT--DVFKALALGAKMVFVGR  149 (202)
Q Consensus       125 ~---------------GGI~~~~--D~~kal~~GAd~V~ig~  149 (202)
                      +               ||-|+.-  =+..++++|||++++=.
T Consensus       189 DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv  230 (264)
T PRK05198        189 DATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET  230 (264)
T ss_pred             eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence            4               5555532  23366778999999864

>PRK00208 thiG thiazole synthase; Reviewed

Probab=91.65  E-value=0.44  Score=40.30  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=36.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++.+++..++||++-.. .+++++..+.+.|+|+|.+.+
T Consensus       163 ~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S  205 (250)
T PRK00208        163 NPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT  205 (250)
T ss_pred             CHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence            367899999988999999854 789999999999999999855

>KOG4175|consensus

Probab=91.64  E-value=4.4  Score=33.51  Aligned_cols=111  Identities=17%  Similarity=0.163  Sum_probs=70.6

Q ss_pred             HhhhccCccccHHHHHHHHHh-cCCCEEEEeccC-------HHHHHHHHHcCCcEEEeecc--------------Cc---
Q psy16780         42 YITSQLDETINWSDVTWLKTI-TKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNH--------------GG---   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~--------------gg---   96 (202)
                      .++..-..+..++.+++.|.+ +.+|+++=.-.+       ...++.+.++|+.++++-.-              .|   
T Consensus        72 aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gisl  151 (268)
T KOG4175|consen   72 ALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISL  151 (268)
T ss_pred             HHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceE
Confidence            355555666677888888877 789998754322       24467778899998776421              01   


Q ss_pred             -------CC---C-------C------------Cccch----HH-HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         97 -------RQ---L-------D------------YVPAS----IE-ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        97 -------~~---~-------~------------~~~~~----~~-~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                             +.   +       +            +...+    .. .+.++++.. ++.|+..-=||.+++++...-.. |
T Consensus       152 vpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-a  229 (268)
T KOG4175|consen  152 VPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-A  229 (268)
T ss_pred             EEeeCCCChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-c
Confidence                   00   0       0            11111    11 233444433 47888776699999999776555 9


Q ss_pred             CEEEEcHHHHHH
Q psy16780        143 KMVFVGRPALWG  154 (202)
Q Consensus       143 d~V~ig~~~l~~  154 (202)
                      |+|.+|+.++.-
T Consensus       230 DGVvvGSkiv~l  241 (268)
T KOG4175|consen  230 DGVVVGSKIVKL  241 (268)
T ss_pred             cceEecHHHHHH
Confidence            999999998864

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=91.48  E-value=3.6  Score=33.73  Aligned_cols=117  Identities=17%  Similarity=0.120  Sum_probs=0.0

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHc--CCcEEEeecc----CcCCCCCccchHHHH-HHHHHHhC
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEM--GASAIMVSNH----GGRQLDYVPASIEAL-PEIAKAVG  117 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~a--G~d~I~v~~~----gg~~~~~~~~~~~~l-~~i~~~~~  117 (202)
                      +.+-.-..+.++.+++..++|++-... .+.++...+.+.  .+|++.+...    ||+..   .-+|..+ ..+     
T Consensus        82 QLHg~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~---~~dw~~l~~~~-----  153 (210)
T PRK01222         82 QLHGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGK---TFDWSLLPAGL-----  153 (210)
T ss_pred             EECCCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCC---ccchHHhhhcc-----


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHHHhhhcChHHHHHHHHHHHH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                       ..|++..||| +++.+.+++.. +..+|=+.|.+=..-..+..+.+.++++.++.
T Consensus       154 -~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~  207 (210)
T PRK01222        154 -AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKS  207 (210)
T ss_pred             -CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECCCCCcCHHHHHHHHHHHHh

>PRK12346 transaldolase A; Provisional

Probab=91.44  E-value=3.1  Score=36.53  Aligned_cols=88  Identities=16%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      ++++-+-.+++.+.+..+.++|++.|...  -||-.++             +.+....+.++.+.+   +.+..|++ ..
T Consensus       149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~-AS  225 (316)
T PRK12346        149 GINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMG-AS  225 (316)
T ss_pred             CCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEe-cc
Confidence            55555555567788888889999887653  2322111             223344445544433   22444555 55


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +|+..++.  ..+|+|.+-+.-.++..+.
T Consensus       226 fRn~~qi~--alaG~d~lTi~p~ll~~L~  252 (316)
T PRK12346        226 FRRTEQIL--ALAGCDRLTISPNLLKELQ  252 (316)
T ss_pred             cCCHHHHH--HHhCCCEEeCCHHHHHHHH
Confidence            99999998  3469999999988887654

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=91.38  E-value=2.4  Score=35.64  Aligned_cols=82  Identities=27%  Similarity=0.281  Sum_probs=53.6

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc---C-CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCC-HH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG---R-QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRY-GT  132 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg---~-~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~-~~  132 (202)
                      +.|+++=.+.+.-.++.+.++|.+++-+++.+-   . ..|.+..+++    .++.+...+  ++||++++  |..+ +.
T Consensus         8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~   85 (238)
T PF13714_consen    8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE   85 (238)
T ss_dssp             SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred             CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence            478998888999999999999999999887421   1 1233333333    345566666  89999965  6666 44


Q ss_pred             HH----HHHHHhCCCEEEE
Q psy16780        133 DV----FKALALGAKMVFV  147 (202)
Q Consensus       133 D~----~kal~~GAd~V~i  147 (202)
                      ++    .+...+|+.++.|
T Consensus        86 ~v~~tv~~~~~aG~agi~I  104 (238)
T PF13714_consen   86 NVARTVRELERAGAAGINI  104 (238)
T ss_dssp             HHHHHHHHHHHCT-SEEEE
T ss_pred             HHHHHHHHHHHcCCcEEEe
Confidence            44    4455689998887

...

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=91.33  E-value=1.6  Score=36.66  Aligned_cols=83  Identities=16%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC----CCCccchHHH-H---HHHHHHhCCCcEEEEecCCC---CHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ----LDYVPASIEA-L---PEIAKAVGHKVDVYLDGGVR---YGT  132 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~----~~~~~~~~~~-l---~~i~~~~~~~ipiia~GGI~---~~~  132 (202)
                      +-|+.+=.+.+.-.|+.+.++|+|.|-+++..+..    .|....+++- +   +.+++.. ...||+++.--.   +++
T Consensus        11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~   89 (240)
T cd06556          11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT   89 (240)
T ss_pred             CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence            46777766788999999999999999998753311    1223334443 2   3333333 247999976333   335


Q ss_pred             HH----HHHHHhCCCEEEE
Q psy16780        133 DV----FKALALGAKMVFV  147 (202)
Q Consensus       133 D~----~kal~~GAd~V~i  147 (202)
                      ++    .+.+.+||++|-+
T Consensus        90 ~~~~~~~~l~~aGa~gv~i  108 (240)
T cd06556          90 AAFELAKTFMRAGAAGVKI  108 (240)
T ss_pred             HHHHHHHHHHHcCCcEEEE
Confidence            54    4566689999998

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>TIGR00874 talAB transaldolase

Probab=91.26  E-value=4.8  Score=35.34  Aligned_cols=88  Identities=17%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-----c--------cchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-----V--------PASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-----~--------~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      ++++-+=.+++.+.+..+.++|++.|...  -||-.++     +        .+....+.++.+.+   +.+.-|+ ...
T Consensus       148 GI~vN~TliFS~~Qa~aaa~AGa~~ISPF--VgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im-~AS  224 (317)
T TIGR00874       148 GIHCNLTLLFSFVQAIACAEAKVTLISPF--VGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVM-GAS  224 (317)
T ss_pred             CCceeeeeecCHHHHHHHHHcCCCEEEee--cchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEE-eec
Confidence            45555555567788888999999888753  2322110     1        23344445554433   2244444 456


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +|+..++.+  .+|||.+-+.-.++..+.
T Consensus       225 fRn~~qv~~--laG~d~~Ti~p~ll~~L~  251 (317)
T TIGR00874       225 FRNKEEILA--LAGCDRLTISPALLDELK  251 (317)
T ss_pred             cCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence            999999997  579999999988887653

This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.

>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family

Probab=91.25  E-value=6.3  Score=32.52  Aligned_cols=84  Identities=20%  Similarity=0.258  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      .++.++++++..+.||.+=.. .+    .+.++++.+.+-+ +.+-         .|.+.+.+..++......+++.++.
T Consensus        39 ~~~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~~~~-i~iK---------IP~T~~Gl~A~~~L~~~Gi~v~~T~  108 (213)
T TIGR00875        39 FWEVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKLAPN-IVVK---------IPMTSEGLKAVKILKKEGIKTNVTL  108 (213)
T ss_pred             HHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHhCCC-eEEE---------eCCCHHHHHHHHHHHHCCCceeEEE
Confidence            356888888877778876443 22    3557777776543 3331         1445555544433323368888876


Q ss_pred             CCCCHHHHHHHHHhCCCEEE
Q psy16780        127 GVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~  146 (202)
                       |.|..++..+..+||+.|.
T Consensus       109 -vfs~~Qa~~Aa~aGa~yis  127 (213)
T TIGR00875       109 -VFSAAQALLAAKAGATYVS  127 (213)
T ss_pred             -ecCHHHHHHHHHcCCCEEE
Confidence             9999999999999999764

This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.

>PRK05269 transaldolase B; Provisional

Probab=91.21  E-value=3.9  Score=35.90  Aligned_cols=88  Identities=20%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      ++++-+=.+++.+.+..+.++|++.|...-  ||-.++             +.+....+.++.+.+   +.+..|++. .
T Consensus       150 GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~A-S  226 (318)
T PRK05269        150 GINCNLTLLFSFAQARACAEAGVFLISPFV--GRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGA-S  226 (318)
T ss_pred             CCceeEeEecCHHHHHHHHHcCCCEEEeec--cHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEee-c
Confidence            344444444567778888888988776532  221111             223444455554433   235566664 6


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +|+..++..  ..|+|.+-+.-.++..+.
T Consensus       227 frn~~~v~~--laG~d~vTi~p~ll~~l~  253 (318)
T PRK05269        227 FRNTGQILE--LAGCDRLTISPALLEELA  253 (318)
T ss_pred             cCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence            999999997  569999999988887654

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=90.80  E-value=0.55  Score=43.17  Aligned_cols=65  Identities=17%  Similarity=0.053  Sum_probs=43.4

Q ss_pred             ccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780         72 ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        72 ~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +.++++++.+.. |+|++-|+.+    +-..+.....+.++   +...+.|+   |+++.+|+..+..+|||++++
T Consensus       219 I~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L---~~~~vKIC---Git~~eda~~a~~~GaD~lGf  283 (454)
T PRK09427        219 IYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKL---ILGENKVC---GLTRPQDAKAAYDAGAVYGGL  283 (454)
T ss_pred             CCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHH---hccccccC---CCCCHHHHHHHHhCCCCEEee
Confidence            378999998865 7999988432    11111122334443   22234443   699999999999999999987

>TIGR02317 prpB methylisocitrate lyase

Probab=90.78  E-value=2.3  Score=36.76  Aligned_cols=82  Identities=18%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGTD  133 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~D  133 (202)
                      +-|+++=.+.+.-.|+.+.++|.+++-+++.+-.    ..|.+..+.+    .+..+.+.+  ++||+++.  |..++.+
T Consensus        12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~   89 (285)
T TIGR02317        12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN   89 (285)
T ss_pred             CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence            4588877778999999999999999999875311    1132322332    334455555  79999954  7777777


Q ss_pred             H----HHHHHhCCCEEEE
Q psy16780        134 V----FKALALGAKMVFV  147 (202)
Q Consensus       134 ~----~kal~~GAd~V~i  147 (202)
                      +    .+...+||.++.|
T Consensus        90 v~~tv~~~~~aG~agi~I  107 (285)
T TIGR02317        90 VARTVREMEDAGAAAVHI  107 (285)
T ss_pred             HHHHHHHHHHcCCeEEEE
Confidence            5    3444589988877

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=90.75  E-value=3.3  Score=36.41  Aligned_cols=99  Identities=14%  Similarity=0.014  Sum_probs=59.1

Q ss_pred             CccccHHHHHHHHH-hcCCCEEEEec------cCHHHHH-HHHHcCCcEEEeeccCcCC--CCCccchH----HHHHHHH
Q psy16780         48 DETINWSDVTWLKT-ITKLPIVLKGI------LTAEDAK-IGVEMGASAIMVSNHGGRQ--LDYVPASI----EALPEIA  113 (202)
Q Consensus        48 d~~~~~~~i~~i~~-~~~~Pv~vK~~------~~~~~a~-~l~~aG~d~I~v~~~gg~~--~~~~~~~~----~~l~~i~  113 (202)
                      +|+. ++..+.+|+ ..++|++.-+.      ...+.++ .....++|++.++-.....  ...+..++    +.+..++
T Consensus        97 ~~~~-~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~  175 (333)
T TIGR02151        97 DPET-ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEIC  175 (333)
T ss_pred             Chhh-HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHH
Confidence            4553 333466676 46899986542      1133343 3445678888874321111  11122233    4566677


Q ss_pred             HHhCCCcEEEE--ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        114 KAVGHKVDVYL--DGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       114 ~~~~~~ipiia--~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.+  ++||+.  +|.-.+.+++..+..+|+|+|-++.
T Consensus       176 ~~~--~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg  211 (333)
T TIGR02151       176 SQL--SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG  211 (333)
T ss_pred             Hhc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence            766  799988  4544677777777789999999865

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=90.69  E-value=0.48  Score=40.48  Aligned_cols=41  Identities=22%  Similarity=0.252  Sum_probs=36.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.+++|+.++. +.+++.++.+.+. +|+|+|+.
T Consensus       193 ~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGS  234 (265)
T COG0159         193 VKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGS  234 (265)
T ss_pred             HHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcH
Confidence            57799999999999999995 5889999999999 99999954

>TIGR03586 PseI pseudaminic acid synthase

Probab=90.64  E-value=9  Score=33.75  Aligned_cols=127  Identities=18%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cCHHHH----HHHHHcCCc-EEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LTAEDA----KIGVEMGAS-AIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~~~~a----~~l~~aG~d-~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      +..++.+.+ .+.||++|.. .+.+++    ..+.+.|.. .+.+.......-.....++..+..+++.+  .+||..|+
T Consensus       124 ~~LL~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SD  200 (327)
T TIGR03586       124 LPLIRYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSD  200 (327)
T ss_pred             HHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeC
Confidence            667777775 4899999965 455554    344568874 44443221111011123455667776666  68996765


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHH----HHHHHHHHHHHHHHHHHhCCC
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGV----RKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v----~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      --..-.-...|+++||+.+  =+.|-..-...|++.-    -+-++.|.+.++..-..+|..
T Consensus       201 Ht~G~~~~~aAva~GA~iI--EkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~  260 (327)
T TIGR03586       201 HTLGILAPVAAVALGACVI--EKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV  260 (327)
T ss_pred             CCCchHHHHHHHHcCCCEE--EeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            3222233445667899843  3333221112232110    133556777777777777753

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)

Probab=90.56  E-value=2.8  Score=35.29  Aligned_cols=76  Identities=16%  Similarity=0.131  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      |..+.+..+..++..+. -+.+.+.+..+.+.|++++.|...-       ..++..|+.+++   ...|||.|-|..+-+
T Consensus        58 ~~~L~~~~~~~gi~f~s-tpfd~~s~d~l~~~~~~~~KIaS~d-------l~n~~lL~~~A~---tgkPvIlSTG~stl~  126 (241)
T PF03102_consen   58 HKELFEYCKELGIDFFS-TPFDEESVDFLEELGVPAYKIASGD-------LTNLPLLEYIAK---TGKPVILSTGMSTLE  126 (241)
T ss_dssp             HHHHHHHHHHTT-EEEE-EE-SHHHHHHHHHHT-SEEEE-GGG-------TT-HHHHHHHHT---T-S-EEEE-TT--HH
T ss_pred             HHHHHHHHHHcCCEEEE-CCCCHHHHHHHHHcCCCEEEecccc-------ccCHHHHHHHHH---hCCcEEEECCCCCHH
Confidence            33344444445666554 4578999999999999999996531       234555666543   479999999999999


Q ss_pred             HHHHHHH
Q psy16780        133 DVFKALA  139 (202)
Q Consensus       133 D~~kal~  139 (202)
                      ++.+++.
T Consensus       127 EI~~Av~  133 (241)
T PF03102_consen  127 EIERAVE  133 (241)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988876

It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=90.43  E-value=2.7  Score=36.91  Aligned_cols=88  Identities=10%  Similarity=0.074  Sum_probs=62.6

Q ss_pred             hccCccccHHHHHHHHHh-cCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTI-TKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      ....|+...+.|+++++. ++.|+.|.+..      ..+..+.+.+.+++.|++++  |      .|. . +..+++ . 
T Consensus        35 ~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~--G------~P~-~-~~~lk~-~-  102 (320)
T cd04743          35 ALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG--G------RPD-Q-ARALEA-I-  102 (320)
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcC--C------ChH-H-HHHHHH-C-
Confidence            344667777889999985 68999988752      24667788899999988753  2      122 1 344432 2 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                       .+.++.  -+.|..++.++..+|||+|.+
T Consensus       103 -Gi~v~~--~v~s~~~A~~a~~~GaD~vVa  129 (320)
T cd04743         103 -GISTYL--HVPSPGLLKQFLENGARKFIF  129 (320)
T ss_pred             -CCEEEE--EeCCHHHHHHHHHcCCCEEEE
Confidence             566764  467999999999999998875

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=90.33  E-value=0.84  Score=38.87  Aligned_cols=73  Identities=25%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCC--CcEEEEecCCC-CHH-HHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGH--KVDVYLDGGVR-YGT-DVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~--~ipiia~GGI~-~~~-D~~kal~~GAd~V~ig  148 (202)
                      .++++.+.+.|+|+|.+.|.+....  +-++.+..++..+...++.  .+| ++.-=++ ++. -+.-|.+.||++|-+-
T Consensus        31 ~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p-~GvnvL~nd~~aal~iA~a~ga~FIRv~  109 (257)
T TIGR00259        31 WKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP-LGINVLRNDAVAALAIAMAVGAKFIRVN  109 (257)
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC-eeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence            4678899999999999999876443  3344455554444333322  345 2222233 222 2333445799998773

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>KOG3111|consensus

Probab=90.27  E-value=3.6  Score=33.75  Aligned_cols=114  Identities=22%  Similarity=0.310  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeec----cCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         53 WSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSN----HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~----~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .+++++||+.- .+-+.+|--...+.+....+ -+|.+-|-.    .||..+  -..-..-++.+++.+ ++..|=.+||
T Consensus       102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQkF--me~mm~KV~~lR~ky-p~l~ievDGG  177 (224)
T KOG3111|consen  102 AELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQKF--MEDMMPKVEWLREKY-PNLDIEVDGG  177 (224)
T ss_pred             HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchhhh--HHHHHHHHHHHHHhC-CCceEEecCC
Confidence            45788888752 22334443355677666554 466665432    222211  011122234444443 3566669999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA  177 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~  177 (202)
                      +. ++.+-++.++||+++..|++.+.+      ..-.++|+.++++.+..
T Consensus       178 v~-~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a  220 (224)
T KOG3111|consen  178 VG-PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA  220 (224)
T ss_pred             cC-cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence            74 578889999999999999998753      22346677777766544

>smart00052 EAL Putative diguanylate phosphodiesterase

Probab=90.24  E-value=2.6  Score=33.92  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCc---cchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYV---PASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      +.++.+++ .++.+.+-.. ........+....+|+|.++.+--+.....   ......+..+++..  .++||+. ||-
T Consensus       137 ~~i~~l~~-~G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~-gVe  212 (241)
T smart00052      137 ATLQRLRE-LGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKL--GLQVVAE-GVE  212 (241)
T ss_pred             HHHHHHHH-CCCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHC--CCeEEEe-cCC
Confidence            34455543 2556655443 234445566666677777654211111111   11233344444444  6889997 599


Q ss_pred             CHHHHHHHHHhCCCEEE
Q psy16780        130 YGTDVFKALALGAKMVF  146 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~  146 (202)
                      +.++...+..+|++.++
T Consensus       213 ~~~~~~~l~~~Gi~~~Q  229 (241)
T smart00052      213 TPEQLDLLRSLGCDYGQ  229 (241)
T ss_pred             CHHHHHHHHHcCCCEEe
Confidence            99999999999999876

Putative diguanylate phosphodiesterase, present in a variety of bacteria.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=90.21  E-value=2.4  Score=35.97  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=52.1

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C-CCCccchHHH-H---HHHHHHhCCCcE-EEEecC---CCC-
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q-LDYVPASIEA-L---PEIAKAVGHKVD-VYLDGG---VRY-  130 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~-~~~~~~~~~~-l---~~i~~~~~~~ip-iia~GG---I~~-  130 (202)
                      +-|+.+=...+.-.|+.+.++|+|.+-++...+.   . .|.+..+.+- +   +.+++..  +.| |+++-+   ..+ 
T Consensus        11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~   88 (254)
T cd06557          11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS   88 (254)
T ss_pred             CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence            5677776678899999999999999975322111   1 1333444443 3   3333333  577 777654   434 


Q ss_pred             HHH----HHHHHH-hCCCEEEE
Q psy16780        131 GTD----VFKALA-LGAKMVFV  147 (202)
Q Consensus       131 ~~D----~~kal~-~GAd~V~i  147 (202)
                      +++    +.+.+. +||++|-+
T Consensus        89 ~~~av~~a~r~~~~aGa~aVki  110 (254)
T cd06557          89 PEQALRNAARLMKEAGADAVKL  110 (254)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEE
Confidence            444    467777 99999999

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>TIGR03586 PseI pseudaminic acid synthase

Probab=90.19  E-value=3.6  Score=36.27  Aligned_cols=82  Identities=11%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV  134 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~  134 (202)
                      .+.+..+..+++++. .+++.+.+..+.+.|++++.+..+.       ..++..|..+++   ...|||.+-|..+.+++
T Consensus        81 ~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~~-------~~n~~LL~~va~---~gkPvilstG~~t~~Ei  149 (327)
T TIGR03586        81 ELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASFE-------ITDLPLIRYVAK---TGKPIIMSTGIATLEEI  149 (327)
T ss_pred             HHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCcc-------ccCHHHHHHHHh---cCCcEEEECCCCCHHHH
Confidence            344556667888875 5688899999999999999995532       235566676654   27899999999999999


Q ss_pred             HHHHH----hCCCEEEE
Q psy16780        135 FKALA----LGAKMVFV  147 (202)
Q Consensus       135 ~kal~----~GAd~V~i  147 (202)
                      ..++.    .|..-|.+
T Consensus       150 ~~Av~~i~~~g~~~i~L  166 (327)
T TIGR03586       150 QEAVEACREAGCKDLVL  166 (327)
T ss_pred             HHHHHHHHHCCCCcEEE
Confidence            88875    47643444

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=89.94  E-value=1.3  Score=39.37  Aligned_cols=64  Identities=23%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +.++++++.++|++.|.++-..       .....++.++++..  .+|++++-- ++..-+.+++..|+|.+=+
T Consensus        44 tv~Qi~~L~~aGceiVRvav~~-------~~~a~al~~I~~~~--~iPlvADIH-Fd~~lAl~a~~~G~~~iRI  107 (360)
T PRK00366         44 TVAQIKRLARAGCEIVRVAVPD-------MEAAAALPEIKKQL--PVPLVADIH-FDYRLALAAAEAGADALRI  107 (360)
T ss_pred             HHHHHHHHHHcCCCEEEEccCC-------HHHHHhHHHHHHcC--CCCEEEecC-CCHHHHHHHHHhCCCEEEE
Confidence            3567889999999999985421       23556788888877  799999875 6788889999999999854

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=89.56  E-value=3.5  Score=33.91  Aligned_cols=95  Identities=16%  Similarity=0.227  Sum_probs=55.2

Q ss_pred             HHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHc-CCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEM-GASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~a-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      +.++++++..+.||.+=.. .+    .+.++.+.+. |--.|.+           |.+...+..++......+++-+ +.
T Consensus        41 ~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI-----------P~T~~gl~ai~~L~~~gi~v~~-T~  108 (211)
T cd00956          41 AVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI-----------PVTEDGLKAIKKLSEEGIKTNV-TA  108 (211)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE-----------cCcHhHHHHHHHHHHcCCceee-EE
Confidence            4778888877778876443 23    3556677665 3222222           2233334333322222576555 56


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGV  163 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v  163 (202)
                      |.|..++..+..+||+.|.   |++-.+...|.+++
T Consensus       109 V~s~~Qa~~Aa~AGA~yvs---P~vgR~~~~g~dg~  141 (211)
T cd00956         109 IFSAAQALLAAKAGATYVS---PFVGRIDDLGGDGM  141 (211)
T ss_pred             ecCHHHHHHHHHcCCCEEE---EecChHhhcCCCHH
Confidence            9999999999999999854   44433333344443

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=89.54  E-value=6.4  Score=32.44  Aligned_cols=96  Identities=13%  Similarity=0.010  Sum_probs=56.4

Q ss_pred             CccccH--HHHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         48 DETINW--SDVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        48 d~~~~~--~~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .|+..+  +.++++++.++.|+-+-+. .++ +.+..+.++|+|+|+++.  +.  +........++.+++.   ..-+-
T Consensus        47 ~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~--~q--~~~d~~~~~~~~i~~~---g~~iG  119 (229)
T PLN02334         47 VPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHI--EQ--ASTIHLHRLIQQIKSA---GMKAG  119 (229)
T ss_pred             CCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEee--cc--ccchhHHHHHHHHHHC---CCeEE
Confidence            455554  8999999988888665544 333 557788999999998843  31  0001122344444332   23222


Q ss_pred             EecCCCCHHHHHHHHHhC--CCEEEEcHH
Q psy16780        124 LDGGVRYGTDVFKALALG--AKMVFVGRP  150 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~G--Ad~V~ig~~  150 (202)
                      .+-.-.|+.+..+.+..+  +|.++++.-
T Consensus       120 ls~~~~t~~~~~~~~~~~~~~Dyi~~~~v  148 (229)
T PLN02334        120 VVLNPGTPVEAVEPVVEKGLVDMVLVMSV  148 (229)
T ss_pred             EEECCCCCHHHHHHHHhccCCCEEEEEEE
Confidence            222233566666666544  999988753

>TIGR02317 prpB methylisocitrate lyase

Probab=89.50  E-value=2.8  Score=36.19  Aligned_cols=66  Identities=32%  Similarity=0.243  Sum_probs=44.5

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE---EecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY---LDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii---a~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++...++|||.|-+-+         +.+.+.+..+.+.+  +.|++   ..+|-.-..++.+.-++|.+.|..|...+++
T Consensus       167 a~ay~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a  235 (285)
T TIGR02317       167 AKAYVEAGADMIFPEA---------LTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA  235 (285)
T ss_pred             HHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence            4567889999998843         33556677777777  46773   3344211234666667899999999877764

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=89.49  E-value=1.8  Score=33.39  Aligned_cols=74  Identities=24%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHH-----HHHHhCCCEEEEcH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF-----KALALGAKMVFVGR  149 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~-----kal~~GAd~V~ig~  149 (202)
                      .+.++.+.+.|++.+.+.................+..+.+..  ++|+++.....+..+..     .+..+|+|.|.+.-
T Consensus        15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~   92 (200)
T cd04722          15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG   92 (200)
T ss_pred             HHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence            577888999999999886543221111111112344444444  78999988887777754     56678999998875


Q ss_pred             H
Q psy16780        150 P  150 (202)
Q Consensus       150 ~  150 (202)
                      .
T Consensus        93 ~   93 (200)
T cd04722          93 A   93 (200)
T ss_pred             c
Confidence            3

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=89.41  E-value=4.5  Score=34.96  Aligned_cols=92  Identities=21%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      .+.++++. .++.||.+|-.  .++++    ++.+...|-+-|.+.-+|- .....  ..+...++.+++ .  ..|||.
T Consensus       120 tdLL~a~~-~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~-tFgy~~lv~D~r~ip~mk~-~--~lPVI~  194 (290)
T PLN03033        120 TDLLVAAA-KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-A--NCPVVA  194 (290)
T ss_pred             HHHHHHHH-ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEE
Confidence            44555555 35899999954  56655    6778889999999987653 22111  235556666543 3  689998


Q ss_pred             e--------------------cCCCCHH--HHHHHHHhCCCEEEEcH
Q psy16780        125 D--------------------GGVRYGT--DVFKALALGAKMVFVGR  149 (202)
Q Consensus       125 ~--------------------GGI~~~~--D~~kal~~GAd~V~ig~  149 (202)
                      +                    ||-|..-  =+..|+++|||++++=.
T Consensus       195 DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv  241 (290)
T PLN03033        195 DITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV  241 (290)
T ss_pred             eCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence            3                    4444422  23456678999999865

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=89.39  E-value=6.9  Score=33.43  Aligned_cols=90  Identities=20%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C-CCCccchHHH-H---HHHHHHhCCCc-EEEEe
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q-LDYVPASIEA-L---PEIAKAVGHKV-DVYLD  125 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~-~~~~~~~~~~-l---~~i~~~~~~~i-piia~  125 (202)
                      .++++++. +-|+.+=...+.-.|+.+.++|+|.|-++...+.   . .|....+.+- +   +.+++..  +. +|+++
T Consensus         6 ~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vvaD   82 (264)
T PRK00311          6 DLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVVAD   82 (264)
T ss_pred             HHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEEEe
Confidence            34444432 4688776678899999999999999976422110   1 1333444443 2   3333333  44 58886


Q ss_pred             cCCC----CHHH----HHHHHH-hCCCEEEE
Q psy16780        126 GGVR----YGTD----VFKALA-LGAKMVFV  147 (202)
Q Consensus       126 GGI~----~~~D----~~kal~-~GAd~V~i  147 (202)
                      -+..    +.++    +.+.+. +||++|-+
T Consensus        83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVki  113 (264)
T PRK00311         83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKL  113 (264)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence            6543    4466    466777 89999998

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=89.35  E-value=2.5  Score=33.67  Aligned_cols=80  Identities=14%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             HHHHHHH---HhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         54 SDVTWLK---TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        54 ~~i~~i~---~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      +.+++++   +..+.|+++-.     ..+.+.+.|+|+|.+....        .+.   ..+++.+....  +....+++
T Consensus        44 ~~~~~l~~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~~--------~~~---~~~r~~~~~~~--~ig~s~h~  105 (196)
T TIGR00693        44 ALAEKLQELCRRYGVPFIVND-----RVDLALALGADGVHLGQDD--------LPA---SEARALLGPDK--IIGVSTHN  105 (196)
T ss_pred             HHHHHHHHHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCccc--------CCH---HHHHHhcCCCC--EEEEeCCC
Confidence            3444444   34578888742     4567788999999884310        111   22233332222  33455899


Q ss_pred             HHHHHHHHHhCCCEEEEcHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~  151 (202)
                      .+++.++..+|||.+.+|.-|
T Consensus       106 ~~e~~~a~~~g~dyi~~~~v~  126 (196)
T TIGR00693       106 LEELAEAEAEGADYIGFGPIF  126 (196)
T ss_pred             HHHHHHHhHcCCCEEEECCcc
Confidence            999999999999999998543

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=89.32  E-value=6.1  Score=31.49  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=53.9

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      +..+.++++++.++.|+.+.+.  ...+.++.+.++|+|+++++.  +..    ....+.++.+++ .  .+.+..+=+-
T Consensus        44 ~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~--~~~----~~~~~~~~~~~~-~--~~~~g~~~~~  114 (211)
T cd00429          44 FGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHA--EAT----DHLHRTIQLIKE-L--GMKAGVALNP  114 (211)
T ss_pred             cCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECc--cch----hhHHHHHHHHHH-C--CCeEEEEecC
Confidence            3457899999876666654433  224568888899999999854  211    111223333322 2  4444444344


Q ss_pred             CCHHHHHHHHHhCCCEEEEcH
Q psy16780        129 RYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+..+..+.+..++|.+.+++
T Consensus       115 ~~~~~~~~~~~~~~d~i~~~~  135 (211)
T cd00429         115 GTPVEVLEPYLDEVDLVLVMS  135 (211)
T ss_pred             CCCHHHHHHHHhhCCEEEEEE
Confidence            455666677776799998765

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=89.27  E-value=5.9  Score=35.80  Aligned_cols=88  Identities=20%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             HHHHHHHHHh-cCCCEEE--EeccCHHH-HHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEE-ec
Q psy16780         53 WSDVTWLKTI-TKLPIVL--KGILTAED-AKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYL-DG  126 (202)
Q Consensus        53 ~~~i~~i~~~-~~~Pv~v--K~~~~~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia-~G  126 (202)
                      .+.++++++. .+.||.+  |..-.++. ++.+.++|+|.+++++.++      ..+.. ++..+++ .  .+-+.. .=
T Consensus       214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------~~ti~~ai~~akk-~--GikvgVD~l  284 (391)
T PRK13307        214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------ISTIEKAIHEAQK-T--GIYSILDML  284 (391)
T ss_pred             HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------HHHHHHHHHHHHH-c--CCEEEEEEc
Confidence            4678999987 4677764  33333444 7889999999999976432      12233 2333332 3  234444 45


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +..++.+.++.+..+.|.|.+.+
T Consensus       285 np~tp~e~i~~l~~~vD~Vllht  307 (391)
T PRK13307        285 NVEDPVKLLESLKVKPDVVELHR  307 (391)
T ss_pred             CCCCHHHHHHHhhCCCCEEEEcc
Confidence            56788888888888999998886

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=89.06  E-value=0.81  Score=41.13  Aligned_cols=42  Identities=21%  Similarity=0.178  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +|+.+..+++..  ++|||. .||.+.+|+.+++.+|+|+|.++.
T Consensus       233 tW~di~~lr~~~--~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs~  274 (381)
T PRK11197        233 SWKDLEWIRDFW--DGPMVI-KGILDPEDARDAVRFGADGIVVSN  274 (381)
T ss_pred             CHHHHHHHHHhC--CCCEEE-EecCCHHHHHHHHhCCCCEEEECC
Confidence            455577777766  789888 669999999999999999998763

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=88.93  E-value=8  Score=34.44  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=57.5

Q ss_pred             cCHHHHHHHH-HcCC----cEEEeeccCcCCCCC-ccc--hHHHHHHHHHHhC-------CCcEEEEecCCCCH-HHHHH
Q psy16780         73 LTAEDAKIGV-EMGA----SAIMVSNHGGRQLDY-VPA--SIEALPEIAKAVG-------HKVDVYLDGGVRYG-TDVFK  136 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~----d~I~v~~~gg~~~~~-~~~--~~~~l~~i~~~~~-------~~ipiia~GGI~~~-~D~~k  136 (202)
                      .+|++|+... +.|+    |.+-++.+.-...+. +.|  +++.|.++++.+.       +++|++.-||=..+ +++.+
T Consensus       188 TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~  267 (350)
T PRK09197        188 TQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIRE  267 (350)
T ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHH
Confidence            4678887776 5687    888876532222222 233  5667888877762       26999999987665 77888


Q ss_pred             HHHhCCCEEEEcHHHHH
Q psy16780        137 ALALGAKMVFVGRPALW  153 (202)
Q Consensus       137 al~~GAd~V~ig~~~l~  153 (202)
                      ++..|..=|-++|.+-.
T Consensus       268 ai~~GI~KINi~T~l~~  284 (350)
T PRK09197        268 AVSYGVVKMNIDTDTQW  284 (350)
T ss_pred             HHHCCCeeEEeCcHHHH
Confidence            99999999999997654

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=88.88  E-value=4.3  Score=34.05  Aligned_cols=65  Identities=29%  Similarity=0.275  Sum_probs=46.9

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++...++|||.|-+-+         +.+.+.+.++.+.+  +.|+...-+ ....++.+.-.+|.+.|.++..++++
T Consensus       161 ~~aY~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~a  225 (238)
T PF13714_consen  161 AKAYAEAGADMIFIPG---------LQSEEEIERIVKAV--DGPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLRA  225 (238)
T ss_dssp             HHHHHHTT-SEEEETT---------SSSHHHHHHHHHHH--SSEEEEETT-SSSS-HHHHHHTTESEEEETSHHHHH
T ss_pred             HHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHHH
Confidence            4567899999998843         23455678888888  688877664 32366777778999999999988764

...

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=88.88  E-value=2.3  Score=36.88  Aligned_cols=82  Identities=22%  Similarity=0.186  Sum_probs=56.0

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----C-CCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----Q-LDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGT  132 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~-~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~  132 (202)
                      +-|+++-.+.+.-.|+.+.++|.+++-+++.+..    . .|.+..+++    .+..+...+  ++||+++.  |..+..
T Consensus        15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~   92 (294)
T TIGR02319        15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM   92 (294)
T ss_pred             CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence            5688877788999999999999999998764221    1 233333333    234455555  79999964  666666


Q ss_pred             HH----HHHHHhCCCEEEE
Q psy16780        133 DV----FKALALGAKMVFV  147 (202)
Q Consensus       133 D~----~kal~~GAd~V~i  147 (202)
                      ++    .+...+||.++.|
T Consensus        93 ~v~r~V~~~~~aGaagi~I  111 (294)
T TIGR02319        93 SVWRATREFERVGIVGYHL  111 (294)
T ss_pred             HHHHHHHHHHHcCCeEEEE
Confidence            65    4455689988877

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins

Probab=88.75  E-value=1.8  Score=34.87  Aligned_cols=88  Identities=16%  Similarity=0.203  Sum_probs=54.6

Q ss_pred             HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccc---hHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPA---SIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      +.++.+++ .++.+.+... ........+....+|+|.++..--+... ...   .+..+..+++..  .+.+|+.| |.
T Consensus       138 ~~l~~l~~-~G~~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~--~~~via~g-Ve  212 (236)
T PF00563_consen  138 ENLRRLRS-LGFRIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL--GIKVIAEG-VE  212 (236)
T ss_dssp             HHHHHHHH-CT-EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT--T-EEEEEC-E-
T ss_pred             HHHHHHHh-cCceeEeeeccCCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc--ccccceee-cC
Confidence            45666554 5777777755 3334555677778888888764222222 222   223344444444  78899865 99


Q ss_pred             CHHHHHHHHHhCCCEEE
Q psy16780        130 YGTDVFKALALGAKMVF  146 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~  146 (202)
                      +.++...+..+|++.++
T Consensus       213 ~~~~~~~l~~~G~~~~Q  229 (236)
T PF00563_consen  213 SEEQLELLKELGVDYIQ  229 (236)
T ss_dssp             SHHHHHHHHHTTESEEE
T ss_pred             CHHHHHHHHHcCCCEEE
Confidence            99999999999999876

It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=88.74  E-value=3.5  Score=35.73  Aligned_cols=66  Identities=26%  Similarity=0.218  Sum_probs=44.0

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE---ecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL---DGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia---~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++...++|||.|-+.+         +.+.+.+.++.+.+  +.|+++   ++|-.-..++.+.-++|.+.|..|...++.
T Consensus       172 a~aY~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a  240 (292)
T PRK11320        172 AQAYVEAGADMIFPEA---------MTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA  240 (292)
T ss_pred             HHHHHHcCCCEEEecC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence            4567889999998843         33566777777777  567733   344221124555667899999999877654

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=88.66  E-value=1  Score=38.22  Aligned_cols=45  Identities=27%  Similarity=0.189  Sum_probs=37.3

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .+....+.++++|+.++.||++..- .++++++.+.+. +|+++|+.
T Consensus       184 ~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS  229 (258)
T PRK13111        184 DAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS  229 (258)
T ss_pred             CCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence            3444567999999999999999854 689999999975 99999965

>PLN02858 fructose-bisphosphate aldolase

Probab=88.65  E-value=13  Score=38.87  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=73.6

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCc-c--chHHHHHHHHHHhC-CCcEEEEecCCCC-HHHHHHHHHhCCCEEEE
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYV-P--ASIEALPEIAKAVG-HKVDVYLDGGVRY-GTDVFKALALGAKMVFV  147 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~-~--~~~~~l~~i~~~~~-~~ipiia~GGI~~-~~D~~kal~~GAd~V~i  147 (202)
                      ++++++... +.|+|.+-++-+.-...+.+ .  -+++.|.++++.+. .++|++.-||=.. -+++.|++..|..=|-+
T Consensus      1251 ~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi 1330 (1378)
T PLN02858       1251 DVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNV 1330 (1378)
T ss_pred             CHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence            578887776 57999998864221122211 2  36678899988873 3599999885433 57788999999999999


Q ss_pred             cHHHHHH----hhhcC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        148 GRPALWG----LAHSG----KSGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       148 g~~~l~~----~~~~G----~~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      ++.+-.+    +...+    ..-.....+.+++-.+..|..+|..
T Consensus      1331 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858       1331 NTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred             CHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9976543    21111    1223444566777778888888754

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=88.53  E-value=1  Score=40.17  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +|+.+..+++..  +.|+|.- ||.+.+|+.+++.+|+|+|.++
T Consensus       224 ~w~~i~~ir~~~--~~pviiK-gV~~~eda~~a~~~G~d~I~VS  264 (361)
T cd04736         224 NWQDLRWLRDLW--PHKLLVK-GIVTAEDAKRCIELGADGVILS  264 (361)
T ss_pred             CHHHHHHHHHhC--CCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence            455667777666  6788887 4999999999999999999875

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=88.32  E-value=0.97  Score=37.16  Aligned_cols=48  Identities=25%  Similarity=0.242  Sum_probs=39.3

Q ss_pred             chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        104 ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       104 ~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++.+.+..+....  .-||+.-|||+..+|..-+..+|.++|.+||++..
T Consensus       168 ~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~  215 (229)
T COG1411         168 PDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE  215 (229)
T ss_pred             CCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence            4555665554433  67899999999999999999999999999999875

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=88.22  E-value=6.1  Score=34.22  Aligned_cols=69  Identities=20%  Similarity=0.170  Sum_probs=44.4

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~~  154 (202)
                      ++...++|||+|-+-+  +      ..+.+.+..+.+.+...+|++...|-.-.-.....-.+| ...|..|...++.
T Consensus       172 a~aY~eAGAD~ifv~~--~------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~a  241 (290)
T TIGR02321       172 GQAYEEAGADAILIHS--R------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA  241 (290)
T ss_pred             HHHHHHcCCCEEEecC--C------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHH
Confidence            4667899999998843  1      135566777777775557886654321112333455678 7889999877654

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=88.09  E-value=5.8  Score=33.33  Aligned_cols=63  Identities=24%  Similarity=0.163  Sum_probs=38.5

Q ss_pred             HHHHHHHhcC-CCEEEEec----cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         55 DVTWLKTITK-LPIVLKGI----LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        55 ~i~~i~~~~~-~Pv~vK~~----~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      .++.|++.++ .||++=.-    .++    +.+++++++|+++|.+-+.        ....+.+..++++   .+||++=
T Consensus        63 ~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~--------~~~~~~i~ai~~a---~i~ViaR  131 (240)
T cd06556          63 HVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG--------EWHIETLQMLTAA---AVPVIAH  131 (240)
T ss_pred             HHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc--------HHHHHHHHHHHHc---CCeEEEE
Confidence            5566666664 69988653    232    3368899999999999542        1122233444332   4888885


Q ss_pred             cCC
Q psy16780        126 GGV  128 (202)
Q Consensus       126 GGI  128 (202)
                      -|.
T Consensus       132 td~  134 (240)
T cd06556         132 TGL  134 (240)
T ss_pred             eCC
Confidence            554

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK01362 putative translaldolase; Provisional

Probab=88.07  E-value=14  Score=30.57  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .+.++++++..+.||.+=.. .+    .++++.+.+.+-+ +.+-         .|.+.+.+..++......+++-++. 
T Consensus        40 ~~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~~~~-i~iK---------IP~T~~G~~a~~~L~~~Gi~v~~T~-  108 (214)
T PRK01362         40 EEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAPN-VVVK---------IPMTPEGLKAVKALSKEGIKTNVTL-  108 (214)
T ss_pred             HHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHhCCC-EEEE---------eCCCHHHHHHHHHHHHCCCceEEee-
Confidence            35788888887778876543 22    3556777776533 4331         1445444544433333368888876 


Q ss_pred             CCCHHHHHHHHHhCCCEEE
Q psy16780        128 VRYGTDVFKALALGAKMVF  146 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~  146 (202)
                      |.|..++..+..+||+.|.
T Consensus       109 vfs~~Qa~~Aa~aGa~yis  127 (214)
T PRK01362        109 IFSANQALLAAKAGATYVS  127 (214)
T ss_pred             ecCHHHHHHHHhcCCcEEE
Confidence            9999999999999999764

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=88.03  E-value=4.5  Score=35.64  Aligned_cols=75  Identities=31%  Similarity=0.320  Sum_probs=53.1

Q ss_pred             HHHHHHHHcCCcEEEeecc---CcCCCCCc---cchHHHHHHHHHHhCC-CcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         76 EDAKIGVEMGASAIMVSNH---GGRQLDYV---PASIEALPEIAKAVGH-KVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~---gg~~~~~~---~~~~~~l~~i~~~~~~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.++.+.++|++.|.++..   +|.....+   .++++.+.++++.++. ++-++..-|+.+.+|+..+..+|++.|-++
T Consensus        28 ~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~  107 (333)
T TIGR03217        28 AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVA  107 (333)
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEE
Confidence            4567889999999999632   22333322   3466777777666532 344455668889999999999999999988


Q ss_pred             HH
Q psy16780        149 RP  150 (202)
Q Consensus       149 ~~  150 (202)
                      ..
T Consensus       108 ~~  109 (333)
T TIGR03217       108 TH  109 (333)
T ss_pred             ec
Confidence            63

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=87.75  E-value=14  Score=31.42  Aligned_cols=39  Identities=13%  Similarity=0.296  Sum_probs=27.4

Q ss_pred             HHHHHHHhc--CCCEEEEec-cC----HHHHHHHHHcCCcEEEeec
Q psy16780         55 DVTWLKTIT--KLPIVLKGI-LT----AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        55 ~i~~i~~~~--~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~   93 (202)
                      +++.+.+.+  ++||++... .+    .+.++.+.++|+|++.+..
T Consensus        56 ~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p  101 (285)
T TIGR00674        56 VIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT  101 (285)
T ss_pred             HHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence            444444443  589998765 22    4567889999999999863

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=87.73  E-value=1.4  Score=36.94  Aligned_cols=44  Identities=20%  Similarity=0.094  Sum_probs=36.7

Q ss_pred             ccccHHHHHHHHHhcC-CCEEEE-eccCHHHHHHHHHcCCcEEEee
Q psy16780         49 ETINWSDVTWLKTITK-LPIVLK-GILTAEDAKIGVEMGASAIMVS   92 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~-~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~   92 (202)
                      +...|+.|+++++.++ +|||.= .+.+.+++....+.|+|+|.+.
T Consensus       175 ~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg  220 (231)
T TIGR00736       175 PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA  220 (231)
T ss_pred             chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence            3357999999999984 998743 3589999999999999999884

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=87.73  E-value=9.4  Score=34.07  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             cCHHHHHHHHH-c----CCcEEEeeccCcCCCC-Ccc--chHHHHHHHHHHh--CCCcE------EEEecCCCCH-HHHH
Q psy16780         73 LTAEDAKIGVE-M----GASAIMVSNHGGRQLD-YVP--ASIEALPEIAKAV--GHKVD------VYLDGGVRYG-TDVF  135 (202)
Q Consensus        73 ~~~~~a~~l~~-a----G~d~I~v~~~gg~~~~-~~~--~~~~~l~~i~~~~--~~~ip------iia~GGI~~~-~D~~  135 (202)
                      .+|++|+...+ .    |+|.+-++-+.-...+ .+.  -+++.|.++.+.+  ..++|      ++.-||=..+ +++.
T Consensus       195 TdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~  274 (357)
T TIGR01520       195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIK  274 (357)
T ss_pred             CCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHH
Confidence            36788888765 3    8999887642211222 122  3667788884322  11455      9998876554 8899


Q ss_pred             HHHHhCCCEEEEcHHHHH
Q psy16780        136 KALALGAKMVFVGRPALW  153 (202)
Q Consensus       136 kal~~GAd~V~ig~~~l~  153 (202)
                      +++.+|..=|-+++-+-.
T Consensus       275 kai~~GI~KINi~Tdl~~  292 (357)
T TIGR01520       275 EALSYGVVKMNIDTDTQW  292 (357)
T ss_pred             HHHHCCCeEEEeCcHHHH
Confidence            999999999999997654

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=87.70  E-value=3.8  Score=35.44  Aligned_cols=83  Identities=24%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C-CCCccchHHH----HHHHHHHhCCCcEEEEec--CCCCHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q-LDYVPASIEA----LPEIAKAVGHKVDVYLDG--GVRYGTD  133 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~-~~~~~~~~~~----l~~i~~~~~~~ipiia~G--GI~~~~D  133 (202)
                      +-|+.+=++.++-.|+.+.++|.+++.+|+.+-.   . .|.+..+++.    +++|.+.+  ++||+++.  |..++..
T Consensus        17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n   94 (289)
T COG2513          17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN   94 (289)
T ss_pred             CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence            4677777788999999999999999999885321   1 2444444443    34455555  89999954  6666444


Q ss_pred             HH----HHHHhCCCEEEEc
Q psy16780        134 VF----KALALGAKMVFVG  148 (202)
Q Consensus       134 ~~----kal~~GAd~V~ig  148 (202)
                      +.    ++..+|+.++.|=
T Consensus        95 vartV~~~~~aG~agi~iE  113 (289)
T COG2513          95 VARTVRELEQAGAAGIHIE  113 (289)
T ss_pred             HHHHHHHHHHcCcceeeee
Confidence            44    5556798887763

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=87.52  E-value=8.7  Score=32.67  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=26.9

Q ss_pred             HHHHHHHhc--CCCEEEEecc-----CHHHHHHHHHcCCcEEEeec
Q psy16780         55 DVTWLKTIT--KLPIVLKGIL-----TAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        55 ~i~~i~~~~--~~Pv~vK~~~-----~~~~a~~l~~aG~d~I~v~~   93 (202)
                      +++.+.+.+  ++||++....     +.+.++.+.++|+|++.+..
T Consensus        59 l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~  104 (289)
T PF00701_consen   59 LLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP  104 (289)
T ss_dssp             HHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred             HHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec
Confidence            445555443  6899998652     24667889999999998864

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=87.39  E-value=0.65  Score=38.50  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.+.++.+.+.|++.++++-..-.+..+......-+..+++..+.+.+++.+||||-.. ..+.-..+.|.+.+|||+.
T Consensus       117 ~t~~~~~~l~~~g~~~~v~h~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr~~~-~~~~dq~rvd~iVVGR~It  195 (218)
T PRK13305        117 WTLDDARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPAD-LPLFKDIRVKAFIAGRALA  195 (218)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcCccc-cccccccCCCEEEECCccc
Confidence            455666777788887544421100000111112233455555555567799999998422 2233456789999999998


Q ss_pred             HHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        153 WGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       153 ~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      .+   ..+   ....+.++++++.
T Consensus       196 ~A---~dP---~~aa~~i~~~i~~  213 (218)
T PRK13305        196 GA---ANP---AQVAADFHAQIDA  213 (218)
T ss_pred             CC---CCH---HHHHHHHHHHHHH
Confidence            53   233   2344555555543

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=87.38  E-value=6.3  Score=38.28  Aligned_cols=71  Identities=27%  Similarity=0.249  Sum_probs=54.8

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.|+...+.||++|.|-.-.  ...  ..+.+.|..+++.+  ++||+.-==|-+..++.++..+|||+|.+=-.++
T Consensus        74 ~~a~~y~~~GA~aiSVlTe~--~~F--~Gs~~~l~~vr~~v--~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L  144 (695)
T PRK13802         74 ALAREYEQGGASAISVLTEG--RRF--LGSLDDFDKVRAAV--HIPVLRKDFIVTDYQIWEARAHGADLVLLIVAAL  144 (695)
T ss_pred             HHHHHHHHcCCcEEEEecCc--CcC--CCCHHHHHHHHHhC--CCCEEeccccCCHHHHHHHHHcCCCEeehhHhhc
Confidence            56788889999999986421  111  12456777777777  8999998889999999999999999998755554

>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []

Probab=87.27  E-value=14  Score=29.99  Aligned_cols=81  Identities=26%  Similarity=0.267  Sum_probs=54.6

Q ss_pred             hcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--------CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780         62 ITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--------GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD  133 (202)
Q Consensus        62 ~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--------gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D  133 (202)
                      ..+.-||. .+.++++|+.+.++|+-+|..--+        ||-   ...++...+.++.+++  .|||++---|....+
T Consensus        12 mlkGGVIM-DV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGV---aRMsDP~~I~eI~~aV--sIPVMAK~RIGHfvE   85 (208)
T PF01680_consen   12 MLKGGVIM-DVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGHFVE   85 (208)
T ss_dssp             TTTTEEEE-EESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS------S--HHHHHHHHHH---SSEEEEEEETT-HHH
T ss_pred             HhcCCeEE-EecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCc---cccCCHHHHHHHHHhe--Eeceeeccccceeeh
Confidence            34455555 467899999999999988876432        221   1135677889999998  999999999988888


Q ss_pred             HHHHHHhCCCEEEEc
Q psy16780        134 VFKALALGAKMVFVG  148 (202)
Q Consensus       134 ~~kal~~GAd~V~ig  148 (202)
                      +.-.-++|.|.+-=.
T Consensus        86 AqiLealgVD~IDES  100 (208)
T PF01680_consen   86 AQILEALGVDYIDES  100 (208)
T ss_dssp             HHHHHHTT-SEEEEE
T ss_pred             hhhHHHhCCceeccc
Confidence            866667899987543

Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....

>PRK02227 hypothetical protein; Provisional

Probab=87.23  E-value=4  Score=34.36  Aligned_cols=75  Identities=28%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE-ecCCC-CHHHHHHH----HHhCCCEEE
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL-DGGVR-YGTDVFKA----LALGAKMVF  146 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia-~GGI~-~~~D~~ka----l~~GAd~V~  146 (202)
                      .+.++|+.+.++|+|.|++-+-.  ...-|.-....+++++..++++.||=+ .|++- .+..+..+    -..|+|.|-
T Consensus         8 r~~eEA~~Al~~GaDiIDvK~P~--~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVK   85 (238)
T PRK02227          8 RNLEEALEALAGGADIIDVKNPK--EGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVK   85 (238)
T ss_pred             CCHHHHHHHHhcCCCEEEccCCC--CCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEE
Confidence            57899999999999999996521  001122244567788888877788877 45543 34333333    236999999


Q ss_pred             EcH
Q psy16780        147 VGR  149 (202)
Q Consensus       147 ig~  149 (202)
                      +|-
T Consensus        86 vGl   88 (238)
T PRK02227         86 VGL   88 (238)
T ss_pred             EcC
Confidence            985

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=87.05  E-value=2.5  Score=37.33  Aligned_cols=65  Identities=22%  Similarity=0.163  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      |.++++.|.++|+|.|.++-..       ..+.++++++++.+  ++|++++=-.. ..-++++.+.|++.+=|-
T Consensus        38 Tv~QI~~L~~aG~dIVRvtv~~-------~e~A~A~~~Ik~~~--~vPLVaDiHf~-~rla~~~~~~g~~k~RIN  102 (361)
T COG0821          38 TVAQIKALERAGCDIVRVTVPD-------MEAAEALKEIKQRL--NVPLVADIHFD-YRLALEAAECGVDKVRIN  102 (361)
T ss_pred             HHHHHHHHHHcCCCEEEEecCC-------HHHHHHHHHHHHhC--CCCEEEEeecc-HHHHHHhhhcCcceEEEC
Confidence            4577899999999999986421       23566789998888  89999976544 777888888998887653

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=86.95  E-value=0.27  Score=39.45  Aligned_cols=46  Identities=26%  Similarity=0.342  Sum_probs=35.9

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      -|-..-++++++++.++.|++..+- .+.+++..++++|+++|..|+
T Consensus       124 lPg~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~  170 (175)
T PF04309_consen  124 LPGVMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN  170 (175)
T ss_dssp             ESCCHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred             chHHHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence            4444467899999999999998864 789999999999999998765

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=86.88  E-value=6  Score=33.67  Aligned_cols=68  Identities=29%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.++...+.||++|.|-.-.. .+   ....+.|+.+++.+  .+||..===|-++.++..|...|||+|.+=-
T Consensus        70 ~ia~~Ye~~GAa~iSVLTd~~-~F---~Gs~e~L~~v~~~v--~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~  137 (254)
T COG0134          70 EIAKAYEEGGAAAISVLTDPK-YF---QGSFEDLRAVRAAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIV  137 (254)
T ss_pred             HHHHHHHHhCCeEEEEecCcc-cc---CCCHHHHHHHHHhc--CCCeeeccCCCCHHHHHHHHHcCcccHHHHH
Confidence            557888889999999854221 11   12456777777777  8999998889999999999999999986533

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=86.77  E-value=2  Score=33.59  Aligned_cols=45  Identities=20%  Similarity=0.305  Sum_probs=37.9

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeec
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      +...++.++++++..++||++-+..+.+.++.+.++|+|++.++.
T Consensus       135 ~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~  179 (196)
T cd00564         135 PPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVIS  179 (196)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEeh
Confidence            344678899998888899998777788999999999999998854

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=86.71  E-value=1.7  Score=34.80  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=37.9

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      |-..-++++++.++++.||+.++- .+.|++..++++||-++.-++
T Consensus       129 PGv~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~  174 (181)
T COG1954         129 PGVMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSN  174 (181)
T ss_pred             CcccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence            333466999999999999998864 789999999999999887655

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=86.67  E-value=11  Score=33.40  Aligned_cols=81  Identities=16%  Similarity=0.153  Sum_probs=55.5

Q ss_pred             cCHHHHHHHHHc-----CCcEEEeeccCcCCCCC-ccc--hHHHHHHH----HHHhC----CCcEEEEecCCCCH-HHHH
Q psy16780         73 LTAEDAKIGVEM-----GASAIMVSNHGGRQLDY-VPA--SIEALPEI----AKAVG----HKVDVYLDGGVRYG-TDVF  135 (202)
Q Consensus        73 ~~~~~a~~l~~a-----G~d~I~v~~~gg~~~~~-~~~--~~~~l~~i----~~~~~----~~ipiia~GGI~~~-~D~~  135 (202)
                      .++++|....+.     |+|.+-++.+.-...+. +.|  +++.|.++    ++.++    .++|++.-||=..+ +++.
T Consensus       183 TdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~  262 (345)
T cd00946         183 TQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIR  262 (345)
T ss_pred             CCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHH
Confidence            368888888764     89988876532222222 223  56678887    33331    26899998876554 7788


Q ss_pred             HHHHhCCCEEEEcHHHHH
Q psy16780        136 KALALGAKMVFVGRPALW  153 (202)
Q Consensus       136 kal~~GAd~V~ig~~~l~  153 (202)
                      +++..|..=|-++|-+-.
T Consensus       263 kai~~GI~KiNi~T~l~~  280 (345)
T cd00946         263 EAISYGVVKMNIDTDTQW  280 (345)
T ss_pred             HHHHcCCeeEEeCcHHHH
Confidence            899999999999997654

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=86.58  E-value=0.25  Score=44.06  Aligned_cols=116  Identities=19%  Similarity=0.101  Sum_probs=82.3

Q ss_pred             ccCCcc-eecccCCCccccc--------------CCCC-------cchhHHHhhhccCccccH--HHHHHHHHhcCCCEE
Q psy16780         13 LVLSQY-LLANFSGKLSQLS--------------NTSD-------SSSLLAYITSQLDETINW--SDVTWLKTITKLPIV   68 (202)
Q Consensus        13 ~~p~~~-~~~n~~~~~~~~~--------------~~~~-------~~~~~~~~~~~~d~~~~~--~~i~~i~~~~~~Pv~   68 (202)
                      -+|+.+ +++|.++.+....              ++++       .+.+|+..++++|+.+..  +.|+.+.+....|++
T Consensus       126 ~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i  205 (360)
T COG1304         126 FAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVI  205 (360)
T ss_pred             hhHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcc
Confidence            367778 8889988754331              2333       455689999999999943  367777778899999


Q ss_pred             EEec---cCHHHHHHHHHcCCcE-EEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         69 LKGI---LTAEDAKIGVEMGASA-IMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        69 vK~~---~~~~~a~~l~~aG~d~-I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      .|..   .+.+.+..+...|+.. +++.+.+|+++++....        .+ ++   =..+||+.|..-+.+....
T Consensus       206 ~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vs--------nh-gg---rqlD~g~st~~~L~ei~~a  269 (360)
T COG1304         206 SKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVS--------NH-GG---RQLDWGISTADSLPEIVEA  269 (360)
T ss_pred             cHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEE--------cC-CC---ccccCCCChHHHHHHHHHH
Confidence            9987   5678888899999999 88988888775432100        00 11   3457888888877776653

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=86.53  E-value=1.1  Score=38.37  Aligned_cols=40  Identities=33%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhcCCCEEE-EeccCHHHHHHHHHcCCcEEEee
Q psy16780         53 WSDVTWLKTITKLPIVL-KGILTAEDAKIGVEMGASAIMVS   92 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~v-K~~~~~~~a~~l~~aG~d~I~v~   92 (202)
                      .+.+.++++.+++||+. ..+.+++++..++.+|+|+|.++
T Consensus       223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig  263 (300)
T TIGR01037       223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG  263 (300)
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence            57888999989999984 55689999999999999999884

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=86.46  E-value=7.2  Score=34.73  Aligned_cols=85  Identities=19%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-C
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-Y  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~  130 (202)
                      -.+.++++++++++|++- .+.+.+.+..+.+. +|.+.+..+.       ..+...|.++.+   .+.||+.+-|.. +
T Consensus       153 gl~~L~~~~~e~Gl~~~t-ev~d~~~v~~~~~~-~d~lqIga~~-------~~n~~LL~~va~---t~kPVllk~G~~~t  220 (352)
T PRK13396        153 ALELLAAAREATGLGIIT-EVMDAADLEKIAEV-ADVIQVGARN-------MQNFSLLKKVGA---QDKPVLLKRGMAAT  220 (352)
T ss_pred             HHHHHHHHHHHcCCcEEE-eeCCHHHHHHHHhh-CCeEEECccc-------ccCHHHHHHHHc---cCCeEEEeCCCCCC
Confidence            356788888889999884 67888999999888 8999996532       224455565533   378999999999 9


Q ss_pred             HHHHHHHHH----hCCCEEEEc
Q psy16780        131 GTDVFKALA----LGAKMVFVG  148 (202)
Q Consensus       131 ~~D~~kal~----~GAd~V~ig  148 (202)
                      .+|+..+..    .|..-|+++
T Consensus       221 ~ee~~~A~e~i~~~Gn~~viL~  242 (352)
T PRK13396        221 IDEWLMAAEYILAAGNPNVILC  242 (352)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEE
Confidence            999887765    376545444

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=86.46  E-value=8.2  Score=29.97  Aligned_cols=90  Identities=18%  Similarity=0.164  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cCHH-HHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LTAE-DAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~~~-~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+++...-+..++-|+.-.. .+++ .++.+.+..+|.|.+|+..|..    ..... .+..+++.=.+++. +..||+-
T Consensus        29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h----~~l~~~lve~lre~G~~~i~-v~~GGvi  103 (143)
T COG2185          29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGH----LTLVPGLVEALREAGVEDIL-VVVGGVI  103 (143)
T ss_pred             hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchH----HHHHHHHHHHHHHhCCcceE-EeecCcc
Confidence            34666666677888887654 4564 4677889999999998853321    11111 22223332223455 4679999


Q ss_pred             CHHHHHHHHHhCCCEEEE
Q psy16780        130 YGTDVFKALALGAKMVFV  147 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~i  147 (202)
                      .++|..+.-+.|++.+.-
T Consensus       104 p~~d~~~l~~~G~~~if~  121 (143)
T COG2185         104 PPGDYQELKEMGVDRIFG  121 (143)
T ss_pred             CchhHHHHHHhCcceeeC
Confidence            999988888899887753

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=86.16  E-value=11  Score=33.16  Aligned_cols=97  Identities=18%  Similarity=0.085  Sum_probs=53.6

Q ss_pred             HHHHHHHh-cCCCEEEEecc--------CH-HHHHHHHHcC--CcEEEeecc-----CcCCCCCccchHHHHHHHHHHhC
Q psy16780         55 DVTWLKTI-TKLPIVLKGIL--------TA-EDAKIGVEMG--ASAIMVSNH-----GGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        55 ~i~~i~~~-~~~Pv~vK~~~--------~~-~~a~~l~~aG--~d~I~v~~~-----gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      .++.+++. .++||++=+.-        +. +.++.+.+++  +|++.+.-.     +++.........+.+..+++.++
T Consensus       127 ~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~  206 (344)
T PRK05286        127 LAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQA  206 (344)
T ss_pred             HHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHh
Confidence            55556554 57899987642        22 3344444444  999988532     12221111122334566666653


Q ss_pred             C---CcEEEE--ecCCC--CHHHHHHHHH-hCCCEEEEcHHH
Q psy16780        118 H---KVDVYL--DGGVR--YGTDVFKALA-LGAKMVFVGRPA  151 (202)
Q Consensus       118 ~---~ipiia--~GGI~--~~~D~~kal~-~GAd~V~ig~~~  151 (202)
                      .   ++||++  +-++.  ...++++++. .|||++.+...+
T Consensus       207 ~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~  248 (344)
T PRK05286        207 ELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT  248 (344)
T ss_pred             ccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence            1   388887  43433  2455666654 699998886543

>KOG0538|consensus

Probab=86.14  E-value=3.5  Score=36.16  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +|.-+..++...  +.||+.-| |-+++|+.+|.+.|++++.+.-
T Consensus       211 ~W~Di~wLr~~T--~LPIvvKG-ilt~eDA~~Ave~G~~GIIVSN  252 (363)
T KOG0538|consen  211 SWKDIKWLRSIT--KLPIVVKG-VLTGEDARKAVEAGVAGIIVSN  252 (363)
T ss_pred             ChhhhHHHHhcC--cCCeEEEe-ecccHHHHHHHHhCCceEEEeC
Confidence            455666665544  89999865 9999999999999999999864

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=85.92  E-value=1.9  Score=37.22  Aligned_cols=52  Identities=17%  Similarity=0.393  Sum_probs=44.3

Q ss_pred             HhhhccCccccHHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeec
Q psy16780         42 YITSQLDETINWSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      |...-+.|.+.++.+++|++.+++|+.+=+.  .+.++.+++.+.|+.-|.++.
T Consensus       178 HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T  231 (282)
T TIGR01858       178 HGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT  231 (282)
T ss_pred             ccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            5555568999999999999999999988765  567889999999999998854

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=85.92  E-value=7.9  Score=33.51  Aligned_cols=82  Identities=20%  Similarity=0.098  Sum_probs=54.2

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc---C-CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG---R-QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGTD  133 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg---~-~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~D  133 (202)
                      +-++.+-++.+.-.|+.+.++|.+++-+++.+-   . ..|.+..+++    .+++|.+.+  ++||+++.  |..+..+
T Consensus        14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~   91 (290)
T TIGR02321        14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN   91 (290)
T ss_pred             CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence            445655567889999999999999999987521   1 1244433333    345555555  89999954  5555555


Q ss_pred             H----HHHHHhCCCEEEE
Q psy16780        134 V----FKALALGAKMVFV  147 (202)
Q Consensus       134 ~----~kal~~GAd~V~i  147 (202)
                      +    .++..+|+.++.|
T Consensus        92 v~~tV~~~~~aGvagi~I  109 (290)
T TIGR02321        92 VHYVVPQYEAAGASAIVM  109 (290)
T ss_pred             HHHHHHHHHHcCCeEEEE
Confidence            5    3444589988877

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional

Probab=85.89  E-value=3.8  Score=36.61  Aligned_cols=74  Identities=23%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             HHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.++.+.+.|.++..++|- .|.   ....-.+.+..+...++.+.|....| +.++.|+..++++|+|.+=-..|..
T Consensus       198 ~~sa~~l~~~~~~G~aIGGl~~ge---~~~~~~~~v~~~~~~lp~~kPryl~G-vg~P~~i~~~v~~GvD~FD~~~p~r  272 (366)
T PRK00112        198 RESAKGLVEIDFDGYAIGGLSVGE---PKEEMYRILEHTAPLLPEDKPRYLMG-VGTPEDLVEGVARGVDMFDCVMPTR  272 (366)
T ss_pred             HHHHHHHHhCCCceeEeccccCCC---CHHHHHHHHHHHHhhCCCcCCeEecC-CCCHHHHHHHHHcCCCEEeeCCccc
Confidence            35567788899999998763 221   11112234666666777789998877 9999999999999999876555544

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=85.87  E-value=9.8  Score=32.29  Aligned_cols=85  Identities=13%  Similarity=0.100  Sum_probs=61.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC-CCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG-VRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG-I~~  130 (202)
                      -.+.+.+++++.++|++- .+.+.+.+..+.+ .+|.+.+..+.       ..+.+.|..+.+   ...||+.+-| ..+
T Consensus        67 gl~~L~~~~~~~Gl~~~T-ev~d~~~v~~~~e-~vdilqIgs~~-------~~n~~LL~~va~---tgkPVilk~G~~~t  134 (250)
T PRK13397         67 GIRYLHEVCQEFGLLSVS-EIMSERQLEEAYD-YLDVIQVGARN-------MQNFEFLKTLSH---IDKPILFKRGLMAT  134 (250)
T ss_pred             HHHHHHHHHHHcCCCEEE-eeCCHHHHHHHHh-cCCEEEECccc-------ccCHHHHHHHHc---cCCeEEEeCCCCCC
Confidence            356788888888999886 7788999999988 69999996532       223455565543   3789999999 888


Q ss_pred             HHHHHHHHH----hCCCEEEEc
Q psy16780        131 GTDVFKALA----LGAKMVFVG  148 (202)
Q Consensus       131 ~~D~~kal~----~GAd~V~ig  148 (202)
                      .+|+..+..    .|..-+++.
T Consensus       135 ~~e~~~A~e~i~~~Gn~~i~L~  156 (250)
T PRK13397        135 IEEYLGALSYLQDTGKSNIILC  156 (250)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEE
Confidence            888887765    476544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1gyl_A	369	Involvement Of Tyr24 And Trp108 In Substrate Bindin		7e-51
1gox_A	370	Refined Structure Of Spinach Glycolate Oxidase At 2		8e-51
1al7_A	359	Three-Dimensional Structures Of Glycolate Oxidase W		9e-51
2nzl_A	392	Crystal Structure Of Human Hydroxyacid Oxidase 1 Le		6e-48
2w0u_A	370	Crystal Structure Of Human Glycolate Oxidase In Com		7e-48
2rdt_A	387	Crystal Structure Of Human Glycolate Oxidase (Go) I		7e-48
3sgz_A	352	High Resolution Crystal Structure Of Rat Long Chain		1e-44
1tb3_A	352	Crystal Structure Analysis Of Recombinant Rat Kidne		1e-44
2cdh_0	226	Architecture Of The Thermomyces Lanuginosus Fungal		2e-43
1qcw_A	410	Flavocytochrome B2, Arg289lys Mutant Length = 410		2e-32
1kbj_A	412	Crystallographic Study Of The Recombinant Flavin-Bi		3e-32
1ltd_A	506	The 2.6 Angstroms Refined Structure Of The Escheric		4e-32
1sze_A	511	L230a Mutant Flavocytochrome B2 With Benzoylformate		4e-32
1fcb_A	511	Molecular Structure Of Flavocytochrome B2 At 2.4 An		4e-32
1ldc_A	511	X-Ray Structure Of Two Complexes Of The Y143f Flavo		4e-32
1szf_A	511	A198g:l230a Mutant Flavocytochrome B2 With Pyruvate		4e-32
2oz0_A	511	Mechanistic And Structural Studies Of H373q Flavocy		3e-31
1huv_A	380	Crystal Structure Of A Soluble Mutant Of The Membra		4e-28
2a7n_A	380	Crystal Structure Of The G81a Mutant Of The Active		5e-28
2j6x_A	374	The Crystal Structure Of Lactate Oxidase Length = 3		2e-24
2nli_A	368	Crystal Structure Of The Complex Between L-Lactate		2e-24
2du2_A	374	Crystal Structure Analysis Of The L-Lactate Oxidase		3e-24

>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369

Iteration: 1
 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 13  LVLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKG 71
            VL  +L L NF G               +Y+  Q+D +++W DV WL+TIT LPI++KG
Sbjct: 172 FVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKG 231
Query: 72  ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
           ++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR G
Sbjct: 232 VITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 291
Query: 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           TDVFKALALGA  VF+GRP ++ LA  G++GV+KVL ++ +EF+  +ALSGC S+ EI R
Sbjct: 292 TDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISR 351
Query: 192 EMVVHE 197
             +  +
Sbjct: 352 SHIAAD 357

>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 13  LVLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKG 71
            VL  +L L NF G               +Y+  Q+D +++W DV WL+TIT LPI++KG
Sbjct: 173 FVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKG 232
Query: 72  ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
           ++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR G
Sbjct: 233 VITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 292
Query: 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           TDVFKALALGA  VF+GRP ++ LA  G++GV+KVL ++ +EF+  +ALSGC S+ EI R
Sbjct: 293 TDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISR 352
Query: 192 EMVVHE 197
             +  +
Sbjct: 353 SHIAAD 358

>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359

Iteration: 1
 Score =  196 bits (497), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 129/183 (70%), Gaps = 1/183 (0%)
Query: 13  LVLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKG 71
            VL  +L L NF G               +Y+  Q+D +++W DV WL+TIT LPI++KG
Sbjct: 172 FVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKG 231
Query: 72  ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
           ++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR G
Sbjct: 232 VITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 291
Query: 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           TDVFKALALGA  VF+GRP ++ LA  G++GV+KVL ++ +EF+  +ALSGC S+ EI R
Sbjct: 292 TDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISR 351
Query: 192 EMV 194
             +
Sbjct: 352 SHI 354

>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392

Iteration: 1
 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 115/154 (74%)
Query: 41  AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD 100
           AY+   +D +I+W D+ WL+ +T LPIV KGIL  +DA+  V+ G + I+VSNHG RQLD
Sbjct: 229 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLD 288
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
            VPA+I+ LPEI +AV  KV+V+LDGGVR GTDV KALALGAK VFVGRP +WGLA  G+
Sbjct: 289 GVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGE 348
Query: 161 SGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
            GV+ VL+IL  EF  A+ALSGC +V  I + +V
Sbjct: 349 KGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 382

>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370

Iteration: 1
 Score =  186 bits (472), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 115/154 (74%)
Query: 41  AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD 100
           AY+   +D +I+W D+ WL+ +T LPIV KGIL  +DA+  V+ G + I+VSNHG RQLD
Sbjct: 207 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLD 266
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
            VPA+I+ LPEI +AV  KV+V+LDGGVR GTDV KALALGAK VFVGRP +WGLA  G+
Sbjct: 267 GVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGE 326
Query: 161 SGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
            GV+ VL+IL  EF  A+ALSGC +V  I + +V
Sbjct: 327 KGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360

>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387

Iteration: 1
 Score =  186 bits (472), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 115/154 (74%)
Query: 41  AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD 100
           AY+   +D +I+W D+ WL+ +T LPIV KGIL  +DA+  V+ G + I+VSNHG RQLD
Sbjct: 224 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLD 283
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
            VPA+I+ LPEI +AV  KV+V+LDGGVR GTDV KALALGAK VFVGRP +WGLA  G+
Sbjct: 284 GVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGE 343
Query: 161 SGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
            GV+ VL+IL  EF  A+ALSGC +V  I + +V
Sbjct: 344 KGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 377

>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 110/142 (77%)
Query: 53  WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
           W+D++ L++IT+LPI+LKGILT EDA++ ++     I+VSNHGGRQLD V ASI+AL E+
Sbjct: 206 WNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREV 265
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
             AV  K++VY+DGGVR GTDV KALALGA+ +F+GRP LWGLA  G+ GV++VLDIL  
Sbjct: 266 VAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTA 325
Query: 173 EFDQALALSGCTSVGEIQREMV 194
           E  + + LSGC SV EI  +++
Sbjct: 326 ELHRCMTLSGCQSVAEISPDLI 347

>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 110/142 (77%)
Query: 53  WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
           W+D++ L++IT+LPI+LKGILT EDA++ ++     I+VSNHGGRQLD V ASI+AL E+
Sbjct: 206 WNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREV 265
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
             AV  K++VY+DGGVR GTDV KALALGA+ +F+GRP LWGLA  G+ GV++VLDIL  
Sbjct: 266 VAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTA 325
Query: 173 EFDQALALSGCTSVGEIQREMV 194
           E  + + LSGC SV EI  +++
Sbjct: 326 ELHRCMTLSGCQSVAEISPDLI 347

>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 105/130 (80%)
Query: 53  WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
           W DV WL+TIT LPI++KG++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+
Sbjct: 97  WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEV 156
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
            KA   ++ V+LDGGVR GTDVFKALALGA  VF+GRP ++ LA  G++GV+KVL ++ +
Sbjct: 157 VKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRD 216
Query: 173 EFDQALALSG 182
           EF+  +ALSG
Sbjct: 217 EFELTMALSG 226

>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SNHGGRQLD+  A I
Sbjct: 225 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 284
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 285 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 344
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 345 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 377

>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SNHGGRQLD+  A I
Sbjct: 227 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 286
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 287 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 346
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 347 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 379

>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SNHGGRQLD+  A I
Sbjct: 321 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 380
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 381 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 440
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 441 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 473

>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SNHGGRQLD+  A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478

>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SNHGGRQLD+  A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478

>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SNHGGRQLD+  A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478

>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SNHGGRQLD+  A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478

>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 100/153 (65%), Gaps = 5/153 (3%)
Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
           +D ++ W D+  LK  TKLPIV+KG+   ED     E+G S +++SN GGRQLD+  A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNQGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
           E L E       + +  K++V++DGGVR GTDV KAL LGAK V +GRP L+  +  G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478

>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Query: 20  LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           L NF G               A ++ Q+D + NW  + WL+ +    +++KG+L+AEDA 
Sbjct: 181 LKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDAD 240
Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
             +  GA  +++SNHGGRQLD   + +E L +     G  V   +D G R G+D+ KALA
Sbjct: 241 RCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPV--LIDSGFRRGSDIVKALA 298
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LGA+ V +GR  L+GLA  G++GV +VL +L  + D+ LA  GC  +  +  + + +E
Sbjct: 299 LGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 356

>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Query: 20  LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           L NF G               A ++ Q+D + NW  + WL+ +    +++KG+L+AEDA 
Sbjct: 181 LKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDAD 240
Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
             +  GA  +++SNHGGRQLD   + +E L +     G  V   +D G R G+D+ KALA
Sbjct: 241 RCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPV--LIDSGFRRGSDIVKALA 298
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LGA+ V +GR  L+GLA  G++GV +VL +L  + D+ LA  GC  +  +  + + +E
Sbjct: 299 LGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 356

>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 83/142 (58%)
Query: 49  ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
           + I+  D+  +   + LP+ +KGI   EDA + ++ GAS I VSNHG RQL   P S + 
Sbjct: 220 QKISPRDIEEIAAHSGLPVFVKGIQHPEDADMAIKAGASGIWVSNHGARQLYEAPGSFDT 279
Query: 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLD 168
           LP IA+ V  +V +  D GVR G  V KALA GA +V +GRP L+GLA  G  G   VLD
Sbjct: 280 LPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 339
Query: 169 ILINEFDQALALSGCTSVGEIQ 190
               +  + + L+G  +V +++
Sbjct: 340 YFQKDLTRVMQLTGSQNVEDLK 361

>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 83/142 (58%)
Query: 49  ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
           + I+  D+  +   + LP+ +KGI   EDA + ++ GAS I VSNHG RQL   P S + 
Sbjct: 214 QKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDT 273
Query: 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLD 168
           LP IA+ V  +V +  D GVR G  V KALA GA +V +GRP L+GLA  G  G   VLD
Sbjct: 274 LPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 333
Query: 169 ILINEFDQALALSGCTSVGEIQ 190
               +  + + L+G  +V +++
Sbjct: 334 YFQKDLTRVMQLTGSQNVEDLK 355

>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 83/142 (58%)
Query: 49  ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
           + I+  D+  +   + LP+ +KGI   EDA + ++ GAS I VSNHG RQL   P S + 
Sbjct: 220 QKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDT 279
Query: 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLD 168
           LP IA+ V  +V +  D GVR G  V KALA GA +V +GRP L+GLA  G  G   VLD
Sbjct: 280 LPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 339
Query: 169 ILINEFDQALALSGCTSVGEIQ 190
               +  + + L+G  +V +++
Sbjct: 340 YFQKDLTRVMQLTGSQNVEDLK 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	2e-99
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	3e-99
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	6e-96
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	6e-95
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	7e-93
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	3e-92
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	4e-50
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	3e-45
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	6e-40
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	3e-34
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	2e-07
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	3e-07
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	8e-07
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	1e-06
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	2e-06
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	7e-06
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	2e-05
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	2e-05
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-05
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	3e-05
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	6e-05
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	6e-05
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	9e-05
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	1e-04
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	1e-04
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-04
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-04
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	3e-04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	6e-04
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	9e-04

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370

 Score =  291 bits (748), Expect = 2e-99
 Identities = 93/178 (52%), Positives = 131/178 (73%)

Query: 20  LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           L NF G      + ++ S L +Y+  Q+D +++W DV WL+TIT LPI++KG++TAEDA+
Sbjct: 181 LKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDAR 240

Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
           + V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GTDVFKALA
Sbjct: 241 LAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300

Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LGA  VF+GRP ++ LA  G++GV+KVL ++ +EF+  +ALSGC S+ EI R  +  +
Sbjct: 301 LGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 358

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392

 Score =  291 bits (748), Expect = 3e-99
 Identities = 97/185 (52%), Positives = 123/185 (66%), Gaps = 3/185 (1%)

Query: 20  LANFSG---KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAE 76
           + NF       S   N  D S L AY+   +D +I+W D+ WL+ +T LPIV KGIL  +
Sbjct: 205 MKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGD 264

Query: 77  DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK 136
           DA+  V+ G + I+VSNHG RQLD VPA+I+ LPEI +AV  KV+V+LDGGVR GTDV K
Sbjct: 265 DAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLK 324

Query: 137 ALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH 196
           ALALGAK VFVGRP +WGLA  G+ GV+ VL+IL  EF  A+ALSGC +V  I + +V  
Sbjct: 325 ALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRK 384

Query: 197 ETYYS 201
                
Sbjct: 385 NPLAV 389

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368

 Score =  282 bits (724), Expect = 6e-96
 Identities = 61/174 (35%), Positives = 90/174 (51%)

Query: 27  LSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGA 86
           + +    +     L  I     + I+  D+  +   + LP+ +KGI   EDA + ++ GA
Sbjct: 192 VQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGA 251

Query: 87  SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
           S I VSNHG RQL   P S + LP IA+ V  +V +  D GVR G  V KALA GA +V 
Sbjct: 252 SGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA 311

Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYY 200
           +GRP L+GLA  G  G   VLD    +  + + L+G  +V +++   +    Y 
Sbjct: 312 LGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNPYG 365

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380

 Score =  280 bits (719), Expect = 6e-95
 Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 2/182 (1%)

Query: 20  LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           L NF G      + ++     A ++ Q+D + NW  + WL+ +    +++KG+L+AEDA 
Sbjct: 181 LKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDAD 240

Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
             +  GA  +++SNHGGRQLD   + +E L +     G    V +D G R G+D+ KALA
Sbjct: 241 RCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTG--KPVLIDSGFRRGSDIVKALA 298

Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199
           LGA+ V +GR  L+GLA  G++GV +VL +L  + D+ LA  GC  +  +  + + +E  
Sbjct: 299 LGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEGV 358

Query: 200 YS 201
            +
Sbjct: 359 TN 360

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352

 Score =  274 bits (702), Expect = 7e-93
 Identities = 83/168 (49%), Positives = 115/168 (68%)

Query: 27  LSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGA 86
            + L    +     +        +  W+D++ L++IT+LPI+LKGILT EDA++ ++   
Sbjct: 180 KAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNV 239

Query: 87  SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
             I+VSNHGGRQLD V ASI+AL E+  AV  K++VY+DGGVR GTDV KALALGA+ +F
Sbjct: 240 QGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIF 299

Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           +GRP LWGLA  G+ GV++VLDIL  E  + + LSGC SV EI  +++
Sbjct: 300 LGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511

 Score =  278 bits (712), Expect = 3e-92
 Identities = 71/182 (39%), Positives = 111/182 (60%), Gaps = 5/182 (2%)

Query: 26  KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMG 85
           K  + +N  +S      ++  +D ++ W D+  LK  TKLPIV+KG+   ED     E+G
Sbjct: 305 KAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIG 364

Query: 86  ASAIMVSNHGGRQLDYVPASIEALPEIAKA-----VGHKVDVYLDGGVRYGTDVFKALAL 140
            S +++SNHGGRQLD+  A IE L E         +  K++V++DGGVR GTDV KAL L
Sbjct: 365 VSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCL 424

Query: 141 GAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYY 200
           GAK V +GRP L+  +  G++GV K ++IL +E + ++ L G TS+ E++ +++   T  
Sbjct: 425 GAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLK 484

Query: 201 SK 202
           ++
Sbjct: 485 AR 486

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349

 Score =  164 bits (418), Expect = 4e-50
 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 20/169 (11%)

Query: 46  QLDETINWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYV 102
               +     +  + +   +P+++K +   ++   A    E GA+A+ +  +GG     +
Sbjct: 160 DRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKI 219

Query: 103 P----------------ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
                            ++  +L EI         +   GG++   DV KA+ALGA    
Sbjct: 220 ENLRRQRQISFFNSWGISTAASLAEIRSEFP-ASTMIASGGLQDALDVAKAIALGASCTG 278

Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
           +    L  L  SG+ G+ + + +++ E    + + G  ++ ++Q+  +V
Sbjct: 279 MAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLV 327

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365

 Score =  152 bits (386), Expect = 3e-45
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 53  WSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS---- 105
              ++      +LP +LK +   +  +  +  +++G   + +S  GG    Y+       
Sbjct: 195 KKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGN 254

Query: 106 -----------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
                       + L   A+ +  KV++   GG+R+  D+ KAL LGAK V + R  L  
Sbjct: 255 RSYLNQWGQTTAQVLLN-AQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLEL 313

Query: 155 LAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
           +       V  +++    +    +    C ++ E++ 
Sbjct: 314 VEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRN 350

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368

 Score =  138 bits (350), Expect = 6e-40
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 28/169 (16%)

Query: 53  WSDVTWLKTITKLPIV---LKGILTAEDAKIGVEMGASAIMVSNHGGR------------ 97
              +  +     +PI+       ++ E AK+    G      S  GG             
Sbjct: 176 LEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIR 235

Query: 98  -----------QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
                       LD+   +  ++ E+  +V     +   GG+R G D  KA+ALGA +  
Sbjct: 236 RGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAG 294

Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
           +  P L      GK  + +    +I E   A+ L+G   V  +++  +V
Sbjct: 295 MALPVLKSAIE-GKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIV 342

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332

 Score =  123 bits (309), Expect = 3e-34
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 52  NWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS--- 105
              +          P+++K +   L+ E A    ++  +A+ V+  GG     V      
Sbjct: 169 GLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRF 228

Query: 106 ---------------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
                            A+ E+ + V   + +   GGV  GTD  KALALGA ++ V RP
Sbjct: 229 GEVRHPELCEIGIPTARAILEV-REVLPHLPLVASGGVYTGTDGAKALALGADLLAVARP 287

Query: 151 ALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
            L       +  V   +   + E   AL   G  +  E +  + 
Sbjct: 288 LLRPALEGAE-RVAAWIGDYLEELRTALFAIGARNPKEARGRVE 330

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 67  IVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG 126
           + +    + +D      +GA  I  +  G    D        L +     G    V  +G
Sbjct: 131 LTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDAG--CRVIAEG 188

Query: 127 GVRYGTDVFKALALGAKMVFVG 148
                    +A+  GA  V VG
Sbjct: 189 RYNSPALAAEAIRYGAWAVTVG 210

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 64  KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123
           ++ I + G  T +DAK  V++G +  +       +L  +  + + L ++ +     +++ 
Sbjct: 111 EIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELS 170

Query: 124 LDGGVRYGTDVFKALALGAKMVFVGRP 150
           + GG+     ++    +  K    GR 
Sbjct: 171 ITGGIVPED-IYLFEGIKTKTFIAGRA 196

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 56  VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDYV 102
           +  +K+   + +++  ++T E  K  +E GA  I             +V+  G      V
Sbjct: 137 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVG------V 190

Query: 103 PASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           P  I A+ + +       + +  DGG+RY  D+ KALA+GA  V +G
Sbjct: 191 P-QITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 56  VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDYV 102
           +  +K+   + +++  ++T E  K  +E GA  I             +V+  G      V
Sbjct: 176 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVG------V 229

Query: 103 PASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           P  I A+ + +       + +  DGG+RY  D+ KALA+GA  V +G
Sbjct: 230 P-QITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 47  LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG----GRQLDYV 102
           LDE +++              ++  I T E+AK    +G   I  + HG     +     
Sbjct: 106 LDELVSYIRTHAPNVE-----IMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLY 160

Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
               + L ++ ++V     V  +G V       + + LG     VG
Sbjct: 161 QNDFQFLKDVLQSVD--AKVIAEGNVITPDMYKRVMDLGVHCSVVG 204

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 49  ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMV-----SNHGGRQLDYVP 103
                 ++        +P++  G+     A   +  GA  I+V     +N     ++ V 
Sbjct: 196 TGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGME-VS 254

Query: 104 ASIEALPEIAKA--------VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
               A+ ++A A         G  V +  DG +    DV KA+A GA  V +G P
Sbjct: 255 -MATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSP 308

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 67  IVLKGILTAEDAKIGVEMGASAIMVSNHG-GRQLDYVPASIEALPEIAKAVGHKVDVYLD 125
           + +    T  +     + G   I  +  G    +  V   +  + +++ A      V  +
Sbjct: 131 LAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAE 187

Query: 126 GGVRYGTDVFKALALGAKMVFVG 148
           G          A+  GA  V VG
Sbjct: 188 GRYNTPALAANAIEHGAWAVTVG 210

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 56  VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA 115
           +  +K      +++  I T ++  +  + G   +  +  G         +   +  I   
Sbjct: 124 IRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIEAL 182

Query: 116 VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
               + V  +G +    +  K   LG   + VG
Sbjct: 183 CKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 15/109 (13%)

Query: 56  VTWLKTI--TKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLD 100
           + W++     K+ +    I+  E  +   + GA  I                  G  Q  
Sbjct: 274 IGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQAT 333

Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
            V   +    +  +  G  + V  DGG+ Y   +  ALA+GA  + +GR
Sbjct: 334 AVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGR 382

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 22/108 (20%)

Query: 56  VTWLKTI-TKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           +   +     L I+   + TAE A+  +E G SA+             +V+  G      
Sbjct: 140 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVG------ 193

Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           VP  I A+ + A     + + V  DGG+R+  D+ KA+A GA  V VG
Sbjct: 194 VP-QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 22/108 (20%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           +  +K     L ++   I+T E A   + +GA  +             +V+  G      
Sbjct: 185 IKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVG------ 238

Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           VP  I A+ ++ +A     + +  DGG+R+  DV KA+A GA  V +G
Sbjct: 239 VP-QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 64  KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123
            + I L G  T E A+   + G   ++       Q   V      +  I +       V 
Sbjct: 108 DVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVT 167

Query: 124 LDGGVRYGTDVFKALALGAKMVFVGRP 150
           + GG+     +     +   +   GR 
Sbjct: 168 VTGGLALED-LPLFKGIPIHVFIAGRS 193

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 22/108 (20%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           +  +K     LP+V   + T E  +  ++ GA A+             +V+  G      
Sbjct: 269 LEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVG------ 322

Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           VP  + A+ E ++    + V +  DGG+RY  D+ KALA GA+ V VG
Sbjct: 323 VP-QLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 60  KTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK 119
               ++ + L G  T + A+  ++ G S  +        L       + L ++ K +   
Sbjct: 109 PDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMG 168

Query: 120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
             V + GG+   T +     +       GR 
Sbjct: 169 FRVSVTGGLSVDT-LKLFEGVDVFTFIAGRG 198

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 22/108 (20%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           V  ++     L I+   + TAE  K  +E GA+ +             +V+  G      
Sbjct: 288 VKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVG------ 341

Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           VP  + A+ + A     H + V  DGG++Y  D+ KALA GA +V +G
Sbjct: 342 VP-QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 22/108 (20%)

Query: 56  VTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           +   +     L I+   + TAE A+  +E G SA+             +V+  G      
Sbjct: 263 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVG------ 316

Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           VP  I A+ + A     + + V  DGG+R+  D+ KA+A GA  V VG
Sbjct: 317 VP-QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           +  ++       ++   I TAE A+   + G   +             +V+  G      
Sbjct: 265 IAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVG------ 318

Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           VP  + A+ + A     +   +  DGG++Y  D+ KALA G   V +G
Sbjct: 319 VP-QVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLG 365

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
           +  +K  + +  ++   + T E  +     GA A              + +  G      
Sbjct: 140 IQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFG------ 193

Query: 102 VPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
                + AL   AKA      +  DGG+R   DV K++  GA MV +G
Sbjct: 194 TGGWQLAALRWCAKAAS--KPIIADGGIRTNGDVAKSIRFGATMVMIG 239

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 56  VTWLKTITKLPIVLKGILTAE--------DA-KIGVEMGASAI----MVSNHGGRQLDYV 102
           +  ++       ++  I   +        DA K+G+  G  +I    +V+  G      V
Sbjct: 260 MKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGI--GPGSICTTRIVAGVG------V 311

Query: 103 PASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
           P  I A+  +A     + + V  DGG+RY  D+ KA+A GA  V +G
Sbjct: 312 P-QITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 26/110 (23%)

Query: 56  VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-GRQLDYVPASI------- 106
           V ++K     L ++   ++TA  AK  ++ G   + V   G G        SI       
Sbjct: 287 VHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRV---GMG------CGSICITQEVM 337

Query: 107 -------EALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
                   A+ ++A+      V +  DGG++    V KALALGA  V +G
Sbjct: 338 ACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMG 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	100.0
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	100.0
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.97
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	99.97
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	99.97
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.96
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.96
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.96
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.95
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.94
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	99.92
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	99.9
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.87
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	99.85
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.83
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.83
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	99.83
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.82
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.81
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	99.81
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	99.8
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.8
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.8
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	99.79
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.79
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	99.79
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	99.78
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.77
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	99.77
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	99.77
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	99.76
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	99.76
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	99.74
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	99.74
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.74
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.73
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.72
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	99.69
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	99.66
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.64
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	99.58
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	99.55
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	99.38
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	99.33
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	99.32
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	99.31
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	99.31
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	99.31
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	99.28
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	99.26
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.26
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	99.25
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	99.2
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	99.16
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	99.13
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.11
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	99.08
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	99.08
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	99.08
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	99.06
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	99.06
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.03
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	99.03
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	99.03
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	99.01
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	99.01
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	98.98
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	98.97
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	98.97
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	98.96
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.92
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.9
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	98.89
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	98.88
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	98.88
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	98.87
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	98.84
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	98.84
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	98.83
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.81
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	98.81
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	98.8
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	98.8
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.79
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.78
3oa3_A	288	Aldolase; structural genomics, seattle structural	98.78
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.77
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	98.76
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	98.75
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	98.75
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	98.74
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	98.73
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.73
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.72
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.7
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	98.7
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	98.69
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	98.69
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	98.68
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	98.68
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	98.64
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.64
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	98.64
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.64
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.63
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	98.63
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	98.63
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.62
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	98.58
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.58
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	98.58
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	98.58
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.54
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	98.54
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	98.44
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	98.42
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	98.41
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	98.37
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.34
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	98.34
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	98.32
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	98.31
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.28
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	98.27
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	98.25
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	98.24
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	98.24
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.23
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	98.21
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	98.2
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.19
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.17
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	98.16
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	98.15
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	98.14
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	98.13
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	98.12
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	98.11
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	98.11
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	98.11
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	98.1
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	98.09
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	98.07
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	98.05
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	98.05
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	98.03
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	98.01
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	98.0
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	97.99
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	97.97
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	97.95
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	97.9
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	97.89
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	97.88
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	97.88
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	97.85
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	97.85
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	97.84
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	97.84
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	97.81
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	97.81
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	97.8
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	97.79
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	97.76
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	97.75
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	97.75
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	97.73
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	97.7
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	97.67
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	97.66
1viz_A	240	PCRB protein homolog; structural genomics, unknown	97.66
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.59
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	97.58
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	97.58
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	97.55
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	97.55
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	97.54
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	97.53
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.53
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	97.5
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.45
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	97.43
3s1x_A	223	Probable transaldolase; alpha-beta barrel, conform	97.39
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.38
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	97.37
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	97.34
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	97.33
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	97.3
3r8r_A	212	Transaldolase; pentose phosphate pathway, schiff b	97.29
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	97.22
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	97.22
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	97.21
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.18
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.1
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.09
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	97.09
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	97.0
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	96.99
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	96.99
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	96.98
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.93
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.89
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	96.85
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	96.83
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	96.82
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	96.82
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	96.81
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	96.79
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	96.78
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	96.77
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	96.77
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	96.77
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	96.74
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	96.74
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	96.73
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	96.7
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	96.7
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.7
1vpx_A	230	Protein (transaldolase (EC 2.2.1.2)); TM0295, stru	96.7
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	96.69
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	96.68
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	96.68
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	96.66
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.66
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	96.65
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	96.64
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.63
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	96.62
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.61
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	96.59
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.58
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	96.57
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	96.56
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	96.56
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	96.56
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	96.51
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	96.5
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	96.46
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	96.44
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.43
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	96.41
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.41
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	96.4
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.38
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.32
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	96.31
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	96.29
1l6w_A	220	Fructose-6-phosphate aldolase 1; alpha-beta barrel	96.29
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	96.26
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	96.21
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	96.18
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	96.17
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.11
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	96.03
1wx0_A	223	Transaldolase; structural genomics, riken structur	96.02
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	96.0
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	95.95
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	95.93
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	95.93
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	95.93
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	95.88
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	95.84
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	95.83
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	95.77
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	95.74
2qgy_A	391	Enolase from the environmental genome shotgun sequ	95.73
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	95.7
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	95.68
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.64
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	95.59
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	95.56
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	95.46
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	95.44
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	95.4
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	95.4
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	95.36
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	95.34
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	95.29
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	95.27
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	95.22
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	95.2
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	95.12
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	95.12
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	95.12
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	95.09
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	95.06
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	95.01
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	95.01
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	94.98
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	94.96
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	94.95
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	94.93
3go2_A	409	Putative L-alanine-DL-glutamate epimerase; structu	94.91
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	94.84
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	94.82
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	94.82
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	94.77
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	94.77
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	94.76
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	94.66
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	94.66
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	94.61
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	94.61
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	94.59
2gl5_A	410	Putative dehydratase protein; structural genomics,	94.52
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	94.42
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	94.4
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	94.3
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	94.3
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	94.29
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	94.29
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	94.28
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	94.28
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	94.27
2poz_A	392	Putative dehydratase; octamer, structural genomics	94.22
2o56_A	407	Putative mandelate racemase; dehydratase, structur	94.2
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	94.18
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	94.17
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	94.14
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	94.11
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	94.07
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	94.06
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	94.05
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	94.04
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	94.04
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	94.01
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	94.0
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	93.95
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	93.77
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	93.63
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	93.62
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	93.58
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	93.55
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	93.55
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	93.53
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	93.53
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	93.52
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	93.51
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	93.49
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	93.44
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	93.38
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	93.36
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	93.34
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	93.32
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	93.3
1viz_A	240	PCRB protein homolog; structural genomics, unknown	93.3
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	93.3
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	93.28
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	93.25
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	93.22
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	93.2
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	93.19
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	93.18
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	93.11
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	93.02
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	93.01
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	92.97
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	92.94
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	92.9
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	92.86
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	92.82
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	92.76
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	92.7
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	92.68
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	92.57
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	92.55
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	92.54
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	92.54
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	92.5
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	92.49
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	92.46
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	92.44
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	92.43
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	92.42
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	92.38
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	92.31
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	92.12
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	92.1
3r8r_A	212	Transaldolase; pentose phosphate pathway, schiff b	92.08
2pcq_A	283	Putative dihydrodipicolinate synthase; lyase, lysi	92.04
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	91.98
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	91.98
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	91.98
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	91.9
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	91.74
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	91.72
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	91.72
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	91.7
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	91.59
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	91.56
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	91.55
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	91.47
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	91.46
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	91.42
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	91.4
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	91.28
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	91.28
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	91.2
3s1x_A	223	Probable transaldolase; alpha-beta barrel, conform	91.17
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	91.12
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	91.06
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	90.95
3tcs_A	388	Racemase, putative; PSI-biology, nysgrc, structura	90.8
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	90.79
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	90.76
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	90.72
3tml_A	288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	90.64
3hjz_A	334	Transaldolase B; parachlorococcus, marine, cyanoba	90.63
4e4f_A	426	Mannonate dehydratase; magnesium binding, enzyme f	90.62
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	90.61
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	90.56
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	90.49
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	90.19
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	90.07
3fcp_A	381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	89.79
3r0u_A	379	Enzyme of enolase superfamily; structural genomics	89.39
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	89.38
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	89.28
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	88.98
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	88.93
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	88.85
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	88.78
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	88.77
3dgb_A	382	Muconate cycloisomerase; muconate lactonizing enzy	88.76
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	88.4
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	88.36
2nwr_A	267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	88.31
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	88.3
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	88.25
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	88.21
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	88.18
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	88.0
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	87.84
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	87.74
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	87.59
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	87.48
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	87.08
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	87.03
3tkf_A	345	Transaldolase; structural genomics, center for str	87.03
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	86.9
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	86.7
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	86.67
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	86.67
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	86.66
4dye_A	398	Isomerase; enolase family protein, EFI, enzym func	86.66
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	86.52
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	86.45
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	86.44
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	86.39
2i14_A	395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	86.36
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	86.36
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	86.35
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	86.34
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	86.11
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	86.02
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	85.93
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	85.93
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	85.89
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	85.78
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	85.59
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	85.57
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	85.5
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	85.35
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	85.08
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	84.99
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	84.94
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	84.77
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	84.52
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	84.44
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	84.36
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	84.21
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	84.2
3cq0_A	339	Putative transaldolase YGR043C; alpha/beta barrel,	84.17
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	84.16
3m16_A	329	Transaldolase; dimer, molecular replac swiss-model	84.07
1u83_A	276	Phosphosulfolactate synthase; structural genomics,	83.92
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	83.65
3fv9_G	386	Mandelate racemase/muconate lactonizing enzyme; st	83.64
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	83.61
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	83.38
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	83.25
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	83.25
4f3h_A	250	Fimxeal, putative uncharacterized protein; fimxeal	83.13
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	83.12
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	83.11
3s83_A	259	Ggdef family protein; structural genomics, PSI-bio	83.04
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	83.03
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	82.99
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	82.49
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	81.97
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	81.95
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	81.66
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	81.36
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	81.32
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	81.24
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	81.2
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	81.12
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	80.77
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	80.16
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	80.11

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=100.00  E-value=1.9e-32  Score=240.44  Aligned_cols=182  Identities=17%  Similarity=0.306  Sum_probs=154.9

Q ss_pred             cCCcceecccCCCccccc-----CCCC-------cchhHHHhhhccCccc-cH-HHHHHHHHhcCCCEEEEec---cCHH
Q psy16780         14 VLSQYLLANFSGKLSQLS-----NTSD-------SSSLLAYITSQLDETI-NW-SDVTWLKTITKLPIVLKGI---LTAE   76 (202)
Q Consensus        14 ~p~~~~~~n~~~~~~~~~-----~~~~-------~~~~~~~~~~~~d~~~-~~-~~i~~i~~~~~~Pv~vK~~---~~~~   76 (202)
                      .|++++++|+++....+.     +++.       -+.+||.+|+++|+++ .| +.|+++++.+++||++|++   .+++
T Consensus       142 ~P~~~~ianig~~~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e  221 (365)
T 3sr7_A          142 RPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVK  221 (365)
T ss_dssp             ---CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHH
T ss_pred             CCCCcEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHH
Confidence            499999999998654432     2333       3556899999999999 56 7999999999999999988   7999


Q ss_pred             HHHHHHHcCCcEEEeeccCcCCC---------------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC
Q psy16780         77 DAKIGVEMGASAIMVSNHGGRQL---------------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG  141 (202)
Q Consensus        77 ~a~~l~~aG~d~I~v~~~gg~~~---------------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G  141 (202)
                      +++.+.++|+|+|+|+|+||+++               +++.|+...+.++ +.+..++|||++|||+++.|++|++++|
T Consensus       222 ~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v-~~~~~~ipvia~GGI~~g~Dv~KaLalG  300 (365)
T 3sr7_A          222 TIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA-QPLMDKVEILASGGIRHPLDIIKALVLG  300 (365)
T ss_dssp             HHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHH-GGGTTTSEEEECSSCCSHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHH-HHhcCCCeEEEeCCCCCHHHHHHHHHcC
Confidence            99999999999999999998864               5677888888876 3455589999999999999999999999


Q ss_pred             CCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        142 AKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       142 Ad~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                      ||+|++||+|++++.+.|++++.++++.+++||+.+|.++|+++++||++.+++.
T Consensus       301 AdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~si~eL~~~~~~~  355 (365)
T 3sr7_A          301 AKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVDYLL  355 (365)
T ss_dssp             CSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCSSTGGGGGCCEEE
T ss_pred             CCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccCCEEE
Confidence            9999999999998888999999999999999999999999999999999987663

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=100.00  E-value=5.4e-32  Score=236.15  Aligned_cols=154  Identities=54%  Similarity=0.933  Sum_probs=146.3

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      ...||.++|+.|+++++.+++||++|++.+.++++.+.++|+|+|+++||||+++++++++++.+.++++.+.+++|||+
T Consensus       198 ~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia  277 (352)
T 3sgz_A          198 LFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYM  277 (352)
T ss_dssp             -CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEE
T ss_pred             hccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEE
Confidence            66799999999999999999999999999999999999999999999999999999999999999999988877899999


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccccccccC
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYYSK  202 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~~~~~  202 (202)
                      +|||+++.|++|++++|||+|++||+|++++.+.|++++.++++.+++||+.+|..+|+++++||++..++    |||
T Consensus       278 ~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~----y~k  351 (352)
T 3sgz_A          278 DGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ----FSR  351 (352)
T ss_dssp             ESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBS----SCC
T ss_pred             ECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhcch----hcc
Confidence            99999999999999999999999999999988889999999999999999999999999999999998874    665

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.97  E-value=4.2e-31  Score=232.44  Aligned_cols=159  Identities=38%  Similarity=0.595  Sum_probs=148.7

Q ss_pred             HHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        41 ~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      .++++++|+.++|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||++.++++++++.+.++++.+++++
T Consensus       206 ~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~i  285 (368)
T 2nli_A          206 NNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRV  285 (368)
T ss_dssp             ---CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSS
T ss_pred             HhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCC
Confidence            34566779999999999999999999999999999999999999999999999999999999999999999998887789


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccccccc
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY  199 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~~  199 (202)
                      |||++|||+++.|++|++++|||+|++||+|++++.+.|.+++.++++.+++||+.+|.++|+.++++|++..+++..|
T Consensus       286 pVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~  364 (368)
T 2nli_A          286 PIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNPY  364 (368)
T ss_dssp             CEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHTCCEEECTT
T ss_pred             eEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccccEeeccc
Confidence            9999999999999999999999999999999999888899999999999999999999999999999999998877665

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=99.97  E-value=6.8e-31  Score=232.78  Aligned_cols=162  Identities=56%  Similarity=0.956  Sum_probs=147.5

Q ss_pred             hHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         39 LLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        39 ~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +..++++++||++.|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||++.++++++++.+.++++.+++
T Consensus       227 ~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~  306 (392)
T 2nzl_A          227 LAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEG  306 (392)
T ss_dssp             HHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCC
Confidence            34567778899999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccccc
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET  198 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~  198 (202)
                      ++|||++|||+++.|++|++++|||+|++||+|++++.+.|.+++.++++.+++||+.+|.++|+.+++||++..++..+
T Consensus       307 ~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~~g~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~~  386 (392)
T 2nzl_A          307 KVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNP  386 (392)
T ss_dssp             SSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC---
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhCc
Confidence            89999999999999999999999999999999999988889999999999999999999999999999999999988776


Q ss_pred             cc
Q psy16780        199 YY  200 (202)
Q Consensus       199 ~~  200 (202)
                      |.
T Consensus       387 ~~  388 (392)
T 2nzl_A          387 LA  388 (392)
T ss_dssp             --
T ss_pred             ch
Confidence            64

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=99.97  E-value=2.1e-29  Score=221.47  Aligned_cols=182  Identities=21%  Similarity=0.295  Sum_probs=157.3

Q ss_pred             ccCCcceecccCCCcccc-----c-----CCCC-------cchhHHHhhhccCcccc---HHHHHHHHHhcCCCEEEEec
Q psy16780         13 LVLSQYLLANFSGKLSQL-----S-----NTSD-------SSSLLAYITSQLDETIN---WSDVTWLKTITKLPIVLKGI   72 (202)
Q Consensus        13 ~~p~~~~~~n~~~~~~~~-----~-----~~~~-------~~~~~~~~~~~~d~~~~---~~~i~~i~~~~~~Pv~vK~~   72 (202)
                      .+|+.++++|+++.+...     .     ++++       -+.+|+.+++++++++.   ++.|+++++.+++||++|++
T Consensus       116 ~ap~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~v  195 (368)
T 3vkj_A          116 VAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKES  195 (368)
T ss_dssp             HCSSSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECS
T ss_pred             hCcCcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeC
Confidence            489999999999854322     1     2233       34568899999999884   78999999999999999987


Q ss_pred             ---cCHHHHHHHHHcCCcEEEeeccCcC---------C--------------CCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         73 ---LTAEDAKIGVEMGASAIMVSNHGGR---------Q--------------LDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        73 ---~~~~~a~~l~~aG~d~I~v~~~gg~---------~--------------~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                         .++++|+.+.++|+|+|+|+|+||+         +              .+++.|+..++.++++.++ ++|||++|
T Consensus       196 G~g~s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~-~ipvia~G  274 (368)
T 3vkj_A          196 GNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSG  274 (368)
T ss_dssp             SSCCCHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST-TCEEEEES
T ss_pred             CCCCCHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC-CCcEEEEC
Confidence               7999999999999999999999884         2              1236778888889888774 69999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                      ||+++.|++|++++|||+|++||+|++++. .|++++.++++.+.+||+.+|..+|+++++||++.+++.
T Consensus       275 GI~~~~d~~kal~lGA~~v~ig~~~l~~~~-~G~~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~~l~~  343 (368)
T 3vkj_A          275 GIRSGLDAAKAIALGADIAGMALPVLKSAI-EGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVI  343 (368)
T ss_dssp             SCCSHHHHHHHHHHTCSEEEECHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEEEcHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCCEEe
Confidence            999999999999999999999999998754 689999999999999999999999999999999887663

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.96  E-value=8.3e-29  Score=217.93  Aligned_cols=160  Identities=55%  Similarity=0.970  Sum_probs=149.9

Q ss_pred             hHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         39 LLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        39 ~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +.+++++.+||.+.|+.++++++.+++||++|++.++++++.+.++|+|+|+|+||+|++.++++++++.+.++++.+++
T Consensus       200 ~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~  279 (370)
T 1gox_A          200 LSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQG  279 (370)
T ss_dssp             HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCC
Confidence            34578889999999999999999999999999999999999999999999999999999888888999999999988877


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccccc
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET  198 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~  198 (202)
                      ++|||++|||+++.|+.|++++|||+|++||+|++++.+.|.+++.++++.+.+||+.+|.++|+.+++||++..+++..
T Consensus       280 ~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~~  359 (370)
T 1gox_A          280 RIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADW  359 (370)
T ss_dssp             SSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETT
T ss_pred             CCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcceeccc
Confidence            89999999999999999999999999999999999887888999999999999999999999999999999999876543

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.96  E-value=5.1e-29  Score=227.30  Aligned_cols=160  Identities=43%  Similarity=0.706  Sum_probs=147.3

Q ss_pred             HHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh----
Q psy16780         41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV----  116 (202)
Q Consensus        41 ~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----  116 (202)
                      .++....||.++|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||++++..+++++.+.++++.+    
T Consensus       320 ~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~  399 (511)
T 1kbi_A          320 RALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRN  399 (511)
T ss_dssp             GGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             HHHhhccChHhHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhc
Confidence            3445567899999999999999999999999999999999999999999999999999988888999999998877    


Q ss_pred             -CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        117 -GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       117 -~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                       ..++|||++|||+++.|++|++++|||+|+|||+|++++.+.|.+++.++++.+++||+.+|.++|+.++++|++..+.
T Consensus       400 ~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~  479 (511)
T 1kbi_A          400 LKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLD  479 (511)
T ss_dssp             CBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEE
T ss_pred             cCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHHHhh
Confidence             3479999999999999999999999999999999999988889999999999999999999999999999999999877


Q ss_pred             ccccc
Q psy16780        196 HETYY  200 (202)
Q Consensus       196 ~~~~~  200 (202)
                      +..+.
T Consensus       480 ~~~~~  484 (511)
T 1kbi_A          480 LSTLK  484 (511)
T ss_dssp             CTTTT
T ss_pred             hhhhh
Confidence            65543

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.96  E-value=6.9e-28  Score=212.76  Aligned_cols=158  Identities=37%  Similarity=0.684  Sum_probs=146.6

Q ss_pred             chhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         37 SSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        37 ~~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      +++..+.+...||++.|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||++.++++++++.+.++++.+
T Consensus       198 ~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~  277 (380)
T 1p4c_A          198 EMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT  277 (380)
T ss_dssp             TTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH
T ss_pred             hHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc
Confidence            44555666677999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                        ++|||++|||+++.|+.|++++|||+|++||+|++++.+.|.+++.++++.+.++|+.+|.++|+.++++|++..++.
T Consensus       278 --~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~  355 (380)
T 1p4c_A          278 --GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN  355 (380)
T ss_dssp             --CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEE
T ss_pred             --CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCeEEe
Confidence              569999999999999999999999999999999998777889999999999999999999999999999999997653

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.95  E-value=2.7e-27  Score=205.33  Aligned_cols=184  Identities=22%  Similarity=0.252  Sum_probs=152.0

Q ss_pred             hhhhhccccccCCcceecccCCCccc----cc-----CC-------CCcchhHHHhhhccCccc--cHHHHHHHHHhcCC
Q psy16780          4 YWMKSSLVCLVLSQYLLANFSGKLSQ----LS-----NT-------SDSSSLLAYITSQLDETI--NWSDVTWLKTITKL   65 (202)
Q Consensus         4 ~~~~~~~~~~~p~~~~~~n~~~~~~~----~~-----~~-------~~~~~~~~~~~~~~d~~~--~~~~i~~i~~~~~~   65 (202)
                      .|..  ++-..|+.+.++|++..+..    +.     ++       ++.+..++.++ .+++++  .++.++++++ +++
T Consensus       107 ~~~q--l~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~~~~~~~-~~~~~~~~~~~~i~~vr~-~~~  182 (332)
T 1vcf_A          107 RSFR--VRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ-RGDTDFRGLVERLAELLP-LPF  182 (332)
T ss_dssp             HHHC--CTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHT-TSCCCCTTHHHHHHHHCS-CSS
T ss_pred             ceEE--eeccCCCceeecccChhhhhccChHHHHHHHhhcCCCceeeccchHHHHhc-CCCccHHHHHHHHHHHHc-CCC
Confidence            4543  33345788888888854321    11     11       22233456666 666665  4899999999 999


Q ss_pred             CEEEEec---cCHHHHHHHHHcCCcEEEeeccCc---------CC---------CCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         66 PIVLKGI---LTAEDAKIGVEMGASAIMVSNHGG---------RQ---------LDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        66 Pv~vK~~---~~~~~a~~l~~aG~d~I~v~~~gg---------~~---------~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      ||++|++   .++++++.+.++|+|+|+++||||         ++         .++++++++.+.++++.++ ++|||+
T Consensus       183 Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~-~ipvia  261 (332)
T 1vcf_A          183 PVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP-HLPLVA  261 (332)
T ss_dssp             CEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS-SSCEEE
T ss_pred             CEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC-CCeEEE
Confidence            9999987   899999999999999999999987         43         5677889999999988774 699999


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                      +|||+++.|+.|++++|||+|++||+|++.+ +.|++++.++++.+++||+.+|.++|+++++||++..
T Consensus       262 ~GGI~~~~d~~kal~~GAd~V~igr~~l~~~-~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~  329 (332)
T 1vcf_A          262 SGGVYTGTDGAKALALGADLLAVARPLLRPA-LEGAERVAAWIGDYLEELRTALFAIGARNPKEARGRV  329 (332)
T ss_dssp             ESSCCSHHHHHHHHHHTCSEEEECGGGHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCE
T ss_pred             ECCCCCHHHHHHHHHhCCChHhhhHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence            9999999999999999999999999999987 7899999999999999999999999999999998763

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.94  E-value=5.1e-26  Score=198.35  Aligned_cols=182  Identities=19%  Similarity=0.323  Sum_probs=142.2

Q ss_pred             cCCcceecccCCCccccc-----CCCCc-------chhHHHhhhccCccc--cHHHHHHHHHhcCCCEEEEec---cCHH
Q psy16780         14 VLSQYLLANFSGKLSQLS-----NTSDS-------SSLLAYITSQLDETI--NWSDVTWLKTITKLPIVLKGI---LTAE   76 (202)
Q Consensus        14 ~p~~~~~~n~~~~~~~~~-----~~~~~-------~~~~~~~~~~~d~~~--~~~~i~~i~~~~~~Pv~vK~~---~~~~   76 (202)
                      .|+.++++|++.....+.     +...+       +..++.+++++++++  .++.++++++.+++||++|++   .+++
T Consensus       114 ~~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~  193 (349)
T 1p0k_A          114 NPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKA  193 (349)
T ss_dssp             CSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHH
T ss_pred             CCCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHH
Confidence            577888888874322211     11112       223445667788887  578999999999999999986   7899


Q ss_pred             HHHHHHHcCCcEEEeeccCcC---------C-------CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         77 DAKIGVEMGASAIMVSNHGGR---------Q-------LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        77 ~a~~l~~aG~d~I~v~~~gg~---------~-------~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      +++.+.++|+|+|+++||||+         +       .++++++++.+.++++.+ +++|||++|||++++|+.|++++
T Consensus       194 ~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~  272 (349)
T 1p0k_A          194 SAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIAL  272 (349)
T ss_dssp             HHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHc
Confidence            999999999999999999873         2       356678888899888776 57999999999999999999999


Q ss_pred             CCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        141 GAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                      |||+|++||+|++...+.|++++.++++.+.++|+.+|.++|+.+++|+++.+++.
T Consensus       273 GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~~l~~~m~~~G~~~i~el~~~~~~~  328 (349)
T 1p0k_A          273 GASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVI  328 (349)
T ss_dssp             TCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEE
T ss_pred             CCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhCCeec
Confidence            99999999999998767788899999999999999999999999999999987764

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=99.92  E-value=3.5e-25  Score=192.45  Aligned_cols=149  Identities=23%  Similarity=0.264  Sum_probs=123.1

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeeccCcCCCC------Cccc--hHHHHHHHHHHhC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNHGGRQLD------YVPA--SIEALPEIAKAVG  117 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~gg~~~~------~~~~--~~~~l~~i~~~~~  117 (202)
                      +++...++.|+++++.++.|+++|. +.++++++.+.++|+|+|+++||+|++.+      .+.+  ++..+.++++.+ 
T Consensus       131 G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~-  209 (336)
T 1ypf_A          131 GHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-  209 (336)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTC-
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHc-
Confidence            5777889999999999976666677 78999999999999999999999988653      2334  678899998877 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHhhhcChHHH--------------
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL--------------------WGLAHSGKSGV--------------  163 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l--------------------~~~~~~G~~~v--------------  163 (202)
                       ++|||++|||+++.|++|++++|||+|++||+|+                    +++.+.|.+++              
T Consensus       210 -~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~~~~g~~~~~~g~~~~~~~~  288 (336)
T 1ypf_A          210 -SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEKKNVEGKKMFVEHK  288 (336)
T ss_dssp             -SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC-----------------------CTTSCCSSSSCC
T ss_pred             -CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccchhhccCccccccceeeeccc
Confidence             8999999999999999999999999999999999                    66665555544              


Q ss_pred             ---HHHHHHHHHHHHHHHHHhCCCCHHhhhhcccccc
Q psy16780        164 ---RKVLDILINEFDQALALSGCTSVGEIQREMVVHE  197 (202)
Q Consensus       164 ---~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~  197 (202)
                         .++++.++.||+..|.++|+.+++||++.+++..
T Consensus       289 g~~~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~~~  325 (336)
T 1ypf_A          289 GSLEDTLIEMEQDLQSSISYAGGTKLDSIRTVDYVVV  325 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTSSBGGGGGGCCEEEC
T ss_pred             ccHHHHHHHHHHHHHHHHHHhCcccHHHhCcCCEEEE
Confidence               4899999999999999999999999998866654

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=99.90  E-value=9.7e-24  Score=184.48  Aligned_cols=148  Identities=21%  Similarity=0.194  Sum_probs=123.8

Q ss_pred             cCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC-----CCC-CccchHHHHHHHHHHhC-C
Q psy16780         47 LDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR-----QLD-YVPASIEALPEIAKAVG-H  118 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~-----~~~-~~~~~~~~l~~i~~~~~-~  118 (202)
                      +++...++.|+++|+.+ ++||++|.+.++++++.+.++|+|+|++++++|.     +.+ .+.|++..+.++.+.++ .
T Consensus       143 g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~  222 (351)
T 2c6q_A          143 GYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGL  222 (351)
T ss_dssp             TTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhc
Confidence            56667889999999999 8999999999999999999999999999876653     122 24567777777765542 2


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HhhhcC--------------hHH--
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW--------------------GLAHSG--------------KSG--  162 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~--------------------~~~~~G--------------~~~--  162 (202)
                      ++|||++|||+++.|++|++++|||+|++||+|+.                    ++...|              +++  
T Consensus       223 ~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~~~g~~~~~a~~~~~g~~~~~~~~~g~~  302 (351)
T 2c6q_A          223 KGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKT  302 (351)
T ss_dssp             TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEEEECTTBHHHHHHHSSSCCTTCCCCBCE
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeeeccccccHhhhhcccccccccccccceE
Confidence            69999999999999999999999999999999983                    332211              356  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780        163 --------VRKVLDILINEFDQALALSGCTSVGEIQREMV  194 (202)
Q Consensus       163 --------v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~  194 (202)
                              +.++++.|+.||+..|.++|+.+++||++...
T Consensus       303 ~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~~~  342 (351)
T 2c6q_A          303 VEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTT  342 (351)
T ss_dssp             EEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHHCC
T ss_pred             EEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhCCc
Confidence                    99999999999999999999999999988733

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.87  E-value=3e-22  Score=177.10  Aligned_cols=150  Identities=21%  Similarity=0.267  Sum_probs=116.9

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeec--cCcCCCCC-ccchHHHHHHHHHH-------h
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSN--HGGRQLDY-VPASIEALPEIAKA-------V  116 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~--~gg~~~~~-~~~~~~~l~~i~~~-------~  116 (202)
                      +++...|+.|+++++.+++||++|.+.++++++.+.++|+|+|++++  +++++.++ +++++..+.++++.       +
T Consensus       194 ~~~~~~~~~i~~l~~~~~~pvi~ggi~t~e~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~  273 (393)
T 2qr6_A          194 VNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDET  273 (393)
T ss_dssp             CCC-----CHHHHHHHCSSCEEEECCCSHHHHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHhcCCCEEECCcCCHHHHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhc
Confidence            34555778899999999999999999999999999999999999965  33343333 57888888888776       5


Q ss_pred             CCC-cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH-----------hhhcCh---H--------------HHHHHH
Q psy16780        117 GHK-VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG-----------LAHSGK---S--------------GVRKVL  167 (202)
Q Consensus       117 ~~~-ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~-----------~~~~G~---~--------------~v~~~i  167 (202)
                      +.+ +|||++|||+++.|+.|++++|||+|++||+|+..           +.+.|.   +              .+.+++
T Consensus       274 ~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~es~~~~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~  353 (393)
T 2qr6_A          274 GGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQIL  353 (393)
T ss_dssp             TSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTTCTTTTEECCGGGGCSSSCCCCCEECC----CCCCHHHHH
T ss_pred             CCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCCCCCceEEEecccCcccCCCccccccccccccchhHHHHh
Confidence            433 99999999999999999999999999999998643           222211   1              233333


Q ss_pred             ----------HHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        168 ----------DILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       168 ----------~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                                +.|+.||+..|.++|+++++||++.+++.
T Consensus       354 ~g~~~~~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~~  392 (393)
T 2qr6_A          354 HGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKVSLHV  392 (393)
T ss_dssp             HCCCSCTTSSSCHHHHHHHHHHHHTCSBHHHHTTCCEEE
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCCCCHHHHhhccEec
Confidence                      36789999999999999999999987764

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=99.85  E-value=2e-20  Score=165.94  Aligned_cols=151  Identities=22%  Similarity=0.299  Sum_probs=122.1

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~  117 (202)
                      ..++|+..++.++++++.+ ++||+++.+.+.++++.+.++|+|+|+++.++|+.      ...+.+++..+.++++.+.
T Consensus       174 ~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~  253 (404)
T 1eep_A          174 AHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACN  253 (404)
T ss_dssp             SCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHh
Confidence            4578888999999999999 89999998899999999999999999995544431      1123456777777776553


Q ss_pred             -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hh--------------------
Q psy16780        118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LA--------------------  156 (202)
Q Consensus       118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~--------------------  156 (202)
                       .++|||++|||+++.|+.+++++|||+|++||+|+..                    +.                    
T Consensus       254 ~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~~~g~~~~g~~~~~~~g~~~~  333 (404)
T 1eep_A          254 NTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNE  333 (404)
T ss_dssp             TSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC-------------------------
T ss_pred             hcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCCCCCHHHHhhccccchhcccccc
Confidence             3799999999999999999999999999999999632                    11                    


Q ss_pred             -----hcChHH-------HHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        157 -----HSGKSG-------VRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       157 -----~~G~~~-------v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                           .+|.++       +.++++.+..+|+..|.++|+.+++||++..+.
T Consensus       334 ~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~~~~  384 (404)
T 1eep_A          334 PKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKF  384 (404)
T ss_dssp             -----------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCE
T ss_pred             cccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCcE
Confidence                 123333       889999999999999999999999999988544

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.83  E-value=8e-20  Score=180.57  Aligned_cols=153  Identities=23%  Similarity=0.251  Sum_probs=127.2

Q ss_pred             hhhccCccc-----cHHHHHHHHHhc-CCCEEEEecc---CHHHHHHHHHcCCcEEEeecc-CcCCC-------CCccch
Q psy16780         43 ITSQLDETI-----NWSDVTWLKTIT-KLPIVLKGIL---TAEDAKIGVEMGASAIMVSNH-GGRQL-------DYVPAS  105 (202)
Q Consensus        43 ~~~~~d~~~-----~~~~i~~i~~~~-~~Pv~vK~~~---~~~~a~~l~~aG~d~I~v~~~-gg~~~-------~~~~~~  105 (202)
                      +++..++++     ..+.|+++|+.+ ++||++|++.   ..+.|+.+.++|||+|+++|+ ||+..       +++.|+
T Consensus       966 isP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt 1045 (1479)
T 1ea0_A          966 ISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPW 1045 (1479)
T ss_dssp             ECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCH
T ss_pred             cCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhH
Confidence            455555555     246789999988 8999999985   367889999999999999998 44431       345677


Q ss_pred             HHHHHHHHHHh-----CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh-----------------------
Q psy16780        106 IEALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH-----------------------  157 (202)
Q Consensus       106 ~~~l~~i~~~~-----~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~-----------------------  157 (202)
                      ...|+++++.+     +.++|||++|||+++.|++|++++||++|++||+|+.++.|                       
T Consensus      1046 ~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~ 1125 (1479)
T 1ea0_A         1046 EMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLR 1125 (1479)
T ss_dssp             HHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGG
T ss_pred             HHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHH
Confidence            78888887764     34799999999999999999999999999999999987643                       


Q ss_pred             ----cChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc-ccc
Q psy16780        158 ----SGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE-MVV  195 (202)
Q Consensus       158 ----~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~-~~~  195 (202)
                          .++++|.++++.+.+||+.+|..+|+++++||++. +++
T Consensus      1126 ~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~g~~~ll 1168 (1479)
T 1ea0_A         1126 QKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTDLL 1168 (1479)
T ss_dssp             GSCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCSGGGTTCGGGE
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCchhee
Confidence                25789999999999999999999999999999554 554

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=99.83  E-value=6.8e-20  Score=181.41  Aligned_cols=155  Identities=21%  Similarity=0.186  Sum_probs=128.2

Q ss_pred             HhhhccCccc-----cHHHHHHHHHhc-CCCEEEEecc---CHHHHHHHHHcCCcEEEeeccC-cCCC-------CCccc
Q psy16780         42 YITSQLDETI-----NWSDVTWLKTIT-KLPIVLKGIL---TAEDAKIGVEMGASAIMVSNHG-GRQL-------DYVPA  104 (202)
Q Consensus        42 ~~~~~~d~~~-----~~~~i~~i~~~~-~~Pv~vK~~~---~~~~a~~l~~aG~d~I~v~~~g-g~~~-------~~~~~  104 (202)
                      .+++..++++     ..+.|+++|+.+ ++||++|++.   ..+.|+.+.++|||+|+++|++ |+..       +++.|
T Consensus      1000 lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlP 1079 (1520)
T 1ofd_A         1000 LISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSP 1079 (1520)
T ss_dssp             EECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCC
T ss_pred             eeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchh
Confidence            3456666666     246899999988 8999999985   3678899999999999999984 4431       34567


Q ss_pred             hHHHHHHHHHHh-----CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh----------------------
Q psy16780        105 SIEALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH----------------------  157 (202)
Q Consensus       105 ~~~~l~~i~~~~-----~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~----------------------  157 (202)
                      +...|+++++.+     +.++|||++|||+++.|++|++++||++|++||+|+.++.|                      
T Consensus      1080 t~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~~~r~Ch~~~CP~Gvatqdp~L 1159 (1520)
T 1ofd_A         1080 WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERL 1159 (1520)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHHHHHhccCCCCCceeEeeCHHH
Confidence            778888887764     34799999999999999999999999999999999987643                      


Q ss_pred             -----cChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh-hccccc
Q psy16780        158 -----SGKSGVRKVLDILINEFDQALALSGCTSVGEIQ-REMVVH  196 (202)
Q Consensus       158 -----~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~-~~~~~~  196 (202)
                           .++++|.++++.+.+||+.+|..+|+++++||+ +.+++.
T Consensus      1160 ~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr~dll~ 1204 (1520)
T 1ofd_A         1160 RQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLK 1204 (1520)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGGEE
T ss_pred             HhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCcceEEe
Confidence                 267899999999999999999999999999996 445543

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=99.83  E-value=4.7e-20  Score=161.37  Aligned_cols=144  Identities=21%  Similarity=0.316  Sum_probs=118.0

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC------CccchHHHHHHHHHHhCC
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD------YVPASIEALPEIAKAVGH  118 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~------~~~~~~~~l~~i~~~~~~  118 (202)
                      .+.+...++.|+++|+.+ ++||++|.+.++++++.+.++|+|+|.|++++|+..+      .+.|++..+.++++.+  
T Consensus       122 ~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~--  199 (361)
T 3r2g_A          122 HAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRAD--  199 (361)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSS--
T ss_pred             CCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhC--
Confidence            345666789999999987 7999999999999999999999999999888775432      2345666777765543  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh-------h-------------------------------cCh
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA-------H-------------------------------SGK  160 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~-------~-------------------------------~G~  160 (202)
                      . |||++|||+++.|+.|++++|||+|++||+|+....       .                               +|.
T Consensus       200 ~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~~~~~~~~eG~  278 (361)
T 3r2g_A          200 R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMHEWKTAEGV  278 (361)
T ss_dssp             S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTCCSTTCCSCCC
T ss_pred             C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhccccccccCCcc
Confidence            2 999999999999999999999999999999874310       0                               010


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        161 -------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       161 -------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                             -.+.+++.++..+|+..|.++|+.+|+||+++
T Consensus       279 ~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~~  317 (361)
T 3r2g_A          279 ATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRK  317 (361)
T ss_dssp             CEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHT
T ss_pred             eeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhC
Confidence                   13789999999999999999999999999665

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.82  E-value=3.4e-20  Score=168.84  Aligned_cols=151  Identities=17%  Similarity=0.267  Sum_probs=122.2

Q ss_pred             hccCccccHHHHHHHHHhc-C-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC-----CC-CCccchHHHHHHHHHHh
Q psy16780         45 SQLDETINWSDVTWLKTIT-K-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR-----QL-DYVPASIEALPEIAKAV  116 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~-----~~-~~~~~~~~~l~~i~~~~  116 (202)
                      ..+++...++.++++++.+ + +||+++.+.+.+.++.+.++|+|++.++.++|.     .. ..+.|+..++.++.+.+
T Consensus       263 ~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~  342 (503)
T 1me8_A          263 SDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAER  342 (503)
T ss_dssp             SCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHH
T ss_pred             ccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHH
Confidence            3466777788899999987 5 999999999999999999999999999544432     12 23567888888876654


Q ss_pred             CC-------CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh------------
Q psy16780        117 GH-------KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH------------  157 (202)
Q Consensus       117 ~~-------~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~------------  157 (202)
                      +.       ++|||++|||+++.|++||+++||++|++|++|+..                    +++            
T Consensus       343 ~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~  422 (503)
T 1me8_A          343 NKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLG  422 (503)
T ss_dssp             HHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC------
T ss_pred             HHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccc
Confidence            32       599999999999999999999999999999999731                    111            


Q ss_pred             --------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh-cccc
Q psy16780        158 --------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQR-EMVV  195 (202)
Q Consensus       158 --------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~-~~~~  195 (202)
                              +|.       .++.++++.|..+|+..|.++|+.++++|++ ..++
T Consensus       423 ~~~~~~~~eg~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~  476 (503)
T 1me8_A          423 GKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKIT  476 (503)
T ss_dssp             --------CCCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEE
T ss_pred             cccceecccceeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhCCCEE
Confidence                    111       3578999999999999999999999999987 3443

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.81  E-value=4.2e-19  Score=161.02  Aligned_cols=148  Identities=25%  Similarity=0.369  Sum_probs=121.3

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC-----C-CCccchHHHHHHHHHHhCC
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ-----L-DYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~-----~-~~~~~~~~~l~~i~~~~~~  118 (202)
                      .+++...++.++++++.+ ++||+++.+.+.++++.+.++|+|+|++++++|+.     . ..+.|+...+.++++.++.
T Consensus       259 ~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~  338 (494)
T 1vrd_A          259 HGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARK  338 (494)
T ss_dssp             CCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhh
Confidence            456667899999999998 79999999999999999999999999998776531     1 1245677777777665432


Q ss_pred             -CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------Hhh---------------------
Q psy16780        119 -KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW--------------------GLA---------------------  156 (202)
Q Consensus       119 -~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~--------------------~~~---------------------  156 (202)
                       ++|||++|||+++.|+.|++++|||+|++||+|+.                    ++.                     
T Consensus       339 ~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~  418 (494)
T 1vrd_A          339 YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKF  418 (494)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC---------------------
T ss_pred             cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccc
Confidence             79999999999999999999999999999999973                    111                     


Q ss_pred             -hcChH-------HHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        157 -HSGKS-------GVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       157 -~~G~~-------~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                       .+|.+       .+.++++.+..+|+..|.++|+.++++|++..
T Consensus       419 ~~~g~~~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~  463 (494)
T 1vrd_A          419 VPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA  463 (494)
T ss_dssp             ----CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred             cCCcceEccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhhC
Confidence             12211       27899999999999999999999999998763

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=99.81  E-value=2.8e-19  Score=153.04  Aligned_cols=138  Identities=18%  Similarity=0.225  Sum_probs=112.3

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc--CH----HHHHHHHHcCCcEEEeeccCc--CCCC--------------C---c
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL--TA----EDAKIGVEMGASAIMVSNHGG--RQLD--------------Y---V  102 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~--~~----~~a~~l~~aG~d~I~v~~~gg--~~~~--------------~---~  102 (202)
                      +++..+++++++++.+++||++|+..  +.    +.++.+.++|+|+|+++|+.+  ...+              +   +
T Consensus       142 ~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg  221 (311)
T 1jub_A          142 DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGG  221 (311)
T ss_dssp             CHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEES
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccc
Confidence            67777899999999999999999874  33    337888999999999988641  1111              0   2


Q ss_pred             c----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780        103 P----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL  178 (202)
Q Consensus       103 ~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m  178 (202)
                      +    .+++.+.++++.+++++|||++|||+|++|+.+++++|||+|++||++++    +|+    .+++.+.++++.+|
T Consensus       222 ~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~----~~p----~~~~~i~~~l~~~l  293 (311)
T 1jub_A          222 AYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGP----AIFDRIIKELEEIM  293 (311)
T ss_dssp             GGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCT----HHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh----cCc----HHHHHHHHHHHHHH
Confidence            1    13556777777666689999999999999999999999999999999996    355    57789999999999


Q ss_pred             HHhCCCCHHhhhhcc
Q psy16780        179 ALSGCTSVGEIQREM  193 (202)
Q Consensus       179 ~~~G~~~i~el~~~~  193 (202)
                      ...|+++++|+++..
T Consensus       294 ~~~g~~si~e~~g~~  308 (311)
T 1jub_A          294 NQKGYQSIADFHGKL  308 (311)
T ss_dssp             HHHTCCSGGGTTTCC
T ss_pred             HHcCCCCHHHHhChh
Confidence            999999999999863

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=99.80  E-value=3.2e-19  Score=152.93  Aligned_cols=137  Identities=21%  Similarity=0.221  Sum_probs=112.8

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc--CHHH----HHHHHHcC-CcEEEeeccCcC--CCC-----------------C
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL--TAED----AKIGVEMG-ASAIMVSNHGGR--QLD-----------------Y  101 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~--~~~~----a~~l~~aG-~d~I~v~~~gg~--~~~-----------------~  101 (202)
                      +++...++++++++.+++||++|+..  +.++    ++.+.++| +|+|+++|+.++  ..+                 .
T Consensus       144 ~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~s  223 (314)
T 2e6f_A          144 DFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLG  223 (314)
T ss_dssp             SHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccC
Confidence            66777889999999999999999873  4444    78889999 999999886521  000                 1


Q ss_pred             c----cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q psy16780        102 V----PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA  177 (202)
Q Consensus       102 ~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~  177 (202)
                      +    +..++.+.++++.+ +++|||++|||+|++|+.+++++|||+|++||+++.    +|+    .+++.++++++.+
T Consensus       224 g~~~~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~----~~p----~~~~~i~~~l~~~  294 (314)
T 2e6f_A          224 GKYILPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQE----EGP----GIFTRLEDELLEI  294 (314)
T ss_dssp             SGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHH----HCT----THHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHh----cCc----HHHHHHHHHHHHH
Confidence            1    12356778887777 689999999999999999999999999999999995    355    4778999999999


Q ss_pred             HHHhCCCCHHhhhhcc
Q psy16780        178 LALSGCTSVGEIQREM  193 (202)
Q Consensus       178 m~~~G~~~i~el~~~~  193 (202)
                      |...|+++++|+++..
T Consensus       295 ~~~~g~~~i~~~~g~~  310 (314)
T 2e6f_A          295 MARKGYRTLEEFRGRV  310 (314)
T ss_dssp             HHHHTCCSSTTTTTCC
T ss_pred             HHHcCCCCHHHHhchH
Confidence            9999999999999863

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.80  E-value=3.5e-19  Score=162.36  Aligned_cols=146  Identities=24%  Similarity=0.284  Sum_probs=115.0

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-CC----C-CCccc---hHHHHHHHHH
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-RQ----L-DYVPA---SIEALPEIAK  114 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-~~----~-~~~~~---~~~~l~~i~~  114 (202)
                      ..+++.+.++.++++++.+ ++||++|.+.+.+.++.+.++|+|+|+++.++| ..    . ..+.+   .+..+.++++
T Consensus       276 ~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~  355 (514)
T 1jcn_A          276 SQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYAR  355 (514)
T ss_dssp             SCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHG
T ss_pred             cCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHh
Confidence            4567777889999999998 899999999999999999999999999965533 21    1 12322   3344555555


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------------
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-----------------  157 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-----------------  157 (202)
                      .+  ++|||++|||+++.|+.|++++|||+|++||+|+..                    +..                 
T Consensus       356 ~~--~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~  433 (514)
T 1jcn_A          356 RF--GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSE  433 (514)
T ss_dssp             GG--TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC----------------------------------
T ss_pred             hC--CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhccc
Confidence            55  799999999999999999999999999999988641                    110                 


Q ss_pred             ----cChHHH----------HHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 ----SGKSGV----------RKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 ----~G~~~v----------~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                          .+++++          .++++.|..+|+..|.++|+++++||++.
T Consensus       434 ~~~~~~~~gv~~~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~  482 (514)
T 1jcn_A          434 GDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSM  482 (514)
T ss_dssp             ----------------CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred             cccceecccceecCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhh
Confidence                012443          89999999999999999999999999985

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.80  E-value=3.7e-19  Score=162.31  Aligned_cols=147  Identities=21%  Similarity=0.276  Sum_probs=118.0

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccchHHHHHHHHHHhCC
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~~  118 (202)
                      .+++...++.++++++.+ ++||++|.+.+.+.++.+.++|+|+|.++.++|+..      ..+.|++..+.++++.++.
T Consensus       278 ~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~  357 (511)
T 3usb_A          278 HGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARK  357 (511)
T ss_dssp             CTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHh
Confidence            345666788999999998 489999999999999999999999999965544311      2346778888777665432


Q ss_pred             -CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------------
Q psy16780        119 -KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH--------------------  157 (202)
Q Consensus       119 -~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~--------------------  157 (202)
                       ++|||++|||+++.|+.|++++||++|++||+|+..                    +.+                    
T Consensus       358 ~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~  437 (511)
T 3usb_A          358 HGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKL  437 (511)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC--------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccc
Confidence             699999999999999999999999999999998532                    111                    


Q ss_pred             --cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 --SGKS-------GVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 --~G~~-------~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                        +|.+       .+.++++.|..+|+..|.++|+.++++|+..
T Consensus       438 ~~eG~~~~~~~~~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~  481 (511)
T 3usb_A          438 VPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLREN  481 (511)
T ss_dssp             --------CBCCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred             cCCCcEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence              1222       2778999999999999999999999999875

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=99.79  E-value=9.9e-19  Score=155.29  Aligned_cols=140  Identities=17%  Similarity=0.166  Sum_probs=114.4

Q ss_pred             ccCccccHHHHHHHHHh--------------------cCCC-EEEEecc--C----HHHHHHHHHcCCcEEEeeccCcCC
Q psy16780         46 QLDETINWSDVTWLKTI--------------------TKLP-IVLKGIL--T----AEDAKIGVEMGASAIMVSNHGGRQ   98 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~--------------------~~~P-v~vK~~~--~----~~~a~~l~~aG~d~I~v~~~gg~~   98 (202)
                      ..|++...++++++++.                    .++| |+||+..  +    .+.|+.+.++|+|+|+++|+...+
T Consensus       230 lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r  309 (415)
T 3i65_A          230 NQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI  309 (415)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCC
T ss_pred             ccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Confidence            45777788889988875                    2689 9999984  3    355788999999999999976533


Q ss_pred             CC--------C---cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHH
Q psy16780         99 LD--------Y---VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGV  163 (202)
Q Consensus        99 ~~--------~---~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v  163 (202)
                      .+        +   ++    .+++.++++++.+++++|||++|||+|++|+.+++.+|||+|++||++++    +|+   
T Consensus       310 ~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~----~GP---  382 (415)
T 3i65_A          310 NDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF----NGM---  382 (415)
T ss_dssp             CCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHH----HGG---
T ss_pred             ccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh----cCH---
Confidence            21        1   22    24467888888887789999999999999999999999999999999986    356   


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        164 RKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       164 ~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                       .+++.++++|+.+|...|+.+++|+++..
T Consensus       383 -~~~~~i~~~L~~~l~~~G~~si~e~~G~~  411 (415)
T 3i65_A          383 -KSAVQIKRELNHLLYQRGYYNLKEAIGRK  411 (415)
T ss_dssp             -GHHHHHHHHHHHHHHHTTCSSSTTTTTTT
T ss_pred             -HHHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence             46778999999999999999999999863

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.79  E-value=1.6e-18  Score=157.41  Aligned_cols=147  Identities=24%  Similarity=0.342  Sum_probs=120.2

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC-
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG-  117 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-  117 (202)
                      .+++....+.++++++.+ ++||+++.+.+.+.++.+.++|+|+|.++.++|..      ...+.+++..+.++++.++ 
T Consensus       251 ~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~  330 (490)
T 4avf_A          251 HGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEG  330 (490)
T ss_dssp             CCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTT
T ss_pred             CCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhcc
Confidence            445666788999999998 78999998999999999999999999996544432      1234678888888887763 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------------
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH--------------------  157 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~--------------------  157 (202)
                      .++|||++|||+++.|+.+++++||++|++||+|+..                    +.+                    
T Consensus       331 ~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~  410 (490)
T 4avf_A          331 TGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASA  410 (490)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC--------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhccccc
Confidence            3699999999999999999999999999999988641                    111                    


Q ss_pred             -------cChH-------HHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -------SGKS-------GVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -------~G~~-------~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                             +|.+       .+.+++.+|..+|+..|.++|+.+++||+++
T Consensus       411 ~~~~~~~eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~~  459 (490)
T 4avf_A          411 GAEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQ  459 (490)
T ss_dssp             -------------CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred             ccccccCCCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence                   1111       4669999999999999999999999999876

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=99.79  E-value=2e-18  Score=152.93  Aligned_cols=148  Identities=21%  Similarity=0.298  Sum_probs=118.3

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC-----CC-CCccchHHHHHHHHHHhC-
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR-----QL-DYVPASIEALPEIAKAVG-  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~-----~~-~~~~~~~~~l~~i~~~~~-  117 (202)
                      ..+++....+.|+++++.+++||+++.+.+.+.++.+.++|+|+|+++..+|.     .. ..+.+++..+.++++.++ 
T Consensus       165 a~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~  244 (400)
T 3ffs_A          165 AHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASK  244 (400)
T ss_dssp             SCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTT
T ss_pred             CCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHh
Confidence            45666667889999999889999999999999999999999999999543331     11 124578888888877653 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------cC----
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH--------------SG----  159 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~--------------~G----  159 (202)
                      .++|||++|||+++.|+.+++++||++|++||+|+..                    +.+              ++    
T Consensus       245 ~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~~  324 (400)
T 3ffs_A          245 FGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPEN  324 (400)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTTSSCCEEESSSSEEEC--------------------------
T ss_pred             cCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhhccccccc
Confidence            3799999999999999999999999999999998741                    110              00    


Q ss_pred             ---hH----------HHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        160 ---KS----------GVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       160 ---~~----------~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                         ++          .+.+++.++..+||..|.++|+.+|+||+.+
T Consensus       325 ~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~i~el~~~  370 (400)
T 3ffs_A          325 KMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK  370 (400)
T ss_dssp             ---------CEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             ccCCCCcEEecCCCCCHHHHHHHHHHHHHHhhhhcCcccHHHHHhC
Confidence               11          2678999999999999999999999999865

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=99.78  E-value=4e-18  Score=149.66  Aligned_cols=140  Identities=19%  Similarity=0.175  Sum_probs=113.4

Q ss_pred             ccCccccHHHHHHHHHh-------cCCCEEEEecc--C----HHHHHHHHHcCCcEEEeeccC-cCC---------CCCc
Q psy16780         46 QLDETINWSDVTWLKTI-------TKLPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHG-GRQ---------LDYV  102 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~-------~~~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~g-g~~---------~~~~  102 (202)
                      ..+++...++++++++.       +++||+||++.  +    .+.++.+.++|+|+|+++|+. ++.         ..++
T Consensus       195 l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gG  274 (367)
T 3zwt_A          195 LQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGG  274 (367)
T ss_dssp             GGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSE
T ss_pred             cCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCC
Confidence            34666677788888764       68999999984  3    245788999999999999864 221         1121


Q ss_pred             ---c----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        103 ---P----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       103 ---~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                         +    .+++.++++++.+++++|||++|||+|++|+.+++.+|||+|++||++++    +|+    .+++.+.++|+
T Consensus       275 lSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~----~gP----~~~~~i~~~l~  346 (367)
T 3zwt_A          275 LSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGP----PVVGKVKRELE  346 (367)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCT----HHHHHHHHHHH
T ss_pred             cCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHh----cCc----HHHHHHHHHHH
Confidence               2    24567888888887789999999999999999999999999999999986    366    46788999999


Q ss_pred             HHHHHhCCCCHHhhhhcc
Q psy16780        176 QALALSGCTSVGEIQREM  193 (202)
Q Consensus       176 ~~m~~~G~~~i~el~~~~  193 (202)
                      .+|...|+.+++|+++..
T Consensus       347 ~~m~~~G~~~i~e~~G~~  364 (367)
T 3zwt_A          347 ALLKEQGFGGVTDAIGAD  364 (367)
T ss_dssp             HHHHHTTCSSHHHHTTGG
T ss_pred             HHHHHcCCCCHHHhhCcc
Confidence            999999999999999864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.77  E-value=2.3e-18  Score=156.63  Aligned_cols=146  Identities=23%  Similarity=0.297  Sum_probs=119.5

Q ss_pred             cCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccchHHHHHHHHHHhC-C
Q psy16780         47 LDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPASIEALPEIAKAVG-H  118 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~-~  118 (202)
                      +++....+.++++++.+ ++||+++.+.+.+.++.+.++|+|+|.+++++|...      ..+.+++..+.++++.++ .
T Consensus       254 g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~  333 (496)
T 4fxs_A          254 GHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEY  333 (496)
T ss_dssp             TTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGG
T ss_pred             ccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccC
Confidence            45556778999999998 899999999999999999999999999975444221      234678888888877653 2


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh-----------------------------------------
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH-----------------------------------------  157 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~-----------------------------------------  157 (202)
                      ++|||++|||+++.|+.|++++|||+|++||+|+....+                                         
T Consensus       334 ~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~  413 (496)
T 4fxs_A          334 GIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADK  413 (496)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCC
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhcccccccccccccccc
Confidence            699999999999999999999999999999998742100                                         


Q ss_pred             ---cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 ---SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 ---~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                         +|.       ..+.+++.+|..+|+..|.++|+.+|+||+++
T Consensus       414 ~~~eg~~~~v~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~~  458 (496)
T 4fxs_A          414 LVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK  458 (496)
T ss_dssp             CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred             ccCCccEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence               010       24779999999999999999999999999865

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=99.77  E-value=3.9e-18  Score=149.50  Aligned_cols=148  Identities=21%  Similarity=0.291  Sum_probs=118.2

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC-
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG-  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-  117 (202)
                      ..+++....+.++++++.+++||+++.+.+++.++.+.++|+|+|.++.++|..      ...+.+++..+.++++... 
T Consensus       126 a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~  205 (361)
T 3khj_A          126 AHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASK  205 (361)
T ss_dssp             SCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhh
Confidence            456777778899999998899999999999999999999999999996544421      1223567777777754331 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------cC----
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH--------------SG----  159 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~--------------~G----  159 (202)
                      .++|||++|||+++.|+.+++++|||+|++||+|+..                    +.+              ++    
T Consensus       206 ~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~~~~~~y~~~~~~~~  285 (361)
T 3khj_A          206 FGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPEN  285 (361)
T ss_dssp             HTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC-------------------------
T ss_pred             cCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHhccchhhhhccccccc
Confidence            1799999999999999999999999999999988742                    110              00    


Q ss_pred             ---hH----------HHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        160 ---KS----------GVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       160 ---~~----------~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                         ++          .+.+++.++..+||..|.++|+.+|+||+.+
T Consensus       286 ~~~~eg~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~  331 (361)
T 3khj_A          286 KMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK  331 (361)
T ss_dssp             --------CEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             ccCCCccEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCccHHHHHhC
Confidence               11          2678999999999999999999999999865

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=99.77  E-value=6.7e-18  Score=151.39  Aligned_cols=123  Identities=19%  Similarity=0.217  Sum_probs=100.9

Q ss_pred             cCCC-EEEEecc--CH----HHHHHHHHcCCcEEEeeccCcCCCC--------C---cc----chHHHHHHHHHHhCCCc
Q psy16780         63 TKLP-IVLKGIL--TA----EDAKIGVEMGASAIMVSNHGGRQLD--------Y---VP----ASIEALPEIAKAVGHKV  120 (202)
Q Consensus        63 ~~~P-v~vK~~~--~~----~~a~~l~~aG~d~I~v~~~gg~~~~--------~---~~----~~~~~l~~i~~~~~~~i  120 (202)
                      .++| |++|+..  +.    +.++.+.++|+|+|+++|+.....+        +   ++    ..++.++++++.+++++
T Consensus       295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i  374 (443)
T 1tv5_A          295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI  374 (443)
T ss_dssp             SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence            3689 9999984  33    3488999999999999997543221        1   11    13567788888887789


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                      |||++|||+|++|+.+++++|||+|++||++++    +|+    .+++.++++++.+|...|+++++|+++..
T Consensus       375 PVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~----~gP----~l~~~i~~~l~~~l~~~G~~si~e~~G~~  439 (443)
T 1tv5_A          375 PIIASGGIFSGLDALEKIEAGASVCQLYSCLVF----NGM----KSAVQIKRELNHLLYQRGYYNLKEAIGRK  439 (443)
T ss_dssp             CEEEESSCCSHHHHHHHHHTTEEEEEESHHHHH----HGG----GHHHHHHHHHHHHHHHHTCSSSGGGTTTT
T ss_pred             cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh----cCh----HHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence            999999999999999999999999999999986    245    46788999999999999999999999874

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=99.76  E-value=3e-18  Score=149.78  Aligned_cols=137  Identities=20%  Similarity=0.146  Sum_probs=110.3

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--CHH----HHHHHHHcC-CcEEEeeccCc---------CC-------CCC--
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--TAE----DAKIGVEMG-ASAIMVSNHGG---------RQ-------LDY--  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--~~~----~a~~l~~aG-~d~I~v~~~gg---------~~-------~~~--  101 (202)
                      .||+...++++++++.+++||+||++.  +.+    .++.+.++| +|+|+++|+.+         +.       ..+  
T Consensus       176 ~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGl  255 (354)
T 4ef8_A          176 YDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGL  255 (354)
T ss_dssp             GSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEE
T ss_pred             cCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCC
Confidence            377888899999999999999999984  332    244555888 99999877531         10       011  


Q ss_pred             -c----cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        102 -V----PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       102 -~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                       +    +..++.+.++++. .+++|||++|||+|++|+.+++.+|||+|++||++++    +|+    .+++.+.++|+.
T Consensus       256 SG~~i~p~a~~~i~~v~~~-~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~----~GP----~~~~~i~~~l~~  326 (354)
T 4ef8_A          256 GGRYVLPTALANINAFYRR-CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE----EGP----SIFERLTSELLG  326 (354)
T ss_dssp             EGGGGHHHHHHHHHHHHHH-CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHH----HCT----THHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHh-CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHH----hCH----HHHHHHHHHHHH
Confidence             1    2356678888776 3479999999999999999999999999999999986    366    467889999999


Q ss_pred             HHHHhCCCCHHhhhhc
Q psy16780        177 ALALSGCTSVGEIQRE  192 (202)
Q Consensus       177 ~m~~~G~~~i~el~~~  192 (202)
                      +|...|+.+++|+++.
T Consensus       327 ~m~~~G~~si~el~G~  342 (354)
T 4ef8_A          327 VMAKKRYQTLDEFRGK  342 (354)
T ss_dssp             HHHHHTCCSGGGTTTC
T ss_pred             HHHHcCCCCHHHHHHH
Confidence            9999999999999987

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=99.76  E-value=5.6e-18  Score=147.63  Aligned_cols=138  Identities=14%  Similarity=0.157  Sum_probs=110.6

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--C-HHHHHHHHHcCCcEEEeeccC-----------cC-CC--------CCcc
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--T-AEDAKIGVEMGASAIMVSNHG-----------GR-QL--------DYVP  103 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--~-~~~a~~l~~aG~d~I~v~~~g-----------g~-~~--------~~~~  103 (202)
                      .||+...++++++++.+++||+||+..  + .+.++.+.++|+++|++.+..           .+ ..        .+++
T Consensus       176 ~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~  255 (345)
T 3oix_A          176 YDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGD  255 (345)
T ss_dssp             GCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEG
T ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCc
Confidence            477788889999999999999999984  3 466788888888877644321           11 01        0122


Q ss_pred             c----hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHH
Q psy16780        104 A----SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALA  179 (202)
Q Consensus       104 ~----~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~  179 (202)
                      +    .++.+.++++.+++++|||++|||+|++|+.+++.+|||+|++||+|++    .|+    .+++.+.++|+.+|.
T Consensus       256 ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~----~gP----~~~~~i~~~L~~~l~  327 (345)
T 3oix_A          256 YVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQ----EGP----QIFKRITKELXAIMT  327 (345)
T ss_dssp             GGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCT----HHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHh----cCh----HHHHHHHHHHHHHHH
Confidence            2    3566788877776689999999999999999999999999999999775    366    477899999999999


Q ss_pred             HhCCCCHHhhhhc
Q psy16780        180 LSGCTSVGEIQRE  192 (202)
Q Consensus       180 ~~G~~~i~el~~~  192 (202)
                      ..|+++++|+++.
T Consensus       328 ~~G~~si~e~~G~  340 (345)
T 3oix_A          328 EKGYETLEDFRGK  340 (345)
T ss_dssp             HHTCCSGGGTTTC
T ss_pred             HcCCCCHHHHHhH
Confidence            9999999999986

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=99.74  E-value=1.1e-17  Score=146.89  Aligned_cols=148  Identities=23%  Similarity=0.315  Sum_probs=118.4

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~  117 (202)
                      ..++++...+.|+++++.+ ++||+++.+.+++.++.+.++|+|+|.++..+|...      ..+.+++..+.++++..+
T Consensus       129 a~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~  208 (366)
T 4fo4_A          129 SHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVAN  208 (366)
T ss_dssp             SCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHG
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHh
Confidence            3456666778899999988 899999989999999999999999999953333211      234577788888766432


Q ss_pred             -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-------------------
Q psy16780        118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-------------------  157 (202)
Q Consensus       118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-------------------  157 (202)
                       .++|||++|||+++.|+.+++++|||+|++||+|+..                    +.+                   
T Consensus       209 ~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~~~~ry~~~~~~~  288 (366)
T 4fo4_A          209 EYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAA  288 (366)
T ss_dssp             GGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC-------------
T ss_pred             hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcccccchhcccccc
Confidence             2799999999999999999999999999999998842                    100                   


Q ss_pred             -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                           +|.       -.+.+++.++..+||..|.++|+.+|+||+++
T Consensus       289 ~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~~~~~~~  335 (366)
T 4fo4_A          289 DKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK  335 (366)
T ss_dssp             --CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred             ccccCCCcEEecCCCCCHHHHHHHHHHHHHHhhhccCcccHHHHHhC
Confidence                 010       12779999999999999999999999999875

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=99.74  E-value=3.3e-17  Score=139.65  Aligned_cols=134  Identities=22%  Similarity=0.234  Sum_probs=108.4

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc---C-HHHHHHHHHcCCcEEEeecc-------CcCCC---------CCccc---
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL---T-AEDAKIGVEMGASAIMVSNH-------GGRQL---------DYVPA---  104 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~---~-~~~a~~l~~aG~d~I~v~~~-------gg~~~---------~~~~~---  104 (202)
                      ++++..++++++++.+++||++|+..   + .+.++.+.++|+|+|++++.       ..+..         ..++.   
T Consensus       148 ~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~  227 (311)
T 1ep3_A          148 DPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKP  227 (311)
T ss_dssp             CHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchH
Confidence            66777899999999989999999873   2 56689999999999999763       11110         01222   


Q ss_pred             -hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780        105 -SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGC  183 (202)
Q Consensus       105 -~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~  183 (202)
                       .++.+.++++.+  ++|||++|||++++|+.+++++|||+|++||+|+.     ++    ++++.++++++.+|...|+
T Consensus       228 ~~~~~i~~i~~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~-----~p----~~~~~i~~~l~~~~~~~g~  296 (311)
T 1ep3_A          228 VALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DP----FVCPKIIDKLPELMDQYRI  296 (311)
T ss_dssp             HHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CT----THHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHc-----Cc----HHHHHHHHHHHHHHHHcCC
Confidence             235566666655  79999999999999999999999999999999986     45    3667889999999999999


Q ss_pred             CCHHhhhhc
Q psy16780        184 TSVGEIQRE  192 (202)
Q Consensus       184 ~~i~el~~~  192 (202)
                      ++++|+++.
T Consensus       297 ~~~~~~~g~  305 (311)
T 1ep3_A          297 ESLESLIQE  305 (311)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHhCh
Confidence            999999875

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.74  E-value=1.4e-17  Score=150.77  Aligned_cols=149  Identities=17%  Similarity=0.245  Sum_probs=120.6

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC-----C-CCccchHHHHHHHHHHhC-
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ-----L-DYVPASIEALPEIAKAVG-  117 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~-----~-~~~~~~~~~l~~i~~~~~-  117 (202)
                      .+++...++.++++++.+ ++|++.+.+.+.+.++.+.++|+|+|.+++.+|..     . ..+.++...+.+++.... 
T Consensus       255 ~g~~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~  334 (491)
T 1zfj_A          255 HGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVARE  334 (491)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCcchhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhh
Confidence            356666788999999998 89999999999999999999999999997654431     1 224567777777765432 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hh---------------------
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LA---------------------  156 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~---------------------  156 (202)
                      .++|||++|||+++.|+.|++++||++|++|++|+..                    +.                     
T Consensus       335 ~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~  414 (491)
T 1zfj_A          335 YGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEA  414 (491)
T ss_dssp             TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------
T ss_pred             cCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhccccccccccccccc
Confidence            2799999999999999999999999999999999831                    00                     


Q ss_pred             ----hcCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780        157 ----HSGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQREMV  194 (202)
Q Consensus       157 ----~~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~  194 (202)
                          .+|.       ..+.++++.+..+|+..|.++|+.++.+|+....
T Consensus       415 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~~  463 (491)
T 1zfj_A          415 NKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQ  463 (491)
T ss_dssp             CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCC
T ss_pred             cccCcCcceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhcCc
Confidence                1121       1288999999999999999999999999987633

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.73  E-value=3.5e-17  Score=148.35  Aligned_cols=147  Identities=22%  Similarity=0.301  Sum_probs=120.7

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----C--CCCccchHHHHHHHHHHhCC
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----Q--LDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .++.....+.+++|++.+ ++||++..+.+.+.++.|.++|||+|.|+-.+|.    .  ..-+.|.+.++.++++....
T Consensus       303 hGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~  382 (556)
T 4af0_A          303 QGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASR  382 (556)
T ss_dssp             CCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGG
T ss_pred             ccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHH
Confidence            567778899999999987 7999999999999999999999999999866552    1  12356788888887665432


Q ss_pred             -CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------------
Q psy16780        119 -KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH--------------------  157 (202)
Q Consensus       119 -~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~--------------------  157 (202)
                       .+|||++|||+++.|++|||++|||+||+|+.|.-.                    +.+                    
T Consensus       383 ~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~  462 (556)
T 4af0_A          383 FGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILG  462 (556)
T ss_dssp             GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------C
T ss_pred             cCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCccccccccc
Confidence             699999999999999999999999999999977521                    100                    


Q ss_pred             -------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -------------------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -------------------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                                         +|.       -.+.+++.++..+||..|.++|+.+|+||+.+
T Consensus       463 ~~~~s~dRyfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~  523 (556)
T 4af0_A          463 LDNAATARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSC  523 (556)
T ss_dssp             CSCSSEEECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             ccccchhhhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHh
Confidence                               010       12789999999999999999999999999875

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.72  E-value=1.4e-17  Score=150.90  Aligned_cols=142  Identities=20%  Similarity=0.274  Sum_probs=111.9

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC-------CCccchHHHHHHH---HHHh
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL-------DYVPASIEALPEI---AKAV  116 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~-------~~~~~~~~~l~~i---~~~~  116 (202)
                      |......+.++++++.+++||++|.+.+++.++.+.  |+|+|.+ +.|++..       ..+.++...+.++   ++.+
T Consensus       251 G~~~~~L~~I~~l~~~~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~  327 (486)
T 2cu0_A          251 AHNLKAIKSMKEMRQKVDADFIVGNIANPKAVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEY  327 (486)
T ss_dssp             CCCHHHHHHHHHHHHTCCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHH
T ss_pred             CcEeehhhHHHHHHHHhCCccccCCcCCHHHHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHc
Confidence            444446678899999999999999999999998888  9999999 4433221       2344555555544   3334


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------------hh--------------
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------------LA--------------  156 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------------~~--------------  156 (202)
                        ++|||++|||+++.|++|++++|||+|++|++|+..                          +.              
T Consensus       328 --~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~  405 (486)
T 2cu0_A          328 --GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMK  405 (486)
T ss_dssp             --TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCC
T ss_pred             --CCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhcccccccccccccc
Confidence              699999999999999999999999999999999831                          10              


Q ss_pred             -----hcChH-------HHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        157 -----HSGKS-------GVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       157 -----~~G~~-------~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                           .+|.+       .+.++++.+..+|+..|.++|+.++.+|+...
T Consensus       406 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~~  454 (486)
T 2cu0_A          406 TRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKG  454 (486)
T ss_dssp             CSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHC
T ss_pred             cccccccceEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhhC
Confidence                 12222       18899999999999999999999999998763

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=99.69  E-value=1.9e-16  Score=137.01  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=86.6

Q ss_pred             cCccccHHHHHHHHHhc---------CCCEEEEecc--C----HHHHHHHHHcCCcEEEeeccC-cCC---------CCC
Q psy16780         47 LDETINWSDVTWLKTIT---------KLPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHG-GRQ---------LDY  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~---------~~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~g-g~~---------~~~  101 (202)
                      .++++.+++++++|+.+         ++||++|++.  +    .+.++.+.++|+|+|+++|++ ++.         ..+
T Consensus       185 ~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~g  264 (336)
T 1f76_A          185 QYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTG  264 (336)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSS
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCC
Confidence            35677889999999988         8999999874  3    344789999999999999864 221         011


Q ss_pred             ---cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        102 ---VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       102 ---~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                         ++    .+++.+.++++.+++++|||++|||+|++|+.+++++|||+|++||++++
T Consensus       265 g~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~  323 (336)
T 1f76_A          265 GLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF  323 (336)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred             CcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence               21    23456778888887689999999999999999999999999999999986

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=99.66  E-value=2.1e-16  Score=136.02  Aligned_cols=144  Identities=20%  Similarity=0.183  Sum_probs=112.4

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +.++++.+++++++++.+++||++|++.      +.+.++.+.++|+|+|+|+++...+...++++++.+.++++    +
T Consensus       108 ~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~----~  183 (318)
T 1vhn_A          108 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK----R  183 (318)
T ss_dssp             GSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC----S
T ss_pred             hhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc----C
Confidence            3478899999999999999999999762      23789999999999999965322222234556665555533    8


Q ss_pred             cEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH-----Hhhhc----Ch---HHHHHHHHHHHHHHHHHHHHhCCC-C
Q psy16780        120 VDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW-----GLAHS----GK---SGVRKVLDILINEFDQALALSGCT-S  185 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~-----~~~~~----G~---~~v~~~i~~l~~~L~~~m~~~G~~-~  185 (202)
                      +|||++|||+|++|+.++++ .|||+|++||+++.     .....    |.   .++.+.++.+.++++..|...|.. .
T Consensus       184 ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  263 (318)
T 1vhn_A          184 IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKA  263 (318)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            99999999999999999999 79999999998653     11111    32   467788999999999999999964 6


Q ss_pred             HHhhhhcc
Q psy16780        186 VGEIQREM  193 (202)
Q Consensus       186 i~el~~~~  193 (202)
                      +.++++..
T Consensus       264 ~~~~~~~~  271 (318)
T 1vhn_A          264 VVEMRKFL  271 (318)
T ss_dssp             HHHHHTTH
T ss_pred             HHHHHHHH
Confidence            77887763

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.64  E-value=1.4e-15  Score=148.39  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=111.4

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC-------------------cCCCCC--
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG-------------------GRQLDY--  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g-------------------g~~~~~--  101 (202)
                      .++++.+++++++++.+++||++|++.+    .+.++.+.++|+|+|+++|+.                   |+...+  
T Consensus       686 ~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~  765 (1025)
T 1gte_A          686 QDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGV  765 (1025)
T ss_dssp             GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEE
T ss_pred             cCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCC
Confidence            4778889999999999999999999843    466899999999999997631                   111111  


Q ss_pred             -ccch----HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        102 -VPAS----IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       102 -~~~~----~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                       +++.    ++.+.++++.+ +++|||++|||+|++|+.+++++|||+|++||++++    .+.    .+++.+.++|+.
T Consensus       766 sg~~~~~~~~~~v~~v~~~~-~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~----~~~----~~~~~~~~~l~~  836 (1025)
T 1gte_A          766 SGTAIRPIALRAVTTIARAL-PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDF----TVIQDYCTGLKA  836 (1025)
T ss_dssp             ESGGGHHHHHHHHHHHHHHS-TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT----SCT----THHHHHHHHHHH
T ss_pred             CcccchhHHHHHHHHHHHHc-CCCCEEEecCcCCHHHHHHHHHcCCCEEEEeecccc----CCc----cHHHHHHHHHHH
Confidence             2222    35677887776 469999999999999999999999999999999985    244    467889999999


Q ss_pred             HHHHhCCCCHHhhhh
Q psy16780        177 ALALSGCTSVGEIQR  191 (202)
Q Consensus       177 ~m~~~G~~~i~el~~  191 (202)
                      +|...|+.+++++++
T Consensus       837 ~l~~~G~~~i~~l~g  851 (1025)
T 1gte_A          837 LLYLKSIEELQGWDG  851 (1025)
T ss_dssp             HHHHTTCGGGTTSBT
T ss_pred             HHHHcCCCCHHHHhC
Confidence            999999999999987

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=99.58  E-value=1.8e-14  Score=125.64  Aligned_cols=137  Identities=19%  Similarity=0.110  Sum_probs=99.8

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC--H----HHHHHHHHcC-CcEEEeeccCc--------C-----------CCC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT--A----EDAKIGVEMG-ASAIMVSNHGG--------R-----------QLD  100 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~--~----~~a~~l~~aG-~d~I~v~~~gg--------~-----------~~~  100 (202)
                      .+++...++++++++.++.|+.+|....  .    ..+..+.+.+ ++.+...++..        +           +..
T Consensus       176 ~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGl  255 (354)
T 3tjx_A          176 YDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGL  255 (354)
T ss_dssp             TSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEE
T ss_pred             cCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCccccccc
Confidence            4667778899999999999999998732  1    2233444443 44444332210        0           001


Q ss_pred             CccchH----HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        101 YVPASI----EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       101 ~~~~~~----~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      ++++.+    +.+.++++.+ .++|||++|||+|++|+++++.+|||+||++|+|++    +|+    .+++.++++|+.
T Consensus       256 SG~~~~~~a~~~v~~~~~~~-~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y----~GP----~~~~~I~~~L~~  326 (354)
T 3tjx_A          256 GGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE----EGP----SIFERLTSELLG  326 (354)
T ss_dssp             EGGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHH----HCT----THHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHhc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhh----cCc----hHHHHHHHHHHH
Confidence            233333    3345555554 479999999999999999999999999999999986    477    467789999999


Q ss_pred             HHHHhCCCCHHhhhhc
Q psy16780        177 ALALSGCTSVGEIQRE  192 (202)
Q Consensus       177 ~m~~~G~~~i~el~~~  192 (202)
                      +|...|+++++|++++
T Consensus       327 ~L~~~G~~si~e~~G~  342 (354)
T 3tjx_A          327 VMAKKRYQTLDEFRGK  342 (354)
T ss_dssp             HHHHHTCCSGGGTTTC
T ss_pred             HHHHcCCCCHHHHhCh
Confidence            9999999999999987

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=99.55  E-value=1.5e-13  Score=119.87  Aligned_cols=145  Identities=16%  Similarity=0.190  Sum_probs=108.7

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEecc----------CHHHHHHHHHcCCcEEEeeccCcCC-CC------CccchHHH
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGIL----------TAEDAKIGVEMGASAIMVSNHGGRQ-LD------YVPASIEA  108 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~----------~~~~a~~l~~aG~d~I~v~~~gg~~-~~------~~~~~~~~  108 (202)
                      +.++++..++++++++.+++||++|.+.          ..+.++.+.++|+|+|+++++...+ ..      ..+.+++.
T Consensus       108 ~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~  187 (350)
T 3b0p_A          108 LLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDW  187 (350)
T ss_dssp             GGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHH
T ss_pred             HhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHH
Confidence            4578889999999999999999999862          1466789999999999997642111 11      11236778


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHh------h--hcC---hHHHHHHHHHHHHHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL------A--HSG---KSGVRKVLDILINEFDQA  177 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~------~--~~G---~~~v~~~i~~l~~~L~~~  177 (202)
                      +.++++.+ +++|||++|||+|++|+.++++ |||+|++||+++..-      .  ..|   .....+.++.+.++++..
T Consensus       188 i~~ik~~~-~~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  265 (350)
T 3b0p_A          188 VHRLKGDF-PQLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEE  265 (350)
T ss_dssp             HHHHHHHC-TTSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            88888776 3799999999999999999998 999999999988520      0  112   224556778888888877


Q ss_pred             HHHhCCCCHHhhhhccc
Q psy16780        178 LALSGCTSVGEIQREMV  194 (202)
Q Consensus       178 m~~~G~~~i~el~~~~~  194 (202)
                      +. .|. .+..++++..
T Consensus       266 ~~-~g~-~~~~~~kh~~  280 (350)
T 3b0p_A          266 VL-KGT-PPWAVLRHML  280 (350)
T ss_dssp             HH-HTC-CHHHHHTTST
T ss_pred             HH-cCc-cHHHHHHHHH
Confidence            77 466 6788877643

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=99.38  E-value=7e-12  Score=108.86  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccC------------HHHHHHHHHcCCcEEEeeccCcCC--CCCcc-chHHHHHHH
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILT------------AEDAKIGVEMGASAIMVSNHGGRQ--LDYVP-ASIEALPEI  112 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~------------~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~-~~~~~l~~i  112 (202)
                      .+.+..++++++|+.++.||.||++..            .+.++.+.++|+|+|.+++..-..  ...++ ..++.+.++
T Consensus       193 R~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~i  272 (340)
T 3gr7_A          193 RYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELI  272 (340)
T ss_dssp             HHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHH
Confidence            345678899999999999999999731            466889999999999998632111  11112 256677888


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       273 k~~~--~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la  312 (340)
T 3gr7_A          273 RREA--DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLR  312 (340)
T ss_dssp             HHHT--TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred             HHHc--CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHh
Confidence            8887  79999999999999999999999 999999999996

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=99.33  E-value=1.6e-11  Score=106.40  Aligned_cols=103  Identities=18%  Similarity=0.155  Sum_probs=82.9

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcC-C-CCCcc-chHHHHHHHH
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGR-Q-LDYVP-ASIEALPEIA  113 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~-~-~~~~~-~~~~~l~~i~  113 (202)
                      +.+..++++++|+.+++||.+|++.        +.    +.++.+.++|+|+|.+++.... + ....+ ..++.+.+++
T Consensus       194 ~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir  273 (338)
T 1z41_A          194 YRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIR  273 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHH
Confidence            4557889999999999999999863        23    5578889999999999874211 1 11122 2456778888


Q ss_pred             HHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        114 KAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       114 ~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       274 ~~~--~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~  312 (338)
T 1z41_A          274 EQA--DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR  312 (338)
T ss_dssp             HHH--CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred             HHC--CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHh
Confidence            888  89999999999999999999998 999999999986

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=99.32  E-value=1.9e-11  Score=105.22  Aligned_cols=98  Identities=20%  Similarity=0.287  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++++++. ++|++.+ +.+.++++.+.++|+|+|.+.+.  ||+......+++..++++++.+  ++|||++|||++
T Consensus       108 ~~~~~~l~~~-gi~vi~~-v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~--~iPviaaGGI~~  183 (328)
T 2gjl_A          108 GEHIAEFRRH-GVKVIHK-CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFAD  183 (328)
T ss_dssp             HHHHHHHHHT-TCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC--CSCEEEESSCCS
T ss_pred             HHHHHHHHHc-CCCEEee-CCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc--CCCEEEECCCCC
Confidence            5688888875 8899865 57889999999999999999763  3332111246778888887766  799999999999


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++|+.+++++|||+|++||+|+..
T Consensus       184 ~~~v~~al~~GAdgV~vGs~~~~~  207 (328)
T 2gjl_A          184 GRGLVAALALGADAINMGTRFLAT  207 (328)
T ss_dssp             HHHHHHHHHHTCSEEEESHHHHTS
T ss_pred             HHHHHHHHHcCCCEEEECHHHHcC
Confidence            999999999999999999999864

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=99.31  E-value=1.7e-11  Score=100.67  Aligned_cols=100  Identities=20%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .++.+...+.++++++.++ |+++|.+     .+.    +.++.+.++|+|+|..+. |   ...+..+++.++.+++.+
T Consensus        98 ~~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tst-g---~~~gga~~~~i~~v~~~v  172 (225)
T 1mzh_A           98 SEKYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTST-G---FAPRGTTLEEVRLIKSSA  172 (225)
T ss_dssp             TTCHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC-S---CSSSCCCHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECC-C---CCCCCCCHHHHHHHHHHh
Confidence            4566667778999999888 9999983     343    346888999999995543 2   122345778888888888


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      ++++||+++|||+|++|+.+++.+|||.|++++.
T Consensus       173 ~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~  206 (225)
T 1mzh_A          173 KGRIKVKASGGIRDLETAISMIEAGADRIGTSSG  206 (225)
T ss_dssp             TTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhCchHHHHccH
Confidence            7789999999999999999999999998888764

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=99.31  E-value=1.5e-11  Score=106.18  Aligned_cols=95  Identities=20%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      +.++++++ .++||++|. .+.+.++.+.++|+|+|.+++.  ||+.  +..+++..++++++.+  ++|||++|||+++
T Consensus       101 ~~i~~l~~-~g~~v~~~v-~~~~~a~~~~~~GaD~i~v~g~~~GG~~--g~~~~~~ll~~i~~~~--~iPViaaGGI~~~  174 (332)
T 2z6i_A          101 KYMERFHE-AGIIVIPVV-PSVALAKRMEKIGADAVIAEGMEAGGHI--GKLTTMTLVRQVATAI--SIPVIAAGGIADG  174 (332)
T ss_dssp             GTHHHHHH-TTCEEEEEE-SSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSH
T ss_pred             HHHHHHHH-cCCeEEEEe-CCHHHHHHHHHcCCCEEEEECCCCCCCC--CCccHHHHHHHHHHhc--CCCEEEECCCCCH
Confidence            46777776 489999885 6788999999999999999764  3321  2346778888888877  8999999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +++.+++++|||+|++||+|+..
T Consensus       175 ~~~~~al~~GAdgV~vGs~~l~~  197 (332)
T 2z6i_A          175 EGAAAGFMLGAEAVQVGTRFVVA  197 (332)
T ss_dssp             HHHHHHHHTTCSEEEECHHHHTB
T ss_pred             HHHHHHHHcCCCEEEecHHHhcC
Confidence            99999999999999999999964

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=99.31  E-value=1.7e-11  Score=105.68  Aligned_cols=96  Identities=21%  Similarity=0.292  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeec--cCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSN--HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++++++ .++||+++ +.+.+.++.+.++|+|+|.+++  .||+.  +..+++..++++++.+  ++|||++|||++
T Consensus       114 ~~~~~~l~~-~g~~v~~~-v~s~~~a~~a~~~GaD~i~v~g~~~GG~~--G~~~~~~ll~~i~~~~--~iPviaaGGI~~  187 (326)
T 3bo9_A          114 TKYIRELKE-NGTKVIPV-VASDSLARMVERAGADAVIAEGMESGGHI--GEVTTFVLVNKVSRSV--NIPVIAAGGIAD  187 (326)
T ss_dssp             HHHHHHHHH-TTCEEEEE-ESSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCS
T ss_pred             HHHHHHHHH-cCCcEEEE-cCCHHHHHHHHHcCCCEEEEECCCCCccC--CCccHHHHHHHHHHHc--CCCEEEECCCCC
Confidence            457777776 47888864 5788999999999999999987  34432  2346788888888877  899999999999


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++|+.+++++||++|++||+|+..
T Consensus       188 ~~dv~~al~~GA~gV~vGs~~~~~  211 (326)
T 3bo9_A          188 GRGMAAAFALGAEAVQMGTRFVAS  211 (326)
T ss_dssp             HHHHHHHHHHTCSEEEESHHHHTB
T ss_pred             HHHHHHHHHhCCCEEEechHHHcC
Confidence            999999999999999999999964

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=99.28  E-value=9e-11  Score=96.80  Aligned_cols=101  Identities=15%  Similarity=0.080  Sum_probs=81.0

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC-CCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL-DYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      +|+...+.++.+++. +.++++ .+.+.++++.+.++|+|+|.+.++|.+.. ....++++.+.++++.   ++|+|++|
T Consensus       114 ~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~---~ipvIA~G  188 (232)
T 3igs_A          114 RPVAVEALLARIHHH-HLLTMA-DCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA---GCRVIAEG  188 (232)
T ss_dssp             CSSCHHHHHHHHHHT-TCEEEE-ECCSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT---TCCEEEES
T ss_pred             CHHHHHHHHHHHHHC-CCEEEE-eCCCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc---CCcEEEEC
Confidence            566677888888864 777776 46789999999999999997655443221 1234577888887663   79999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ||++++|+.+++++||++|++|++++.
T Consensus       189 GI~t~~d~~~~~~~GadgV~VGsal~~  215 (232)
T 3igs_A          189 RYNSPALAAEAIRYGAWAVTVGSAITR  215 (232)
T ss_dssp             CCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred             CCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence            999999999999999999999999874

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=99.26  E-value=5.3e-11  Score=103.59  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=81.6

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCC---CCCcc-chHHHHH
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQ---LDYVP-ASIEALP  110 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~---~~~~~-~~~~~l~  110 (202)
                      +.+..++++++|+.+  +.||.+|++.        +.    +.++.+.++|+|+|.+++.+-..   ....+ ..++.+.
T Consensus       202 ~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~  281 (349)
T 3hgj_A          202 MRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFAD  281 (349)
T ss_dssp             HHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHH
Confidence            345688999999998  7899999973        33    34788899999999998532111   11111 3456678


Q ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       282 ~ir~~~--~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la  323 (349)
T 3hgj_A          282 AVRKRV--GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR  323 (349)
T ss_dssp             HHHHHH--CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred             HHHHHc--CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence            888877  79999999999999999999999 999999999996

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.26  E-value=1.1e-10  Score=94.73  Aligned_cols=99  Identities=21%  Similarity=0.251  Sum_probs=79.6

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC--CC--ccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL--DY--VPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~--~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      ...+.++++++.+ +.++++ .+.++++++.+.++|+|+|.+++++.+..  +.  ..+.++.++++++.+  ++||+++
T Consensus       105 ~~~~~i~~~~~~~~~~~v~~-~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~  181 (223)
T 1y0e_A          105 TLDELVSYIRTHAPNVEIMA-DIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAE  181 (223)
T ss_dssp             CHHHHHHHHHHHCTTSEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEE
T ss_pred             CHHHHHHHHHHhCCCceEEe-cCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC--CCCEEEe
Confidence            4467899999887 566655 55788899999999999998766543321  11  344667788888776  7999999


Q ss_pred             cCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        126 GGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       126 GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      |||++++|+.+++++|||+|++||+++
T Consensus       182 GGI~~~~~~~~~~~~Gad~v~vG~al~  208 (223)
T 1y0e_A          182 GNVITPDMYKRVMDLGVHCSVVGGAIT  208 (223)
T ss_dssp             SSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             cCCCCHHHHHHHHHcCCCEEEEChHHc
Confidence            999999999999999999999999976

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=99.25  E-value=1.1e-10  Score=96.12  Aligned_cols=101  Identities=17%  Similarity=0.056  Sum_probs=80.7

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC-CCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL-DYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      +|+...+.++.+++. +.++++ .+.+.++++.+.++|+|+|.+.++|.+.. ....++++.+.++++.   ++|||++|
T Consensus       114 ~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~---~ipvIA~G  188 (229)
T 3q58_A          114 RPVDIDSLLTRIRLH-GLLAMA-DCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAEG  188 (229)
T ss_dssp             CSSCHHHHHHHHHHT-TCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT---TCCEEEES
T ss_pred             ChHHHHHHHHHHHHC-CCEEEE-ecCCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc---CCCEEEEC
Confidence            566677888888864 777776 46789999999999999997655543221 1234577778877653   79999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ||+|++|+.+++++||++|++|++++.
T Consensus       189 GI~t~~d~~~~~~~GadgV~VGsai~~  215 (229)
T 3q58_A          189 RYNTPALAANAIEHGAWAVTVGSAITR  215 (229)
T ss_dssp             SCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred             CCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence            999999999999999999999999874

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=99.20  E-value=2e-10  Score=100.48  Aligned_cols=102  Identities=19%  Similarity=0.075  Sum_probs=80.6

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEecc---------CH----HHHHHHHHcCCcEEEeeccCcCC---CCCcc-chHHHHH
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGIL---------TA----EDAKIGVEMGASAIMVSNHGGRQ---LDYVP-ASIEALP  110 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~~---------~~----~~a~~l~~aG~d~I~v~~~gg~~---~~~~~-~~~~~l~  110 (202)
                      .+..++++++|+.+  ++||.+|++.         +.    +.++.+.++|+|+|.+++.+-..   ...++ ..++.+.
T Consensus       209 r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~  288 (363)
T 3l5l_A          209 RFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAE  288 (363)
T ss_dssp             HHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHH
Confidence            45688999999998  6899999872         12    34788899999999998742111   11112 2456677


Q ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      .+++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       289 ~ir~~~--~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la  330 (363)
T 3l5l_A          289 RVRREA--KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA  330 (363)
T ss_dssp             HHHHHH--TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred             HHHHHc--CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence            888877  79999999999999999999999 999999999996

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=99.16  E-value=4.4e-10  Score=98.27  Aligned_cols=99  Identities=23%  Similarity=0.319  Sum_probs=78.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--Cc---CCCCCc------cchHHHHHHHHHHhCCCc
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GG---RQLDYV------PASIEALPEIAKAVGHKV  120 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg---~~~~~~------~~~~~~l~~i~~~~~~~i  120 (202)
                      ..+.++++++ .++||+++ +.+.++++.+.++|+|+|.+++.  ||   +.....      ..++..++++++.+  ++
T Consensus       134 ~~~~i~~~~~-~g~~v~~~-v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~--~i  209 (369)
T 3bw2_A          134 DREVIARLRR-AGTLTLVT-ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DI  209 (369)
T ss_dssp             CHHHHHHHHH-TTCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC--SS
T ss_pred             cHHHHHHHHH-CCCeEEEE-CCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc--Cc
Confidence            3678888887 47888875 56889999999999999999663  22   221111      23477788887776  89


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      |||+.|||++++++.+++++|||+|++||+|+..
T Consensus       210 PViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~  243 (369)
T 3bw2_A          210 PVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLAT  243 (369)
T ss_dssp             CEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred             eEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence            9999999999999999999999999999999853

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=99.13  E-value=5.8e-10  Score=96.95  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=80.3

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCCC--CCcc-chHHHHH
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQL--DYVP-ASIEALP  110 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~~--~~~~-~~~~~l~  110 (202)
                      .+.+..++++++|+.+  ++||.+|++.        +.    +.++.+.++ +|+|.++..+-...  ...+ ..++.+.
T Consensus       192 R~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~  270 (343)
T 3kru_A          192 RARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAE  270 (343)
T ss_dssp             HTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHH
Confidence            3456789999999998  7899999873        22    446788889 99999964211110  0111 2456677


Q ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      .+++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       271 ~ir~~~--~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la  312 (343)
T 3kru_A          271 TIKKRC--NIKTSAVGLITTQELAEEILSNERADLVALGRELLR  312 (343)
T ss_dssp             HHHHHH--TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHHhc--CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhc
Confidence            888888  79999999999999999999998 999999999996

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.11  E-value=1.3e-09  Score=89.75  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             hhhccCccccHHHHHHHHHhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccC--------------c-----
Q psy16780         43 ITSQLDETINWSDVTWLKTITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHG--------------G-----   96 (202)
Q Consensus        43 ~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~g--------------g-----   96 (202)
                      ++...+.....+.++++++.+++||.+....+       .+.++.+.++|+|+|++..-.              |     
T Consensus        59 l~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~  138 (248)
T 1geq_A           59 LKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVF  138 (248)
T ss_dssp             HHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEE
T ss_pred             HHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEE
Confidence            33444556678899999999999999876433       478899999999999986311              0     


Q ss_pred             -----CC----------CC---------C--cc-----c-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCE
Q psy16780         97 -----RQ----------LD---------Y--VP-----A-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKM  144 (202)
Q Consensus        97 -----~~----------~~---------~--~~-----~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~  144 (202)
                           +.          .+         +  +.     + ..+.+.++++.+  ++||+++|||++++++.+++.+|||+
T Consensus       139 ~i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~~~~Gad~  216 (248)
T 1geq_A          139 LAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANG  216 (248)
T ss_dssp             EECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             EECCCCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEEeecCCHHHHHHHHHcCCCE
Confidence                 00          01         0  11     1 234566676665  79999999999999999999999999


Q ss_pred             EEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        145 VFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       145 V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      |.+||+++.....+. +.+.++++.+++.|+
T Consensus       217 vivGsai~~~~~~~~-~~~~~~~~~~~~~~~  246 (248)
T 1geq_A          217 VVVGSALVKIIGEKG-REATEFLKKKVEELL  246 (248)
T ss_dssp             EEECHHHHHHHHHHG-GGCHHHHHHHHHHHH
T ss_pred             EEEcHHHHhhHhhCh-HHHHHHHHHHHHHhc
Confidence            999999987532122 556666666655543

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=99.08  E-value=4.7e-10  Score=98.61  Aligned_cols=101  Identities=12%  Similarity=-0.063  Sum_probs=77.7

Q ss_pred             ccccHHHHHHHHHhcCC-CEEEEeccC---------------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         49 ETINWSDVTWLKTITKL-PIVLKGILT---------------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~-Pv~vK~~~~---------------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      +.+..++++++|+.++- ||.+|++..               .+.++.+.++|+|+|.++++.-.+...+ ..++.+..+
T Consensus       216 ~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~i  294 (377)
T 2r14_A          216 ARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQM  294 (377)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHH
Confidence            34578899999999842 999998631               2447889999999999976421111111 145667788


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++.+  ++|||++||| +++++.++++.| ||+|++||+++.
T Consensus       295 k~~~--~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~  333 (377)
T 2r14_A          295 RQRF--KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA  333 (377)
T ss_dssp             HHHC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHC--CCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHh
Confidence            8887  7999999999 699999999998 999999999996

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=99.08  E-value=1.8e-09  Score=91.05  Aligned_cols=102  Identities=14%  Similarity=0.126  Sum_probs=81.6

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcC---------------------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGR---------------------------------   97 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~---------------------------------   97 (202)
                      ..+.++.+++.+++||+.|.- .++.++..+..+|||+|.+...--.                                 
T Consensus       108 s~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~  187 (272)
T 3tsm_A          108 APEFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALK  187 (272)
T ss_dssp             CHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTT
T ss_pred             CHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh
Confidence            678999999999999999964 6777888899999999988642100                                 


Q ss_pred             -----------CCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         98 -----------QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        98 -----------~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                 .+..-.++++...++.+.++.++|+|+.|||++++|+.++..+||++|.+|+++++
T Consensus       188 ~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr  254 (272)
T 3tsm_A          188 LSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMR  254 (272)
T ss_dssp             SCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHT
T ss_pred             cCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcC
Confidence                       00111234556667777777689999999999999999999999999999999996

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=99.08  E-value=8.9e-10  Score=96.45  Aligned_cols=99  Identities=14%  Similarity=0.051  Sum_probs=78.4

Q ss_pred             ccccHHHHHHHHHhcCC-CEEEEecc-----------CH----HHHHHHHHcCCcEEEeeccCcCCCCCcc-chHHHHHH
Q psy16780         49 ETINWSDVTWLKTITKL-PIVLKGIL-----------TA----EDAKIGVEMGASAIMVSNHGGRQLDYVP-ASIEALPE  111 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~-Pv~vK~~~-----------~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~-~~~~~l~~  111 (202)
                      +.+..++++++|+.++- ||.+|++.           +.    +.++.+.++|+|+|.+++..-   ++.+ ..++.+..
T Consensus       211 ~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~---~~~~~~~~~~~~~  287 (365)
T 2gou_A          211 LRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW---DDAPDTPVSFKRA  287 (365)
T ss_dssp             THHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT---TBCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---CCCCCccHHHHHH
Confidence            44677899999998842 99999874           12    337889999999999987421   1111 13456778


Q ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        112 IAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       112 i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +++.+  ++|||++||| +++++.++++.| ||+|++||+++.
T Consensus       288 i~~~~--~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~  327 (365)
T 2gou_A          288 LREAY--QGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIA  327 (365)
T ss_dssp             HHHHC--CSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred             HHHHC--CCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence            88877  7999999999 999999999998 999999999996

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=99.06  E-value=1.6e-09  Score=91.37  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--C--------------cC-----------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--G--------------GR-----------------   97 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--g--------------g~-----------------   97 (202)
                      ..+.++.+++.+++||+.|.. .++.++..+..+|+|+|.+...  .              |.                 
T Consensus       101 s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~  180 (272)
T 3qja_A          101 SLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALK  180 (272)
T ss_dssp             HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            467999999999999999964 6777788899999999998421  0              10                 


Q ss_pred             -----------CCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         98 -----------QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        98 -----------~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                 .+..-.++++.+.++++.++.++|+++.|||++++|+.++..+||++|.+|++++.
T Consensus       181 ~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~  247 (272)
T 3qja_A          181 AGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVT  247 (272)
T ss_dssp             HTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred             CCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhC
Confidence                       00011234556666666665579999999999999999999999999999999985

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=99.06  E-value=8.6e-10  Score=98.23  Aligned_cols=103  Identities=10%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             cccHHHHHHHHHhc------CCCEEEEecc----------CH----HHHHHHHH-cCCcEEEeeccCcCC--C---CCcc
Q psy16780         50 TINWSDVTWLKTIT------KLPIVLKGIL----------TA----EDAKIGVE-MGASAIMVSNHGGRQ--L---DYVP  103 (202)
Q Consensus        50 ~~~~~~i~~i~~~~------~~Pv~vK~~~----------~~----~~a~~l~~-aG~d~I~v~~~gg~~--~---~~~~  103 (202)
                      .|..++++++|+.+      ++||.+|++.          +.    +.++.+.+ +|+|+|.|++.+...  .   ..+.
T Consensus       222 Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~  301 (419)
T 3l5a_A          222 RLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGD  301 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSST
T ss_pred             HHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCc
Confidence            56788999999987      6899999863          22    45788889 999999998753210  1   1111


Q ss_pred             -chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        104 -ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       104 -~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                       .....+..+++.+.+++|||++|||++++++.++++. ||+|++||+++.
T Consensus       302 ~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia  351 (419)
T 3l5a_A          302 HFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVT  351 (419)
T ss_dssp             TTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred             cccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence             2345667777777667999999999999999999999 999999999985

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.03  E-value=3e-09  Score=86.93  Aligned_cols=97  Identities=15%  Similarity=0.140  Sum_probs=76.0

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEE--EeeccC-cCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAI--MVSNHG-GRQLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I--~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      ...+.++.+++.+ +.++++ .+.++++++.+.++|+|+|  .+.+.. ++. ....++++.++++++.   ++||+++|
T Consensus       119 ~~~~~i~~i~~~~~~~~v~~-~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~-~~~~~~~~~i~~~~~~---~ipvia~G  193 (234)
T 1yxy_A          119 DIASFIRQVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLSGYTPYSR-QEAGPDVALIEALCKA---GIAVIAEG  193 (234)
T ss_dssp             CHHHHHHHHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSC-CSSSCCHHHHHHHHHT---TCCEEEES
T ss_pred             cHHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEeeeccccCCCCc-CCCCCCHHHHHHHHhC---CCCEEEEC
Confidence            4467999999887 667665 4568889999999999999  555431 221 1123466777777653   69999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ||+|.+|+.+++++|||+|++||+++
T Consensus       194 GI~s~~~~~~~~~~Gad~v~vGsal~  219 (234)
T 1yxy_A          194 KIHSPEEAKKINDLGVAGIVVGGAIT  219 (234)
T ss_dssp             CCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred             CCCCHHHHHHHHHCCCCEEEEchHHh
Confidence            99999999999999999999999886

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=99.03  E-value=2.3e-09  Score=93.80  Aligned_cols=100  Identities=11%  Similarity=-0.060  Sum_probs=78.6

Q ss_pred             ccccHHHHHHHHHhcC-CCEEEEeccC------------H----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780         49 ETINWSDVTWLKTITK-LPIVLKGILT------------A----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE  111 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~-~Pv~vK~~~~------------~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~  111 (202)
                      +.+..++++++|+.++ .||.+|++..            .    +.++.+.++|+|+|.++++.-.+.  ....++.+.+
T Consensus       211 ~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--~~~~~~~~~~  288 (364)
T 1vyr_A          211 ARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG--KPYSEAFRQK  288 (364)
T ss_dssp             THHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC--CCCCHHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCC--CcccHHHHHH
Confidence            4467889999999983 3999998732            2    237889999999999986421111  1124566778


Q ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        112 IAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       112 i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +++.+  ++|||++||| +++++.++++.| ||+|++||+++.
T Consensus       289 v~~~~--~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~  328 (364)
T 1vyr_A          289 VRERF--HGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIA  328 (364)
T ss_dssp             HHHHC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHHC--CCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHh
Confidence            88877  7999999999 999999999998 999999999986

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=99.03  E-value=1.2e-09  Score=96.82  Aligned_cols=102  Identities=12%  Similarity=-0.016  Sum_probs=78.6

Q ss_pred             ccccHHHHHHHHHhcC-CCEEEEeccC---------------HHHHHHHHHcC------CcEEEeeccCcCCCCCcc---
Q psy16780         49 ETINWSDVTWLKTITK-LPIVLKGILT---------------AEDAKIGVEMG------ASAIMVSNHGGRQLDYVP---  103 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~-~Pv~vK~~~~---------------~~~a~~l~~aG------~d~I~v~~~gg~~~~~~~---  103 (202)
                      +.+..+++++||+.++ .||.+|++..               .+.++.+.++|      +|+|.+++....+....+   
T Consensus       221 ~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~  300 (402)
T 2hsa_B          221 CKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGR  300 (402)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTT
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCcccc
Confidence            5567889999999984 4999998631               24578889999      999999764211101011   


Q ss_pred             -----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        104 -----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       104 -----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                           ..++.+..+++.+  ++|||++||| +++++.++++.| ||+|++||+++.
T Consensus       301 ~~~~~~~~~~~~~vk~~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~  353 (402)
T 2hsa_B          301 LGSEEEEARLMRTLRNAY--QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFIS  353 (402)
T ss_dssp             TTHHHHHHHHHHHHHHHC--SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             ccCCcchHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHh
Confidence                 1345567777777  7999999999 999999999998 999999999986

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=99.01  E-value=6.9e-10  Score=97.54  Aligned_cols=102  Identities=16%  Similarity=-0.032  Sum_probs=76.7

Q ss_pred             ccccHHHHHHHHHhcCC-CEEEEecc---------------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         49 ETINWSDVTWLKTITKL-PIVLKGIL---------------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~-Pv~vK~~~---------------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      +.+..++++++|+.++- ||.+|++.               ..+.++.+.++|+|+|.+++..-.+.......+..+..+
T Consensus       217 ~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~v  296 (376)
T 1icp_A          217 CRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPM  296 (376)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHH
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHH
Confidence            45578899999999842 99999962               135578889999999999764211100011123445677


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++.+  ++|||++||| +++++.++++.| ||+|++||+++.
T Consensus       297 r~~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~  335 (376)
T 1icp_A          297 RKAY--KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS  335 (376)
T ss_dssp             HHHC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHc--CCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHh
Confidence            7777  7999999999 899999999987 999999999986

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=99.01  E-value=5.7e-09  Score=86.89  Aligned_cols=86  Identities=22%  Similarity=0.190  Sum_probs=70.1

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                      ++.|+.=...++..++++.++|+++|..-+. .|+.  .+..+++.++.+++..  ++|||+.|||.+++|+.+++++||
T Consensus       135 Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG--~Gi~~~~lI~~I~e~~--~vPVI~eGGI~TPsDAa~AmeLGA  210 (265)
T 1wv2_A          135 GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSG--LGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGC  210 (265)
T ss_dssp             TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTC
T ss_pred             CCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCC--CCcCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCC
Confidence            6666644568899999999999999976443 2221  1345778888888865  899999999999999999999999


Q ss_pred             CEEEEcHHHHH
Q psy16780        143 KMVFVGRPALW  153 (202)
Q Consensus       143 d~V~ig~~~l~  153 (202)
                      |+|++|+++..
T Consensus       211 dgVlVgSAI~~  221 (265)
T 1wv2_A          211 EAVLMNTAIAH  221 (265)
T ss_dssp             SEEEESHHHHT
T ss_pred             CEEEEChHHhC
Confidence            99999999974

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=98.98  E-value=2.8e-10  Score=97.12  Aligned_cols=131  Identities=21%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             cHHHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEeeccCc-----CCC--------------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVSNHGG-----RQL--------------------------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~~~gg-----~~~--------------------------   99 (202)
                      ..+.++++++.+++|+++|... ..+.++.+.++|+|+|+.+....     ...                          
T Consensus        66 ~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a~~~G  145 (305)
T 2nv1_A           66 DPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEG  145 (305)
T ss_dssp             CHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhCCCCEEecccccchHHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHHHHHHCC
Confidence            4678899998899999998763 35667777778888886321100     000                          


Q ss_pred             -C------------------------------------C-------ccchHHHHHHHHHHhCCCcEEE--EecCCCCHHH
Q psy16780        100 -D------------------------------------Y-------VPASIEALPEIAKAVGHKVDVY--LDGGVRYGTD  133 (202)
Q Consensus       100 -~------------------------------------~-------~~~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D  133 (202)
                       +                                    .       .+.+++.+.++++..  ++||+  ++|||++++|
T Consensus       146 ad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~--~iPvi~~a~GGI~~~~d  223 (305)
T 2nv1_A          146 ASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDG--KLPVVNFAAGGVATPAD  223 (305)
T ss_dssp             CSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHT--SCSSCEEBCSCCCSHHH
T ss_pred             CCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHhc--CCCEEEEeccCCCCHHH
Confidence             0                                    0       012334556665554  78998  9999999999


Q ss_pred             HHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780        134 VFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ  190 (202)
Q Consensus       134 ~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~  190 (202)
                      +.+++.+|||+|++||+++..   ..+   ...++.+++.++.++...+..+++++.
T Consensus       224 ~~~~~~~GadgV~vGsai~~~---~~p---~~~~~~l~~~~~~~~~~~~~~~~~~~~  274 (305)
T 2nv1_A          224 AALMMQLGADGVFVGSGIFKS---DNP---AKFAKAIVEATTHFTDYKLIAELSKEL  274 (305)
T ss_dssp             HHHHHHTTCSCEEECGGGGGS---SCH---HHHHHHHHHHHHTTTCHHHHHHHTSCC
T ss_pred             HHHHHHcCCCEEEEcHHHHcC---CCH---HHHHHHHHHHHHHhcChhhHHHHHHHh
Confidence            999999999999999999852   222   234455555555554444443444443

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=98.97  E-value=2.2e-09  Score=93.91  Aligned_cols=95  Identities=9%  Similarity=-0.085  Sum_probs=76.5

Q ss_pred             CccccHHHHHHHHHhcCC-CEEEEeccC---------------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780         48 DETINWSDVTWLKTITKL-PIVLKGILT---------------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE  111 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~-Pv~vK~~~~---------------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~  111 (202)
                      .+.+..+++++||+.++- ||.+|++..               .+.++.+.++|+|+|.+++..    . ++   ..+..
T Consensus       210 R~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~----~-~~---~~~~~  281 (361)
T 3gka_A          210 RARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF----G-GD---AIGQQ  281 (361)
T ss_dssp             HSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC----S-TT---CCHHH
T ss_pred             cHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC----C-CH---HHHHH
Confidence            345678999999999843 999998731               234788899999999997642    1 11   34566


Q ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        112 IAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       112 i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +++.+  ++|||++||+ +++++.++++.| ||+|++||+++.
T Consensus       282 ik~~~--~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la  321 (361)
T 3gka_A          282 LKAAF--GGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIA  321 (361)
T ss_dssp             HHHHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHHc--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence            77777  7899999999 999999999998 999999999996

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=98.97  E-value=2e-09  Score=94.10  Aligned_cols=94  Identities=16%  Similarity=-0.011  Sum_probs=75.8

Q ss_pred             ccccHHHHHHHHHhcC-CCEEEEeccC-----------H----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         49 ETINWSDVTWLKTITK-LPIVLKGILT-----------A----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~-~Pv~vK~~~~-----------~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      +.+..+++++||+.++ -||.+|++..           .    +.++.+.++|+|+|.+++..    . ++   ..+..+
T Consensus       203 ~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~----~-~~---~~~~~i  274 (362)
T 4ab4_A          203 ARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE----A-DD---SIGPLI  274 (362)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC----C-TT---CCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC----C-CH---HHHHHH
Confidence            4467889999999984 3999998731           2    33788899999999998643    1 11   345667


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++.+  ++|||++||+ +++++.++++.| ||+|++||+++.
T Consensus       275 k~~~--~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la  313 (362)
T 4ab4_A          275 KEAF--GGPYIVNERF-DKASANAALASGKADAVAFGVPFIA  313 (362)
T ss_dssp             HHHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHC--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence            7777  7899999999 999999999998 999999999986

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=98.96  E-value=3e-08  Score=82.49  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEeccCHH---HHHHHHHcCCcEEEeeccC--------------c----------C
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGILTAE---DAKIGVEMGASAIMVSNHG--------------G----------R   97 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~---~a~~l~~aG~d~I~v~~~g--------------g----------~   97 (202)
                      ...+++...+.++++|+.+++|+++-...++.   ..+.+.++|+|++++....              |          +
T Consensus        75 ~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t  154 (262)
T 1rd5_A           75 SGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAI  154 (262)
T ss_dssp             TTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTS
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCC
Confidence            33456667889999999999999875323321   1344889999998875311              0          0


Q ss_pred             C-------------------CC--Ccc-----c-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         98 Q-------------------LD--YVP-----A-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        98 ~-------------------~~--~~~-----~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      .                   ..  .+.     + ..+.+.++++..  ++||++.|||++++++.+++.+|||+|.+||+
T Consensus       155 ~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~--~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSa  232 (262)
T 1rd5_A          155 PEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSA  232 (262)
T ss_dssp             CHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             CHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc--CCeEEEECCcCCHHHHHHHHHcCCCEEEEChH
Confidence            0                   00  111     1 223566666655  79999999999999999999999999999999


Q ss_pred             HHHHhhh-cChHHHHHHHHHHHHHHHH
Q psy16780        151 ALWGLAH-SGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       151 ~l~~~~~-~G~~~v~~~i~~l~~~L~~  176 (202)
                      +...... ..++...+.+..+.+.|+.
T Consensus       233 i~~~~~~~~~~~~~~~~~~~~~~~l~~  259 (262)
T 1rd5_A          233 MVRQLGEAASPKQGLRRLEEYARGMKN  259 (262)
T ss_dssp             HHHHHHSSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHhccChhHHHHHHHHHHHHHHH
Confidence            9986532 2222222344555555543

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.92  E-value=2.5e-08  Score=83.99  Aligned_cols=132  Identities=11%  Similarity=0.082  Sum_probs=88.5

Q ss_pred             HhhhccCccccHHHHHHHHHh-cCCCEEEEecc------C-HHHHHHHHHcCCcEEEeeccC--------------c---
Q psy16780         42 YITSQLDETINWSDVTWLKTI-TKLPIVLKGIL------T-AEDAKIGVEMGASAIMVSNHG--------------G---   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~------~-~~~a~~l~~aG~d~I~v~~~g--------------g---   96 (202)
                      .+......+..++.++++|+. .++|+++-.-.      . ...++.+.++|+|++++..-+              |   
T Consensus        74 AL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~  153 (271)
T 3nav_A           74 ALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQP  153 (271)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeE
Confidence            344555666788999999988 79999875421      1 356899999999998874210              0   


Q ss_pred             -------CC-------------------CCC--c-----cch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         97 -------RQ-------------------LDY--V-----PAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        97 -------~~-------------------~~~--~-----~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                             +.                   ..+  |     +.. .+.+.++++..  ++|++..+||++++++.+++..||
T Consensus       154 I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gA  231 (271)
T 3nav_A          154 IFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGA  231 (271)
T ss_dssp             EEEECTTCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTC
T ss_pred             EEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCC
Confidence                   00                   000  1     111 23456666554  799999999999999999999999


Q ss_pred             CEEEEcHHHHHHhhhc--ChHHHHHHHHHHHHHHH
Q psy16780        143 KMVFVGRPALWGLAHS--GKSGVRKVLDILINEFD  175 (202)
Q Consensus       143 d~V~ig~~~l~~~~~~--G~~~v~~~i~~l~~~L~  175 (202)
                      |+|.+||++...+...  +++...+.+..+.++|+
T Consensus       232 DgvIVGSAiv~~i~~~~~~~~~~~~~~~~~~~~l~  266 (271)
T 3nav_A          232 AGAISGSAVVKIIETHLDNPAKQLTELANFTQAMK  266 (271)
T ss_dssp             SEEEESHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEECHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence            9999999999865432  22222233444444444

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.90  E-value=4.4e-08  Score=82.29  Aligned_cols=131  Identities=13%  Similarity=0.100  Sum_probs=87.2

Q ss_pred             hhhccCccccHHHHHHHHHh-cCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780         43 ITSQLDETINWSDVTWLKTI-TKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHG--------------G----   96 (202)
Q Consensus        43 ~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~g--------------g----   96 (202)
                      +....+.+..++.++++|+. .++|+++-.-.+       ...++.+.++|+|++++..-.              |    
T Consensus        73 L~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i  152 (267)
T 3vnd_A           73 LAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPI  152 (267)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEE
T ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEE
Confidence            44455666778999999988 799988753322       356899999999998884210              0    


Q ss_pred             ------CC-------------------CC---Cc----cc-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         97 ------RQ-------------------LD---YV----PA-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        97 ------~~-------------------~~---~~----~~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                            +.                   ..   +.    ++ ..+.+.++++..  ++||+..|||++++++.+++..|||
T Consensus       153 ~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gAD  230 (267)
T 3vnd_A          153 FIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAA  230 (267)
T ss_dssp             CEECTTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCS
T ss_pred             EEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCC
Confidence                  00                   00   11    11 123455555544  7999999999999999999999999


Q ss_pred             EEEEcHHHHHHhhhc--ChHHHHHHHHHHHHHHH
Q psy16780        144 MVFVGRPALWGLAHS--GKSGVRKVLDILINEFD  175 (202)
Q Consensus       144 ~V~ig~~~l~~~~~~--G~~~v~~~i~~l~~~L~  175 (202)
                      +|.+||++++.+...  ..+...+.+..+.++|+
T Consensus       231 gvVVGSaiv~~i~~~~~~~~~~~~~~~~~~~~l~  264 (267)
T 3vnd_A          231 GAISGSAVVKIIEAHQHDEATLLAKLAEFTTAMK  264 (267)
T ss_dssp             EEEECHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            999999999865432  22223333444444444

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=98.89  E-value=5e-08  Score=81.66  Aligned_cols=120  Identities=18%  Similarity=0.047  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+.++..++.+  ++.++.-...+.+.++.+.+.|+|+|...+. .|+.  .+..+.+.++.+++..  ++||++.|||+
T Consensus       113 ~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--~~~~~~~~l~~i~~~~--~iPviv~gGI~  188 (264)
T 1xm3_A          113 VETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIG  188 (264)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCC
T ss_pred             HHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCC--CCCCCHHHHHHHHhcC--CCCEEEEeCCC
Confidence            35667676653  5556543456788999999999999943121 1222  1223456777777754  89999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHHHhhhcCh-HHHHHHHHHHHHHHHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALWGLAHSGK-SGVRKVLDILINEFDQALA  179 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~-~~v~~~i~~l~~~L~~~m~  179 (202)
                      +++|+.+++++|||+|.+||+++..   ..+ +.+.++.+.++.....++.
T Consensus       189 t~eda~~~~~~GAdgViVGSAi~~a---~dp~~~~~~l~~~v~~~~~~~~~  236 (264)
T 1xm3_A          189 SPKDAAYAMELGADGVLLNTAVSGA---DDPVKMARAMKLAVEAGRLSYEA  236 (264)
T ss_dssp             SHHHHHHHHHTTCSEEEESHHHHTS---SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEEcHHHhCC---CCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998752   222 3445555555554444443

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=98.88  E-value=2.1e-09  Score=91.68  Aligned_cols=96  Identities=24%  Similarity=0.283  Sum_probs=75.5

Q ss_pred             HHHHHHHh-cCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC-----------------------CC-------cc
Q psy16780         55 DVTWLKTI-TKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL-----------------------DY-------VP  103 (202)
Q Consensus        55 ~i~~i~~~-~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~-----------------------~~-------~~  103 (202)
                      .++.+++. .+.++++ .+.+.+++.++.++|+|.|.+.|.+|+..                       +.       ..
T Consensus       115 li~~i~~~~~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~  193 (297)
T 4adt_A          115 EYNHINKHKFKTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLR  193 (297)
T ss_dssp             SSCCCCGGGCSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHT
T ss_pred             HHHHHHhcCCCCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCC
Confidence            45555553 4788887 57888999999999999999987655431                       11       13


Q ss_pred             chHHHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        104 ASIEALPEIAKAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       104 ~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++++.++++++.+  ++|++  +.|||++++|+.+++.+|||+|++|+.|+.
T Consensus       194 ~~~~ll~~i~~~~--~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~  243 (297)
T 4adt_A          194 APIDLILLTRKLK--RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFE  243 (297)
T ss_dssp             CCHHHHHHHHHHT--SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHT
T ss_pred             CCHHHHHHHHHhc--CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHc
Confidence            4566778887776  57776  999999999999999999999999999985

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=98.88  E-value=1e-09  Score=93.03  Aligned_cols=123  Identities=22%  Similarity=0.222  Sum_probs=87.8

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC---------------------CCC---------ccchHHHHHHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ---------------------LDY---------VPASIEALPEIA  113 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~---------------------~~~---------~~~~~~~l~~i~  113 (202)
                      ++++++. +.+++.+..+.++|+|+|.+.+-.+..                     ...         .+++++.+.+++
T Consensus       125 ~i~l~~~-v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~  203 (297)
T 2zbt_A          125 KVPFVCG-ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH  203 (297)
T ss_dssp             SSCEEEE-ESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH
T ss_pred             CceEEee-cCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH
Confidence            6777764 467888888999999999886310100                     000         123455677776


Q ss_pred             HHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        114 KAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       114 ~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                      +..  ++|++  ++|||++++|+.+++.+|||+|++||+++..   ..   ....++.+++.++.++...++.+++++++
T Consensus       204 ~~~--~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~---~d---p~~~~~~l~~~i~~~~~~~~~~~~~~~~g  275 (297)
T 2zbt_A          204 DHG--RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS---GD---PRKRARAIVRAVAHYNDPEVLAEVSEDLG  275 (297)
T ss_dssp             HHS--SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS---SC---HHHHHHHHHHHHHTTTCHHHHHHHHTTCC
T ss_pred             Hhc--CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC---CC---HHHHHHHHHHHHHHHhchHhhhHHHHhcC
Confidence            655  78888  9999999999999999999999999998742   22   23566777777777777667777788776


Q ss_pred             cccc
Q psy16780        192 EMVV  195 (202)
Q Consensus       192 ~~~~  195 (202)
                      ..+.
T Consensus       276 ~~~~  279 (297)
T 2zbt_A          276 EPMV  279 (297)
T ss_dssp             CCC-
T ss_pred             ceeE
Confidence            6543

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=98.87  E-value=8.7e-09  Score=90.61  Aligned_cols=97  Identities=5%  Similarity=-0.184  Sum_probs=75.1

Q ss_pred             cccHHHHHHHHHhcC-CCEEEEeccC---------------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHH
Q psy16780         50 TINWSDVTWLKTITK-LPIVLKGILT---------------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA  113 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~-~Pv~vK~~~~---------------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~  113 (202)
                      .+..++++++|+.++ .||.+|++..               .+.++.+.++|+|+|.+++..-..  ...+ .+ +..++
T Consensus       228 r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~-~~-~~~ir  303 (379)
T 3aty_A          228 QLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--QQIG-DV-VAWVR  303 (379)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--CCCC-CH-HHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--CCcc-HH-HHHHH
Confidence            356788999999884 4899998631               244678889999999998742111  0112 24 66777


Q ss_pred             HHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        114 KAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       114 ~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +.+  ++|||++||| +++++.++++.| ||+|++||+++.
T Consensus       304 ~~~--~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~  341 (379)
T 3aty_A          304 GSY--SGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIA  341 (379)
T ss_dssp             TTC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHC--CCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHh
Confidence            666  7999999999 999999999998 999999999996

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=98.84  E-value=1.1e-07  Score=79.60  Aligned_cols=105  Identities=10%  Similarity=0.053  Sum_probs=77.3

Q ss_pred             CccccHHHHHHHHHh-cCCCEEEEec-cC-------HHHHHHHHHcCCcEEEeeccCc----------------------
Q psy16780         48 DETINWSDVTWLKTI-TKLPIVLKGI-LT-------AEDAKIGVEMGASAIMVSNHGG----------------------   96 (202)
Q Consensus        48 d~~~~~~~i~~i~~~-~~~Pv~vK~~-~~-------~~~a~~l~~aG~d~I~v~~~gg----------------------   96 (202)
                      ..+...+.++++|+. +++||++ .. .+       ...++.+.++|+|++++..-..                      
T Consensus        77 ~~~~~~~~v~~ir~~~~~~Pv~l-m~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~  155 (268)
T 1qop_A           77 TPAQCFEMLAIIREKHPTIPIGL-LMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICP  155 (268)
T ss_dssp             CHHHHHHHHHHHHHHCSSSCEEE-EECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEEC
T ss_pred             CHHHHHHHHHHHHhcCCCCCEEE-EEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence            345567899999999 7999876 22 11       4778899999999988753110                      


Q ss_pred             --CC-------------------CC--Cc------cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780         97 --RQ-------------------LD--YV------PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        97 --~~-------------------~~--~~------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                        +.                   ..  +|      +...+.+.++++..  ++||++.|||++++++.+++..|||+|.+
T Consensus       156 p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~--~~pi~vggGI~t~e~~~~~~~agAD~vVV  233 (268)
T 1qop_A          156 PNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAIS  233 (268)
T ss_dssp             TTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             CCCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc--CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence              00                   00  01      11245667776655  79999999999999999999999999999


Q ss_pred             cHHHHHHh
Q psy16780        148 GRPALWGL  155 (202)
Q Consensus       148 g~~~l~~~  155 (202)
                      ||++....
T Consensus       234 GSai~~~~  241 (268)
T 1qop_A          234 GSAIVKII  241 (268)
T ss_dssp             CHHHHHHH
T ss_pred             ChHHhhhH
Confidence            99999864

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=98.84  E-value=2.1e-08  Score=82.88  Aligned_cols=100  Identities=24%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHHHH----HHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAEDAK----IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~a~----~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .+|.+...+.|+.+++.++- ..+|.+     ++.+...    .+.++|+|+|..|.+-    ..+..+.+.+..+++.+
T Consensus       123 ~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf----~~ggAt~~dv~lmr~~v  197 (239)
T 3ngj_A          123 AKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGF----GTHGATPEDVKLMKDTV  197 (239)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSS----SSCCCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCC----CCCCCCHHHHHHHHHhh
Confidence            57888888899999998852 256654     4555544    4489999999987431    12235666666666667


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      +++++|.++||||+.+|+.+++++||+.++..+.
T Consensus       198 g~~v~VKasGGIrt~~da~~~i~aGA~riGtS~~  231 (239)
T 3ngj_A          198 GDKALVKAAGGIRTFDDAMKMINNGASRIGASAG  231 (239)
T ss_dssp             GGGSEEEEESSCCSHHHHHHHHHTTEEEEEESCH
T ss_pred             CCCceEEEeCCCCCHHHHHHHHHhcccceecccH
Confidence            7789999999999999999999999998877654

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=98.83  E-value=6.3e-08  Score=78.37  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=61.2

Q ss_pred             ccCHHHHHHHHHcCCcEEEeeccCcCCC-CC-ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         72 ILTAEDAKIGVEMGASAIMVSNHGGRQL-DY-VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        72 ~~~~~~a~~l~~aG~d~I~v~~~gg~~~-~~-~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.++++++.+.+.|+|+|.+++..+++. .+ .+..++.+.++++.+  ++||++.||| +++++.+++.+||++|.+||
T Consensus       117 v~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs  193 (221)
T 1yad_A          117 VHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGM-TPDRLRDVKQAGADGIAVMS  193 (221)
T ss_dssp             ECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEESSC-CGGGHHHHHHTTCSEEEESH
T ss_pred             cCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHcCCCEEEEhH
Confidence            3688999999999999999865322221 11 133566777777666  7999999999 99999999999999999999


Q ss_pred             HHHH
Q psy16780        150 PALW  153 (202)
Q Consensus       150 ~~l~  153 (202)
                      .++.
T Consensus       194 ~i~~  197 (221)
T 1yad_A          194 GIFS  197 (221)
T ss_dssp             HHHT
T ss_pred             HhhC
Confidence            9974

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.81  E-value=9.2e-09  Score=96.04  Aligned_cols=104  Identities=17%  Similarity=0.038  Sum_probs=79.5

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCC------CCCcc-chH
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQ------LDYVP-ASI  106 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~------~~~~~-~~~  106 (202)
                      ++.+..++++++|+.+  ++||++|++.        +.    +.++.+.++|+|+|.++++....      ....+ ..+
T Consensus       190 r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~  269 (671)
T 1ps9_A          190 RMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFS  269 (671)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTH
T ss_pred             HHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHH
Confidence            3556788999999998  7999999872        23    45788899999999997632111      00111 123


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        107 EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       107 ~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +.+..+++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       270 ~~~~~i~~~~--~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~  315 (671)
T 1ps9_A          270 WVTRKLKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA  315 (671)
T ss_dssp             HHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred             HHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHh
Confidence            4566666655  79999999999999999999998 999999999986

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=98.81  E-value=2.7e-08  Score=82.95  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=77.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--CcC-----------CC------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--GGR-----------QL------------------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--gg~-----------~~------------------   99 (202)
                      ..+.++.+++.+++||..|.- .+..++..+.++|||+|.+...  ...           .+                  
T Consensus        94 ~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~  173 (254)
T 1vc4_A           94 SLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIALEA  173 (254)
T ss_dssp             CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            678999999999999999974 6777888899999999998542  100           00                  


Q ss_pred             ------------CCccchHHHHHHHHHHhCC---CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 ------------DYVPASIEALPEIAKAVGH---KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 ------------~~~~~~~~~l~~i~~~~~~---~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                  ..-.++++.+.++++.++.   ++|+|+.|||+|++|+.++.. ||++|.+|++++.
T Consensus       174 gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~  241 (254)
T 1vc4_A          174 GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMR  241 (254)
T ss_dssp             TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHT
T ss_pred             CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcC
Confidence                        0112344455555555533   689999999999999999999 9999999999986

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=98.80  E-value=7e-08  Score=82.89  Aligned_cols=45  Identities=33%  Similarity=0.457  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhCCCcEE--EEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        107 EALPEIAKAVGHKVDV--YLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       107 ~~l~~i~~~~~~~ipi--ia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +.+.++++..  ++||  ++.|||.|++|+.+++.+|||+|++||+++.
T Consensus       230 ell~~i~~~~--~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~  276 (330)
T 2yzr_A          230 EVLLEVKKLG--RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFK  276 (330)
T ss_dssp             HHHHHHHHHT--SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHT
T ss_pred             HHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhc
Confidence            4455565544  7888  6999999999999999999999999999985

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=98.80  E-value=9.8e-08  Score=79.40  Aligned_cols=106  Identities=11%  Similarity=0.231  Sum_probs=82.7

Q ss_pred             Cccc---cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC----------------c-----------
Q psy16780         48 DETI---NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG----------------G-----------   96 (202)
Q Consensus        48 d~~~---~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g----------------g-----------   96 (202)
                      |+++   +.+.+..+|+.+++||..|.- .++.++..+..+|||+|-+...-                |           
T Consensus        85 d~~~F~Gs~~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~  164 (258)
T 4a29_A           85 EEKYFNGSYETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDEN  164 (258)
T ss_dssp             CSTTTCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHH
T ss_pred             CCCCCCCCHHHHHHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHH
Confidence            5554   688999999999999999964 78888888888999998765320                0           


Q ss_pred             -----------------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         97 -----------------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        97 -----------------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                       |++..-..+.....++...++.++.+|+.+||++++|+.++...|+|+|.||.+|++
T Consensus       165 El~rAl~~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr  238 (258)
T 4a29_A          165 DLDIALRIGARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMR  238 (258)
T ss_dssp             HHHHHHHTTCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHH
T ss_pred             HHHHHhcCCCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence                             001111234445556666677789999999999999999999999999999999997

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.79  E-value=2.3e-08  Score=81.80  Aligned_cols=76  Identities=18%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh---CCCEEEEcHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL---GAKMVFVGRPA  151 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~---GAd~V~ig~~~  151 (202)
                      .+.++.+.++|++.|.+++....+... .++++.+.++++.+  ++|||++|||++.+|+.+++++   ||++|++||++
T Consensus       152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~-g~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al  228 (244)
T 2y88_A          152 WDVLERLDSEGCSRFVVTDITKDGTLG-GPNLDLLAGVADRT--DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL  228 (244)
T ss_dssp             HHHHHHHHHTTCCCEEEEETTTTTTTS-CCCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred             HHHHHHHHhCCCCEEEEEecCCccccC-CCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence            677899999999999987642111111 24777888887655  8999999999999999999998   99999999999


Q ss_pred             HH
Q psy16780        152 LW  153 (202)
Q Consensus       152 l~  153 (202)
                      +.
T Consensus       229 ~~  230 (244)
T 2y88_A          229 YA  230 (244)
T ss_dssp             HT
T ss_pred             HC
Confidence            85

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.78  E-value=5e-08  Score=80.19  Aligned_cols=76  Identities=24%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.+.+++.+..+... .++++.+.++++.+  ++|||++|||++++|+.+++.+|||+|++||+++.
T Consensus       155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~-g~~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~  230 (252)
T 1ka9_F          155 VEWAVKGVELGAGEILLTSMDRDGTKE-GYDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF  230 (252)
T ss_dssp             HHHHHHHHHHTCCEEEEEETTTTTTCS-CCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEecccCCCCcC-CCCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc
Confidence            577899999999999886432111112 24688888888877  89999999999999999999999999999999985

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=98.78  E-value=9.1e-08  Score=80.94  Aligned_cols=102  Identities=20%  Similarity=0.215  Sum_probs=72.8

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .+|-+...+.|+.+++.++-| .+|.+     ++.+.    ++.+.++|+|+|..+.+-++. ...+.+...++++.+..
T Consensus       154 ~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~-GAT~edv~lmr~~v~~~  231 (288)
T 3oa3_A          154 EKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFNGP-GASIENVSLMSAVCDSL  231 (288)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSSC-CCCHHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCC-CCCHHHHHHHHHHHHHh
Confidence            466677888999999988777 47876     45555    567789999999987421110 01122344444444333


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      ..+++|.++||||+.+|+.+++.+||+.++..+
T Consensus       232 g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~  264 (288)
T 3oa3_A          232 QSETRVKASGGIRTIEDCVKMVRAGAERLGASA  264 (288)
T ss_dssp             SSCCEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             CCCceEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence            568999999999999999999999999766655

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.77  E-value=7.2e-08  Score=78.52  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|+|.|.+.+....... ..++++.+.++++.+  ++||+++|||++.+|+.+++.+||++|++||+++.
T Consensus       157 ~e~~~~~~~~G~d~i~~~~~~~~g~~-~~~~~~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~  232 (253)
T 1h5y_A          157 VKWAKEVEELGAGEILLTSIDRDGTG-LGYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF  232 (253)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTTTTTC-SCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             HHHHHHHHhCCCCEEEEecccCCCCc-CcCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence            47789999999999998653211111 123677788887766  79999999999999999999999999999999975

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=98.76  E-value=1.2e-08  Score=105.08  Aligned_cols=96  Identities=11%  Similarity=0.122  Sum_probs=70.9

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHH----HHcCCcEEE---eecc--CcC-C-CCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIG----VEMGASAIM---VSNH--GGR-Q-LDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l----~~aG~d~I~---v~~~--gg~-~-~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .++.++ ..+++++ +.+.+..+++.+    .++|+|+|+   +.|.  ||. . .+...+....++++++.+  ++|||
T Consensus       684 ~~~~l~-~~gi~~i-~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~--~ipvi  759 (2060)
T 2uva_G          684 ANEYIQ-TLGIRHI-SFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCS--NIVLV  759 (2060)
T ss_dssp             HHHHHH-HSCCSEE-EECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTST--TEEEE
T ss_pred             HHHHHH-HcCCeEE-EecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHc--CCCEE
Confidence            444444 4589988 455555555544    899999999   5542  222 1 122244566778887766  79999


Q ss_pred             EecCCCCHHHHHHHH-----------HhCCCEEEEcHHHHHH
Q psy16780        124 LDGGVRYGTDVFKAL-----------ALGAKMVFVGRPALWG  154 (202)
Q Consensus       124 a~GGI~~~~D~~kal-----------~~GAd~V~ig~~~l~~  154 (202)
                      +.|||.+++|+.+++           ++|||+|+|||.|+..
T Consensus       760 aaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t  801 (2060)
T 2uva_G          760 AGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTA  801 (2060)
T ss_dssp             EESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGB
T ss_pred             EeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcC
Confidence            999999999999999           9999999999999864

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=98.75  E-value=4.8e-08  Score=80.10  Aligned_cols=76  Identities=24%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-----C-CCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-----G-AKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-----G-Ad~V~ig  148 (202)
                      .+.++.+.++|++.|.+++....+... .++++.+.++++.+  ++|||++|||++++|+.+++..     | ||+|++|
T Consensus       147 ~e~~~~~~~~G~~~i~~t~~~~~g~~~-g~~~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vg  223 (241)
T 1qo2_A          147 VSLLKRLKEYGLEEIVHTEIEKDGTLQ-EHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVG  223 (241)
T ss_dssp             HHHHHHHHTTTCCEEEEEETTHHHHTC-CCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred             HHHHHHHHhCCCCEEEEEeecccccCC-cCCHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEee
Confidence            355788999999999997642111111 24688888888887  8999999999999999999998     9 9999999


Q ss_pred             HHHHH
Q psy16780        149 RPALW  153 (202)
Q Consensus       149 ~~~l~  153 (202)
                      |+|+.
T Consensus       224 sal~~  228 (241)
T 1qo2_A          224 RAFLE  228 (241)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99985

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=98.75  E-value=8.1e-08  Score=80.15  Aligned_cols=87  Identities=16%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCC-cEEEEecCCCCHHHHHHHHHhC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHK-VDVYLDGGVRYGTDVFKALALG  141 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~-ipiia~GGI~~~~D~~kal~~G  141 (202)
                      ++.|+-....++..++++.++|+++|.--+. -|++  .+..+.+.+..+++.. .+ +|||+.|||.+++|+.+++++|
T Consensus       124 Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGsG--~Gi~~~~~L~~i~~~~-~~~vPVI~~GGI~tpsDAa~AmeLG  200 (268)
T 2htm_A          124 DFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSG--WGVRTRALLELFAREK-ASLPPVVVDAGLGLPSHAAEVMELG  200 (268)
T ss_dssp             TCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTTC--CCSTTHHHHHHHHHTT-TTSSCBEEESCCCSHHHHHHHHHTT
T ss_pred             CCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcCC--cccCCHHHHHHHHHhc-CCCCeEEEeCCCCCHHHHHHHHHcC
Confidence            4344322357899999999999999965332 2321  1344566778877622 26 9999999999999999999999


Q ss_pred             CCEEEEcHHHHH
Q psy16780        142 AKMVFVGRPALW  153 (202)
Q Consensus       142 Ad~V~ig~~~l~  153 (202)
                      ||+|.+|+++..
T Consensus       201 AdgVlVgSAI~~  212 (268)
T 2htm_A          201 LDAVLVNTAIAE  212 (268)
T ss_dssp             CCEEEESHHHHT
T ss_pred             CCEEEEChHHhC
Confidence            999999999875

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=98.74  E-value=5.4e-08  Score=80.05  Aligned_cols=76  Identities=12%  Similarity=0.087  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.|.+++... ......++++.+.++++.+  ++|||++|||++.+|+.+++.+|||+|++||+++.
T Consensus       154 ~e~~~~~~~~G~~~i~~~~~~~-~g~~~g~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~  229 (253)
T 1thf_D          154 RDWVVEVEKRGAGEILLTSIDR-DGTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF  229 (253)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTT-TTSCSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             HHHHHHHHHCCCCEEEEEeccC-CCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence            4678999999999998864321 1111124677888887665  79999999999999999999999999999999985

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=98.73  E-value=5.9e-08  Score=77.50  Aligned_cols=99  Identities=21%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             cHHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-------------------CCC----------C
Q psy16780         52 NWSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-------------------RQL----------D  100 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-------------------~~~----------~  100 (202)
                      ..+.++.+|+.+  ++++.+..+.++++++.+.++|+|+| ++....                   +.-          +
T Consensus        48 ~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad  126 (205)
T 1wa3_A           48 ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHT  126 (205)
T ss_dssp             HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCC
Confidence            345788888876  34544444578999999999999999 643211                   000          0


Q ss_pred             --C-cc---chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        101 --Y-VP---ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       101 --~-~~---~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                        . .+   ...+.++++++.++ ++||+++|||. .+++.+++.+||++|.+||.++.
T Consensus       127 ~vk~~~~~~~g~~~~~~l~~~~~-~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~  183 (205)
T 1wa3_A          127 ILKLFPGEVVGPQFVKAMKGPFP-NVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK  183 (205)
T ss_dssp             EEEETTHHHHHHHHHHHHHTTCT-TCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred             EEEEcCccccCHHHHHHHHHhCC-CCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC
Confidence              0 01   11233444444332 79999999996 78999999999999999999874

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.73  E-value=2.8e-08  Score=81.51  Aligned_cols=76  Identities=20%  Similarity=0.186  Sum_probs=60.3

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh---CCCEEEEcHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL---GAKMVFVGRPA  151 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~---GAd~V~ig~~~  151 (202)
                      .+.++.+.+.|++.|.+.+... ......++++.+.++++.+  ++|||++|||++++|+.+++++   |||+|++||++
T Consensus       149 ~e~~~~~~~~G~~~i~~~~~~~-~~~~~g~~~~~~~~i~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al  225 (244)
T 1vzw_A          149 YETLDRLNKEGCARYVVTDIAK-DGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL  225 (244)
T ss_dssp             HHHHHHHHHTTCCCEEEEEC--------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred             HHHHHHHHhCCCCEEEEeccCc-ccccCCCCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHH
Confidence            4667999999999998875311 1111124678888888766  7999999999999999999998   99999999999


Q ss_pred             HH
Q psy16780        152 LW  153 (202)
Q Consensus       152 l~  153 (202)
                      +.
T Consensus       226 ~~  227 (244)
T 1vzw_A          226 YA  227 (244)
T ss_dssp             HT
T ss_pred             Hc
Confidence            84

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.72  E-value=3.3e-08  Score=93.25  Aligned_cols=103  Identities=11%  Similarity=0.029  Sum_probs=77.2

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEecc---------C-H----HHHHHHHHcCCcEEEeeccCcCCC--------CCcc
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGIL---------T-A----EDAKIGVEMGASAIMVSNHGGRQL--------DYVP  103 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~~---------~-~----~~a~~l~~aG~d~I~v~~~gg~~~--------~~~~  103 (202)
                      .+.|..++++++|+.+  +.||++|++.         + .    +.++.+.+ |+|.+.+++.+...+        ....
T Consensus       198 R~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~  276 (729)
T 1o94_A          198 RARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQ  276 (729)
T ss_dssp             HTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCT
T ss_pred             HhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCc
Confidence            4566889999999998  8999999862         1 2    33455554 899999976431000        0111


Q ss_pred             -chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        104 -ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       104 -~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                       ..+.....+++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       277 ~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~  326 (729)
T 1o94_A          277 GHTIPWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA  326 (729)
T ss_dssp             TTTHHHHHHHHTTC--SSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred             cccHHHHHHHHHHC--CCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhc
Confidence             1355667777766  89999999999999999999998 999999999985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.70  E-value=3.1e-08  Score=92.81  Aligned_cols=102  Identities=9%  Similarity=-0.073  Sum_probs=75.1

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCc-----CCC-CCccchHHH
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGG-----RQL-DYVPASIEA  108 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg-----~~~-~~~~~~~~~  108 (202)
                      ..|..++++++|+.+  ++||.+|++.        +.    +.++.+.+ |+|.+.++..+-     ... ......+..
T Consensus       207 ~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~  285 (690)
T 3k30_A          207 MRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEF  285 (690)
T ss_dssp             THHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHH
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHH
Confidence            347789999999998  6799999862        23    33566655 899999976321     000 111112344


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ...+++.+  ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus       286 ~~~i~~~~--~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~  329 (690)
T 3k30_A          286 VAGLKKLT--TKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIA  329 (690)
T ss_dssp             HTTSGGGC--SSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHHHHHc--CCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHh
Confidence            55566666  79999999999999999999998 999999999985

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=98.70  E-value=5.6e-08  Score=81.60  Aligned_cols=89  Identities=26%  Similarity=0.354  Sum_probs=70.9

Q ss_pred             hcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC---------------------C-C---------CccchHHHHH
Q psy16780         62 ITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ---------------------L-D---------YVPASIEALP  110 (202)
Q Consensus        62 ~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~---------------------~-~---------~~~~~~~~l~  110 (202)
                      .+++|+.+ .+.+.+++.+.++.|+|.|-..+..||.                     + +         ...++++.+.
T Consensus       113 ~f~vpfv~-~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~  191 (291)
T 3o07_A          113 KFKVPFVC-GAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLK  191 (291)
T ss_dssp             GCSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHH
T ss_pred             cCCCcEEe-eCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHH
Confidence            45788876 5788999999999999999886543332                     1 1         0135677888


Q ss_pred             HHHHHhCCCcEE--EEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        111 EIAKAVGHKVDV--YLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       111 ~i~~~~~~~ipi--ia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++++..  ++||  |++|||.|++|+.+++.+|||+|++||.++.
T Consensus       192 ~Ike~~--~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~  234 (291)
T 3o07_A          192 DVLEKG--KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFK  234 (291)
T ss_dssp             HHHHHT--SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGG
T ss_pred             HHHHcc--CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhC
Confidence            887775  7888  5699999999999999999999999998875

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=98.69  E-value=2e-07  Score=77.88  Aligned_cols=99  Identities=23%  Similarity=0.229  Sum_probs=75.2

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .++-+...+.|+.+++.++ ...+|.+     ++.+.    ++.+.++|+|+|..|.+    +..+..+.+.+..+++.+
T Consensus       139 ~g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTG----f~~~GAT~edV~lm~~~v  213 (260)
T 3r12_A          139 AKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTG----FGTGGATAEDVHLMKWIV  213 (260)
T ss_dssp             TTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCS----SSSCCCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCC----CCCCCCCHHHHHHHHHHh
Confidence            4677777888999998875 3446865     35444    35678999999998743    122345666677777777


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +++++|-++||||+.+|+.+++.+||+-++..+
T Consensus       214 g~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~  246 (260)
T 3r12_A          214 GDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS  246 (260)
T ss_dssp             CTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             CCCceEEEeCCCCCHHHHHHHHHcCCceeecch
Confidence            789999999999999999999999999776654

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=98.69  E-value=6.6e-08  Score=86.74  Aligned_cols=130  Identities=15%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcC--------------C------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGR--------------Q------------------   98 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~--------------~------------------   98 (202)
                      ..+.|+.+|+.+++||+.|.- .++.++..+..+|||+|-+...--.              +                  
T Consensus        96 s~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~  175 (452)
T 1pii_A           96 SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA  175 (452)
T ss_dssp             CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            577999999999999999964 5566677788999999887643110              0                  


Q ss_pred             ------------CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHH
Q psy16780         99 ------------LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKV  166 (202)
Q Consensus        99 ------------~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~  166 (202)
                                  +..-.++++...++.+.++.++++|+.|||+|++|+.++..+ |++|.+|+++++.      +.....
T Consensus       176 lga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~------~d~~~~  248 (452)
T 1pii_A          176 LGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAH------DDLHAA  248 (452)
T ss_dssp             TTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTC------SCHHHH
T ss_pred             CCCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCC------cCHHHH
Confidence                        011123455666777777778999999999999999999999 9999999999963      222333


Q ss_pred             HHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        167 LDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       167 i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                      ++.+..   ....-||.++.++.+.
T Consensus       249 ~~~l~~---~~~KICGit~~eda~~  270 (452)
T 1pii_A          249 VRRVLL---GENKVCGLTRGQDAKA  270 (452)
T ss_dssp             HHHHHH---CSCEECCCCSHHHHHH
T ss_pred             HHHHHH---HhccccCCCcHHHHHH
Confidence            444432   2345788888887753

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=98.68  E-value=8e-08  Score=88.30  Aligned_cols=76  Identities=16%  Similarity=0.098  Sum_probs=63.4

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|++.|.+++....+...+ ++++.+.++++.+  ++|||++|||++.+|+.+++. .||++|++||+|+.
T Consensus       455 ~e~a~~~~~~Ga~~il~t~~~~dG~~~G-~d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~  531 (555)
T 1jvn_A          455 WELTRACEALGAGEILLNCIDKDGSNSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR  531 (555)
T ss_dssp             HHHHHHHHHTTCCEEEECCGGGTTTCSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence            5889999999999999865321111223 5888999998887  899999999999999999998 79999999999974

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=98.68  E-value=4.1e-08  Score=81.43  Aligned_cols=76  Identities=12%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.+.|++.|.+++........ .++++.+.++++.+  ++|||++|||++++|+.+++.+|||+|++||+++.
T Consensus       159 ~e~~~~~~~~G~~~i~~t~~~~~g~~~-g~~~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~  234 (266)
T 2w6r_A          159 RDWVVEVEKRGAGEILLTSIDRDGTKS-GYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF  234 (266)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTTTTTCS-CCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-
T ss_pred             HHHHHHHHHcCCCEEEEEeecCCCCcC-CCCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHc
Confidence            466799999999999986532111111 24677788887766  89999999999999999999999999999999875

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=98.64  E-value=2.4e-07  Score=77.88  Aligned_cols=122  Identities=16%  Similarity=0.117  Sum_probs=81.5

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec--------cCHHHHHHHHHcCCcEEEeeccCcC------------CC------
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI--------LTAEDAKIGVEMGASAIMVSNHGGR------------QL------   99 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~--------~~~~~a~~l~~aG~d~I~v~~~gg~------------~~------   99 (202)
                      ....+...+.++++|+..++|+++ +.        .....++.+.++|+|++++-.-.-.            .+      
T Consensus        73 G~~~~~~~~~v~~ir~~~~~Pii~-m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~li  151 (271)
T 1ujp_A           73 GMSVQGALELVREVRALTEKPLFL-MTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLL  151 (271)
T ss_dssp             TCCHHHHHHHHHHHHHHCCSCEEE-ECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEE-EecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEe
Confidence            344455678999999998999987 22        1246678899999998876421000            00      


Q ss_pred             -------------------------C--Cc------cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEE
Q psy16780        100 -------------------------D--YV------PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus       100 -------------------------~--~~------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~  146 (202)
                                               .  .|      .+..+.+.++++..  ++||++.|||++++++.++  .|||+|.
T Consensus       152 ap~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~~--~~ADgVI  227 (271)
T 1ujp_A          152 APTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVV  227 (271)
T ss_dssp             CTTCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEE
T ss_pred             CCCCCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHHh--cCCCEEE
Confidence                                     0  01      01134556665544  7999999999999999996  9999999


Q ss_pred             EcHHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        147 VGRPALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       147 ig~~~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                      +||++...... + +.+.++++.++..+
T Consensus       228 VGSAi~~~~~~-~-~~~~~fv~~l~~~~  253 (271)
T 1ujp_A          228 VGSALVRALEE-G-RSLAPLLQEIRQGL  253 (271)
T ss_dssp             ECHHHHHHHHT-T-CCHHHHHHHHHHHH
T ss_pred             EChHHhcccch-H-HHHHHHHHHHHHHH
Confidence            99999986421 1 34555555554444

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=98.64  E-value=5.4e-08  Score=81.36  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=59.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC--CcEEEEecCCCCHHHHHHHHHh--CCCEEEEcHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH--KVDVYLDGGVRYGTDVFKALAL--GAKMVFVGRPA  151 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipiia~GGI~~~~D~~kal~~--GAd~V~ig~~~  151 (202)
                      +.++.+.+. ++.+.++.....+...+ ++++.+.++++.+++  ++|||++|||++.+|+.+++.+  ||++|++||++
T Consensus       162 e~a~~~~~~-a~~il~t~i~~dG~~~G-~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al  239 (260)
T 2agk_A          162 DTFRELRKY-TNEFLIHAADVEGLCGG-IDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL  239 (260)
T ss_dssp             HHHHHHTTT-CSEEEEEC-------CC-CCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred             HHHHHHHHh-cCEEEEEeeccccCcCC-CCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence            889999999 99999965321122223 488899999887632  6999999999999999999987  99999999997

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=98.64  E-value=2e-07  Score=75.36  Aligned_cols=95  Identities=13%  Similarity=0.054  Sum_probs=68.7

Q ss_pred             HHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--CcCCCC-CccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         56 VTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--GGRQLD-YVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--gg~~~~-~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      +..+++..+. ++++.. .++++++.+.+.|+|++.++.-  +++... ..+..++.+.++++.++ ++|+++.|||. +
T Consensus       107 ~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~-~~pvia~GGI~-~  183 (227)
T 2tps_A          107 AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGIT-I  183 (227)
T ss_dssp             HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSCC-T
T ss_pred             HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC-CCCEEEEcCCC-H
Confidence            4555555554 455543 5777788899999999997431  111111 22346777888777662 39999999999 9


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +++.+++.+||++|.+||.++.
T Consensus       184 ~nv~~~~~~Ga~gv~vgs~i~~  205 (227)
T 2tps_A          184 DNAAPVIQAGADGVSMISAISQ  205 (227)
T ss_dssp             TTSHHHHHTTCSEEEESHHHHT
T ss_pred             HHHHHHHHcCCCEEEEhHHhhc
Confidence            9999999999999999999874

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=98.64  E-value=4.1e-07  Score=75.21  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=79.0

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC--------------cCC---------------
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG--------------GRQ---------------   98 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g--------------g~~---------------   98 (202)
                      .....+.++++.+.+.+|+.+.+- .+.++++.++++|+|.|++...-              |.+               
T Consensus        60 ~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~  139 (243)
T 4gj1_A           60 SKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYV  139 (243)
T ss_dssp             GGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEE
T ss_pred             chhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCE
Confidence            444578999999999999999965 78999999999999999986320              000               


Q ss_pred             -----C------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC
Q psy16780         99 -----L------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG  141 (202)
Q Consensus        99 -----~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G  141 (202)
                           +                              ++  ..++.+.+..+++.+ +++|||++||+++.+|+.+. ..+
T Consensus       140 v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~-~~ipviasGGv~~~~Dl~~l-~~~  217 (243)
T 4gj1_A          140 VAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIF-PNICIQASGGVASLKDLENL-KGI  217 (243)
T ss_dssp             EC--------CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHT-TTT
T ss_pred             EEecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhc-CCCCEEEEcCCCCHHHHHHH-Hcc
Confidence                 0                              11  125667777776654 36999999999999999764 667


Q ss_pred             CCEEEEcHHHHH
Q psy16780        142 AKMVFVGRPALW  153 (202)
Q Consensus       142 Ad~V~ig~~~l~  153 (202)
                      +++|.+|++|+.
T Consensus       218 ~~gvivg~Al~~  229 (243)
T 4gj1_A          218 CSGVIVGKALLD  229 (243)
T ss_dssp             CSEEEECHHHHT
T ss_pred             CchhehHHHHHC
Confidence            999999999874

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.63  E-value=5.9e-07  Score=75.01  Aligned_cols=124  Identities=12%  Similarity=0.036  Sum_probs=83.1

Q ss_pred             hhccCccccHHHHHHHHHhc-CCCEEEEec-cC-------HHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780         44 TSQLDETINWSDVTWLKTIT-KLPIVLKGI-LT-------AEDAKIGVEMGASAIMVSNHG--------------G----   96 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~-~~-------~~~a~~l~~aG~d~I~v~~~g--------------g----   96 (202)
                      ......+...+.++++|+.+ ++|+++ .. .+       ..+++.+.++|+|++++..-.              |    
T Consensus        73 ~~G~~~~~~~~~v~~ir~~~~~~Pi~~-m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i  151 (262)
T 2ekc_A           73 KNGIRFEDVLELSETLRKEFPDIPFLL-MTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFV  151 (262)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTSCEEE-ECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEEC
T ss_pred             HcCCCHHHHHHHHHHHHhhcCCCCEEE-EecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence            33344456778999999998 899987 32 11       366788999999998874210              0    


Q ss_pred             ------CC-------------------CCC--c-c-----c-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         97 ------RQ-------------------LDY--V-P-----A-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        97 ------~~-------------------~~~--~-~-----~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                            +.                   ..+  | .     . ..+.+.++++..  ++||+..+||++++++.+ +..||
T Consensus       152 ~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~--~~pv~vG~GI~t~e~~~~-~~~gA  228 (262)
T 2ekc_A          152 PLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC--DKPVVVGFGVSKKEHARE-IGSFA  228 (262)
T ss_dssp             CEECTTCCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHC--CSCEEEESSCCSHHHHHH-HHTTS
T ss_pred             EEeCCCCCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHH-HHcCC
Confidence                  00                   000  0 0     1 113456666654  799999999999999999 88899


Q ss_pred             CEEEEcHHHHHHhhhcChHHHHHHHHHHH
Q psy16780        143 KMVFVGRPALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       143 d~V~ig~~~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      |+|.+||++......+..+.+.++++.++
T Consensus       229 DgvIVGSai~~~~~~~~~~~~~~~~~~~~  257 (262)
T 2ekc_A          229 DGVVVGSALVKLAGQKKIEDLGNLVKELK  257 (262)
T ss_dssp             SEEEECHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CEEEECHHHHhhhhhhhHHHHHHHHHHHH
Confidence            99999999998643333444544444443

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=98.63  E-value=3.6e-07  Score=75.15  Aligned_cols=100  Identities=23%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----c----CHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----L----TAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~----~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      .++-+...+.|+.+++.++ ...+|.+     +    +.+.    ++.+.++|+|+|..+.+-+   ..+..+.+.++.+
T Consensus       108 ~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~---~~~gAt~edv~lm  183 (231)
T 3ndo_A          108 AGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFH---PSGGASVQAVEIM  183 (231)
T ss_dssp             TTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCC---TTCSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCC---CCCCCCHHHHHHH
Confidence            4677778889999999885 3456865     4    5544    3556799999999875311   0234566777777


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      ++.++++++|-++||||+.+|+.+++.+||+-++..+
T Consensus       184 ~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~  220 (231)
T 3ndo_A          184 ARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGLSG  220 (231)
T ss_dssp             HHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred             HHHhCCCceEEEeCCCCCHHHHHHHHHhcchhcccch
Confidence            7777789999999999999999999999999766654

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=98.63  E-value=3.1e-07  Score=76.12  Aligned_cols=80  Identities=14%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCC--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      .++++++.+.+.|+|+|.++.-..+...  ..+..++.+.++++....++|+++.||| +.+++.+++.+||++|.++++
T Consensus       143 ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sa  221 (243)
T 3o63_A          143 HDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRA  221 (243)
T ss_dssp             CSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHH
T ss_pred             CCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHH
Confidence            5788899999999999999763222211  1233566677765542237999999999 899999999999999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      ++.
T Consensus       222 i~~  224 (243)
T 3o63_A          222 ITS  224 (243)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            985

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=98.62  E-value=2.9e-07  Score=75.75  Aligned_cols=76  Identities=14%  Similarity=0.092  Sum_probs=61.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|.|.+....+. ......+++.+.++++.+  ++||+++|||++++|+.++++.|||+|.+|++++.
T Consensus        38 ~~~a~~~~~~G~~~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~  113 (247)
T 3tdn_A           38 RDWVVEVEKRGAGEILLTSIDRD-GTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE  113 (247)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTTT-TCSSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEecCcc-cCCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh
Confidence            57899999999999998653211 111234677788887776  89999999999999999999999999999998874

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=98.58  E-value=2.4e-07  Score=74.36  Aligned_cols=114  Identities=12%  Similarity=0.123  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      .+.++..+ ..+.++++. +.+++++..+.+.|+|+|.+..+       .+..++.+.++++.++.++||++.|||. .+
T Consensus        91 ~~~~~~~~-~~g~~~~~g-~~t~~e~~~a~~~G~d~v~v~~t-------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~  160 (212)
T 2v82_A           91 SEVIRRAV-GYGMTVCPG-CATATEAFTALEAGAQALKIFPS-------SAFGPQYIKALKAVLPSDIAVFAVGGVT-PE  160 (212)
T ss_dssp             HHHHHHHH-HTTCEEECE-ECSHHHHHHHHHTTCSEEEETTH-------HHHCHHHHHHHHTTSCTTCEEEEESSCC-TT
T ss_pred             HHHHHHHH-HcCCCEEee-cCCHHHHHHHHHCCCCEEEEecC-------CCCCHHHHHHHHHhccCCCeEEEeCCCC-HH
Confidence            34554444 457777765 67888999999999999987321       1223556667666553259999999997 99


Q ss_pred             HHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL  178 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m  178 (202)
                      ++.+++.+||++|.+||.++..-  +..+...+.++.+++.++...
T Consensus       161 ~i~~~~~~Ga~gv~vGsai~~~~--~~~~d~~~~~~~l~~~~~~~~  204 (212)
T 2v82_A          161 NLAQWIDAGCAGAGLGSDLYRAG--QSVERTAQQAAAFVKAYREAV  204 (212)
T ss_dssp             THHHHHHHTCSEEEECTTTCCTT--CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEChHHhCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987420  111334455555555555444

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=98.58  E-value=6.5e-07  Score=73.15  Aligned_cols=99  Identities=21%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .++-+...+.|.++++.++-+ .+|.+     ++.+.    ++.+.++|+|+|..+.+-    ..+..+.+.+..+++.+
T Consensus        99 ~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTGf----~~~gat~~dv~~m~~~v  173 (220)
T 1ub3_A           99 AGDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGF----GPRGASLEDVALLVRVA  173 (220)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSS----SSCCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHhh
Confidence            456666788999999988555 66754     45544    466789999999987521    11234566666666666


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      ..++||.++|||++.+|+.+.+.+||+-++..+
T Consensus       174 g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~  206 (220)
T 1ub3_A          174 QGRAQVKAAGGIRDRETALRMLKAGASRLGTSS  206 (220)
T ss_dssp             TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred             CCCCeEEEECCCCCHHHHHHHHHCCCcccchhH
Confidence            678999999999999999999999999555443

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=98.58  E-value=6.5e-07  Score=71.49  Aligned_cols=78  Identities=21%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             cCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      .+++++..+.+.|+|+|.+++.  ++......+..++.+.++++..  ++|+++.|||. ++++.+++.+||++|.+||.
T Consensus       116 ~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~  192 (215)
T 1xi3_A          116 YSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAVISA  192 (215)
T ss_dssp             SSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEESHH
T ss_pred             CCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEhHH
Confidence            6777888888999999998651  1111112344677788887766  79999999999 99999999999999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +..
T Consensus       193 i~~  195 (215)
T 1xi3_A          193 VMG  195 (215)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            874

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.54  E-value=3.9e-07  Score=72.93  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=68.3

Q ss_pred             HHHHHHHHhcCCCEEEEec--cCH-HHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         54 SDVTWLKTITKLPIVLKGI--LTA-EDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~--~~~-~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      +.++.+++ .+.++++-..  .++ +.++.+.+.|+|+|.+... +|...  .+...+.+.++++.+ +++|++++|||+
T Consensus        94 ~~~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~--~~~~~~~i~~l~~~~-~~~~i~~~gGI~  169 (211)
T 3f4w_A           94 SCIRAAKE-AGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAA--GRKPIDDLITMLKVR-RKARIAVAGGIS  169 (211)
T ss_dssp             HHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHHT--TCCSHHHHHHHHHHC-SSCEEEEESSCC
T ss_pred             HHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCccccc--CCCCHHHHHHHHHHc-CCCcEEEECCCC
Confidence            35555554 3777776422  343 6689999999999887531 11111  123556777777665 379999999996


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                       ++++.+++.+|||+|.+||+++.
T Consensus       170 -~~~~~~~~~~Gad~vvvGsai~~  192 (211)
T 3f4w_A          170 -SQTVKDYALLGPDVVIVGSAITH  192 (211)
T ss_dssp             -TTTHHHHHTTCCSEEEECHHHHT
T ss_pred             -HHHHHHHHHcCCCEEEECHHHcC
Confidence             99999999999999999999885

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=98.54  E-value=1.3e-06  Score=72.63  Aligned_cols=80  Identities=24%  Similarity=0.399  Sum_probs=62.3

Q ss_pred             cCCCEEEEec---------cCH---HHH-HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         63 TKLPIVLKGI---------LTA---EDA-KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        63 ~~~Pv~vK~~---------~~~---~~a-~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .++|+++...         .+.   +.+ +.+.++|+|+|.++.         +..++.+.++++.+  ++||+++|||+
T Consensus       144 ~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~---------~~~~~~l~~i~~~~--~ipvva~GGi~  212 (273)
T 2qjg_A          144 WGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY---------TGDIDSFRDVVKGC--PAPVVVAGGPK  212 (273)
T ss_dssp             HTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC---------CSSHHHHHHHHHHC--SSCEEEECCSC
T ss_pred             cCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC---------CCCHHHHHHHHHhC--CCCEEEEeCCC
Confidence            5899998751         333   333 788999999998863         13567788887776  79999999999


Q ss_pred             C--HHH----HHHHHHhCCCEEEEcHHHHH
Q psy16780        130 Y--GTD----VFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~--~~D----~~kal~~GAd~V~ig~~~l~  153 (202)
                      +  .+|    +.+++.+||++|.+||.++.
T Consensus       213 ~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~  242 (273)
T 2qjg_A          213 TNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ  242 (273)
T ss_dssp             CSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence            5  778    55556799999999999975

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=98.44  E-value=1.3e-06  Score=70.50  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ...+.++..++ .++|++.. +.|++++..+.+.|+|+|.+..  .. .-+   ..+.++.++..+ +++|+++.|||. 
T Consensus        92 ~d~~v~~~~~~-~g~~~i~G-~~t~~e~~~A~~~Gad~v~~fp--a~-~~g---G~~~lk~l~~~~-~~ipvvaiGGI~-  161 (207)
T 2yw3_A           92 LLEEVAALAQA-RGVPYLPG-VLTPTEVERALALGLSALKFFP--AE-PFQ---GVRVLRAYAEVF-PEVRFLPTGGIK-  161 (207)
T ss_dssp             CCHHHHHHHHH-HTCCEEEE-ECSHHHHHHHHHTTCCEEEETT--TT-TTT---HHHHHHHHHHHC-TTCEEEEBSSCC-
T ss_pred             CCHHHHHHHHH-hCCCEEec-CCCHHHHHHHHHCCCCEEEEec--Cc-ccc---CHHHHHHHHhhC-CCCcEEEeCCCC-
Confidence            34456666555 68898885 7889999999999999999832  11 001   235567776655 379999999997 


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+++.+.+++||++|.+||.++.
T Consensus       162 ~~n~~~~l~aGa~~vavgSai~~  184 (207)
T 2yw3_A          162 EEHLPHYAALPNLLAVGGSWLLQ  184 (207)
T ss_dssp             GGGHHHHHTCSSBSCEEESGGGS
T ss_pred             HHHHHHHHhCCCcEEEEehhhhC
Confidence            69999999999999999998763

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=98.42  E-value=7.4e-06  Score=67.07  Aligned_cols=123  Identities=18%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             ccHHHHHHHHHh--cCCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCc------------------------CCC---
Q psy16780         51 INWSDVTWLKTI--TKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGG------------------------RQL---   99 (202)
Q Consensus        51 ~~~~~i~~i~~~--~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg------------------------~~~---   99 (202)
                      +-.+.++++|+.  .++|+-+++- .++ ..++.+.++|+|.|+++.-..                        +..   
T Consensus        49 ~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l  128 (228)
T 3ovp_A           49 FGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYL  128 (228)
T ss_dssp             BCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGT
T ss_pred             cCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHH
Confidence            356799999998  4889988864 444 457788899999999964211                        100   


Q ss_pred             -------C-----------Cc----cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh
Q psy16780        100 -------D-----------YV----PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH  157 (202)
Q Consensus       100 -------~-----------~~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~  157 (202)
                             |           ++    +..++.++++++.. .+++|.++|||+ .+.+.++..+|||.+.+||++..+   
T Consensus       129 ~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~-~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a---  203 (228)
T 3ovp_A          129 APWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF-PSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS---  203 (228)
T ss_dssp             GGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC-TTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC---
T ss_pred             HHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC---
Confidence                   0           11    22444566666543 468999999995 799999999999999999988742   


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHh
Q psy16780        158 SGKSGVRKVLDILINEFDQALALS  181 (202)
Q Consensus       158 ~G~~~v~~~i~~l~~~L~~~m~~~  181 (202)
                         +...+.++.+++.++......
T Consensus       204 ---~dp~~~~~~l~~~~~~~~~~~  224 (228)
T 3ovp_A          204 ---EDPRSVINLLRNVCSEAAQKR  224 (228)
T ss_dssp             ---SCHHHHHHHHHHHHHHHHHHC
T ss_pred             ---CCHHHHHHHHHHHHHHHHhhc
Confidence               223355677777777666543

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=98.41  E-value=2.8e-07  Score=81.64  Aligned_cols=104  Identities=16%  Similarity=0.045  Sum_probs=74.0

Q ss_pred             CccccHHHHHHHHHhcC-CCEEEEecc-----------C--------HHHHHHH---HHcC--CcEEEeeccC-cCCCCC
Q psy16780         48 DETINWSDVTWLKTITK-LPIVLKGIL-----------T--------AEDAKIG---VEMG--ASAIMVSNHG-GRQLDY  101 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~-~Pv~vK~~~-----------~--------~~~a~~l---~~aG--~d~I~v~~~g-g~~~~~  101 (202)
                      ...|..+++++||+.++ .||.+|++.           +        .+.++.+   .++|  +|+|.++... ....+.
T Consensus       217 r~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~  296 (407)
T 3tjl_A          217 RARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDV  296 (407)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEEC
T ss_pred             ChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcC
Confidence            34567889999999885 489999872           2        2346778   7889  9999997421 111111


Q ss_pred             ccc-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh---C-CCEEEEcHHHHH
Q psy16780        102 VPA-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL---G-AKMVFVGRPALW  153 (202)
Q Consensus       102 ~~~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~---G-Ad~V~ig~~~l~  153 (202)
                      .+. .+..+..+++.+  ++|||++|||.+.+|+.+++..   | ||+|++||+++.
T Consensus       297 ~~~~~~~~~~~ir~~~--~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia  351 (407)
T 3tjl_A          297 SEEDQAGDNEFVSKIW--KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS  351 (407)
T ss_dssp             CGGGCCCCSHHHHHHC--CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred             CccchhHHHHHHHHHh--CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence            111 123345566666  6899999999999988888776   5 999999999986

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=98.37  E-value=3.8e-06  Score=69.86  Aligned_cols=95  Identities=12%  Similarity=0.060  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHc-CCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEM-GASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~a-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+.++..++ .+.-++| .+.+.++++.+.++ |+|.|-+.+++-+   +-..+++...++.+.++.++++|+.|||+|+
T Consensus       140 ~~l~~~a~~-lGl~~lv-Ev~~~eE~~~A~~l~g~~iIGinnr~l~---t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~  214 (251)
T 1i4n_A          140 KEIYEAAEE-LGMDSLV-EVHSREDLEKVFSVIRPKIIGINTRDLD---TFEIKKNVLWELLPLVPDDTVVVAESGIKDP  214 (251)
T ss_dssp             HHHHHHHHT-TTCEEEE-EECSHHHHHHHHTTCCCSEEEEECBCTT---TCCBCTTHHHHHGGGSCTTSEEEEESCCCCG
T ss_pred             HHHHHHHHH-cCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCcccc---cCCCCHHHHHHHHHhCCCCCEEEEeCCCCCH
Confidence            344544444 4777776 67899999999999 9999988775432   2234455556666666667999999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +|+.++..+ |++|.+|+++++
T Consensus       215 edv~~~~~~-a~avLVG~aimr  235 (251)
T 1i4n_A          215 RELKDLRGK-VNAVLVGTSIMK  235 (251)
T ss_dssp             GGHHHHTTT-CSEEEECHHHHH
T ss_pred             HHHHHHHHh-CCEEEEcHHHcC
Confidence            999999999 999999999997

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.34  E-value=2.8e-06  Score=69.60  Aligned_cols=76  Identities=25%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|.|.++..... .......++.+.++++.+  ++||++.|||++.+++.+++++|||+|.+|+.++.
T Consensus        34 ~~~a~~~~~~Gad~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~  109 (252)
T 1ka9_F           34 VEAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR  109 (252)
T ss_dssp             HHHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEcCCcc-ccCccccHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence            46788999999999998743211 011223455667776655  79999999999999999999999999999998874

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=98.34  E-value=3.2e-06  Score=69.30  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=59.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|.+.+....+.. .+....++.+.++++.+  ++|+++.|||++++++.+++++|||.|.+|+..+.
T Consensus        33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~  108 (253)
T 1thf_D           33 VELGKFYSEIGIDELVFLDITASV-EKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE  108 (253)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCchhh-cCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence            467889999999999987643211 11223455667776554  79999999999999999999999999999998875

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=98.32  E-value=8.3e-06  Score=66.79  Aligned_cols=103  Identities=22%  Similarity=0.144  Sum_probs=71.8

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcC------CCCCccchHHHHH
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGR------QLDYVPASIEALP  110 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~------~~~~~~~~~~~l~  110 (202)
                      .++-+...+.|+++++.++-. .+|.+     ++.+.    ++.+.++|+|+|..|.+-+.      ..+.+..+.+.+.
T Consensus        94 ~g~~~~v~~ei~~v~~a~~~~-~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~  172 (226)
T 1vcv_A           94 SRRWAEVRRDLISVVGAAGGR-VVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAA  172 (226)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCC-CceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHH
Confidence            566777788999999987432 56744     45544    45678999999998753210      0112334444444


Q ss_pred             HHHHH---hCCCcEEEEecCCCCHHHHHHHHHh---CCC----EEEEcH
Q psy16780        111 EIAKA---VGHKVDVYLDGGVRYGTDVFKALAL---GAK----MVFVGR  149 (202)
Q Consensus       111 ~i~~~---~~~~ipiia~GGI~~~~D~~kal~~---GAd----~V~ig~  149 (202)
                      .+++.   ++++++|-++||||+.+|+.+.+.+   ||+    -++..+
T Consensus       173 lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~  221 (226)
T 1vcv_A          173 AIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST  221 (226)
T ss_dssp             HHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred             HHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecCc
Confidence            44443   7778999999999999999999999   999    776554

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=98.31  E-value=5.2e-06  Score=66.66  Aligned_cols=100  Identities=18%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCc------------------------CCC-------
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGG------------------------RQL-------   99 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg------------------------~~~-------   99 (202)
                      .+.++++++.++.|+.+-+- .++ +.++.+.++|+|+|+++...+                        +..       
T Consensus        50 ~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~  129 (220)
T 2fli_A           50 ADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLL  129 (220)
T ss_dssp             HHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGT
T ss_pred             HHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH
Confidence            78999999888888887654 333 457889999999998864211                        000       


Q ss_pred             ---C-----------Cc----cchHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 ---D-----------YV----PASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 ---~-----------~~----~~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                         +           ++    +...+.+.++++...   .++|++++|||+ ++++.+++.+|||+|.+||+++.
T Consensus       130 ~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~  203 (220)
T 2fli_A          130 DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK  203 (220)
T ss_dssp             TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred             hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence               0           01    111233444544331   268999999999 79999999999999999999985

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.28  E-value=8e-06  Score=66.21  Aligned_cols=77  Identities=27%  Similarity=0.277  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ..+.++.+.++|+|++.++...+.. .......+.+.++++.+  ++|+++.||+++.+++.+++++|||+|.++++++.
T Consensus        35 ~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~  111 (253)
T 1h5y_A           35 PVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR  111 (253)
T ss_dssp             HHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence            4578899999999999987532211 11223455677777766  79999999999999999999999999999998774

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=98.27  E-value=1.8e-05  Score=66.05  Aligned_cols=94  Identities=26%  Similarity=0.361  Sum_probs=69.4

Q ss_pred             cccHHHHHHHHHh---cCCCEEEEecc---------CHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHH
Q psy16780         50 TINWSDVTWLKTI---TKLPIVLKGIL---------TAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA  113 (202)
Q Consensus        50 ~~~~~~i~~i~~~---~~~Pv~vK~~~---------~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~  113 (202)
                      +...+.++++++.   .++|+++=.-.         +.+.    ++.+.++|+|+|.++..         .+.+.+++++
T Consensus       121 ~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~~---------~~~e~~~~~~  191 (263)
T 1w8s_A          121 WKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKYT---------GDPKTFSWAV  191 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEECC---------SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcCC---------CCHHHHHHHH
Confidence            3355566666654   38998874223         4443    46678999999998731         2456777777


Q ss_pred             HHhCCCcEEEEecCCC--CHHHHHHHH----HhCCCEEEEcHHHHH
Q psy16780        114 KAVGHKVDVYLDGGVR--YGTDVFKAL----ALGAKMVFVGRPALW  153 (202)
Q Consensus       114 ~~~~~~ipiia~GGI~--~~~D~~kal----~~GAd~V~ig~~~l~  153 (202)
                      +.+ +.+||+++|||+  +.+|+.+.+    .+||+++.+||.++.
T Consensus       192 ~~~-~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~  236 (263)
T 1w8s_A          192 KVA-GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ  236 (263)
T ss_dssp             HHT-TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred             HhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcC
Confidence            766 345999999999  889988877    789999999999875

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=98.25  E-value=2.6e-06  Score=70.92  Aligned_cols=121  Identities=15%  Similarity=0.135  Sum_probs=78.5

Q ss_pred             HhhhccCccccHHHHHHHHHhcCCCEEEEecc------C-HHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780         42 YITSQLDETINWSDVTWLKTITKLPIVLKGIL------T-AEDAKIGVEMGASAIMVSNHG--------------G----   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~------~-~~~a~~l~~aG~d~I~v~~~g--------------g----   96 (202)
                      .+....+.+..++.++++|+.  +|+++=.=.      . ...++.+.++|+|++++-.-.              |    
T Consensus        68 AL~~g~~~~~~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I  145 (252)
T 3tha_A           68 ALDQGVDIHSVFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALI  145 (252)
T ss_dssp             HHHTTCCHHHHHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEEC
T ss_pred             HHHCCCCHHHHHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
Confidence            455666777788888888865  788763211      1 356788999999999874210              0    


Q ss_pred             ------CC-------------C------CC--ccc-h-----HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         97 ------RQ-------------L------DY--VPA-S-----IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        97 ------~~-------------~------~~--~~~-~-----~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                            +.             +      .+  |.. .     .+.+.++++..  ++|++.-+||++++++.++.. +||
T Consensus       146 ~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~-~AD  222 (252)
T 3tha_A          146 TLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRK-VAD  222 (252)
T ss_dssp             EEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHTT-TSS
T ss_pred             EEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHh-cCC
Confidence                  00             0      01  111 1     12344444433  799999999999999987655 699


Q ss_pred             EEEEcHHHHHHhhhcChHHHHHHH
Q psy16780        144 MVFVGRPALWGLAHSGKSGVRKVL  167 (202)
Q Consensus       144 ~V~ig~~~l~~~~~~G~~~v~~~i  167 (202)
                      +|.+||+++..+...+.+...+.+
T Consensus       223 GVIVGSAiVk~i~~~~~~~~~~~~  246 (252)
T 3tha_A          223 GVIVGTSIVKCFKQGNLDIIMKDI  246 (252)
T ss_dssp             EEEECHHHHHHTTSSCHHHHHHHH
T ss_pred             EEEECHHHHHHHHhcCHHHHHHHH
Confidence            999999999876544444333333

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=98.24  E-value=2.2e-06  Score=69.32  Aligned_cols=97  Identities=14%  Similarity=0.185  Sum_probs=63.7

Q ss_pred             HHHHHHHHhcCCCEEEEe--ccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         54 SDVTWLKTITKLPIVLKG--ILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~--~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      +.++.+++. +++..+..  +.|++.++.+.+.|+|++.+...  ++.  .+.......+..+++....++|+++.||| 
T Consensus       100 ~~~~~~~~~-g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~~~~~~~--~g~~~~~~~l~~i~~~~~~~~pi~v~GGI-  175 (218)
T 3jr2_A          100 ACKKVADEL-NGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAEL--AGIGWTTDDLDKMRQLSALGIELSITGGI-  175 (218)
T ss_dssp             HHHHHHHHH-TCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHHH--HTCCSCHHHHHHHHHHHHTTCEEEEESSC-
T ss_pred             HHHHHHHHh-CCccceeeeecCCHHHHHHHHHcCccceeeeecccccc--CCCcCCHHHHHHHHHHhCCCCCEEEECCC-
Confidence            455555543 66655432  36788889999999999876321  111  11111223334443332237999999999 


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +.+++.+++.+|||++.+||++..+
T Consensus       176 ~~~~~~~~~~aGAd~vvvGsaI~~a  200 (218)
T 3jr2_A          176 VPEDIYLFEGIKTKTFIAGRALAGA  200 (218)
T ss_dssp             CGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred             CHHHHHHHHHcCCCEEEEchhhcCC
Confidence            5899999999999999999998753

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=98.24  E-value=1.6e-05  Score=65.92  Aligned_cols=116  Identities=16%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             cHHHHHHHHHhc-CCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCc------------------------CCC-----
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGG------------------------RQL-----   99 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg------------------------~~~-----   99 (202)
                      -.+.++++|+.+ ++|+-+.+- .++ ..++.+.++|+|.|++..-..                        |..     
T Consensus        73 G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~  152 (246)
T 3inp_A           73 GPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKY  152 (246)
T ss_dssp             CHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTT
T ss_pred             CHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHH
Confidence            467999999998 899998874 333 567888999999999963110                        110     


Q ss_pred             -----C-----------Cc----cchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        100 -----D-----------YV----PASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       100 -----~-----------~~----~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                           |           ++    +.+++-++++++..   +.+++|.++|||+ .+.+.++.++|||.+.+||++..+  
T Consensus       153 ~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a--  229 (246)
T 3inp_A          153 VESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNS--  229 (246)
T ss_dssp             TGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTS--
T ss_pred             HHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCC--
Confidence                 0           11    23445555555443   2368999999998 688999999999999999987642  


Q ss_pred             hcChHHHHHHHHHHHHHH
Q psy16780        157 HSGKSGVRKVLDILINEF  174 (202)
Q Consensus       157 ~~G~~~v~~~i~~l~~~L  174 (202)
                       ..   ..+.++.|++.+
T Consensus       230 -~d---p~~~i~~l~~~i  243 (246)
T 3inp_A          230 -DS---YKQTIDKMRDEL  243 (246)
T ss_dssp             -SC---HHHHHHHHHHHH
T ss_pred             -CC---HHHHHHHHHHHH
Confidence             22   234455555544

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.23  E-value=9.8e-06  Score=66.01  Aligned_cols=75  Identities=29%  Similarity=0.262  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|.+.+....+.. .+.... ..+.++++.+  ++|+++.|||++++++.+++++|||.|.+|+..+.
T Consensus        34 ~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~  108 (244)
T 2y88_A           34 VDAALGWQRDGAEWIHLVDLDAAF-GRGSNH-ELLAEVVGKL--DVQVELSGGIRDDESLAAALATGCARVNVGTAALE  108 (244)
T ss_dssp             HHHHHHHHHTTCSEEEEEEHHHHT-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEcCcccc-cCCChH-HHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence            477889999999999997532211 112334 7778887776  89999999999999999999999999999998764

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=98.21  E-value=1.4e-05  Score=67.94  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhcCC-CEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         53 WSDVTWLKTITKL-PIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~-Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+.++.+++..+- ++++ ++-+.++++.+.++|+|+|.+++          .+.+.+.++++.++++++|.++||| +.
T Consensus       196 ~~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~----------~~~e~l~~~v~~~~~~~~I~ASGGI-t~  263 (296)
T 1qap_A          196 RQAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN----------FNTDQMREAVKRVNGQARLEVSGNV-TA  263 (296)
T ss_dssp             HHHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS----------CCHHHHHHHHHTTCTTCCEEECCCS-CH
T ss_pred             HHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEECCC-CH
Confidence            3467777777643 5666 56778999999999999999976          2446666766667668999999999 99


Q ss_pred             HHHHHHHHhCCCEEEEcHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~  151 (202)
                      +.+.+....|+|.+.+|+..
T Consensus       264 ~~i~~~a~~GvD~isvGsli  283 (296)
T 1qap_A          264 ETLREFAETGVDFISVGALT  283 (296)
T ss_dssp             HHHHHHHHTTCSEEECSHHH
T ss_pred             HHHHHHHHcCCCEEEEeHHH
Confidence            99999999999999999844

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=98.20  E-value=5.2e-06  Score=72.28  Aligned_cols=100  Identities=15%  Similarity=0.001  Sum_probs=69.4

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEecc-----------C----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGIL-----------T----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~~-----------~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      |..+++++||+.+ +-+|.+|+..           .    ...++.+.+.|++.+.++...-...............+++
T Consensus       204 f~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~  283 (358)
T 4a3u_A          204 LLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRK  283 (358)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHHH
Confidence            5678999999987 4568899861           1    1235677889999999876421111111111123345555


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ..  ..||+ .||+.+++++.++++.| ||+|++||+|+.
T Consensus       284 ~~--~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~la  320 (358)
T 4a3u_A          284 VF--KPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIG  320 (358)
T ss_dssp             HC--CSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHH
T ss_pred             hc--CCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHh
Confidence            55  55665 57889999999999999 999999999996

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.19  E-value=6.6e-06  Score=72.21  Aligned_cols=98  Identities=18%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc--CHHHHHHHHHcCCcEEEeeccCcCCCCCcc-chHHHHHHHHHHhCCCcEEEE
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL--TAEDAKIGVEMGASAIMVSNHGGRQLDYVP-ASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~--~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipiia  124 (202)
                      |++...+.++++++. ++|++++...  ..+.++.+.++|+|.+.+++....+....+ .++..+.++++..  ++||++
T Consensus       140 d~~~~~~~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~  216 (393)
T 2qr6_A          140 DTELLSERIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL--DVPVIA  216 (393)
T ss_dssp             CHHHHHHHHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC--SSCEEE
T ss_pred             CHHHHHHHHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc--CCCEEE
Confidence            777777788888876 8999998763  356678888999999988643211111111 1455567777776  799999


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                       ||+.+++|+.+++.+|||+|.+|+
T Consensus       217 -ggi~t~e~a~~~~~~Gad~i~vg~  240 (393)
T 2qr6_A          217 -GGVNDYTTALHMMRTGAVGIIVGG  240 (393)
T ss_dssp             -ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred             -CCcCCHHHHHHHHHcCCCEEEECC
Confidence             999999999999999999999976

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.17  E-value=1.3e-05  Score=65.49  Aligned_cols=75  Identities=27%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|.+.+....+.. .+.... +.+.++++..  ++|++..|||++++++.+++.+|||.|.+|+..+.
T Consensus        35 ~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~  109 (244)
T 1vzw_A           35 LEAALAWQRSGAEWLHLVDLDAAF-GTGDNR-ALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE  109 (244)
T ss_dssp             HHHHHHHHHTTCSEEEEEEHHHHH-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEecCchhh-cCCChH-HHHHHHHHhc--CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhh
Confidence            466888999999999997532211 112344 6678887776  89999999999999999999999999999998764

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=98.16  E-value=7e-06  Score=69.02  Aligned_cols=88  Identities=22%  Similarity=0.118  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC---CCcEEEEecC
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG---HKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipiia~GG  127 (202)
                      .+.++.+++..+  +++.+ .+.+.++++.+.++|+|+|.+++.          +.+.++++++.++   +++||.++||
T Consensus       169 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~~~~i~AsGG  237 (273)
T 2b7n_A          169 KSFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDNL----------SVLETKEIAAYRDAHYPFVLLEASGN  237 (273)
T ss_dssp             HHHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred             HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCcEEEEECC
Confidence            457888888764  46666 667889999999999999999763          1234444333332   3599999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      | +.+.+.+..++|||.+.+|+.+.
T Consensus       238 I-~~~ni~~~~~aGaD~i~vGs~i~  261 (273)
T 2b7n_A          238 I-SLESINAYAKSGVDAISVGALIH  261 (273)
T ss_dssp             C-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred             C-CHHHHHHHHHcCCcEEEEcHHhc
Confidence            9 89999999999999999999854

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=98.15  E-value=2.4e-06  Score=88.18  Aligned_cols=91  Identities=10%  Similarity=0.085  Sum_probs=65.5

Q ss_pred             hcCCCEEEEeccCH---HHHHHHHHcCCcEE---Eeecc--CcCC-C-CCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         62 ITKLPIVLKGILTA---EDAKIGVEMGASAI---MVSNH--GGRQ-L-DYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        62 ~~~~Pv~vK~~~~~---~~a~~l~~aG~d~I---~v~~~--gg~~-~-~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      ..+++++.....+.   ..+..+.++|+|++   ++.|.  ||.. . +-..++...++++++.+  ++|||+.|||.++
T Consensus       697 ~lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~--~ipviaaGGi~dg  774 (2051)
T 2uv8_G          697 TLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHP--NIMLIFGSGFGSA  774 (2051)
T ss_dssp             HSCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCT--TBCCEEESSCCSH
T ss_pred             HcCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcC--CceEEEeCCCCCH
Confidence            34888886544333   44577788899994   33332  3331 1 11233444567777766  8999999999999


Q ss_pred             HHHHHHH-----------HhCCCEEEEcHHHHHH
Q psy16780        132 TDVFKAL-----------ALGAKMVFVGRPALWG  154 (202)
Q Consensus       132 ~D~~kal-----------~~GAd~V~ig~~~l~~  154 (202)
                      .+++.+|           ++|||+|+||+.|+..
T Consensus       775 ~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t  808 (2051)
T 2uv8_G          775 DDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIA  808 (2051)
T ss_dssp             HHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTS
T ss_pred             HHHHHHHccccccccCccCCCCceeeechHHHhC
Confidence            9999999           8999999999999853

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=98.14  E-value=2.9e-06  Score=69.40  Aligned_cols=75  Identities=19%  Similarity=0.179  Sum_probs=59.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|.|.++...... .....+++.+.+++ .+  ++|+++.|||++.+++.+++++|||.|.+|+.++.
T Consensus        33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~--~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~  107 (241)
T 1qo2_A           33 VELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE  107 (241)
T ss_dssp             HHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEecccccc-cCCchhHHHHHHHH-hc--CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence            477899999999999997521100 01234566777776 55  79999999999999999999999999999998874

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=98.13  E-value=1e-05  Score=66.44  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=72.6

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      |.+..++++..++. ++|++. ++.|+.++..+.++|+|.|.+.-..  ..    ...+.++.++..+ +++|+++.|||
T Consensus       113 P~~~~~vi~~~~~~-gi~~ip-Gv~TptEi~~A~~~Gad~vK~FPa~--~~----gG~~~lkal~~p~-p~ip~~ptGGI  183 (232)
T 4e38_A          113 PGFNPNTVRACQEI-GIDIVP-GVNNPSTVEAALEMGLTTLKFFPAE--AS----GGISMVKSLVGPY-GDIRLMPTGGI  183 (232)
T ss_dssp             SSCCHHHHHHHHHH-TCEEEC-EECSHHHHHHHHHTTCCEEEECSTT--TT----THHHHHHHHHTTC-TTCEEEEBSSC
T ss_pred             CCCCHHHHHHHHHc-CCCEEc-CCCCHHHHHHHHHcCCCEEEECcCc--cc----cCHHHHHHHHHHh-cCCCeeeEcCC
Confidence            44566677776654 899887 4679999999999999999984421  10    1246677776555 47999999999


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      . .+++.+.+++||.++.+|+.+.
T Consensus       184 ~-~~n~~~~l~aGa~~~vgGs~l~  206 (232)
T 4e38_A          184 T-PSNIDNYLAIPQVLACGGTWMV  206 (232)
T ss_dssp             C-TTTHHHHHTSTTBCCEEECGGG
T ss_pred             C-HHHHHHHHHCCCeEEEECchhc
Confidence            5 8999999999999999898765

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=98.12  E-value=1.5e-05  Score=64.66  Aligned_cols=102  Identities=20%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeecc--CcCC----------------------------
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNH--GGRQ----------------------------   98 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~--gg~~----------------------------   98 (202)
                      ...+.++++++.++.|+.+-.. .++ +.++.+.++|+|+|+++..  ....                            
T Consensus        55 ~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~  134 (230)
T 1rpx_A           55 IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI  134 (230)
T ss_dssp             CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGG
T ss_pred             cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Confidence            3478999999888788777654 344 4688889999999987654  2100                            


Q ss_pred             --C----C-----------Ccc----chHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         99 --L----D-----------YVP----ASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        99 --~----~-----------~~~----~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                        .    +           ++.    ...+.+.++++.+.   .++|+++.|||+ ++++.+++.+|||+|.+||++..
T Consensus       135 ~~~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~  212 (230)
T 1rpx_A          135 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  212 (230)
T ss_dssp             TTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred             HHHHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence              0    0           011    11233444544331   269999999998 78998999999999999999874

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=98.11  E-value=1e-05  Score=68.11  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++...+.|.+.|.+...+      .+...+.+.++++.+.+.+||++.|||+|.+|+.+++.+|||.|.+||+++.
T Consensus       192 a~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~  261 (286)
T 3vk5_A          192 LHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ  261 (286)
T ss_dssp             HHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSS
T ss_pred             HHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence            344567788888887532      2446678888888764479999999999999999999999999999999874

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=98.11  E-value=8.1e-06  Score=68.20  Aligned_cols=94  Identities=26%  Similarity=0.270  Sum_probs=67.1

Q ss_pred             ccCccccHHHHHHHHHhcC-CCEEEEecc------CHH----HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         46 QLDETINWSDVTWLKTITK-LPIVLKGIL------TAE----DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~------~~~----~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      .++-+...+.|+++++.++ .+..+|.++      +.+    .++.+.++|+|+|..|.+-    ..+..+.+.+..+++
T Consensus       113 ~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTSTGf----~~~gAt~e~v~lm~~  188 (260)
T 1p1x_A          113 AGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGK----VAVNATPESARIMME  188 (260)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSC----SSCCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHH
Confidence            5677778889999998874 245678762      344    2456789999999987531    112345554444444


Q ss_pred             H-----hCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780        115 A-----VGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus       115 ~-----~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                      .     ++.+++|-++||||+.+|+.+.+.+||+
T Consensus       189 ~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~  222 (260)
T 1p1x_A          189 VIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE  222 (260)
T ss_dssp             HHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence            3     4568999999999999999999999876

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=98.11  E-value=1.2e-05  Score=67.77  Aligned_cols=93  Identities=17%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             ccCcc---ccHHHHHHHHHhcCCCEEEEecc------CHH----HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780         46 QLDET---INWSDVTWLKTITKLPIVLKGIL------TAE----DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI  112 (202)
Q Consensus        46 ~~d~~---~~~~~i~~i~~~~~~Pv~vK~~~------~~~----~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i  112 (202)
                      .++-+   ...+.|+++++.++ +..+|.++      +.+    .++.+.++|+|+|..+.+-    ..+..+.+.+..+
T Consensus       134 sg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf----~~~gAT~edv~lm  208 (281)
T 2a4a_A          134 ENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGK----VQINATPSSVEYI  208 (281)
T ss_dssp             HSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSC----SSCCCCHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHH
Confidence            45556   67788999998875 35678762      334    2466789999999987531    1122344443333


Q ss_pred             HHHh----------CCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780        113 AKAV----------GHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus       113 ~~~~----------~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                      ++.+          +.+++|-++|||||.+|+.+.+.+||+
T Consensus       209 ~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~  249 (281)
T 2a4a_A          209 IKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR  249 (281)
T ss_dssp             HHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence            3333          668999999999999999999999886

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=98.10  E-value=2.3e-05  Score=63.99  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             cccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      ....+.++..++ .+.|+++. +.|++++..+.+.|+|+|.+..  ...    ....+.+++++..+ +++|+++.||| 
T Consensus        97 ~~d~~v~~~ar~-~g~~~i~G-v~t~~e~~~A~~~Gad~vk~Fp--a~~----~gG~~~lk~l~~~~-~~ipvvaiGGI-  166 (224)
T 1vhc_A           97 GLNPKIVKLCQD-LNFPITPG-VNNPMAIEIALEMGISAVKFFP--AEA----SGGVKMIKALLGPY-AQLQIMPTGGI-  166 (224)
T ss_dssp             SCCHHHHHHHHH-TTCCEECE-ECSHHHHHHHHHTTCCEEEETT--TTT----TTHHHHHHHHHTTT-TTCEEEEBSSC-
T ss_pred             CCCHHHHHHHHH-hCCCEEec-cCCHHHHHHHHHCCCCEEEEee--Ccc----ccCHHHHHHHHhhC-CCCeEEEECCc-
Confidence            344556777777 78998885 8889999999999999999933  110    11245677776555 36999999999 


Q ss_pred             CHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~-GAd~V~ig~~~l~  153 (202)
                      +.+++.+.+++ |+++|. ||.+..
T Consensus       167 ~~~N~~~~l~agga~~v~-gS~i~~  190 (224)
T 1vhc_A          167 GLHNIRDYLAIPNIVACG-GSWFVE  190 (224)
T ss_dssp             CTTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred             CHHHHHHHHhcCCCEEEE-EchhcC
Confidence            55889999998 899999 887764

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=98.09  E-value=8e-05  Score=60.44  Aligned_cols=114  Identities=17%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHc--CCcEEEeec-cCcC-CCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEM--GASAIMVSN-HGGR-QLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~a--G~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      .+.++.+++. ++++++-..  ...+..+...+.  ++|+|.+.. ++|+ .....+...+.+.++++.. .++|+++.|
T Consensus       103 ~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~-~~~pi~v~G  180 (228)
T 1h1y_A          103 QELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY-PSLDIEVDG  180 (228)
T ss_dssp             HHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTSEEEEES
T ss_pred             HHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc-CCCCEEEEC
Confidence            4567777654 677775542  223445666665  999998854 2221 1112233455667776654 379999999


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      ||.. +++.+++.+|||.+.+||+++.+   ..   ..+.++.+++.++
T Consensus       181 GI~~-~ni~~~~~aGaD~vvvGsai~~~---~d---~~~~~~~l~~~~~  222 (228)
T 1h1y_A          181 GLGP-STIDVAASAGANCIVAGSSIFGA---AE---PGEVISALRKSVE  222 (228)
T ss_dssp             SCST-TTHHHHHHHTCCEEEESHHHHTS---SC---HHHHHHHHHHHHH
T ss_pred             CcCH-HHHHHHHHcCCCEEEECHHHHCC---CC---HHHHHHHHHHHHH
Confidence            9987 88989999999999999998742   12   3344555555443

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=98.07  E-value=2.8e-05  Score=63.93  Aligned_cols=90  Identities=20%  Similarity=0.263  Sum_probs=63.6

Q ss_pred             ccHHHHHHHHHhc---CCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCC-ccchHHHHHH--HHHH
Q psy16780         51 INWSDVTWLKTIT---KLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDY-VPASIEALPE--IAKA  115 (202)
Q Consensus        51 ~~~~~i~~i~~~~---~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~-~~~~~~~l~~--i~~~  115 (202)
                      ...+.|.++++.+   +.|+  |.+     ++.+.    ++.+.++|+|+|..+.+.    .. +..+.+.+..  +++.
T Consensus       117 ~v~~ei~~v~~a~~~~g~~l--KvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~----~~~~gAt~~dv~l~~m~~~  190 (234)
T 1n7k_A          117 AVYREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGV----YTKGGDPVTVFRLASLAKP  190 (234)
T ss_dssp             HHHHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSS----SCCCCSHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhhcCCeE--EEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCCHHHHHHHHHHHH
Confidence            5566777887765   3554  755     35444    466789999999987521    11 2345555454  6666


Q ss_pred             hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        116 VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       116 ~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      ++  +||.++|||++.+|+.+.+.+||+-++..
T Consensus       191 v~--v~VKaaGGirt~~~al~~i~aGa~RiG~S  221 (234)
T 1n7k_A          191 LG--MGVKASGGIRSGIDAVLAVGAGADIIGTS  221 (234)
T ss_dssp             GT--CEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred             HC--CCEEEecCCCCHHHHHHHHHcCccccchH
Confidence            64  99999999999999999999999955544

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=98.05  E-value=1.1e-05  Score=66.03  Aligned_cols=103  Identities=18%  Similarity=0.237  Sum_probs=72.6

Q ss_pred             cccHHHHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeecc--CcCC---------------------------
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNH--GGRQ---------------------------   98 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~--gg~~---------------------------   98 (202)
                      .+..+.++++|+.++.|+.+-+- .++ ..++.+.++|+|+|+++.-  ....                           
T Consensus        48 ~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~  127 (230)
T 1tqj_A           48 TIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDF  127 (230)
T ss_dssp             CBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGG
T ss_pred             hhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHH
Confidence            34468999999988888875443 343 3578889999999988643  1100                           


Q ss_pred             -------CC-----------Cc----cchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         99 -------LD-----------YV----PASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        99 -------~~-----------~~----~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                             .|           ++    +...+.+.++++..   +.++||.+.|||.. +++.++..+|||.+.+||+++.
T Consensus       128 ~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~  206 (230)
T 1tqj_A          128 LEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN  206 (230)
T ss_dssp             GTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred             HHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence                   00           11    22345566665544   22699999999998 8899999999999999999874

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=98.05  E-value=7.5e-06  Score=67.64  Aligned_cols=76  Identities=12%  Similarity=0.073  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ..+.++.+.++|++.|.++.-.... .......+.+.++++.+  ++|+++.|||++.+++.+++.+|||+|.+|+.++
T Consensus        32 ~~~~a~~~~~~Ga~~i~v~d~~~~~-~~~g~~~~~i~~i~~~~--~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~  107 (266)
T 2w6r_A           32 LRDWVVEVEKRGAGEILLTSIDRDG-TKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH  107 (266)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETTTSS-CSSCCCHHHHHHHGGGC--CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred             HHHHHHHHHHCCCCEEEEEecCccc-CCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence            3577899999999999996532111 11224567777777665  7999999999999999999999999999999877

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=98.03  E-value=6.3e-05  Score=61.63  Aligned_cols=77  Identities=13%  Similarity=0.180  Sum_probs=57.6

Q ss_pred             HHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcCh
Q psy16780         81 GVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK  160 (202)
Q Consensus        81 l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~  160 (202)
                      +.-.|.+.|.+.+ .|+.     .+.+.+.++++.+. ++|++.-|||++++++.+++ .|||.|.+|+++..     .+
T Consensus       149 a~~~g~~~VYld~-sG~~-----~~~~~i~~i~~~~~-~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~-----~p  215 (228)
T 3vzx_A          149 SELLQLPIFYLEY-SGVL-----GDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE-----DF  215 (228)
T ss_dssp             HHHTTCSEEEEEC-TTSC-----CCHHHHHHHHHHCS-SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH-----CH
T ss_pred             HHHcCCCEEEecC-CCCc-----CCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc-----CH
Confidence            3445688898877 3431     25777888877652 59999999999999999987 79999999999986     45


Q ss_pred             HHHHHHHHHH
Q psy16780        161 SGVRKVLDIL  170 (202)
Q Consensus       161 ~~v~~~i~~l  170 (202)
                      +-+.++++.+
T Consensus       216 ~~~~~~v~a~  225 (228)
T 3vzx_A          216 DRALKTVAAV  225 (228)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=98.01  E-value=6.7e-05  Score=63.43  Aligned_cols=88  Identities=25%  Similarity=0.289  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++..|+..+  .+|.+ .+.+.++++.+.++|+|+|.+++.          +.+.++++.+.+++++|+.++||| +
T Consensus       183 ~~av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~AsGGI-t  250 (286)
T 1x1o_A          183 GEAVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEASGNM-T  250 (286)
T ss_dssp             HHHHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEEESSC-C
T ss_pred             HHHHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCC-C
Confidence            346777777763  46666 667899999999999999999763          233455555556567999999998 5


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.+.+..++|+|++.+|+...
T Consensus       251 ~eni~~~a~tGvD~IsVgs~~~  272 (286)
T 1x1o_A          251 LERAKAAAEAGVDYVSVGALTH  272 (286)
T ss_dssp             HHHHHHHHHHTCSEEECTHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcHHHc
Confidence            8999999999999999988543

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=98.00  E-value=1.5e-05  Score=67.87  Aligned_cols=88  Identities=17%  Similarity=0.154  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GG  127 (202)
                      .+.++.+++..+  .++++ ++.+.++++.+.++|+|+|.+++.          +.+.+.++++.+   .+++||.++||
T Consensus       184 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~~~~I~ASGG  252 (299)
T 2jbm_A          184 EKAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNF----------KPEELHPTATVLKAQFPSVAVEASGG  252 (299)
T ss_dssp             HHHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSEEEEESS
T ss_pred             HHHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeeEEEECC
Confidence            346677777664  56776 677889999999999999999763          134444433333   23599999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      | +.+.+.+..++|||.+.+|+.+.
T Consensus       253 I-t~~ni~~~~~aGaD~i~vGs~i~  276 (299)
T 2jbm_A          253 I-TLDNLPQFCGPHIDVISMGMLTQ  276 (299)
T ss_dssp             C-CTTTHHHHCCTTCCEEECTHHHH
T ss_pred             C-CHHHHHHHHHCCCCEEEEChhhc
Confidence            9 99999999999999999999553

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=97.99  E-value=7e-05  Score=63.61  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             cHHHHHHHHHh---cCCCEEEEec------cCHH----HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         52 NWSDVTWLKTI---TKLPIVLKGI------LTAE----DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        52 ~~~~i~~i~~~---~~~Pv~vK~~------~~~~----~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      ..+.+.++++.   .++|+++=..      .+++    .++.+.++|+|+|.++-. +          +.+.++++..  
T Consensus       156 ~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t-~----------e~~~~vv~~~--  222 (295)
T 3glc_A          156 SIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYV-E----------KGFERIVAGC--  222 (295)
T ss_dssp             HHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECC-T----------TTHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCC-H----------HHHHHHHHhC--
Confidence            44455566554   4799987211      2333    457788999999988621 1          2356665554  


Q ss_pred             CcEEEEecCCCC-HHH----HHHHHHhCCCEEEEcHHHHH
Q psy16780        119 KVDVYLDGGVRY-GTD----VFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       119 ~ipiia~GGI~~-~~D----~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++||+++||+.. .+|    +.+++.+||+++.+||.++.
T Consensus       223 ~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q  262 (295)
T 3glc_A          223 PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQ  262 (295)
T ss_dssp             SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhc
Confidence            799999999985 433    44666899999999999874

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=97.97  E-value=4.1e-05  Score=60.77  Aligned_cols=74  Identities=14%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             HHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.++.+...|+..+.+.+.  .|+.  .+ ..++.+.++....  ++|+|+.||+.+++|+.+++..||++|++|++++
T Consensus       133 ~~~i~~~~~~~~~~vli~~~~~~g~~--~g-~~~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~  207 (237)
T 3cwo_X          133 RDWVVEVEKRGAGEILLTSIDRDGTK--SG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFH  207 (237)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTTTTCC--SC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             HHHHHHHhhcCCCeEEEEecCCCCcc--cc-ccHHHHHHHHHhc--CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHH
Confidence            36678888889987776552  2221  12 2366677776554  7999999999999999999999999999999997


Q ss_pred             H
Q psy16780        153 W  153 (202)
Q Consensus       153 ~  153 (202)
                      .
T Consensus       208 ~  208 (237)
T 3cwo_X          208 F  208 (237)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=97.95  E-value=6.4e-05  Score=63.52  Aligned_cols=86  Identities=16%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             HHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         54 SDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +.+++.|+.. ..|+.| ++-+.++++.+.++|+|.|.++|.          +.+.++++.+.+++++++.+|||| +.+
T Consensus       187 ~Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn~----------~~~~l~~av~~~~~~v~ieaSGGI-t~~  254 (287)
T 3tqv_A          187 KAVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDNF----------SGEDIDIAVSIARGKVALEVSGNI-DRN  254 (287)
T ss_dssp             HHHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTTCEEEEESSC-CTT
T ss_pred             HHHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhhcCCceEEEECCC-CHH
Confidence            4566666653 578877 778899999999999999999873          335566666666678999999999 678


Q ss_pred             HHHHHHHhCCCEEEEcHHH
Q psy16780        133 DVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~  151 (202)
                      .+.+....|+|.+.+|+..
T Consensus       255 ~i~~~a~tGVD~IsvGalt  273 (287)
T 3tqv_A          255 SIVAIAKTGVDFISVGAIT  273 (287)
T ss_dssp             THHHHHTTTCSEEECSHHH
T ss_pred             HHHHHHHcCCCEEEEChhh
Confidence            8888888999999999754

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=97.90  E-value=0.00032  Score=58.94  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=66.3

Q ss_pred             eccCHHHHHHHHHcCCcEEEeecc---CcCCCCCc---cch-HHHHHHH---HHHhCCCcEEEEec-CCCCHHHHHHHHH
Q psy16780         71 GILTAEDAKIGVEMGASAIMVSNH---GGRQLDYV---PAS-IEALPEI---AKAVGHKVDVYLDG-GVRYGTDVFKALA  139 (202)
Q Consensus        71 ~~~~~~~a~~l~~aG~d~I~v~~~---gg~~~~~~---~~~-~~~l~~i---~~~~~~~ipiia~G-GI~~~~D~~kal~  139 (202)
                      .+.++++++.+.++|+|.|.+.-.   +|.-..+.   ... .+.+.++   .+.+++++.|++-| ||.+++|+..++.
T Consensus       169 ~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~  248 (286)
T 2p10_A          169 YVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILD  248 (286)
T ss_dssp             EECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHh
Confidence            458999999999999999998542   11111111   111 2233333   34456778777766 9999999999999


Q ss_pred             h--CCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        140 L--GAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       140 ~--GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      +  |++++..+|.+.+.      + .+..+..+.+.++
T Consensus       249 ~t~G~~G~~gASsier~------p-~e~ai~~~~~~fk  279 (286)
T 2p10_A          249 SCQGCHGFYGASSMERL------P-AEEAIRSQTLAFK  279 (286)
T ss_dssp             HCTTCCEEEESHHHHHH------H-HHHHHHHHHHHHH
T ss_pred             cCCCccEEEeehhhhcC------C-HHHHHHHHHHHHH
Confidence            8  99999999999874      2 4455555555544

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.89  E-value=2.7e-05  Score=62.58  Aligned_cols=80  Identities=18%  Similarity=0.041  Sum_probs=58.3

Q ss_pred             ccCHHHHHHHHHcCCcEEEeeccCcCC---CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         72 ILTAEDAKIGVEMGASAIMVSNHGGRQ---LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        72 ~~~~~~a~~l~~aG~d~I~v~~~gg~~---~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+++++..+. .|+|+|.++.-..+.   ..+.+..++.+.++++.+..++|+++.|||. ++++.+++.+||++|.++
T Consensus        95 ~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~  172 (210)
T 3ceu_A           95 CHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVL  172 (210)
T ss_dssp             ECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEES
T ss_pred             cCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEh
Confidence            36788888887 999999875421111   1112335667777766521379999999998 899999999999999999


Q ss_pred             HHHHH
Q psy16780        149 RPALW  153 (202)
Q Consensus       149 ~~~l~  153 (202)
                      |.+..
T Consensus       173 s~i~~  177 (210)
T 3ceu_A          173 GDLWN  177 (210)
T ss_dssp             HHHHT
T ss_pred             HHhHc
Confidence            99974

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=97.88  E-value=9.6e-05  Score=62.72  Aligned_cols=85  Identities=15%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             HHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         54 SDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +.++++|+.. ..|+.| ++-+.++++.++++|+|.|-++|.          +.+.++++.+.+++++.+.+|||| +.+
T Consensus       196 ~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn~----------s~~~l~~av~~~~~~v~leaSGGI-t~~  263 (300)
T 3l0g_A          196 LAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDNM----------SISEIKKAVDIVNGKSVLEVSGCV-NIR  263 (300)
T ss_dssp             HHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSC-CTT
T ss_pred             HHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCceEEEEECCC-CHH
Confidence            4667777664 467666 678899999999999999999873          345666666666778999999998 667


Q ss_pred             HHHHHHHhCCCEEEEcHH
Q psy16780        133 DVFKALALGAKMVFVGRP  150 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~  150 (202)
                      .+.+..+.|+|.+.+|+.
T Consensus       264 ~i~~~A~tGVD~IsvGal  281 (300)
T 3l0g_A          264 NVRNIALTGVDYISIGCI  281 (300)
T ss_dssp             THHHHHTTTCSEEECGGG
T ss_pred             HHHHHHHcCCCEEEeCcc
Confidence            888888899999999964

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=97.88  E-value=9.3e-05  Score=59.92  Aligned_cols=90  Identities=19%  Similarity=0.203  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      .+.++. ++..+.|++.. +.|++++..+.+.|+|+|.+..  ...    ....+.+..++..+ +++|+++.|||. .+
T Consensus        99 ~~v~~~-~~~~g~~~i~G-~~t~~e~~~A~~~Gad~v~~Fp--a~~----~gG~~~lk~i~~~~-~~ipvvaiGGI~-~~  168 (214)
T 1wbh_A           99 EPLLKA-ATEGTIPLIPG-ISTVSELMLGMDYGLKEFKFFP--AEA----NGGVKALQAIAGPF-SQVRFCPTGGIS-PA  168 (214)
T ss_dssp             HHHHHH-HHHSSSCEEEE-ESSHHHHHHHHHTTCCEEEETT--TTT----TTHHHHHHHHHTTC-TTCEEEEBSSCC-TT
T ss_pred             HHHHHH-HHHhCCCEEEe-cCCHHHHHHHHHCCCCEEEEec--Ccc----ccCHHHHHHHhhhC-CCCeEEEECCCC-HH
Confidence            334444 44578898885 8889999999999999999932  110    01245667776554 379999999994 58


Q ss_pred             HHHHHHHh-CCCEEEEcHHHHH
Q psy16780        133 DVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus       133 D~~kal~~-GAd~V~ig~~~l~  153 (202)
                      ++.+.+++ |+++|. ||.+..
T Consensus       169 n~~~~l~agg~~~v~-gS~i~~  189 (214)
T 1wbh_A          169 NYRDYLALKSVLCIG-GSWLVP  189 (214)
T ss_dssp             THHHHHTSTTBSCEE-EGGGSC
T ss_pred             HHHHHHhcCCCeEEE-eccccC
Confidence            89999998 899999 887764

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=97.85  E-value=8.1e-05  Score=59.05  Aligned_cols=93  Identities=17%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             HHHHHHHhcCCCEEEEec-c-CHHH-HHHHHHcCCcEEEeec-cCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         55 DVTWLKTITKLPIVLKGI-L-TAED-AKIGVEMGASAIMVSN-HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~-~-~~~~-a~~l~~aG~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .++.+++ .+.++.+-.. . ++++ ++.+.+.|+|.|.+.. ..+......+.. +.++++++.   ++|+++.|||+ 
T Consensus        95 ~~~~~~~-~g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~-~~i~~~~~~---~~pi~v~GGI~-  168 (207)
T 3ajx_A           95 AVKAAQA-HNKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLN-GLLAAGEKA---RVPFSVAGGVK-  168 (207)
T ss_dssp             HHHHHHH-HTCEEEEECTTCSSHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTH-HHHHHHHHH---TSCEEEESSCC-
T ss_pred             HHHHHHH-cCCceEEEEecCCChHHHHHHHHHhCCCEEEEEecccccccCCCchH-HHHHHhhCC---CCCEEEECCcC-
Confidence            3344433 2666533221 1 5555 6777788999984432 110000001112 444444332   68999999998 


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++++.+++++|||+|.+||+++.
T Consensus       169 ~~~~~~~~~aGad~vvvGsaI~~  191 (207)
T 3ajx_A          169 VATIPAVQKAGAEVAVAGGAIYG  191 (207)
T ss_dssp             GGGHHHHHHTTCSEEEESHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEeeeccC
Confidence            78899999999999999999875

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=97.85  E-value=1.7e-05  Score=67.30  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC------cEEEE
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK------VDVYL  124 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~------ipiia  124 (202)
                      .+.++.+++..+  +++++ ++.+.++++.+.++|+|+|.+++.+          .+.+.++++.++.+      +||.+
T Consensus       186 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~~~v~I~A  254 (294)
T 3c2e_A          186 TNAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGKKHFLLEC  254 (294)
T ss_dssp             HHHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC-------------------------------CCEEEE
T ss_pred             HHHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCCCCeEEEE
Confidence            346777777664  56776 6667789999999999999987631          23344444444333      99999


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      +||| +.+.+.+...+|+|.+.+|+..
T Consensus       255 SGGI-t~~ni~~~~~~GvD~i~vGs~i  280 (294)
T 3c2e_A          255 SGGL-NLDNLEEYLCDDIDIYSTSSIH  280 (294)
T ss_dssp             ECCC-CC------CCCSCSEEECGGGT
T ss_pred             ECCC-CHHHHHHHHHcCCCEEEEechh
Confidence            9999 9999999999999999999864

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=97.84  E-value=0.0002  Score=61.35  Aligned_cols=85  Identities=19%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             HHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         54 SDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +.+++.++.. ..|+.| ++-+.++++.++++|+|.|.+++.          +.+.++++++.+++++++.+||||. .+
T Consensus       220 ~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaSGGIt-~~  287 (320)
T 3paj_A          220 QAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENSGNIT-LD  287 (320)
T ss_dssp             HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSCC-HH
T ss_pred             HHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCCC-HH
Confidence            4667777665 356766 678899999999999999999773          3456677666676789999999984 78


Q ss_pred             HHHHHHHhCCCEEEEcHH
Q psy16780        133 DVFKALALGAKMVFVGRP  150 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~  150 (202)
                      .+.+..+.|+|.+.+|+.
T Consensus       288 ~I~~~a~tGVD~isvGal  305 (320)
T 3paj_A          288 NLKECAETGVDYISVGAL  305 (320)
T ss_dssp             HHHHHHTTTCSEEECTHH
T ss_pred             HHHHHHHcCCCEEEECce
Confidence            888888899999999984

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=97.84  E-value=9.3e-05  Score=62.85  Aligned_cols=85  Identities=13%  Similarity=0.283  Sum_probs=65.7

Q ss_pred             HHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         54 SDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +.+++.++.. ..|+.| ++-+.++++.+.++|+|.|.++|.          +.+.++++.+.+.+++++.+|||| +.+
T Consensus       198 ~Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn~----------~~~~l~~av~~i~~~v~ieaSGGI-~~~  265 (298)
T 3gnn_A          198 EALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDNF----------TLDMMRDAVRVTEGRAVLEVSGGV-NFD  265 (298)
T ss_dssp             HHHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEESC----------CHHHHHHHHHHHTTSEEEEEESSC-STT
T ss_pred             HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCC-CHH
Confidence            4566777664 355555 467889999999999999999873          335566655556678999999998 667


Q ss_pred             HHHHHHHhCCCEEEEcHH
Q psy16780        133 DVFKALALGAKMVFVGRP  150 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~  150 (202)
                      .+.+....|+|.+.+|+.
T Consensus       266 ~i~~~a~tGVD~isvG~l  283 (298)
T 3gnn_A          266 TVRAIAETGVDRISIGAL  283 (298)
T ss_dssp             THHHHHHTTCSEEECGGG
T ss_pred             HHHHHHHcCCCEEEECCe
Confidence            888888899999999984

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=97.81  E-value=0.0001  Score=60.37  Aligned_cols=119  Identities=16%  Similarity=0.161  Sum_probs=78.2

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cCHH-HHHHHHHcCCcEEEeeccC-c------------------------CC-----
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LTAE-DAKIGVEMGASAIMVSNHG-G------------------------RQ-----   98 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~-~a~~l~~aG~d~I~v~~~g-g------------------------~~-----   98 (202)
                      +-...++++|+.++.|+-+=+- .+++ .++.+.++|+|+|+++.-. .                        |.     
T Consensus        44 ~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~  123 (231)
T 3ctl_A           44 LSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMK  123 (231)
T ss_dssp             BCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGT
T ss_pred             hcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHH
Confidence            3477999999988888776642 4443 4788899999999875321 1                        00     


Q ss_pred             -----C-----------CCc----cchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc-HHHHHH
Q psy16780         99 -----L-----------DYV----PASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG-RPALWG  154 (202)
Q Consensus        99 -----~-----------~~~----~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig-~~~l~~  154 (202)
                           .           .++    +...+-++++++..   +.+++|.++|||. .+.+.++..+|||.+.+| |+++.+
T Consensus       124 ~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~  202 (231)
T 3ctl_A          124 YYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNH  202 (231)
T ss_dssp             TTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGG
T ss_pred             HHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCC
Confidence                 0           011    22344455555443   2268999999997 577889999999999999 887632


Q ss_pred             hhhcChHHHHHHHHHHHHHHH
Q psy16780        155 LAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       155 ~~~~G~~~v~~~i~~l~~~L~  175 (202)
                         ..  ...+.++.+++.++
T Consensus       203 ---~d--~~~~~~~~l~~~~~  218 (231)
T 3ctl_A          203 ---AE--NIDEAWRIMTAQIL  218 (231)
T ss_dssp             ---CS--SHHHHHHHHHHHHH
T ss_pred             ---CC--cHHHHHHHHHHHHH
Confidence               12  03345556655444

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=97.81  E-value=0.00013  Score=61.61  Aligned_cols=88  Identities=20%  Similarity=0.152  Sum_probs=61.0

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEec-----c-CHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGI-----L-TAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~-~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      ++-+.+.+.|+++++.++ +..+|.+     + +.+.    ++.+.++|+|+|.-|.+-+    .+..+.+.+.-+++.+
T Consensus       132 g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~----~~gAT~edV~lM~~~v  206 (297)
T 4eiv_A          132 DGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLG----ATHATMFTVHLISIAL  206 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHH
Confidence            667777888999998884 6678976     2 3342    3557899999999876422    1223444333333332


Q ss_pred             ----------------------CCCcEEEEe-cCCCCHHHHHHHHH
Q psy16780        117 ----------------------GHKVDVYLD-GGVRYGTDVFKALA  139 (202)
Q Consensus       117 ----------------------~~~ipiia~-GGI~~~~D~~kal~  139 (202)
                                            +.++.|=++ |||||.+|+.+++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~  252 (297)
T 4eiv_A          207 REYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQ  252 (297)
T ss_dssp             HHHHCC------------------CCEEEEECTTCCHHHHHHHHHH
T ss_pred             HHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHH
Confidence                                  457999999 99999999999999

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=97.80  E-value=6.1e-05  Score=61.49  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+.++ .++..++|++.. +.|++++..+.+.|+|+|.+  +..     ... ..+.+..++..+ +++|+++.||| +.
T Consensus       109 ~~v~~-~~~~~g~~~i~G-~~t~~e~~~A~~~Gad~vk~--FPa-----~~~~G~~~lk~i~~~~-~~ipvvaiGGI-~~  177 (225)
T 1mxs_A          109 EDILE-AGVDSEIPLLPG-ISTPSEIMMGYALGYRRFKL--FPA-----EISGGVAAIKAFGGPF-GDIRFCPTGGV-NP  177 (225)
T ss_dssp             HHHHH-HHHHCSSCEECE-ECSHHHHHHHHTTTCCEEEE--TTH-----HHHTHHHHHHHHHTTT-TTCEEEEBSSC-CT
T ss_pred             HHHHH-HHHHhCCCEEEe-eCCHHHHHHHHHCCCCEEEE--ccC-----ccccCHHHHHHHHhhC-CCCeEEEECCC-CH
Confidence            33444 444578898875 88999999999999999998  321     011 245566665544 37999999999 56


Q ss_pred             HHHHHHHH-hCCCEEEEcHHHHH
Q psy16780        132 TDVFKALA-LGAKMVFVGRPALW  153 (202)
Q Consensus       132 ~D~~kal~-~GAd~V~ig~~~l~  153 (202)
                      +.+.+.++ .||++|. ||.+..
T Consensus       178 ~N~~~~l~~~Ga~~v~-gSai~~  199 (225)
T 1mxs_A          178 ANVRNYMALPNVMCVG-TTWMLD  199 (225)
T ss_dssp             TTHHHHHHSTTBCCEE-ECTTSC
T ss_pred             HHHHHHHhccCCEEEE-EchhcC
Confidence            78999999 6999999 887764

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=97.79  E-value=5.2e-05  Score=61.63  Aligned_cols=97  Identities=13%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.+.++.+.+.|++.+++.-....+.++...+...+..+++..+.+.+|..+||| +++++.++..+|||.+.+||++.
T Consensus       122 ~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~  200 (221)
T 3exr_A          122 WTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGIT  200 (221)
T ss_dssp             CCHHHHHHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHH
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHCCCCEEEECchhh
Confidence            35777888888999988874321111222222333445555544347899999999 55677788889999999999977


Q ss_pred             HHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        153 WGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       153 ~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      .+   ..+   .+.++.++++++.
T Consensus       201 ~a---~dp---~~a~~~~~~~~~~  218 (221)
T 3exr_A          201 EA---KNP---AGAARAFKDEIKR  218 (221)
T ss_dssp             TS---SSH---HHHHHHHHHHHHH
T ss_pred             CC---CCH---HHHHHHHHHHHHH
Confidence            42   222   2445566665553

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=97.76  E-value=0.00079  Score=54.94  Aligned_cols=114  Identities=11%  Similarity=0.125  Sum_probs=75.7

Q ss_pred             HHHHH---HHHHhcCCCEEEEec--cCHHHHHHHHHcC-CcEEEeec-cCcC-CCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         53 WSDVT---WLKTITKLPIVLKGI--LTAEDAKIGVEMG-ASAIMVSN-HGGR-QLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        53 ~~~i~---~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG-~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      .+.++   .+++. +..+.+-+.  ...+.++.+.+.| +|.|.+-+ +.|. +....+...+-++++++..+ +++|.+
T Consensus       101 ~~~i~~~~~i~~~-G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~-~~~I~V  178 (227)
T 1tqx_A          101 ERCIQLAKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQV  178 (227)
T ss_dssp             HHHHHHHHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEE
T ss_pred             HHHHHHHHHHHHc-CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-CCeEEE
Confidence            34677   77753 555555432  2346677788876 99996543 3222 12234556677788777654 799999


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      +|||. .+.+.++.++|||.+.+||+++.+   ..   ..+.++.+++.++
T Consensus       179 dGGI~-~~ti~~~~~aGAd~~V~GsaIf~~---~d---~~~~i~~l~~~~~  222 (227)
T 1tqx_A          179 DGGLN-IETTEISASHGANIIVAGTSIFNA---ED---PKYVIDTMRVSVQ  222 (227)
T ss_dssp             ESSCC-HHHHHHHHHHTCCEEEESHHHHTC---SS---HHHHHHHHHHHHH
T ss_pred             ECCCC-HHHHHHHHHcCCCEEEEeHHHhCC---CC---HHHHHHHHHHHHH
Confidence            99997 679999999999999999998741   12   3345556655443

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=97.75  E-value=4.6e-05  Score=64.42  Aligned_cols=87  Identities=24%  Similarity=0.236  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC---CCcEEEEecC
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG---HKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipiia~GG  127 (202)
                      .+.++..|+..+  .++.| .+.+.++++.+.++|+|+|.+++.          +.+.+.++++.++   .++|+.++||
T Consensus       180 ~~av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn~----------~~e~l~~av~~l~~~~~~v~ieASGG  248 (285)
T 1o4u_A          180 ERAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL----------SPEEVKDISRRIKDINPNVIVEVSGG  248 (285)
T ss_dssp             HHHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             HHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCceEEEECC
Confidence            346777777653  57777 677899999999999999999873          2334444444332   3799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      | +.+.+.+..+.|+|.+.+|+..
T Consensus       249 I-t~eni~~~a~tGVD~IsvGslt  271 (285)
T 1o4u_A          249 I-TEENVSLYDFETVDVISSSRLT  271 (285)
T ss_dssp             C-CTTTGGGGCCTTCCEEEEGGGT
T ss_pred             C-CHHHHHHHHHcCCCEEEEeHHH
Confidence            9 5688888888999999999854

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=97.75  E-value=0.00011  Score=60.42  Aligned_cols=73  Identities=21%  Similarity=0.248  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHcCC-----cEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVEMGA-----SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~aG~-----d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +++.++...++|.     ..|.+.. .|+     ....+.+.++++.. .++|++.-|||++++++.+++. |||.|.+|
T Consensus       147 ~~e~~~~~a~~g~~~l~~~~Vyl~~-~G~-----~~~~~~i~~i~~~~-~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG  218 (234)
T 2f6u_A          147 DKELAASYALVGEKLFNLPIIYIEY-SGT-----YGNPELVAEVKKVL-DKARLFYGGGIDSREKAREMLR-YADTIIVG  218 (234)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEEC-TTS-----CCCHHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred             CHHHHHHHHHhhhhhcCCCEEEEeC-CCC-----cchHHHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence            5677877777776     7777765 332     44667788887764 2699999999999999999988 99999999


Q ss_pred             HHHHHH
Q psy16780        149 RPALWG  154 (202)
Q Consensus       149 ~~~l~~  154 (202)
                      |++...
T Consensus       219 Sa~v~~  224 (234)
T 2f6u_A          219 NVIYEK  224 (234)
T ss_dssp             HHHHHH
T ss_pred             hHHHhC
Confidence            999863

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=97.73  E-value=0.00018  Score=58.34  Aligned_cols=89  Identities=22%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccC--cCC---CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHG--GRQ---LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL  138 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g--g~~---~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal  138 (202)
                      ++.+++ .+.+.+..+++.+.|.+.|-+.+..  ||.   ....+.......+..+.+..++||++-|||++++++..+.
T Consensus       111 Gl~~iv-~v~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~  189 (219)
T 2h6r_A          111 GLETIV-CTNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAAL  189 (219)
T ss_dssp             TCEEEE-EESSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHH
T ss_pred             CCeEEE-EeCCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHh
Confidence            665555 3344445677777888877665432  222   1111111233333333344479999999999999999999


Q ss_pred             HhCCCEEEEcHHHHH
Q psy16780        139 ALGAKMVFVGRPALW  153 (202)
Q Consensus       139 ~~GAd~V~ig~~~l~  153 (202)
                      ..|||+|.+|++++.
T Consensus       190 ~~gaDgvlVGsAi~~  204 (219)
T 2h6r_A          190 DLGAEGVLLASGVVK  204 (219)
T ss_dssp             TTTCCCEEESHHHHT
T ss_pred             hCCCCEEEEcHHHhC
Confidence            999999999999986

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=97.70  E-value=0.00025  Score=61.69  Aligned_cols=94  Identities=26%  Similarity=0.260  Sum_probs=71.1

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      +++...+.++++++..+.|+.+-... +.+.++.+.++|+|.|++....|.    .....+.+.++++.+  ++||++ |
T Consensus        79 s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~----~~~~~~~i~~i~~~~--~~~Viv-g  151 (361)
T 3khj_A           79 DMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-G  151 (361)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCS----BHHHHHHHHHHHHHC--CCEEEE-E
T ss_pred             CHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCC----cHHHHHHHHHHHHhc--CCcEEE-c
Confidence            45555678888888778898887653 478899999999999998543221    011234567777766  789987 6


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEc
Q psy16780        127 GVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig  148 (202)
                      ++.+.+++.++..+|||+|.+|
T Consensus       152 ~v~t~e~A~~l~~aGaD~I~VG  173 (361)
T 3khj_A          152 NVVTEEATKELIENGADGIKVG  173 (361)
T ss_dssp             EECSHHHHHHHHHTTCSEEEEC
T ss_pred             cCCCHHHHHHHHHcCcCEEEEe
Confidence            7899999999999999999985

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=97.67  E-value=0.00035  Score=56.11  Aligned_cols=111  Identities=11%  Similarity=0.084  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccC---cCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         54 SDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHG---GRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~g---g~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      ..++.+++ .+.++.+++.  .+...++.+.+.|.+.+++.-..   ....++   ..+.+..+++..+.++||++.|||
T Consensus        97 ~~~~~~~~-~g~~~~~~ll~~~t~~~~~~l~~~~~~~~vl~~a~~~~~~G~~g---~~~~i~~lr~~~~~~~~i~v~GGI  172 (216)
T 1q6o_A           97 GALDVAKE-FNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAW---GEADITAIKRLSDMGFKVTVTGGL  172 (216)
T ss_dssp             HHHHHHHH-TTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCC---CHHHHHHHHHHHHTTCEEEEESSC
T ss_pred             HHHHHHHH-cCCCceeeeeeCCChhhHHHHHhcCcHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhcCCCCcEEEECCc
Confidence            34555554 4677665543  23556677777788777662210   001111   244455555555447899999999


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      + ++.+.+++.+|||.+.+||+++.+   ..+   .+.++.+++.++
T Consensus       173 ~-~~~~~~~~~aGad~ivvG~~I~~a---~dp---~~~~~~~~~~i~  212 (216)
T 1q6o_A          173 A-LEDLPLFKGIPIHVFIAGRSIRDA---ASP---VEAARQFKRSIA  212 (216)
T ss_dssp             C-GGGGGGGTTSCCSEEEESHHHHTS---SCH---HHHHHHHHHHHH
T ss_pred             C-hhhHHHHHHcCCCEEEEeehhcCC---CCH---HHHHHHHHHHHH
Confidence            8 778888999999999999998742   222   344455555544

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=97.66  E-value=0.00051  Score=62.82  Aligned_cols=80  Identities=15%  Similarity=0.045  Sum_probs=59.0

Q ss_pred             cCHHHHHHHHHcC---CcEEEeeccCcCCC--CC--ccchHHHHHHHHHHh----CCCcEEEEecCCCCHHHHHHHHH--
Q psy16780         73 LTAEDAKIGVEMG---ASAIMVSNHGGRQL--DY--VPASIEALPEIAKAV----GHKVDVYLDGGVRYGTDVFKALA--  139 (202)
Q Consensus        73 ~~~~~a~~l~~aG---~d~I~v~~~gg~~~--~~--~~~~~~~l~~i~~~~----~~~ipiia~GGI~~~~D~~kal~--  139 (202)
                      .++++++.+.+.|   +|+|-++.-..+.-  +.  .+..++.++++++.+    ..++|+++-||| +.+++.+.+.  
T Consensus       116 ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~  194 (540)
T 3nl6_A          116 GFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQC  194 (540)
T ss_dssp             CSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhh
Confidence            6789999999999   99999854221211  11  122456666666553    137999999999 7899999997  


Q ss_pred             ------hCCCEEEEcHHHHH
Q psy16780        140 ------LGAKMVFVGRPALW  153 (202)
Q Consensus       140 ------~GAd~V~ig~~~l~  153 (202)
                            .||++|.++|+++.
T Consensus       195 ~~~g~~~GadgvAVvsaI~~  214 (540)
T 3nl6_A          195 VSSNGKRSLDGICVVSDIIA  214 (540)
T ss_dssp             BCTTSSCBCSCEEESHHHHT
T ss_pred             cccccccCceEEEEeHHHhc
Confidence                  79999999999874

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=97.66  E-value=0.00015  Score=59.74  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             HHHHHHHHHcCC----cEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         75 AEDAKIGVEMGA----SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        75 ~~~a~~l~~aG~----d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      ++.++...++|.    ..|.+.+ .|+     ....+.+.++++.. .++|++.-|||++++++.+++. |||.|.+||+
T Consensus       141 ~~~~~~~a~~g~~~~~~~VYl~s-~G~-----~~~~~~i~~i~~~~-~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa  212 (240)
T 1viz_A          141 MDDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVL-ETSTLFYGGGIKDAETAKQYAE-HADVIVVGNA  212 (240)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTC-SSSEEEEESSCCSHHHHHHHHT-TCSEEEECTH
T ss_pred             HHHHHHHHHhCcccCCCEEEEeC-CCc-----cChHHHHHHHHHhc-CCCCEEEEeccCCHHHHHHHHh-CCCEEEEChH
Confidence            567777776664    6676655 333     34667788887653 2689999999999999999888 9999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +..
T Consensus       213 ~v~  215 (240)
T 1viz_A          213 VYE  215 (240)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            986

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=97.58  E-value=0.00054  Score=55.92  Aligned_cols=101  Identities=23%  Similarity=0.285  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHH---------HHHHHHcCCcEEEeeccCcCC----------------C-------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAED---------AKIGVEMGASAIMVSNHGGRQ----------------L-------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~---------a~~l~~aG~d~I~v~~~gg~~----------------~-------   99 (202)
                      ....+..+++.+++||..|.+ ++.+         +..+.+.|+|+|.+.-.-.|.                +       
T Consensus        47 ~~~~L~~v~~~~~i~v~aQdv-~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg  125 (225)
T 1hg3_A           47 QLVDLRMIAESVEIPVFAQHI-DPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSN  125 (225)
T ss_dssp             CHHHHHHHHHSCSSCBEESCC-CSCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CHHHHHHHHHhcCCceeeeeC-CcccCCCccCcccHHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence            577889999888999999874 3444         788889999999885322111                0       


Q ss_pred             -----------------------C-Cc----cchHHHHHHH---HHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        100 -----------------------D-YV----PASIEALPEI---AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       100 -----------------------~-~~----~~~~~~l~~i---~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                                             . .+    ..+.+.+.+.   .+.+..+++++.-|||.+..|+..+...|+|++.+|
T Consensus       126 e~~e~~~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG  205 (225)
T 1hg3_A          126 NPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLA  205 (225)
T ss_dssp             SHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             CHHHHHHHhcCCCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeC
Confidence                                   0 12    2233323332   233445799999999999999999999999999999


Q ss_pred             HHHHH
Q psy16780        149 RPALW  153 (202)
Q Consensus       149 ~~~l~  153 (202)
                      ++++.
T Consensus       206 ~a~l~  210 (225)
T 1hg3_A          206 SGVTK  210 (225)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99986

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=97.58  E-value=4.7e-05  Score=60.76  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        107 EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       107 ~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ..+.++++.+  ++|||+.|+|++.+|+.+++.+||++|..++..+|
T Consensus       140 ~iI~~i~~~~--~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW  184 (192)
T 3kts_A          140 EQVQKMTQKL--HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW  184 (192)
T ss_dssp             HHHHHHHHHH--CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGG
T ss_pred             HHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHh
Confidence            5778888877  89999999999999999999999999999998887

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=97.55  E-value=0.00028  Score=59.51  Aligned_cols=86  Identities=13%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             HHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC---CCcEEEEecCCC
Q psy16780         54 SDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG---HKVDVYLDGGVR  129 (202)
Q Consensus        54 ~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipiia~GGI~  129 (202)
                      +.+++.|+..+ .|+.| .+.+.++++.+.++|+|.|.+++.          +.+.+.++.+.++   .++++.+|||| 
T Consensus       183 ~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn~----------~~~~~~~~v~~l~~~~~~v~ieaSGGI-  250 (284)
T 1qpo_A          183 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF----------AVWQTQTAVQRRDSRAPTVMLESSGGL-  250 (284)
T ss_dssp             HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESSC-
T ss_pred             HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-
Confidence            46777777652 36766 677899999999999999999773          2233333333322   37999999998 


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      +.+.+.+....|+|.+.+|+..
T Consensus       251 t~~~i~~~a~tGVD~isvG~l~  272 (284)
T 1qpo_A          251 SLQTAATYAETGVDYLAVGALT  272 (284)
T ss_dssp             CTTTHHHHHHTTCSEEECGGGT
T ss_pred             CHHHHHHHHhcCCCEEEECHHH
Confidence            6788999999999999999843

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=97.55  E-value=3.7e-05  Score=81.99  Aligned_cols=89  Identities=15%  Similarity=0.175  Sum_probs=61.5

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCc------EEEeecc--CcCCCCCccchHHHHHHHHHHhC--CCcEEEEecCCCCHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGAS------AIMVSNH--GGRQLDYVPASIEALPEIAKAVG--HKVDVYLDGGVRYGTD  133 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d------~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~--~~ipiia~GGI~~~~D  133 (202)
                      +++++.=.+.+.+.++++.+.|+|      +|++.|.  ||...  .......+......++  .++|||+.|||.++++
T Consensus       543 Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g--~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~  620 (3089)
T 3zen_D          543 GISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHS--WEDLDDLLLATYSELRSRSNITICVGGGIGTPER  620 (3089)
T ss_dssp             HHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSEECC--SCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTT
T ss_pred             CCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCC--cccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHH
Confidence            444443124677888889999998      7877663  33221  1122334423323221  2799999999999999


Q ss_pred             HHHHH-----------HhCCCEEEEcHHHHHH
Q psy16780        134 VFKAL-----------ALGAKMVFVGRPALWG  154 (202)
Q Consensus       134 ~~kal-----------~~GAd~V~ig~~~l~~  154 (202)
                      +..++           ++|||+|+|||.|+..
T Consensus       621 vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t  652 (3089)
T 3zen_D          621 SAEYLSGRWAEVHGYPLMPIDGILVGTAAMAT  652 (3089)
T ss_dssp             THHHHHTGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred             HHHHhccccccccCccCCCCCEEEecHHHHhC
Confidence            99999           9999999999999864

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=97.54  E-value=0.00071  Score=55.26  Aligned_cols=101  Identities=23%  Similarity=0.262  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHH---------HHHHHHcCCcEEEeeccCcCC----------------C-------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAED---------AKIGVEMGASAIMVSNHGGRQ----------------L-------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~---------a~~l~~aG~d~I~v~~~gg~~----------------~-------   99 (202)
                      ....+..+++.+++||..|.+ ++.+         +..+.+.|+|+|.+.-.-.|.                +       
T Consensus        44 ~~~~L~~v~~~~~i~v~aQdv-~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg  122 (226)
T 1w0m_A           44 NHLELGLVSQSVDIPVYAQGA-DVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAP  122 (226)
T ss_dssp             CGGGHHHHHTTCSSCBEESCC-SBSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CHHHHHHHHHhcCCceEeeEC-ChhhCCCccCCCCHHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence            355788888888999999874 3444         778888999999885432111                0       


Q ss_pred             -----------------------C-Cc----cchHHHHHHH---HHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        100 -----------------------D-YV----PASIEALPEI---AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       100 -----------------------~-~~----~~~~~~l~~i---~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                                             . .+    ..+.+.+.+.   .+.+..+++++.-|||.+..|+..+...|+|++.+|
T Consensus       123 e~~e~~~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG  202 (226)
T 1w0m_A          123 DPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLA  202 (226)
T ss_dssp             SHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CHHHHHHHhcCCCCEEEEcChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEEC
Confidence                                   0 11    2223323332   223445799999999999999999999999999999


Q ss_pred             HHHHH
Q psy16780        149 RPALW  153 (202)
Q Consensus       149 ~~~l~  153 (202)
                      ++++.
T Consensus       203 ~a~l~  207 (226)
T 1w0m_A          203 SAAVK  207 (226)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99996

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=97.53  E-value=0.00014  Score=64.00  Aligned_cols=102  Identities=11%  Similarity=-0.103  Sum_probs=61.6

Q ss_pred             cccHHHHHHHHHhc-CCCEEEEeccC--------------H----HHHHHHHHcC-----CcEEEeeccCcCC--CCCcc
Q psy16780         50 TINWSDVTWLKTIT-KLPIVLKGILT--------------A----EDAKIGVEMG-----ASAIMVSNHGGRQ--LDYVP  103 (202)
Q Consensus        50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~--------------~----~~a~~l~~aG-----~d~I~v~~~gg~~--~~~~~  103 (202)
                      .|..|+|++||+.+ +-||.+|++..              .    +.+..+...+     .+.+.+.......  .....
T Consensus       223 Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (400)
T 4gbu_A          223 RFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGE  302 (400)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTT
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEeccccccCCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCccccccc
Confidence            35788999999987 35999998610              1    1223333322     2334433211100  00000


Q ss_pred             --chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780        104 --ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus       104 --~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~  153 (202)
                        ........+++.+  ++|||++||+.+..++.+.+.. +||+|.+||+|+.
T Consensus       303 ~~~~~~~~~~ir~~~--~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~ia  353 (400)
T 4gbu_A          303 GEYEGGSNDFVYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS  353 (400)
T ss_dssp             TCCCSCCSTHHHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred             chhhhHHHHHHHHHh--CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence              0001112345555  7999999999998888888876 5999999999996

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=97.53  E-value=0.00029  Score=57.93  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=59.5

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...+.|+|.+++-.-.+. .++.....+.+.++++..  .+|+...||||+.+|+.+.+.+||+-|.++|..+
T Consensus        34 ~~~a~~~~~~gad~lhvvDld~a-~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~  108 (243)
T 4gj1_A           34 LKKFKEYEKAGAKELHLVDLTGA-KDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI  108 (243)
T ss_dssp             HHHHHHHHHHTCCEEEEEEHHHH-HCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred             HHHHHHHHHCCCCEEEEEecCcc-cccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence            47789999999999887531110 112345677888888776  7999999999999999999999999999999654

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=97.50  E-value=0.00052  Score=54.78  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      ++.+.+.|++++.++.+          ..+.+.++++..+. -+++.+|||+. +.++.+++++|||.+.+||+++.+  
T Consensus       125 ~~~a~~~G~~G~~~~~~----------~~~~i~~lr~~~~~-~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a--  191 (208)
T 2czd_A          125 IEVANEIEPFGVIAPGT----------RPERIGYIRDRLKE-GIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA--  191 (208)
T ss_dssp             HHHHHHHCCSEEECCCS----------STHHHHHHHHHSCT-TCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS--
T ss_pred             HHHHHHhCCcEEEECCC----------ChHHHHHHHHhCCC-CeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC--
Confidence            55677889888877542          23445566665533 34679999986 558999999999999999998852  


Q ss_pred             hcChHHHHHHHHHHHHHH
Q psy16780        157 HSGKSGVRKVLDILINEF  174 (202)
Q Consensus       157 ~~G~~~v~~~i~~l~~~L  174 (202)
                       .+   ..+.++.+++++
T Consensus       192 -~d---p~~~~~~l~~~i  205 (208)
T 2czd_A          192 -PN---PREAAKAIYDEI  205 (208)
T ss_dssp             -SS---HHHHHHHHHHHH
T ss_pred             -CC---HHHHHHHHHHHH
Confidence             22   334555555544

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.45  E-value=0.00061  Score=55.86  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=61.2

Q ss_pred             cHHHHHHHHHhcCCC-EEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITKLP-IVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~P-v~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.|+++++.++-. +....+.+.++++.+.++|+|+|+.-+          .+.+.+..+++ .  .+|++.  |+.|
T Consensus        72 a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~----------~~~~vi~~~~~-~--gi~~ip--Gv~T  136 (232)
T 4e38_A           72 AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG----------FNPNTVRACQE-I--GIDIVP--GVNN  136 (232)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH-H--TCEEEC--EECS
T ss_pred             HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHH-c--CCCEEc--CCCC
Confidence            467899999987443 334446899999999999999996421          13344444433 3  688887  6899


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      +.++.+|+++|||.|.+
T Consensus       137 ptEi~~A~~~Gad~vK~  153 (232)
T 4e38_A          137 PSTVEAALEMGLTTLKF  153 (232)
T ss_dssp             HHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHcCCCEEEE
Confidence            99999999999999987

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=97.43  E-value=0.00087  Score=58.47  Aligned_cols=95  Identities=18%  Similarity=0.170  Sum_probs=68.1

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEec---cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~---~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      +++...+.++++|+.-++++.+-..   ...+.++.+.++|+|.|++....|..    ....+.+.++++.+ +++||++
T Consensus        80 s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~----~~~~~~I~~ik~~~-p~v~Vi~  154 (366)
T 4fo4_A           80 SIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHS----EGVLQRIRETRAAY-PHLEIIG  154 (366)
T ss_dssp             CHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTS----HHHHHHHHHHHHHC-TTCEEEE
T ss_pred             CHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCC----HHHHHHHHHHHHhc-CCCceEe
Confidence            4555566788888754555555432   34788999999999999986543321    12334567777665 3688877


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                       |.+.+.+++.++..+|||+|.+|
T Consensus       155 -G~v~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          155 -GNVATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             -EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             -eeeCCHHHHHHHHHcCCCEEEEe
Confidence             66899999999999999999994

>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*

Probab=97.39  E-value=0.0043  Score=50.45  Aligned_cols=116  Identities=17%  Similarity=0.197  Sum_probs=74.9

Q ss_pred             cHHHHHHHHHh--cCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHH---HHhCCCcEEEEec
Q psy16780         52 NWSDVTWLKTI--TKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA---KAVGHKVDVYLDG  126 (202)
Q Consensus        52 ~~~~i~~i~~~--~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~---~~~~~~ipiia~G  126 (202)
                      +++=++.++..  -++++-+=.+++..++..+.++|+++|..  .-||-.+.+.+....+.++.   +..+.+..|++. 
T Consensus        90 T~eGl~A~~~L~~~GI~vn~TlifS~~QA~~Aa~AGa~yISP--fvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~IlaA-  166 (223)
T 3s1x_A           90 TEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSP--FVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVA-  166 (223)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEE--BSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEB-
T ss_pred             CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCeEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEE-
Confidence            35544444432  27777777778899999999999998865  33443333333444444443   333335666664 


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcC--hHHHHHHHHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALWGLAHSG--KSGVRKVLDIL  170 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G--~~~v~~~i~~l  170 (202)
                      .+|+..++.++..+|||.+-+.-.++..+....  ..++++|.+.|
T Consensus       167 S~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw  212 (223)
T 3s1x_A          167 SIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDW  212 (223)
T ss_dssp             SCCSHHHHHHHHHHTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHcCCCEEEeCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            599999999999999999999988887643221  14444444444

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=97.37  E-value=0.0005  Score=55.68  Aligned_cols=86  Identities=14%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++.+.++|+|+++++.+          ....+..+++.++ + .++.++||+. +.+..+++..|||.+.+||+++.
T Consensus       118 ~~~a~~a~~~G~~GvV~sat----------~~~e~~~ir~~~~-~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~  185 (215)
T 3ve9_A          118 PYLREVARRVNPKGFVAPAT----------RPSMISRVKGDFP-D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQ  185 (215)
T ss_dssp             HHHHHHHHHHCCSEEECCTT----------SHHHHHHHHHHCT-T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHT
T ss_pred             HHHHHHHHHcCCCceeeCCC----------CHHHHHHHHHhCC-C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcC
Confidence            35577788999999988542          2344566666664 4 6888999984 33677888999999999999985


Q ss_pred             HhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780        154 GLAHSGKSGVRKVLDILINEFDQAL  178 (202)
Q Consensus       154 ~~~~~G~~~v~~~i~~l~~~L~~~m  178 (202)
                      +   ..+   .+.++.++++++...
T Consensus       186 a---~dp---~~a~~~i~~~i~~~~  204 (215)
T 3ve9_A          186 S---ADP---VRKLEEIVRSQEEVL  204 (215)
T ss_dssp             S---SSH---HHHHHHHHHHHHHHC
T ss_pred             C---CCH---HHHHHHHHHHHHHHH
Confidence            3   222   344566666666544

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=97.34  E-value=0.0018  Score=52.80  Aligned_cols=87  Identities=14%  Similarity=0.150  Sum_probs=62.1

Q ss_pred             cHHHHHHHHHhcCCCEE--EEe------c---cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCC
Q psy16780         52 NWSDVTWLKTITKLPIV--LKG------I---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHK  119 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~--vK~------~---~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~  119 (202)
                      ..+.|+++|+.+++||+  .|.      .   .+.++++.+.++|+|.|.+.......    +... +.+..+++ .  .
T Consensus        57 ~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~----p~~l~~~i~~~~~-~--g  129 (229)
T 3q58_A           57 GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSR----PVDIDSLLTRIRL-H--G  129 (229)
T ss_dssp             SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCC----SSCHHHHHHHHHH-T--T
T ss_pred             CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCC----hHHHHHHHHHHHH-C--C
Confidence            57899999999999987  231      1   34678999999999999886542211    1222 23444433 2  5


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +++++  .+++.+++.++..+|||.|.+
T Consensus       130 ~~v~~--~v~t~eea~~a~~~Gad~Ig~  155 (229)
T 3q58_A          130 LLAMA--DCSTVNEGISCHQKGIEFIGT  155 (229)
T ss_dssp             CEEEE--ECSSHHHHHHHHHTTCSEEEC
T ss_pred             CEEEE--ecCCHHHHHHHHhCCCCEEEe
Confidence            66665  589999999999999999975

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=97.33  E-value=0.0018  Score=52.81  Aligned_cols=87  Identities=18%  Similarity=0.270  Sum_probs=61.8

Q ss_pred             cHHHHHHHHHhcCCCEEE--Ee------c---cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCC
Q psy16780         52 NWSDVTWLKTITKLPIVL--KG------I---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHK  119 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~v--K~------~---~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~  119 (202)
                      ..+.|+++|+.+++||+-  |-      .   .+.++++.+.++|+|.|.+.......    +.... .+..+++ .  .
T Consensus        57 ~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~----p~~l~~~i~~~~~-~--g  129 (232)
T 3igs_A           57 GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQR----PVAVEALLARIHH-H--H  129 (232)
T ss_dssp             SHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCC----SSCHHHHHHHHHH-T--T
T ss_pred             CHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCC----HHHHHHHHHHHHH-C--C
Confidence            578999999999999962  31      1   35678999999999999886542211    22222 3344432 2  5


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +++++  .+++.+++.++..+|||.+.+
T Consensus       130 ~~v~~--~v~t~eea~~a~~~Gad~Ig~  155 (232)
T 3igs_A          130 LLTMA--DCSSVDDGLACQRLGADIIGT  155 (232)
T ss_dssp             CEEEE--ECCSHHHHHHHHHTTCSEEEC
T ss_pred             CEEEE--eCCCHHHHHHHHhCCCCEEEE
Confidence            66665  589999999999999999975

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=97.30  E-value=0.0017  Score=55.11  Aligned_cols=96  Identities=20%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             cHHHHHHHHHh---cCCCEEEEec-----c----CH-----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         52 NWSDVTWLKTI---TKLPIVLKGI-----L----TA-----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        52 ~~~~i~~i~~~---~~~Pv~vK~~-----~----~~-----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      ..+.++++.+.   +++|+++=..     .    ++     +.++.+.+.|+|.+.+.-..    + +..+++.+.++.+
T Consensus       140 ~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~----~-~~g~~~~~~~vv~  214 (304)
T 1to3_A          140 RLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPL----Y-GKGARSDLLTASQ  214 (304)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGG----G-GCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCc----C-CCCCHHHHHHHHH
Confidence            34455555554   5899887543     1    12     23677888999999884310    0 0114455555554


Q ss_pred             Hh-C-CCcE-EEEecCCCCHH----HHHHHHHhCCCEEEEcHHHHH
Q psy16780        115 AV-G-HKVD-VYLDGGVRYGT----DVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       115 ~~-~-~~ip-iia~GGI~~~~----D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .. . ..+| |+++||+ +.+    .+..++..||++|.+||.+..
T Consensus       215 ~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q  259 (304)
T 1to3_A          215 RLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWS  259 (304)
T ss_dssp             HHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred             hccccCCCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhC
Confidence            41 1 2789 9999999 553    477778899999999999875

>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}

Probab=97.29  E-value=0.0043  Score=50.08  Aligned_cols=102  Identities=16%  Similarity=0.180  Sum_probs=69.9

Q ss_pred             cHHHHHHHHHh--cCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH---HhCCCcEEEEec
Q psy16780         52 NWSDVTWLKTI--TKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK---AVGHKVDVYLDG  126 (202)
Q Consensus        52 ~~~~i~~i~~~--~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~---~~~~~ipiia~G  126 (202)
                      +++=++.++..  -++++-+=.+++..++..+.++|+++|...  -||-.+.+.+....+.++.+   ..+.+..|++. 
T Consensus        88 T~eGl~A~~~L~~~GI~vn~TlifS~~Qa~~Aa~AGa~yISPf--vgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ilaA-  164 (212)
T 3r8r_A           88 TSDGLKAVRALTDLGIKTNVTLIFNANQALLAARAGATYVSPF--LGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAA-  164 (212)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEEB-
T ss_pred             CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCeEEEec--cchhhhcCCChHHHHHHHHHHHHHcCCCCEEEEe-
Confidence            35544444432  377887777789999999999999988652  23433333344445554443   33335666664 


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      .+|+..++.++..+|||.+-+.-.++..+.
T Consensus       165 S~R~~~~v~~~a~~G~d~~Tip~~vl~~l~  194 (212)
T 3r8r_A          165 SIRHPQHVTEAALRGAHIGTMPLKVIHALT  194 (212)
T ss_dssp             SCCSHHHHHHHHHTTCSEEEECHHHHHHHT
T ss_pred             cCCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence            599999999999999999999988887643

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=97.22  E-value=0.0004  Score=57.03  Aligned_cols=47  Identities=13%  Similarity=0.277  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +.+.+.++++.. .++|++.-|||++++++.++.. |||+|.+|+++..
T Consensus       173 ~~~~v~~ir~~~-~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~  219 (235)
T 3w01_A          173 DVSKVQAVSEHL-TETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK  219 (235)
T ss_dssp             CHHHHHHHHTTC-SSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred             CHHHHHHHHHhc-CCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence            466677776543 3699999999999999998777 9999999999986

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=97.22  E-value=0.0015  Score=53.12  Aligned_cols=87  Identities=13%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ...++.+.++|+|+++++.+          ..+.+..+++.++ + .++.++||+-. .+..+++..|||.+.+|||++.
T Consensus       125 ~~~a~~a~~~g~~GvV~sat----------~p~e~~~ir~~~~-~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~  192 (222)
T 4dbe_A          125 DYIKNVIREISPKGIVVGGT----------KLDHITQYRRDFE-K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYN  192 (222)
T ss_dssp             HHHHHHHHHHCCSEEEECTT----------CHHHHHHHHHHCT-T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHT
T ss_pred             HHHHHHHHHhCCCEEEECCC----------CHHHHHHHHHhCC-C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcC
Confidence            45678888999999988542          2244566666664 4 57888999853 3577788899999999999986


Q ss_pred             HhhhcChHHHHHHHHHHHHHHHHHHH
Q psy16780        154 GLAHSGKSGVRKVLDILINEFDQALA  179 (202)
Q Consensus       154 ~~~~~G~~~v~~~i~~l~~~L~~~m~  179 (202)
                      +   ..+   .+..+.++++++....
T Consensus       193 A---~dP---~~aa~~i~~~i~~~~~  212 (222)
T 4dbe_A          193 A---GNP---LTALRTINKIIEDKVM  212 (222)
T ss_dssp             S---SSH---HHHHHHHHHHHHHHHH
T ss_pred             C---CCH---HHHHHHHHHHHHHHHH
Confidence            3   222   2444566666665443

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=97.21  E-value=0.0011  Score=55.67  Aligned_cols=84  Identities=17%  Similarity=0.097  Sum_probs=62.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH-HhCCCcEEEEecCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK-AVGHKVDVYLDGGVR  129 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~-~~~~~ipiia~GGI~  129 (202)
                      ..+.|++|++.+++||+-|.. .....++.+..+|+|+|+-+.  +..      ..+....+.+ .+  ++|+++  |++
T Consensus        56 dp~~I~~I~~aVsIPVm~k~righ~~EAqilea~GaD~IDese--vlt------pad~~~~I~k~~f--~vpfv~--~~~  123 (291)
T 3o07_A           56 DPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESE--VLT------PADWTHHIEKDKF--KVPFVC--GAK  123 (291)
T ss_dssp             CHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEEEEET--TSC------CSCSSCCCCGGGC--SSCEEE--EES
T ss_pred             CHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHcCCCEEeccc--CCC------HHHHHHHhhhhcC--CCcEEe--eCC
Confidence            456999999999999999986 458899999999999996542  111      1111112212 22  678887  689


Q ss_pred             CHHHHHHHHHhCCCEEEE
Q psy16780        130 YGTDVFKALALGAKMVFV  147 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~i  147 (202)
                      |.+++..++..||+.|..
T Consensus       124 ~l~EAlrri~eGA~mIrT  141 (291)
T 3o07_A          124 DLGEALRRINEGAAMIRT  141 (291)
T ss_dssp             SHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHHHHCCCCEEEe
Confidence            999999999999999875

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.18  E-value=0.0005  Score=63.02  Aligned_cols=76  Identities=22%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             HHHHHHHHcCCcEEEeeccCcC-CCC-CccchHHHHHHHHHHhCCCcEEEEecCCCCH-----------HHHHHHHHhCC
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGR-QLD-YVPASIEALPEIAKAVGHKVDVYLDGGVRYG-----------TDVFKALALGA  142 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~-~~~-~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~-----------~D~~kal~~GA  142 (202)
                      +.|+.+.+.|+|.+++.+-.+. ... ....+.+.+.++++.+  .+||+..|||++.           +++.+++.+||
T Consensus       284 ~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~--~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGa  361 (555)
T 1jvn_A          284 QLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGA  361 (555)
T ss_dssp             HHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC--CCcEEEeCccccchhcccccchHHHHHHHHHHcCC
Confidence            5688889999999988663321 100 1123456667766555  7999999999998           45999999999


Q ss_pred             CEEEEcHHHHH
Q psy16780        143 KMVFVGRPALW  153 (202)
Q Consensus       143 d~V~ig~~~l~  153 (202)
                      |.|.+|+..+.
T Consensus       362 d~V~igt~~~~  372 (555)
T 1jvn_A          362 DKVSIGTDAVY  372 (555)
T ss_dssp             SEEEECHHHHH
T ss_pred             CEEEECCHHhh
Confidence            99999998764

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.10  E-value=0.0026  Score=51.71  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.++++++.++ +-+....+++.+.++.+.++|+|+|+..+          .+.+.+...++ +  .+|++.  |+.|
T Consensus        55 ~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~----------~d~~v~~~ar~-~--g~~~i~--Gv~t  119 (224)
T 1vhc_A           55 AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG----------LNPKIVKLCQD-L--NFPITP--GVNN  119 (224)
T ss_dssp             HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH-T--TCCEEC--EECS
T ss_pred             HHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECC----------CCHHHHHHHHH-h--CCCEEe--ccCC
Confidence            3568888888873 33444445788999999999999996421          12333444443 4  456555  4999


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      +.++.+++.+|||.|.+
T Consensus       120 ~~e~~~A~~~Gad~vk~  136 (224)
T 1vhc_A          120 PMAIEIALEMGISAVKF  136 (224)
T ss_dssp             HHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHCCCCEEEE
Confidence            99999999999999988

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=97.09  E-value=0.0058  Score=48.69  Aligned_cols=94  Identities=15%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             cHHHHHHHHHhcCCCEEE--E-e--------ccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         52 NWSDVTWLKTITKLPIVL--K-G--------ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~v--K-~--------~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ..+.++++++.+++|++-  | .        ..+.+.++.+.++|+|.|.++.......+  ....+.+..+++.+ +..
T Consensus        44 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~--~~~~~~i~~~~~~~-~~~  120 (223)
T 1y0e_A           44 TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK--ETLDELVSYIRTHA-PNV  120 (223)
T ss_dssp             SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSS--SCHHHHHHHHHHHC-TTS
T ss_pred             CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCcc--cCHHHHHHHHHHhC-CCc
Confidence            457899999999999952  1 1        03467889999999999998653211000  12235567777665 356


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      +++.  ++.+.+++.++...|+|.++++.+
T Consensus       121 ~v~~--~~~t~~e~~~~~~~G~d~i~~~~~  148 (223)
T 1y0e_A          121 EIMA--DIATVEEAKNAARLGFDYIGTTLH  148 (223)
T ss_dssp             EEEE--ECSSHHHHHHHHHTTCSEEECTTT
T ss_pred             eEEe--cCCCHHHHHHHHHcCCCEEEeCCC
Confidence            6665  578999999999999999987654

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=97.09  E-value=0.0026  Score=51.25  Aligned_cols=81  Identities=10%  Similarity=0.058  Sum_probs=58.7

Q ss_pred             cHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.++++++.++ +-+....+.+.+.++.+.++|+|+++..+          .+.+. .+.++..  .+|++.  |+.|
T Consensus        54 ~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~----------~d~~v-~~~~~~~--g~~~i~--G~~t  118 (214)
T 1wbh_A           54 AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPL-LKAATEG--TIPLIP--GIST  118 (214)
T ss_dssp             HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHH-HHHHHHS--SSCEEE--EESS
T ss_pred             HHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC----------CCHHH-HHHHHHh--CCCEEE--ecCC
Confidence            3568888888874 33444445788999999999999997532          12222 2333444  567765  4999


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      +.++.+++.+|||.|.+
T Consensus       119 ~~e~~~A~~~Gad~v~~  135 (214)
T 1wbh_A          119 VSELMLGMDYGLKEFKF  135 (214)
T ss_dssp             HHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHCCCCEEEE
Confidence            99999999999999988

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=97.00  E-value=0.0056  Score=52.65  Aligned_cols=105  Identities=18%  Similarity=0.156  Sum_probs=62.1

Q ss_pred             HHHH--HHcCCcEEEeeccCcCC----CCCc------cchHHHHHHHHHHhCCCcEEE-EecCCCCHHHHHHH----HHh
Q psy16780         78 AKIG--VEMGASAIMVSNHGGRQ----LDYV------PASIEALPEIAKAVGHKVDVY-LDGGVRYGTDVFKA----LAL  140 (202)
Q Consensus        78 a~~l--~~aG~d~I~v~~~gg~~----~~~~------~~~~~~l~~i~~~~~~~ipii-a~GGI~~~~D~~ka----l~~  140 (202)
                      ++.+  .+.|+|.+.+--.+...    +..+      ....+.+.++.+..  .+|+| .+||+ +.++..+.    +.+
T Consensus       194 ~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~--~~P~v~lsgG~-~~~~fl~~v~~A~~a  270 (332)
T 3iv3_A          194 MKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST--DLPYIYLSAGV-SAELFQETLVFAHKA  270 (332)
T ss_dssp             HHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC--SSCEEEECTTC-CHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence            4556  56799999985332110    1001      11122345544443  79965 69998 55565544    457


Q ss_pred             CC--CEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        141 GA--KMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       141 GA--d~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      ||  ++|.+||....       .++.-+.+.=.+..+.+|...|..+|++|+..
T Consensus       271 Ga~f~Gv~~GRnvwq-------~~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~v  317 (332)
T 3iv3_A          271 GAKFNGVLCGRATWA-------GSVQVYMEEGKEAARQWLRTSGLQNINELNKV  317 (332)
T ss_dssp             TCCCCEEEECHHHHT-------THHHHHHHHCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCCcceEEeeHHHHH-------hhhhhhccccHHHHHHHHHHHhHHHHHHHHHH
Confidence            99  99999998764       23333333334456677777777777777654

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=96.99  E-value=0.0023  Score=52.08  Aligned_cols=81  Identities=12%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             cHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.++++++.+ ++.+....+.+.+.++.+.++|+|+|+..+          .+.+. .+.++.+  .+|++.  |+.|
T Consensus        64 ~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p~----------~d~~v-~~~~~~~--g~~~i~--G~~t  128 (225)
T 1mxs_A           64 GLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDI-LEAGVDS--EIPLLP--GIST  128 (225)
T ss_dssp             HHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHH-HHHHHHC--SSCEEC--EECS
T ss_pred             HHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeCC----------CCHHH-HHHHHHh--CCCEEE--eeCC
Confidence            355788888877 444555556788999999999999997421          12222 3333444  567665  4999


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      +.++.+++.+|||.|.+
T Consensus       129 ~~e~~~A~~~Gad~vk~  145 (225)
T 1mxs_A          129 PSEIMMGYALGYRRFKL  145 (225)
T ss_dssp             HHHHHHHHTTTCCEEEE
T ss_pred             HHHHHHHHHCCCCEEEE
Confidence            99999999999999988

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.0011  Score=55.10  Aligned_cols=68  Identities=18%  Similarity=0.066  Sum_probs=55.4

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|++.+.+-.-.+       .+.+.+.++++.+  .+|+...|||++. |+.+.+ +||+-|.+|+..+.
T Consensus        41 ~~~A~~~~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~--~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~  108 (260)
T 2agk_A           41 SYYAKLYKDRDVQGCHVIKLGP-------NNDDAAREALQES--PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFT  108 (260)
T ss_dssp             HHHHHHHHHTTCTTCEEEEESS-------SCHHHHHHHHHHS--TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBC
T ss_pred             HHHHHHHHHcCCCEEEEEeCCC-------CCHHHHHHHHhcC--CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHh
Confidence            4678999999999988743211       3567788887776  7999999999987 999999 99999999998774

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=96.98  E-value=0.0045  Score=51.24  Aligned_cols=89  Identities=21%  Similarity=0.309  Sum_probs=65.1

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.+..+|+.+++||+.|.- .++.++..+..+|||+|.+...-   ++  ..++..+.+.++.+  .+.+++.  ++|
T Consensus        89 s~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~---l~--~~~l~~l~~~a~~l--Gl~~lvE--v~~  159 (251)
T 1i4n_A           89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARI---LT--AEQIKEIYEAAEEL--GMDSLVE--VHS  159 (251)
T ss_dssp             CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGG---SC--HHHHHHHHHHHHTT--TCEEEEE--ECS
T ss_pred             CHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEeccc---CC--HHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence            678999999999999999964 45556777999999999987641   10  12333333334444  4555553  679


Q ss_pred             HHHHHHHHHh-CCCEEEEcH
Q psy16780        131 GTDVFKALAL-GAKMVFVGR  149 (202)
Q Consensus       131 ~~D~~kal~~-GAd~V~ig~  149 (202)
                      .+++..++.+ |++.|++-.
T Consensus       160 ~eE~~~A~~l~g~~iIGinn  179 (251)
T 1i4n_A          160 REDLEKVFSVIRPKIIGINT  179 (251)
T ss_dssp             HHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHhcCCCCEEEEeC
Confidence            9999999999 999999865

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.93  E-value=0.0062  Score=50.30  Aligned_cols=72  Identities=22%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.++...++|+++|.+-.-.+  ..  ....+.+..+++.+  ++||+.-++|.+..++..++++|||+|.++...+
T Consensus        68 ~~~A~~~~~~GA~~isvlt~~~--~f--~G~~~~l~~i~~~v--~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l  139 (254)
T 1vc4_A           68 VEAALAYARGGARAVSVLTEPH--RF--GGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL  139 (254)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCS--SS--CCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred             HHHHHHHHHcCCCEEEEecchh--hh--ccCHHHHHHHHHhc--CCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence            5778999999999999843211  11  12455677777777  8999999999999999999999999999998766

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.89  E-value=0.0061  Score=52.23  Aligned_cols=95  Identities=18%  Similarity=0.053  Sum_probs=65.7

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEeccC---HHHHHHHHHcC--CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGILT---AEDAKIGVEMG--ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~---~~~a~~l~~aG--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      .+++...+.++++++. ++|+.+-....   .+.++.+.++|  ++.+.+....|    .....++.+..+++..+ ..|
T Consensus        78 ~~~~~~~~~i~~~~~~-g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~G----~~~~~~~~i~~lr~~~~-~~~  151 (336)
T 1ypf_A           78 FQPEKRISFIRDMQSR-GLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHG----HSNAVINMIQHIKKHLP-ESF  151 (336)
T ss_dssp             SSGGGHHHHHHHHHHT-TCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEECSSC----CSHHHHHHHHHHHHHCT-TSE
T ss_pred             CCCHHHHHHHHHHHhc-CCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEECCCC----CcHHHHHHHHHHHHhCC-CCE
Confidence            3566666677777653 66777764333   34567788999  99988754211    11345667888877762 244


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        122 VYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      |+ .|++.+.+++.++..+|||+|.++
T Consensus       152 vi-~G~v~s~e~A~~a~~aGad~Ivvs  177 (336)
T 1ypf_A          152 VI-AGNVGTPEAVRELENAGADATKVG  177 (336)
T ss_dssp             EE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             EE-ECCcCCHHHHHHHHHcCCCEEEEe
Confidence            54 566999999999999999999993

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=96.85  E-value=0.0063  Score=52.93  Aligned_cols=69  Identities=14%  Similarity=0.082  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+.++.+.++|+|.|+++...|..    ...++.+..+++.. +++||++ |++.|.+++.++..+|||+|.+|
T Consensus       101 ~~e~~~~a~~aGvdvI~id~a~G~~----~~~~e~I~~ir~~~-~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg  169 (361)
T 3r2g_A          101 ELQRAEALRDAGADFFCVDVAHAHA----KYVGKTLKSLRQLL-GSRCIMA-GNVATYAGADYLASCGADIIKAG  169 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSCCSS----HHHHHHHHHHHHHH-TTCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCCc----HhHHHHHHHHHHhc-CCCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence            4577899999999999986533321    12345677777765 3688888 67999999999999999999985

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=96.83  E-value=0.0013  Score=52.21  Aligned_cols=104  Identities=17%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeeccC--------cC-------CCCC----
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNHG--------GR-------QLDY----  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~g--------g~-------~~~~----  101 (202)
                      ++-....+.++.+++. ++||++=.-      .+..-++-+...++|+|+-+-..        |-       -.|+    
T Consensus        40 g~I~~L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGIIsTk~~~i~~Akk~GL~tIqR~FliDs~al~  118 (188)
T 1vkf_A           40 SDILNLKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITIKPKNYVVAKKNGIPAVLRFFALDSKAVE  118 (188)
T ss_dssp             EETTTHHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEESCHHHHHHHHHTTCCEEEEEECCSHHHHH
T ss_pred             CcHHHHHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHHHhcCCCEEEcCcHHHHHHHHHcCCEEeeEEEEEEeHHHh
Confidence            3333345578888777 888887532      23444555556688887643210        10       0110    


Q ss_pred             -------------c--cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780        102 -------------V--PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus       102 -------------~--~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                                   .  .|.. ..+++.+.+ .++|+|+.|+|++.+|+.+ +.+||++|..++.-+|.
T Consensus       119 ~~~~~I~~~kPD~iEiLPg~-v~p~~I~~v-~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~  183 (188)
T 1vkf_A          119 RGIEQIETLGVDVVEVLPGA-VAPKVARKI-PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK  183 (188)
T ss_dssp             HHHHHHHHHTCSEEEEESGG-GHHHHHTTS-TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred             hhhhhccccCCCeEeecCCC-chHHHHHHh-cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence                         0  0110 022333333 4789999999999999999 99999999999987774

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=96.82  E-value=0.0078  Score=50.91  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+.+++|||+--|=.+..++++    +-.+|||++++-.|
T Consensus        41 ~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P  120 (304)
T 3cpr_A           41 EVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP  120 (304)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            446778899999999988766432212222 2344555666777899987444344444443    23479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      ++..   -..+++.++++.+
T Consensus       121 ~y~~---~~~~~l~~~f~~i  137 (304)
T 3cpr_A          121 YYSK---PSQEGLLAHFGAI  137 (304)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            7742   2345454444444

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=96.82  E-value=0.006  Score=51.61  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=59.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+--|=.+..++++    +-.+|||++++-.|
T Consensus        36 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  115 (303)
T 2wkj_A           36 RLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP  115 (303)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCC
Confidence            446778899999999987655322111111 2244555666777899997433334444443    23479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      +++.   -..+++.++++.+.+.
T Consensus       116 ~y~~---~s~~~l~~~f~~va~a  135 (303)
T 2wkj_A          116 FYYP---FSFEEHCDHYRAIIDS  135 (303)
T ss_dssp             CSSC---CCHHHHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHHHHh
Confidence            8753   2456666666555443

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=96.81  E-value=0.0058  Score=51.43  Aligned_cols=93  Identities=19%  Similarity=0.229  Sum_probs=58.2

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        27 ~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  106 (292)
T 3daq_A           27 AHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITP  106 (292)
T ss_dssp             HHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence            446778899999999988655322111111 2244555666777899998555455566554    33479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      +++.   -..+++.++++.+.
T Consensus       107 ~y~~---~~~~~l~~~f~~ia  124 (292)
T 3daq_A          107 YYNK---TNQRGLVKHFEAIA  124 (292)
T ss_dssp             CSSC---CCHHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHHH
Confidence            8753   23444444444443

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=96.79  E-value=0.0062  Score=51.33  Aligned_cols=92  Identities=14%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++.    -.+|||++++-.|
T Consensus        32 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  111 (297)
T 3flu_A           32 DLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVP  111 (297)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence            346778899999999988765322111112 22345556667778999984444455555433    3479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       112 ~y~~---~~~~~l~~~f~~v  128 (297)
T 3flu_A          112 YYNK---PSQEGIYQHFKTI  128 (297)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8752   1334444444443

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=96.78  E-value=0.0065  Score=51.00  Aligned_cols=92  Identities=20%  Similarity=0.283  Sum_probs=55.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+.+.+++++|||+--|=.+..++++    +-.+|||++++-.|
T Consensus        25 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  104 (289)
T 2yxg_A           25 ENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITP  104 (289)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            446778899999999987655322111111 2344555666777899987434334444443    23479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       105 ~y~~---~s~~~l~~~f~~i  121 (289)
T 2yxg_A          105 YYNK---PTQEGLRKHFGKV  121 (289)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8742   2344444444443

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=96.77  E-value=0.0057  Score=51.81  Aligned_cols=78  Identities=24%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+.+++|||+.-|=.+..++++..    .+|||++++..|
T Consensus        40 ~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  119 (304)
T 3l21_A           40 RLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP  119 (304)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence            446778899999999988665322111111 224455566677799999854444555555433    379999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       120 ~y~  122 (304)
T 3l21_A          120 YYS  122 (304)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            875

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=96.77  E-value=0.0064  Score=51.12  Aligned_cols=93  Identities=12%  Similarity=0.161  Sum_probs=57.2

Q ss_pred             HHHHHHHH-cCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcH
Q psy16780         76 EDAKIGVE-MGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~-aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~  149 (202)
                      ..++.+++ .|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++-.
T Consensus        28 ~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~  107 (293)
T 1f6k_A           28 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT  107 (293)
T ss_dssp             HHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence            44677888 9999999987655322111111 2344555666777999988444444455443    3347999999999


Q ss_pred             HHHHHhhhcChHHHHHHHHHHH
Q psy16780        150 PALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       150 ~~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      |+++.   -..+++.++++.+.
T Consensus       108 P~y~~---~~~~~l~~~f~~va  126 (293)
T 1f6k_A          108 PFYYK---FSFPEIKHYYDTII  126 (293)
T ss_dssp             CCSSC---CCHHHHHHHHHHHH
T ss_pred             CCCCC---CCHHHHHHHHHHHH
Confidence            98753   23455555544443

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=96.77  E-value=0.02  Score=49.71  Aligned_cols=94  Identities=16%  Similarity=0.149  Sum_probs=72.3

Q ss_pred             CccccHHHHHHHHHhc-CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         48 DETINWSDVTWLKTIT-KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~-~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ++++..+.++.+|+.+ ++|+.+...  .+.++    ++.+.+.|++.|.=-      .  .+.+++.+.++++.+  ++
T Consensus       173 ~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iEqP------~--~~~~~~~~~~l~~~~--~i  242 (384)
T 2pgw_A          173 GEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQP------T--VSWSIPAMAHVREKV--GI  242 (384)
T ss_dssp             CHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC------S--CTTCHHHHHHHHHHC--SS
T ss_pred             CHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEeCC------C--ChhhHHHHHHHHhhC--CC
Confidence            5566788999999988 688888743  45444    466778898887510      0  133677788888777  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                      ||++++.+.+..++.+++..| +|+|++....
T Consensus       243 PI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~  274 (384)
T 2pgw_A          243 PIVADQAAFTLYDVYEICRQRAADMICIGPRE  274 (384)
T ss_dssp             CEEESTTCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred             CEEEeCCcCCHHHHHHHHHcCCCCEEEEcchh
Confidence            999999999999999999986 8999997643

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=96.74  E-value=0.0066  Score=51.09  Aligned_cols=78  Identities=18%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        25 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  104 (294)
T 2ehh_A           25 NLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVP  104 (294)
T ss_dssp             HHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            446778899999999987655322111111 2344555666777899987444344444443    23479999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       105 ~y~  107 (294)
T 2ehh_A          105 YYN  107 (294)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            874

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=96.74  E-value=0.006  Score=51.55  Aligned_cols=92  Identities=15%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+.+++|||+--|=.+..++++    +-.+|||++++-.|
T Consensus        37 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  116 (301)
T 1xky_A           37 KLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP  116 (301)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            346778899999999987655322111111 2244555666777899987444334444443    33479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       117 ~y~~---~s~~~l~~~f~~v  133 (301)
T 1xky_A          117 YYNK---PSQEGMYQHFKAI  133 (301)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8742   1334444444433

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=96.73  E-value=0.0057  Score=52.08  Aligned_cols=92  Identities=13%  Similarity=0.188  Sum_probs=57.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++.    -.+|||++++..|
T Consensus        48 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P  127 (314)
T 3qze_A           48 KLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTP  127 (314)
T ss_dssp             HHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            345678899999999987655322111112 22345556667778999984444455555543    3479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       128 ~y~~---~s~~~l~~~f~~v  144 (314)
T 3qze_A          128 YYNK---PTQEGMYQHFRHI  144 (314)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8752   2344444444443

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=96.70  E-value=0.007  Score=50.85  Aligned_cols=92  Identities=14%  Similarity=0.245  Sum_probs=57.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        26 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  105 (291)
T 3tak_A           26 KLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTP  105 (291)
T ss_dssp             HHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            446778899999999987655322111111 2244555666777899998444445555554    33479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       106 ~y~~---~~~~~l~~~f~~i  122 (291)
T 3tak_A          106 YYNK---PTQEGLYQHYKAI  122 (291)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8752   2344444444443

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=96.70  E-value=0.0065  Score=52.11  Aligned_cols=91  Identities=10%  Similarity=0.032  Sum_probs=55.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHH----HHHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVYL-DGGVRYGTDVFK----ALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipiia-~GGI~~~~D~~k----al~~GAd~V~ig~  149 (202)
                      ..++.+++.|+|+|.+.|+.|....-... -.+.+..+++.+++++|||+ .|+.. ..++++    +-.+|||++++..
T Consensus        59 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~s-t~eai~la~~A~~~Gadavlv~~  137 (332)
T 2r8w_A           59 ALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALR-TDEAVALAKDAEAAGADALLLAP  137 (332)
T ss_dssp             HHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSS-HHHHHHHHHHHHHHTCSEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC-HHHHHHHHHHHHhcCCCEEEECC
Confidence            44677889999999998866532211111 12344555666777899987 44444 444443    3347999999999


Q ss_pred             HHHHHhhhcChHHHHHHHHHH
Q psy16780        150 PALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       150 ~~l~~~~~~G~~~v~~~i~~l  170 (202)
                      |+++.   -..+++.++++.+
T Consensus       138 P~Y~~---~s~~~l~~~f~~V  155 (332)
T 2r8w_A          138 VSYTP---LTQEEAYHHFAAV  155 (332)
T ss_dssp             CCSSC---CCHHHHHHHHHHH
T ss_pred             CCCCC---CCHHHHHHHHHHH
Confidence            98742   2344444444443

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.70  E-value=0.011  Score=49.56  Aligned_cols=72  Identities=18%  Similarity=0.082  Sum_probs=57.0

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...++||++|.|-.-.+  ..+  ...+.+..+++.+  ++||+.-+.|.+..++.++.++|||+|.+....+
T Consensus        82 ~~~A~~y~~~GA~~IsVltd~~--~f~--Gs~~~L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L  153 (272)
T 3tsm_A           82 PALAKAYEEGGAACLSVLTDTP--SFQ--GAPEFLTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASV  153 (272)
T ss_dssp             HHHHHHHHHTTCSEEEEECCST--TTC--CCHHHHHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred             HHHHHHHHHCCCCEEEEecccc--ccC--CCHHHHHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence            3678899999999998854211  111  2456677777777  8999999999999999999999999999987655

>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1

Probab=96.70  E-value=0.04  Score=44.91  Aligned_cols=106  Identities=17%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH---HHHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE---IAKAVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~---i~~~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=.+++.+++..+.++|++++...-  ||-.+.+.+....+.+   +.+..+.+..+++. ++|++.++.++..+
T Consensus       113 GI~vNvTliFS~~QA~laa~AGa~~iSpFV--gRidd~g~dG~~~v~~i~~~~~~~~~~t~iL~A-S~r~~~~v~~~~l~  189 (230)
T 1vpx_A          113 GIKTNVTLVFSPAQAILAAKAGATYVSPFV--GRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAA-SIRHPMHVVEAALM  189 (230)
T ss_dssp             TCCEEEEEECSHHHHHHHHHHTCSEEEEBH--HHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-SCCSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHhCCCeEEEecc--chhhhccccHHHHHHHHHHHHHHcCCCeEEEee-ccCCHHHHHHHHHh
Confidence            556655555677778778888888776532  2322222223333433   33444335667775 49999999999999


Q ss_pred             CCCEEEEcHHHHHHhhhcC--hHHHHHHHHHHHH
Q psy16780        141 GAKMVFVGRPALWGLAHSG--KSGVRKVLDILIN  172 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~~~G--~~~v~~~i~~l~~  172 (202)
                      |+|.+-+.-..+..+...+  .++++.+.+.|.+
T Consensus       190 G~d~~Tip~~~l~~l~~h~lt~~gv~~F~~d~~~  223 (230)
T 1vpx_A          190 GVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKK  223 (230)
T ss_dssp             TCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEECCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999988887654333  2445555544443

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=96.69  E-value=0.0059  Score=51.53  Aligned_cols=92  Identities=13%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+--|=.+..++++    +-.+|||++++-.|
T Consensus        25 ~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  104 (297)
T 2rfg_A           25 GLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAG  104 (297)
T ss_dssp             HHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             HHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            446778899999999987655322111111 2244555666777899987434334444443    23479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       105 ~y~~---~s~~~l~~~f~~v  121 (297)
T 2rfg_A          105 YYNR---PSQEGLYQHFKMV  121 (297)
T ss_dssp             TTTC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8753   2345454444444

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=96.68  E-value=0.0085  Score=50.58  Aligned_cols=78  Identities=15%  Similarity=0.120  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCC-CcEEEEecCCCCHHHHHHH----HHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGH-KVDVYLDGGVRYGTDVFKA----LALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~-~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~  149 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++ ++|||+.-|=.+..++++.    -.+|||++++-.
T Consensus        32 ~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~  111 (301)
T 3m5v_A           32 RLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVA  111 (301)
T ss_dssp             HHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            446778899999999987655322111111 2245556677777 8999984444455555543    347999999999


Q ss_pred             HHHH
Q psy16780        150 PALW  153 (202)
Q Consensus       150 ~~l~  153 (202)
                      |+++
T Consensus       112 P~y~  115 (301)
T 3m5v_A          112 PYYN  115 (301)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9875

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=96.68  E-value=0.0046  Score=52.61  Aligned_cols=94  Identities=17%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+.+++|||+.-|- +..++++..    .+|||++++..|
T Consensus        37 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P  115 (316)
T 3e96_A           37 ETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMP  115 (316)
T ss_dssp             HHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             HHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            345678899999999987655322111111 22455556667779999986553 767766533    479999999998


Q ss_pred             HHHHhhhcChHHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      ++..   -..+++.++++.+.+.
T Consensus       116 ~y~~---~s~~~l~~~f~~va~a  135 (316)
T 3e96_A          116 IHPY---VTAGGVYAYFRDIIEA  135 (316)
T ss_dssp             CCSC---CCHHHHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHHHHh
Confidence            8642   2456666666665544

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=96.66  E-value=0.0065  Score=51.76  Aligned_cols=92  Identities=14%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        47 ~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P  126 (315)
T 3si9_A           47 NFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTP  126 (315)
T ss_dssp             HHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            346778899999999987655322111111 2244555666777899998444445555554    33479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       127 ~y~~---~~~~~l~~~f~~v  143 (315)
T 3si9_A          127 YYNR---PNQRGLYTHFSSI  143 (315)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8752   2334444444443

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.66  E-value=0.0095  Score=47.61  Aligned_cols=79  Identities=23%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      .+.++.+++ -++.+....+.+.+.++.+.++|+|+++..+          .+.+.+... +..  .+|++.  |+.|..
T Consensus        52 ~~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~----------~d~~v~~~~-~~~--g~~~i~--G~~t~~  115 (207)
T 2yw3_A           52 LEALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG----------LLEEVAALA-QAR--GVPYLP--GVLTPT  115 (207)
T ss_dssp             HHHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEESS----------CCHHHHHHH-HHH--TCCEEE--EECSHH
T ss_pred             HHHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC----------CCHHHHHHH-HHh--CCCEEe--cCCCHH
Confidence            467888887 5666666666788999999999999997532          122333333 334  466665  489999


Q ss_pred             HHHHHHHhCCCEEEE
Q psy16780        133 DVFKALALGAKMVFV  147 (202)
Q Consensus       133 D~~kal~~GAd~V~i  147 (202)
                      ++.++...|||.|.+
T Consensus       116 e~~~A~~~Gad~v~~  130 (207)
T 2yw3_A          116 EVERALALGLSALKF  130 (207)
T ss_dssp             HHHHHHHTTCCEEEE
T ss_pred             HHHHHHHCCCCEEEE
Confidence            999999999999988

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=96.65  E-value=0.0066  Score=51.54  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++..++++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        33 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  112 (309)
T 3fkr_A           33 RAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPP  112 (309)
T ss_dssp             HHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             HHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            346778899999999987655322111111 2244555666777999998544344444443    33479999999999


Q ss_pred             HH
Q psy16780        151 AL  152 (202)
Q Consensus       151 ~l  152 (202)
                      ++
T Consensus       113 yy  114 (309)
T 3fkr_A          113 YH  114 (309)
T ss_dssp             CB
T ss_pred             CC
Confidence            75

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=96.64  E-value=0.0057  Score=52.09  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++..|
T Consensus        49 ~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  128 (315)
T 3na8_A           49 RSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPI  128 (315)
T ss_dssp             HHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            446778899999999988655322111111 2244555666777899998444445555544    33479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       129 ~y~~---~s~~~l~~~f~~v  145 (315)
T 3na8_A          129 SYWK---LNEAEVFQHYRAV  145 (315)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8753   1334444444443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.63  E-value=0.0045  Score=55.44  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++++.++|+|.+++++.+|.    ....++.+.++++.+ +.+|++ .|++.+.+++.+++.+|||+|.+|
T Consensus       235 ~~~a~~l~~~G~d~ivi~~a~g~----~~~~~~~i~~l~~~~-p~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg  302 (491)
T 1zfj_A          235 FERAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHF-PNRTLI-AGNIATAEGARALYDAGVDVVKVG  302 (491)
T ss_dssp             HHHHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHC-SSSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEeeecCc----chhHHHHHHHHHHHC-CCCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence            68899999999999999774431    123455677777766 379998 899999999999999999999887

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=96.62  E-value=0.0074  Score=50.80  Aligned_cols=95  Identities=14%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+.+++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        28 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  107 (294)
T 3b4u_A           28 AHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPP  107 (294)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            446778899999999988655322111111 2234555666677899987433334444443    23479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++.  .-..+++.++++.+.+
T Consensus       108 ~y~~--~~s~~~l~~~f~~va~  127 (294)
T 3b4u_A          108 SYFK--NVSDDGLFAWFSAVFS  127 (294)
T ss_dssp             CSSC--SCCHHHHHHHHHHHHH
T ss_pred             cCCC--CCCHHHHHHHHHHHHH
Confidence            8752  0145656655555544

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=96.61  E-value=0.019  Score=46.03  Aligned_cols=89  Identities=16%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhcCCCEEE--E-e-------c-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         53 WSDVTWLKTITKLPIVL--K-G-------I-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~v--K-~-------~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      .+.++.+++.+++|++-  | .       + .+.+.++.+.++|+|.|.++.......+ +....+.+..+++.+ +..+
T Consensus        58 ~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~-~~~~~~~i~~i~~~~-~~~~  135 (234)
T 1yxy_A           58 VRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKY-PNQL  135 (234)
T ss_dssp             HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHC-TTCE
T ss_pred             HHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCC-CccHHHHHHHHHHhC-CCCe
Confidence            56899999999999852  1 1       1 2468899999999999988653211110 112245667776665 3566


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCEE
Q psy16780        122 VYLDGGVRYGTDVFKALALGAKMV  145 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~GAd~V  145 (202)
                      ++.  ++++.+++.++..+|||.|
T Consensus       136 v~~--~~~t~~ea~~a~~~Gad~i  157 (234)
T 1yxy_A          136 LMA--DISTFDEGLVAHQAGIDFV  157 (234)
T ss_dssp             EEE--ECSSHHHHHHHHHTTCSEE
T ss_pred             EEE--eCCCHHHHHHHHHcCCCEE
Confidence            665  6889999999999999999

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=96.59  E-value=0.0061  Score=51.23  Aligned_cols=78  Identities=13%  Similarity=0.085  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++..    .+|||++++-.|
T Consensus        26 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  105 (292)
T 2ojp_A           26 KLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP  105 (292)
T ss_dssp             HHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence            446778899999999988765322111111 234455566677789998744444445555433    269999999998


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       106 ~y~  108 (292)
T 2ojp_A          106 YYN  108 (292)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            774

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.58  E-value=0.0067  Score=55.25  Aligned_cols=69  Identities=23%  Similarity=0.299  Sum_probs=53.3

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+-+..|.++|+|.|++....|..    ...++.+..+++.+ ++++||+ |.|.|++-+...+.+|||+|-+|-
T Consensus       283 ~eR~~aLv~AGvD~iviD~ahGhs----~~v~~~i~~ik~~~-p~~~via-GNVaT~e~a~~Li~aGAD~vkVGi  351 (556)
T 4af0_A          283 KDRLKLLAEAGLDVVVLDSSQGNS----VYQIEFIKWIKQTY-PKIDVIA-GNVVTREQAAQLIAAGADGLRIGM  351 (556)
T ss_dssp             HHHHHHHHHTTCCEEEECCSCCCS----HHHHHHHHHHHHHC-TTSEEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHHHHHhcCCcEEEEecccccc----HHHHHHHHHHHhhC-CcceEEe-ccccCHHHHHHHHHcCCCEEeecC
Confidence            355788999999999998754432    22355677777665 5788887 889999999999999999997763

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=96.57  E-value=0.0067  Score=51.40  Aligned_cols=78  Identities=22%  Similarity=0.236  Sum_probs=50.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+--|=.+..++++    +-.+|||++++-.|
T Consensus        37 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P  116 (306)
T 1o5k_A           37 RLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP  116 (306)
T ss_dssp             HHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence            446778899999999988655322111111 2244555666777899987444344444443    33479999999998


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       117 ~y~  119 (306)
T 1o5k_A          117 YYN  119 (306)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            774

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=96.56  E-value=0.0058  Score=52.01  Aligned_cols=92  Identities=13%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHHH----HHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYL-DGGVRYGTDVFKA----LALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia-~GGI~~~~D~~ka----l~~GAd~V~ig~  149 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+.+++|||+ .|+  +..++++.    -.+|||++++-.
T Consensus        37 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~--st~~ai~la~~A~~~Gadavlv~~  114 (314)
T 3d0c_A           37 DNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY--SVDTAIELGKSAIDSGADCVMIHQ  114 (314)
T ss_dssp             HHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS--SHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc--CHHHHHHHHHHHHHcCCCEEEECC
Confidence            446778899999999977655322111111 2344555666777899987 555  55555433    347999999999


Q ss_pred             HHHHHhhhcChHHHHHHHHHHHH
Q psy16780        150 PALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       150 ~~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      |+++.   -..+++.++++.+.+
T Consensus       115 P~y~~---~s~~~l~~~f~~va~  134 (314)
T 3d0c_A          115 PVHPY---ITDAGAVEYYRNIIE  134 (314)
T ss_dssp             CCCSC---CCHHHHHHHHHHHHH
T ss_pred             CCCCC---CCHHHHHHHHHHHHH
Confidence            98753   234555555555443

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=96.56  E-value=0.0098  Score=50.69  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=49.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+.+++|||+--|=.+..++++.    -.+|||++++-.|
T Consensus        36 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  115 (318)
T 3qfe_A           36 RYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP  115 (318)
T ss_dssp             HHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             HHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            346778899999999988765322111111 22445556667778999984443455554433    3479999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       116 ~y~  118 (318)
T 3qfe_A          116 AYF  118 (318)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            654

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=96.56  E-value=0.0077  Score=51.90  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|+|.+.|+.|....-.... .+.+..+++.+.+++|||+--|=.+..++++    +-.+|||++++-.|
T Consensus        56 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P  135 (343)
T 2v9d_A           56 ALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINP  135 (343)
T ss_dssp             HHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            446778899999999987655322111111 2344555666777899987444344444443    33479999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       136 ~Y~  138 (343)
T 2v9d_A          136 YYW  138 (343)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            874

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=96.51  E-value=0.0082  Score=48.77  Aligned_cols=81  Identities=19%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEcHHHHHHh
Q psy16780         77 DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVGRPALWGL  155 (202)
Q Consensus        77 ~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig~~~l~~~  155 (202)
                      .++.+.+.|+++++++.+          ..+.+..+++..+.+.++ .++||+-. .+. +++.+|||.+.+||+++.+ 
T Consensus       142 ~a~~a~~~G~~GvV~~at----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a-  208 (228)
T 3m47_A          142 IARMGVDLGVKNYVGPST----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLA-  208 (228)
T ss_dssp             HHHHHHHTTCCEEECCSS----------CHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTS-
T ss_pred             HHHHHHHhCCcEEEECCC----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCC-
Confidence            356677888888877431          234556676666545666 77888753 467 8889999999999998642 


Q ss_pred             hhcChHHHHHHHHHHHHHHH
Q psy16780        156 AHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       156 ~~~G~~~v~~~i~~l~~~L~  175 (202)
                        ..+   .+.++.++++++
T Consensus       209 --~dp---~~a~~~~~~~~~  223 (228)
T 3m47_A          209 --DNP---AAAAAGAIESIK  223 (228)
T ss_dssp             --SCH---HHHHHHHHHHC-
T ss_pred             --CCH---HHHHHHHHHHHH
Confidence              222   344555555554

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=96.50  E-value=0.0079  Score=50.53  Aligned_cols=78  Identities=15%  Similarity=0.170  Sum_probs=49.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        25 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  104 (292)
T 2vc6_A           25 DLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSP  104 (292)
T ss_dssp             HHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            446778899999999987655322111111 2244555666677899987333334444443    33479999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       105 ~y~  107 (292)
T 2vc6_A          105 YYN  107 (292)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            774

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=96.46  E-value=0.0079  Score=51.66  Aligned_cols=92  Identities=15%  Similarity=0.160  Sum_probs=70.6

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++|+.++..  .+.++    ++.+.+.|++.|.=   +     ..+.+++.+.++++.+  +
T Consensus       171 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~---P-----~~~~~~~~~~~l~~~~--~  240 (359)
T 1mdl_A          171 ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEE---P-----TLQHDYEGHQRIQSKL--N  240 (359)
T ss_dssp             SHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEEC---C-----SCTTCHHHHHHHHHTC--S
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEC---C-----CChhhHHHHHHHHHhC--C
Confidence            5666778999999987  688988854  45544    56677889887741   0     1123677778887766  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||++++.+.+..++.+++..| +|+|++-.
T Consensus       241 iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~  271 (359)
T 1mdl_A          241 VPVQMGENWLGPEEMFKALSIGACRLAMPDA  271 (359)
T ss_dssp             SCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred             CCEEeCCCCCCHHHHHHHHHcCCCCEEeecc
Confidence            9999999999999999999986 89999864

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=96.44  E-value=0.011  Score=50.03  Aligned_cols=94  Identities=11%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++-.|
T Consensus        39 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  118 (307)
T 3s5o_A           39 ENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTP  118 (307)
T ss_dssp             HHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            345677889999999988765322111111 2244555666677899888444345555443    33479999999998


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.- .-..+++.++++.+
T Consensus       119 ~y~~~-~~s~~~l~~~f~~i  137 (307)
T 3s5o_A          119 CYYRG-RMSSAALIHHYTKV  137 (307)
T ss_dssp             CTTGG-GCCHHHHHHHHHHH
T ss_pred             CcCCC-CCCHHHHHHHHHHH
Confidence            87520 01345555555444

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.43  E-value=0.016  Score=45.77  Aligned_cols=80  Identities=19%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhcCCCEEEEe--ccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKG--ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~--~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      .+.++++++.+++|++++.  +.+.+.++.+.++|+|+|.+..          .+.+.+. .++.+  ..+++..  ++|
T Consensus        46 ~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~----------~~~~~~~-~~~~~--g~~~~~g--~~t  110 (212)
T 2v82_A           46 EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPN----------IHSEVIR-RAVGY--GMTVCPG--CAT  110 (212)
T ss_dssp             HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSS----------CCHHHHH-HHHHT--TCEEECE--ECS
T ss_pred             HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCC----------CCHHHHH-HHHHc--CCCEEee--cCC
Confidence            4577788877788988853  3678899999999999997422          1223333 33444  4555542  899


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      .+++.++..+|+|.|.+
T Consensus       111 ~~e~~~a~~~G~d~v~v  127 (212)
T 2v82_A          111 ATEAFTALEAGAQALKI  127 (212)
T ss_dssp             HHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHCCCCEEEE
Confidence            99999999999999987

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=96.41  E-value=0.014  Score=50.32  Aligned_cols=92  Identities=13%  Similarity=0.100  Sum_probs=70.5

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++|+.++..  .+.++    ++.+.+.|++.|.=-        ..+.+++.+.++++.+  +
T Consensus       173 ~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~  242 (371)
T 2ovl_A          173 DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIEEP--------TIPDDLVGNARIVRES--G  242 (371)
T ss_dssp             SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHH--C
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--C
Confidence            5556778999999987  689998854  45544    466677888877410        1123577788888777  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||++++.+.+..++.+++..| +|+|++-.
T Consensus       243 iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~  273 (371)
T 2ovl_A          243 HTIAGGENLHTLYDFHNAVRAGSLTLPEPDV  273 (371)
T ss_dssp             SCEEECTTCCSHHHHHHHHHHTCCSEECCCT
T ss_pred             CCEEeCCCCCCHHHHHHHHHcCCCCEEeeCc
Confidence            9999999999999999999986 89999864

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.41  E-value=0.0098  Score=53.59  Aligned_cols=68  Identities=22%  Similarity=0.248  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.+....+.    .....+.+.++++.+ +++||++ |++.+.+++..+..+|||+|.+|
T Consensus       231 ~~~a~~l~~aG~d~I~id~a~g~----~~~~~~~v~~i~~~~-p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg  298 (490)
T 4avf_A          231 GERVAALVAAGVDVVVVDTAHGH----SKGVIERVRWVKQTF-PDVQVIG-GNIATAEAAKALAEAGADAVKVG  298 (490)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCCS----BHHHHHHHHHHHHHC-TTSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHhhcccceEEecccCCc----chhHHHHHHHHHHHC-CCceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence            57789999999999999754331    123455677777766 3688888 77999999999999999999985

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=96.40  E-value=0.019  Score=48.76  Aligned_cols=93  Identities=12%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+ +++|||+.-|=.+..++++.    -.+|||++++-.|
T Consensus        33 ~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P  111 (313)
T 3dz1_A           33 RLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPP  111 (313)
T ss_dssp             HHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             HHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence            446778899999999987655322111111 23455556667 79999984444455555433    3479999999988


Q ss_pred             HHHHhhhcChHHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      +.+    ...+++.++++.+.+.
T Consensus       112 ~~~----~s~~~l~~~f~~va~a  130 (313)
T 3dz1_A          112 PSL----RTDEQITTYFRQATEA  130 (313)
T ss_dssp             TTC----CSHHHHHHHHHHHHHH
T ss_pred             CCC----CCHHHHHHHHHHHHHh
Confidence            732    2455555555554443

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.38  E-value=0.02  Score=47.79  Aligned_cols=71  Identities=23%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.|+...+.||++|.|-.-.+  .  -....+.+..+++.+  ++||+.-+.|.+..++..+.++|||+|.++.+.+
T Consensus        76 ~~A~~y~~~GA~~isvltd~~--~--f~Gs~~~l~~ir~~v--~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l  146 (272)
T 3qja_A           76 KLAQAYQDGGARIVSVVTEQR--R--FQGSLDDLDAVRASV--SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL  146 (272)
T ss_dssp             HHHHHHHHTTCSEEEEECCGG--G--HHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS
T ss_pred             HHHHHHHHcCCCEEEEecChh--h--cCCCHHHHHHHHHhC--CCCEEECccccCHHHHHHHHHcCCCEEEEecccC
Confidence            668888899999999853211  0  011345677777777  8999999999999999999999999999975443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.32  E-value=0.011  Score=53.32  Aligned_cols=69  Identities=20%  Similarity=0.300  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+.++.+.++|+|.|.+....+.    .....+.+.++++.+ +++||++ |++.+.+++..+..+|||+|.++
T Consensus       232 ~~~~a~~l~~aG~d~I~id~a~g~----~~~~~~~i~~ir~~~-p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg  300 (496)
T 4fxs_A          232 NEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAY-PHLEIIG-GNVATAEGARALIEAGVSAVKVG  300 (496)
T ss_dssp             CHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHC-TTCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             hHHHHHHHHhccCceEEecccccc----chHHHHHHHHHHHHC-CCceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence            478899999999999999764321    122445677777766 3688888 77999999999999999999985

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=96.31  E-value=0.0074  Score=53.16  Aligned_cols=67  Identities=30%  Similarity=0.380  Sum_probs=50.8

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.++++|+|.|++..+.|.    .....+.+.++++.+  .+||++ |++.+.+++.++..+|||+|.+|
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~----~~~~~e~I~~ik~~~--~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG  212 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKELIENGADGIKVG  212 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCS----BHHHHHHHHHHHTTC--CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCC----cccHHHHHHHHHhcC--CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence            57889999999999988543221    011245566665554  688887 67899999999999999999995

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=96.29  E-value=0.0045  Score=52.29  Aligned_cols=92  Identities=12%  Similarity=0.042  Sum_probs=55.4

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++    +-.+|||++++..|
T Consensus        29 ~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P  108 (300)
T 3eb2_A           29 RLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILE  108 (300)
T ss_dssp             HHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             HHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            346778899999999877655321111111 2244555666777899887333234444443    33479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      +++.   -..+++.++++.+
T Consensus       109 ~y~~---~~~~~l~~~f~~v  125 (300)
T 3eb2_A          109 AYFP---LKDAQIESYFRAI  125 (300)
T ss_dssp             CSSC---CCHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            8753   2344444444443

>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1

Probab=96.29  E-value=0.081  Score=42.78  Aligned_cols=102  Identities=11%  Similarity=0.116  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH---HHHHhCCCcEEEEecC
Q psy16780         53 WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE---IAKAVGHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~---i~~~~~~~ipiia~GG  127 (202)
                      ++=++.++...  ++++-+=.+++.+.+..+.++|++.+...-  ||-.+.+.+....+.+   +.+..+.+..+++. +
T Consensus        90 ~eGl~A~~~L~~~GI~vn~TliFS~~QA~~aa~AGa~~iSpfv--gRidd~g~~G~~~i~~~~~~y~~~~~~t~il~A-S  166 (220)
T 1l6w_A           90 AEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYV--NRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA-S  166 (220)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECSHHHHHHHHHHTCSEEEEBH--HHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-C
T ss_pred             HHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEecc--chhhcccccHHHHHHHHHHHHHhcCCCeEEeec-c
Confidence            44444443322  677777777888888888899988876532  3322222233344443   33433335666665 6


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhhh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLAH  157 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~~  157 (202)
                      +|++.++.++..+|+|.+-+.-.++..+..
T Consensus       167 ~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~  196 (220)
T 1l6w_A          167 FKTPRQALDCLLAGCESITLPLDVAQQMIS  196 (220)
T ss_dssp             CSSHHHHHHHHHTTCSEEEECHHHHHHTTC
T ss_pred             cCCHHHHHHHHHhCCCeEECCHHHHHHHHc
Confidence            999999999999999999999888876543

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=96.26  E-value=0.016  Score=49.12  Aligned_cols=78  Identities=12%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCC-CEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGA-KMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GA-d~V~ig~  149 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+.+.+++++|||+.-|=.+..++++.    -.+|| |++++..
T Consensus        32 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~  111 (311)
T 3h5d_A           32 ALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIV  111 (311)
T ss_dssp             HHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEEC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcC
Confidence            456788999999999988765322111111 22445556667778999995554455555543    23697 9999999


Q ss_pred             HHHH
Q psy16780        150 PALW  153 (202)
Q Consensus       150 ~~l~  153 (202)
                      |+++
T Consensus       112 P~y~  115 (311)
T 3h5d_A          112 PYYN  115 (311)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9875

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=96.21  E-value=0.014  Score=50.67  Aligned_cols=92  Identities=15%  Similarity=0.195  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+.-|=.+..++++.    -++|||++++-.|
T Consensus        84 ~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~P  163 (360)
T 4dpp_A           84 DLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP  163 (360)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            346778899999999987655322111111 22445556667779999984443445555433    3479999999998


Q ss_pred             HHHHhhhcChHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l  170 (202)
                      ++..   -..+++.++++.+
T Consensus       164 yY~k---~sq~gl~~hf~~I  180 (360)
T 4dpp_A          164 YYGK---TSIEGLIAHFQSV  180 (360)
T ss_dssp             CSSC---CCHHHHHHHHHTT
T ss_pred             CCCC---CCHHHHHHHHHHH
Confidence            7642   2345555554444

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=96.18  E-value=0.0069  Score=49.62  Aligned_cols=100  Identities=10%  Similarity=-0.016  Sum_probs=60.4

Q ss_pred             cHHHHHHHHHhc--------CCCEEEEec-cCH-HHHHHHHHcCCcEEEe-eccCcCC-CCCccchHHHHHHHHHHhCC-
Q psy16780         52 NWSDVTWLKTIT--------KLPIVLKGI-LTA-EDAKIGVEMGASAIMV-SNHGGRQ-LDYVPASIEALPEIAKAVGH-  118 (202)
Q Consensus        52 ~~~~i~~i~~~~--------~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v-~~~gg~~-~~~~~~~~~~l~~i~~~~~~-  118 (202)
                      ..+.++++++..        ++-+.+=+. .|+ +.++.. ..++|.|.+ +-+.|.. ....+...+.++++++.... 
T Consensus       106 ~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~-l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~  184 (237)
T 3cu2_A          106 FALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPY-LDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNR  184 (237)
T ss_dssp             HHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTT-TTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHH-hhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhc
Confidence            345777776541        333333222 233 233333 347998865 2222221 11123345556666665532 


Q ss_pred             --CcEEEEecCCCCHHHHHHHHH--hCCCEEEEcHHHHH
Q psy16780        119 --KVDVYLDGGVRYGTDVFKALA--LGAKMVFVGRPALW  153 (202)
Q Consensus       119 --~ipiia~GGI~~~~D~~kal~--~GAd~V~ig~~~l~  153 (202)
                        ++||.++|||. .+.+.++..  +|||.+.+||+++.
T Consensus       185 ~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~  222 (237)
T 3cu2_A          185 RVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFS  222 (237)
T ss_dssp             GGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGS
T ss_pred             CCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhC
Confidence              58999999997 788999999  99999999999873

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=96.17  E-value=0.0073  Score=50.73  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~  150 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.+..+++.+++++|||+--|=.+..++++.    -.+|||++++-.|
T Consensus        26 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P  105 (291)
T 3a5f_A           26 ELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITP  105 (291)
T ss_dssp             HHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            446778899999999988655322111111 23445556667778999874443444554432    3479999999998


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       106 ~y~  108 (291)
T 3a5f_A          106 YYN  108 (291)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.11  E-value=0.017  Score=52.07  Aligned_cols=68  Identities=16%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.++...|..    ...++.+..+++.+ +++||++ |++.+.+++.++..+|||++.+|
T Consensus       257 ~~~a~~~~~aG~d~v~i~~~~G~~----~~~~~~i~~i~~~~-~~~pvi~-~~v~t~~~a~~l~~aGad~I~vg  324 (514)
T 1jcn_A          257 KYRLDLLTQAGVDVIVLDSSQGNS----VYQIAMVHYIKQKY-PHLQVIG-GNVVTAAQAKNLIDAGVDGLRVG  324 (514)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCCS----HHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEeeccCCcc----hhHHHHHHHHHHhC-CCCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence            567888999999999995543311    12356678887776 4789987 77999999999999999999773

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=96.03  E-value=0.022  Score=48.39  Aligned_cols=62  Identities=23%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH----------HHHHHHHhCCCEEEE
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT----------DVFKALALGAKMVFV  147 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~----------D~~kal~~GAd~V~i  147 (202)
                      ++.+.++|+|+++.+..          .   +..+++.++ .-.++.++||+-..          .+.+++.+|||.+.+
T Consensus       164 A~~a~~~G~dGvV~s~~----------E---~~~IR~~~~-~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVv  229 (303)
T 3ru6_A          164 SKISYENGLDGMVCSVF----------E---SKKIKEHTS-SNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVV  229 (303)
T ss_dssp             HHHHHHTTCSEEECCTT----------T---HHHHHHHSC-TTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEE
T ss_pred             HHHHHHcCCCEEEECHH----------H---HHHHHHhCC-CccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEE
Confidence            45567899999877431          1   345555554 34488899998321          466778899999999


Q ss_pred             cHHHHH
Q psy16780        148 GRPALW  153 (202)
Q Consensus       148 g~~~l~  153 (202)
                      ||+++.
T Consensus       230 Gr~I~~  235 (303)
T 3ru6_A          230 GRPIYK  235 (303)
T ss_dssp             CHHHHT
T ss_pred             ChHHhC
Confidence            999875

>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1

Probab=96.02  E-value=0.064  Score=43.47  Aligned_cols=91  Identities=24%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH---HHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI---AKAVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i---~~~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=++++.+++..+.++|++.+...  -||-.+.+.+....+.++   .+..+.+..+++. ++|++.++.++..+
T Consensus       110 GI~vN~TliFS~~Qa~~aa~AGa~~iSpF--VgRidd~g~~G~~~v~~i~~~~~~~~~~t~vl~A-S~r~~~~v~~~~l~  186 (223)
T 1wx0_A          110 GIKVNMTLIFSANQALLAARAGASYVSPF--LGRVDDISWDGGELLREIVEMIQVQDLPVKVIAA-SIRHPRHVTEAALL  186 (223)
T ss_dssp             TCCEEEEEECSHHHHHHHHHTTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEB-CCCSHHHHHHHHHT
T ss_pred             CCcEEEEEeCCHHHHHHHHHCCCeEEEec--cchHhhcCCCHHHHHHHHHHHHHHcCCCeEEeec-ccCCHHHHHHHHHh
Confidence            66776666678888888888888877653  233222233334444444   3333335566665 69999999999999


Q ss_pred             CCCEEEEcHHHHHHhhh
Q psy16780        141 GAKMVFVGRPALWGLAH  157 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~~  157 (202)
                      |+|.+-+.-.++..+..
T Consensus       187 G~d~~Tip~~~l~~l~~  203 (223)
T 1wx0_A          187 GADIATMPHAVFKQLLK  203 (223)
T ss_dssp             TCSEEEECHHHHHHHTC
T ss_pred             CCCEEECCHHHHHHHHc
Confidence            99999999888876543

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=96.00  E-value=0.013  Score=50.46  Aligned_cols=92  Identities=17%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRPA  151 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~~  151 (202)
                      ..++.+++.|+|+|.+.|+.|....-.......+.+.  .+.+++|||+--|=.+..++++    +-.+|||++++-.|+
T Consensus        51 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~  128 (344)
T 2hmc_A           51 RKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRV  128 (344)
T ss_dssp             HHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred             HHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            3456788999999999876553211111122222232  3456899987444344444443    334799999999998


Q ss_pred             HHHhhhcChHHHHHHHHHHH
Q psy16780        152 LWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       152 l~~~~~~G~~~v~~~i~~l~  171 (202)
                      ++.  .-..+++.++++.+.
T Consensus       129 y~~--~~s~~~l~~~f~~IA  146 (344)
T 2hmc_A          129 LSR--GSVIAAQKAHFKAIL  146 (344)
T ss_dssp             SSS--TTCHHHHHHHHHHHH
T ss_pred             cCC--CCCHHHHHHHHHHHH
Confidence            752  013455555544443

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=95.95  E-value=0.041  Score=45.63  Aligned_cols=78  Identities=24%  Similarity=0.415  Sum_probs=50.7

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH----H------HHHHHHhCCCEEEE
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT----D------VFKALALGAKMVFV  147 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~----D------~~kal~~GAd~V~i  147 (202)
                      ++.+.++|+|+++.+.             ..+..+++.+++ -.++.+.||+-..    |      +.+++.+|||.+.+
T Consensus       150 A~~a~~~G~dGvV~s~-------------~e~~~ir~~~~~-~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVv  215 (259)
T 3tfx_A          150 AKMAKHSGADGVICSP-------------LEVKKLHENIGD-DFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVV  215 (259)
T ss_dssp             HHHHHHTTCCEEECCG-------------GGHHHHHHHHCS-SSEEEECCCCCC-----------CHHHHHHTTCSEEEE
T ss_pred             HHHHHHhCCCEEEECH-------------HHHHHHHhhcCC-ccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEE
Confidence            4556788999998742             123444555543 3467889998542    2      77888999999999


Q ss_pred             cHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        148 GRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       148 g~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      ||+++.+   ..+   .+.++.++++++
T Consensus       216 Gr~I~~a---~dp---~~a~~~i~~~~~  237 (259)
T 3tfx_A          216 GRPITLA---SDP---KAAYEAIKKEFN  237 (259)
T ss_dssp             CHHHHTS---SSH---HHHHHHHHHHHT
T ss_pred             ChHHhCC---CCH---HHHHHHHHHHHH
Confidence            9998752   222   344556665544

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=95.93  E-value=0.0042  Score=52.06  Aligned_cols=79  Identities=24%  Similarity=0.301  Sum_probs=57.5

Q ss_pred             HhcCCCEEEEeccCHHHHHHHHHcCCcEEEeec--------cCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         61 TITKLPIVLKGILTAEDAKIGVEMGASAIMVSN--------HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        61 ~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~--------~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +....|+++ .+...+.++.+.++|+++|.+..        .+|..   .....+.+.++++.+  ++|++...++.+.+
T Consensus        18 ~~~~~~~i~-~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~---~~~~~~~i~~i~~~~--~~Pvi~~~~~~~~~   91 (297)
T 2zbt_A           18 EMFKGGVIM-DVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA---RMSDPKIIKEIMAAV--SIPVMAKVRIGHFV   91 (297)
T ss_dssp             GGGTTEEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC---CCCCHHHHHHHHTTC--SSCEEEEEETTCHH
T ss_pred             HHhhCCeee-eechHHHHHHHHHCCCcEEEeccccchHHHhhcCCc---cCCCHHHHHHHHHhc--CCCeEEEeccCCHH
Confidence            344678876 44568999999999999998721        11111   122455677776655  79999988888888


Q ss_pred             HHHHHHHhCCCEE
Q psy16780        133 DVFKALALGAKMV  145 (202)
Q Consensus       133 D~~kal~~GAd~V  145 (202)
                      ++..++++|||+|
T Consensus        92 ~~~~~~~aGad~v  104 (297)
T 2zbt_A           92 EAMILEAIGVDFI  104 (297)
T ss_dssp             HHHHHHHTTCSEE
T ss_pred             HHHHHHHCCCCEE
Confidence            9999999999999

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=95.93  E-value=0.041  Score=49.80  Aligned_cols=68  Identities=19%  Similarity=0.269  Sum_probs=52.3

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.+....+.    ....++.+.++++.+ +++||++ |+|.+.+++.++..+|||+|.+|
T Consensus       258 ~era~aLveaGvd~I~Id~a~g~----~~~v~~~i~~i~~~~-~~~~vi~-g~v~t~e~a~~~~~aGad~i~vg  325 (511)
T 3usb_A          258 MTRIDALVKASVDAIVLDTAHGH----SQGVIDKVKEVRAKY-PSLNIIA-GNVATAEATKALIEAGANVVKVG  325 (511)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHC-TTSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHhhccceEEecccccc----hhhhhhHHHHHHHhC-CCceEEe-eeeccHHHHHHHHHhCCCEEEEC
Confidence            57788899999999999764321    122445677777766 3588886 77999999999999999999873

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=95.93  E-value=0.059  Score=45.61  Aligned_cols=85  Identities=19%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEeccC--------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGILT--------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~--------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ++...+.++++++.++.|+.+-+..+        .+.++.+.+.|+|.|.++..        .+ .+.+..+++.   .+
T Consensus        52 ~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g--------~p-~~~~~~l~~~---gi  119 (328)
T 2gjl_A           52 PEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGN--------DP-GEHIAEFRRH---GV  119 (328)
T ss_dssp             HHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEES--------CC-HHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCC--------Cc-HHHHHHHHHc---CC
Confidence            55556778889888888887765543        36788899999999998542        11 3445555442   68


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      |++.  .+.+.+++.++...|+|++.+
T Consensus       120 ~vi~--~v~t~~~a~~~~~~GaD~i~v  144 (328)
T 2gjl_A          120 KVIH--KCTAVRHALKAERLGVDAVSI  144 (328)
T ss_dssp             EEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred             CEEe--eCCCHHHHHHHHHcCCCEEEE
Confidence            8885  378999999999999999988

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=95.88  E-value=0.016  Score=50.36  Aligned_cols=92  Identities=13%  Similarity=0.028  Sum_probs=69.7

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      ++++ .+.++.+|+.+  ++|+.++..  .+.++    ++.+.+.|++.|.=   +     ..+.+++.+.++++.+  +
T Consensus       191 ~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--~  259 (388)
T 2nql_A          191 DDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAEA---P-----VWTEDIAGLEKVSKNT--D  259 (388)
T ss_dssp             TTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEEC---C-----SCTTCHHHHHHHHTSC--C
T ss_pred             ChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEEC---C-----CChhhHHHHHHHHhhC--C
Confidence            5677 89999999987  689998854  45544    45667788887741   0     1123567777777665  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +||++++.+.+..++.+++..| +|+|++-..
T Consensus       260 iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~  291 (388)
T 2nql_A          260 VPIAVGEEWRTHWDMRARIERCRIAIVQPEMG  291 (388)
T ss_dssp             SCEEECTTCCSHHHHHHHHTTSCCSEECCCHH
T ss_pred             CCEEEeCCcCCHHHHHHHHHcCCCCEEEecCC
Confidence            9999999999999999999987 899998543

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=95.84  E-value=0.024  Score=49.06  Aligned_cols=89  Identities=11%  Similarity=0.014  Sum_probs=66.9

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      ++++..+.++.+|+.+  ++|+.++..  .+.+++    +.+.+.|+ .|.       +.   .++++.+.++++.+  +
T Consensus       171 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------~P---~~~~~~~~~l~~~~--~  237 (379)
T 2rdx_A          171 DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILE-------QP---CRSYEECQQVRRVA--D  237 (379)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEE-------CC---SSSHHHHHHHHTTC--C
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEe-------CC---cCCHHHHHHHHhhC--C
Confidence            4566778999999987  589998854  455554    45556777 653       10   11667777777665  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||++++.+.+..++.+++..| +|+|++-.
T Consensus       238 iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~  268 (379)
T 2rdx_A          238 QPMKLDECVTGLHMAQRIVADRGAEICCLKI  268 (379)
T ss_dssp             SCEEECTTCCSHHHHHHHHHHTCCSEEEEET
T ss_pred             CCEEEeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence            9999999999999999999987 89999844

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=95.83  E-value=0.034  Score=48.42  Aligned_cols=93  Identities=11%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      ++++..+.++.+|+.+  ++|+.+...  .+.++    ++.+.+.|++.|.=-        ..+.+++.+.++++.+  +
T Consensus       189 ~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~  258 (393)
T 2og9_A          189 DGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIEEP--------LDAYDHEGHAALALQF--D  258 (393)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEECC--------SCTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEECC--------CCcccHHHHHHHHHhC--C
Confidence            4566778999999986  689998753  45544    455667788877410        0123567778887777  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +||++++.+.+..++.+++..| +|+|++--.
T Consensus       259 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~  290 (393)
T 2og9_A          259 TPIATGEMLTSAAEHGDLIRHRAADYLMPDAP  290 (393)
T ss_dssp             SCEEECTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred             CCEEeCCCcCCHHHHHHHHHCCCCCEEeeCcc
Confidence            9999999999999999999987 899988543

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=95.77  E-value=0.044  Score=47.34  Aligned_cols=93  Identities=9%  Similarity=0.087  Sum_probs=70.7

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++|+.+...  .+.++    ++.+.+.|++.+.=-        ..+.+++.+.++++.+  +
T Consensus       182 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~  251 (382)
T 1rvk_A          182 DVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIEEP--------MDEQSLSSYKWLSDNL--D  251 (382)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEECC--------SCTTCHHHHHHHHHHC--S
T ss_pred             chHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEeCC--------CChhhHHHHHHHHhhC--C
Confidence            4566778999999987  688998854  45544    466777888877420        0123567778887776  7


Q ss_pred             cEEEEecCCCC-HHHHHHHHHhC-CCEEEEcHH
Q psy16780        120 VDVYLDGGVRY-GTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       120 ipiia~GGI~~-~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +||++++.+.+ ..++.+++..| +|+|++--.
T Consensus       252 iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~  284 (382)
T 1rvk_A          252 IPVVGPESAAGKHWHRAEWIKAGACDILRTGVN  284 (382)
T ss_dssp             SCEEECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred             CCEEEeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence            99999999999 99999999987 899998654

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=95.74  E-value=0.07  Score=46.48  Aligned_cols=93  Identities=6%  Similarity=-0.027  Sum_probs=70.7

Q ss_pred             Cc-cccHHHHHHHHHhc--CCCEEEEec--c--CHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH-H
Q psy16780         48 DE-TINWSDVTWLKTIT--KLPIVLKGI--L--TAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK-A  115 (202)
Q Consensus        48 d~-~~~~~~i~~i~~~~--~~Pv~vK~~--~--~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~-~  115 (202)
                      ++ +...+.++.+|+.+  ++|+.++..  .  +.++    ++.+.+.|++.|.=-      .  .+.+++.+.++++ .
T Consensus       174 ~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~iEqP------~--~~~d~~~~~~l~~~~  245 (401)
T 2hzg_A          174 GTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLEEP------F--DAGALAAHAALAGRG  245 (401)
T ss_dssp             SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEEECC------S--CTTCHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEECC------C--CccCHHHHHHHHhhC
Confidence            44 56678999999987  689998854  5  7665    466778898887410      0  1235667777766 5


Q ss_pred             hCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        116 VGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       116 ~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +  ++||++++.+.+..++.+++..| +|+|++-..
T Consensus       246 ~--~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~  279 (401)
T 2hzg_A          246 A--RVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCG  279 (401)
T ss_dssp             C--SSEEEECTTCSSHHHHHHHHHHSCCSEEEECHH
T ss_pred             C--CCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcc
Confidence            5  79999999999999999999986 899999654

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=95.73  E-value=0.036  Score=48.22  Aligned_cols=90  Identities=16%  Similarity=0.078  Sum_probs=69.3

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      +++..+.++++|+.+  ++|+.++..  .+.++    ++.+.+.|++.|.--      .  .+.+++.+.++++.+  ++
T Consensus       177 ~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP------~--~~~d~~~~~~l~~~~--~i  246 (391)
T 2qgy_A          177 LSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIEEP------V--DGENISLLTEIKNTF--NM  246 (391)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEECS------S--CTTCHHHHHHHHHHC--SS
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEeCC------C--ChhhHHHHHHHHhhC--CC
Confidence            466778999999987  689999854  45544    456677888877520      0  123567778887777  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      ||++++.+.+..++.+++..| +|+|++-
T Consensus       247 PIa~dE~~~~~~~~~~~i~~~~~d~v~ik  275 (391)
T 2qgy_A          247 KVVTGEKQSGLVHFRELISRNAADIFNPD  275 (391)
T ss_dssp             CEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred             CEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence            999999999999999999987 8999884

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=95.70  E-value=0.013  Score=46.58  Aligned_cols=46  Identities=24%  Similarity=0.297  Sum_probs=40.0

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH   94 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~   94 (202)
                      |-..-++|+++++.+++|+++++- .+.++++.++++||++|..++.
T Consensus       135 PGi~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~  181 (192)
T 3kts_A          135 PGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK  181 (192)
T ss_dssp             CTTCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCG
T ss_pred             CchhHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCH
Confidence            444567999999999999999974 7899999999999999998764

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=95.68  E-value=0.042  Score=44.96  Aligned_cols=78  Identities=18%  Similarity=0.343  Sum_probs=47.3

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH-H---------HHHHHHhCCCEEEE
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT-D---------VFKALALGAKMVFV  147 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~-D---------~~kal~~GAd~V~i  147 (202)
                      ++.+.++|+++++.+.+          .   ...+++.++++. ++.+.||+-.. +         ..+++.+|||.+.+
T Consensus       150 A~~a~~~g~~GvV~s~~----------e---~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVv  215 (239)
T 3tr2_A          150 ATLAKSAGLDGVVCSAQ----------E---AALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVI  215 (239)
T ss_dssp             HHHHHHHTCCEEECCHH----------H---HHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCCEEEECch----------h---HHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEE
Confidence            44556779999987542          1   133444443333 77889998532 2         56788899999999


Q ss_pred             cHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        148 GRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       148 g~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      ||+++.+   ..+   .+.++.++++++
T Consensus       216 Gr~I~~a---~dp---~~a~~~i~~~i~  237 (239)
T 3tr2_A          216 GRPITQS---TDP---LKALEAIDKDIK  237 (239)
T ss_dssp             CHHHHTS---SSH---HHHHHHHHHHC-
T ss_pred             ChHHhCC---CCH---HHHHHHHHHHHh
Confidence            9998752   222   244455555543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.64  E-value=0.033  Score=49.91  Aligned_cols=68  Identities=25%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.|.++...|.    ....++.+..+++.++ ++||++ |++.+.+++.++..+|||++.++
T Consensus       239 ~~~a~~l~~aGvd~v~i~~~~G~----~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~  306 (494)
T 1vrd_A          239 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG  306 (494)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHhCCCEEEEEecCCc----hHHHHHHHHHHHHHCC-CceEEe-CCcCCHHHHHHHHHcCCCEEEEc
Confidence            57788999999999999654331    1225667788877763 588887 77899999999999999999984

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=95.59  E-value=0.053  Score=44.85  Aligned_cols=77  Identities=19%  Similarity=0.376  Sum_probs=49.6

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC-HHH---------HHHHHHhCCCEEEE
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY-GTD---------VFKALALGAKMVFV  147 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D---------~~kal~~GAd~V~i  147 (202)
                      ++.+.++|+++++++.             .-+..+++.++++. ++.+.||+- +.+         ..+++.+|||.+.+
T Consensus       168 A~~a~~aG~~GvV~sa-------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVv  233 (255)
T 3ldv_A          168 ATLTKNAGLDGVVCSA-------------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVI  233 (255)
T ss_dssp             HHHHHHTTCSEEECCH-------------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEE
T ss_pred             HHHHHHcCCCEEEECH-------------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEE
Confidence            4455678999998743             12345555565444 667788874 223         56788899999999


Q ss_pred             cHHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        148 GRPALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       148 g~~~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                      ||+++.+   ..+   .+.++.+++++
T Consensus       234 Gr~I~~a---~dp---~~a~~~i~~ei  254 (255)
T 3ldv_A          234 GRPITQA---AHP---EVVLEEINSSL  254 (255)
T ss_dssp             CHHHHTC---SCH---HHHHHHHHHHC
T ss_pred             CHHHhCC---CCH---HHHHHHHHHhh
Confidence            9998852   222   34445565553

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=95.56  E-value=0.054  Score=45.78  Aligned_cols=84  Identities=17%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             HHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC--CCCCc---cchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780         59 LKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR--QLDYV---PASIEALPEIAKAVGHKVDVYLDGGVRYGTD  133 (202)
Q Consensus        59 i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~--~~~~~---~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D  133 (202)
                      +.+..+.-|+ ..+.+++.|+...++||+.|.+-...-+  ...++   ..+.+.+.++++.+  .+||++-+++.+..+
T Consensus        16 ~~~~~kggv~-~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v--~iPvl~k~~i~~ide   92 (297)
T 4adt_A           16 WCEMLKGGVI-MDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI--SINVLAKVRIGHFVE   92 (297)
T ss_dssp             HHHTTTTCEE-EEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC--CSEEEEEEETTCHHH
T ss_pred             HHHHhcCCcc-cCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc--CCCEEEeccCCcHHH
Confidence            3333444444 4667889999999999999987521111  11111   23677888888877  899999888888888


Q ss_pred             HHHHHHhCCCEE
Q psy16780        134 VFKALALGAKMV  145 (202)
Q Consensus       134 ~~kal~~GAd~V  145 (202)
                      +..+.++|||+|
T Consensus        93 ~qil~aaGAD~I  104 (297)
T 4adt_A           93 AQILEELKVDML  104 (297)
T ss_dssp             HHHHHHTTCSEE
T ss_pred             HHHHHHcCCCEE
Confidence            877788999999

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=95.46  E-value=0.11  Score=45.10  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=   +     ..+.+++.+.++++..  .
T Consensus       176 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--~  245 (383)
T 3i4k_A          176 DPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFEQ---P-----TPADDLETLREITRRT--N  245 (383)
T ss_dssp             CHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEES---C-----SCTTCHHHHHHHHHHH--C
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC---C-----CChhhHHHHHHHHhhC--C
Confidence            5556677899999987  578888754  45544    46677888888751   0     0122466778887777  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||++++.+.+..|+.+++..| +|.|++--
T Consensus       246 iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~  276 (383)
T 3i4k_A          246 VSVMADESVWTPAEALAVVKAQAADVIALKT  276 (383)
T ss_dssp             CEEEESTTCSSHHHHHHHHHHTCCSEEEECT
T ss_pred             CCEEecCccCCHHHHHHHHHcCCCCEEEEcc
Confidence            9999999999999999999987 89999864

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=95.44  E-value=0.35  Score=40.93  Aligned_cols=113  Identities=19%  Similarity=0.138  Sum_probs=77.8

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCC--C-ccchHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEc
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLD--Y-VPASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVG  148 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~-~~~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig  148 (202)
                      .+|++++...+.|+|.+-++-+.-...+  + ..-+++.|.++.+.+..++|++.-||=.. .+++.+++..|..=|-++
T Consensus       172 T~Peea~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~  251 (306)
T 3pm6_A          172 TTPEESEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFTKEIFEKCIERGVAKVNVN  251 (306)
T ss_dssp             CCHHHHHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCCHHHHHHHHHTTEEEEEES
T ss_pred             CCHHHHHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence            4689999988999998887642111111  1 22367789999888865799999987654 566889999999999999


Q ss_pred             HHHHHHh----hh----cCh-HHHHHHHHHHHHHHHHHHHHhCCCC
Q psy16780        149 RPALWGL----AH----SGK-SGVRKVLDILINEFDQALALSGCTS  185 (202)
Q Consensus       149 ~~~l~~~----~~----~G~-~~v~~~i~~l~~~L~~~m~~~G~~~  185 (202)
                      +-+-.+.    ..    ..+ .-+....+.+++.++..|..+|+..
T Consensus       252 Tdl~~a~~~~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs~g  297 (306)
T 3pm6_A          252 RAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDSTG  297 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9654321    11    111 1233445667788888899988754

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=95.40  E-value=0.083  Score=44.88  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=63.8

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc-C---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL-T---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~-~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      +++...+.++++++.++.|+.|.+.. +   .+.++.+.+.|+|.|.++.  +      .| ...+..+++ .  .++++
T Consensus        61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~--g------~p-~~~~~~l~~-~--g~~v~  128 (326)
T 3bo9_A           61 KPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGA--G------NP-TKYIRELKE-N--GTKVI  128 (326)
T ss_dssp             CHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEES--S------CC-HHHHHHHHH-T--TCEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECC--C------Cc-HHHHHHHHH-c--CCcEE
Confidence            55556678888888888899988653 2   4667888999999999843  2      12 334455443 2  57777


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      .  ++.+.+++.++...|||++.+
T Consensus       129 ~--~v~s~~~a~~a~~~GaD~i~v  150 (326)
T 3bo9_A          129 P--VVASDSLARMVERAGADAVIA  150 (326)
T ss_dssp             E--EESSHHHHHHHHHTTCSCEEE
T ss_pred             E--EcCCHHHHHHHHHcCCCEEEE
Confidence            6  578999999999999999988

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=95.40  E-value=0.09  Score=45.13  Aligned_cols=93  Identities=9%  Similarity=0.010  Sum_probs=69.0

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=       . ..+.+++.+.++++.+  +
T Consensus       170 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~  239 (370)
T 1nu5_A          170 TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQ-------P-VPRANFGALRRLTEQN--G  239 (370)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEEC-------C-SCTTCHHHHHHHHHHC--S
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEeC-------C-CCcccHHHHHHHHHhC--C
Confidence            3455677899999876  578888753  45444    46677888887641       0 1123567778887776  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +||++++.+.+..|+.+++..| +|.|++--.
T Consensus       240 ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~  271 (370)
T 1nu5_A          240 VAILADESLSSLSSAFELARDHAVDAFSLKLC  271 (370)
T ss_dssp             SEEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred             CCEEeCCCCCCHHHHHHHHHhCCCCEEEEchh
Confidence            9999999999999999999987 899999653

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=95.36  E-value=0.05  Score=47.55  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=50.4

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|+|.+....|.    ....++.+..+++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus       155 ~~~a~~~~~~G~d~i~i~~~~g~----~~~~~e~i~~ir~~~~-~~pviv-~~v~~~~~a~~a~~~Gad~I~vg  222 (404)
T 1eep_A          155 IERVEELVKAHVDILVIDSAHGH----STRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG  222 (404)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCC----hHHHHHHHHHHHHHCC-CCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence            56678889999999998432221    1224556677777653 689987 67889999999999999999983

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=95.34  E-value=0.55  Score=39.42  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=73.9

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEc
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVG  148 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig  148 (202)
                      .+|++++... +.|+|.+-++-+.-...+.+.  -+++.|.++++.+  .+|++.-||=.. .+++.+++..|..=|-++
T Consensus       159 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~  236 (288)
T 3q94_A          159 ADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVN  236 (288)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHH--CSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred             CCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhc--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEEC
Confidence            4688988876 699999988642111122222  3677899999888  699999887544 466889999999999999


Q ss_pred             HHHHHHhh-------hc-----Ch-HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWGLA-------HS-----GK-SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~~~-------~~-----G~-~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      +-+-.+..       ..     .+ .-+....+.+++.++..|..+|+.
T Consensus       237 Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~  285 (288)
T 3q94_A          237 TENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN  285 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            96543211       01     11 223344456777777788877764

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=95.29  E-value=0.072  Score=44.95  Aligned_cols=68  Identities=18%  Similarity=0.095  Sum_probs=49.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC--CC-HHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV--RY-GTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI--~~-~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.++.+.++|||.|.+-+         .++.+.+.++.+.+  ++|++++.-.  .+ .....+.-++|.+.|.++...+
T Consensus       171 ~ra~ay~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~  239 (295)
T 1xg4_A          171 ERAQAYVEAGAEMLFPEA---------ITELAMYRQFADAV--QVPILANITEFGATPLFTTDELRSAHVAMALYPLSAF  239 (295)
T ss_dssp             HHHHHHHHTTCSEEEETT---------CCSHHHHHHHHHHH--CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHH
T ss_pred             HHHHHHHHcCCCEEEEeC---------CCCHHHHHHHHHHc--CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHH
Confidence            456788999999999843         34677788888888  7999875432  22 2334455568999999999887


Q ss_pred             HH
Q psy16780        153 WG  154 (202)
Q Consensus       153 ~~  154 (202)
                      ++
T Consensus       240 ~a  241 (295)
T 1xg4_A          240 RA  241 (295)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=95.27  E-value=0.052  Score=47.28  Aligned_cols=92  Identities=11%  Similarity=0.061  Sum_probs=69.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHH-HHhCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA-KAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~-~~~~~  118 (202)
                      +++...+.++++|+.+  ++|+.+...  .+.++    ++.+.+.|++.|.=-      .  .+.+++.+.+++ +.+  
T Consensus       177 ~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEqP------~--~~~d~~~~~~l~~~~~--  246 (389)
T 3ozy_A          177 APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFEEP------L--SIDDIEGHRILRAQGT--  246 (389)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEESC------S--CTTCHHHHHHHHTTCC--
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEECC------C--CcccHHHHHHHHhcCC--
Confidence            5566778899999987  688988854  45544    466778898888510      0  122566677776 655  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++||++++.+.+..|+.+++..| +|.|++--
T Consensus       247 ~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~  278 (389)
T 3ozy_A          247 PVRIATGENLYTRNAFNDYIRNDAIDVLQADA  278 (389)
T ss_dssp             SSEEEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred             CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence            79999999999999999999986 89998854

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=95.22  E-value=0.23  Score=41.69  Aligned_cols=103  Identities=14%  Similarity=0.223  Sum_probs=68.3

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEec-------cC-------HHHHHHHHHcCCcEEEeec--cCcC-----------
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGI-------LT-------AEDAKIGVEMGASAIMVSN--HGGR-----------   97 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-------~~-------~~~a~~l~~aG~d~I~v~~--~gg~-----------   97 (202)
                      .+|-...+...++.+++.+++||.+=++       .+       .++++.+.++|+|+|+++-  ..|+           
T Consensus        70 ~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~  149 (287)
T 3iwp_A           70 SEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMA  149 (287)
T ss_dssp             GGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHH
Confidence            3555556778999999988999877443       12       2568889999999999973  1111           


Q ss_pred             -----------CC-----------------------CCcc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH
Q psy16780         98 -----------QL-----------------------DYVP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA  139 (202)
Q Consensus        98 -----------~~-----------------------~~~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~  139 (202)
                                 .+                       .++.    ..++.|+++.+..+++++|++.|||+. +.+.+.++
T Consensus       150 ~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~-~Ni~~l~~  228 (287)
T 3iwp_A          150 ICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITD-RNLQRILE  228 (287)
T ss_dssp             HHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTTSSSTTTTHHHHHHHHHHHTTSSEEEECTTCCT-TTHHHHHH
T ss_pred             HcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCCChHHhHHHHHHHHHHhCCCCEEEECCCcCH-HHHHHHHH
Confidence                       00                       1111    234456666666666899999999864 55666665


Q ss_pred             -hCCCEEEEc
Q psy16780        140 -LGAKMVFVG  148 (202)
Q Consensus       140 -~GAd~V~ig  148 (202)
                       +|++.+=..
T Consensus       229 ~tG~~~~H~S  238 (287)
T 3iwp_A          229 GSGATEFHCS  238 (287)
T ss_dssp             HHCCSEEEEC
T ss_pred             hhCCCEEeEC
Confidence             898877554

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=95.20  E-value=0.33  Score=37.82  Aligned_cols=87  Identities=24%  Similarity=0.182  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhc-CCCEEE--EeccC-HHH-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE-EEec
Q psy16780         53 WSDVTWLKTIT-KLPIVL--KGILT-AED-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV-YLDG  126 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~v--K~~~~-~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi-ia~G  126 (202)
                      .+.++++++.+ +.|+++  |. .+ ++. ++.+.++|+|+|+++...+      ......+.+..+..  ..++ +..-
T Consensus        41 ~~~i~~l~~~~~~~~i~~~l~~-~di~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~~--g~~~gv~~~  111 (207)
T 3ajx_A           41 LSVITAVKKAHPDKIVFADMKT-MDAGELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQAH--NKGVVVDLI  111 (207)
T ss_dssp             THHHHHHHHHSTTSEEEEEEEE-CSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHH--TCEEEEECT
T ss_pred             HHHHHHHHHhCCCCeEEEEEEe-cCccHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHHc--CCceEEEEe
Confidence            45899999887 789886  74 45 655 8999999999999865322      11222222222222  3444 2122


Q ss_pred             CCCCHHHHH-HHHHhCCCEEEEc
Q psy16780        127 GVRYGTDVF-KALALGAKMVFVG  148 (202)
Q Consensus       127 GI~~~~D~~-kal~~GAd~V~ig  148 (202)
                      ...++.+.. .+...|+|.|.+.
T Consensus       112 s~~~p~~~~~~~~~~g~d~v~~~  134 (207)
T 3ajx_A          112 GIEDKATRAQEVRALGAKFVEMH  134 (207)
T ss_dssp             TCSSHHHHHHHHHHTTCSEEEEE
T ss_pred             cCCChHHHHHHHHHhCCCEEEEE
Confidence            334667644 4445799998554

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=95.12  E-value=0.43  Score=37.20  Aligned_cols=89  Identities=17%  Similarity=0.082  Sum_probs=57.1

Q ss_pred             cHHHHHHHHHh-cCCCEEEEe--ccCHHH-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe-c
Q psy16780         52 NWSDVTWLKTI-TKLPIVLKG--ILTAED-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD-G  126 (202)
Q Consensus        52 ~~~~i~~i~~~-~~~Pv~vK~--~~~~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~-G  126 (202)
                      ..+.++++|+. .+.||.+-.  ....+. ++.+.++|+|+|++....+      ...+..+.+..+..  .++++.+ -
T Consensus        40 g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~------~~~~~~~~~~~~~~--g~~~~v~~~  111 (211)
T 3f4w_A           40 GVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD------VLTIQSCIRAAKEA--GKQVVVDMI  111 (211)
T ss_dssp             TTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHH--TCEEEEECT
T ss_pred             cHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC------hhHHHHHHHHHHHc--CCeEEEEec
Confidence            35789999988 488987533  334555 8999999999999954321      12223222222333  4566543 4


Q ss_pred             CCCCH-HHHHHHHHhCCCEEEEc
Q psy16780        127 GVRYG-TDVFKALALGAKMVFVG  148 (202)
Q Consensus       127 GI~~~-~D~~kal~~GAd~V~ig  148 (202)
                      +..++ +.+.++..+|+|.|.+.
T Consensus       112 ~~~t~~~~~~~~~~~g~d~i~v~  134 (211)
T 3f4w_A          112 CVDDLPARVRLLEEAGADMLAVH  134 (211)
T ss_dssp             TCSSHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEc
Confidence            45666 44677778999998875

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=95.12  E-value=0.046  Score=47.01  Aligned_cols=93  Identities=11%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHHH-----HHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDAK-----IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a~-----~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +++...+.++.+|+.+  ++|+.+...  .+.+++.     .+.+.|++.+.=       . ..+.+++.+.++++.+  
T Consensus       167 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--  236 (369)
T 2p8b_A          167 NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIEQ-------P-VIADDIDAMAHIRSKT--  236 (369)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEEC-------C-BCTTCHHHHHHHHHTC--
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEC-------C-CCcccHHHHHHHHHhC--
Confidence            4566678999999987  688888753  3444443     344566665531       0 1123567778887766  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      ++||++++.+.+..++.+++..| +|+|++-..
T Consensus       237 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~  269 (369)
T 2p8b_A          237 DLPLMIDEGLKSSREMRQIIKLEAADKVNIKLM  269 (369)
T ss_dssp             CSCEEESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             CCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecc
Confidence            79999999999999999999986 899999654

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=95.09  E-value=0.098  Score=45.64  Aligned_cols=92  Identities=12%  Similarity=0.070  Sum_probs=70.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=      ..  .+.+++.+.++++..  .
T Consensus       173 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq------P~--~~~d~~~~~~l~~~~--~  242 (393)
T 4dwd_A          173 DIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFEE------PV--QHYHVGAMGEVAQRL--D  242 (393)
T ss_dssp             CHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEEC------CS--CTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC------CC--CcccHHHHHHHHhhC--C
Confidence            4566778899999986  689998854  45544    46677888888752      00  122566778887776  8


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +||+++..+.+..|+.+++..|+|.|++--
T Consensus       243 iPIa~dE~~~~~~~~~~~i~~~~d~v~~k~  272 (393)
T 4dwd_A          243 ITVSAGEQTYTLQALKDLILSGVRMVQPDI  272 (393)
T ss_dssp             SEEEBCTTCCSHHHHHHHHHHTCCEECCCT
T ss_pred             CCEEecCCcCCHHHHHHHHHcCCCEEEeCc
Confidence            999999999999999999998899998843

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=95.06  E-value=0.33  Score=40.63  Aligned_cols=90  Identities=22%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc---CcCCCCC--ccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH---GGRQLDY--VPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~---gg~~~~~--~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      ++.+.+.+.+..+.++++ .....+.++.+.++|+|+|.+-+.   -.+...+  .....+.+.++++.+  ++|+++  
T Consensus         9 ~~~~~~~~~~~~~~g~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~--~iPv~~--   83 (305)
T 2nv1_A            9 TERVKRGMAEMQKGGVIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAV--SIPVMA--   83 (305)
T ss_dssp             CHHHHHHHHHTTTTCEEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHC--SSCEEE--
T ss_pred             cHHHHHHHHHHccCCeee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhC--CCCEEe--
Confidence            345555566667778887 556789999999999999943220   0000011  123566777887766  799985  


Q ss_pred             CCCC--HHHHHHHHHhCCCEEE
Q psy16780        127 GVRY--GTDVFKALALGAKMVF  146 (202)
Q Consensus       127 GI~~--~~D~~kal~~GAd~V~  146 (202)
                      +++.  .+++..++++|||+|.
T Consensus        84 k~r~g~~~~~~~~~a~GAd~V~  105 (305)
T 2nv1_A           84 KARIGHIVEARVLEAMGVDYID  105 (305)
T ss_dssp             EECTTCHHHHHHHHHHTCSEEE
T ss_pred             cccccchHHHHHHHHCCCCEEE
Confidence            4444  6777777889999996

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=95.01  E-value=0.19  Score=40.75  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=59.4

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-c-----C-HHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-L-----T-AEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~-----~-~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      +.+.++.+++.+++|++ |-. .     . .+++    ..+....+|++.++..||+..   .-+|+.+..+..    +.
T Consensus       103 ~~~~~~~l~~~~~~~vi-Ka~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~---~fDW~~~~~~~~----~~  174 (228)
T 4aaj_A          103 LPQTIDTLKKEFGVFVM-KAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGK---LHDLRVSSLVAR----KI  174 (228)
T ss_dssp             CHHHHHHHHHHHCCEEE-EEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC----------CCCHHHHHHHH----HS
T ss_pred             CHHHHHHHhhccCceEE-EEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcC---cCChHHHHHhhh----cC
Confidence            45688889888888887 432 1     1 2222    334556799999987666531   224555555432    57


Q ss_pred             EEEEecCCCCHHHHHHHHH-hCCCEEEEcHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALA-LGAKMVFVGRPA  151 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~-~GAd~V~ig~~~  151 (202)
                      |++.+||+ +++.+.+|+. .+..+|=+.|.+
T Consensus       175 p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGV  205 (228)
T 4aaj_A          175 PVIVAGGL-NAENVEEVIKVVKPYGVDVSSGV  205 (228)
T ss_dssp             CEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred             CeEEECCC-CHHHHHHHHHHhCCCEEEeCCCC
Confidence            99999998 6788989887 699999998855

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=95.01  E-value=0.31  Score=49.24  Aligned_cols=119  Identities=9%  Similarity=0.055  Sum_probs=82.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh-----CCCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV-----GHKVDVYL-DGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.|..+++.|+..+++|-++-..-....|.+-++..+.+++     +.++-++. +|-+|+.-+++-.+-.||++|-=--
T Consensus       591 ~~a~~av~~g~~iliLsDr~~~~~~~~ip~lla~~avh~~L~~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av~Pyl  670 (1479)
T 1ea0_A          591 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYL  670 (1479)
T ss_dssp             HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHH
T ss_pred             HHHHHHHHCCCcEEEECCCCCCCCccCcCHHHHHHHHHHHHHhcCccccceEEEEeCCchhHHHHHHHHhcCccccCHHH
Confidence            45677888999999998753211011123444455554443     34577777 7889999999999999999997322


Q ss_pred             HH--HHHhhhcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780        150 PA--LWGLAHSG-------KSGVRKVLDILINEFDQALALSGCTSVGEIQREMV  194 (202)
Q Consensus       150 ~~--l~~~~~~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~  194 (202)
                      +|  +..+...|       .+.+.++++.+.++|...|..+|.++++.-++..+
T Consensus       671 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqi  724 (1479)
T 1ea0_A          671 AQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGN  724 (1479)
T ss_dssp             HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCC
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCcee
Confidence            22  11222223       35789999999999999999999999998877643

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=94.98  E-value=0.084  Score=44.39  Aligned_cols=72  Identities=22%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe-----cCCCCH--------HHHHHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD-----GGVRYG--------TDVFKALA  139 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~-----GGI~~~--------~D~~kal~  139 (202)
                      .+.+.+..+.++|||.|.+...-  ...+..|+...+..+++.+  ++||...     |++...        +|+..+.+
T Consensus        47 ~s~~~a~~A~~gGAdRIELc~~l--~~GGlTPS~g~i~~a~~~~--~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~  122 (287)
T 3iwp_A           47 DSVESAVNAERGGADRIELCSGL--SEGGTTPSMGVLQVVKQSV--QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKL  122 (287)
T ss_dssp             SSHHHHHHHHHHTCSEEEECBCG--GGTCBCCCHHHHHHHHTTC--CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCEEEECCCC--CCCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHH
Confidence            78999999999999999997531  1112245666777776655  6888874     333333        68989999


Q ss_pred             hCCCEEEEc
Q psy16780        140 LGAKMVFVG  148 (202)
Q Consensus       140 ~GAd~V~ig  148 (202)
                      +|||+|.+|
T Consensus       123 ~GAdGvVfG  131 (287)
T 3iwp_A          123 YGADGLVFG  131 (287)
T ss_dssp             TTCSEEEEC
T ss_pred             cCCCEEEEe
Confidence            999999999

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=94.96  E-value=0.63  Score=38.99  Aligned_cols=110  Identities=19%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEc
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVG  148 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig  148 (202)
                      .+|++++... +.|+|.+-++-+.-...+.+.|  +++.|.++++.+  ++|++.-||=.. .+++.+++..|..=|-++
T Consensus       155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~  232 (286)
T 1gvf_A          155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVA  232 (286)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred             CCHHHHHHHHHHHCCCEEEeecCccccCcCCCCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHCCCeEEEEC
Confidence            4588888776 7999999886432112222333  667899998887  799999886544 566889999999999999


Q ss_pred             HHHHHHh----h---hcC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWGL----A---HSG-----K-SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~~----~---~~G-----~-~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      |-+-.+.    .   ...     + .-+....+.+++.++..|..+|+.
T Consensus       233 Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~  281 (286)
T 1gvf_A          233 TELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA  281 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hHHHHHHHHHHHHHHHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9654331    1   111     1 113334456777788888888764

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=94.95  E-value=0.14  Score=43.82  Aligned_cols=93  Identities=12%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHH--cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVE--MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~--aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.++    ++.+.+  .|++.|.       +. ..+.+++.+.++++.+ 
T Consensus       167 ~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~-  237 (366)
T 1tkk_A          167 DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVE-------QP-VHKDDLAGLKKVTDAT-  237 (366)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEE-------CC-SCTTCHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEE-------CC-CCcccHHHHHHHHhhC-
Confidence            5566778999999987  688888753  45544    456677  7777664       10 1123667778887776 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                       ++||++++.+.+..|+.+++..| +|.|++--.
T Consensus       238 -~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~  270 (366)
T 1tkk_A          238 -DTPIMADESVFTPRQAFEVLQTRSADLINIKLM  270 (366)
T ss_dssp             -SSCEEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             -CCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehh
Confidence             79999999999999999999986 899998653

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=94.93  E-value=0.087  Score=45.89  Aligned_cols=92  Identities=10%  Similarity=0.037  Sum_probs=68.7

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=-        ..+.+++.+.++++.+  +
T Consensus       202 ~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~  271 (398)
T 2pp0_A          202 NCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEEP--------LDAYDIEGHAQLAAAL--D  271 (398)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEECC--------SCTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceeeCC--------CChhhHHHHHHHHhhC--C
Confidence            4555678999999986  689988754  45544    455667787766410        0123567778887777  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||++++.+.+..++.+++..| +|+|++--
T Consensus       272 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~  302 (398)
T 2pp0_A          272 TPIATGEMLTSFREHEQLILGNASDFVQPDA  302 (398)
T ss_dssp             SCEEECTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred             CCEEecCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence            9999999999999999999987 89998854

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*

Probab=94.91  E-value=0.059  Score=47.27  Aligned_cols=86  Identities=8%  Similarity=-0.038  Sum_probs=66.7

Q ss_pred             cHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ..+.++++|+.+  ++|+.+...  .+.++    ++.+.+.|++.|..-          ..+++.+.++++.+  .+||+
T Consensus       199 ~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P----------~~d~~~~~~l~~~~--~iPIa  266 (409)
T 3go2_A          199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEID----------SYSPQGLAYVRNHS--PHPIS  266 (409)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEECC----------CSCHHHHHHHHHTC--SSCEE
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEeC----------cCCHHHHHHHHhhC--CCCEE
Confidence            467899999986  688998754  45555    455667888888741          13566778887766  79999


Q ss_pred             EecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        124 LDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +++.+.+..++.+++..| +|.|++--
T Consensus       267 ~dE~~~~~~~~~~~i~~~~~d~v~~k~  293 (409)
T 3go2_A          267 SCETLFGIREFKPFFDANAVDVAIVDT  293 (409)
T ss_dssp             ECTTCCHHHHHHHHHHTTCCSEEEECH
T ss_pred             eCCCcCCHHHHHHHHHhCCCCEEEeCC
Confidence            999999999999999987 79998854

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=94.84  E-value=0.2  Score=42.43  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEecc-C---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGIL-T---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~-~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      +++...+.++++++.++.|+.+.... +   .+.++.+.++|+|+|.++.  |.     +  .+.+..+++ .  .+||+
T Consensus        47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~--g~-----p--~~~i~~l~~-~--g~~v~  114 (332)
T 2z6i_A           47 PKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGA--GN-----P--SKYMERFHE-A--GIIVI  114 (332)
T ss_dssp             CHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECS--SC-----G--GGTHHHHHH-T--TCEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECC--CC-----h--HHHHHHHHH-c--CCeEE
Confidence            55555667888888888899888653 3   3567889999999999854  21     1  234455543 2  58888


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      ..  +.+.+++.++...|+|++.+
T Consensus       115 ~~--v~~~~~a~~~~~~GaD~i~v  136 (332)
T 2z6i_A          115 PV--VPSVALAKRMEKIGADAVIA  136 (332)
T ss_dssp             EE--ESSHHHHHHHHHTTCSCEEE
T ss_pred             EE--eCCHHHHHHHHHcCCCEEEE
Confidence            64  68899998888999999988

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=94.82  E-value=0.14  Score=42.23  Aligned_cols=73  Identities=21%  Similarity=0.221  Sum_probs=53.4

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE-----ecCCCCH--------HHHHHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL-----DGGVRYG--------TDVFKALA  139 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia-----~GGI~~~--------~D~~kal~  139 (202)
                      .+.+++..+.+.|||.|.+...-  ...+..|+...+..+++.+  ++||.+     .|++...        +|+..+..
T Consensus         9 ~s~~~a~~A~~~GAdRIELc~~L--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~   84 (256)
T 1twd_A            9 YSMECALTAQQNGADRVELCAAP--KEGGLTPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRE   84 (256)
T ss_dssp             SSHHHHHHHHHTTCSEEEECBCG--GGTCBCCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEcCCc--ccCCCCCCHHHHHHHHHHc--CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999997631  1112246677777777776  788887     4555433        36666777


Q ss_pred             hCCCEEEEcH
Q psy16780        140 LGAKMVFVGR  149 (202)
Q Consensus       140 ~GAd~V~ig~  149 (202)
                      +|||+|.+|-
T Consensus        85 ~GadGvV~G~   94 (256)
T 1twd_A           85 LGFPGLVTGV   94 (256)
T ss_dssp             TTCSEEEECC
T ss_pred             cCCCEEEEee
Confidence            9999999995

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A

Probab=94.82  E-value=0.19  Score=44.04  Aligned_cols=94  Identities=22%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccC----HHHHHHHHHc--CCcEEEeeccCcCCCCCccchHHHHHHHHHHh---C-CCc
Q psy16780         53 WSDVTWLKTITK--LPIVLKGILT----AEDAKIGVEM--GASAIMVSNHGGRQLDYVPASIEALPEIAKAV---G-HKV  120 (202)
Q Consensus        53 ~~~i~~i~~~~~--~Pv~vK~~~~----~~~a~~l~~a--G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i  120 (202)
                      .+.++..++.++  .|+++ ++-|    .+.+-.+.+.  |+|+|.+++...+.   + ...+...++++.+   + +++
T Consensus       197 ~~A~~~~~~~~p~~~~~~v-lvDT~d~~~~~al~~a~~l~~~d~IrlDs~~~~~---g-d~~~~v~~v~~~ld~~G~~~~  271 (398)
T 2i1o_A          197 EEAWKLTLENTKNGQKSVL-LIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRR---G-NFEALIREVRWELALRGRSDI  271 (398)
T ss_dssp             HHHHHHHHHTCCTTSCCEE-ECCSSSCHHHHHHHHHTTCSCCCEEEECCCGGGC---S-CHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHhCCCCCCEEE-EEcCchHHHHHHHHHHHhhcCCcEEEeCCCCCCc---c-cHHHHHHHHHHHHHhCCCCce
Confidence            567777777764  45554 5533    3334333344  99999998742110   0 1222334443322   1 368


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .|++|||| +.+.+.+..+.|+|.+++|+.+.
T Consensus       272 ~I~aSggl-~~~~i~~l~~~GvD~~gvGt~l~  302 (398)
T 2i1o_A          272 KIMVSGGL-DENTVKKLREAGAEAFGVGTSIS  302 (398)
T ss_dssp             EEEEESSC-CHHHHHHHHHTTCCEEEECHHHH
T ss_pred             EEEEeCCC-CHHHHHHHHHcCCCEEEeCcccC
Confidence            99999998 68888888889999999999776

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=94.77  E-value=0.084  Score=43.05  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=34.0

Q ss_pred             HHHHHHHhCCCcEEEEecCCCCHH----------HHHHHHHhCCCEEEEcHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYGT----------DVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~~----------D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +.++++..+ +.+++.+|||+...          .+.+++.+|||.+.+||+++.
T Consensus       173 i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~  226 (245)
T 1eix_A          173 AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQ  226 (245)
T ss_dssp             HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred             HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcC
Confidence            566666554 46899999998531          467788899999999999884

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=94.77  E-value=0.091  Score=45.27  Aligned_cols=77  Identities=18%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             CEEEEeccCH---HHHHHHHHc--CCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         66 PIVLKGILTA---EDAKIGVEM--GASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        66 Pv~vK~~~~~---~~a~~l~~a--G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++.+....+.   +.++.+.+.  |++.+.++...|.    ....++.+.++++..+ ++||++ |++.+.+++.++..+
T Consensus       108 ~v~~~~g~~~~~~~~~~~l~~~~~g~~~i~i~~~~g~----~~~~~~~i~~lr~~~~-~~~vi~-g~v~t~e~A~~a~~a  181 (351)
T 2c6q_A          108 HLAASSGTGSSDFEQLEQILEAIPQVKYICLDVANGY----SEHFVEFVKDVRKRFP-QHTIMA-GNVVTGEMVEELILS  181 (351)
T ss_dssp             TEEEEECSSHHHHHHHHHHHHHCTTCCEEEEECSCTT----BHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHT
T ss_pred             eeEeecCCChHHHHHHHHHHhccCCCCEEEEEecCCC----cHHHHHHHHHHHHhcC-CCeEEE-EeCCCHHHHHHHHHh
Confidence            4554433333   445666776  9999888643221    1224566777777653 688885 678999999999999


Q ss_pred             CCCEEEEc
Q psy16780        141 GAKMVFVG  148 (202)
Q Consensus       141 GAd~V~ig  148 (202)
                      |||+|.++
T Consensus       182 GaD~I~v~  189 (351)
T 2c6q_A          182 GADIIKVG  189 (351)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999775

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=94.76  E-value=0.11  Score=45.26  Aligned_cols=92  Identities=11%  Similarity=0.125  Sum_probs=67.9

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++|+.+...  .+.++    ++.+.+.|++.|.=-        ..+.+++.+.++++.+  +
T Consensus       171 ~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~  240 (397)
T 2qde_A          171 PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQP--------LPAWDLDGMARLRGKV--A  240 (397)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEECC--------SCTTCHHHHHHHHTTC--S
T ss_pred             CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEEECC--------CChhhHHHHHHHHhhC--C
Confidence            5556678899999986  688988753  45544    455667788776410        0123566777776665  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||++++.+.+..++.+++..| +|.|++--
T Consensus       241 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~  271 (397)
T 2qde_A          241 TPIYADESAQELHDLLAIINKGAADGLMIKT  271 (397)
T ss_dssp             SCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred             CCEEEeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence            9999999999999999999986 89999854

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=94.66  E-value=0.096  Score=45.61  Aligned_cols=92  Identities=9%  Similarity=0.011  Sum_probs=67.9

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--c-CHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--L-TAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~-~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +++...+.++++|+.+  ++|+.+...  . +.+++    +.+.+.|++.+.=-      .  .+.+++.+.++++.+  
T Consensus       182 ~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iEeP------~--~~~~~~~~~~l~~~~--  251 (394)
T 3mqt_A          182 SDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIEAC------L--QHDDLIGHQKLAAAI--  251 (394)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEESC------S--CTTCHHHHHHHHHHS--
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEECC------C--CcccHHHHHHHHhhC--
Confidence            4555677899999886  678888754  5 66554    45566788877520      0  122566778888776  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++||++++.+.+..|+.+++..| +|.|++--
T Consensus       252 ~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~  283 (394)
T 3mqt_A          252 NTRLCGAEMSTTRFEAQEWLEKTGISVVQSDY  283 (394)
T ss_dssp             SSEEEECTTCCHHHHHHHHHHHHCCSEECCCT
T ss_pred             CCCEEeCCCcCCHHHHHHHHHcCCCCeEecCc
Confidence            89999999999999999999986 89998853

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=94.66  E-value=0.082  Score=42.86  Aligned_cols=60  Identities=22%  Similarity=0.203  Sum_probs=39.7

Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCHHH----------HHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780        108 ALPEIAKAVGHKVDVYLDGGVRYGTD----------VFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEF  174 (202)
Q Consensus       108 ~l~~i~~~~~~~ipiia~GGI~~~~D----------~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L  174 (202)
                      .+.++++..+ ..+++.+|||+....          ..+++.+|||.+.+||+++.+   ..   ..+.++.+++++
T Consensus       165 ~i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a---~d---p~~a~~~l~~~i  234 (239)
T 1dbt_A          165 EAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKA---ED---PVKAYKAVRLEW  234 (239)
T ss_dssp             GHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTS---SC---HHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCC---CC---HHHHHHHHHHHH
Confidence            3445544443 468999999986443          367889999999999998842   22   234455555544

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=94.61  E-value=0.086  Score=42.97  Aligned_cols=60  Identities=22%  Similarity=0.316  Sum_probs=39.9

Q ss_pred             HHHHHHHhCCCcEEEEecCCCCH-H---------HHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYG-T---------DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~-~---------D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      +..+++..+. .+++.+|||+.. .         .+.+++.+|||.+.+||+++.+   ..   ..+.++.++++++
T Consensus       167 i~~lr~~~~~-~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a---~d---p~~a~~~l~~~i~  236 (246)
T 2yyu_A          167 AAFIKERCGA-SFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRA---AD---PLRTYARLQHEWN  236 (246)
T ss_dssp             HHHHHHHHCT-TSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTS---SS---HHHHHHHHHHHCC
T ss_pred             HHHHHHhcCC-CCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCC---CC---HHHHHHHHHHHHH
Confidence            5666665543 459999999842 2         3777888999999999998852   22   2344555555443

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=94.61  E-value=0.12  Score=44.64  Aligned_cols=91  Identities=9%  Similarity=0.007  Sum_probs=66.8

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHc-CCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEM-GASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~a-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.+++    +.+.+. |++.|.=   +     ..+.+++.+.++++.+  
T Consensus       166 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--  235 (382)
T 2gdq_A          166 SFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEE---P-----LPFDQPQDYAMLRSRL--  235 (382)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEEC---C-----SCSSCHHHHHHHHTTC--
T ss_pred             CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEEC---C-----CCcccHHHHHHHHhhC--
Confidence            5566778999999987  688888753  455554    555666 7776641   0     0123566777777665  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      ++||++++.+.+..++.+++..| +|.|++-
T Consensus       236 ~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  266 (382)
T 2gdq_A          236 SVPVAGGENMKGPAQYVPLLSQRCLDIIQPD  266 (382)
T ss_dssp             SSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             CCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence            79999999999999999999987 8999873

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=94.59  E-value=0.085  Score=46.40  Aligned_cols=92  Identities=5%  Similarity=-0.045  Sum_probs=69.3

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++++|+.+  ++|+.+...  .+.++    ++.+.+.|++.|.=-      .  .+.+++.+.++++..  .+|
T Consensus       214 ~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~iEeP------~--~~~d~~~~~~l~~~~--~iP  283 (412)
T 3stp_A          214 RENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWLEEP------V--IADDVAGYAELNAMN--IVP  283 (412)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC------S--CTTCHHHHHHHHHTC--SSC
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC------C--CcccHHHHHHHHhCC--CCC
Confidence            45667899999987  688988754  45554    456677888887520      0  122567778887765  899


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                      |++++.+.+..|+.+++..| +|.|++--..
T Consensus       284 Ia~dE~~~~~~~~~~li~~~a~D~v~ik~~~  314 (412)
T 3stp_A          284 ISGGEHEFSVIGCAELINRKAVSVLQYDTNR  314 (412)
T ss_dssp             EEECTTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred             EEeCCCCCCHHHHHHHHHcCCCCEEecChhh
Confidence            99999999999999999987 8999986544

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=94.52  E-value=0.076  Score=46.28  Aligned_cols=89  Identities=7%  Similarity=0.006  Sum_probs=66.5

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++.+|+.+  ++++.+...  .++++    ++.+.+.|++.+.--        ..+.+++.+.++++.+  ++|
T Consensus       202 ~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iP  271 (410)
T 2gl5_A          202 KMGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEP--------IHPLNSDNMQKVSRST--TIP  271 (410)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEECS--------SCSSCHHHHHHHHHHC--SSC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEECC--------CChhhHHHHHHHHhhC--CCC
Confidence            44667899999986  688888754  45544    455667787766420        0123577788888777  799


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      |++++.+.+..++.+++..| +|+|++-
T Consensus       272 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik  299 (410)
T 2gl5_A          272 IATGERSYTRWGYRELLEKQSIAVAQPD  299 (410)
T ss_dssp             EEECTTCCTTHHHHHHHHTTCCSEECCC
T ss_pred             EEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence            99999999999999999987 7999873

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=94.42  E-value=0.17  Score=42.15  Aligned_cols=92  Identities=14%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHH---HHHHhCCCEEEEcHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVF---KALALGAKMVFVGRPA  151 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~---kal~~GAd~V~ig~~~  151 (202)
                      ..++.+++.|+|++.+.|+.|....-.... .+.++.+++.+.+  -|.+.|+..+.+-+.   .+-.+|||++++-.|+
T Consensus        23 ~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~  100 (286)
T 2r91_A           23 NHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR--VIVQVASLNADEAIALAKYAESRGAEAVASLPPY  100 (286)
T ss_dssp             HHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS--EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred             HHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            446778899999999987655322111111 2234455555544  344466554444332   2334799999999998


Q ss_pred             HHHhhhcChHHHHHHHHHHH
Q psy16780        152 LWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       152 l~~~~~~G~~~v~~~i~~l~  171 (202)
                      ++.  .-..+++.++++.+.
T Consensus       101 y~~--~~s~~~l~~~f~~va  118 (286)
T 2r91_A          101 YFP--RLSERQIAKYFRDLC  118 (286)
T ss_dssp             SST--TCCHHHHHHHHHHHH
T ss_pred             CCC--CCCHHHHHHHHHHHH
Confidence            752  013455555544443

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=94.40  E-value=0.08  Score=45.53  Aligned_cols=90  Identities=12%  Similarity=0.056  Sum_probs=65.8

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHH-HHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIG-VEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l-~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +++...+.++.+|+.+  ++|+.+...  .+.+++    +.+ .+.|+ .|.=          ..++++.+.++++.+  
T Consensus       172 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~iE~----------P~~~~~~~~~l~~~~--  238 (371)
T 2ps2_A          172 EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-ALEA----------PCATWRECISLRRKT--  238 (371)
T ss_dssp             CHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EEEC----------CBSSHHHHHHHHTTC--
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cCcC----------CcCCHHHHHHHHhhC--
Confidence            4556678999999887  688888754  455554    444 55566 5421          112566777777665  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      ++||++++.+.+..++.+++..| +|+|++--.
T Consensus       239 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~  271 (371)
T 2ps2_A          239 DIPIIYDELATNEMSIVKILADDAAEGIDLKIS  271 (371)
T ss_dssp             CSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHH
T ss_pred             CCCEEeCCCcCCHHHHHHHHHhCCCCEEEechh
Confidence            79999999999999999999987 899998653

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=94.30  E-value=0.5  Score=40.55  Aligned_cols=88  Identities=10%  Similarity=0.118  Sum_probs=62.0

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--C-------------------------------------HHHHHHHHHcCCc
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--T-------------------------------------AEDAKIGVEMGAS   87 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--~-------------------------------------~~~a~~l~~aG~d   87 (202)
                      .+++...+.++++++.++.|+.|.+..  .                                     .+.++.+.+.|+|
T Consensus        45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~  124 (369)
T 3bw2_A           45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVP  124 (369)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCS
T ss_pred             CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCC
Confidence            345555667888888777787776431  0                                     3446778899999


Q ss_pred             EEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780         88 AIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        88 ~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      .|.++.  |      .++.+.+..+++ .  .++|+.  .+.+.+++.++...|+|++.+
T Consensus       125 ~V~~~~--g------~~~~~~i~~~~~-~--g~~v~~--~v~t~~~a~~a~~~GaD~i~v  171 (369)
T 3bw2_A          125 VVSFHF--G------VPDREVIARLRR-A--GTLTLV--TATTPEEARAVEAAGADAVIA  171 (369)
T ss_dssp             EEEEES--S------CCCHHHHHHHHH-T--TCEEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred             EEEEeC--C------CCcHHHHHHHHH-C--CCeEEE--ECCCHHHHHHHHHcCCCEEEE
Confidence            998843  2      234455666654 2  577776  478999999999999999988

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=94.30  E-value=0.12  Score=45.04  Aligned_cols=92  Identities=3%  Similarity=-0.057  Sum_probs=67.7

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--c-CHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--L-TAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~-~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +++...+.++++|+.+  ++++.+...  . +.+++    +.+.+.|++.+.--        ..+.+++.+.++++.+  
T Consensus       187 ~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--  256 (394)
T 3mkc_A          187 STKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAEAT--------LQHDDLSGHAKLVENT--  256 (394)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEESC--------SCTTCHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEECC--------CCchhHHHHHHHHhhC--
Confidence            4455667899999887  678888753  5 66554    55566788777520        0122566778887776  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++||++++.+.+..|+.+++..| +|.|++--
T Consensus       257 ~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~  288 (394)
T 3mkc_A          257 RSRICGAEMSTTRFEAEEWITKGKVHLLQSDY  288 (394)
T ss_dssp             SSCBEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred             CCCEEeCCCCCCHHHHHHHHHcCCCCeEecCc
Confidence            79999999999999999999987 89998843

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=94.29  E-value=0.33  Score=40.85  Aligned_cols=71  Identities=21%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +.++.+.++|||.|.+-.        +.++.+.+.++.+.+...+|++++-+-....++.+.-++|...|.++...+++
T Consensus       174 ~Ra~ay~eAGAd~i~~e~--------~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ra  244 (295)
T 1s2w_A          174 KRAEAYRNAGADAILMHS--------KKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA  244 (295)
T ss_dssp             HHHHHHHHTTCSEEEECC--------CSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcC--------CCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence            446788999999999842        13455677788888855599998633111123556667899999999887764

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=94.29  E-value=0.18  Score=43.57  Aligned_cols=91  Identities=12%  Similarity=0.068  Sum_probs=65.9

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.++..  .+.+++    +.+.+.|+ .|.       +   ..++++.+.++++..  +
T Consensus       171 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------q---P~~~~~~~~~l~~~~--~  237 (378)
T 3eez_A          171 DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFE-------Q---PGETLDDIAAIRPLH--S  237 (378)
T ss_dssp             CHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEE-------C---CSSSHHHHHHTGGGC--C
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEe-------c---CCCCHHHHHHHHhhC--C
Confidence            4556677899999887  678888854  455554    44555665 442       1   112566666666655  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                      +||++++.+.+..|+.+++..| +|.|++-...
T Consensus       238 iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~  270 (378)
T 3eez_A          238 APVSVDECLVTLQDAARVARDGLAEVFGIKLNR  270 (378)
T ss_dssp             CCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred             CCEEECCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence            9999999999999999999986 8999997654

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=94.28  E-value=0.18  Score=43.21  Aligned_cols=94  Identities=12%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.+++    +.+.+.|++.|.=   +     ..+.+++.+.++++..  .
T Consensus       165 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--~  234 (354)
T 3jva_A          165 GIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQ---P-----VKRRDLEGLKYVTSQV--N  234 (354)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEEC---C-----SCTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC---C-----CChhhHHHHHHHHHhC--C
Confidence            4445567888888876  578887753  455554    4445566666541   0     0122566777887776  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                      +||++++.+.+..|+.+++..| +|.|++--..
T Consensus       235 iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~  267 (354)
T 3jva_A          235 TTIMADESCFDAQDALELVKKGTVDVINIKLMK  267 (354)
T ss_dssp             SEEEESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred             CCEEEcCCcCCHHHHHHHHHcCCCCEEEECchh
Confidence            9999999999999999999986 7999987543

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=94.28  E-value=0.15  Score=44.06  Aligned_cols=93  Identities=10%  Similarity=0.067  Sum_probs=69.2

Q ss_pred             cCccccHHHHHHHHHhc--CCCEEEEec--cC-HHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         47 LDETINWSDVTWLKTIT--KLPIVLKGI--LT-AEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~-~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      ++++...+.++++|+.+  ++|+.+...  .+ .+++    +.+.+.|++.|.=   +   .  .+.+++.+.++++.. 
T Consensus       174 ~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~iEq---P---~--~~~~~~~~~~l~~~~-  244 (374)
T 3sjn_A          174 DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWIEE---P---V--LADSLISYEKLSRQV-  244 (374)
T ss_dssp             SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEEEC---S---S--CTTCHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEEEC---C---C--CcccHHHHHHHHhhC-
Confidence            36677788999999986  678988854  56 6664    4455677777741   0   0  122567778887776 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                       .+||++++.+.+..|+.+++..| +|.|++--
T Consensus       245 -~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~  276 (374)
T 3sjn_A          245 -SQKIAGGESLTTRYEFQEFITKSNADIVQPDI  276 (374)
T ss_dssp             -SSEEEECTTCCHHHHHHHHHHHHCCSEECCBT
T ss_pred             -CCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence             89999999999999999999875 89988743

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=94.27  E-value=0.099  Score=46.25  Aligned_cols=91  Identities=12%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=-        ..+.+++.+.++++..  .+|
T Consensus       187 ~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iP  256 (433)
T 3rcy_A          187 SLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWYEEP--------VPPDNVGAMAQVARAV--RIP  256 (433)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHS--SSC
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEEECC--------CChhhHHHHHHHHhcc--CCC
Confidence            44667899999987  678888743  45555    456677888887521        0122567788888776  899


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      |++++.+.+..|+.+++..| +|.|++--.
T Consensus       257 Ia~dE~~~~~~~~~~~l~~g~~D~v~~d~~  286 (433)
T 3rcy_A          257 VATGERLTTKAEFAPVLREGAAAILQPALG  286 (433)
T ss_dssp             EEECTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred             EEecCCCCCHHHHHHHHHcCCCCEEEeCch
Confidence            99999999999999999987 899988653

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=94.22  E-value=0.079  Score=45.95  Aligned_cols=90  Identities=12%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ++...+.++.+|+.+  ++++.+...  .+.++    ++.+.+.|++.|.-   +     ..+.+++.+.++++.+  ++
T Consensus       182 ~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE~---P-----~~~~~~~~~~~l~~~~--~i  251 (392)
T 2poz_A          182 IELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEE---P-----CDPFDNGALKVISEQI--PL  251 (392)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC---C-----SCTTCHHHHHHHHHHC--SS
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC---C-----CCcccHHHHHHHHhhC--CC
Confidence            345667899999986  688888754  45544    45566777776641   0     0123567778887776  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      ||++++.+.+..++.+++..| +|+|++-
T Consensus       252 pIa~dE~~~~~~~~~~~i~~~~~d~v~ik  280 (392)
T 2poz_A          252 PIAVGERVYTRFGFRKIFELQACGIIQPD  280 (392)
T ss_dssp             CEEECTTCCHHHHHHHHHTTTCCSEECCC
T ss_pred             CEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence            999999999999999999987 8999873

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=94.20  E-value=0.087  Score=45.87  Aligned_cols=89  Identities=9%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++.+|+.+  ++++.+..-  .+.++    ++.+.+.|++.+.=-        ..+.+++.+.++++.+  ++|
T Consensus       199 ~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iP  268 (407)
T 2o56_A          199 RLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEEP--------VMPLNPAQMKQVADKV--NIP  268 (407)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS--------SCSSSHHHHHHHHHHC--CSC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEeCC--------CChhhHHHHHHHHHhC--CCC
Confidence            44667899999986  688988753  45544    455667788776410        0123577788888777  799


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      |++++.+.+..++.+++..| +|+|++-
T Consensus       269 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik  296 (407)
T 2o56_A          269 LAAGERIYWRWGYRPFLENGSLSVIQPD  296 (407)
T ss_dssp             EEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred             EEeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence            99999999999999999987 8999873

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=94.18  E-value=0.071  Score=44.76  Aligned_cols=45  Identities=11%  Similarity=0.128  Sum_probs=39.4

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .....+.|+++++.+  ++||++.+ +.++++++.+.++|||+|++++
T Consensus       210 ~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS  257 (286)
T 3vk5_A          210 EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG  257 (286)
T ss_dssp             SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred             CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence            334578999999999  89999996 4899999999999999999965

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=94.17  E-value=0.27  Score=42.25  Aligned_cols=92  Identities=10%  Similarity=-0.008  Sum_probs=66.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHH----HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAE----DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~----~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.+    .++.+.+.|++.|.=   +     ..+.+++.+.++++..  .
T Consensus       170 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq---P-----~~~~~~~~~~~l~~~~--~  239 (370)
T 1chr_A          170 SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQ---P-----VGRENTQALRRLSDNN--R  239 (370)
T ss_dssp             CSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEEEC---C-----SCTTCHHHHHHHHHHS--C
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC---C-----CCcccHHHHHHHHhhC--C
Confidence            4455677888888887  478888743  3333    345667777776641   0     0123456678887776  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||+++..+.+..|+.+++..| +|.|++--
T Consensus       240 iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~  270 (370)
T 1chr_A          240 VAIMADESLSTLASAFDLARDRSVDVFSLKL  270 (370)
T ss_dssp             SEEEESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred             CCEEeCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence            9999999999999999999986 89998853

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=94.14  E-value=0.41  Score=41.42  Aligned_cols=91  Identities=13%  Similarity=-0.015  Sum_probs=65.4

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHH--cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVE--MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~--aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.++    ++.+.+  .+++.|.=   +     ..+.+++.+.++++.+.
T Consensus       172 ~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iEq---P-----~~~~~~~~~~~l~~~~~  243 (389)
T 2oz8_A          172 DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVED---P-----ILRHDHDGLRTLRHAVT  243 (389)
T ss_dssp             SHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEES---C-----BCTTCHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEeC---C-----CCCcCHHHHHHHHhhCC
Confidence            4556678999999987  678888753  45544    456677  55555431   0     01235667777776652


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                       ++||++++.+ +..|+.+++..| +|+|++.
T Consensus       244 -~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik  273 (389)
T 2oz8_A          244 -WTQINSGEYL-DLQGKRLLLEAHAADILNVH  273 (389)
T ss_dssp             -SSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred             -CCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence             6999999999 999999999987 8999996

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=94.11  E-value=1.1  Score=38.11  Aligned_cols=110  Identities=14%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCC--ccc----hHHHHHHHHHHhCCCcEEEEecCC-----------------
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDY--VPA----SIEALPEIAKAVGHKVDVYLDGGV-----------------  128 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~--~~~----~~~~l~~i~~~~~~~ipiia~GGI-----------------  128 (202)
                      .+|+++.... +.|+|.+-++-+.-.....  +.|    +++.|.++++.+  ++|++.-||=                 
T Consensus       153 TdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~--~vpLVlHGgSsvp~~~~~~~~~~gg~~  230 (323)
T 2isw_A          153 TEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLT--GIPLVMHGSSSVPKDVKDMINKYGGKM  230 (323)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHH--CSCEEECSCCCCCHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHh--CCCeEEECCCCCCHHHHHHHHHhcccc
Confidence            4688888776 6999999886422111121  233    356789998888  7999999953                 


Q ss_pred             -----CCHHHHHHHHHhCCCEEEEcHHHHHHh----h----hc----Ch-HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        129 -----RYGTDVFKALALGAKMVFVGRPALWGL----A----HS----GK-SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       129 -----~~~~D~~kal~~GAd~V~ig~~~l~~~----~----~~----G~-~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                           ...+++.+++..|..=|-+++-+-.+.    .    ..    .+ .-+....+.+++.++..|..+|+.
T Consensus       231 ~~~~Gvp~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~  304 (323)
T 2isw_A          231 PDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSA  304 (323)
T ss_dssp             TTCBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             ccCCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                 235789999999999999999654321    1    11    11 223444567788888888888863

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=94.07  E-value=0.12  Score=44.74  Aligned_cols=91  Identities=9%  Similarity=-0.071  Sum_probs=65.5

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=   +   .  .+.+++.+.++++.+  +
T Consensus       192 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq---P---~--~~~d~~~~~~l~~~~--~  261 (392)
T 1tzz_A          192 PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEE---V---G--DPLDYALQAALAEFY--P  261 (392)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC---C---S--CTTCHHHHHHHTTTC--C
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeecC---C---C--ChhhHHHHHHHHhhC--C
Confidence            4455677899999876  578888743  45544    45566677776641   0   0  123566677776655  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-----CCEEEEc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-----AKMVFVG  148 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-----Ad~V~ig  148 (202)
                      +||++++.+.+..++.+++..|     +|+|++-
T Consensus       262 iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik  295 (392)
T 1tzz_A          262 GPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD  295 (392)
T ss_dssp             SCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred             CCEEECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence            9999999999999999999988     8999884

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=94.06  E-value=0.88  Score=39.03  Aligned_cols=91  Identities=14%  Similarity=0.055  Sum_probs=65.7

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHHHHHHH---cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDAKIGVE---MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a~~l~~---aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      +++...+.++.+|+.+  ++|+.+...  .+.+++..+.+   .|+ .|.       +   ..++++.+.++++.+  ++
T Consensus       172 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~iE-------q---P~~d~~~~~~l~~~~--~i  238 (378)
T 2qdd_A          172 DPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WIE-------Q---PCQTLDQCAHVARRV--AN  238 (378)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EEE-------C---CSSSHHHHHHHHTTC--CS
T ss_pred             ChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EEE-------c---CCCCHHHHHHHHHhC--CC
Confidence            4556778999999987  688888854  56666644332   344 331       1   112667777777665  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                      ||++++.+.+..++.+++..| +|+|++-...
T Consensus       239 PI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~  270 (378)
T 2qdd_A          239 PIMLDECLHEFSDHLAAWSRGACEGVKIKPNR  270 (378)
T ss_dssp             CEEECTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred             CEEECCCcCCHHHHHHHHHhCCCCEEEecccc
Confidence            999999999999999999986 8999996543

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=94.05  E-value=0.19  Score=41.97  Aligned_cols=92  Identities=14%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH---HhCCCEEEEcHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL---ALGAKMVFVGRPA  151 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal---~~GAd~V~ig~~~  151 (202)
                      ..++.+++.|+|++.+.|+.|....-..... +.+..+++.+.+  -|.+.|+..+.+-+..+-   .+|||++++-.|+
T Consensus        24 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g--viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~  101 (293)
T 1w3i_A           24 IHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK--IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPY  101 (293)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC--EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC--EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            4467788999999999876553211111111 223334444433  344466554444333222   2699999999998


Q ss_pred             HHHhhhcChHHHHHHHHHHH
Q psy16780        152 LWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       152 l~~~~~~G~~~v~~~i~~l~  171 (202)
                      ++.  .-..+++.++++.+.
T Consensus       102 y~~--~~s~~~l~~~f~~va  119 (293)
T 1w3i_A          102 YYP--RMSEKHLVKYFKTLC  119 (293)
T ss_dssp             SCS--SCCHHHHHHHHHHHH
T ss_pred             CCC--CCCHHHHHHHHHHHH
Confidence            752  013455555544443

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=94.04  E-value=0.13  Score=40.91  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc----CcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH----GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~----gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .+.++.+++  ++|++-... .+.++...+.+..+|++.+++.    ||+.   ..-+|+.+..+.   ..+.|++..||
T Consensus        88 ~~~~~~l~~--~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG---~~fdw~~l~~~~---~~~~p~~LAGG  159 (205)
T 1nsj_A           88 IELCRKIAE--RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSG---KTFDWSLILPYR---DRFRYLVLSGG  159 (205)
T ss_dssp             HHHHHHHHT--TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCC---SCCCGGGTGGGG---GGSSCEEEESS
T ss_pred             HHHHHHHhc--CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCC---CccCHHHHHhhh---cCCCcEEEECC
Confidence            356666653  477773333 3445555554555999999864    3432   122444443321   12679999999


Q ss_pred             CCCHHHHHHHHH-hCCCEEEEcHHH
Q psy16780        128 VRYGTDVFKALA-LGAKMVFVGRPA  151 (202)
Q Consensus       128 I~~~~D~~kal~-~GAd~V~ig~~~  151 (202)
                      + +++.+.+++. .++.+|=+.|.+
T Consensus       160 L-~peNV~~ai~~~~p~gVDvsSGv  183 (205)
T 1nsj_A          160 L-NPENVRSAIDVVRPFAVDVSSGV  183 (205)
T ss_dssp             C-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred             C-CHHHHHHHHHhcCCCEEEECCce
Confidence            8 7788988887 699999999865

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=94.04  E-value=0.061  Score=44.64  Aligned_cols=42  Identities=26%  Similarity=0.472  Sum_probs=38.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.|+.+++..++||++.. +.+++++..+.+.|+|+|.|..
T Consensus       175 ~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgS  217 (265)
T 1wv2_A          175 NPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNT  217 (265)
T ss_dssp             CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred             CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence            57899999998899999984 5899999999999999999965

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=94.01  E-value=0.6  Score=40.24  Aligned_cols=91  Identities=16%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             HHHHHHhcCCCEEEEec--c----CHHHHHHHHHcCCcEEEeecc----CcC------------------CCC-------
Q psy16780         56 VTWLKTITKLPIVLKGI--L----TAEDAKIGVEMGASAIMVSNH----GGR------------------QLD-------  100 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~--~----~~~~a~~l~~aG~d~I~v~~~----gg~------------------~~~-------  100 (202)
                      ++++++..+.|.++.+-  .    +.+.++++.++|++++.+.-.    +++                  -..       
T Consensus       114 ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~  193 (370)
T 1gox_A          114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMD  193 (370)
T ss_dssp             HHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---
T ss_pred             HHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccc
Confidence            45565555567777752  2    245678889999999988642    110                  000       


Q ss_pred             --Cc-------------cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        101 --YV-------------PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       101 --~~-------------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                        .+             ..+++.+..+++..  ++||+. +++.+.+++..+..+|||+|.++.
T Consensus       194 ~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~--~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs~  254 (370)
T 1gox_A          194 KANDSGLSSYVAGQIDRSLSWKDVAWLQTIT--SLPILV-KGVITAEDARLAVQHGAAGIIVSN  254 (370)
T ss_dssp             ------HHHHHHHTBCTTCCHHHHHHHHHHC--CSCEEE-ECCCSHHHHHHHHHTTCSEEEECC
T ss_pred             cccCccHHHHHHhhcCccchHHHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEECC
Confidence              00             11345566777766  799986 778999999999999999999953

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=94.00  E-value=0.086  Score=46.12  Aligned_cols=90  Identities=12%  Similarity=0.078  Sum_probs=67.6

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=-        ..+.+++.+.++++.+  .+|
T Consensus       192 ~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iP  261 (404)
T 4e5t_A          192 ERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWFEEP--------IPPEKPEDMAEVARYT--SIP  261 (404)
T ss_dssp             HHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHC--SSC
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEEECC--------CCcccHHHHHHHHhhC--CCC
Confidence            44567899999987  688988753  45554    456677888887520        0122566778888777  899


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      |++++.+.+..|+.+++..| +|.|++--
T Consensus       262 Ia~dE~~~~~~~~~~~i~~~a~d~v~~d~  290 (404)
T 4e5t_A          262 VATGERLCTKYEFSRVLETGAASILQMNL  290 (404)
T ss_dssp             EEECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred             EEeCCCcCCHHHHHHHHHhCCCCEEecCc
Confidence            99999999999999999987 78888753

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=93.95  E-value=0.085  Score=45.87  Aligned_cols=91  Identities=12%  Similarity=0.018  Sum_probs=67.0

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++.+|+.+  ++++.+...  .+.++    ++.+.+.|++.+.=   +     ..+.+++.+.++++.+  ++|
T Consensus       193 ~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~---P-----~~~~d~~~~~~l~~~~--~iP  262 (403)
T 2ox4_A          193 KIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEE---I-----NTPLNPRLLKEAKKKI--DIP  262 (403)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC---C-----SCTTSTHHHHHHHHTC--CSC
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEeC---C-----CChhhHHHHHHHHHhC--CCC
Confidence            44667899999986  688888754  45544    45566777776641   0     0123567778887766  799


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      |++++.+.+..++.+++..| +|+|++--.
T Consensus       263 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~~  292 (403)
T 2ox4_A          263 LASGERIYSRWGFLPFLEDRSIDVIQPDLG  292 (403)
T ss_dssp             EEECTTCCHHHHHHHHHHTTCCSEECCCHH
T ss_pred             EEecCCcCCHHHHHHHHHcCCCCEEecCcc
Confidence            99999999999999999987 899998543

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=93.77  E-value=0.2  Score=41.75  Aligned_cols=91  Identities=14%  Similarity=0.087  Sum_probs=49.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHH---HHHhCCCEEEEcHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFK---ALALGAKMVFVGRPA  151 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~k---al~~GAd~V~ig~~~  151 (202)
                      ..++.+++.|+|++.+.|+.|....-..... +.+..+++.+++  -|.+.|+..+.+-+..   +-.+|||++++-.|+
T Consensus        24 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g--ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~  101 (288)
T 2nuw_A           24 THAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK--LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPY  101 (288)
T ss_dssp             HHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC--EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred             HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            4467788999999999876553211111111 123333333333  3344555444433322   223799999999998


Q ss_pred             HHHhhhcChHHHHHHHHHH
Q psy16780        152 LWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       152 l~~~~~~G~~~v~~~i~~l  170 (202)
                      ++.  .-..+++.++++.+
T Consensus       102 y~~--~~s~~~l~~~f~~v  118 (288)
T 2nuw_A          102 YFP--RLPEKFLAKYYEEI  118 (288)
T ss_dssp             SSC--SCCHHHHHHHHHHH
T ss_pred             CCC--CCCHHHHHHHHHHH
Confidence            752  01345555444444

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=93.63  E-value=0.11  Score=45.47  Aligned_cols=89  Identities=11%  Similarity=0.018  Sum_probs=65.4

Q ss_pred             ccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         51 INWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        51 ~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ...+.++++|+.+  ++|+.+...  .+.++    ++.+.+.|++.|.=-      .  .+.+++.+.++++.+  .+||
T Consensus       163 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP------~--~~~d~~~~~~l~~~~--~iPI  232 (405)
T 3rr1_A          163 AAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEP------V--LAEQAETYARLAAHT--HLPI  232 (405)
T ss_dssp             HHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCEECS------S--CCSSTHHHHHHHTTC--SSCE
T ss_pred             HHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC------C--CcccHHHHHHHHhcC--CCCE
Confidence            3467899999987  688888753  45555    456667788777520      0  122556677776655  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++++.+.+..|+.+++..| +|.|++--
T Consensus       233 a~dE~i~~~~~~~~~l~~~a~d~v~~d~  260 (405)
T 3rr1_A          233 AAGERMFSRFDFKRVLEAGGVSILQPDL  260 (405)
T ss_dssp             EECTTCCSHHHHHHHHHHCCCSEECCBT
T ss_pred             EecCCcCCHHHHHHHHHHhCCCeEEECh
Confidence            9999999999999999987 89998843

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=93.62  E-value=0.41  Score=40.38  Aligned_cols=95  Identities=21%  Similarity=0.164  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhcCCCEEEEecc--CHHH----HHHHHHcCCcEEEeeccCcCC-CCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         53 WSDVTWLKTITKLPIVLKGIL--TAED----AKIGVEMGASAIMVSNHGGRQ-LDYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~--~~~~----a~~l~~aG~d~I~v~~~gg~~-~~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      .+.++++. .++.||++|-..  ++++    ++.+.+.|-+-|++.-.|-+- .+.-..++..++.+++ +  .+||+.+
T Consensus       145 ~~LLr~va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk~-~--~~PV~~D  220 (298)
T 3fs2_A          145 TDLLIAAA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAG-L--GAPVIFD  220 (298)
T ss_dssp             HHHHHHHH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHT-T--TSCEEEE
T ss_pred             HHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHHH-c--CCcEEEc
Confidence            44677765 469999999763  5533    455677888877775443211 1111135667777766 5  7999984


Q ss_pred             ---------------cCCCCH--HHHHHHHHhCCCEEEEcHHH
Q psy16780        126 ---------------GGVRYG--TDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       126 ---------------GGI~~~--~D~~kal~~GAd~V~ig~~~  151 (202)
                                     ||-|..  .-...|+++|||+++|=+.+
T Consensus       221 ~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~  263 (298)
T 3fs2_A          221 ATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE  263 (298)
T ss_dssp             HHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred             CCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence                           344332  23446788999998886643

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=93.58  E-value=0.25  Score=42.99  Aligned_cols=91  Identities=10%  Similarity=0.016  Sum_probs=67.5

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~  118 (202)
                      +++...+.++++|+.+  ++++.+..-  .+.++    ++.+.+.|++.|.=   +     ..+.+ ++.+.++++..  
T Consensus       181 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe---P-----~~~~d~~~~~~~l~~~~--  250 (392)
T 3ddm_A          181 DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLEE---P-----LRADRPAAEWAELAQAA--  250 (392)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC---C-----SCTTSCHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEEC---C-----CCccchHHHHHHHHHhc--
Confidence            4555677899999986  678888754  45554    45566778887751   0     01224 67778887776  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      .+||++++.+.+..|+.+++..| +|.|++-
T Consensus       251 ~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k  281 (392)
T 3ddm_A          251 PMPLAGGENIAGVAAFETALAARSLRVMQPD  281 (392)
T ss_dssp             SSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred             CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence            79999999999999999999987 7888874

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=93.55  E-value=0.55  Score=38.75  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhcCCCEEEEecc--CHHHHH----HHHHcCCcEEEeeccCcCCC---CCccchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGIL--TAEDAK----IGVEMGASAIMVSNHGGRQL---DYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~--~~~~a~----~l~~aG~d~I~v~~~gg~~~---~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ...++++.+ ++.||++|...  +++++.    .+...|-+-+.+--+|++..   .....++..+..+++..  .+||+
T Consensus       120 ~~ll~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~--~~pVi  196 (262)
T 1zco_A          120 FELLKEVGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS--HLPII  196 (262)
T ss_dssp             HHHHHHHTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEE
T ss_pred             HHHHHHHHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh--CCCEE
Confidence            446777765 69999999763  666643    44567876666655554332   11223556777777765  68997


Q ss_pred             Eec----CCCCH--HHHHHHHHhCCCEEEEcHHHH
Q psy16780        124 LDG----GVRYG--TDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       124 a~G----GI~~~--~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ++.    |.+..  .=+..+.++||+++++=+.+-
T Consensus       197 ~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~  231 (262)
T 1zco_A          197 VDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPE  231 (262)
T ss_dssp             ECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred             EEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence            743    33331  224456779999999987643

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=93.55  E-value=0.091  Score=46.19  Aligned_cols=88  Identities=8%  Similarity=-0.097  Sum_probs=66.1

Q ss_pred             cHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ..+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=-      .  .+.+++.+.++++.+  .+||+
T Consensus       206 d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP------~--~~~d~~~~~~l~~~~--~iPIa  275 (418)
T 3r4e_A          206 VPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLEDC------T--PAENQEAFRLVRQHT--VTPLA  275 (418)
T ss_dssp             HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEESC------S--CCSSGGGGHHHHHHC--CSCEE
T ss_pred             HHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEECC------C--CccCHHHHHHHHhcC--CCCEE
Confidence            467899999987  688988754  45554    466677888887520      0  112455677777776  79999


Q ss_pred             EecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        124 LDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +++.+.+..|+.+++..| +|.|++--
T Consensus       276 ~dE~~~~~~~~~~~l~~~a~d~v~~k~  302 (418)
T 3r4e_A          276 VGEIFNTIWDAKDLIQNQLIDYIRATV  302 (418)
T ss_dssp             ECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred             EcCCcCCHHHHHHHHHcCCCCeEecCc
Confidence            999999999999999987 89998754

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=93.53  E-value=0.12  Score=45.62  Aligned_cols=89  Identities=7%  Similarity=-0.150  Sum_probs=67.4

Q ss_pred             ccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         51 INWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        51 ~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ...+.++++|+.+  ++|+.+...  .+.++    ++.+.+.|++.|.---        .+.+++.+.++++.+  ++||
T Consensus       212 ~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~--------~~~d~~~~~~l~~~~--~iPI  281 (425)
T 3vcn_A          212 SVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDSV--------PAENQAGFRLIRQHT--TTPL  281 (425)
T ss_dssp             TTHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCS--------CCSSTTHHHHHHHHC--CSCE
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCC--------ChhhHHHHHHHHhcC--CCCE
Confidence            4578899999987  678888754  45555    4666778888875210        112456677887776  8999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++++.+.+..++.+++..| +|.|++--
T Consensus       282 a~dE~~~~~~~~~~~i~~~a~d~v~~k~  309 (425)
T 3vcn_A          282 AVGEIFAHVWDAKQLIEEQLIDYLRATV  309 (425)
T ss_dssp             EECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred             EeCCCcCCHHHHHHHHHcCCCCeEecCh
Confidence            9999999999999999987 89988754

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=93.53  E-value=0.092  Score=42.05  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH---H------HHHHHHhCCCEEEE
Q psy16780         77 DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT---D------VFKALALGAKMVFV  147 (202)
Q Consensus        77 ~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~---D------~~kal~~GAd~V~i  147 (202)
                      .++. .+.|+| ++.+.             ..+..+++.++  .| +.++||+-..   |      ..+ +.+|||.+.+
T Consensus       131 ~a~~-~e~G~d-vV~~~-------------~~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVv  191 (213)
T 1vqt_A          131 IEKL-NKLGCD-FVLPG-------------PWAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVL  191 (213)
T ss_dssp             HHHH-HHHTCE-EECCH-------------HHHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEE
T ss_pred             HHHH-hcCCCE-EEEcH-------------HHHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEE
Confidence            3556 888999 54421             33444544442  35 8888986532   2      677 8999999999


Q ss_pred             cHHHHH
Q psy16780        148 GRPALW  153 (202)
Q Consensus       148 g~~~l~  153 (202)
                      ||+++.
T Consensus       192 GR~I~~  197 (213)
T 1vqt_A          192 GREIYL  197 (213)
T ss_dssp             SHHHHT
T ss_pred             ChhhcC
Confidence            999985

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=93.52  E-value=1.2  Score=45.18  Aligned_cols=119  Identities=10%  Similarity=0.099  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCc-CCCCCc---cchHHHHHHHHHH-----hCCCcEEEE-ecCCCCHHHHHHHHHhCCCEE
Q psy16780         76 EDAKIGVEMGASAIMVSNHGG-RQLDYV---PASIEALPEIAKA-----VGHKVDVYL-DGGVRYGTDVFKALALGAKMV  145 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg-~~~~~~---~~~~~~l~~i~~~-----~~~~ipiia-~GGI~~~~D~~kal~~GAd~V  145 (202)
                      +.|..+++.|+..+++|-++. ...+..   .|.+-++..+.++     ++.++-++. +|-+|+.-+++-.+-.||++|
T Consensus       585 ~~a~~av~~g~~iliLsDr~~~~~~~~~~~~ip~lla~~avh~~Li~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av  664 (1520)
T 1ofd_A          585 KTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAI  664 (1520)
T ss_dssp             HHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHCCCcEEEEcCCCCcCCCCCCccCcCHHHHHHHHHHHHHhcCCcccccEEEEeCCcChHHHHHHHHHcchhhh
Confidence            456778899999999998651 112221   2344444444443     234677777 788999999999999999999


Q ss_pred             EEcHHH--HHHh---------hhcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780        146 FVGRPA--LWGL---------AHSG-------KSGVRKVLDILINEFDQALALSGCTSVGEIQREMV  194 (202)
Q Consensus       146 ~ig~~~--l~~~---------~~~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~  194 (202)
                      -=--+|  +..+         ...|       .+.+.++++.+.++|...|..+|.++++.-++..+
T Consensus       665 ~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqi  731 (1520)
T 1ofd_A          665 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQI  731 (1520)
T ss_dssp             ECHHHHHHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHhcccchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCcee
Confidence            732222  1112         1122       35788999999999999999999999998877643

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=93.51  E-value=0.23  Score=43.50  Aligned_cols=89  Identities=8%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             ccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         51 INWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        51 ~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ...+.++++|+.+  ++++.+-..  .+.+++    +.+.+.|++.|.--      + ..+.+++.+.++++..  .+||
T Consensus       198 ~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP------~-~~~~~~~~~~~l~~~~--~iPI  268 (410)
T 3dip_A          198 DGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDP------I-AKMDNIPAVADLRRQT--RAPI  268 (410)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEECC------B-SCTTCHHHHHHHHHHH--CCCE
T ss_pred             HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC------C-CCcccHHHHHHHHhhC--CCCE
Confidence            4567899999987  578888643  466554    45567788877621      0 0122566778887777  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      ++++.+.+..++.+++..| +|.|++-
T Consensus       269 a~dE~~~~~~~~~~~l~~~~~d~v~~k  295 (410)
T 3dip_A          269 CGGENLAGTRRFHEMLCADAIDFVMLD  295 (410)
T ss_dssp             EECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             EecCCcCCHHHHHHHHHcCCCCeEeec
Confidence            9999999999999999987 7999884

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=93.49  E-value=2.9  Score=35.23  Aligned_cols=110  Identities=18%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             cCHHHHHHHH-HcCCcEEEeecc---CcCCCCCc-cchHHHHHHHHHHhCCCcEEEEecCC-------------------
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNH---GGRQLDYV-PASIEALPEIAKAVGHKVDVYLDGGV-------------------  128 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~---gg~~~~~~-~~~~~~l~~i~~~~~~~ipiia~GGI-------------------  128 (202)
                      .+|+++.... +.|+|.+-++-+   |-...++. .-+++.|.++.+.+  .+|++.-||=                   
T Consensus       153 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~--~vpLVlHGgSsv~~~~~~~~~~~gg~~~~  230 (305)
T 1rvg_A          153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE  230 (305)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred             CCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc--CCCEEEeCCCCCcHHHHHHHHhhcccccc
Confidence            4588888776 599999988642   22211121 23667899998888  6999998875                   


Q ss_pred             --C-CHHHHHHHHHhCCCEEEEcHHHHHHh----h---hcC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        129 --R-YGTDVFKALALGAKMVFVGRPALWGL----A---HSG-----K-SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       129 --~-~~~D~~kal~~GAd~V~ig~~~l~~~----~---~~G-----~-~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                        . ..+++.+++..|..=|-+++-+-.+.    .   .+.     + .-+....+.+++.++..|..+|+.
T Consensus       231 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~  302 (305)
T 1rvg_A          231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV  302 (305)
T ss_dssp             CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              3 45778889999999999999654321    1   111     1 123344456777777778877764

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=93.44  E-value=0.1  Score=45.95  Aligned_cols=89  Identities=7%  Similarity=-0.119  Sum_probs=66.8

Q ss_pred             ccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         51 INWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        51 ~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ...+.++++|+.+  ++|+.+...  .+.++    ++.+.+.|++.|.=--        .+.+++.+.++++.+  .+||
T Consensus       211 ~d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~--------~~~d~~~~~~l~~~~--~iPI  280 (424)
T 3v3w_A          211 YIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDAV--------PAENQESFKLIRQHT--TTPL  280 (424)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCS--------CCSSTTHHHHHHHHC--CSCE
T ss_pred             HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEECCC--------ChHhHHHHHHHHhhC--CCCE
Confidence            3467899999987  688988754  45555    4566778888875210        112456677887776  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++++.+.+..++.++++.| +|.|++--
T Consensus       281 a~dE~~~~~~~~~~~i~~ga~d~v~~k~  308 (424)
T 3v3w_A          281 AVGEVFNSIHDCRELIQNQWIDYIRTTI  308 (424)
T ss_dssp             EECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred             EEccCcCCHHHHHHHHHcCCCCeEeecc
Confidence            9999999999999999987 79988754

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=93.38  E-value=0.1  Score=43.04  Aligned_cols=42  Identities=21%  Similarity=0.500  Sum_probs=37.1

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.++++++..++||++.. +.++++++.+.++|+|+|.|+.
T Consensus       166 ~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS  208 (264)
T 1xm3_A          166 NPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT  208 (264)
T ss_dssp             CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred             CHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence            36789999998899999985 5689999999999999999965

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=93.36  E-value=0.11  Score=45.28  Aligned_cols=89  Identities=16%  Similarity=0.003  Sum_probs=65.5

Q ss_pred             ccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         51 INWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        51 ~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ...+.++++|+.+  ++++.+...  .+.+++    +.+.+.|++.|.=-      .  .+.+++.+.++++.+  .+||
T Consensus       186 ~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP------~--~~~~~~~~~~l~~~~--~iPI  255 (401)
T 3sbf_A          186 NTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDI------L--PPNQTEWLDNIRSQS--SVSL  255 (401)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS------S--CTTCGGGHHHHHTTC--CCCE
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC------C--ChhHHHHHHHHHhhC--CCCE
Confidence            4467899999987  688998854  455554    55667788777520      0  112455677776655  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++++.+.+..|+.+++..| +|.|++--
T Consensus       256 a~dE~~~~~~~~~~~i~~~~~d~v~~k~  283 (401)
T 3sbf_A          256 GLGELFNNPEEWKSLIANRRIDFIRCHV  283 (401)
T ss_dssp             EECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred             EeCCccCCHHHHHHHHhcCCCCEEecCc
Confidence            9999999999999999987 89988754

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=93.34  E-value=0.28  Score=42.18  Aligned_cols=94  Identities=11%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             Ccc-ccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         48 DET-INWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~-~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      ++. ...+.++++|+.+  ++++.+...  .+.+++    +.+.+.|++.|.=   +     ..+.+++.+.++++..  
T Consensus       166 ~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--  235 (367)
T 3dg3_A          166 RPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAEE---L-----CPADDVLSRRRLVGQL--  235 (367)
T ss_dssp             SSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEES---C-----SCTTSHHHHHHHHHHC--
T ss_pred             ChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEC---C-----CCcccHHHHHHHHHhC--
Confidence            444 4566788888876  567777643  455544    3444556665541   0     0122466677777776  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                      .+||++++.+.+..|+.+++..| +|.|++--..
T Consensus       236 ~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~  269 (367)
T 3dg3_A          236 DMPFIADESVPTPADVTREVLGGSATAISIKTAR  269 (367)
T ss_dssp             SSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHH
T ss_pred             CCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhh
Confidence            79999999999999999999987 8999985443

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=93.32  E-value=0.15  Score=44.98  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=65.8

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=-        ..+.+++.+.++++.+  +
T Consensus       211 ~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~  280 (428)
T 3bjs_A          211 AARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWLEEP--------FACNDFASYREVAKIT--P  280 (428)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCEECC--------SCTTCHHHHHHHTTTC--S
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCccCHHHHHHHHHhC--C
Confidence            4555678899999886  678887743  45544    456777888876410        0123566677776655  6


Q ss_pred             -cEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        120 -VDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       120 -ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                       +||++++.+.+..++.+++..| +|+|++-
T Consensus       281 ~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  311 (428)
T 3bjs_A          281 LVPIAAGENHYTRFEFGQMLDAGAVQVWQPD  311 (428)
T ss_dssp             SSCEEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred             CCcEEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence             9999999999999999999987 7888873

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=93.30  E-value=0.12  Score=42.08  Aligned_cols=41  Identities=27%  Similarity=0.190  Sum_probs=36.6

Q ss_pred             cHHHHHHHHHhc-CCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.+ ++||++.+. .++++++.+. .|||+|++++
T Consensus       167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS  209 (228)
T 3vzx_A          167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN  209 (228)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred             CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence            688999999999 799999964 7999999988 7999999965

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=93.30  E-value=0.11  Score=42.59  Aligned_cols=41  Identities=32%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             cHHHHHHHHHhc-CCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.+ ++||++.+ +.++++++.+.+ |||+|++++
T Consensus       169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS  211 (240)
T 1viz_A          169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGN  211 (240)
T ss_dssp             CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred             hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence            578999999999 99999996 478999999998 999999954

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=93.30  E-value=0.76  Score=39.61  Aligned_cols=128  Identities=21%  Similarity=0.239  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhcCCCEEEEecc--CHHHH----HHHHHcCCcEEEeeccCcCCCC---CccchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGIL--TAEDA----KIGVEMGASAIMVSNHGGRQLD---YVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~--~~~~a----~~l~~aG~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ...++++. .++.||++|-..  +.++.    +.+...|-+-+++.-+|.+...   ....++..+..+++..  .+||+
T Consensus       203 ~~LL~~va-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~--~lpVi  279 (350)
T 1vr6_A          203 FRLLSKAG-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPIL  279 (350)
T ss_dssp             HHHHHHHH-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEE
T ss_pred             HHHHHHHH-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhh--CCCEE
Confidence            45677776 468999999653  66554    4456688877777545544331   1223556677777765  68997


Q ss_pred             E-ec---CCCC--HHHHHHHHHhCCCEEEEcHHHHHHhh-hcChHHH-HHHHHHHHHHHHHHHHHhCC
Q psy16780        124 L-DG---GVRY--GTDVFKALALGAKMVFVGRPALWGLA-HSGKSGV-RKVLDILINEFDQALALSGC  183 (202)
Q Consensus       124 a-~G---GI~~--~~D~~kal~~GAd~V~ig~~~l~~~~-~~G~~~v-~~~i~~l~~~L~~~m~~~G~  183 (202)
                      + ++   |-+.  ..=...++++||++++|=+.+--.-+ +.|+..+ -+-++.+.++++..-...|.
T Consensus       280 ~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~al~D~~~sL~p~e~~~lv~~ir~i~~alg~  347 (350)
T 1vr6_A          280 VDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGV  347 (350)
T ss_dssp             ECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred             EeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccCCCchhhcCCHHHHHHHHHHHHHHHHHhCc
Confidence            7 22   4443  34455677899999999875432110 1332110 12345666666666666663

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=93.28  E-value=0.13  Score=45.05  Aligned_cols=89  Identities=13%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=-      .  .+.+++.+.++++.+  .+|
T Consensus       185 ~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP------~--~~~d~~~~~~l~~~~--~iP  254 (412)
T 4e4u_A          185 DRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWFEEP------V--PPGQEEAIAQVAKHT--SIP  254 (412)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC------S--CSSCHHHHHHHHHTC--SSC
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEEECC------C--ChhhHHHHHHHHhhC--CCC
Confidence            34567899999987  578888753  45555    456677888877520      0  122567778887766  899


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      |++++.+.+..++.+++..| +|.|++-
T Consensus       255 Ia~dE~~~~~~~~~~~i~~~a~d~v~~d  282 (412)
T 4e4u_A          255 IATGERLTTKYEFHKLLQAGGASILQLN  282 (412)
T ss_dssp             EEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred             EEecCccCCHHHHHHHHHcCCCCEEEeC
Confidence            99999999999999999987 7998874

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=93.25  E-value=0.99  Score=37.54  Aligned_cols=96  Identities=20%  Similarity=0.229  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhcCCCEEEEecc--CHHHH----HHHHHcCCcEEEeeccCcCCC---CCccchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGIL--TAEDA----KIGVEMGASAIMVSNHGGRQL---DYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~--~~~~a----~~l~~aG~d~I~v~~~gg~~~---~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ...++++.+ ++.||++|-..  ++++.    ..+...|-+-+++--+|.+..   .....++..+..+++..  .+||+
T Consensus       135 ~~ll~~~a~-~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~--~lpVi  211 (276)
T 1vs1_A          135 FPLLREVGR-SGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT--HLPVI  211 (276)
T ss_dssp             HHHHHHHHH-HTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB--SSCEE
T ss_pred             HHHHHHHHc-cCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh--CCCEE
Confidence            446666663 58999999753  66554    345567876566544344332   12234566677777765  68987


Q ss_pred             Ee-c---CCCC--HHHHHHHHHhCCCEEEEcHHH
Q psy16780        124 LD-G---GVRY--GTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       124 a~-G---GI~~--~~D~~kal~~GAd~V~ig~~~  151 (202)
                      ++ +   |.++  ..=...++++||++++|=+.+
T Consensus       212 ~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~  245 (276)
T 1vs1_A          212 VDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP  245 (276)
T ss_dssp             ECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             EeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence            62 2   5443  344556778999999998765

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=93.22  E-value=0.18  Score=44.99  Aligned_cols=85  Identities=15%  Similarity=0.079  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhc--CCCEEEE-eccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTIT--KLPIVLK-GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~--~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+...++.+..  +++++.- ++.++++++.+.++ +|++.|+..-=+    .......++++..   +++.|+   |++
T Consensus       195 l~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr----~~d~~~~~~~l~~---~~~KIC---Git  263 (452)
T 1pii_A          195 LNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMA----HDDLHAAVRRVLL---GENKVC---GLT  263 (452)
T ss_dssp             THHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHT----CSCHHHHHHHHHH---CSCEEC---CCC
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcC----CcCHHHHHHHHHH---Hhcccc---CCC
Confidence            44555555554  4455443 23789999999999 999999542101    1112234555432   355554   699


Q ss_pred             CHHHHHHHHHhCCCEEEEc
Q psy16780        130 YGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig  148 (202)
                      +.+|+..+..+|||++++=
T Consensus       264 ~~eda~~a~~~Gad~iGfI  282 (452)
T 1pii_A          264 RGQDAKAAYDAGAIYGGLI  282 (452)
T ss_dssp             SHHHHHHHHHHTCSEEEEE
T ss_pred             cHHHHHHHHhcCCCEEEee
Confidence            9999999999999998864

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=93.20  E-value=0.19  Score=43.89  Aligned_cols=90  Identities=11%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++.+|+.+  ++++.+..-  .+.+++    +.+.+.|++.|.=-        ..+.+++.+.++++.+  ++|
T Consensus       194 ~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iP  263 (410)
T 2qq6_A          194 EAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEEP--------TPPENLDALAEVRRST--STP  263 (410)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHTTC--SSC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEECC--------CChhhHHHHHHHHhhC--CCC
Confidence            44567899999886  578888753  455544    55667788876520        0123566777777665  799


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      |++++.+.+..++.+++..| +|.|++--
T Consensus       264 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~  292 (410)
T 2qq6_A          264 ICAGENVYTRFDFRELFAKRAVDYVMPDV  292 (410)
T ss_dssp             EEECTTCCSHHHHHHHHHTTCCSEECCBH
T ss_pred             EEeCCCcCCHHHHHHHHHcCCCCEEecCc
Confidence            99999999999999999987 89998843

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=93.19  E-value=1.1  Score=35.47  Aligned_cols=86  Identities=19%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhc-CCCEE--EEeccCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEE-ec
Q psy16780         53 WSDVTWLKTIT-KLPIV--LKGILTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYL-DG  126 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~--vK~~~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia-~G  126 (202)
                      .+.|+++|+.+ +.|++  +|....+ ..++.+.++|+|+++++..++      ..+.. .+..+++ .  .++.+. .=
T Consensus        47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~------~~~~~~~~~~~~~-~--g~~~~~d~l  117 (218)
T 3jr2_A           47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH------IATIAACKKVADE-L--NGEIQIEIY  117 (218)
T ss_dssp             THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC------HHHHHHHHHHHHH-H--TCEEEEECC
T ss_pred             HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC------HHHHHHHHHHHHH-h--CCccceeee
Confidence            56899999884 55654  5655344 357889999999999965322      11222 2333333 3  344443 33


Q ss_pred             CCCCHHHHHHHHHhCCCEEEE
Q psy16780        127 GVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~i  147 (202)
                      |+.|++++.++...|+|.+.+
T Consensus       118 ~~~T~~~~~~~~~~g~d~v~~  138 (218)
T 3jr2_A          118 GNWTMQDAKAWVDLGITQAIY  138 (218)
T ss_dssp             SSCCHHHHHHHHHTTCCEEEE
T ss_pred             ecCCHHHHHHHHHcCccceee
Confidence            457888999888889997765

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=93.18  E-value=0.41  Score=40.93  Aligned_cols=90  Identities=16%  Similarity=0.160  Sum_probs=63.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      .|+...+.++++|+.+  ++++.+-..  .+   .+.++.+.+.|++.|.=   +   .  .+.+++.+.++++.+  ++
T Consensus       165 ~~~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE~---P---~--~~~~~~~~~~l~~~~--~i  234 (368)
T 1sjd_A          165 EPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQ---P---L--EEEDVLGHAELARRI--QT  234 (368)
T ss_dssp             BTTBSHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHTTGGGCCSEEEC---C---S--CTTCHHHHHHHHTTC--SS
T ss_pred             CchhHHHHHHHHHHhcCCCceEEEeccCCCCHHHHHHHHHHHhcCCCeEeC---C---C--ChhhHHHHHHHHHhC--CC
Confidence            3566788899998876  567766532  23   33444455677776641   0   0  123566677776655  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEE
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFV  147 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~i  147 (202)
                      ||++++.+.+..++.+++..| +|.|++
T Consensus       235 pIa~dE~~~~~~~~~~~i~~~~~d~v~i  262 (368)
T 1sjd_A          235 PICLDESIVSARAAADAIKLGAVQIVNI  262 (368)
T ss_dssp             CEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             CEEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence            999999999999999999987 799988

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=93.11  E-value=0.77  Score=40.04  Aligned_cols=95  Identities=23%  Similarity=0.218  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCC---ccchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDY---VPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ++.++++. .++.||++|-.  .++++.    +.+.+.|.+-|++.-.|.+....   ...++..+..+++..  .+||+
T Consensus       239 ~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~--~lpV~  315 (385)
T 3nvt_A          239 FELLKAAG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET--HLPVM  315 (385)
T ss_dssp             HHHHHHHH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEE
T ss_pred             HHHHHHHH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc--CCCEE
Confidence            45666665 46899999965  466554    45567788767665444333222   123566777777666  78997


Q ss_pred             Ee----cCCCCHH--HHHHHHHhCCCEEEEcHH
Q psy16780        124 LD----GGVRYGT--DVFKALALGAKMVFVGRP  150 (202)
Q Consensus       124 a~----GGI~~~~--D~~kal~~GAd~V~ig~~  150 (202)
                      .+    +|-+...  =...|+++||++++|=..
T Consensus       316 ~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H  348 (385)
T 3nvt_A          316 VDVTHSTGRKDLLLPCAKAALAIEADGVMAEVH  348 (385)
T ss_dssp             EEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBC
T ss_pred             EcCCCCCCccchHHHHHHHHHHhCCCEEEEEec
Confidence            75    3444432  245678899999988664

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=93.02  E-value=0.16  Score=44.80  Aligned_cols=89  Identities=15%  Similarity=-0.011  Sum_probs=66.2

Q ss_pred             ccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         51 INWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        51 ~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ...+.++++|+.+  ++++.+...  .+.+++    +.+.+.|++.|.=-      .  .+.+++.+.++++.+  .+||
T Consensus       207 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEqP------~--~~~d~~~~~~l~~~~--~iPI  276 (422)
T 3tji_A          207 NTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIEDI------L--PPQQSAWLEQVRQQS--CVPL  276 (422)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC------S--CGGGGGGHHHHHHHC--CCCE
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEECC------C--ChhhHHHHHHHHhhC--CCCE
Confidence            3467899999986  688988754  455554    55667788777510      0  122456677887776  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++++.+.+..|+.+++..| +|.|++--
T Consensus       277 a~dE~~~~~~~~~~ll~~ga~d~v~~k~  304 (422)
T 3tji_A          277 ALGELFNNPAEWHDLIVNRRIDFIRCHV  304 (422)
T ss_dssp             EECTTCCSGGGTHHHHHTTCCSEECCCG
T ss_pred             EEeCCcCCHHHHHHHHhcCCCCEEecCc
Confidence            9999999999999999987 89998754

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=93.01  E-value=0.31  Score=42.34  Aligned_cols=93  Identities=12%  Similarity=0.133  Sum_probs=65.8

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+++++    +.+.+.|++.|.=   +     ..+.+++.+.++++..  .
T Consensus       201 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--~  270 (390)
T 3ugv_A          201 DPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIEE---P-----VVYDNFDGYAQLRHDL--K  270 (390)
T ss_dssp             SHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC---C-----SCTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC---C-----CCcccHHHHHHHHHhc--C
Confidence            3445567888888876  577887743  455443    4555667766641   0     0122566778887776  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +||+++..+.+..|+.+++..| +|.|++--.
T Consensus       271 iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~  302 (390)
T 3ugv_A          271 TPLMIGENFYGPREMHQALQAGACDLVMPDFM  302 (390)
T ss_dssp             SCEEECTTCCSHHHHHHHHHTTCCSEECCBHH
T ss_pred             CCEEeCCCcCCHHHHHHHHHcCCCCEEEeCcc
Confidence            9999999999999999999987 799987654

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=92.97  E-value=0.11  Score=42.50  Aligned_cols=41  Identities=29%  Similarity=0.252  Sum_probs=36.9

Q ss_pred             cHHHHHHHHHhc-CCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.+ ++|+++.+ +.++++++.+.+ |||+|++++
T Consensus       177 ~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS  219 (234)
T 2f6u_A          177 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN  219 (234)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred             hHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence            578999999999 99999996 478999999999 999999954

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=92.94  E-value=0.32  Score=41.89  Aligned_cols=91  Identities=11%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.+++    +.+.+.|++.|.=   +   .  .+.+++.+.++++..  .
T Consensus       179 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq---P---~--~~~d~~~~~~l~~~~--~  248 (372)
T 3tj4_A          179 DPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFEE---P---L--WYDDVTSHARLARNT--S  248 (372)
T ss_dssp             SHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEES---C---S--CTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEEC---C---C--CchhHHHHHHHHhhc--C
Confidence            3444567888888886  577877743  455554    3344555555531   0   0  122566777787776  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      +||+++..+.+..|+.+++..| +|.|++-
T Consensus       249 iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k  278 (372)
T 3tj4_A          249 IPIALGEQLYTVDAFRSFIDAGAVAYVQPD  278 (372)
T ss_dssp             SCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             CCEEeCCCccCHHHHHHHHHcCCCCEEEeC
Confidence            9999999999999999999987 7898874

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=92.90  E-value=0.58  Score=39.82  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE---ecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL---DGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia---~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.++.+.++|||.|.+-+         .++.+.+.++.+.+  ++|+.+   .+|-...-+..+.-++|...|.++...+
T Consensus       193 ~Ra~Ay~eAGAd~i~~e~---------~~~~e~~~~i~~~l--~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~  261 (318)
T 1zlp_A          193 RRANLYKEAGADATFVEA---------PANVDELKEVSAKT--KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAV  261 (318)
T ss_dssp             HHHHHHHHTTCSEEEECC---------CCSHHHHHHHHHHS--CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHH
T ss_pred             HHHHHHHHcCCCEEEEcC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence            456788999999999843         35667788888888  699854   3432222335566678999999999877


Q ss_pred             HH
Q psy16780        153 WG  154 (202)
Q Consensus       153 ~~  154 (202)
                      ++
T Consensus       262 ra  263 (318)
T 1zlp_A          262 YA  263 (318)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=92.86  E-value=0.9  Score=39.52  Aligned_cols=93  Identities=10%  Similarity=0.003  Sum_probs=68.0

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      +++...+.++++|+.+  ++++.+..-  .+   .+.++.+.+.|++.|.=   +     ..+.+++.+.++++..  .+
T Consensus       187 ~~~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~~~~~~~l~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--~i  256 (400)
T 3mwc_A          187 KPGWDVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHEQ---P-----LHYEALLDLKELGERI--ET  256 (400)
T ss_dssp             BTTBSHHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHHHGGGCCSCEES---C-----SCTTCHHHHHHHHHHS--SS
T ss_pred             CcchHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEeC---C-----CChhhHHHHHHHHhhC--CC
Confidence            3555678899999886  678888743  22   45566677777777641   0     0122566777887776  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      ||+++..+.+..|+.+++..| +|.|++--.
T Consensus       257 PIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~  287 (400)
T 3mwc_A          257 PICLDESLISSRVAEFVAKLGISNIWNIKIQ  287 (400)
T ss_dssp             CEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred             CEEEeCCcCCHHHHHHHHhcCCCCEEEEcch
Confidence            999999999999999999987 799988653

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=92.82  E-value=0.35  Score=41.56  Aligned_cols=92  Identities=9%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=   +     ..+.+++.+.++++..  .
T Consensus       166 ~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq---P-----~~~~~~~~~~~l~~~~--~  235 (368)
T 3q45_A          166 SKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCEE---P-----VSRNLYTALPKIRQAC--R  235 (368)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEEC---C-----BCGGGGGGHHHHHHTC--S
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEEC---C-----CChhHHHHHHHHHhhC--C
Confidence            4555667888888886  577777643  45544    45566677776641   0     0122455677777765  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||++++.+.+..|+.+++..| +|.|++--
T Consensus       236 iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~  266 (368)
T 3q45_A          236 IPIMADESCCNSFDAERLIQIQACDSFNLKL  266 (368)
T ss_dssp             SCEEESTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred             CCEEEcCCcCCHHHHHHHHHcCCCCeEEech
Confidence            9999999999999999999986 79998764

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=92.76  E-value=0.48  Score=40.83  Aligned_cols=91  Identities=12%  Similarity=0.033  Sum_probs=63.8

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cC----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LT----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++++|+.+  ++++.+...  .+    .+.++.+.+.|++.|.=   +     ..+.+++.+.++++..  .+|
T Consensus       175 ~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--~ip  244 (377)
T 3my9_A          175 AEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFIEQ---P-----VPRRHLDAMAGFAAAL--DTP  244 (377)
T ss_dssp             HHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCEEC---C-----SCTTCHHHHHHHHHHC--SSC
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEEEC---C-----CCccCHHHHHHHHHhC--CCC
Confidence            34556788888775  567777643  22    24456666777776641   0     0122466777887776  799


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      |+++..+.+..|+.+++..| +|.|++--.
T Consensus       245 Ia~dE~~~~~~~~~~~i~~~~~d~v~~k~~  274 (377)
T 3my9_A          245 ILADESCFDAVDLMEVVRRQAADAISVKIM  274 (377)
T ss_dssp             EEESTTCSSHHHHHHHHHHTCCSEEECCHH
T ss_pred             EEECCccCCHHHHHHHHHcCCCCEEEeccc
Confidence            99999999999999999987 899987643

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=92.70  E-value=0.14  Score=41.82  Aligned_cols=41  Identities=17%  Similarity=0.115  Sum_probs=36.6

Q ss_pred             cHHHHHHHHHhc-CCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.+ +.|+++... .+++.++.+.+ |+|+|+|++
T Consensus       173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGS  215 (235)
T 3w01_A          173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGD  215 (235)
T ss_dssp             CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECT
T ss_pred             CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECC
Confidence            678999999998 899999964 79999999887 999999965

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=92.68  E-value=1.6  Score=36.55  Aligned_cols=129  Identities=17%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCCEEEEecc--CH----HHHHHHHHcCCcEEEeeccCcCC-CCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         53 WSDVTWLKTITKLPIVLKGIL--TA----EDAKIGVEMGASAIMVSNHGGRQ-LDYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~--~~----~~a~~l~~aG~d~I~v~~~gg~~-~~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      .+.++++. .++.||++|-..  ++    ..++.+.+.|-+-|++.-.|-+- ...-..++..+..+++.. ..+||+.+
T Consensus       124 ~~LLr~va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~-~~~pV~~D  201 (285)
T 3sz8_A          124 TDLVVAIA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETT-GGCPVIFD  201 (285)
T ss_dssp             HHHHHHHH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHT-TSCCEEEE
T ss_pred             HHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhC-CCCCEEEe
Confidence            45677766 469999999753  54    33566778898878775443211 111123566777777665 24899985


Q ss_pred             ---------------cCCCCH--HHHHHHHHhCCCEEEEcHHHHHHh-hhcChHHH-HHHHHHHHHHHHHHHHHhCC
Q psy16780        126 ---------------GGVRYG--TDVFKALALGAKMVFVGRPALWGL-AHSGKSGV-RKVLDILINEFDQALALSGC  183 (202)
Q Consensus       126 ---------------GGI~~~--~D~~kal~~GAd~V~ig~~~l~~~-~~~G~~~v-~~~i~~l~~~L~~~m~~~G~  183 (202)
                                     ||-|..  .-...|+++|||+++|=..+--.- .+.++..+ -+-++.+.++++.+-...|.
T Consensus       202 ~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~~i~~~lg~  278 (285)
T 3sz8_A          202 VTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKR  278 (285)
T ss_dssp             TTTTCC---------------HHHHHHHHHHHCCSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHHHHHHHHTT
T ss_pred             CCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccChhccCCchhhccCHHHHHHHHHHHHHHHHHhCC
Confidence                           232221  234567789999888866433110 12332100 02234555566666666664

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=92.57  E-value=0.14  Score=41.53  Aligned_cols=70  Identities=19%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             cCHHHHHHHHHcCCcEEEeecc---CcCCCCCccchHHHHHHHH---HHhCCCcEEEE-----ecCCCCH--------HH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNH---GGRQLDYVPASIEALPEIA---KAVGHKVDVYL-----DGGVRYG--------TD  133 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~---gg~~~~~~~~~~~~l~~i~---~~~~~~ipiia-----~GGI~~~--------~D  133 (202)
                      .+.+++..+.+.|||.|.+...   ||+     .|+...+..++   +.+  ++||.+     .|++...        +|
T Consensus         9 ~s~~~a~~A~~~GAdRIELc~~L~~GGl-----TPS~g~i~~~~~~~~~~--~ipV~vMIRPR~GdF~Ys~~E~~~M~~D   81 (224)
T 2bdq_A            9 ENLTDLTRLDKAIISRVELCDNLAVGGT-----TPSYGVIKEANQYLHEK--GISVAVMIRPRGGNFVYNDLELRIMEED   81 (224)
T ss_dssp             ETTTTGGGCCTTTCCEEEEEBCGGGTCB-----CCCHHHHHHHHHHHHHT--TCEEEEECCSSSSCSCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEcCCcccCCc-----CCCHHHHHHHHHhhhhc--CCceEEEECCCCCCCcCCHHHHHHHHHH
Confidence            5788899999999999999763   332     45666677766   666  789887     4555433        36


Q ss_pred             HHHHHHhCCCEEEEcH
Q psy16780        134 VFKALALGAKMVFVGR  149 (202)
Q Consensus       134 ~~kal~~GAd~V~ig~  149 (202)
                      +..+..+|||+|.+|-
T Consensus        82 i~~~~~~GadGvV~G~   97 (224)
T 2bdq_A           82 ILRAVELESDALVLGI   97 (224)
T ss_dssp             HHHHHHTTCSEEEECC
T ss_pred             HHHHHHcCCCEEEEee
Confidence            6667779999999985

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=92.55  E-value=0.33  Score=42.05  Aligned_cols=92  Identities=9%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=   +     ..+.+++.+.++++..  .
T Consensus       195 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe---P-----~~~~d~~~~~~l~~~~--~  264 (383)
T 3toy_A          195 DLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEE---P-----VPQENLSGHAAVRERS--E  264 (383)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC---C-----SCTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC---C-----CCcchHHHHHHHHhhc--C
Confidence            3445566788888875  567777643  45444    35556677766641   0     0122566778887776  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||+++..+.+..|+.+++..| +|.|++--
T Consensus       265 iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~  295 (383)
T 3toy_A          265 IPIQAGENWWFPRGFAEAIAAGASDFIMPDL  295 (383)
T ss_dssp             SCEEECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred             CCEEeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence            9999999999999999999987 78888753

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=92.54  E-value=0.75  Score=40.16  Aligned_cols=87  Identities=10%  Similarity=0.011  Sum_probs=64.7

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      +.--++.+.+.++..++|++- .+++.+.+..+.+.|+|.+.|..+.       ..++..|+.+++   ...|||.+-|.
T Consensus        99 ~~e~~~~L~~~~~~~Gi~~~s-tpfD~~svd~l~~~~vd~~KIgS~~-------~~N~pLL~~va~---~gKPViLStGm  167 (385)
T 1vli_A           99 PAEWILPLLDYCREKQVIFLS-TVCDEGSADLLQSTSPSAFKIASYE-------INHLPLLKYVAR---LNRPMIFSTAG  167 (385)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEC-BCCSHHHHHHHHTTCCSCEEECGGG-------TTCHHHHHHHHT---TCSCEEEECTT
T ss_pred             CHHHHHHHHHHHHHcCCcEEE-ccCCHHHHHHHHhcCCCEEEECccc-------ccCHHHHHHHHh---cCCeEEEECCC
Confidence            333456777777788988774 5689999999999999999996532       235566666643   37999999999


Q ss_pred             CCHHHHHHHHH----hCC-CEEE
Q psy16780        129 RYGTDVFKALA----LGA-KMVF  146 (202)
Q Consensus       129 ~~~~D~~kal~----~GA-d~V~  146 (202)
                      .|.+++..|+.    .|. +.+.
T Consensus       168 aTl~Ei~~Ave~i~~~Gn~~iiL  190 (385)
T 1vli_A          168 AEISDVHEAWRTIRAEGNNQIAI  190 (385)
T ss_dssp             CCHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCcEEE
Confidence            99999888775    376 4444

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=92.54  E-value=0.14  Score=42.57  Aligned_cols=42  Identities=17%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.++.||++... .++++++.+...|+|+++|+.
T Consensus       196 ~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS  238 (271)
T 3nav_A          196 VHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGS  238 (271)
T ss_dssp             HHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence            467899999999999999854 689999989999999999964

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=92.50  E-value=0.23  Score=40.92  Aligned_cols=42  Identities=17%  Similarity=0.098  Sum_probs=37.1

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.+++||.+... .+++.++.+..+|+|+++|++
T Consensus       193 ~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS  235 (268)
T 1qop_A          193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS  235 (268)
T ss_dssp             CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             HHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence            478999999988999999876 459999999999999999965

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=92.49  E-value=0.84  Score=39.34  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=60.4

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV  134 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~  134 (202)
                      .+.+.++..++|++- .+++.+.+..+.+.|+|.+.|..+.       ..++..|+.+.+   ...|||.+-|..|-+++
T Consensus        82 ~L~~~~~~~Gi~~~s-t~fD~~svd~l~~~~v~~~KI~S~~-------~~N~pLL~~va~---~gKPviLstGmstl~Ei  150 (350)
T 3g8r_A           82 KLVAEMKANGFKAIC-TPFDEESVDLIEAHGIEIIKIASCS-------FTDWPLLERIAR---SDKPVVASTAGARREDI  150 (350)
T ss_dssp             HHHHHHHHTTCEEEE-EECSHHHHHHHHHTTCCEEEECSSS-------TTCHHHHHHHHT---SCSCEEEECTTCCHHHH
T ss_pred             HHHHHHHHcCCcEEe-ccCCHHHHHHHHHcCCCEEEECccc-------ccCHHHHHHHHh---hCCcEEEECCCCCHHHH
Confidence            445555566888774 6789999999999999999996532       235566676643   37899999999999999


Q ss_pred             HHHHH----hCCCEEE
Q psy16780        135 FKALA----LGAKMVF  146 (202)
Q Consensus       135 ~kal~----~GAd~V~  146 (202)
                      ..++.    .|.+.+.
T Consensus       151 ~~Ave~i~~~g~~viL  166 (350)
T 3g8r_A          151 DKVVSFMLHRGKDLTI  166 (350)
T ss_dssp             HHHHHHHHTTTCCEEE
T ss_pred             HHHHHHHHHcCCCEEE
Confidence            88875    3666444

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=92.46  E-value=0.69  Score=39.85  Aligned_cols=84  Identities=10%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      ++.+.+.++..++|++- .+++.+.+..+.+.|+|.+.|..+.       ..++..|+.+.+   ...|||.+-|..|-+
T Consensus        93 ~~~L~~~~~~~Gi~~~s-t~~d~~svd~l~~~~v~~~KI~S~~-------~~n~~LL~~va~---~gkPviLstGmat~~  161 (349)
T 2wqp_A           93 EIKLKEYVESKGMIFIS-TLFSRAAALRLQRMDIPAYKIGSGE-------CNNYPLIKLVAS---FGKPIILSTGMNSIE  161 (349)
T ss_dssp             HHHHHHHHHHTTCEEEE-EECSHHHHHHHHHHTCSCEEECGGG-------TTCHHHHHHHHT---TCSCEEEECTTCCHH
T ss_pred             HHHHHHHHHHhCCeEEE-eeCCHHHHHHHHhcCCCEEEECccc-------ccCHHHHHHHHh---cCCeEEEECCCCCHH
Confidence            34566666667888774 6789999999999999999996532       235566666643   379999999999999


Q ss_pred             HHHHHHH----hCCCEEEE
Q psy16780        133 DVFKALA----LGAKMVFV  147 (202)
Q Consensus       133 D~~kal~----~GAd~V~i  147 (202)
                      ++..|+.    .|.+.+.+
T Consensus       162 Ei~~Ave~i~~~G~~iiLl  180 (349)
T 2wqp_A          162 SIKKSVEIIREAGVPYALL  180 (349)
T ss_dssp             HHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEE
Confidence            9887775    47766554

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=92.44  E-value=0.6  Score=38.55  Aligned_cols=71  Identities=18%  Similarity=0.165  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      ++.......++||++|.|-.-  ..+.+  .+.+.|..+++.+  ++||+---=|-++-++.++.++|||+|.+=-+
T Consensus        65 dp~~iA~~~~~GA~aiSVLTd--~~~F~--Gs~~~L~~vr~~v--~lPvLrKDFiid~yQI~eAr~~GADaILLI~a  135 (258)
T 4a29_A           65 DPIEYAKFMERYAVGLSITTE--EKYFN--GSYETLRKIASSV--SIPILMSDFIVKESQIDDAYNLGADTVLLIVK  135 (258)
T ss_dssp             CHHHHHHHHTTTCSEEEEECC--STTTC--CCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHHHTCSEEEEEGG
T ss_pred             CHHHHHHHHhCCCeEEEEeCC--CCCCC--CCHHHHHHHHHhc--CCCEeeccccccHHHHHHHHHcCCCeeehHHh
Confidence            454444567899999988442  11111  2456677777766  89999988899999999999999999976433

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=92.43  E-value=0.23  Score=43.25  Aligned_cols=91  Identities=12%  Similarity=-0.030  Sum_probs=66.4

Q ss_pred             ccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         49 ETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ++...+.++++|+.+  ++++.+-..  .+.+++    +.+.+.|++.|.---        .+.+.+.+.++++..  .+
T Consensus       193 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~--------~~~~~~~~~~l~~~~--~i  262 (400)
T 4dxk_A          193 LKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHEDPI--------KMDSLSSLTRYAAVS--PA  262 (400)
T ss_dssp             HHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCSEEECCB--------CTTSGGGHHHHHHHC--SS
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCEEEcCC--------CcccHHHHHHHHHhC--CC
Confidence            344567899999987  578888743  466554    455667887776210        112455677777776  89


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ||+++..+.+..++.+++..| +|.|++--
T Consensus       263 PIa~dE~~~~~~~~~~~l~~~a~d~v~~d~  292 (400)
T 4dxk_A          263 PISASETLGSRWAFRDLLETGAAGVVMLDI  292 (400)
T ss_dssp             CEEECTTCCHHHHHHHHHHTTCCCEEEECT
T ss_pred             CEEecCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence            999999999999999999997 79998853

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=92.42  E-value=2.5  Score=34.13  Aligned_cols=48  Identities=13%  Similarity=0.111  Sum_probs=35.3

Q ss_pred             hccCccccHHHHHHHH---HhcCCCEEEEec-------cC-------HHHHHHHHHcCCcEEEee
Q psy16780         45 SQLDETINWSDVTWLK---TITKLPIVLKGI-------LT-------AEDAKIGVEMGASAIMVS   92 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~---~~~~~Pv~vK~~-------~~-------~~~a~~l~~aG~d~I~v~   92 (202)
                      .+|-...++..++.++   +.+++||.+=++       .+       .++++.+.++|+|+|+++
T Consensus        32 ~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G   96 (224)
T 2bdq_A           32 AVGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLG   96 (224)
T ss_dssp             GGTCBCCCHHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             ccCCcCCCHHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence            4444455567778887   888999987554       12       256788999999999986

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=92.38  E-value=0.78  Score=39.30  Aligned_cols=90  Identities=20%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             ccccHHHHHHHHHhc-CCCEEEEec--cC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         49 ETINWSDVTWLKTIT-KLPIVLKGI--LT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~-~~Pv~vK~~--~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      |+...+.++++|+.+ ++++.+...  .+   .+.++.+.+.|++.|.=      ..  .+.+++.+.++++..  ++||
T Consensus       173 ~~~d~~~v~avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iEq------P~--~~~d~~~~~~l~~~~--~ipI  242 (375)
T 1r0m_A          173 PGWDVQPVRATREAFPDIRLTVDANSAYTLADAGRLRQLDEYDLTYIEQ------PL--AWDDLVDHAELARRI--RTPL  242 (375)
T ss_dssp             TTBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHTTGGGCCSCEEC------CS--CTTCSHHHHHHHHHC--SSCE
T ss_pred             hHHHHHHHHHHHHHcCCCeEEEeCCCCCCHHHHHHHHHHHhCCCcEEEC------CC--CcccHHHHHHHHHhC--CCCE
Confidence            455677888888876 567777632  23   23334445566665541      00  123556677777776  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      ++++.+.+..|+.+++..| +|.|++-
T Consensus       243 a~dE~~~~~~~~~~~i~~~~~d~v~ik  269 (375)
T 1r0m_A          243 CLDESVASASDARKALALGAGGVINLK  269 (375)
T ss_dssp             EESTTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred             EecCccCCHHHHHHHHHhCCCCEEEEC
Confidence            9999999999999999987 8999883

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=92.31  E-value=1.6  Score=37.78  Aligned_cols=41  Identities=22%  Similarity=0.229  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +++.+..+++.+  ++||+.- |+.+.+++.++..+|||+|.++
T Consensus       213 ~~~~i~~i~~~~--~~Pv~vk-gv~t~e~a~~a~~aGad~I~vs  253 (380)
T 1p4c_A          213 NWEALRWLRDLW--PHKLLVK-GLLSAEDADRCIAEGADGVILS  253 (380)
T ss_dssp             CHHHHHHHHHHC--CSEEEEE-EECCHHHHHHHHHTTCSEEEEC
T ss_pred             cHHHHHHHHHhc--CCCEEEE-ecCcHHHHHHHHHcCCCEEEEc
Confidence            455677777776  7999875 5899999999999999999994

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=92.12  E-value=0.95  Score=38.62  Aligned_cols=91  Identities=12%  Similarity=0.113  Sum_probs=62.2

Q ss_pred             ccccHHHHHHHHHhc-CCCEEEEec--cC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         49 ETINWSDVTWLKTIT-KLPIVLKGI--LT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~-~~Pv~vK~~--~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      |+...+.++++|+.+ ++++.+-..  .+   .+.++.+.+.|++.|.=   +   .  .+.+++.+.++++..  ++||
T Consensus       166 ~~~d~~~v~avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iEq---P---~--~~~d~~~~~~l~~~~--~ipI  235 (369)
T 2zc8_A          166 PGWDYEVLKAVREAFPEATLTADANSAYSLANLAQLKRLDELRLDYIEQ---P---L--AYDDLLDHAKLQREL--STPI  235 (369)
T ss_dssp             TTBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHGGGGGCCSCEEC---C---S--CTTCSHHHHHHHHHC--SSCE
T ss_pred             hhHHHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHhCCCcEEEC---C---C--CcccHHHHHHHHhhC--CCCE
Confidence            455677788888776 567777532  23   23344445566665541   0   0  122456677777766  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +++..+.+..|+.+++..| +|.|++--
T Consensus       236 a~dE~~~~~~~~~~~i~~~~~d~v~ik~  263 (369)
T 2zc8_A          236 CLDESLTGAEKARKAIELGAGRVFNVKP  263 (369)
T ss_dssp             EESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred             EEcCccCCHHHHHHHHHhCCCCEEEEch
Confidence            9999999999999999988 89999843

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=92.10  E-value=0.52  Score=38.42  Aligned_cols=78  Identities=13%  Similarity=-0.006  Sum_probs=49.1

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV  134 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~  134 (202)
                      .+..+.+..++|++|-  -..   ..+.+.|+|+|.+....       . +   ..++++.++....|-++  ++|.+++
T Consensus        87 ~l~~l~~~~~~~liIn--d~~---~lA~~~gAdGVHLg~~d-------l-~---~~~~r~~~~~~~~iG~S--~ht~~Ea  148 (243)
T 3o63_A           87 ILADAAHRYGALFAVN--DRA---DIARAAGADVLHLGQRD-------L-P---VNVARQILAPDTLIGRS--THDPDQV  148 (243)
T ss_dssp             HHHHHHHHTTCEEEEE--SCH---HHHHHHTCSEEEECTTS-------S-C---HHHHHHHSCTTCEEEEE--ECSHHHH
T ss_pred             HHHHHHHhhCCEEEEe--CHH---HHHHHhCCCEEEecCCc-------C-C---HHHHHHhhCCCCEEEEe--CCCHHHH
Confidence            3444445568998874  223   33667899999884321       1 1   12333434333333333  6999999


Q ss_pred             HHHHHhCCCEEEEcHH
Q psy16780        135 FKALALGAKMVFVGRP  150 (202)
Q Consensus       135 ~kal~~GAd~V~ig~~  150 (202)
                      .++...|||.|.+|..
T Consensus       149 ~~A~~~GaDyI~vgpv  164 (243)
T 3o63_A          149 AAAAAGDADYFCVGPC  164 (243)
T ss_dssp             HHHHHSSCSEEEECCS
T ss_pred             HHHhhCCCCEEEEcCc
Confidence            9999999999999863

>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}

Probab=92.08  E-value=2  Score=34.34  Aligned_cols=111  Identities=21%  Similarity=0.284  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .+.+++|.+.++.||.+=.. .+    .+.++++.+.+ +.+.+-         .|.+++.++.++......+++-++- 
T Consensus        41 ~~~~~eI~~~v~G~Vs~EV~a~d~e~mi~ea~~l~~~~-~nv~IK---------IP~T~eGl~A~~~L~~~GI~vn~Tl-  109 (212)
T 3r8r_A           41 HDRLREITDVVKGSVSAEVISLKAEEMIEEGKELAKIA-PNITVK---------IPMTSDGLKAVRALTDLGIKTNVTL-  109 (212)
T ss_dssp             HHHHHHHHHHCCSCEEEECCCSSHHHHHHHHHHHHTTC-TTEEEE---------EESSHHHHHHHHHHHHTTCCEEEEE-
T ss_pred             HHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHHHhC-CCEEEE---------eCCCHHHHHHHHHHHHCCCcEEEEE-
Confidence            57899999999899987543 22    35677777765 333331         2556666665544333357777654 


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSG  182 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G  182 (202)
                      |.|..+++.|..+||+.|.   ||+-.+...|.+++.     +..++..+....|
T Consensus       110 ifS~~Qa~~Aa~AGa~yIS---PfvgRi~d~~~dG~~-----~v~~i~~~~~~~~  156 (212)
T 3r8r_A          110 IFNANQALLAARAGATYVS---PFLGRLDDIGHNGLD-----LISEVKQIFDIHG  156 (212)
T ss_dssp             ECSHHHHHHHHHHTCSEEE---EBHHHHHHTTSCHHH-----HHHHHHHHHHHHT
T ss_pred             eCCHHHHHHHHHcCCeEEE---eccchhhhcCCChHH-----HHHHHHHHHHHcC
Confidence            8999999999999999874   333322233445542     2344444555555

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}

Probab=92.04  E-value=0.41  Score=39.78  Aligned_cols=90  Identities=16%  Similarity=0.107  Sum_probs=53.3

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL-DGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia-~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+++. +|++.+.|+.|...   .-+.+--.++.+.+..++|||+ .|+..+ .++++    +-++|||++++-.|
T Consensus        23 ~lv~~li~~-v~gl~v~GttGE~~---~Ls~~Er~~v~~~~~~rvpviaGvg~~~t-~~ai~la~~A~~~Gadavlv~~P   97 (283)
T 2pcq_A           23 ELAQALEPL-VDGLLVYGSNGEGV---HLTPEERARGLRALRPRKPFLVGLMEETL-PQAEGALLEAKAAGAMALLATPP   97 (283)
T ss_dssp             HHHHHHGGG-SSCCEETCTTTTGG---GSCHHHHHHHHHTCCCSSCCEEEECCSSH-HHHHHHHHHHHHHTCSEEEECCC
T ss_pred             HHHHHHHhh-CCEEEECCcCcCch---hcCHHHHHHHHHHHHhCCcEEEeCCCCCH-HHHHHHHHHHHhcCCCEEEecCC
Confidence            345667888 99999977655321   1122323333333323899887 444444 44433    33479999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILIN  172 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~~  172 (202)
                      +++..  ...+++.++++.+.+
T Consensus        98 ~y~~~--~~~~~l~~~f~~va~  117 (283)
T 2pcq_A           98 RYYHG--SLGAGLLRYYEALAE  117 (283)
T ss_dssp             CTTGG--GTTTHHHHHHHHHHH
T ss_pred             cCCCC--CCHHHHHHHHHHHhc
Confidence            87532  134666666666544

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=91.98  E-value=0.36  Score=42.70  Aligned_cols=89  Identities=8%  Similarity=-0.077  Sum_probs=65.5

Q ss_pred             ccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         51 INWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        51 ~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      ...+.++++|+.+  ++++.+...  .+.+++    +.+.+.|++.|.=   +   .  .+.+++.+.++++..  .+||
T Consensus       225 ~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe---P---~--~~~d~~~~~~l~~~~--~iPI  294 (440)
T 3t6c_A          225 SIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLED---P---V--APENTEWLKMLRQQS--STPI  294 (440)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEEC---S---S--CGGGGGGHHHHHHHC--CSCE
T ss_pred             HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEEC---C---C--ChhhHHHHHHHHhhc--CCCE
Confidence            3466899999987  678998854  466554    4556677777741   0   0  122456677887776  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +++..+.+..|+.+++..| +|.|++--
T Consensus       295 a~dE~~~~~~~~~~~i~~~a~d~v~~k~  322 (440)
T 3t6c_A          295 AMGELFVNVNEWKPLIDNKLIDYIRCHI  322 (440)
T ss_dssp             EECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred             EeCcccCCHHHHHHHHHcCCccceeech
Confidence            9999999999999999987 78888754

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=91.98  E-value=0.26  Score=40.19  Aligned_cols=42  Identities=19%  Similarity=0.213  Sum_probs=36.4

Q ss_pred             cHHHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.+++||++.+.. +++.+..+.++|+|++++++
T Consensus       189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGS  231 (262)
T 1rd5_A          189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS  231 (262)
T ss_dssp             HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred             HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEECh
Confidence            4568899999889999998765 59999999999999999965

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=91.98  E-value=2.1  Score=35.66  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=62.7

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---CC-CCccchHHH-H---HHHHHHhCCCc
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---QL-DYVPASIEA-L---PEIAKAVGHKV  120 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~~-~~~~~~~~~-l---~~i~~~~~~~i  120 (202)
                      +..+...+++.++. +-|+.+=...+.-.|+.+.++|+|.|.++...+.   .. +..+.+.+- +   +.+++.. ++.
T Consensus        14 ~~~t~~~lr~~~~~-g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~-~~~   91 (275)
T 3vav_A           14 PAVTVPKLQAMREA-GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQ-PRA   91 (275)
T ss_dssp             CCCCHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTC-CSS
T ss_pred             CCcCHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcC-CCC
Confidence            34455566666554 5688776678999999999999999955422211   11 333445543 3   3343333 358


Q ss_pred             EEEEec---CCCCHHHHH----HHHHhCCCEEEEc
Q psy16780        121 DVYLDG---GVRYGTDVF----KALALGAKMVFVG  148 (202)
Q Consensus       121 piia~G---GI~~~~D~~----kal~~GAd~V~ig  148 (202)
                      ||+++-   |-.++++++    +.+..||++|-+=
T Consensus        92 ~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklE  126 (275)
T 3vav_A           92 LIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFE  126 (275)
T ss_dssp             EEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence            999964   456788875    4566799999873

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=91.90  E-value=0.33  Score=43.67  Aligned_cols=70  Identities=23%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+.++.+.++|++.+.+....|..    ...++.+..+++..++++|++ .|++.+.+++.++..+|||++.+|.
T Consensus       244 ~e~~~~l~e~gv~~l~Vd~~~g~~----~~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~Vg~  313 (503)
T 1me8_A          244 RERVPALVEAGADVLCIDSSDGFS----EWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIGI  313 (503)
T ss_dssp             HHHHHHHHHHTCSEEEECCSCCCS----HHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHHHHHhhhccceEEecccCcc----cchhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEEecc
Confidence            455788889999999885543321    113445666666552127887 4889999999999999999998764

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=91.74  E-value=0.2  Score=41.58  Aligned_cols=42  Identities=17%  Similarity=0.130  Sum_probs=37.1

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.+++||.+... .++++++.+..+|+|+++|++
T Consensus       194 ~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS  236 (267)
T 3vnd_A          194 IENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS  236 (267)
T ss_dssp             HHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence            567899999999999999865 579999999999999999964

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=91.72  E-value=0.25  Score=42.33  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|++.|.=   +   .  .+.+++.+.++++..  .
T Consensus       166 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq---P---~--~~~d~~~~~~l~~~~--~  235 (356)
T 3ro6_B          166 DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIEQ---P---F--PAGRTDWLRALPKAI--R  235 (356)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCEEC---C---S--CTTCHHHHHTSCHHH--H
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEC---C---C--CCCcHHHHHHHHhcC--C
Confidence            4555667888888876  577887743  34444    45566777777741   0   0  112456666666655  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC--CCEEEEcHHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG--AKMVFVGRPA  151 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G--Ad~V~ig~~~  151 (202)
                      +||++++.+.+..|+.+++..|  +|.|++--..
T Consensus       236 iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~  269 (356)
T 3ro6_B          236 RRIAADESLLGPADAFALAAPPAACGIFNIKLMK  269 (356)
T ss_dssp             HTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHH
T ss_pred             CCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccc
Confidence            9999999999999999999875  8999987543

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=91.72  E-value=1  Score=38.86  Aligned_cols=82  Identities=23%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc-C--c-C----------------------------CC---C--
Q psy16780         64 KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH-G--G-R----------------------------QL---D--  100 (202)
Q Consensus        64 ~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~-g--g-~----------------------------~~---~--  100 (202)
                      +.|+++-+-      .+.+.++++.++|+++++++-. +  | +                            .+   .  
T Consensus       132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~  211 (368)
T 2nli_A          132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA  211 (368)
T ss_dssp             TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred             CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence            678887652      2346678889999999987642 1  1 0                            00   0  


Q ss_pred             -CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        101 -YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       101 -~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                       ....+++.+..+++..  ++||+.=| +.+.+|+.++..+|||+|.+.
T Consensus       212 ~d~~~~~~~i~~lr~~~--~~PvivK~-v~~~e~a~~a~~~Gad~I~vs  257 (368)
T 2nli_A          212 SKQKISPRDIEEIAGHS--GLPVFVKG-IQHPEDADMAIKRGASGIWVS  257 (368)
T ss_dssp             BCSBCCHHHHHHHHHHS--SSCEEEEE-ECSHHHHHHHHHTTCSEEEEC
T ss_pred             cCchhhHHHHHHHHHHc--CCCEEEEc-CCCHHHHHHHHHcCCCEEEEc
Confidence             0123556677777776  78998864 789999999999999999984

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=91.70  E-value=1.6  Score=37.04  Aligned_cols=85  Identities=20%  Similarity=0.090  Sum_probs=55.9

Q ss_pred             hcCCCEEEEec--cCHHHH-HHHHHcCCcEEEeeccCcCCC-C-Cccc----hHHHHHHHHHHhCCCcEEEEe--cCCCC
Q psy16780         62 ITKLPIVLKGI--LTAEDA-KIGVEMGASAIMVSNHGGRQL-D-YVPA----SIEALPEIAKAVGHKVDVYLD--GGVRY  130 (202)
Q Consensus        62 ~~~~Pv~vK~~--~~~~~a-~~l~~aG~d~I~v~~~gg~~~-~-~~~~----~~~~l~~i~~~~~~~ipiia~--GGI~~  130 (202)
                      ..+.|+++...  .+++.. +.+..+|+|+|.+........ . .+.+    .++.+.++++.+  ++||+.-  |...+
T Consensus       114 ~~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~--~~Pv~vK~~~~~~~  191 (349)
T 1p0k_A          114 NPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVKEVGFGMS  191 (349)
T ss_dssp             CSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEEEESSCCC
T ss_pred             CCCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc--CCCEEEEecCCCCC
Confidence            35789987654  455554 445578999998864311110 0 0111    345677777766  7898885  55578


Q ss_pred             HHHHHHHHHhCCCEEEEc
Q psy16780        131 GTDVFKALALGAKMVFVG  148 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig  148 (202)
                      .+++..+..+|||+|.+.
T Consensus       192 ~~~a~~a~~~Gad~I~v~  209 (349)
T 1p0k_A          192 KASAGKLYEAGAAAVDIG  209 (349)
T ss_dssp             HHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEc
Confidence            999999999999999984

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=91.59  E-value=1.3  Score=38.07  Aligned_cols=90  Identities=12%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             HHHHHHhc-CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-CC-----------------C--------
Q psy16780         56 VTWLKTIT-KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-RQ-----------------L--------   99 (202)
Q Consensus        56 i~~i~~~~-~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~~-----------------~--------   99 (202)
                      +++|.+.. +-|.+..+-      .+.+.++++.++|+.+++++-.   .| |.                 +        
T Consensus       112 ~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~  191 (352)
T 3sgz_A          112 LEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKP  191 (352)
T ss_dssp             HHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC--------
T ss_pred             HHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccc
Confidence            44444444 357777653      2345678899999999988631   11 10                 0        


Q ss_pred             --------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        100 --------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       100 --------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                              .....+|+.+..+++..  ++||+.-| +.+.+|+.++..+|||++.+.
T Consensus       192 ~~~~~~~~~d~~~~w~~i~~lr~~~--~~PvivK~-v~~~e~A~~a~~~GaD~I~vs  245 (352)
T 3sgz_A          192 TQSVPVLFPKASFCWNDLSLLQSIT--RLPIILKG-ILTKEDAELAMKHNVQGIVVS  245 (352)
T ss_dssp             -------CCCTTCCHHHHHHHHHHC--CSCEEEEE-ECSHHHHHHHHHTTCSEEEEC
T ss_pred             cchhhhhccCCCCCHHHHHHHHHhc--CCCEEEEe-cCcHHHHHHHHHcCCCEEEEe
Confidence                    00124677888888876  78998854 689999999999999999984

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=91.56  E-value=0.78  Score=39.70  Aligned_cols=82  Identities=16%  Similarity=0.048  Sum_probs=54.2

Q ss_pred             CCCEEEEec--cCHHHHHHH-HHcCCcEEEeeccCcC---CCCC--ccchH-HHHHHHHHHhCCCcEEEEecCC---CCH
Q psy16780         64 KLPIVLKGI--LTAEDAKIG-VEMGASAIMVSNHGGR---QLDY--VPASI-EALPEIAKAVGHKVDVYLDGGV---RYG  131 (202)
Q Consensus        64 ~~Pv~vK~~--~~~~~a~~l-~~aG~d~I~v~~~gg~---~~~~--~~~~~-~~l~~i~~~~~~~ipiia~GGI---~~~  131 (202)
                      +.|++.=+.  .+.+.+.++ ...|+|++.+.-....   +..+  ...++ +.+.++++.+  ++||++-+ +   .+.
T Consensus       144 ~~~~ianig~~~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~--~~PVivK~-vg~g~s~  220 (365)
T 3sr7_A          144 HLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL--QLPFILKE-VGFGMDV  220 (365)
T ss_dssp             -CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC--CSCEEEEE-CSSCCCH
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh--CCCEEEEE-CCCCCCH
Confidence            567764332  456665554 4789999998654221   1111  11123 5677787776  79999974 6   789


Q ss_pred             HHHHHHHHhCCCEEEEc
Q psy16780        132 TDVFKALALGAKMVFVG  148 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig  148 (202)
                      +++.++..+|||+|.++
T Consensus       221 e~A~~l~~aGad~I~V~  237 (365)
T 3sr7_A          221 KTIQTAIDLGVKTVDIS  237 (365)
T ss_dssp             HHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHcCCCEEEEe
Confidence            99999999999999883

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=91.55  E-value=0.28  Score=39.02  Aligned_cols=108  Identities=13%  Similarity=0.056  Sum_probs=61.8

Q ss_pred             HHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      +.++.++.  ++|++-.... +.++. .+.+..+|++.+++. ||+.   ..-+|..+..+..   .+.|++..||+ ++
T Consensus        88 ~~~~~l~~--~~~vika~~v~~~~~l-~~~~~~~d~~LlD~~~gGtG---~~fdW~~l~~~~~---~~~p~~LAGGL-~p  157 (203)
T 1v5x_A           88 EWAEAVGR--FYPVIKAFPLEGPARP-EWADYPAQALLLDGKRPGSG---EAYPRAWAKPLLA---TGRRVILAGGI-AP  157 (203)
T ss_dssp             HHHHHHTT--TSCEEEEEECSSSCCG-GGGGSSCSEEEEECSSTTSC---CCCCGGGGHHHHH---TTSCEEECSSC-CS
T ss_pred             HHHHHhcc--CCCEEEEEEcCChHhh-hhhhcCCCEEEEcCCCCCCC---CccCHHHHHhhhc---cCCcEEEECCC-CH
Confidence            45565632  5788733332 22222 333344899998864 3332   1234555544211   25799999998 67


Q ss_pred             HHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      +.+.+++..++.+|=+.|.+=..-..+..+.+.++++.++
T Consensus       158 eNV~~ai~~~p~gVDvsSGvE~~pG~KD~~ki~~fi~~~r  197 (203)
T 1v5x_A          158 ENLEEVLALRPYALDLASGVEEAPGVKSAEKLRALFARLA  197 (203)
T ss_dssp             TTHHHHHHHCCSEEEESGGGEEETTEECHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEeCCceecCCCCcCHHHHHHHHHHHH
Confidence            8888888669999999986521001123444555555443

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=91.47  E-value=1.2  Score=37.48  Aligned_cols=67  Identities=18%  Similarity=0.102  Sum_probs=47.5

Q ss_pred             HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe---cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         77 DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD---GGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        77 ~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~---GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      -++...++|||.|-+-+         ..+.+.+.++++.+  ++|++++   +|-.-.-+..+.-++|.+.|.++...++
T Consensus       176 Ra~ay~~AGAD~if~~~---------~~~~ee~~~~~~~~--~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~r  244 (298)
T 3eoo_A          176 RAIAYVEAGADMIFPEA---------MKTLDDYRRFKEAV--KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAYR  244 (298)
T ss_dssp             HHHHHHHTTCSEEEECC---------CCSHHHHHHHHHHH--CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHHH
T ss_pred             HHHhhHhcCCCEEEeCC---------CCCHHHHHHHHHHc--CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHH
Confidence            35667899999998843         34667788888888  5888663   4422223455566789999999988776


Q ss_pred             H
Q psy16780        154 G  154 (202)
Q Consensus       154 ~  154 (202)
                      +
T Consensus       245 a  245 (298)
T 3eoo_A          245 A  245 (298)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=91.46  E-value=1.7  Score=36.33  Aligned_cols=97  Identities=21%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEecc--CHHH----HHHHHHcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGIL--TAED----AKIGVEMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~--~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipii  123 (202)
                      ..+.++++. .++.||++|-..  ++++    +..+...|-+-+++.-.|++. ....  .++..+..+++.. ...||+
T Consensus       121 n~~Ll~~~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~-~y~~~~~dl~~i~~lk~~~-~~~pV~  197 (292)
T 1o60_A          121 QTDLVEAMA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNF-GYDNLIVDMLGFSVMKKAS-KGSPVI  197 (292)
T ss_dssp             CHHHHHHHH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHT-TSCCEE
T ss_pred             CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHhhC-CCCCEE
Confidence            355788877 569999999762  5544    345567888666665544421 1111  3556677666553 258999


Q ss_pred             Ee-----------cCCCCH-----HHHH-HHHHhCCCEEEEcHHH
Q psy16780        124 LD-----------GGVRYG-----TDVF-KALALGAKMVFVGRPA  151 (202)
Q Consensus       124 a~-----------GGI~~~-----~D~~-kal~~GAd~V~ig~~~  151 (202)
                      .+           |+-..+     ..+. .++++||++++|=+-+
T Consensus       198 ~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~  242 (292)
T 1o60_A          198 FDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP  242 (292)
T ss_dssp             EEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred             EECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence            83           222233     2333 5667899999998755

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=91.42  E-value=1.2  Score=37.06  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=46.4

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec--CCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG--GVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G--GI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++.+.++|+|.|.+-+         .++.+.+.++.+.+  ++|+....  +..+   +.+.-++|.+.|.++...++.
T Consensus       174 a~ay~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~~P~n~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ra  238 (275)
T 2ze3_A          174 GQAYADAGADGIFVPL---------ALQSQDIRALADAL--RVPLNVMAFPGSPV---PRALLDAGAARVSFGQSLMLA  238 (275)
T ss_dssp             HHHHHHTTCSEEECTT---------CCCHHHHHHHHHHC--SSCEEEECCTTSCC---HHHHHHTTCSEEECTTHHHHH
T ss_pred             HHHHHHCCCCEEEECC---------CCCHHHHHHHHHhc--CCCEEEecCCCCCC---HHHHHHcCCcEEEEChHHHHH
Confidence            5677899999998843         35567778888888  67876653  3344   455567999999999887764

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=91.40  E-value=2.8  Score=35.99  Aligned_cols=126  Identities=14%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHH----HHHHHcCCcEEEeeccCcCCCCC--ccchHHHHHHHHHHhCCCcEEEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDA----KIGVEMGASAIMVSNHGGRQLDY--VPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~--~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      .+..|+++.+ ++.||++|-- .|.++.    +.+.+.|.+.+.+.+.  +....  ...++..++.+++.+ +.+||..
T Consensus       137 n~~LL~~va~-~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~--s~Yp~~~~~~nL~ai~~lk~~f-~~lpVg~  212 (349)
T 2wqp_A          137 NYPLIKLVAS-FGKPIILSTGMNSIESIKKSVEIIREAGVPYALLHCT--NIYPTPYEDVRLGGMNDLSEAF-PDAIIGL  212 (349)
T ss_dssp             CHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECC--CCSSCCGGGCCTHHHHHHHHHC-TTSEEEE
T ss_pred             CHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecc--CCCCCChhhcCHHHHHHHHHHC-CCCCEEe
Confidence            3567777765 5899999965 455553    4455678766666432  12211  122455677776654 2489987


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHH---H-HHHHHHHHHHHHHHHHHhCC
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSG---V-RKVLDILINEFDQALALSGC  183 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~---v-~~~i~~l~~~L~~~m~~~G~  183 (202)
                      ++-=....-...|+++||+.+-  +.|--.-...|.++   + -+-+..|.++++..-..+|.
T Consensus       213 sdHt~G~~~~~AAvAlGA~iIE--kH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG~  273 (349)
T 2wqp_A          213 SDHTLDNYACLGAVALGGSILE--RHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGG  273 (349)
T ss_dssp             ECCSSSSHHHHHHHHHTCCEEE--EEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCcHHHHHHHHHhCCCEEE--eCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhCC
Confidence            7644345556677889999443  22211101123211   0 13456777888888888885

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=91.28  E-value=1.6  Score=36.79  Aligned_cols=90  Identities=16%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             CccccHHHHHHHHHhc-CCCEEEEec--cCHHH----HHHHHHcCCc--EEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780         48 DETINWSDVTWLKTIT-KLPIVLKGI--LTAED----AKIGVEMGAS--AIMVSNHGGRQLDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~-~~Pv~vK~~--~~~~~----a~~l~~aG~d--~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~  118 (202)
                      +++...+.++++|+.- ++++.+-..  .+.++    ++.+.+.|++  .+.=      ..  .+.+++.+.++++.+  
T Consensus       165 ~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE~------P~--~~~~~~~~~~l~~~~--  234 (345)
T 2zad_A          165 NLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQ------PV--RREDIEGLKFVRFHS--  234 (345)
T ss_dssp             CHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEEC------CS--CTTCHHHHHHHHHHS--
T ss_pred             CHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeeeC------CC--CcccHHHHHHHHHhC--
Confidence            4455567888888772 356665422  34444    4566778887  6531      00  123566778887776  


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhC-CCEEEE
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALG-AKMVFV  147 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~G-Ad~V~i  147 (202)
                      ++||++++.+.+..++.+++..| +|.|++
T Consensus       235 ~ipia~dE~~~~~~~~~~~i~~~~~d~v~i  264 (345)
T 2zad_A          235 PFPVAADESARTKFDVMRLVKEEAVDYVNI  264 (345)
T ss_dssp             SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             CCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999987 899999

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=91.28  E-value=0.44  Score=41.93  Aligned_cols=92  Identities=10%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++.+|+.+  ++++.+...  .+.+++    +.+.+.|++.|.=   +     ..+.+++.+.++++.+. .
T Consensus       224 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~~-~  294 (441)
T 2hxt_A          224 NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEE---P-----TSPDDVLGHAAIRQGIT-P  294 (441)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEEC---C-----SCTTCHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeC---C-----CCHHHHHHHHHHHhhCC-C
Confidence            4555677888888876  577877643  455554    3445566665531   0     01235667777777662 5


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      +||++++.+.+..++.+++..| +|+|++-
T Consensus       295 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  324 (441)
T 2hxt_A          295 VPVSTGEHTQNRVVFKQLLQAGAVDLIQID  324 (441)
T ss_dssp             SCEEECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred             CCEEEeCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            9999999999999999999987 7999874

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=91.20  E-value=0.68  Score=36.91  Aligned_cols=92  Identities=14%  Similarity=0.011  Sum_probs=59.8

Q ss_pred             cccHHHHHHHHHhcCCCEEEEec-cC-HHHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEec
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGI-LT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~-~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~G  126 (202)
                      .+..+.++++++.++.|+.+-+- .+ .+.++.+.++|+|+|+++..  ..    ... ...++.+++.   .+.++.+=
T Consensus        50 ~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~--~~----~~~~~~~~~~i~~~---g~~igv~~  120 (228)
T 1h1y_A           50 TIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIE--VS----RDNWQELIQSIKAK---GMRPGVSL  120 (228)
T ss_dssp             CBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGG--GC----TTTHHHHHHHHHHT---TCEEEEEE
T ss_pred             hhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEECCC--Cc----ccHHHHHHHHHHHc---CCCEEEEE
Confidence            33468999999988777775543 33 34588888899999999542  11    112 2344554332   45555544


Q ss_pred             CCCCHHHHHHHHHh---CCCEEEEcHH
Q psy16780        127 GVRYGTDVFKALAL---GAKMVFVGRP  150 (202)
Q Consensus       127 GI~~~~D~~kal~~---GAd~V~ig~~  150 (202)
                      .-.++.+..+.+..   ++|.|.+++.
T Consensus       121 ~p~t~~e~~~~~~~~~~~~d~vl~~sv  147 (228)
T 1h1y_A          121 RPGTPVEEVFPLVEAENPVELVLVMTV  147 (228)
T ss_dssp             CTTSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred             eCCCCHHHHHHHHhcCCCCCEEEEEee
Confidence            55677666777766   9999999653

>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*

Probab=91.17  E-value=2.1  Score=34.53  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .+.+++|.+.++.||.+-.. .+    .+.++.+.+.+- -+.+-         .|.+++.++.++......+++-++- 
T Consensus        43 ~~~~~ei~~~v~G~Vs~EV~a~d~e~mi~eA~~L~~~~~-nv~IK---------IP~T~eGl~A~~~L~~~GI~vn~Tl-  111 (223)
T 3s1x_A           43 GDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGD-NAVVK---------IPMTEDGLRAIKTLSSEHINTNCTL-  111 (223)
T ss_dssp             HHHHHHHHHHCSSCEEEECCCCSHHHHHHHHHHHHHTCT-TEEEE---------EESSHHHHHHHHHHHHTTCCEEEEE-
T ss_pred             HHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHhCC-CEEEE---------eCCCHHHHHHHHHHHHCCCcEEEEE-
Confidence            46889999988889998654 22    466788888763 33331         2556666666544333357777654 


Q ss_pred             CCCHHHHHHHHHhCCCEEE--EcH
Q psy16780        128 VRYGTDVFKALALGAKMVF--VGR  149 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~--ig~  149 (202)
                      |.|..+++.|..+||+.|.  +||
T Consensus       112 ifS~~QA~~Aa~AGa~yISPfvgR  135 (223)
T 3s1x_A          112 VFNPIQALLAAKAGVTYVSPFVGR  135 (223)
T ss_dssp             ECSHHHHHHHHHTTCSEEEEBSHH
T ss_pred             eCCHHHHHHHHHcCCeEEEeecch
Confidence            8999999999999999874  444

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=91.12  E-value=0.99  Score=34.98  Aligned_cols=65  Identities=22%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.++.+.+.|++.|.++...       +...+.+..+++.++.+. ++..|-+.+.+++..+...|||++ ++.
T Consensus        26 ~~~~~~~~~G~~~iev~~~~-------~~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~   90 (205)
T 1wa3_A           26 EKALAVFEGGVHLIEITFTV-------PDADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSP   90 (205)
T ss_dssp             HHHHHHHHTTCCEEEEETTS-------TTHHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECS
T ss_pred             HHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcC
Confidence            44677888999999885421       112344666666553234 455566889999999999999999 654

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=91.06  E-value=1  Score=38.02  Aligned_cols=66  Identities=18%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE---ecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL---DGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia---~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++...++|+|.|-+-+         .++.+.+.++++.++ .+|+.+   .||-...-.+.+.-++|.+.|..+..+++
T Consensus       184 a~ay~eAGAD~ifi~~---------~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~r  252 (307)
T 3lye_A          184 LRAARDEGADVGLLEG---------FRSKEQAAAAVAALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLA  252 (307)
T ss_dssp             HHHHHHTTCSEEEECC---------CSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHH
T ss_pred             HHHHHHCCCCEEEecC---------CCCHHHHHHHHHHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChHHHH
Confidence            4667899999998843         345667788888774 367654   34422122345555789999999886665

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=90.95  E-value=3  Score=35.97  Aligned_cols=65  Identities=22%  Similarity=0.172  Sum_probs=51.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+.++.+.++|+|.|.++-..       ..+.+++.++++..  ++|++++-- +++.-+.+++..|+|.+=+--
T Consensus        49 v~Qi~~l~~aG~diVRvavp~-------~~~a~al~~I~~~~--~vPlvaDiH-f~~~lal~a~e~G~dklRINP  113 (366)
T 3noy_A           49 LNQIKRLYEAGCEIVRVAVPH-------KEDVEALEEIVKKS--PMPVIADIH-FAPSYAFLSMEKGVHGIRINP  113 (366)
T ss_dssp             HHHHHHHHHTTCCEEEEECCS-------HHHHHHHHHHHHHC--SSCEEEECC-SCHHHHHHHHHTTCSEEEECH
T ss_pred             HHHHHHHHHcCCCEEEeCCCC-------hHHHHHHHHHHhcC--CCCEEEeCC-CCHHHHHHHHHhCCCeEEECC
Confidence            567889999999999995421       23456788888877  899999643 778889999999999987754

>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A

Probab=90.80  E-value=1.2  Score=38.65  Aligned_cols=89  Identities=7%  Similarity=-0.011  Sum_probs=65.7

Q ss_pred             cHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ..+.++++|+.+  ++++.+...  .++++    ++.+.+.|+..+.=   +     ..+.+++.+.++++.+  .+||+
T Consensus       185 ~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe---P-----~~~~d~~~~~~l~~~~--~iPIa  254 (388)
T 3tcs_A          185 TEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFCHFEE---P-----CPYWELAQTKQVTDAL--DIDVT  254 (388)
T ss_dssp             HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCCEEEC---C-----SCTTCHHHHHHHHHHC--SSCEE
T ss_pred             HHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCeEEEC---C-----CCccCHHHHHHHHHhc--CCCEE
Confidence            457889999986  678888754  45554    45667788877641   0     0122566778887776  79999


Q ss_pred             EecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        124 LDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      ++..+.+..|+.+++..| +|.|++--.
T Consensus       255 ~dE~~~~~~~~~~~i~~~a~d~v~~d~~  282 (388)
T 3tcs_A          255 GGEQDCDLPTWQRMIDMRAVDIVQPDIL  282 (388)
T ss_dssp             ECTTCCCHHHHHHHHHHTCCSEECCCHH
T ss_pred             cCCccCCHHHHHHHHHcCCCCEEEeCcc
Confidence            999999999999999986 789887643

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=90.79  E-value=1  Score=37.78  Aligned_cols=71  Identities=20%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALWG  154 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~~  154 (202)
                      +.++.+.++|||.|.+-+        +.++.+.+.++.+.+..++|++++-.-...-+..+.-++| .+.|.++...+++
T Consensus       170 ~Ra~ay~eAGAd~i~~e~--------~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~ra  241 (290)
T 2hjp_A          170 RRGQAYEEAGADAILIHS--------RQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA  241 (290)
T ss_dssp             HHHHHHHHTTCSEEEECC--------CCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHH
T ss_pred             HHHHHHHHcCCcEEEeCC--------CCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHHH
Confidence            446778999999999843        1345566788888885559999742100122345556789 9999999987764

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=90.76  E-value=2.4  Score=36.54  Aligned_cols=83  Identities=18%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             cCCCEEEEec-------cCHHHHHHHH-HcCCcEEEeeccCcC---CCCCc--c--chHHHHHHHHHHhCCCcEEEEe--
Q psy16780         63 TKLPIVLKGI-------LTAEDAKIGV-EMGASAIMVSNHGGR---QLDYV--P--ASIEALPEIAKAVGHKVDVYLD--  125 (202)
Q Consensus        63 ~~~Pv~vK~~-------~~~~~a~~l~-~aG~d~I~v~~~gg~---~~~~~--~--~~~~~l~~i~~~~~~~ipiia~--  125 (202)
                      -+.|++.-+.       .+++.++++. ..+++++.++-....   +..+.  .  ..++.+..+++.+  ++||++-  
T Consensus       118 p~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~--~vPVivK~v  195 (368)
T 3vkj_A          118 PTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKEL--SVPIIVKES  195 (368)
T ss_dssp             SSSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTC--SSCEEEECS
T ss_pred             cCcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHc--CCCEEEEeC
Confidence            3688876432       2467776644 357777776532110   00111  1  1455677776665  7999995  


Q ss_pred             cCCCCHHHHHHHHHhCCCEEEE
Q psy16780        126 GGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       126 GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      |+-.+++++.++..+|||+|.+
T Consensus       196 G~g~s~~~A~~l~~aGad~I~V  217 (368)
T 3vkj_A          196 GNGISMETAKLLYSYGIKNFDT  217 (368)
T ss_dssp             SSCCCHHHHHHHHHTTCCEEEC
T ss_pred             CCCCCHHHHHHHHhCCCCEEEE
Confidence            6557999999999999999988

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=90.72  E-value=0.35  Score=40.12  Aligned_cols=41  Identities=20%  Similarity=0.064  Sum_probs=35.4

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ...+.++++|+.+++||++... .+++.++.+  .|+|+++|++
T Consensus       189 ~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS  230 (271)
T 1ujp_A          189 EVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGS  230 (271)
T ss_dssp             CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred             cHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence            3467899999999999999965 569999997  9999999965

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A

Probab=90.64  E-value=1.4  Score=36.85  Aligned_cols=92  Identities=15%  Similarity=0.076  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccC------HHHHHHHHHcCC------cEEEeeccCcCCCCCcc-chHHHHHHHHHHhCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILT------AEDAKIGVEMGA------SAIMVSNHGGRQLDYVP-ASIEALPEIAKAVGH  118 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~------~~~a~~l~~aG~------d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~  118 (202)
                      ..+.++++. .++.||++|-...      ...++.+.+.|.      +-|++.-.|-+-..... .++..+..+++ .  
T Consensus       120 n~~LLr~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vdl~~i~~lk~-~--  195 (288)
T 3tml_A          120 QTDFIHACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIMRE-T--  195 (288)
T ss_dssp             CHHHHHHHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECCHHHHHHGGG-G--
T ss_pred             CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCCHHHHHHHHh-c--


Q ss_pred             CcEEEEe---------------cCCCCHH--HHHHHHHhCCCEEEE
Q psy16780        119 KVDVYLD---------------GGVRYGT--DVFKALALGAKMVFV  147 (202)
Q Consensus       119 ~ipiia~---------------GGI~~~~--D~~kal~~GAd~V~i  147 (202)
                      .+||+.+               ||-|...  -...|+++|||+++|
T Consensus       196 ~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~i  241 (288)
T 3tml_A          196 NAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFM  241 (288)
T ss_dssp             SSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEE
T ss_pred             CCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEE

>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}

Probab=90.63  E-value=1  Score=38.60  Aligned_cols=88  Identities=18%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC------C-------ccchHHHHHHHH---HHhCCCcEEEEecC
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD------Y-------VPASIEALPEIA---KAVGHKVDVYLDGG  127 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~------~-------~~~~~~~l~~i~---~~~~~~ipiia~GG  127 (202)
                      ++++-+=.+++...+..+.++|+..|...-  ||-.|      +       .-+....+.++.   +..+.+.-|++. .
T Consensus       154 GI~~N~TliFS~~Qa~~aa~AGa~~ISPFV--gRi~D~~~~~~g~~~~~~~~d~Gv~~v~~i~~~y~~~g~~T~vl~A-S  230 (334)
T 3hjz_A          154 GIKCNLTLLFNFCQAVTCANANITLISPFV--GRILDWHKAKTGKTSFIGAEDPGVISVTQIYKYFKEKGFKTEVMGA-S  230 (334)
T ss_dssp             TCCEEEESCCSHHHHHHHHHTTCSEECCBH--HHHHHHHHHHHCCCCCCGGGCHHHHHHHHHHHHHHHHTCCCEEEEB-C
T ss_pred             CCcEEEEEeCCHHHHHHHHHcCCcEEEeec--cHHHHHhhhccCCcccccccCcHHHHHHHHHHHHHHcCCCCEEEEe-c
Confidence            566666666788888888899988876521  22111      0       012233344443   333345556554 5


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +|+..++..  .+|||.+-+.-.++..+.
T Consensus       231 fRn~~~v~~--laG~d~~Tipp~ll~~L~  257 (334)
T 3hjz_A          231 FRNLDEIKE--LAGCDLLTIAPKFLEELK  257 (334)
T ss_dssp             CSSHHHHHH--TTTCSEEEECHHHHHHHH
T ss_pred             CCCHHHHHH--HhCCCEEEcCHHHHHHHH
Confidence            999999987  569999999988887643

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}

Probab=90.62  E-value=0.23  Score=43.80  Aligned_cols=87  Identities=7%  Similarity=-0.136  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         53 WSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        53 ~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      .+.++++|+.+  ++++.+...  .+.+++    +.+.+.|++.|.---        .+.+++.+.++++.+  .+||++
T Consensus       215 ~e~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~--------~~~d~~~~~~l~~~~--~iPIa~  284 (426)
T 4e4f_A          215 PKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMEDPT--------PAENQACFRLIRQHT--VTPIAV  284 (426)
T ss_dssp             HHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEECCS--------CCSSGGGGHHHHTTC--CSCEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEECCC--------ChHHHHHHHHHHhcC--CCCEEe
Confidence            46899999987  688988754  455554    555677887775210        112455667776655  799999


Q ss_pred             ecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        125 DGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      ++.+.+..++.+++..| +|.|++--
T Consensus       285 dE~~~~~~~~~~~i~~ga~d~v~~k~  310 (426)
T 4e4f_A          285 GEVFNSIWDCKQLIEEQLIDYIRTTI  310 (426)
T ss_dssp             CTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred             CCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence            99999999999999987 78888743

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=90.61  E-value=2.8  Score=34.78  Aligned_cols=98  Identities=13%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEecc--CHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGIL--TAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~--~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ..+.++++. .++.||++|...  ++++    +..+...|-+-+++.-.|++- ...  ..+...+..+++.. ...||+
T Consensus       118 n~~ll~~~a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~-~~~~~~~dl~~i~~lk~~~-~~~pV~  194 (280)
T 2qkf_A          118 QTDLVVAMA-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSF-GYDNLVVDMLGFGVMKQTC-GNLPVI  194 (280)
T ss_dssp             BHHHHHHHH-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHT-TTCCEE
T ss_pred             CHHHHHHHH-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHHhC-CCCCEE
Confidence            355777874 579999999762  5544    345567887666665544421 111  13555677776653 257999


Q ss_pred             Ee-----------cCCCCH-----HH-HHHHHHhCCCEEEEcHHHH
Q psy16780        124 LD-----------GGVRYG-----TD-VFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       124 a~-----------GGI~~~-----~D-~~kal~~GAd~V~ig~~~l  152 (202)
                      .+           ||-..+     .. +..++++||++++|=+.+-
T Consensus       195 ~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~  240 (280)
T 2qkf_A          195 FDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD  240 (280)
T ss_dssp             EEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC---
T ss_pred             EECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecCC
Confidence            85           333333     23 3355678999999988765

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=90.56  E-value=0.9  Score=35.52  Aligned_cols=72  Identities=14%  Similarity=0.035  Sum_probs=47.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcC-CCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH-HHHHHHHhCCCEEEEcH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGR-QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT-DVFKALALGAKMVFVGR  149 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~-~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~-D~~kal~~GAd~V~ig~  149 (202)
                      .+.++.+.++|+|.+.+.-..|+ ... .....+.+.++++.+  +.|+.+.+.+.+.. .+..+..+|||.|.+..
T Consensus        19 ~~~~~~~~~~G~~~i~~~~~dg~~~~~-~~~g~~~i~~i~~~~--~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~   92 (220)
T 2fli_A           19 ASELARIEETDAEYVHIDIMDGQFVPN-ISFGADVVASMRKHS--KLVFDCHLMVVDPERYVEAFAQAGADIMTIHT   92 (220)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEBSSSSSC-BCBCHHHHHHHHTTC--CSEEEEEEESSSGGGGHHHHHHHTCSEEEEEG
T ss_pred             HHHHHHHHHcCCCEEEEEeecCCCCCc-cccCHHHHHHHHHhC--CCCEEEEEeecCHHHHHHHHHHcCCCEEEEcc
Confidence            46688889999999766432121 110 011145566666544  68999999999976 46666679999998853

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=90.49  E-value=7.2  Score=32.87  Aligned_cols=110  Identities=14%  Similarity=0.073  Sum_probs=70.7

Q ss_pred             cCHHHHHHHH-HcCCcEEEeecc---CcCCCCCc-cchHHHHHHHHHHhCCCcEEEEecCC-------------------
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNH---GGRQLDYV-PASIEALPEIAKAVGHKVDVYLDGGV-------------------  128 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~---gg~~~~~~-~~~~~~l~~i~~~~~~~ipiia~GGI-------------------  128 (202)
                      .+|+++.... +.|+|.+-++-+   |-....+. .-+++.|.++.+..  ++|++.-||=                   
T Consensus       155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~gg~~~~  232 (307)
T 3n9r_A          155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDNVRKSYLDAGGDLKG  232 (307)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH--CSCEEESSCCCCCHHHHHHHHHTTCCCTT
T ss_pred             CCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcC--CCCeEEeCCCCcchHHHHHHHHhcCccCC
Confidence            3688888765 699999988642   22211122 23677788886655  6999998864                   


Q ss_pred             ---CCHHHHHHHHHhCCCEEEEcHHHHHHh----h---hcC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        129 ---RYGTDVFKALALGAKMVFVGRPALWGL----A---HSG-----K-SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       129 ---~~~~D~~kal~~GAd~V~ig~~~l~~~----~---~~G-----~-~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                         ...+++.+++..|..=|-+++-+-.+.    .   .+.     + .-+....+.+++-++..|..+|+.
T Consensus       233 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~  304 (307)
T 3n9r_A          233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA  304 (307)
T ss_dssp             CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCCCHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence               236788899999999999999654321    1   111     1 123333455677777777777764

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=90.19  E-value=1.4  Score=38.06  Aligned_cols=91  Identities=11%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             cccHHHHHHHHHhc-CCCEEEEec--cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780         50 TINWSDVTWLKTIT-KLPIVLKGI--LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV  122 (202)
Q Consensus        50 ~~~~~~i~~i~~~~-~~Pv~vK~~--~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi  122 (202)
                      +...+.++++|+.+ ++++.+...  .+.    +.++.+.+.|++.|.=   +     ..+.+++.+.++++..  .+||
T Consensus       177 ~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEq---P-----~~~~d~~~~~~l~~~~--~iPI  246 (385)
T 3i6e_A          177 AFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQ---P-----VRAHHFELMARLRGLT--DVPL  246 (385)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCEEC---C-----SCTTCHHHHHHHHTTC--SSCE
T ss_pred             HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC---C-----CCcccHHHHHHHHHhC--CCCE
Confidence            33456777777775 556666642  232    3445566667666541   0     0122466677776655  7999


Q ss_pred             EEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        123 YLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +++.-+.+..|+.+++..| +|.|++--.
T Consensus       247 a~dE~~~~~~~~~~~~~~~~~d~v~~k~~  275 (385)
T 3i6e_A          247 LADESVYGPEDMVRAAHEGICDGVSIKIM  275 (385)
T ss_dssp             EESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             EEeCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence            9999999999999999987 799988643

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=90.07  E-value=0.92  Score=38.35  Aligned_cols=87  Identities=22%  Similarity=0.358  Sum_probs=57.1

Q ss_pred             HHHHHHHHHh---cCCCEEEE--e--------c--cCHHH----HHHHHHcCCc----EEEeeccCcCCCCCccchHHHH
Q psy16780         53 WSDVTWLKTI---TKLPIVLK--G--------I--LTAED----AKIGVEMGAS----AIMVSNHGGRQLDYVPASIEAL  109 (202)
Q Consensus        53 ~~~i~~i~~~---~~~Pv~vK--~--------~--~~~~~----a~~l~~aG~d----~I~v~~~gg~~~~~~~~~~~~l  109 (202)
                      .+.+.++.+.   +++|+++=  .        .  .+++.    ++.+.+.|+|    .|.+--           + +.+
T Consensus       162 l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~~y-----------~-e~f  229 (307)
T 3fok_A          162 LEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLPV-----------V-EEM  229 (307)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEEEC-----------C-TTH
T ss_pred             HHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEeCC-----------c-HHH
Confidence            4445555443   58998773  1        1  34444    5677889999    887721           1 345


Q ss_pred             HHHHHHhCCCcEEEEecCCC--CHHHHH----HHHH-hCCCEEEEcHHHHH
Q psy16780        110 PEIAKAVGHKVDVYLDGGVR--YGTDVF----KALA-LGAKMVFVGRPALW  153 (202)
Q Consensus       110 ~~i~~~~~~~ipiia~GGI~--~~~D~~----kal~-~GAd~V~ig~~~l~  153 (202)
                      .++.+..  .+||+..||=.  +.++++    +++. .||.++.+||-++.
T Consensus       230 ~~Vv~a~--~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ  278 (307)
T 3fok_A          230 ERVMEST--TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLY  278 (307)
T ss_dssp             HHHGGGC--SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSS
T ss_pred             HHHHHhC--CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhcc
Confidence            6665555  69999999876  345555    4556 59999999998763

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}

Probab=89.79  E-value=3.4  Score=35.44  Aligned_cols=91  Identities=12%  Similarity=0.088  Sum_probs=60.9

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++++|+.+  ++++.+-..  .++++    ++.+.+.|+..|.=   +     ..+.+++.+.++++..  ++|
T Consensus       177 ~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe---P-----~~~~d~~~~~~l~~~~--~ip  246 (381)
T 3fcp_A          177 ATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVDLIEQ---P-----VSAHDNAALVRLSQQI--ETA  246 (381)
T ss_dssp             HHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCSEEEC---C-----BCTTCHHHHHHHHHHS--SSE
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCccceeC---C-----CCcccHHHHHHHHHhC--CCC
Confidence            44556777777776  356665532  34444    34455666655530   0     0123567778887776  799


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      |+++..+.+..|+.+++..| +|.|++--.
T Consensus       247 Ia~dE~~~~~~~~~~~~~~~a~d~v~~k~~  276 (381)
T 3fcp_A          247 ILADEAVATAYDGYQLAQQGFTGAYALKIA  276 (381)
T ss_dssp             EEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred             EEECCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence            99999999999999999986 899988643

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*

Probab=89.39  E-value=1.8  Score=37.39  Aligned_cols=94  Identities=14%  Similarity=0.060  Sum_probs=64.3

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHH--cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVE--MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~--aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      +++...+.++++|+.+  ++++.+-.-  .+.+++    +.+.+  .|+..+.=   +     ..+.+++.+.++++.. 
T Consensus       168 ~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iEe---P-----~~~~d~~~~~~l~~~~-  238 (379)
T 3r0u_A          168 DFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQ---P-----VKYYDIKAMAEITKFS-  238 (379)
T ss_dssp             CHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEEC---C-----SCTTCHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEEC---C-----CCcccHHHHHHHHhcC-
Confidence            4445567888888887  467777643  455554    44555  45555531   0     0122466778887776 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                       .+||.++..+.+..|+.+++..| +|.|++--..
T Consensus       239 -~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~  272 (379)
T 3r0u_A          239 -NIPVVADESVFDAKDAERVIDEQACNMINIKLAK  272 (379)
T ss_dssp             -SSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred             -CCCEEeCCccCCHHHHHHHHHcCCCCEEEECccc
Confidence             79999999999999999999987 7999886543

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=89.38  E-value=0.59  Score=40.48  Aligned_cols=91  Identities=5%  Similarity=-0.019  Sum_probs=62.8

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---  116 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---  116 (202)
                      +.+...+.++++|+.+  ++++.+-.-  .+.+++    +.+.+.|++.+.=      ...   .+++.+.++++.+   
T Consensus       183 ~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~------P~~---~d~~~~~~l~~~l~~~  253 (392)
T 3p3b_A          183 GTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEE------AFH---EDEALYEDLKEWLGQR  253 (392)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEEEEEC------SSS---CCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEec------CCc---ccHHHHHHHHHhhccC
Confidence            3455677899999876  688887543  456554    4444556665531      011   3566677777761   


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALG-AKMVFVG  148 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig  148 (202)
                      +.++||++++ +.+..++.+++..| +|+|++-
T Consensus       254 g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik  285 (392)
T 3p3b_A          254 GQNVLIADGE-GLASPHLIEWATRGRVDVLQYD  285 (392)
T ss_dssp             TCCCEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred             CCCccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence            0279999999 99999999999988 7988873

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=89.28  E-value=5.6  Score=33.32  Aligned_cols=90  Identities=19%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-c---CC-CCCccchHH----HHHHHHHHhCCCcEEEEe
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-G---RQ-LDYVPASIE----ALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g---~~-~~~~~~~~~----~l~~i~~~~~~~ipiia~  125 (202)
                      .++++++. +-|+.+=...+.-.|+.+.++|+|+|-+++.+ +   .. .|.++.+++    .++.+.+..  ++||+++
T Consensus        13 ~lr~l~~~-~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~--~~PviaD   89 (298)
T 3eoo_A           13 KFRAAVAA-EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT--NLPLLVD   89 (298)
T ss_dssp             HHHHHHHH-SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred             HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc--CCeEEEE
Confidence            45555443 56888777889999999999999999998721 1   11 233444443    234455554  7999997


Q ss_pred             c--CCCCHHHHHH----HHHhCCCEEEE
Q psy16780        126 G--GVRYGTDVFK----ALALGAKMVFV  147 (202)
Q Consensus       126 G--GI~~~~D~~k----al~~GAd~V~i  147 (202)
                      .  |-.++.++.+    ...+||.+|-+
T Consensus        90 ~d~Gyg~~~~v~~~v~~l~~aGaagv~i  117 (298)
T 3eoo_A           90 IDTGWGGAFNIARTIRSFIKAGVGAVHL  117 (298)
T ss_dssp             CTTCSSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence            6  4446655543    34579998865

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=88.98  E-value=4.9  Score=34.95  Aligned_cols=123  Identities=11%  Similarity=0.117  Sum_probs=66.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHH----HHHHHcCC-cEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDA----KIGVEMGA-SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a----~~l~~aG~-d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~  125 (202)
                      .+..|+++.+ ++.||++|-- .|.++.    +.+.+.|. +.+.+.+.....-.....++..+..+++.++ .+||..+
T Consensus       147 N~pLL~~va~-~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~-~lpVG~S  224 (385)
T 1vli_A          147 HLPLLKYVAR-LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFP-EAVIGFS  224 (385)
T ss_dssp             CHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHST-TSEEEEE
T ss_pred             CHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcC-CCCEEeC
Confidence            3567777765 5899999965 466553    44556787 4444433211110111224556777766542 5899777


Q ss_pred             cCCCC-HHHHHHHHHhCCCEEEEcHHHHHHhhhcChHH---H-HHHHHHHHHHHHHHH
Q psy16780        126 GGVRY-GTDVFKALALGAKMVFVGRPALWGLAHSGKSG---V-RKVLDILINEFDQAL  178 (202)
Q Consensus       126 GGI~~-~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~---v-~~~i~~l~~~L~~~m  178 (202)
                      +--.. ..-...|+++||+.+-  +.|--.-...|++.   + -+-+..|.++++..-
T Consensus       225 dHt~G~~~~~~AAvAlGA~iIE--kHftldra~~G~D~~~SL~P~ef~~lv~~ir~i~  280 (385)
T 1vli_A          225 DHSEHPTEAPCAAVRLGAKLIE--KHFTIDKNLPGADHSFALNPDELKEMVDGIRKTE  280 (385)
T ss_dssp             ECCSSSSHHHHHHHHTTCSEEE--EEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHcCCCEEE--eCCCccccCCCCchhhhCCHHHHHHHHHHHHHHH
Confidence            64333 5556678889999443  22211101122211   0 133566777777777

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=88.93  E-value=4.5  Score=32.50  Aligned_cols=78  Identities=21%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             CCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH-hC
Q psy16780         65 LPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA-LG  141 (202)
Q Consensus        65 ~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~-~G  141 (202)
                      -+..||++  .++++++ +.++|+|++=+.-....   ....+.+...++.+..  ..|+...|=..+.+++.+.+. .+
T Consensus        19 ~~M~VKICGit~~ed~~-a~~~gaD~iGfIf~~~S---pR~V~~~~A~~i~~~~--~~~~~~v~v~v~~~ei~~~i~~~~   92 (228)
T 4aaj_A           19 SHMFVKICGIKSLEELE-IVEKHADATGVVVNSNS---KRRIPLEKAREIIENS--AIPVFLVSTMVGFSEWAMAIERTG   92 (228)
T ss_dssp             -CCEEEECCCCSHHHHH-HHHTTCSEEEEECSSSS---TTBCCHHHHHHHHHHC--SSCEEEEECCCCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCcHHHHH-HHHcCCCEEEEEecCCC---CCCCCHHHHHHHHHhh--CCCCEEEeccCchHHHHHHHHhcc
Confidence            35689987  5788886 67899999854332211   0122445556666555  566777776667888887775 68


Q ss_pred             CCEEEEc
Q psy16780        142 AKMVFVG  148 (202)
Q Consensus       142 Ad~V~ig  148 (202)
                      .|.|++=
T Consensus        93 ld~vQLH   99 (228)
T 4aaj_A           93 AQYIQVH   99 (228)
T ss_dssp             CSEEEEC
T ss_pred             chheecc
Confidence            9999984

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=88.85  E-value=1.4  Score=38.09  Aligned_cols=92  Identities=10%  Similarity=-0.031  Sum_probs=66.2

Q ss_pred             CccccHHHHHHHHHhc--CCCEE-EEec--cCHHHH----HHHHHcCC--cEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         48 DETINWSDVTWLKTIT--KLPIV-LKGI--LTAEDA----KIGVEMGA--SAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~-vK~~--~~~~~a----~~l~~aG~--d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      +++...+.++++|+.+  ++++. +..-  .+++++    +.+.+.|+  +.|.=   +   .  .+.+++.+.++++.+
T Consensus       168 ~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEq---P---~--~~~d~~~~~~l~~~~  239 (391)
T 3gd6_A          168 NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIES---P---A--PRNDFDGLYQLRLKT  239 (391)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEEC---C---S--CTTCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecC---C---C--ChhhHHHHHHHHHHc
Confidence            5566677899999886  67888 7643  455554    55666777  66641   0   0  122567778887776


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                        .+||  +..+.+..|+.+++..| +|.|++--..
T Consensus       240 --~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~  271 (391)
T 3gd6_A          240 --DYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVF  271 (391)
T ss_dssp             --SSCE--EEECCCHHHHHHHHHHTCCSEEEECHHH
T ss_pred             --CCCc--CCCCCCHHHHHHHHHcCCCCEEEECchh
Confidence              7999  78899999999999987 8999987644

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=88.78  E-value=6  Score=33.23  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc----CC-CCCccchHHH-HHHHHHHhC--CCcEEEEec
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG----RQ-LDYVPASIEA-LPEIAKAVG--HKVDVYLDG  126 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg----~~-~~~~~~~~~~-l~~i~~~~~--~~ipiia~G  126 (202)
                      .++++.+.-+.|+.+=.+.+.-.|+.+.++|+|++-+++.+-    .. .|.+..+++- +..++...+  .++||+++.
T Consensus         8 ~Lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~   87 (302)
T 3fa4_A            8 SLRRALENPDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADA   87 (302)
T ss_dssp             HHHHHHHSTTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEEC
T ss_pred             HHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEEC
Confidence            455555444457776677899999999999999999976311    11 2334445443 333322222  379999976


Q ss_pred             --CCCCHHHHH----HHHHhCCCEEEE
Q psy16780        127 --GVRYGTDVF----KALALGAKMVFV  147 (202)
Q Consensus       127 --GI~~~~D~~----kal~~GAd~V~i  147 (202)
                        |-.++.++.    +...+||.+|.+
T Consensus        88 d~Gyg~~~~v~~tv~~l~~aGaagv~i  114 (302)
T 3fa4_A           88 DTGYGGPIMVARTTEQYSRSGVAAFHI  114 (302)
T ss_dssp             TTTTSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence              444555544    344589999976

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=88.77  E-value=0.57  Score=41.79  Aligned_cols=65  Identities=22%  Similarity=0.191  Sum_probs=46.9

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.+..+.++|+|.+++.+.+|..    ...++.+..+++..  .+|++ .|+|.+.+++..++  |||+|.+|
T Consensus       230 ~~~a~~l~~~gvd~lvvdta~G~~----~~~L~~I~~l~~~~--~vpvi-~k~v~~~~~a~~l~--G~d~v~vg  294 (486)
T 2cu0_A          230 IKRAIELDKAGVDVIVVDTAHAHN----LKAIKSMKEMRQKV--DADFI-VGNIANPKAVDDLT--FADAVKVG  294 (486)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCCCC----HHHHHHHHHHHHTC--CSEEE-EEEECCHHHHTTCT--TSSEEEEC
T ss_pred             HHHHHHHHHhcCCceEEEecCCcE----eehhhHHHHHHHHh--CCccc-cCCcCCHHHHHHhh--CCCeEEEe
Confidence            466788899999999887644321    12334456666655  79997 57888999887666  99999984

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A

Probab=88.76  E-value=1.5  Score=37.74  Aligned_cols=91  Identities=12%  Similarity=0.071  Sum_probs=59.2

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD  121 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip  121 (202)
                      +...+.++++|+.+  ++++.+...  .+.++    ++.+.+.|+..|.       +. ..+.+++.+.++++..  .+|
T Consensus       178 ~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ip  247 (382)
T 3dgb_A          178 DRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGIDLIE-------QP-ISRNNRAGMVRLNASS--PAP  247 (382)
T ss_dssp             HHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTCCCEE-------CC-BCTTCHHHHHHHHHHC--SSC
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCcCeee-------CC-CCccCHHHHHHHHHhC--CCC
Confidence            33455666776665  356666532  34433    3344555555443       00 0122566778887776  799


Q ss_pred             EEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        122 VYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       122 iia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      |+++..+.+..|+.+++..| +|.|++--.
T Consensus       248 Ia~dE~~~~~~~~~~~~~~~~~d~v~~k~~  277 (382)
T 3dgb_A          248 IMADESIECVEDAFNLAREGAASVFALKIA  277 (382)
T ss_dssp             EEESTTCSSHHHHHHHHHHTCCSEEEECHH
T ss_pred             EEeCCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence            99999999999999999986 899988643

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=88.40  E-value=0.57  Score=37.53  Aligned_cols=42  Identities=14%  Similarity=0.108  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.+++||++.+. .+.++++.+.++|+|+++++.
T Consensus       179 ~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGs  221 (248)
T 1geq_A          179 AYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGS  221 (248)
T ss_dssp             HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred             HHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcH
Confidence            456889999888999998865 556999999999999999964

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=88.36  E-value=8.4  Score=32.42  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-c---CC-CCCccchHHH-HHHHHHHhC--C-CcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-G---RQ-LDYVPASIEA-LPEIAKAVG--H-KVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g---~~-~~~~~~~~~~-l~~i~~~~~--~-~ipii  123 (202)
                      -+.++++.+.-+.|+.+=...+.-.|+.+.++|+|+|-++|.+ +   .. .|.++.+++. +..++...+  . ++||+
T Consensus        13 a~~lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~Pvi   92 (307)
T 3lye_A           13 AKKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLI   92 (307)
T ss_dssp             HHHHHHHHHHCCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEE
T ss_pred             HHHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEE
Confidence            3455665554446777767789999999999999999997631 1   11 2334445443 333322222  2 59999


Q ss_pred             Eec--CCCCHHHHH----HHHHhCCCEEEE
Q psy16780        124 LDG--GVRYGTDVF----KALALGAKMVFV  147 (202)
Q Consensus       124 a~G--GI~~~~D~~----kal~~GAd~V~i  147 (202)
                      ++.  |-.++.++.    +...+||.+|-+
T Consensus        93 aD~d~Gyg~~~~v~~~v~~l~~aGaagv~i  122 (307)
T 3lye_A           93 ADMDTGYGGPIMVARTVEHYIRSGVAGAHL  122 (307)
T ss_dssp             EECTTCSSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EECCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            976  444555544    344589999866

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...

Probab=88.31  E-value=2.8  Score=34.66  Aligned_cols=95  Identities=21%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEecc--CHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGIL--TAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~--~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ..+.++++. .++.||++|...  ++++    +..+...|-+-+++.-+|++. ...  ..+...+..+++ .  . ||+
T Consensus       107 n~~ll~~~a-~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~~-~y~~~~~dl~~i~~lk~-~--~-pVi  180 (267)
T 2nwr_A          107 QTDLLLAAA-KTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTF-GYNNLVVDFRSLPIMKQ-W--A-KVI  180 (267)
T ss_dssp             CHHHHHHHH-TTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEEC-SSSCEECCTTHHHHHTT-T--S-EEE
T ss_pred             CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHH-c--C-CEE
Confidence            345777774 679999999763  4433    455667887666665555421 111  134456666544 2  4 998


Q ss_pred             Ee---------------cCCCCH-HH-HHHHHHhCCCEEEEcHHHH
Q psy16780        124 LD---------------GGVRYG-TD-VFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       124 a~---------------GGI~~~-~D-~~kal~~GAd~V~ig~~~l  152 (202)
                      .+               +|-+.. .+ +..++++||++++|=+.+-
T Consensus       181 vD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~~  226 (267)
T 2nwr_A          181 YDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPE  226 (267)
T ss_dssp             EETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEESC
T ss_pred             EcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCEEEEEecCC
Confidence            85               342221 23 3456678999999977543

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=88.30  E-value=8.9  Score=31.78  Aligned_cols=94  Identities=17%  Similarity=0.192  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---CC-CCccchHHH-H---HHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---QL-DYVPASIEA-L---PEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~~-~~~~~~~~~-l---~~i~~~~~~~ipii  123 (202)
                      +...+++.++. +-|+.+=...+.-.|+.+.++|+|.|-++...+.   .. +..+.+++- +   +.+++.. +..+|+
T Consensus         5 t~~~lr~~k~~-g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~-~~~~vv   82 (275)
T 1o66_A            5 TVNTLQKMKAA-GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA-KNAMIV   82 (275)
T ss_dssp             CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-SSSEEE
T ss_pred             CHHHHHHHHhC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhC-CCCeEE
Confidence            34455555543 5688776678999999999999999965322111   11 333445553 2   3344443 346788


Q ss_pred             EecCC----CCHHHHH----HHHHhCCCEEEE
Q psy16780        124 LDGGV----RYGTDVF----KALALGAKMVFV  147 (202)
Q Consensus       124 a~GGI----~~~~D~~----kal~~GAd~V~i  147 (202)
                      ++=+.    .++++++    +.+..||++|-+
T Consensus        83 aD~pfgsy~~s~~~a~~na~rl~kaGa~aVkl  114 (275)
T 1o66_A           83 SDLPFGAYQQSKEQAFAAAAELMAAGAHMVKL  114 (275)
T ss_dssp             EECCTTSSSSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EECCCCCccCCHHHHHHHHHHHHHcCCcEEEE
Confidence            88554    3577776    466789999987

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=88.25  E-value=0.4  Score=37.31  Aligned_cols=44  Identities=20%  Similarity=0.327  Sum_probs=37.9

Q ss_pred             cccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeec
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ...++.++++++..++|+++-+..+++.+..+.++|+|+|.++.
T Consensus       148 ~~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs  191 (215)
T 1xi3_A          148 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS  191 (215)
T ss_dssp             CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred             CcCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence            45688999999888999998776778999999999999999865

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=88.21  E-value=9.5  Score=31.66  Aligned_cols=40  Identities=15%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             HHHHHHHHhc--CCCEEEEec-cC----HHHHHHHHHcCCcEEEeec
Q psy16780         54 SDVTWLKTIT--KLPIVLKGI-LT----AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        54 ~~i~~i~~~~--~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~   93 (202)
                      ++++.+++.+  ++||++... .+    .+.++.+.++|+|++.+..
T Consensus        69 ~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~  115 (301)
T 1xky_A           69 ALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVA  115 (301)
T ss_dssp             HHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence            3556555554  689999865 22    4567888999999998853

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=88.18  E-value=1.8  Score=36.40  Aligned_cols=69  Identities=20%  Similarity=0.152  Sum_probs=43.5

Q ss_pred             HHHHHHHcCCcEEEeeccCcCCCCCccc---hHH----HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         77 DAKIGVEMGASAIMVSNHGGRQLDYVPA---SIE----ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        77 ~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~----~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .++...+.|||.|+|.+-+.+......+   .++    .+..+++.+  ++||..+.  .+++-+.+++.+||+.+-=-+
T Consensus        68 ~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~--~vpiSIDT--~~~~V~~aAl~aGa~iINdvs  143 (297)
T 1tx2_A           68 HAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV--KLPISIDT--YKAEVAKQAIEAGAHIINDIW  143 (297)
T ss_dssp             HHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS--CSCEEEEC--SCHHHHHHHHHHTCCEEEETT
T ss_pred             HHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CceEEEeC--CCHHHHHHHHHcCCCEEEECC
Confidence            3577889999999998643211111111   111    123333333  78998877  688889999999999886554

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=88.00  E-value=2.1  Score=36.08  Aligned_cols=67  Identities=15%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe---cCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD---GGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~---GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++...++|+|.|-+-+         ..+.+.+.++++.++ ..|+.++   +|-...-.+.+.-++|.+.|..+..++++
T Consensus       176 a~ay~eAGAD~ifi~g---------~~~~~ei~~~~~~~~-~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~ra  245 (302)
T 3fa4_A          176 LRAARDAGADVGFLEG---------ITSREMARQVIQDLA-GWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAALGP  245 (302)
T ss_dssp             HHHHHTTTCSEEEETT---------CCCHHHHHHHHHHTT-TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTTTHHH
T ss_pred             HHHHHHcCCCEEeecC---------CCCHHHHHHHHHHhc-CCceeEEEecCCCCCCCCHHHHHHcCCCEEEEchHHHHH
Confidence            4567899999998743         235567778877773 3677653   33221223455557899999999877753

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=87.74  E-value=0.56  Score=36.99  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=37.5

Q ss_pred             cccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeec
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .+.++.++++++..++||++=+..+++.+..+.++|+++|.++.
T Consensus       150 ~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs  193 (221)
T 1yad_A          150 GRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMS  193 (221)
T ss_dssp             -CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESH
T ss_pred             CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEhH
Confidence            45688899998888999988766699999999999999999965

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=87.59  E-value=8.2  Score=31.79  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---CC-CCccchHHH-H---HHHHHHhCCCcEEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---QL-DYVPASIEA-L---PEIAKAVGHKVDVY  123 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~~-~~~~~~~~~-l---~~i~~~~~~~ipii  123 (202)
                      +...+++.++. +-|+.+=...+.-.|+.+.++|+|.|-++...+.   .. +..+.+++- +   +.+++.. +..+|+
T Consensus         5 t~~~lr~~k~~-g~~i~~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~-~~~~vv   82 (264)
T 1m3u_A            5 TISLLQKYKQE-KKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGA-PNCLLL   82 (264)
T ss_dssp             CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-TTSEEE
T ss_pred             CHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhC-CCCcEE
Confidence            34455555543 5688776678999999999999999988432111   11 333445543 2   3344443 346788


Q ss_pred             EecCCC---CHHHHH----HHHHhCCCEEEE
Q psy16780        124 LDGGVR---YGTDVF----KALALGAKMVFV  147 (202)
Q Consensus       124 a~GGI~---~~~D~~----kal~~GAd~V~i  147 (202)
                      ++=+..   ++++++    +.+..||++|-+
T Consensus        83 aD~pfgsy~~~~~a~~~a~rl~kaGa~aVkl  113 (264)
T 1m3u_A           83 ADLPFMAYATPEQAFENAATVMRAGANMVKI  113 (264)
T ss_dssp             EECCTTSSSSHHHHHHHHHHHHHTTCSEEEC
T ss_pred             EECCCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence            876665   777777    466789999987

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=87.48  E-value=9.2  Score=31.91  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=59.0

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-c---CC-CCCccchHHH----HHHHHHHhCCCcEEEEe
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-G---RQ-LDYVPASIEA----LPEIAKAVGHKVDVYLD  125 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g---~~-~~~~~~~~~~----l~~i~~~~~~~ipiia~  125 (202)
                      .++++.+. +-|+.+=...+.-.|+.+.++|+|+|-+++.+ +   .. .|.++.+++.    ++.+.+..  +.||+++
T Consensus         8 ~lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~--~~PviaD   84 (295)
T 1xg4_A            8 AFRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVD   84 (295)
T ss_dssp             HHHHHHHH-SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred             HHHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEec
Confidence            34444433 56888777789999999999999999998751 1   11 1334444443    34455555  6899997


Q ss_pred             c--CCC-CHHHHHH----HHHhCCCEEEE
Q psy16780        126 G--GVR-YGTDVFK----ALALGAKMVFV  147 (202)
Q Consensus       126 G--GI~-~~~D~~k----al~~GAd~V~i  147 (202)
                      .  |-. ++.++.+    .+.+||++|-+
T Consensus        85 ~d~Gyg~~~~~~~~~v~~l~~aGa~gv~i  113 (295)
T 1xg4_A           85 ADIGFGSSAFNVARTVKSMIKAGAAGLHI  113 (295)
T ss_dssp             CTTCSSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCcccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            6  444 5555543    44589999876

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=87.08  E-value=3.5  Score=37.10  Aligned_cols=41  Identities=27%  Similarity=0.449  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +++.+..+++..  ++||+.= |+.+.+|+.++..+|||+|.++
T Consensus       331 ~~~~i~~lr~~~--~~PvivK-gv~~~e~A~~a~~aGad~I~vs  371 (511)
T 1kbi_A          331 TWKDIEELKKKT--KLPIVIK-GVQRTEDVIKAAEIGVSGVVLS  371 (511)
T ss_dssp             CHHHHHHHHHHC--SSCEEEE-EECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHh--CCcEEEE-eCCCHHHHHHHHHcCCCEEEEc
Confidence            466778887776  7999986 4678999999999999999994

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=87.03  E-value=3.3  Score=35.08  Aligned_cols=70  Identities=19%  Similarity=0.168  Sum_probs=44.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCC----ccchHH-------HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCE
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDY----VPASIE-------ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKM  144 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~----~~~~~~-------~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~  144 (202)
                      +.++...+.|||.|+|++-..+....    ..+.-+       .+..+++..  ++||-.+.  .+++-+.+++.+||+.
T Consensus        53 ~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~--~vpISIDT--~~~~Va~aAl~aGa~i  128 (314)
T 3tr9_A           53 RTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF--PQLISVDT--SRPRVMREAVNTGADM  128 (314)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC--CSEEEEEC--SCHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC--CCeEEEeC--CCHHHHHHHHHcCCCE
Confidence            44677899999999998643222111    111111       223333333  68888876  7889999999999988


Q ss_pred             EEEcH
Q psy16780        145 VFVGR  149 (202)
Q Consensus       145 V~ig~  149 (202)
                      |-=-+
T Consensus       129 INDVs  133 (314)
T 3tr9_A          129 INDQR  133 (314)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            75544

>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A

Probab=87.03  E-value=3.9  Score=35.11  Aligned_cols=100  Identities=21%  Similarity=0.200  Sum_probs=62.3

Q ss_pred             cHHHHHHHHHh--cCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC-----------C---ccchHHHHHHHH--
Q psy16780         52 NWSDVTWLKTI--TKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD-----------Y---VPASIEALPEIA--  113 (202)
Q Consensus        52 ~~~~i~~i~~~--~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~-----------~---~~~~~~~l~~i~--  113 (202)
                      +|+=++.++..  -++++-+=.+++...+..+.++|+..|...-  ||-.+           .   ..+....+.++.  
T Consensus       163 T~eGi~A~~~L~~eGI~vN~TliFS~~Qa~~aAeAGa~~ISPFV--GRidD~~~~~~~~~~~~~~~~~~Gv~~v~~i~~~  240 (345)
T 3tkf_A          163 TWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFV--GRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKL  240 (345)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEEECCHHHHHHHHHTTCSEEEEBS--HHHHHHHHHHTTCSSCCCGGGCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEeec--chHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence            35544444432  2677777777888999999999998887631  22111           0   012233344443  


Q ss_pred             -HHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        114 -KAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       114 -~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                       +..+.+.-|++ -.+|+..++..  .+|||.+-+.-.++..+.
T Consensus       241 yk~~g~~T~Vl~-ASfRn~~~V~a--LaG~d~vTipp~lL~~L~  281 (345)
T 3tkf_A          241 YKSHGFKTIVMG-ASFRNVEQVIA--LAGCDALTISPVLLEELK  281 (345)
T ss_dssp             HHHHTCCSEEEE-BCCSSHHHHHT--TTTSSEEEECHHHHHHHH
T ss_pred             HHHcCCCCEEEe-CCCCCHHHHHH--HhCCCEEECCHHHHHHHH
Confidence             33333455555 55999999984  469999999988887654

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=86.90  E-value=2.1  Score=35.12  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCC----E--EEEcHHHHHHhh
Q psy16780         84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAK----M--VFVGRPALWGLA  156 (202)
Q Consensus        84 aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd----~--V~ig~~~l~~~~  156 (202)
                      +|.++++++.+.          .+.+..+++.+++ .+++ +=||+- +.+..+++..|+|    .  +.+||+++.+  
T Consensus       169 ~g~~GvV~~at~----------~~e~~~ir~~~~~-~~~l-~PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A--  234 (255)
T 3qw3_A          169 NGNVGLVVGATD----------PVALARVRARAPT-LWFL-VPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARA--  234 (255)
T ss_dssp             GSCEEEEECSSC----------HHHHHHHHHHCSS-CCEE-ECCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTS--
T ss_pred             hCCeEEEECCCC----------HHHHHHHHHHCCC-CeEE-ECCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCC--
Confidence            789999886431          2345566666643 4554 455653 3456677778998    3  9999999964  


Q ss_pred             hcChHHHHHHHHHHHHHHHHH
Q psy16780        157 HSGKSGVRKVLDILINEFDQA  177 (202)
Q Consensus       157 ~~G~~~v~~~i~~l~~~L~~~  177 (202)
                       ..+   .+..+.++++++..
T Consensus       235 -~dp---~~aa~~i~~~i~~~  251 (255)
T 3qw3_A          235 -ADP---RAAAKELCEEINAI  251 (255)
T ss_dssp             -SCH---HHHHHHHHHHHHHH
T ss_pred             -CCH---HHHHHHHHHHHHHH
Confidence             222   34556666666654

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=86.70  E-value=6  Score=32.76  Aligned_cols=68  Identities=21%  Similarity=0.244  Sum_probs=40.7

Q ss_pred             HHHHHHHcCCcEEEeeccCcCCCCCccc---hHHHHHHHHHHh-CCCcEEEEecCCCCHHHHHHHHHhCCCEEE
Q psy16780         77 DAKIGVEMGASAIMVSNHGGRQLDYVPA---SIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus        77 ~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~l~~i~~~~-~~~ipiia~GGI~~~~D~~kal~~GAd~V~  146 (202)
                      .++.+.+.|||.|+|++-.-+......+   .++-+..+.+.+ ..++||-.+.  +.++-+.+++.+||+.+-
T Consensus        35 ~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT--~~~~Va~~al~aGa~iIN  106 (270)
T 4hb7_A           35 RVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDT--FRSEVAEACLKLGVDMIN  106 (270)
T ss_dssp             HHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEEC--SCHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEEEC--CCHHHHHHHHHhccceec
Confidence            3677899999999997632221111111   122111122233 2357776665  788888899999998875

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=86.67  E-value=3.1  Score=34.62  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=44.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccc---hHH----HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA---SIE----ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~----~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.++...+.|||.|+|++-+.+......+   .++    .+..+++.+  ++||..+.  .+++-+..++.+||+.|-=-
T Consensus        42 ~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~--~~piSIDT--~~~~va~aAl~aGa~iINdv  117 (282)
T 1aj0_A           42 KHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF--EVWISVDT--SKPEVIRESAKVGAHIINDI  117 (282)
T ss_dssp             HHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC--CCEEEEEC--CCHHHHHHHHHTTCCEEEET
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc--CCeEEEeC--CCHHHHHHHHHcCCCEEEEC
Confidence            33677889999999998743221111111   122    222333333  68887766  78888889999999988765


Q ss_pred             H
Q psy16780        149 R  149 (202)
Q Consensus       149 ~  149 (202)
                      +
T Consensus       118 s  118 (282)
T 1aj0_A          118 R  118 (282)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=86.67  E-value=0.95  Score=37.54  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=35.8

Q ss_pred             cHHHHHHHHH-hcC-CCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKT-ITK-LPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~-~~~-~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++.+++ ..+ +||++-. +.+++++..+.+.|+|+|.+..
T Consensus       164 ~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgS  208 (268)
T 2htm_A          164 TRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNT  208 (268)
T ss_dssp             THHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred             CHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence            3567899998 678 9999875 4799999999999999999965

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=86.66  E-value=3.7  Score=34.00  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-CH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-YG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~~  131 (202)
                      ++.++++++..++|++. .+.+++.+..+.+. +|.+.+..+.       ..+...+.++.+ .  ..||+.+-|.. +.
T Consensus        91 l~~l~~~~~~~Gl~~~t-e~~d~~~~~~l~~~-vd~~kIgs~~-------~~n~~ll~~~a~-~--~kPV~lk~G~~~t~  158 (276)
T 1vs1_A           91 LKLLRRAGDEAGLPVVT-EVLDPRHVETVSRY-ADMLQIGARN-------MQNFPLLREVGR-S--GKPVLLKRGFGNTV  158 (276)
T ss_dssp             HHHHHHHHHHHTCCEEE-ECCCGGGHHHHHHH-CSEEEECGGG-------TTCHHHHHHHHH-H--TCCEEEECCTTCCH
T ss_pred             HHHHHHHHHHcCCcEEE-ecCCHHHHHHHHHh-CCeEEECccc-------ccCHHHHHHHHc-c--CCeEEEcCCCCCCH
Confidence            45677777788999986 67888888888888 9999996532       224456666653 3  78999999997 98


Q ss_pred             HHHHHHHH----hCCC
Q psy16780        132 TDVFKALA----LGAK  143 (202)
Q Consensus       132 ~D~~kal~----~GAd  143 (202)
                      +++..++.    .|..
T Consensus       159 ~ei~~Ave~i~~~Gn~  174 (276)
T 1vs1_A          159 EELLAAAEYILLEGNW  174 (276)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            98887765    4763

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A

Probab=86.66  E-value=2.3  Score=36.93  Aligned_cols=91  Identities=11%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             CccccHHHHHHHHHhc-CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         48 DETINWSDVTWLKTIT-KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~-~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      +++...+.++++|+.+ ++++.+-.-  .+.+++    +.+.+.|+..|.=          ..++++.+.++++..  .+
T Consensus       195 ~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEq----------P~~d~~~~~~l~~~~--~i  262 (398)
T 4dye_A          195 DCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLED----------PCVGIEGMAQVKAKV--RI  262 (398)
T ss_dssp             CHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC----------CSSHHHHHHHHHHHC--CS
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEEcC----------CCCCHHHHHHHHhhC--CC
Confidence            4555667888888886 566776532  455554    4455667666641          112566777887776  79


Q ss_pred             EEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      ||.++.-+.+..|+.+++..| +|.|++--.
T Consensus       263 PIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~  293 (398)
T 4dye_A          263 PLCTNMCVVRFEDFAPAMRLNAVDVIHGDVY  293 (398)
T ss_dssp             CEEESSSCCSGGGHHHHHHTTCCSEEEECHH
T ss_pred             CEEeCCcCCCHHHHHHHHHhCCCCEEEeCcc
Confidence            999999999999999999987 899988654

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=86.52  E-value=8.2  Score=31.82  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=28.1

Q ss_pred             HHHHHHHhc--CCCEEEEec-cC----HHHHHHHHHcCCcEEEeec
Q psy16780         55 DVTWLKTIT--KLPIVLKGI-LT----AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        55 ~i~~i~~~~--~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~   93 (202)
                      +++.+.+.+  ++||++... .+    .+.++.+.++|+|++.+..
T Consensus        59 v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~  104 (291)
T 3tak_A           59 VIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVT  104 (291)
T ss_dssp             HHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence            555555554  689999765 22    4557889999999998863

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=86.45  E-value=6.6  Score=32.71  Aligned_cols=92  Identities=11%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-c---CC-CCCccchHHH-HHHHHHHh-CCCcEEEEec-
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-G---RQ-LDYVPASIEA-LPEIAKAV-GHKVDVYLDG-  126 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g---~~-~~~~~~~~~~-l~~i~~~~-~~~ipiia~G-  126 (202)
                      .++++++. +-|+.+=...+.-.|+.+.++|+|+|-+++.+ +   .. .|.++.+++. +..++... ..++||+++. 
T Consensus        12 ~lr~l~~~-~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d   90 (287)
T 3b8i_A           12 MFRALLDS-SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADAD   90 (287)
T ss_dssp             HHHHHHHS-SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECT
T ss_pred             HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence            34444432 56887767789999999999999999998752 1   11 2334445543 33332222 1278999976 


Q ss_pred             -CCCCHHHHHH----HHHhCCCEEEE
Q psy16780        127 -GVRYGTDVFK----ALALGAKMVFV  147 (202)
Q Consensus       127 -GI~~~~D~~k----al~~GAd~V~i  147 (202)
                       |-.+++++.+    .+.+||++|-+
T Consensus        91 ~Gyg~~~~~~~~v~~l~~aGa~gv~i  116 (287)
T 3b8i_A           91 HGYGNALNVMRTVVELERAGIAALTI  116 (287)
T ss_dssp             TCSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence             4447666543    44589999987

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=86.44  E-value=1.1  Score=36.60  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=34.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.+++||.+..- .+++.++. +.+|+|+++|++
T Consensus       194 ~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGS  235 (262)
T 2ekc_A          194 IKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGS  235 (262)
T ss_dssp             HHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECH
T ss_pred             HHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECH
Confidence            357899999989999999865 56999999 688999999965

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=86.39  E-value=3.1  Score=36.17  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +++.+..+++..  ++||+.= |+.+.+|+.++..+|||+|.++
T Consensus       240 ~~~~i~~lr~~~--~~PvivK-gv~~~e~A~~a~~aGad~I~vs  280 (392)
T 2nzl_A          240 SWEDIKWLRRLT--SLPIVAK-GILRGDDAREAVKHGLNGILVS  280 (392)
T ss_dssp             CHHHHHHHC--C--CSCEEEE-EECCHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHHhh--CCCEEEE-ecCCHHHHHHHHHcCCCEEEeC
Confidence            344455555544  6898886 4689999999999999999994

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1

Probab=86.36  E-value=3.2  Score=36.15  Aligned_cols=92  Identities=13%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             HHHHHHHHhcC--CCEEEEeccCH-HHHHHHHH------cCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---C-CCc
Q psy16780         54 SDVTWLKTITK--LPIVLKGILTA-EDAKIGVE------MGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---G-HKV  120 (202)
Q Consensus        54 ~~i~~i~~~~~--~Pv~vK~~~~~-~~a~~l~~------aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i  120 (202)
                      +.++..++..+  .|+++ ++-+. ..+..+++      .|+|+|.+++.+.+.   + ...+...++++.+   + +++
T Consensus       195 ~A~~~~~~~~p~~~~~~v-lvDT~d~~~~~al~~~~~~~~~~d~IrlDs~~~~~---g-d~~~~v~~~r~~ld~~G~~~~  269 (395)
T 2i14_A          195 KAWKYFDEVIEEEVPRIA-LVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRR---G-NFRKIIEEVRWELKVRGYDWV  269 (395)
T ss_dssp             HHHHHHHHHSCSSSCCEE-ECCSSBCHHHHHHHHHTTTGGGCCEEEECCCTTTC---S-CHHHHHHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHhCCCCccEEE-EeccchHHHHHHHHHHHHhccCCcEEEeCCCCCCc---c-cHHHHHHHHHHHHHhCCCCce
Confidence            46666666664  44554 55332 12222333      789999998753110   0 1222334443322   1 368


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .|++|||| +.+.+.+..+. .|.+++|+.+.
T Consensus       270 ~I~aSggl-~~~~i~~l~~~-vD~~gvGt~l~  299 (395)
T 2i14_A          270 KIFVSGGL-DEEKIKEIVDV-VDAFGVGGAIA  299 (395)
T ss_dssp             EEEEESSC-CHHHHHTTGGG-CSEEEECHHHH
T ss_pred             EEEEECCC-CHHHHHHHHHh-CCEEEeCcccC
Confidence            99999998 67777777778 99999999776

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=86.36  E-value=4.6  Score=34.39  Aligned_cols=83  Identities=25%  Similarity=0.325  Sum_probs=56.2

Q ss_pred             HHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--------CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         59 LKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--------GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        59 i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--------gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      +.+..+.-||+ -+.+.+.|+.+.++|+++|.+-+.        +|.   ....+.+.+.++++++  ++||++==-|..
T Consensus        12 ~~~~~kgGvI~-d~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~---arm~~p~~i~~I~~av--~iPV~~K~rig~   85 (330)
T 2yzr_A           12 FAKMVKHGVVM-DVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPALIEEIMDAV--SIPVMAKCRIGH   85 (330)
T ss_dssp             HHHTTTTSEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCC---CCCCCHHHHHHHHHHC--SSCEEEEEETTC
T ss_pred             HHHHccCCcee-eCCHHHHHHHHHHcCCCEEEecCCccccccCCcch---hhcCCHHHHHHHHHhc--CCCeEEEEeecc
Confidence            33445667887 667899999999999999954321        221   1134677888888888  899998554533


Q ss_pred             HHHHHHHHHhCCCEEEE
Q psy16780        131 GTDVFKALALGAKMVFV  147 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~i  147 (202)
                      -.++.-.-++|||+|-.
T Consensus        86 ~~e~qilea~GaD~Id~  102 (330)
T 2yzr_A           86 TTEALVLEAIGVDMIDE  102 (330)
T ss_dssp             HHHHHHHHHTTCSEEEE
T ss_pred             hHHHHHHHHcCCCEEeh
Confidence            44433333489999875

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=86.35  E-value=0.46  Score=37.42  Aligned_cols=41  Identities=20%  Similarity=0.131  Sum_probs=32.9

Q ss_pred             ccc-cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         49 ETI-NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        49 ~~~-~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      |.. .-++++++   +++|+++.+- .+.|+++. +++||++|+.++
T Consensus       136 Pg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~  178 (188)
T 1vkf_A          136 PGAVAPKVARKI---PGRTVIAAGLVETEEEARE-ILKHVSAISTSS  178 (188)
T ss_dssp             SGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-HTTTSSEEEECC
T ss_pred             CCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCC
Confidence            444 34567666   6899999864 79999999 999999998876

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=86.34  E-value=9.1  Score=31.88  Aligned_cols=89  Identities=19%  Similarity=0.110  Sum_probs=57.3

Q ss_pred             HHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-c--CC-CCCccchHHH-H---HHHHHHhCCCcEEEEec-
Q psy16780         56 VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-G--RQ-LDYVPASIEA-L---PEIAKAVGHKVDVYLDG-  126 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g--~~-~~~~~~~~~~-l---~~i~~~~~~~ipiia~G-  126 (202)
                      ++++.+. +-|+.+=...+.-.|+.+.++|+|+|-+++.+ +  .. .|.++.+++. +   +.+.+..  ++||+++. 
T Consensus         7 lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~d   83 (290)
T 2hjp_A            7 LRAALDS-GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADID   83 (290)
T ss_dssp             HHHHHHH-CCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTC--SSCEEEECT
T ss_pred             HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEECC
Confidence            4444432 56887767789999999999999999998631 1  11 1334445443 3   3333333  79999966 


Q ss_pred             -CCCCHHHHH----HHHHhCCCEEEE
Q psy16780        127 -GVRYGTDVF----KALALGAKMVFV  147 (202)
Q Consensus       127 -GI~~~~D~~----kal~~GAd~V~i  147 (202)
                       |-.++.++.    +.+.+||++|-+
T Consensus        84 ~Gyg~~~~~~~~v~~l~~aGa~gv~i  109 (290)
T 2hjp_A           84 TGFGNAVNVHYVVPQYEAAGASAIVM  109 (290)
T ss_dssp             TTTSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence             444666554    344589999876

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=86.11  E-value=9.1  Score=32.82  Aligned_cols=129  Identities=12%  Similarity=0.073  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHH----HHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAK----IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~----~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G  126 (202)
                      .+..|+++.+ ++.||++|-. .+.++..    .+.+.|-+.+.+....+........++..++.+++.+ +.+||-.|+
T Consensus       124 N~pLL~~va~-~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~f-p~lpVG~Sd  201 (350)
T 3g8r_A          124 DWPLLERIAR-SDKPVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQY-AGVRIGYST  201 (350)
T ss_dssp             CHHHHHHHHT-SCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHC-TTSEEEEEE
T ss_pred             CHHHHHHHHh-hCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHC-CCCCEEcCC
Confidence            3567777764 5899999965 4665543    3445677644443321111111123455677776665 358987774


Q ss_pred             CCC--CHHHHHHHHHhCCCEEEEcHHHHHHh--hhcChHH-HHHHHHHHHHHHHHHHHHhCCC
Q psy16780        127 GVR--YGTDVFKALALGAKMVFVGRPALWGL--AHSGKSG-VRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       127 GI~--~~~D~~kal~~GAd~V~ig~~~l~~~--~~~G~~~-v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      --.  ...-+..|+++||+.+-.  .|--.-  ...+..+ --+-+..|.++++..-..+|..
T Consensus       202 Ht~g~~~~~~~AAvAlGA~vIEk--H~tldr~~g~D~~~Sl~P~ef~~lv~~ir~i~~alG~~  262 (350)
T 3g8r_A          202 HEDPDLMEPIMLAVAQGATVFEK--HVGLPTDQYGINNYSANPEQVRRWLAAAARALAMLGDG  262 (350)
T ss_dssp             CCCSSCCHHHHHHHHTTCCEEEE--EBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             CCCCCccHHHHHHHHcCCCEEEE--ecCcccCCCCcccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            211  012345788999974432  211100  0111100 0134567777778888888863

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=86.02  E-value=2.4  Score=34.87  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-CH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-YG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~~  131 (202)
                      ++.++++++..++|++. .+.+++.+..+.+. +|.+.+..+.       ..+...++++++   ...||+.+-|.. +.
T Consensus        76 l~~l~~~~~~~Gl~~~t-e~~d~~~~~~l~~~-vd~~kIga~~-------~~n~~ll~~~a~---~~kPV~lk~G~~~t~  143 (262)
T 1zco_A           76 LRWMREAADEYGLVTVT-EVMDTRHVELVAKY-SDILQIGARN-------SQNFELLKEVGK---VENPVLLKRGMGNTI  143 (262)
T ss_dssp             HHHHHHHHHHHTCEEEE-ECCCGGGHHHHHHH-CSEEEECGGG-------TTCHHHHHHHTT---SSSCEEEECCTTCCH
T ss_pred             HHHHHHHHHHcCCcEEE-eeCCHHhHHHHHhh-CCEEEECccc-------ccCHHHHHHHHh---cCCcEEEecCCCCCH
Confidence            44667777778999886 67788888888888 9999996532       123445566543   379999999997 99


Q ss_pred             HHHHHHHH
Q psy16780        132 TDVFKALA  139 (202)
Q Consensus       132 ~D~~kal~  139 (202)
                      +++..+++
T Consensus       144 ~e~~~Av~  151 (262)
T 1zco_A          144 QELLYSAE  151 (262)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998885

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=85.93  E-value=10  Score=29.70  Aligned_cols=78  Identities=19%  Similarity=0.055  Sum_probs=51.5

Q ss_pred             EEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH-hCCCE
Q psy16780         68 VLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA-LGAKM  144 (202)
Q Consensus        68 ~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~-~GAd~  144 (202)
                      .+|++  .++++++.+.++|+|++=+.-....   ....+.+...++.+.+++.+..++.===.+.+.+.+... ++.|+
T Consensus         2 ~vKICGit~~eda~~a~~~GaD~iGfif~~~S---pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~   78 (203)
T 1v5x_A            2 RVKICGITRLEDALLAEALGAFALGFVLAPGS---RRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQV   78 (203)
T ss_dssp             EEEECCCCCHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSE
T ss_pred             cEEEcCCCcHHHHHHHHHcCCCEEEEEecCCC---CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCE
Confidence            47876  6899999999999999876532111   011244556667666655555555422246777777765 69999


Q ss_pred             EEEc
Q psy16780        145 VFVG  148 (202)
Q Consensus       145 V~ig  148 (202)
                      |++-
T Consensus        79 vQLH   82 (203)
T 1v5x_A           79 AQLH   82 (203)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=85.93  E-value=0.8  Score=37.64  Aligned_cols=41  Identities=22%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++|+.++.||.+... .++++++.+.+ ++|+++|++
T Consensus       187 ~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGS  228 (252)
T 3tha_A          187 LQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGT  228 (252)
T ss_dssp             HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECH
T ss_pred             HHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECH
Confidence            356899999999999999864 68999998876 699999965

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=85.89  E-value=3.4  Score=35.06  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=50.1

Q ss_pred             HHHHHHHHcCCcEEEee---ccCcCCCCCcc---chHHHHHHHHHHhCCCcEEEEec--CCCCHHHHHHHHHhCCCEEEE
Q psy16780         76 EDAKIGVEMGASAIMVS---NHGGRQLDYVP---ASIEALPEIAKAVGHKVDVYLDG--GVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~---~~gg~~~~~~~---~~~~~l~~i~~~~~~~ipiia~G--GI~~~~D~~kal~~GAd~V~i  147 (202)
                      +.++.+.++|+|.|.++   |.++.....++   .+++.++.+++.. .++++.+-+  |.....++.++.++|++.|-+
T Consensus        34 ~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~-~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I  112 (345)
T 1nvm_A           34 AIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEI-SHAQIATLLLPGIGSVHDLKNAYQAGARVVRV  112 (345)
T ss_dssp             HHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTC-SSSEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhC-CCCEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence            55788889999999995   12222222232   3556666666543 367887764  455789999999999999888


Q ss_pred             cH
Q psy16780        148 GR  149 (202)
Q Consensus       148 g~  149 (202)
                      ..
T Consensus       113 ~~  114 (345)
T 1nvm_A          113 AT  114 (345)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=85.78  E-value=1.3  Score=36.17  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCC-CcEEEEecCCCCHHHHHHH----HHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGH-KVDVYLDGGVRYGTDVFKA----LALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~-~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~  149 (202)
                      .+++.+++.|||.|++.-.-|.-.++... -.+-+..+++..++ -+++|..-|.-+.+.+.++    ..+|||+|-.++
T Consensus        99 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTST  178 (239)
T 3ngj_A           99 YETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTST  178 (239)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             HHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCC
Confidence            56788999999999976432211111111 12234555555532 3788887777888889888    668999999886


Q ss_pred             HH
Q psy16780        150 PA  151 (202)
Q Consensus       150 ~~  151 (202)
                      .|
T Consensus       179 Gf  180 (239)
T 3ngj_A          179 GF  180 (239)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=85.59  E-value=1.4  Score=37.43  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=36.8

Q ss_pred             cccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcC-CcEEEee
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMG-ASAIMVS   92 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG-~d~I~v~   92 (202)
                      ...++.++++++.+++||+.-+. .++++++.+++.| +|.|.++
T Consensus       263 ~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iG  307 (340)
T 3gr7_A          263 GYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLG  307 (340)
T ss_dssp             TTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEEC
T ss_pred             cccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEec
Confidence            34678999999999999997655 6899999999999 9999883

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=85.57  E-value=11  Score=29.64  Aligned_cols=78  Identities=18%  Similarity=-0.055  Sum_probs=51.6

Q ss_pred             EEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH-hCCCE
Q psy16780         68 VLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA-LGAKM  144 (202)
Q Consensus        68 ~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~-~GAd~  144 (202)
                      .+|++  .++++++.+.++|+|++=+.-....   ....+.+...++.+.+++.+..++.===.+.+.+.+... ++.|+
T Consensus         3 ~vKICGit~~eda~~a~~~GaD~iGfif~~~S---pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~   79 (205)
T 1nsj_A            3 RVKICGITNLEDALFSVESGADAVGFVFYPKS---KRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNA   79 (205)
T ss_dssp             EEEECCCCSHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSE
T ss_pred             cEEECCCCcHHHHHHHHHcCCCEEEEEecCCC---CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCE
Confidence            47877  6899999999999999876532111   011244556667666655555554422246777777765 69999


Q ss_pred             EEEc
Q psy16780        145 VFVG  148 (202)
Q Consensus       145 V~ig  148 (202)
                      |++-
T Consensus        80 vQLH   83 (205)
T 1nsj_A           80 VQLH   83 (205)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9983

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=85.50  E-value=0.55  Score=36.95  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=37.3

Q ss_pred             cccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeec
Q psy16780         50 TINWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ...++.++++++.++ +||++-+-.+++.+..+.++|+|+|.++.
T Consensus       157 ~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs  201 (227)
T 2tps_A          157 VQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMIS  201 (227)
T ss_dssp             CCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESH
T ss_pred             ccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhH
Confidence            346889999998887 99998776778888889999999999965

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=85.35  E-value=5  Score=33.54  Aligned_cols=73  Identities=16%  Similarity=0.093  Sum_probs=44.3

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccc---hHHHHHHHHHHhC-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA---SIEALPEIAKAVG-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~l~~i~~~~~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      +.++...+.|||.|+|++-+.+......+   .++-+..+.+.+. .++||..+.  .+++-+.+++.+||+.|-=-+.
T Consensus        50 ~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiSIDT--~~~~Va~aAl~aGa~iINdVsg  126 (294)
T 2y5s_A           50 RRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLSIDT--YKPAVMRAALAAGADLINDIWG  126 (294)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEEEEC--CCHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEC--CCHHHHHHHHHcCCCEEEECCC
Confidence            44678899999999998732221111111   1221111222222 268888766  6888899999999988865443

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=85.08  E-value=0.89  Score=39.29  Aligned_cols=42  Identities=21%  Similarity=0.348  Sum_probs=36.1

Q ss_pred             cHHHHHHHHHhc--CCCEEEE-eccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT--KLPIVLK-GILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.|+++++.+  ++||+.= ++.+.+++..++++|||+|.+..
T Consensus       284 a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgr  328 (367)
T 3zwt_A          284 STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT  328 (367)
T ss_dssp             HHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             HHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence            568999999999  8999854 45899999999999999999853

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=84.99  E-value=1.2  Score=37.23  Aligned_cols=68  Identities=22%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe-cCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD-GGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~-GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      +.++.+.++|||.|.+-+         .++.+.+.++.+.+  ++|++.. +|-...-+..+.-++|.+.|..+...+++
T Consensus       172 ~Ra~ay~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ra  240 (287)
T 3b8i_A          172 QRTLAYQEAGADGICLVG---------VRDFAHLEAIAEHL--HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFA  240 (287)
T ss_dssp             HHHHHHHHTTCSEEEEEC---------CCSHHHHHHHHTTC--CSCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHHHH
T ss_pred             HHHHHHHHcCCCEEEecC---------CCCHHHHHHHHHhC--CCCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence            456788999999999853         34567778887777  6888843 33332334556667999999999988764

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=84.94  E-value=14  Score=30.20  Aligned_cols=49  Identities=12%  Similarity=0.091  Sum_probs=36.6

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEec-------cC-------HHHHHHHHHcCCcEEEeec
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGI-------LT-------AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-------~~-------~~~a~~l~~aG~d~I~v~~   93 (202)
                      .+|-...+...++.+++.+++||.+=++       .+       .++++.+.++|+|+|+++-
T Consensus        32 ~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~   94 (256)
T 1twd_A           32 KEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGV   94 (256)
T ss_dssp             GGTCBCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             ccCCCCCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence            4455555677888889999999987554       12       2567889999999999864

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=84.77  E-value=4.1  Score=34.81  Aligned_cols=83  Identities=7%  Similarity=-0.052  Sum_probs=56.9

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcC-CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMG-ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .++..+++++.+++||+.-+. .++++++.+++.| +|.|.+.-.    .-++......+..+++..  .++++..+..-
T Consensus       225 ~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~----~~GGit~~~~i~~~A~~~--g~~~~~~~~~e  298 (379)
T 2rdx_A          225 SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKIS----NLGGLSKARRTRDFLIDN--RMPVVAEDSWG  298 (379)
T ss_dssp             SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETT----TTTSHHHHHHHHHHHHHT--TCCEEEECSBC
T ss_pred             CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecc----ccCCHHHHHHHHHHHHHc--CCeEEEeeccC
Confidence            788999999999999998776 5788998887665 898887432    112333344445555555  78888876666


Q ss_pred             CHHHHHHHHHh
Q psy16780        130 YGTDVFKALAL  140 (202)
Q Consensus       130 ~~~D~~kal~~  140 (202)
                      ++.-...++.+
T Consensus       299 s~i~~~a~~~l  309 (379)
T 2rdx_A          299 GEIASAAVAHF  309 (379)
T ss_dssp             SHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            66555544443

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=84.52  E-value=6.7  Score=32.93  Aligned_cols=83  Identities=18%  Similarity=0.113  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-CH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-YG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~~  131 (202)
                      .+.+++++++.++|++- .+.+++.+..+.+. +|.+.+....       ..+.+.++++.+ .  ..||+.+-|.. +.
T Consensus       101 L~~L~~~~~e~GLpv~T-ev~D~~~v~~l~~~-vd~lkIgA~~-------~~n~~LLr~va~-~--gkPVilK~Gms~t~  168 (298)
T 3fs2_A          101 LEVFSDLKKEYGFPVLT-DIHTEEQCAAVAPV-VDVLQIPAFL-------CRQTDLLIAAAR-T--GRVVNVKKGQFLAP  168 (298)
T ss_dssp             HHHHHHHHHHHCCCEEE-ECCSHHHHHHHTTT-CSEEEECGGG-------TTCHHHHHHHHH-T--TSEEEEECCTTCCG
T ss_pred             HHHHHHHHHhcCCeEEE-EeCCHHHHHHHHhh-CCEEEECccc-------cCCHHHHHHHHc-c--CCcEEEeCCCCCCH
Confidence            34667777778999885 67899999999888 9999986542       224556666643 3  78999999995 88


Q ss_pred             HHHHHHHH----hCCCEEEE
Q psy16780        132 TDVFKALA----LGAKMVFV  147 (202)
Q Consensus       132 ~D~~kal~----~GAd~V~i  147 (202)
                      +|+..+.+    .|.+-|.+
T Consensus       169 ~ei~~ave~i~~~Gn~~iiL  188 (298)
T 3fs2_A          169 WDMKNVLAKITESGNPNVLA  188 (298)
T ss_dssp             GGHHHHHHHHHTTTCCCEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEE
Confidence            77766554    47654544

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=84.44  E-value=3.8  Score=33.77  Aligned_cols=62  Identities=21%  Similarity=0.228  Sum_probs=42.1

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHH----HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh--CCCEEE
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIE----ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL--GAKMVF  146 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~----~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~--GAd~V~  146 (202)
                      +.++...+.|||.|+|.+...     ....++    .+..+++..  ++||..++  .+++-+.+++.+  |++.+-
T Consensus        38 ~~a~~~v~~GAdiIDIg~~s~-----~~eE~~rv~~vi~~l~~~~--~~pisIDT--~~~~v~~aal~a~~Ga~iIN  105 (271)
T 2yci_X           38 EWARRQAEKGAHYLDVNTGPT-----ADDPVRVMEWLVKTIQEVV--DLPCCLDS--TNPDAIEAGLKVHRGHAMIN  105 (271)
T ss_dssp             HHHHHHHHTTCSEEEEECCSC-----SSCHHHHHHHHHHHHHHHC--CCCEEEEC--SCHHHHHHHHHHCCSCCEEE
T ss_pred             HHHHHHHHCCCCEEEEcCCcC-----chhHHHHHHHHHHHHHHhC--CCeEEEeC--CCHHHHHHHHHhCCCCCEEE
Confidence            346778899999999976431     111222    234444444  78888877  488888888888  998886

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=84.36  E-value=8  Score=37.58  Aligned_cols=91  Identities=16%  Similarity=0.047  Sum_probs=55.7

Q ss_pred             HHHHHHHhc-CCCEEEEec--cCH----HHHHHHHHcCCcEEEeeccC-cC-CCC--Cc--cch----HHHHHHHHHHhC
Q psy16780         55 DVTWLKTIT-KLPIVLKGI--LTA----EDAKIGVEMGASAIMVSNHG-GR-QLD--YV--PAS----IEALPEIAKAVG  117 (202)
Q Consensus        55 ~i~~i~~~~-~~Pv~vK~~--~~~----~~a~~l~~aG~d~I~v~~~g-g~-~~~--~~--~~~----~~~l~~i~~~~~  117 (202)
                      .++++++.. +.|+++=+.  .++    +.++.+.++|+|+|.+.-.- -+ ...  +.  ...    .+.+..+++.+ 
T Consensus       624 ~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~-  702 (1025)
T 1gte_A          624 SVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV-  702 (1025)
T ss_dssp             HHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhh-
Confidence            456667655 678887552  334    44567778999999996421 11 000  11  012    23455555555 


Q ss_pred             CCcEEEE--ecCCCCHHHHHHHH-HhCCCEEEE
Q psy16780        118 HKVDVYL--DGGVRYGTDVFKAL-ALGAKMVFV  147 (202)
Q Consensus       118 ~~ipiia--~GGI~~~~D~~kal-~~GAd~V~i  147 (202)
                       ++||+.  +.++.+..++++++ +.|+|++.+
T Consensus       703 -~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v  734 (1025)
T 1gte_A          703 -QIPFFAKLTPNVTDIVSIARAAKEGGADGVTA  734 (1025)
T ss_dssp             -SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEE
T ss_pred             -CCceEEEeCCChHHHHHHHHHHHHcCCCEEEE
Confidence             688886  56677777766665 589999998

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=84.21  E-value=9.4  Score=31.85  Aligned_cols=90  Identities=21%  Similarity=0.108  Sum_probs=55.2

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-cCC---CCCccchHH----HHHHHHHHhCCCcEEEEec
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-GRQ---LDYVPASIE----ALPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g~~---~~~~~~~~~----~l~~i~~~~~~~ipiia~G  126 (202)
                      .++++.+ .+-|+.+=...+.-.|+.+.++|+|+|-+++.+ +..   .|.+..+++    .++.+.+..  ++||+++.
T Consensus        10 ~lr~l~~-~~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~   86 (295)
T 1s2w_A           10 QLKQMLN-SKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDA   86 (295)
T ss_dssp             HHHHHHH-SSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEEC
T ss_pred             HHHHHHh-CCCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEecC
Confidence            3444443 256887777789999999999999999998631 111   122233333    233444444  79999975


Q ss_pred             --CCCCHHHHH----HHHHhCCCEEEE
Q psy16780        127 --GVRYGTDVF----KALALGAKMVFV  147 (202)
Q Consensus       127 --GI~~~~D~~----kal~~GAd~V~i  147 (202)
                        |-.+..++.    +.+.+||.+|-+
T Consensus        87 d~Gyg~~~~v~~~v~~l~~aGaagv~i  113 (295)
T 1s2w_A           87 DTGYGNFNNARRLVRKLEDRGVAGACL  113 (295)
T ss_dssp             CSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence              445655554    344589999876

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=84.20  E-value=1.3  Score=37.71  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=35.8

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEec-cCHHHHHHHHHcCCcEEEee
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGI-LTAEDAKIGVEMGASAIMVS   92 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~   92 (202)
                      ..|+.++++++.+ ++||++-+. .+++++..+++ |+|+|.++
T Consensus       183 ~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG  225 (350)
T 3b0p_A          183 LRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG  225 (350)
T ss_dssp             CCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred             ccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence            4689999999998 899997654 78999999998 99999885

>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}

Probab=84.17  E-value=8.8  Score=32.72  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             cHHHHHHHHHh-c--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC------------ccchHHHHHHH---H
Q psy16780         52 NWSDVTWLKTI-T--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY------------VPASIEALPEI---A  113 (202)
Q Consensus        52 ~~~~i~~i~~~-~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~------------~~~~~~~l~~i---~  113 (202)
                      +|+=|+.++.. .  ++++-+=++++...+..+.++|+..|...  -||-.++            +.+....+..+   .
T Consensus       148 T~eGi~A~~~L~~~eGI~vNvTLiFS~~Qa~aaa~AGa~~iSpF--VgRidd~~~~~~~~~~~~~~d~Gv~~v~~iy~~y  225 (339)
T 3cq0_A          148 TWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPF--VGRIMDFYKALSGKDYTAETDPGVLSVKKIYSYY  225 (339)
T ss_dssp             SHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHTTCSEEEEB--SHHHHHHHHHC---CCCTTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCceeEeeeCCHHHHHHHHHcCCcEEEec--ccHHHHHhhhhcccccccccChHHHHHHHHHHHH
Confidence            35545544443 2  67777777788888888899998877653  2221110            11123333333   3


Q ss_pred             HHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        114 KAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       114 ~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      +....+.-|++ -.+|+..++..  .+|+|.+-+.-.++..+.
T Consensus       226 ~~~~~~T~v~~-AS~r~~~~V~~--LaG~d~vTipp~~l~~l~  265 (339)
T 3cq0_A          226 KRHGYATEVMA-ASFRNLDELKA--LAGIDNMTLPLNLLEQLY  265 (339)
T ss_dssp             HHHTCCCEEEE-BCCCSHHHHHH--HTTSSEEEEEHHHHHHHH
T ss_pred             HHcCCCcEEEe-cCCCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence            33333454555 56999999997  579999999988887654

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=84.16  E-value=13  Score=30.33  Aligned_cols=90  Identities=20%  Similarity=0.157  Sum_probs=58.1

Q ss_pred             HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcC--C-CCCccchHHH----HHHHHHHhCCCcEEEEec
Q psy16780         55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGR--Q-LDYVPASIEA----LPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~--~-~~~~~~~~~~----l~~i~~~~~~~ipiia~G  126 (202)
                      .++++++. +-|+.+=...+.-.|+.+.++|+|.|-+++. -+.  . .|..+.+++.    .+.+++..  ++||+++.
T Consensus        11 ~lr~l~~~-~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~--~~pviaD~   87 (255)
T 2qiw_A           11 KFASDHES-GKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV--SIPVSVDV   87 (255)
T ss_dssp             HHHHHHHT-CCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC--SSCEEEEC
T ss_pred             HHHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC--CCCEEecc
Confidence            34444432 5677765668899999999999999999863 111  1 1333444442    34455555  69999976


Q ss_pred             CCCC----HHHHHHHHHhCCCEEEE
Q psy16780        127 GVRY----GTDVFKALALGAKMVFV  147 (202)
Q Consensus       127 GI~~----~~D~~kal~~GAd~V~i  147 (202)
                      --..    ...+.+.+.+||++|-+
T Consensus        88 ~~Gyg~~~~~~~~~l~~aGa~gv~i  112 (255)
T 2qiw_A           88 ESGYGLSPADLIAQILEAGAVGINV  112 (255)
T ss_dssp             TTCTTCCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCcHHHHHHHHHHHcCCcEEEE
Confidence            3222    45566677789999976

>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1

Probab=84.07  E-value=5.4  Score=33.98  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             cHHHHHHHHHh--cCCCEEEEeccCHHHHHHHHHcCCcEEEeec-c---------CcCCCCC-ccchHHHHHHHHH---H
Q psy16780         52 NWSDVTWLKTI--TKLPIVLKGILTAEDAKIGVEMGASAIMVSN-H---------GGRQLDY-VPASIEALPEIAK---A  115 (202)
Q Consensus        52 ~~~~i~~i~~~--~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~-~---------gg~~~~~-~~~~~~~l~~i~~---~  115 (202)
                      +|+=++.++..  -++++-+=.+++...+..+.++|+..|...- +         ++..... ..+....+.++.+   .
T Consensus       144 T~eGl~A~~~L~~~GI~~N~TliFS~~Qa~aaA~AGa~~ISPFVgRidd~~~~~~~~~~~~~~~~~Gv~~v~~i~~~y~~  223 (329)
T 3m16_A          144 TWEGIQAAKILEAEGIHCNLTLLFHFAQAQACAEAGTTLISPFVGRILDWYKANSGQSEYSASEDPGVVSVTEIYNFYKS  223 (329)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEBHHHHHHHHHTTSSCCCCCTTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEeehhHHHHHhhhcccccccccccCcHHHHHHHHHHHHHH
Confidence            35544444432  2677777777888899999999998887531 1         1111100 0122334444433   3


Q ss_pred             hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        116 VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       116 ~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                      .+.+.-|++ -.+|+..++..  .+|||.+-+.-.++..+.
T Consensus       224 ~g~~T~v~~-ASfRn~~~V~a--LaG~d~vTipp~~l~~l~  261 (329)
T 3m16_A          224 HGFKTIVMG-ASFRNTGEIEE--LAGCDRLTISPELLAQLE  261 (329)
T ss_dssp             TTCCCEEEE-BCCSCHHHHHT--TTTSSEEEECHHHHHHHH
T ss_pred             cCCCCEEEe-CCCCCHHHHHH--hhCCCEEECCHHHHHHHH
Confidence            333444444 56999999984  469999999988887654

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1

Probab=83.92  E-value=11  Score=31.20  Aligned_cols=95  Identities=19%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc---------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL---------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~---------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~  117 (202)
                      ..|+ ..+.|+-.+ ..++++..++..         -.+..+.+.+.|.+.|.+|...-     ..+.-+.++-+.++. 
T Consensus        78 l~~~-l~ekI~l~~-~~gV~v~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti-----~l~~~~~~~lI~~a~-  149 (276)
T 1u83_A           78 LTKD-LEEKISTLK-EHDITFFFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTL-----PMTNKEKAAYIADFS-  149 (276)
T ss_dssp             GCTT-HHHHHHHHH-HTTCEEEECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSS-----CCCHHHHHHHHHHHT-
T ss_pred             hhHH-HHHHHHHHH-HcCCeEeCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcc-----cCCHHHHHHHHHHHH-
Confidence            3444 444555444 459999998741         23567889999999999987421     122323333344433 


Q ss_pred             CCcEEEEecCCCCH------------HHHHHHHHhCCCEEEEcH
Q psy16780        118 HKVDVYLDGGVRYG------------TDVFKALALGAKMVFVGR  149 (202)
Q Consensus       118 ~~ipiia~GGI~~~------------~D~~kal~~GAd~V~ig~  149 (202)
                      +...|+..=|..++            +.+.+.|++||+.|++=.
T Consensus       150 ~~f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa  193 (276)
T 1u83_A          150 DEFLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA  193 (276)
T ss_dssp             TTSEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred             hhcEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence            34667776566555            344567779999999865

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=83.65  E-value=1.2  Score=37.72  Aligned_cols=42  Identities=14%  Similarity=0.106  Sum_probs=36.2

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcC-CcEEEee
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMG-ASAIMVS   92 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG-~d~I~v~   92 (202)
                      ..++.++++++.+++||+.-+. .+++++..+++.| +|.|.++
T Consensus       264 ~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iG  307 (338)
T 1z41_A          264 YQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIG  307 (338)
T ss_dssp             TTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEEC
T ss_pred             chHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeec
Confidence            4578899999999999997665 5899999999998 9999883

>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A

Probab=83.64  E-value=4.7  Score=34.71  Aligned_cols=91  Identities=15%  Similarity=0.030  Sum_probs=61.3

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHHHHHHH-Hc--CCc-EEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDAKIGV-EM--GAS-AIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a~~l~-~a--G~d-~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.++++|+.+  ++++.+...  .+++++..+. ..  +.+ .|.          ...++++.+.++++..  .
T Consensus       176 ~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~i~iE----------eP~~~~~~~~~l~~~~--~  243 (386)
T 3fv9_G          176 GPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLDIVLE----------APCASWAETKSLRARC--A  243 (386)
T ss_dssp             HHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCCCEEE----------CCCSSHHHHHHHHTTC--C
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCcEEe----------cCCCCHHHHHHHHhhC--C
Confidence            3455667888888876  567777753  5666664432 22  111 221          1123566667776655  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRP  150 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~  150 (202)
                      +||.++..+.+..|+.+++..| +|.|++--.
T Consensus       244 iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~  275 (386)
T 3fv9_G          244 LPLLLDELIQTETDLIAAIRDDLCDGVGLKVS  275 (386)
T ss_dssp             SCEEESTTCCSHHHHHHHHHTTCCSEEEEEHH
T ss_pred             CCEEeCCCcCCHHHHHHHHHhCCCCEEEECcc
Confidence            9999999999999999999986 899988643

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=83.61  E-value=0.79  Score=39.31  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHhc--CCCEEEE-eccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT--KLPIVLK-GILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.+.++++.+  ++||+.= ++.+.+++.+++.+|||+|.+..
T Consensus       261 a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igr  305 (345)
T 3oix_A          261 ALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGT  305 (345)
T ss_dssp             HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             HHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEECh
Confidence            478999999998  6998854 46899999999999999999843

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=83.38  E-value=3.5  Score=34.83  Aligned_cols=68  Identities=24%  Similarity=0.199  Sum_probs=39.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCcc---chHH----HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVP---ASIE----ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~---~~~~----~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +.++.+.+.|||.|+|++-..+......   ..++    .+..+++..  ++||-.+.  .+++-+..++.+||+.|-=
T Consensus        37 ~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~--~vpiSIDT--~~~~Va~aAl~aGa~iIND  111 (314)
T 2vef_A           37 QQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES--DVLISIDT--WKSQVAEAALAAGADLVND  111 (314)
T ss_dssp             HHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEC--SCHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC--CceEEEeC--CCHHHHHHHHHcCCCEEEE
Confidence            3367789999999999773211100000   0111    122233332  67877765  6788888888888887763

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=83.25  E-value=20  Score=30.27  Aligned_cols=90  Identities=23%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             HHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-c---CC-CCCccchHHH----HHHHHHHhCCCcEEEEec
Q psy16780         56 VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-G---RQ-LDYVPASIEA----LPEIAKAVGHKVDVYLDG  126 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g---~~-~~~~~~~~~~----l~~i~~~~~~~ipiia~G  126 (202)
                      ++++.+. +-|+.+=...+.-.|+.+.++|+|+|-+++.+ +   .. .|.+..+++.    ++.+.+.. .++||+++.
T Consensus        31 lr~l~~~-~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~-~~~PviaD~  108 (318)
T 1zlp_A           31 MHRLIEE-HGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAA-PNLCVVVDG  108 (318)
T ss_dssp             HHHHHHH-SSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHS-SSSEEEEEC
T ss_pred             HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhc-cCCCEEEeC
Confidence            4444432 46887777789999999999999999998731 1   11 2334444443    34444443 269999976


Q ss_pred             --CCCCHHHHH----HHHHhCCCEEEE
Q psy16780        127 --GVRYGTDVF----KALALGAKMVFV  147 (202)
Q Consensus       127 --GI~~~~D~~----kal~~GAd~V~i  147 (202)
                        |-.++.++.    +.+.+||.+|-+
T Consensus       109 d~Gyg~~~~v~~tv~~l~~aGaagv~i  135 (318)
T 1zlp_A          109 DTGGGGPLNVQRFIRELISAGAKGVFL  135 (318)
T ss_dssp             TTCSSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence              444665554    345589999876

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=83.25  E-value=11  Score=27.29  Aligned_cols=94  Identities=12%  Similarity=-0.008  Sum_probs=59.9

Q ss_pred             cccHHHHHHHHHhcCCCEEEEeccCHHHH-HHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHh-CCCcEEEEec
Q psy16780         50 TINWSDVTWLKTITKLPIVLKGILTAEDA-KIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAV-GHKVDVYLDG  126 (202)
Q Consensus        50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a-~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~-~~~ipiia~G  126 (202)
                      ....+.++.+-+..+..++ ....+.+.| +.+.+...|.|.++-. ++      ..-++.++.+++.- ..++|||...
T Consensus        22 ~~~r~~l~~~L~~~G~~~v-~~a~~g~~al~~~~~~~~DlillD~~MP~------mdG~el~~~ir~~~~~~~ipvI~lT   94 (134)
T 3to5_A           22 STMRRIVKNLLRDLGFNNT-QEADDGLTALPMLKKGDFDFVVTDWNMPG------MQGIDLLKNIRADEELKHLPVLMIT   94 (134)
T ss_dssp             HHHHHHHHHHHHHTTCCCE-EEESSHHHHHHHHHHHCCSEEEEESCCSS------SCHHHHHHHHHHSTTTTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCcEE-EEECCHHHHHHHHHhCCCCEEEEcCCCCC------CCHHHHHHHHHhCCCCCCCeEEEEE
Confidence            3345566666666665422 234555555 3445566888877643 11      12345666765432 2369999988


Q ss_pred             CCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780        127 GVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       127 GI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      +-.+.++..+++.+||+.+. ..||
T Consensus        95 a~~~~~~~~~~~~~Ga~~yl-~KP~  118 (134)
T 3to5_A           95 AEAKREQIIEAAQAGVNGYI-VKPF  118 (134)
T ss_dssp             SSCCHHHHHHHHHTTCCEEE-ESSC
T ss_pred             CCCCHHHHHHHHHCCCCEEE-ECCC
Confidence            99999999999999999775 4555

>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*

Probab=83.13  E-value=3.5  Score=32.79  Aligned_cols=89  Identities=7%  Similarity=0.011  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccc---hHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPA---SIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      +.++.+++ .++.+.+-.. ........+.+..+|.|.++..--+.....+.   -...+..+++.+  .+.+|+.| |-
T Consensus       147 ~~l~~L~~-~G~~ialDdfG~g~s~l~~L~~l~~d~iKiD~~~v~~~~~~~~~~~~l~~i~~~a~~l--~~~viaeG-VE  222 (250)
T 4f3h_A          147 QFLASVSA-MGCKVGLEQFGSGLDSFQLLAHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPT--GILTVAEF-VA  222 (250)
T ss_dssp             HHHHHHHT-TTCEEEEEEETSSTHHHHHHTTSCCSEEEECHHHHTTTTTCSHHHHHHHHTHHHHHHH--TCEEEECC-CC
T ss_pred             HHHHHHHH-CCCEEEEeCCCCCchHHHHHhhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHc--CCEEEEec-cC
Confidence            34444443 2555555433 23344555556666666665321011111111   223334445555  78899865 99


Q ss_pred             CHHHHHHHHHhCCCEEE
Q psy16780        130 YGTDVFKALALGAKMVF  146 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~  146 (202)
                      |.++...+..+|++.++
T Consensus       223 t~~~~~~l~~~G~~~~Q  239 (250)
T 4f3h_A          223 DAQSMSSFFTAGVDYVQ  239 (250)
T ss_dssp             CHHHHHHHHHHTCSEEC
T ss_pred             CHHHHHHHHHcCCCEEe
Confidence            99999999999999875

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=83.12  E-value=1.3  Score=36.43  Aligned_cols=41  Identities=24%  Similarity=0.257  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         53 WSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ++.++++++.+++||+.-+ +.+++++..++++|+|+|.++.
T Consensus       230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~  271 (311)
T 1ep3_A          230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGT  271 (311)
T ss_dssp             HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECT
T ss_pred             HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence            5788999998899999754 4689999999999999998853

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=83.11  E-value=9.9  Score=31.34  Aligned_cols=39  Identities=10%  Similarity=0.166  Sum_probs=28.2

Q ss_pred             HHHHHHHhc--CCCEEEEec-cC----HHHHHHHHHcCCcEEEeec
Q psy16780         55 DVTWLKTIT--KLPIVLKGI-LT----AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        55 ~i~~i~~~~--~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~   93 (202)
                      +++.+.+.+  ++||++... .+    .+.++.+.++|+|++.+..
T Consensus        58 v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~  103 (292)
T 2vc6_A           58 VVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVS  103 (292)
T ss_dssp             HHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence            555555554  689998865 22    4567888999999998864

>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A

Probab=83.04  E-value=4.9  Score=32.00  Aligned_cols=91  Identities=9%  Similarity=0.071  Sum_probs=51.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccc---hHHHHHHHHHHhCCCcEEEEecC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPA---SIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      ..+.++.+++. ++.+.+-.. ........+....+|.|.++..--+.......   -...+..+++.+  .+.+|+.| 
T Consensus       141 ~~~~l~~l~~~-G~~ialDdfG~g~ssl~~L~~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~--g~~viaeG-  216 (259)
T 3s83_A          141 AAVILKTLRDA-GAGLALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDL--DLEVVAEG-  216 (259)
T ss_dssp             HHHHHHHHHHH-TCEEEEECC---CHHHHHHHHSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHT--TCEEEECC-
T ss_pred             HHHHHHHHHHC-CCEEEEECCCCCchhHHHHHhCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHC--CCeEEEEe-
Confidence            33445555543 555555433 22344556666677777775421001111111   123344445555  78899865 


Q ss_pred             CCCHHHHHHHHHhCCCEEE
Q psy16780        128 VRYGTDVFKALALGAKMVF  146 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~  146 (202)
                      |-|.++...+..+|++.++
T Consensus       217 VEt~~~~~~l~~lG~~~~Q  235 (259)
T 3s83_A          217 VENAEMAHALQSLGCDYGQ  235 (259)
T ss_dssp             CCSHHHHHHHHHHTCCEEC
T ss_pred             CCCHHHHHHHHhcCCCEee
Confidence            9999999999999999876

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=83.03  E-value=1.1  Score=39.65  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             cHHHHHHHHHhc--CCCEEEE-eccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT--KLPIVLK-GILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.++++++.+  ++|||.= ++.+.+++..++.+|||.|.+..
T Consensus       359 sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigr  403 (443)
T 1tv5_A          359 STKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYS  403 (443)
T ss_dssp             HHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESH
T ss_pred             HHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcH
Confidence            468899999998  8999844 46899999999999999998843

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=82.99  E-value=11  Score=31.46  Aligned_cols=40  Identities=13%  Similarity=0.231  Sum_probs=29.0

Q ss_pred             HHHHHHHHhc-CCCEEEEec-cC----HHHHHHHHHcCCcEEEeec
Q psy16780         54 SDVTWLKTIT-KLPIVLKGI-LT----AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~   93 (202)
                      ++++.+.+.+ ++||++... .+    .+.++.+.++|+|++.+..
T Consensus        65 ~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~  110 (313)
T 3dz1_A           65 AVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAP  110 (313)
T ss_dssp             HHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred             HHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence            3566666555 789999764 22    4667889999999998853

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=82.49  E-value=0.8  Score=36.76  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             ccHHHHHHHHHhc-----CCCEEEEeccCHHHHHHHHHcCCcEEEeec
Q psy16780         51 INWSDVTWLKTIT-----KLPIVLKGILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        51 ~~~~~i~~i~~~~-----~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ...+.++++|+..     ++|+.+-+..+.+.+..+.++|+|+++++.
T Consensus       155 ~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGS  202 (230)
T 1tqj_A          155 EVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGS  202 (230)
T ss_dssp             GGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESH
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECH
Confidence            3577888888877     799998887777999999999999999854

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=81.97  E-value=4.6  Score=34.69  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-CH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-YG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~~  131 (202)
                      ++.++++++..++|++. .+.+++.+..+.+. +|.+.+..+.       ..+...++++.+   ...||+.+-|.. |.
T Consensus       159 l~~l~~~~~e~Gl~~~t-e~~d~~~~~~l~~~-vd~lkIgAr~-------~~n~~LL~~va~---~~kPVilk~G~~~tl  226 (350)
T 1vr6_A          159 LEYLREAADKYGMYVVT-EALGEDDLPKVAEY-ADIIQIGARN-------AQNFRLLSKAGS---YNKPVLLKRGFMNTI  226 (350)
T ss_dssp             HHHHHHHHHHHTCEEEE-ECSSGGGHHHHHHH-CSEEEECGGG-------TTCHHHHHHHHT---TCSCEEEECCTTCCH
T ss_pred             HHHHHHHHHHcCCcEEE-EeCCHHHHHHHHHh-CCEEEECccc-------ccCHHHHHHHHc---cCCcEEEcCCCCCCH
Confidence            45777777788999886 67888888888888 9999996532       224456666652   379999999997 88


Q ss_pred             HHHHHHHH----hCCCEEEE
Q psy16780        132 TDVFKALA----LGAKMVFV  147 (202)
Q Consensus       132 ~D~~kal~----~GAd~V~i  147 (202)
                      +++..|+.    .|..-+.+
T Consensus       227 ~ei~~Ave~i~~~GN~~viL  246 (350)
T 1vr6_A          227 EEFLLSAEYIANSGNTKIIL  246 (350)
T ss_dssp             HHHHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEE
Confidence            88887765    47643444

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=81.95  E-value=21  Score=29.70  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=28.5

Q ss_pred             HHHHHHHHhc--CCCEEEEec-cC----HHHHHHHHHcCC-cEEEeec
Q psy16780         54 SDVTWLKTIT--KLPIVLKGI-LT----AEDAKIGVEMGA-SAIMVSN   93 (202)
Q Consensus        54 ~~i~~i~~~~--~~Pv~vK~~-~~----~~~a~~l~~aG~-d~I~v~~   93 (202)
                      ++++.+.+.+  ++||++... .+    .+.++.+.++|+ |++.+..
T Consensus        64 ~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~  111 (311)
T 3h5d_A           64 ELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIV  111 (311)
T ss_dssp             HHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEEC
T ss_pred             HHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcC
Confidence            3666666665  689999765 22    455778899997 9998763

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=81.66  E-value=5  Score=33.56  Aligned_cols=69  Identities=28%  Similarity=0.218  Sum_probs=38.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCC-C--CccchHHHHHHHHHHh-CCCcEEEEecCCCCHHHHHHHHHhCCCEEE
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQL-D--YVPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~-~--~~~~~~~~l~~i~~~~-~~~ipiia~GGI~~~~D~~kal~~GAd~V~  146 (202)
                      +.++...+.|||.|+|++-+.+.. .  .....++-+..+.+.+ ..++||..+.  .+++-+.+++.+||+.|-
T Consensus        56 ~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSIDT--~~~~Va~aAl~aGa~iIN  128 (294)
T 2dqw_A           56 ERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSVDT--RKPEVAEEALKLGAHLLN  128 (294)
T ss_dssp             HHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEEEC--SCHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEC--CCHHHHHHHHHhCCCEEE
Confidence            557888999999999987321110 0  0111222111111222 1267777765  678888888888887664

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=81.36  E-value=1.8  Score=35.94  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=35.8

Q ss_pred             cHHHHHHHHHhc--CCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT--KLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.++++++.+  ++||+.=+ +.+++++..++.+|||+|.++.
T Consensus       228 ~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~  272 (311)
T 1jub_A          228 ALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT  272 (311)
T ss_dssp             HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred             HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEch
Confidence            478999999998  89998654 5799999999999999999854

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=81.32  E-value=5.1  Score=33.23  Aligned_cols=72  Identities=18%  Similarity=0.119  Sum_probs=39.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCC-C--CccchHHHHHHHHHHh-CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQL-D--YVPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~-~--~~~~~~~~l~~i~~~~-~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.++...+.|||.|+|++-..+.. .  .....+.-+..+.+.+ ..++||..+.  .+++-+..++.+||+.|-=-+
T Consensus        33 ~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSIDT--~~~~va~aAl~aGa~iINdvs  108 (280)
T 1eye_A           33 KHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDT--MRADVARAALQNGAQMVNDVS  108 (280)
T ss_dssp             HHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEEEC--SCHHHHHHHHHTTCCEEEETT
T ss_pred             HHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEeC--CCHHHHHHHHHcCCCEEEECC
Confidence            346778999999999986321110 0  0011122111111212 1167887765  688888888888888876544

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=81.24  E-value=22  Score=29.52  Aligned_cols=89  Identities=18%  Similarity=0.088  Sum_probs=0.0

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEec------cCHHH----HHHHHH-cCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGI------LTAED----AKIGVE-MGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~------~~~~~----a~~l~~-aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      ..+-.....+.|++.++.|+++--.      .+++.    +.++.+ +|+++|.+        +++....+.++.+.++ 
T Consensus        78 Tldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~~eaGa~aVkl--------Edg~e~~~~I~al~~a-  148 (281)
T 1oy0_A           78 SIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKL--------EGGERVAEQIACLTAA-  148 (281)
T ss_dssp             CGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEE--------EBSGGGHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHHHHHHHHHhCCeEEEE--------CCcHHHHHHHHHHHHC-


Q ss_pred             CCCcEEE-----------EecCCC----------CHHHHHHHHHhCCCEEEE
Q psy16780        117 GHKVDVY-----------LDGGVR----------YGTDVFKALALGAKMVFV  147 (202)
Q Consensus       117 ~~~ipii-----------a~GGI~----------~~~D~~kal~~GAd~V~i  147 (202)
                        .+||+           ..||.+          --+|+....++||+++.+
T Consensus       149 --gIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivl  198 (281)
T 1oy0_A          149 --GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVM  198 (281)
T ss_dssp             --TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             --CCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEE

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=81.20  E-value=5.6  Score=33.18  Aligned_cols=75  Identities=7%  Similarity=-0.030  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-CH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-YG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~~  131 (202)
                      ++.++++++..++|++- .+.+++.+..+.+ .+|.+.+....-       .+.+.+++++ ..  ..||+.+-|.. +.
T Consensus        78 l~~l~~~~~~~Glp~~t-e~~d~~~~~~l~~-~vd~~kIgA~~~-------~n~~Ll~~~a-~~--~kPV~lk~G~~~t~  145 (292)
T 1o60_A           78 LKIFQELKDTFGVKIIT-DVHEIYQCQPVAD-VVDIIQLPAFLA-------RQTDLVEAMA-KT--GAVINVKKPQFLSP  145 (292)
T ss_dssp             HHHHHHHHHHHCCEEEE-ECCSGGGHHHHHT-TCSEEEECGGGT-------TCHHHHHHHH-HT--TCEEEEECCTTSCG
T ss_pred             HHHHHHHHHHcCCcEEE-ecCCHHHHHHHHh-cCCEEEECcccc-------cCHHHHHHHH-cC--CCcEEEeCCCCCCH
Confidence            44666777778999885 6788888888888 799999965321       2334555554 23  67777777765 66


Q ss_pred             HHHHHHHH
Q psy16780        132 TDVFKALA  139 (202)
Q Consensus       132 ~D~~kal~  139 (202)
                      +++..+.+
T Consensus       146 ~ei~~Av~  153 (292)
T 1o60_A          146 SQMGNIVE  153 (292)
T ss_dssp             GGHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655543

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=81.12  E-value=6.1  Score=32.72  Aligned_cols=75  Identities=8%  Similarity=0.042  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-CH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-YG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~~  131 (202)
                      ++.++++++..++|++- .+.++..+..+.+. +|.+.+....-       .+.+.++++. ..  ..||+.+-|.. +.
T Consensus        75 l~~l~~~~~~~Gl~~~t-e~~d~~~~~~l~~~-~d~~kIga~~~-------~n~~ll~~~a-~~--~kPV~lk~G~~~t~  142 (280)
T 2qkf_A           75 LKIFEKVKAEFGIPVIT-DVHEPHQCQPVAEV-CDVIQLPAFLA-------RQTDLVVAMA-KT--GNVVNIKKPQFLSP  142 (280)
T ss_dssp             HHHHHHHHHHHCCCEEE-ECCSGGGHHHHHHH-CSEEEECGGGT-------TBHHHHHHHH-HT--CCEEEEECCTTSCG
T ss_pred             HHHHHHHHHHcCCcEEE-ecCCHHHHHHHHhh-CCEEEECcccc-------cCHHHHHHHH-cC--CCcEEEECCCCCCH
Confidence            44666777778999885 67888888888888 99999966432       2344555553 23  67777777775 66


Q ss_pred             HHHHHHHH
Q psy16780        132 TDVFKALA  139 (202)
Q Consensus       132 ~D~~kal~  139 (202)
                      +++..+.+
T Consensus       143 ~e~~~A~~  150 (280)
T 2qkf_A          143 SQMKNIVE  150 (280)
T ss_dssp             GGHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=80.77  E-value=5.2  Score=33.87  Aligned_cols=69  Identities=16%  Similarity=-0.005  Sum_probs=39.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccchHHH-------HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA-------LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~-------l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +.++...+.|||.|+|++-..+.. ...+.-+.       +..+++.+ .++||-.+.  .+++-+.+++.+||+.|-=-
T Consensus        69 ~~A~~~v~~GAdIIDIGgeSTrPG-~~v~~~eEl~Rv~pvI~~l~~~~-~~vpISIDT--~~~~VaeaAl~aGa~iINDV  144 (318)
T 2vp8_A           69 DAVHRAVADGADVIDVGGVKAGPG-ERVDVDTEITRLVPFIEWLRGAY-PDQLISVDT--WRAQVAKAACAAGADLINDT  144 (318)
T ss_dssp             HHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHS-TTCEEEEEC--SCHHHHHHHHHHTCCEEEET
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCC-CCCCHHHHHHHHHHHHHHHHhhC-CCCeEEEeC--CCHHHHHHHHHhCCCEEEEC
Confidence            346778999999999976321111 11111111       22233222 268887766  68888889999999977543

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=80.16  E-value=2.5  Score=36.23  Aligned_cols=42  Identities=19%  Similarity=0.052  Sum_probs=36.6

Q ss_pred             ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcC-CcEEEee
Q psy16780         51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMG-ASAIMVS   92 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG-~d~I~v~   92 (202)
                      ..++.++++++.+++||+.-+..++++++.+++.| +|.|-++
T Consensus       281 ~~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~g  323 (364)
T 1vyr_A          281 YSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFG  323 (364)
T ss_dssp             CCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEES
T ss_pred             ccHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEEC
Confidence            35778999999999999987767999999999998 9999873

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=80.11  E-value=1.2  Score=39.13  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHhc--CCCEEEE-eccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT--KLPIVLK-GILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~--~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.|+++++.+  ++||+.= ++.+.+++..++.+|||+|.+..
T Consensus       331 al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgr  375 (415)
T 3i65_A          331 STKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYS  375 (415)
T ss_dssp             HHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESH
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcH
Confidence            468999999988  7998843 45899999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1goxa_	359	c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia	2e-45
d1tb3a1	349	c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus	1e-43
d1kbia1	414	c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal	5e-42
d1p4ca_	353	c.1.4.1 (A:) Membrane-associated (S)-mandelate deh	2e-40
d1p0ka_	329	c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera	9e-34
d1vcfa1	310	c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i	3e-29
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	2e-14
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	3e-13
d1ea0a2	771	c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy	3e-07
d1ofda2	809	c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy	2e-06
d1juba_	311	c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco	2e-04

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  151 bits (382), Expect = 2e-45
 Identities = 93/178 (52%), Positives = 131/178 (73%)

Query: 20  LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
           L NF G      + ++ S L +Y+  Q+D +++W DV WL+TIT LPI++KG++TAEDA+
Sbjct: 180 LKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDAR 239

Query: 80  IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
           + V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA   ++ V+LDGGVR GTDVFKALA
Sbjct: 240 LAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 299

Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
           LGA  VF+GRP ++ LA  G++GV+KVL ++ +EF+  +ALSGC S+ EI R  +  +
Sbjct: 300 LGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 357

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  146 bits (370), Expect = 1e-43
 Identities = 85/168 (50%), Positives = 116/168 (69%)

Query: 27  LSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGA 86
           L  L    +     +   S    +  W+D++ L++IT+LPI+LKGILT EDA++ ++   
Sbjct: 180 LKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNV 239

Query: 87  SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
             I+VSNHGGRQLD V ASI+AL E+  AV  K++VY+DGGVR GTDV KALALGA+ +F
Sbjct: 240 QGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIF 299

Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
           +GRP LWGLA  G+ GV++VLDIL  E  + + LSGC SV EI  +++
Sbjct: 300 LGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (363), Expect = 5e-42
 Identities = 70/186 (37%), Positives = 111/186 (59%), Gaps = 5/186 (2%)

Query: 14  VLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGIL 73
           +  ++       K  + +N  +S      ++  +D ++ W D+  LK  TKLPIV+KG+ 
Sbjct: 196 MKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255

Query: 74  TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-----VGHKVDVYLDGGV 128
             ED     E+G S +++SNHGGRQLD+  A IE L E         +  K++V++DGGV
Sbjct: 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 315

Query: 129 RYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGE 188
           R GTDV KAL LGAK V +GRP L+  +  G++GV K ++IL +E + ++ L G TS+ E
Sbjct: 316 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 375

Query: 189 IQREMV 194
           ++ +++
Sbjct: 376 LKPDLL 381

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score =  138 bits (349), Expect = 2e-40
 Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 37  SSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG 96
               A ++ Q+D + NW  + WL+ +    +++KG+L+AEDA   +  GA  +++SNHGG
Sbjct: 195 EMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGG 254

Query: 97  RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA 156
           RQLD   + +E L +          V +D G R G+D+ KALALGA+ V +GR  L+GLA
Sbjct: 255 RQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLA 312

Query: 157 HSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
             G++GV +VL +L  + D+ LA  GC  +  +  + + +E
Sbjct: 313 ARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 353

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

 Score =  120 bits (302), Expect = 9e-34
 Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 20/162 (12%)

Query: 53  WSDVTWLKTITKLPIVLKGILT---AEDAKIGVEMGASAIMVSNHGGRQLDYVP------ 103
              +  + +   +P+++K +        A    E GA+A+ +  +GG     +       
Sbjct: 147 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQR 206

Query: 104 ----------ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153
                     ++  +L EI         +   GG++   DV KA+ALGA    +    L 
Sbjct: 207 QISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLK 265

Query: 154 GLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
            L  SG+ G+ + + +++ E    + + G  ++ ++Q+  +V
Sbjct: 266 ALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLV 307

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

 Score =  108 bits (270), Expect = 3e-29
 Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 21/163 (12%)

Query: 51  INWSDVTWLKTITKLPIVLKGILT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE 107
               +          P+++K +      E A    ++  +A+ V+  GG     V   + 
Sbjct: 146 RGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVR 205

Query: 108 ALPEIAKA-----------------VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
                                    V   + +   GGV  GTD  KALALGA ++ V RP
Sbjct: 206 FGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARP 265

Query: 151 ALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM 193
            L      G   V   +   + E   AL   G  +  E +  +
Sbjct: 266 LLRPAL-EGAERVAAWIGDYLEELRTALFAIGARNPKEARGRV 307

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 53  WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
            S +  +K      +++  I T ++  +  + G   +  +  G        A  + +  I
Sbjct: 118 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-VALI 176

Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
                  + V  +G +    +  K   LG   + VG 
Sbjct: 177 EALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGG 213

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 63.7 bits (154), Expect = 3e-13
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 2/99 (2%)

Query: 53  WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
              V++++T      ++  I T E+AK    +G   I  + HG           +   + 
Sbjct: 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQF 166

Query: 113 AKAVGHKVD--VYLDGGVRYGTDVFKALALGAKMVFVGR 149
            K V   VD  V  +G V       + + LG     VG 
Sbjct: 167 LKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGG 205

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 19/118 (16%)

Query: 56  VTWLKTIT-KLPIVLK---GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS------ 105
           +  LK I     + +K          A    +  A  I++S + G      P +      
Sbjct: 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAG 620

Query: 106 ---IEALPEIAKA-----VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL 155
                 L E+ +      + H+V +  DGG++ G D+  A  LGA+   +G  +L  +
Sbjct: 621 LPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAM 678

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 106 IEALPEIAKA-----VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL 155
              + E+ +      +  +V +  DGG++ G DV  A  +GA+    G  A+   
Sbjct: 651 ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAE 705

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Length = 311

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 8/142 (5%)

Query: 48  DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE 107
               +       +        +  I          E           G       P ++ 
Sbjct: 171 LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA 230

Query: 108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVL 167
            +      +  ++ +   GG+  G D F+ L  GA M+ +G      L   G +   +  
Sbjct: 231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT----ALHKEGPAIFDR-- 284

Query: 168 DILINEFDQALALSGCTSVGEI 189
             +I E ++ +   G  S+ + 
Sbjct: 285 --IIKELEEIMNQKGYQSIADF 304

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	99.98
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	99.97
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	99.96
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	99.96
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	99.95
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	99.93
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	99.8
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	99.77
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	99.75
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	99.75
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.74
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	99.72
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	99.72
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.71
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	99.7
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	99.69
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	99.68
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	99.68
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	99.67
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	99.57
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	99.54
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.5
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.44
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	99.38
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	99.02
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	98.84
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	98.81
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	98.76
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	98.71
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	98.71
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	98.61
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	98.59
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	98.57
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	98.56
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	98.53
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	98.53
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	98.52
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	98.51
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	98.5
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	98.47
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	98.45
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	98.43
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	98.39
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	98.36
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	98.34
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	98.32
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	98.3
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	98.16
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	98.15
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	98.1
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	98.07
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	98.05
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	98.02
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	97.95
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	97.83
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	97.78
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	97.75
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	97.73
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.68
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.67
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.66
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	97.66
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	97.65
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	97.63
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	97.63
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	97.6
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	97.58
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	97.5
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.5
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	97.4
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	97.34
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	97.3
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	97.28
d1l6wa_	220	Decameric fructose-6-phosphate aldolase/transaldol	97.25
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	97.23
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	97.16
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	97.15
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	97.11
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	97.06
d1wx0a1	211	Decameric fructose-6-phosphate aldolase/transaldol	97.04
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	96.94
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	96.94
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	96.82
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	96.8
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	96.76
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	96.75
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	96.74
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	96.72
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	96.63
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	96.6
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	96.6
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	96.56
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	96.48
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	96.42
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	96.41
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	96.31
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	96.27
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	96.24
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	96.07
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	96.07
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	96.02
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	95.95
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	95.88
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	95.88
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	95.7
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	95.08
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	95.01
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	94.96
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	94.84
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	94.41
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	94.27
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	94.19
d2p10a1	197	Uncharacterized protein Mll9387 {Mesorhizobium lot	94.03
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	93.58
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	93.37
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	93.22
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	93.17
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	92.97
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	92.81
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	92.1
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	91.88
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	91.72
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	91.51
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	91.41
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	91.38
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	90.9
d2ffca1	332	Orotidine 5'-monophosphate decarboxylase (OMP deca	90.81
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	90.46
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	90.41
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	89.72
d1onra_	316	Transaldolase {Escherichia coli [TaxId: 562]}	89.49
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	89.04
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	89.02
d2basa1	261	Hypothetical protein YkuI, N-terminal domain {Baci	89.0
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	87.31
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	86.99
d1vkfa_	172	Glycerol uptake operon antiterminator-related prot	86.6
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	86.55
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	85.57
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	85.49
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	85.46
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	85.35
d1pkla2	258	Pyruvate kinase, N-terminal domain {Leishmania mex	85.3
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	85.18
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	84.83
d1a3xa2	265	Pyruvate kinase, N-terminal domain {Baker's yeast	84.33
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	84.18
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	83.45
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	83.39
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	83.09
d1f61a_	418	Isocitrate lyase {Mycobacterium tuberculosis [TaxI	83.05
d1muca1	242	Muconate-lactonizing enzyme {Pseudomonas putida [T	82.45
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	82.31
d2chra1	244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	81.97
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	81.83
d1e0ta2	246	Pyruvate kinase, N-terminal domain {Escherichia co	81.76
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	81.72
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	81.64
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	81.11
d1xrsb1	160	D-lysine 5,6-aminomutase beta subunit KamE, C-term	81.1
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	80.54
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	80.52
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	80.41

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=7.1e-32  Score=233.58  Aligned_cols=152  Identities=55%  Similarity=0.933  Sum_probs=142.9

Q ss_pred             hhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780         44 TSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii  123 (202)
                      ....++.++|+.++++++.++.|+++|++.+.+++..+.++|+|++.++||||+++++.+++.+.++++++.+++++|||
T Consensus       197 ~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~ii  276 (349)
T d1tb3a1         197 VSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVY  276 (349)
T ss_dssp             -----CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEE
T ss_pred             ccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEE
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                      ++||||++.|++|||++||++|++||||++++..+|.++|.++++.|++||+..|.++|+++++||+++.+.
T Consensus       277 adGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~~~i~  348 (349)
T d1tb3a1         277 MDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ  348 (349)
T ss_dssp             EESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC
T ss_pred             eccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhee
Confidence            999999999999999999999999999999999999999999999999999999999999999999998775

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.97  E-value=3.8e-30  Score=222.92  Aligned_cols=159  Identities=56%  Similarity=0.985  Sum_probs=150.6

Q ss_pred             chhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780         37 SSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV  116 (202)
Q Consensus        37 ~~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~  116 (202)
                      .+..+.+..+.++..+|+.++++++.++.|+++|++.+.+++..+.+.|++++.+++|+|+++++++++.+.+.++++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~  276 (359)
T d1goxa_         197 SGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAA  276 (359)
T ss_dssp             --HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT
T ss_pred             ccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHHHHHccccceecccccccccccccchhhhchhhhhcc
Confidence            34456688889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780        117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV  195 (202)
Q Consensus       117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~  195 (202)
                      .+++|||+|||||+|.|++|||++|||+|++||||++++...|.++|+++++.|++||+..|.++|+++++||++.+|+
T Consensus       277 ~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~  355 (359)
T d1goxa_         277 QGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIA  355 (359)
T ss_dssp             TTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEE
T ss_pred             CCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhcc
Confidence            8899999999999999999999999999999999999988999999999999999999999999999999999998875

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.96  E-value=2.1e-28  Score=210.81  Aligned_cols=155  Identities=37%  Similarity=0.703  Sum_probs=146.8

Q ss_pred             HHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         40 LAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        40 ~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      ...+..+.++.+.|+.++++++.++.|+++|++.+.+++..+.+.|+|++.+++|+|+++++.+++...+.+++...  +
T Consensus       198 ~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~  275 (353)
T d1p4ca_         198 AALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--G  275 (353)
T ss_dssp             HHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--C
T ss_pred             HHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHHHhcCCchhhhcccccccccccccchhcccchhccc--c
Confidence            46678888999999999999999999999999999999999999999999999999999999999999998887766  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH  196 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~  196 (202)
                      +|||+|||||+|.|++|||++|||+|++||||++++..+|.++|+++++.|++||+..|.++|+++++||++..|++
T Consensus       276 ~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~egv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~  352 (353)
T d1p4ca_         276 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN  352 (353)
T ss_dssp             SCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEE
T ss_pred             cceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHhccC
Confidence            89999999999999999999999999999999999889999999999999999999999999999999999887764

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.4e-28  Score=214.68  Aligned_cols=156  Identities=44%  Similarity=0.735  Sum_probs=143.3

Q ss_pred             hhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH-----hC
Q psy16780         43 ITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-----VG  117 (202)
Q Consensus        43 ~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-----~~  117 (202)
                      +..+.++.++|+.+++++..++.|+++|.+.+.+++..+.+.|++++++++|+|++.++.+++...+.++...     +.
T Consensus       225 i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~  304 (414)
T d1kbia1         225 LSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLK  304 (414)
T ss_dssp             CBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCB
T ss_pred             HHHhcccCCCHHHHHHHhccCCceEEeeccchhHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccC
Confidence            4456678889999999999999999999999999999999999999999999999999988888888777554     34


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccccc
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE  197 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~  197 (202)
                      +++|||+|||||+|.|++|||++|||+|+|||||++++...|.++|.++++.|++||+..|.++|+++++||+++.+...
T Consensus       305 ~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~  384 (414)
T d1kbia1         305 DKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLS  384 (414)
T ss_dssp             TTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECT
T ss_pred             CceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHHcccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999977644


Q ss_pred             c
Q psy16780        198 T  198 (202)
Q Consensus       198 ~  198 (202)
                      .
T Consensus       385 ~  385 (414)
T d1kbia1         385 T  385 (414)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=6e-28  Score=206.25  Aligned_cols=152  Identities=21%  Similarity=0.379  Sum_probs=124.6

Q ss_pred             hhhccCccc--cHHHHHHHHHhcCCCEEEEec---cCHHHHHHHHHcCCcEEEeeccCcCCCC----------------C
Q psy16780         43 ITSQLDETI--NWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLD----------------Y  101 (202)
Q Consensus        43 ~~~~~d~~~--~~~~i~~i~~~~~~Pv~vK~~---~~~~~a~~l~~aG~d~I~v~~~gg~~~~----------------~  101 (202)
                      .++.+++..  .++.++++++.++.|+++|.+   .++++++.+.++|+|+|+++||+|++++                .
T Consensus       135 ~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~  214 (329)
T d1p0ka_         135 VMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSW  214 (329)
T ss_dssp             --------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTC
T ss_pred             hhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHh
Confidence            444444443  688999999999999999987   6899999999999999999999987653                2


Q ss_pred             ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy16780        102 VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALS  181 (202)
Q Consensus       102 ~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~  181 (202)
                      +.+....+.++.... +++|||++|||+++.|++|++++|||+|++||++++++...|+++|.++++.|++||+..|.++
T Consensus       215 ~~~~~~~l~~~~~~~-~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~el~~~m~~~  293 (329)
T d1p0ka_         215 GISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVL  293 (329)
T ss_dssp             SCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc-CCceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666677766655 4799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhhhhcccc
Q psy16780        182 GCTSVGEIQREMVV  195 (202)
Q Consensus       182 G~~~i~el~~~~~~  195 (202)
                      |+++++||++.+++
T Consensus       294 G~~~i~el~~~~lv  307 (329)
T d1p0ka_         294 GARTIADLQKAPLV  307 (329)
T ss_dssp             TCCBHHHHTTCCEE
T ss_pred             CCCCHHHhCcCCEE
Confidence            99999999988665

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=3.5e-25  Score=186.55  Aligned_cols=145  Identities=25%  Similarity=0.280  Sum_probs=123.4

Q ss_pred             ccCccc-cHHHHHHHHHhcCCCEEEEec---cCHHHHHHHHHcCCcEEEeeccCcCCC------------------CCcc
Q psy16780         46 QLDETI-NWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQL------------------DYVP  103 (202)
Q Consensus        46 ~~d~~~-~~~~i~~i~~~~~~Pv~vK~~---~~~~~a~~l~~aG~d~I~v~~~gg~~~------------------~~~~  103 (202)
                      .+++.+ .+..+.+....+++|+++|.+   .++++++.+.++|+|+|+|+||+|+++                  +.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~  219 (310)
T d1vcfa1         140 RGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGI  219 (310)
T ss_dssp             TSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSC
T ss_pred             ccccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcch
Confidence            444444 455566666677999999988   689999999999999999999988653                  1235


Q ss_pred             chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780        104 ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGC  183 (202)
Q Consensus       104 ~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~  183 (202)
                      ++...+.++++. ..++|||++|||+++.|++|+|++|||+|++||+|++++ ..|.++|.++++.|++||+.+|.++|+
T Consensus       220 ~~~~al~~~~~~-~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~-~~G~~gv~~~l~~l~~El~~~m~~~G~  297 (310)
T d1vcfa1         220 PTARAILEVREV-LPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA-LEGAERVAAWIGDYLEELRTALFAIGA  297 (310)
T ss_dssp             BHHHHHHHHHHH-CSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhh-cCCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            667778877654 458999999999999999999999999999999999964 578899999999999999999999999


Q ss_pred             CCHHhhhhc
Q psy16780        184 TSVGEIQRE  192 (202)
Q Consensus       184 ~~i~el~~~  192 (202)
                      ++++||+++
T Consensus       298 ~~i~el~g~  306 (310)
T d1vcfa1         298 RNPKEARGR  306 (310)
T ss_dssp             SSGGGGTTC
T ss_pred             CCHHHHhhh
Confidence            999999866

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=99.80  E-value=5.2e-19  Score=154.27  Aligned_cols=147  Identities=22%  Similarity=0.288  Sum_probs=121.0

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhCC
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVGH  118 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~  118 (202)
                      .++.+...+.++++++.. ++||+++.+.|.+.++.|.++|||+|.|+-.+|..      ...+.|.+.++.++.+....
T Consensus       173 hG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~  252 (388)
T d1eepa_         173 HGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNN  252 (388)
T ss_dssp             CCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhcc
Confidence            567777788999999876 79999999999999999999999999998765521      12356788888887766543


Q ss_pred             -CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHh--------------------hh--------------------
Q psy16780        119 -KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL--------------------AH--------------------  157 (202)
Q Consensus       119 -~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~--------------------~~--------------------  157 (202)
                       .+|||++|||+++.|++|||++|||+||+|++|....                    .+                    
T Consensus       253 ~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~~~~~~~~  332 (388)
T d1eepa_         253 TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEP  332 (388)
T ss_dssp             SSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC--------------------------
T ss_pred             CCceEEeccccCcCCceeeeEEeccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhccccccccccccccc
Confidence             7999999999999999999999999999999987321                    00                    


Q ss_pred             -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                           +|.       -.+.+++.+|..+||..|.++|+.+++||+++
T Consensus       333 ~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~  379 (388)
T d1eepa_         333 KKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN  379 (388)
T ss_dssp             ----------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred             cccccCceEEEeCCCCCHHHHHHHHHHHHHHHhhccCcccHHHHhhC
Confidence                 111       12678899999999999999999999999965

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.6e-18  Score=146.01  Aligned_cols=148  Identities=24%  Similarity=0.330  Sum_probs=116.6

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG  117 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~  117 (202)
                      ..+++....+.++++|+.. ++||+++.+.+.+.++.+.++|||+|.|+..+|..      ...+.|.+.++.++.+...
T Consensus       119 A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~  198 (330)
T d1vrda1         119 AHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVAR  198 (330)
T ss_dssp             SCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHH
Confidence            3556666778899998876 79999999999999999999999999996554421      1123566666555544331


Q ss_pred             -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh---------------------------------------
Q psy16780        118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH---------------------------------------  157 (202)
Q Consensus       118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~---------------------------------------  157 (202)
                       -++|||++|||+++.|++|||++|||+||+|+.|...-.+                                       
T Consensus       199 ~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~  278 (330)
T d1vrda1         199 KYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENK  278 (330)
T ss_dssp             TTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC--------------------
T ss_pred             hcCceEEecCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccCchhhcccccccc
Confidence             2799999999999999999999999999999999842100                                       


Q ss_pred             ---cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 ---SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 ---~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                         +|.       -.+.++++.+..+||..|.++|+++|+||++.
T Consensus       279 ~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~  323 (330)
T d1vrda1         279 FVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEK  323 (330)
T ss_dssp             -----CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             ccCCCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcC
Confidence               010       13788999999999999999999999999886

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.75  E-value=4.8e-18  Score=146.88  Aligned_cols=147  Identities=17%  Similarity=0.231  Sum_probs=116.7

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC-
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG-  117 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-  117 (202)
                      .++.....+.++++|+.. ++||++..+.+++.++.|.++|||+|.|+.++|..      .--+.|.+.++.++++... 
T Consensus       129 ~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~  208 (365)
T d1zfja1         129 HGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVARE  208 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHh
Confidence            455666677899999887 78999999999999999999999999997655521      1224577777766644331 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh----------------------------------------
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH----------------------------------------  157 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~----------------------------------------  157 (202)
                      ..+|||++|||+++.|++|||++|||+||+|++|...-.+                                        
T Consensus       209 ~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~  288 (365)
T d1zfja1         209 YGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEA  288 (365)
T ss_dssp             TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------
T ss_pred             CCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhccccccccccccccc
Confidence            2699999999999999999999999999999987631000                                        


Q ss_pred             -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                           +|.       -.+.+.+..|..+||..|.++|+.+|+||+++
T Consensus       289 ~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~  335 (365)
T d1zfja1         289 NKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN  335 (365)
T ss_dssp             CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             ccccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhC
Confidence                 010       12678899999999999999999999999876

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=4.3e-18  Score=147.87  Aligned_cols=146  Identities=22%  Similarity=0.282  Sum_probs=116.8

Q ss_pred             ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccchHHHHHHHHHHhC-
Q psy16780         46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPASIEALPEIAKAVG-  117 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~-  117 (202)
                      .+......+.++++++.. ++|+++..+.+++.++.|.++|||+|.|...+|..-      .-+.|.+.++.++.+... 
T Consensus       141 ~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~  220 (378)
T d1jr1a1         141 QGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARR  220 (378)
T ss_dssp             SCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGG
T ss_pred             CccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcc
Confidence            556666778899999877 899999999999999999999999999977654211      124566777666654432 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------------
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH--------------------  157 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~--------------------  157 (202)
                      ..+|||++|||+++.|++|||++|||+||||++|...                    +.+                    
T Consensus       221 ~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~  300 (378)
T d1jr1a1         221 FGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADK  300 (378)
T ss_dssp             GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------
T ss_pred             cCCceecccccccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccccchhhhhhcccchhhhhcccccc
Confidence            2699999999999999999999999999999998731                    100                    


Q ss_pred             ----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780        158 ----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQR  191 (202)
Q Consensus       158 ----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~  191 (202)
                          +|.       -.+.+++..|..+||..|.++|+++|+||++
T Consensus       301 ~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~  345 (378)
T d1jr1a1         301 IKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRA  345 (378)
T ss_dssp             CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred             ccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHh
Confidence                110       1378899999999999999999999999986

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=99.74  E-value=6.8e-18  Score=142.19  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=106.9

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--CH----HHHHHHHHcCCcEEEeeccCcCC-----------C-----CC---
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--TA----EDAKIGVEMGASAIMVSNHGGRQ-----------L-----DY---  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--~~----~~a~~l~~aG~d~I~v~~~gg~~-----------~-----~~---  101 (202)
                      .+++...+.++++++..++|+++|+..  +.    ..++.+.+.|++++...+.....           .     .+   
T Consensus       141 ~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~s  220 (311)
T d1juba_         141 YDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIG  220 (311)
T ss_dssp             GCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEE
T ss_pred             ccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCcc
Confidence            355556778999999999999999984  22    22556677888988876532110           0     01   


Q ss_pred             cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q psy16780        102 VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA  177 (202)
Q Consensus       102 ~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~  177 (202)
                      ++    .....+.++++.++.++|||++|||+|++|+.+++.+|||+|+++|++++    +|+    .+++.+.++|+.+
T Consensus       221 g~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~----~Gp----~~i~~i~~~L~~~  292 (311)
T d1juba_         221 GAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGP----AIFDRIIKELEEI  292 (311)
T ss_dssp             SGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCT----HHHHHHHHHHHHH
T ss_pred             ccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh----cCh----HHHHHHHHHHHHH
Confidence            11    13344556666666789999999999999999999999999999999986    477    5778999999999


Q ss_pred             HHHhCCCCHHhhhhc
Q psy16780        178 LALSGCTSVGEIQRE  192 (202)
Q Consensus       178 m~~~G~~~i~el~~~  192 (202)
                      |...|+++++|++++
T Consensus       293 m~~~G~~si~e~~G~  307 (311)
T d1juba_         293 MNQKGYQSIADFHGK  307 (311)
T ss_dssp             HHHHTCCSGGGTTTC
T ss_pred             HHHcCCCCHHHhcCc
Confidence            999999999999986

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=99.72  E-value=4.3e-17  Score=140.82  Aligned_cols=147  Identities=18%  Similarity=0.272  Sum_probs=116.8

Q ss_pred             ccCccccHHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHh-
Q psy16780         46 QLDETINWSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAV-  116 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~-  116 (202)
                      .+..+...+.++.+++..  +.||+++.+.|++.++.|.++|+|+|.|+-.+|..      ..-+.|.+.++.+++++. 
T Consensus       132 hG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~  211 (362)
T d1pvna1         132 DGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERN  211 (362)
T ss_dssp             CCCBHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHH
Confidence            445555667888887654  58999999999999999999999999998665531      123467888887765432 


Q ss_pred             ------CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-------------
Q psy16780        117 ------GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-------------  157 (202)
Q Consensus       117 ------~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-------------  157 (202)
                            ...+|||++|||+++.|++|||++|||+||+|+.|.-.                    +++             
T Consensus       212 ~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~  291 (362)
T d1pvna1         212 KYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGG  291 (362)
T ss_dssp             HHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSS
T ss_pred             HhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeeccceeeeeeccccccccccccccccc
Confidence                  12599999999999999999999999999999988731                    110             


Q ss_pred             -------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 -------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 -------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                             +|.       -.+.+++..|..+||..|.++|+++|+||+++
T Consensus       292 ~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~  340 (362)
T d1pvna1         292 KQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK  340 (362)
T ss_dssp             CSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred             cccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence                   011       14889999999999999999999999999864

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.72  E-value=2.7e-17  Score=138.92  Aligned_cols=128  Identities=18%  Similarity=0.198  Sum_probs=102.6

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc---C-HHHHHHHHHcCCcEEEeeccC-cCC---C---------------CC--
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL---T-AEDAKIGVEMGASAIMVSNHG-GRQ---L---------------DY--  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~---~-~~~a~~l~~aG~d~I~v~~~g-g~~---~---------------~~--  101 (202)
                      .||+...++++++++.+++||++|+..   + .+.++.+.++|+|++++.|+. ++.   .               .+  
T Consensus       154 ~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~  233 (312)
T d1gtea2         154 QDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGV  233 (312)
T ss_dssp             GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEE
T ss_pred             hhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccc
Confidence            467777889999999999999999873   2 455788899999999998752 110   0               01  


Q ss_pred             -cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        102 -VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       102 -~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                       ++    .+.+.+.++++.++ ++|||++|||++++|+.+++++|||+|+++|++++    +|+    .+++.+.++|+.
T Consensus       234 sG~~i~~~al~~v~~~~~~~~-~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~----~G~----~~i~~i~~~L~~  304 (312)
T d1gtea2         234 SGTAIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDF----TVIQDYCTGLKA  304 (312)
T ss_dssp             ESGGGHHHHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT----SCT----THHHHHHHHHHH
T ss_pred             cCcCcchhhHHHHHHHHHHcC-CCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhc----cCh----HHHHHHHHHHHH
Confidence             11    23556777777663 59999999999999999999999999999999985    577    577899999999


Q ss_pred             HHHHhCC
Q psy16780        177 ALALSGC  183 (202)
Q Consensus       177 ~m~~~G~  183 (202)
                      +|...|+
T Consensus       305 ~m~~~g~  311 (312)
T d1gtea2         305 LLYLKSI  311 (312)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9999987

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.71  E-value=5e-17  Score=136.48  Aligned_cols=179  Identities=18%  Similarity=0.171  Sum_probs=128.2

Q ss_pred             hhhhhhcccc---ccCCcceecccCCCccccc--------CCCCcchhH----------HHhhhccCccccHHHHHHHHH
Q psy16780          3 IYWMKSSLVC---LVLSQYLLANFSGKLSQLS--------NTSDSSSLL----------AYITSQLDETINWSDVTWLKT   61 (202)
Q Consensus         3 ~~~~~~~~~~---~~p~~~~~~n~~~~~~~~~--------~~~~~~~~~----------~~~~~~~d~~~~~~~i~~i~~   61 (202)
                      .+|++..++.   ..|+.++++|++.....+.        +...++.+.          ..-....+++...++++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~  161 (311)
T d1ep3a_          82 EVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKA  161 (311)
T ss_dssp             HHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhcccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHh
Confidence            3566555444   4677888888876432111        011111111          011224466667778888999


Q ss_pred             hcCCCEEEEecc----CHHHHHHHHHcCCcEEEeeccCcCC---------C----C---Ccc----chHHHHHHHHHHhC
Q psy16780         62 ITKLPIVLKGIL----TAEDAKIGVEMGASAIMVSNHGGRQ---------L----D---YVP----ASIEALPEIAKAVG  117 (202)
Q Consensus        62 ~~~~Pv~vK~~~----~~~~a~~l~~aG~d~I~v~~~gg~~---------~----~---~~~----~~~~~l~~i~~~~~  117 (202)
                      ..++|+++|...    ..+.++.+.++|++++++.++.+..         .    .   +++    .+++.+.++++.+ 
T Consensus       162 ~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~-  240 (311)
T d1ep3a_         162 VSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-  240 (311)
T ss_dssp             HCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-
T ss_pred             ccCCCeeeeecccccchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc-
Confidence            999999999872    4678899999999999998753211         0    0   111    2355666666655 


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                       ++|||++|||+|++|+.+++.+|||+||+||+++.     ++    .+++.+.++|+.+|+..|+++++|++++
T Consensus       241 -~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~-----~P----~i~~~I~~~L~~~m~~~g~~si~e~~g~  305 (311)
T d1ep3a_         241 -DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DP----FVCPKIIDKLPELMDQYRIESLESLIQE  305 (311)
T ss_dssp             -SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CT----THHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             -ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc-----CC----hHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence             89999999999999999999999999999999874     34    3568899999999999999999999875

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=99.70  E-value=2e-16  Score=146.24  Aligned_cols=144  Identities=24%  Similarity=0.276  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhc-CCCEEEEeccC---HHHHHHHHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh----
Q psy16780         53 WSDVTWLKTIT-KLPIVLKGILT---AEDAKIGVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV----  116 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~vK~~~~---~~~a~~l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~----  116 (202)
                      .+.|.++|+.. +.||.||++..   ...+..+.++|+|+|+|+|+ |||..       +.|.|....|.++.+.+    
T Consensus       559 ~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~g  638 (771)
T d1ea0a2         559 AQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNR  638 (771)
T ss_dssp             HHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcC
Confidence            45788888876 89999999732   35566677999999999997 55542       23567777788776654    


Q ss_pred             -CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc---------------------------ChHHHHHHHH
Q psy16780        117 -GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS---------------------------GKSGVRKVLD  168 (202)
Q Consensus       117 -~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~---------------------------G~~~v~~~i~  168 (202)
                       +++|.++++||++++.|+++++++|||+|.+||++++++.|.                           .++.+.+++.
T Consensus       639 lr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~  718 (771)
T d1ea0a2         639 LRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFT  718 (771)
T ss_dssp             CTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHH
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccCcHHHHHHHHH
Confidence             568999999999999999999999999999999999987652                           1477999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHhhh-hccccc
Q psy16780        169 ILINEFDQALALSGCTSVGEIQ-REMVVH  196 (202)
Q Consensus       169 ~l~~~L~~~m~~~G~~~i~el~-~~~~~~  196 (202)
                      .+.++++.+|..+|.++++|+. +.+++.
T Consensus       719 ~~~~e~~~~~~~~G~~s~~~lvG~~dll~  747 (771)
T d1ea0a2         719 FLAEEVREILAGLGFRSLNEVIGRTDLLH  747 (771)
T ss_dssp             HHHHHHHHHHHHHTCSCSGGGTTCGGGEE
T ss_pred             HHHHHHHHHHHHHcCCCHHHhccchhhhh
Confidence            9999999999999999999985 446543

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=1.2e-16  Score=139.88  Aligned_cols=120  Identities=17%  Similarity=0.173  Sum_probs=98.4

Q ss_pred             CCEEEEecc--C----HHHHHHHHHcCCcEEEeeccC-cCC-------CCCc-------cchHHHHHHHHHHhCCCcEEE
Q psy16780         65 LPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHG-GRQ-------LDYV-------PASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        65 ~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~g-g~~-------~~~~-------~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .||++|++.  +    .+.++.+.+.|+|++++.|+. ++.       ..++       +.....+.++++.+++++|||
T Consensus       267 ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipII  346 (409)
T d1tv5a1         267 PLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPII  346 (409)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEE
T ss_pred             CceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEE
Confidence            389999984  3    355678899999999999853 111       1122       224556778888887789999


Q ss_pred             EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        124 LDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                      ++|||.|++|+++.+.+||++|+++|.+++    +|+    .+++.+.++|+.+|...|+++++|+++.
T Consensus       347 GvGGI~s~~Da~e~i~AGAs~VQv~T~li~----~Gp----~~v~~I~~~L~~~l~~~g~~~i~e~iG~  407 (409)
T d1tv5a1         347 ASGGIFSGLDALEKIEAGASVCQLYSCLVF----NGM----KSAVQIKRELNHLLYQRGYYNLKEAIGR  407 (409)
T ss_dssp             EESSCCSHHHHHHHHHTTEEEEEESHHHHH----HGG----GHHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred             EECCCCCHHHHHHHHHcCCCHHhhhhHHHh----cCh----HHHHHHHHHHHHHHHHcCCCCHHHhcCC
Confidence            999999999999999999999999999986    477    4678999999999999999999999986

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=7.7e-17  Score=139.45  Aligned_cols=145  Identities=20%  Similarity=0.245  Sum_probs=114.3

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC-C
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG-H  118 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~  118 (202)
                      .+......+.++++++..++||++..+.+++.+..+  .|+|+|.|+-++|..      .--+.|.+.++.++.+... .
T Consensus       138 ~Gh~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~~~l--~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~  215 (368)
T d2cu0a1         138 HAHNLKAIKSMKEMRQKVDADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEY  215 (368)
T ss_dssp             CCCCHHHHHHHHHHHHTCCSEEEEEEECCHHHHTTC--TTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhcccceeeccccCHHHHHhh--hcCcceeecccCcccccchhhcccccchHHHHHHHHHHHhcc
Confidence            456666678999999999999999999999888654  699999997665531      1235677777777654431 1


Q ss_pred             CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh-----------------------------------------
Q psy16780        119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH-----------------------------------------  157 (202)
Q Consensus       119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~-----------------------------------------  157 (202)
                      .+|||++|||+++.|++|||++|||+||+|++|-....+                                         
T Consensus       216 ~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~  295 (368)
T d2cu0a1         216 GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTR  295 (368)
T ss_dssp             TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCS
T ss_pred             CCeeEecCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCcccccccccCCccccccccccccc
Confidence            699999999999999999999999999999987631000                                         


Q ss_pred             ----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780        158 ----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE  192 (202)
Q Consensus       158 ----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~  192 (202)
                          +|.       -.+.+++..|..+||..|.++|+++|+||+++
T Consensus       296 ~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~  341 (368)
T d2cu0a1         296 KFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK  341 (368)
T ss_dssp             CSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred             ccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhhC
Confidence                110       13689999999999999999999999999865

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=99.68  E-value=3.8e-16  Score=144.86  Aligned_cols=143  Identities=21%  Similarity=0.185  Sum_probs=115.5

Q ss_pred             HHHHHHHHHhc-CCCEEEEecc--C-HHHHHHHHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh----
Q psy16780         53 WSDVTWLKTIT-KLPIVLKGIL--T-AEDAKIGVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV----  116 (202)
Q Consensus        53 ~~~i~~i~~~~-~~Pv~vK~~~--~-~~~a~~l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~----  116 (202)
                      .+.|.++|+.. +.||.||++.  . ...+..+.++|+|+|+|+|+ |||..       +-|.|....|.++.+.+    
T Consensus       586 ~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~g  665 (809)
T d1ofda2         586 AQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQ  665 (809)
T ss_dssp             HHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHHHcC
Confidence            45788888776 7899999983  2 34455667899999999997 55643       23566666777776554    


Q ss_pred             -CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc---------------------------ChHHHHHHHH
Q psy16780        117 -GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS---------------------------GKSGVRKVLD  168 (202)
Q Consensus       117 -~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~---------------------------G~~~v~~~i~  168 (202)
                       +++|.++++||++|+.|++|++++|||+|.+||.++.++.|.                           .++.|.+++.
T Consensus       666 lR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~~~~~~~~v~n~~~  745 (809)
T d1ofda2         666 LRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFY  745 (809)
T ss_dssp             CGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHHHHhhCcCcHHHHHHHHH
Confidence             457999999999999999999999999999999999987542                           1467999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHhhhhc-ccc
Q psy16780        169 ILINEFDQALALSGCTSVGEIQRE-MVV  195 (202)
Q Consensus       169 ~l~~~L~~~m~~~G~~~i~el~~~-~~~  195 (202)
                      .+.+|++.+|+.+|.++++|+.+. ++.
T Consensus       746 ~~~~e~~~~~a~~G~~s~~elvGr~dll  773 (809)
T d1ofda2         746 FIAEEVRSLLAHLGYRSLDDIIGRTDLL  773 (809)
T ss_dssp             HHHHHHHHHHHHHTCSCGGGTTTCGGGE
T ss_pred             HHHHHHHHHHHHHcCCCHHHhcChHhhh
Confidence            999999999999999999998544 554

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-16  Score=135.78  Aligned_cols=123  Identities=20%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             cCCCEEEEecc--CH----HHHHHHHHcCCcEEEeeccCc-CC--------C-CC---c----cchHHHHHHHHHHhCCC
Q psy16780         63 TKLPIVLKGIL--TA----EDAKIGVEMGASAIMVSNHGG-RQ--------L-DY---V----PASIEALPEIAKAVGHK  119 (202)
Q Consensus        63 ~~~Pv~vK~~~--~~----~~a~~l~~aG~d~I~v~~~gg-~~--------~-~~---~----~~~~~~l~~i~~~~~~~  119 (202)
                      .++|+++|+..  +.    +.++.+.++|+++|++.|+.. ..        . .+   +    +.....+..+++..+.+
T Consensus       219 ~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~  298 (367)
T d1d3ga_         219 HRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGR  298 (367)
T ss_dssp             GCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTC
T ss_pred             cCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCC
Confidence            47899999984  32    347788999999999987521 10        0 11   1    22445667777777678


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                      +|||++|||.+++|+.+.+.+|||+|+++|.+++    .|+    .++..+.++|+.+|...|+++++|+++..
T Consensus       299 ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~----~Gp----~ii~~I~~~L~~~l~~~G~~si~dl~G~a  364 (367)
T d1d3ga_         299 VPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGP----PVVGKVKRELEALLKEQGFGGVTDAIGAD  364 (367)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCT----HHHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred             ccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHh----cCc----HHHHHHHHHHHHHHHHcCCCCHHHhcChh
Confidence            9999999999999999999999999999999876    477    57789999999999999999999999863

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.57  E-value=5.2e-15  Score=124.63  Aligned_cols=137  Identities=18%  Similarity=0.163  Sum_probs=99.9

Q ss_pred             cCccccHHHHHHHHHhcCCCEEEEecc--CHHH----HHHHHHc-CCcEEEeeccCcC---------C--C-----CC--
Q psy16780         47 LDETINWSDVTWLKTITKLPIVLKGIL--TAED----AKIGVEM-GASAIMVSNHGGR---------Q--L-----DY--  101 (202)
Q Consensus        47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--~~~~----a~~l~~a-G~d~I~v~~~gg~---------~--~-----~~--  101 (202)
                      .|++...++++++++.+++|+++|+..  +...    +..+.+. +++++...++-++         .  .     .+  
T Consensus       141 ~~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGl  220 (312)
T d2b4ga1         141 YDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGL  220 (312)
T ss_dssp             GCHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEE
T ss_pred             ccHHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCc
Confidence            356667778999999999999999974  2221    2333333 3444444332110         0  0     01  


Q ss_pred             -ccc----hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        102 -VPA----SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       102 -~~~----~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                       +++    ....+.++++.++ ..|||++|||+|++|+.+.+.+||++|+++|++++    +|+    .+++.+.++|+.
T Consensus       221 SG~~l~~~al~~v~~~~~~~~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~----~Gp----~~i~~i~~~L~~  291 (312)
T d2b4ga1         221 GGKYVLPTALANVNAFFRRCP-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHD----EGP----IIFARLNKELQE  291 (312)
T ss_dssp             EEGGGHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHH----HCT----THHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHcC-CCceeecCCcCCHHHHHHHHHcCCChheeehhhHh----cCc----HHHHHHHHHHHH
Confidence             122    3445666666653 57899999999999999999999999999999986    477    577899999999


Q ss_pred             HHHHhCCCCHHhhhhc
Q psy16780        177 ALALSGCTSVGEIQRE  192 (202)
Q Consensus       177 ~m~~~G~~~i~el~~~  192 (202)
                      +|+..|+++++|+++.
T Consensus       292 ~l~~~G~~si~e~~G~  307 (312)
T d2b4ga1         292 IMTNKGYKTLDEFRGR  307 (312)
T ss_dssp             HHHHHTCCSGGGTTTC
T ss_pred             HHHHcCCCCHHHHcCe
Confidence            9999999999999986

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.1e-14  Score=122.70  Aligned_cols=143  Identities=20%  Similarity=0.194  Sum_probs=110.6

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      ..||+.+.++++.+++.+++||.+|.+.      +.+.++.+.++|++.++|+++...+...++++|+.++.+    ..+
T Consensus       104 l~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~----~~~  179 (305)
T d1vhna_         104 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVL----EKR  179 (305)
T ss_dssp             GSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGS----CCS
T ss_pred             ccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhh----hhh
Confidence            3689999999999999999999999972      357789999999999999887666667778888877654    347


Q ss_pred             cEEEEecCCCCHHHHHHHHH-hCCCEEEEcH-----HHHHHhh----hcC---hHHHHHHHHHHHHHHHHHHHHhCCC-C
Q psy16780        120 VDVYLDGGVRYGTDVFKALA-LGAKMVFVGR-----PALWGLA----HSG---KSGVRKVLDILINEFDQALALSGCT-S  185 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~-~GAd~V~ig~-----~~l~~~~----~~G---~~~v~~~i~~l~~~L~~~m~~~G~~-~  185 (202)
                      +|||++|||.|.+|+.+++. .|+|+||+||     ||++...    .++   .....+.++.+.++++......|.. .
T Consensus       180 ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~~  259 (305)
T d1vhna_         180 IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKA  259 (305)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCcchH
Confidence            99999999999999999997 6999999999     5555421    111   1234566677777777777777642 3


Q ss_pred             HHhhhhc
Q psy16780        186 VGEIQRE  192 (202)
Q Consensus       186 i~el~~~  192 (202)
                      +..+++.
T Consensus       260 l~~~rkh  266 (305)
T d1vhna_         260 VVEMRKF  266 (305)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            4455443

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.50  E-value=1.2e-13  Score=110.44  Aligned_cols=103  Identities=17%  Similarity=0.081  Sum_probs=83.3

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecC
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      ....++.+++++.....+++.+.+.+.+.++.+.++|+|+|.+++++.++.+..... ...+.+..+..  ++|||++||
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GG  191 (230)
T d1yxya1         114 GLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGK  191 (230)
T ss_dssp             CCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESC
T ss_pred             hhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC--CCeEEEeCC
Confidence            334578899999888888888899999999999999999999988766554443322 22344444444  899999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |+|++|+.+++++|||+|++||++.+
T Consensus       192 I~t~~d~~~al~~GAd~V~vGsAi~~  217 (230)
T d1yxya1         192 IHSPEEAKKINDLGVAGIVVGGAITR  217 (230)
T ss_dssp             CCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred             CCCHHHHHHHHHcCCCEEEEChhhcC
Confidence            99999999999999999999999863

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.44  E-value=9.4e-13  Score=104.30  Aligned_cols=100  Identities=20%  Similarity=0.214  Sum_probs=83.3

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC----ccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY----VPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~----~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      ..+.++.+++....+++...+.+.++++.+.+.|+|+|.+.+++++....    ..+.++.+.++++.+  ++|||++||
T Consensus       106 ~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GG  183 (222)
T d1y0ea_         106 LDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGN  183 (222)
T ss_dssp             HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESS
T ss_pred             HHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCC
Confidence            46688888888888888888899999999999999999987765443322    233566777777776  899999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      |+|++|+.+++++|||+|++||++.+
T Consensus       184 I~t~~d~~~~~~~GAdgV~iGsAi~r  209 (222)
T d1y0ea_         184 VITPDMYKRVMDLGVHCSVVGGAITR  209 (222)
T ss_dssp             CCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred             CCCHHHHHHHHHcCCCEEEEchhhcC
Confidence            99999999999999999999999863

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3.4e-12  Score=108.26  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=77.6

Q ss_pred             HhcCCCEEEEecc--C----HHHHHHHHHcCCcEEEeeccC-cCC---------CCC---cc----chHHHHHHHHHHhC
Q psy16780         61 TITKLPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHG-GRQ---------LDY---VP----ASIEALPEIAKAVG  117 (202)
Q Consensus        61 ~~~~~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~g-g~~---------~~~---~~----~~~~~l~~i~~~~~  117 (202)
                      ...++||++|+..  +    .+.+..+.+.|++++...|.. ++.         ..+   |+    .+...+.++++.++
T Consensus       208 ~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~  287 (336)
T d1f76a_         208 HHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELN  287 (336)
T ss_dssp             HTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHT
T ss_pred             ccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcC
Confidence            3458999999984  2    244667788999999988742 111         012   12    24455677777777


Q ss_pred             CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHH
Q psy16780        118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINE  173 (202)
Q Consensus       118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~  173 (202)
                      .++|||++|||.|++|+.+.+.+||++|++||++++    +|+.    +++++.+|
T Consensus       288 ~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~----~Gp~----ii~~I~~e  335 (336)
T d1f76a_         288 GRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF----KGPP----LIKEIVTH  335 (336)
T ss_dssp             TSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCHH----HHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh----cChH----HHHHHHhh
Confidence            789999999999999999999999999999999876    4774    44555544

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.02  E-value=1.6e-09  Score=91.79  Aligned_cols=101  Identities=21%  Similarity=0.184  Sum_probs=79.5

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec--------cC----HHHHHHHHHcCCcEEEeeccCcCCCC--Ccc-chHHHHHHHHHH
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI--------LT----AEDAKIGVEMGASAIMVSNHGGRQLD--YVP-ASIEALPEIAKA  115 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~--------~~----~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~-~~~~~l~~i~~~  115 (202)
                      |..++++.||+.++.|++++++        .+    .+.++.+.++|+|.+.++.......+  ..+ ........+++.
T Consensus       195 f~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~  274 (337)
T d1z41a1         195 FLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ  274 (337)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHh
Confidence            5688999999999999999986        12    34578889999999999764321111  111 233445667777


Q ss_pred             hCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        116 VGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       116 ~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +  ++||+++|+|++++++.++|+.| ||+|++||+|+.
T Consensus       275 ~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia  311 (337)
T d1z41a1         275 A--DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR  311 (337)
T ss_dssp             H--CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred             c--CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHh
Confidence            7  79999999999999999999998 999999999996

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.84  E-value=8e-09  Score=87.35  Aligned_cols=102  Identities=10%  Similarity=-0.014  Sum_probs=75.3

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEecc---------C----HHHHHHHHHcCCcEEEeeccCcCCC---------CCccch
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGIL---------T----AEDAKIGVEMGASAIMVSNHGGRQL---------DYVPAS  105 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~~---------~----~~~a~~l~~aG~d~I~v~~~gg~~~---------~~~~~~  105 (202)
                      .|..+++++||+.+  ++||.+|+..         +    ...+..+.+.|+|.+.++...-...         ......
T Consensus       200 Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~  279 (340)
T d1djqa1         200 RFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHT  279 (340)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTT
T ss_pred             HHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCcccc
Confidence            34788999999998  5789999751         1    2335677899999999976321110         011123


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        106 IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       106 ~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ......+++.+  ++|||++|||++++++.++++.| ||+|++||+|+.
T Consensus       280 ~~~~~~ik~~~--~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia  326 (340)
T d1djqa1         280 IPWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA  326 (340)
T ss_dssp             HHHHHHHHTTC--SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred             HHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHH
Confidence            33445565555  79999999999999999999999 999999999996

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.81  E-value=6.1e-08  Score=78.47  Aligned_cols=102  Identities=13%  Similarity=0.273  Sum_probs=81.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC--c--------------------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG--G--------------------------------   96 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g--g--------------------------------   96 (202)
                      +.+.+..+++.+++||..|.- .++.++..+..+|||+|.+...-  .                                
T Consensus        91 s~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~  170 (247)
T d1a53a_          91 SYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALR  170 (247)
T ss_dssp             CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHH
T ss_pred             chHHHHHHHhccccceeecccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHh
Confidence            789999999999999999964 78899999999999999875321  0                                


Q ss_pred             ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                |.+..-..+.....++...++.++.+|+.|||.+++|+.++..+|+|+|.||+++++
T Consensus       171 ~~a~iIGINnRnL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk  237 (247)
T d1a53a_         171 IGARFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMR  237 (247)
T ss_dssp             TTCSEEEEESBCTTTCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHH
T ss_pred             CCCCeEeeeccChhhhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcC
Confidence                      001111234455556666777789999999999999999999999999999999996

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.4e-08  Score=85.63  Aligned_cols=102  Identities=19%  Similarity=0.054  Sum_probs=74.5

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEec--------cC----HHHHHHHHHcCCcEEEeeccCcC--CCC-Cc--c--chHHH
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGI--------LT----AEDAKIGVEMGASAIMVSNHGGR--QLD-YV--P--ASIEA  108 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~--------~~----~~~a~~l~~aG~d~I~v~~~gg~--~~~-~~--~--~~~~~  108 (202)
                      .|..++|++||+.+  +.||.+|+.        .+    .+.++.+.++|+|.+.++.....  ... ..  +  .....
T Consensus       192 Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~  271 (330)
T d1ps9a1         192 RFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWV  271 (330)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHH
T ss_pred             HHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHH
Confidence            45788999999998  578888875        23    34567888999999998764211  111 11  1  11222


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ...+++.+  ++|||++|+|++++++.++++.| ||+|++||+|+.
T Consensus       272 ~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia  315 (330)
T d1ps9a1         272 TRKLKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA  315 (330)
T ss_dssp             HHHHTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred             HHHHHhhC--CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHh
Confidence            34444444  79999999999999999999998 999999999996

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=4.4e-08  Score=79.41  Aligned_cols=100  Identities=16%  Similarity=0.121  Sum_probs=79.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------CcCC------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--------------GGRQ------------------   98 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--------------gg~~------------------   98 (202)
                      ..+.++++.+.+++|+.+.+. .+.++++.+.++|++.|+++..              -|.+                  
T Consensus        62 ~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~  141 (253)
T d1thfd_          62 MLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVF  141 (253)
T ss_dssp             HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeee
Confidence            467899999999999999865 7899999999999999998631              0100                  


Q ss_pred             ---C------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         99 ---L------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        99 ---~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                         +                              ++  ..++.+.+..+++..  ++|++++||+++.+|+.++...|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~~g~~  219 (253)
T d1thfd_         142 TYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGAD  219 (253)
T ss_dssp             ETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             eeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCccccccccccccc--cceEEEecCCCCHHHHHHHHHCCCC
Confidence               0                              11  124566666665443  7999999999999999999999999


Q ss_pred             EEEEcHHHHH
Q psy16780        144 MVFVGRPALW  153 (202)
Q Consensus       144 ~V~ig~~~l~  153 (202)
                      +|.+|++|.+
T Consensus       220 gvivgsal~~  229 (253)
T d1thfd_         220 AALAASVFHF  229 (253)
T ss_dssp             EEEESHHHHT
T ss_pred             EEEEchHHHc
Confidence            9999999875

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=7.3e-08  Score=77.98  Aligned_cols=100  Identities=22%  Similarity=0.193  Sum_probs=80.7

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------CcCC------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--------------GGRQ------------------   98 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--------------gg~~------------------   98 (202)
                      ..+.++.+.+.+.+|+.+.+- .+.++++.+.++|++.|+++..              -|.+                  
T Consensus        62 ~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~  141 (251)
T d1ka9f_          62 LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVH  141 (251)
T ss_dssp             HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEE
Confidence            457899999999999999864 7899999999999999998631              0100                  


Q ss_pred             ---C------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         99 ---L------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        99 ---~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                         +                              ++  ..++.+.+..+.+..  ++|+|++||+++.+|+.++...|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~~g~~  219 (251)
T d1ka9f_         142 VAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAE  219 (251)
T ss_dssp             ETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             eccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhhc--ceeEEEecCCCCHHHHHHHHHCCCC
Confidence               0                              11  125677777777665  7999999999999999999999999


Q ss_pred             EEEEcHHHHH
Q psy16780        144 MVFVGRPALW  153 (202)
Q Consensus       144 ~V~ig~~~l~  153 (202)
                      +|.+|++|.+
T Consensus       220 gviig~al~~  229 (251)
T d1ka9f_         220 AALAASVFHF  229 (251)
T ss_dssp             EEEESHHHHT
T ss_pred             EEEEhHHHHc
Confidence            9999999875

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.61  E-value=1.9e-07  Score=75.61  Aligned_cols=101  Identities=23%  Similarity=0.288  Sum_probs=80.7

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------CcCC-----------------
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--------------GGRQ-----------------   98 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--------------gg~~-----------------   98 (202)
                      ..++.++++.+.+.+|+.+.+. .+.++++.+.++|++.|++...              -|.+                 
T Consensus        63 ~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v  142 (252)
T d1h5ya_          63 TFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEV  142 (252)
T ss_dssp             HHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEE
T ss_pred             cHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEE
Confidence            3467899999999999999875 7899999999999999998521              0100                 


Q ss_pred             ----C------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780         99 ----L------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA  142 (202)
Q Consensus        99 ----~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA  142 (202)
                          +                              ++  ..++.+.+.++++..  ++|++++||+++.+|+.++...|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~~g~  220 (252)
T d1h5ya_         143 YVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGA  220 (252)
T ss_dssp             EETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTC
T ss_pred             EEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCC
Confidence                0                              11  124667777776665  799999999999999999999999


Q ss_pred             CEEEEcHHHHH
Q psy16780        143 KMVFVGRPALW  153 (202)
Q Consensus       143 d~V~ig~~~l~  153 (202)
                      ++|.+|++|.+
T Consensus       221 ~gv~~gs~l~~  231 (252)
T d1h5ya_         221 DAVLAASLFHF  231 (252)
T ss_dssp             SEEEESHHHHT
T ss_pred             CEEEEhhHHHc
Confidence            99999999985

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=98.59  E-value=2.9e-07  Score=77.22  Aligned_cols=49  Identities=16%  Similarity=0.102  Sum_probs=42.9

Q ss_pred             cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780        103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus       103 ~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~  153 (202)
                      .++.+.+..+.+.+  ++|||++||+++.+|+.+++.. |+++|.+|+.|.+
T Consensus       250 G~D~el~~~i~~~~--~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~  299 (323)
T d1jvna1         250 GYDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR  299 (323)
T ss_dssp             CCCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred             ccchhHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHc
Confidence            35777888887776  7999999999999999999875 7999999999986

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.57  E-value=1.3e-07  Score=75.85  Aligned_cols=100  Identities=18%  Similarity=0.232  Sum_probs=78.3

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC--------------cCC----------------C-
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG--------------GRQ----------------L-   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g--------------g~~----------------~-   99 (202)
                      ..+.++.+.+.+.+|+.+.+. .+.++++.+.+.|++.|+++...              |.+                + 
T Consensus        62 ~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~  141 (239)
T d1vzwa1          62 NRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWT  141 (239)
T ss_dssp             CHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSC
T ss_pred             hHHHHHHHHhhcCcceEeecccccchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccce
Confidence            567899999999999999975 78999999999999999986310              000                0 


Q ss_pred             ----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh---CCCEEE
Q psy16780        100 ----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL---GAKMVF  146 (202)
Q Consensus       100 ----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~---GAd~V~  146 (202)
                                                  ++  ..++.+.+..+++..  ++|++++|||++.+|+.++-.+   |+++|.
T Consensus       142 ~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvi  219 (239)
T d1vzwa1         142 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAI  219 (239)
T ss_dssp             CCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred             eeccccchhhhhhhhccccEEEEEeecccceecCCcchhhhhhhhcc--CceEEEECCCCCHHHHHHHHhhhhCCccEee
Confidence                                        11  135666777776654  7999999999999999887554   999999


Q ss_pred             EcHHHHH
Q psy16780        147 VGRPALW  153 (202)
Q Consensus       147 ig~~~l~  153 (202)
                      +|++|+.
T Consensus       220 vg~al~~  226 (239)
T d1vzwa1         220 VGKALYA  226 (239)
T ss_dssp             ECHHHHT
T ss_pred             EhHHHHC
Confidence            9999875

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.56  E-value=1.6e-06  Score=70.77  Aligned_cols=114  Identities=10%  Similarity=0.062  Sum_probs=82.6

Q ss_pred             HHhhhccCccccHHHHHHHHHhc-CCCEEEEecc-------CHHHHHHHHHcCCcEEEeeccC--------------c--
Q psy16780         41 AYITSQLDETINWSDVTWLKTIT-KLPIVLKGIL-------TAEDAKIGVEMGASAIMVSNHG--------------G--   96 (202)
Q Consensus        41 ~~~~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~-------~~~~a~~l~~aG~d~I~v~~~g--------------g--   96 (202)
                      ..+....+.+..++.++.+|+.. ++|+++=.-.       ..+.++.+.++|+|++++---.              |  
T Consensus        70 ~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~  149 (267)
T d1qopa_          70 RAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIA  149 (267)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCE
T ss_pred             hcccccchhhhhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCce
Confidence            34666777788899999999885 7998864321       1366889999999999984210              0  


Q ss_pred             --------CC----------------------CCCc----cc-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC
Q psy16780         97 --------RQ----------------------LDYV----PA-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG  141 (202)
Q Consensus        97 --------~~----------------------~~~~----~~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G  141 (202)
                              +.                      ..+.    .. -.+.+..+++..  ++||+.--||++++|+.+++..|
T Consensus       150 ~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~  227 (267)
T d1qopa_         150 PIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAG  227 (267)
T ss_dssp             EECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTT
T ss_pred             EEEEecccccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHHHHHhcC
Confidence                    00                      0011    11 123466666544  89999999999999999999999


Q ss_pred             CCEEEEcHHHHHHhh
Q psy16780        142 AKMVFVGRPALWGLA  156 (202)
Q Consensus       142 Ad~V~ig~~~l~~~~  156 (202)
                      ||+|.+||+++..+.
T Consensus       228 ADGvIVGSAivk~i~  242 (267)
T d1qopa_         228 AAGAISGSAIVKIIE  242 (267)
T ss_dssp             CSEEEECHHHHHHHH
T ss_pred             CCEEEECHHHHHHHH
Confidence            999999999998654

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.53  E-value=8.5e-07  Score=71.70  Aligned_cols=117  Identities=20%  Similarity=0.202  Sum_probs=83.9

Q ss_pred             HhhhccCccccHHHHHHHHHhcCCCEEEEecc-------CHHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780         42 YITSQLDETINWSDVTWLKTITKLPIVLKGIL-------TAEDAKIGVEMGASAIMVSNHG--------------G----   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~-------~~~~a~~l~~aG~d~I~v~~~g--------------g----   96 (202)
                      .+....+.+..++.++++|+..++|+++=.=.       -.+.++.+.++|+|++++---.              |    
T Consensus        58 Al~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I  137 (248)
T d1geqa_          58 ALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTV  137 (248)
T ss_dssp             HHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEE
T ss_pred             HHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceE
Confidence            45566688889999999999889998763321       1366889999999999883210              0    


Q ss_pred             ------CC-------------------C---CCc----cch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         97 ------RQ-------------------L---DYV----PAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        97 ------~~-------------------~---~~~----~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                            +.                   .   .+.    +.. .+.+.++++..  ++|++.--||++++|+.+++..|||
T Consensus       138 ~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~~~~~~~AD  215 (248)
T d1geqa_         138 FLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGAN  215 (248)
T ss_dssp             EEECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             EEecccchhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc--ccceeeecccCCHHHHHHHHhcCCC
Confidence                  00                   0   011    111 23466666654  7999998899999999999999999


Q ss_pred             EEEEcHHHHHHhhhcCh
Q psy16780        144 MVFVGRPALWGLAHSGK  160 (202)
Q Consensus       144 ~V~ig~~~l~~~~~~G~  160 (202)
                      +|.+||+++..+...+.
T Consensus       216 GvIVGSaiv~~i~~~~~  232 (248)
T d1geqa_         216 GVVVGSALVKIIGEKGR  232 (248)
T ss_dssp             EEEECHHHHHHHHHHGG
T ss_pred             EEEECHHHHHHHHHhCc
Confidence            99999999986544443

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.53  E-value=6.3e-07  Score=71.46  Aligned_cols=101  Identities=20%  Similarity=0.167  Sum_probs=76.0

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA  115 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~  115 (202)
                      ..++-+...+.++++++.++.+ .+|.+     ++.+.    ++.+.++|+|+|..|.+.+    ....+.+.+..+++.
T Consensus        97 ~~g~~~~v~~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~~  171 (225)
T d1mzha_          97 KSEKYDFVVEELKEIFRETPSA-VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA----PRGTTLEEVRLIKSS  171 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHTCTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS----SSCCCHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhccCc-eeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCC----CCCCCHHHHHHHHHH
Confidence            3466666777788888877544 35876     34443    4667899999999876422    223566677777777


Q ss_pred             hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        116 VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       116 ~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      +++++.|=++|||||.+|+.+++.+||+.++.++.
T Consensus       172 ~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~  206 (225)
T d1mzha_         172 AKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG  206 (225)
T ss_dssp             HTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             hCCCceEECcCCCCCHHHHHHHHHhchhheecCcH
Confidence            88889999999999999999999999998887664

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=98.52  E-value=5.9e-07  Score=70.97  Aligned_cols=103  Identities=21%  Similarity=0.217  Sum_probs=78.9

Q ss_pred             hhccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         44 TSQLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      ...+|.+...+.++.+++.++- ..+|.+     ++.+.    ++.+.++|+|+|..|.+.+    ....+.+.+..+++
T Consensus        96 ~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~  170 (211)
T d1ub3a_          96 AKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVR  170 (211)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCCC----CCCCCHHHHHHHHH
Confidence            4457777788889999988864 356876     45444    3567899999999876322    12356676777777


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      .+++++.|=++|||||.+++.+++.+||+.++..++.
T Consensus       171 ~~~~~~~iKasGGIrt~~~a~~~l~aGa~riGtSs~~  207 (211)
T d1ub3a_         171 VAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGV  207 (211)
T ss_dssp             HHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHH
T ss_pred             HhCCCceEECcCCCCCHHHHHHHHHHhhhHhccCcHH
Confidence            7778899999999999999999999999998876653

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.51  E-value=6.2e-07  Score=71.69  Aligned_cols=97  Identities=21%  Similarity=0.110  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .+.++.-+..+  +.-|..=...++-.++++.++|+..|---+. -|+.  .|..+...|+.+.+..  ++|||.++||.
T Consensus       112 ~etl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGSg--~Gl~n~~~l~~i~~~~--~vPvIvDAGIG  187 (251)
T d1xm3a_         112 VETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIG  187 (251)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCC
T ss_pred             HHHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhcC--CCcCChHHHHHHHhcC--CccEEEecCCC
Confidence            44555544433  5666655557899999999999999876443 1221  2456778888888776  89999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ++.|+.+++++|||+|.+.+++..
T Consensus       188 ~pSdAa~AMElG~daVLvNTAIA~  211 (251)
T d1xm3a_         188 SPKDAAYAMELGADGVLLNTAVSG  211 (251)
T ss_dssp             SHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CHHHHHHHHHccCCEEEechhhhc
Confidence            999999999999999999998864

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=1.3e-06  Score=70.77  Aligned_cols=101  Identities=20%  Similarity=0.234  Sum_probs=74.3

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--C-------------c-------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--G-------------G-------------------   96 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--g-------------g-------------------   96 (202)
                      +.+.+..+++.+++||..|.- .++.++..+..+|||+|.+...  +             |                   
T Consensus        94 s~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~  173 (254)
T d1vc4a_          94 SLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIALEA  173 (254)
T ss_dssp             CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCCccccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHhhhhcC
Confidence            789999999999999999965 7899999999999999987521  0             0                   


Q ss_pred             ---------CCCCC---ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         97 ---------RQLDY---VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        97 ---------~~~~~---~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                               |.+..   ...+...+..+....+.++.+|+.+||.+.+|+. .+..|+|+|.||+++++
T Consensus       174 ~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~-~l~~g~davLIGesLm~  241 (254)
T d1vc4a_         174 GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELK-ALEGLFDAVLIGTSLMR  241 (254)
T ss_dssp             TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHH-TTTTTCSEEEECHHHHT
T ss_pred             CCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCCHHHHH-HHHcCCCEEEEChhhcC
Confidence                     00111   1122223333333334468899999999999975 56789999999999996

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=6.8e-07  Score=72.26  Aligned_cols=101  Identities=22%  Similarity=0.255  Sum_probs=77.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC--c--------------------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG--G--------------------------------   96 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g--g--------------------------------   96 (202)
                      +.+.+..+++.+++||..|.- .++.++..+..+|||+|.+...-  .                                
T Consensus        89 s~~~l~~vr~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~  168 (251)
T d1i4na_          89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS  168 (251)
T ss_dssp             CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHT
T ss_pred             CHHHHHHHhhcccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhc
Confidence            688999999999999999964 78888999999999998875321  0                                


Q ss_pred             -----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         97 -----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        97 -----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                 |.+..-..+.....++...++.+..+|+.+||++++|+.. +..|+|+|.||+.++.
T Consensus       169 ~~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~-l~~G~davLIG~sLm~  235 (251)
T d1i4na_         169 VIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKD-LRGKVNAVLVGTSIMK  235 (251)
T ss_dssp             TCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHH-HTTTCSEEEECHHHHH
T ss_pred             ccccceeeeeecchhccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHH-HHhCCCEEEEChHHhC
Confidence                       0001111233344555566777889999999999999854 5789999999999997

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=1.1e-06  Score=70.99  Aligned_cols=101  Identities=24%  Similarity=0.218  Sum_probs=76.5

Q ss_pred             hhccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         44 TSQLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      ...++-+...+.|+.+++.++ +..+|.+     ++.+.    ++.+.++|+|+|..|.+.+    .+..+.+.+..+++
T Consensus       129 l~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf~----~~gat~e~V~~m~~  203 (251)
T d1o0ya_         129 LKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFG----TGGATAEDVHLMKW  203 (251)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS----SCCCCHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHHHHhCcceeeccCCCC----CCCcCHHHHHHHHH
Confidence            345677777888999988875 4467876     34333    4667899999999875422    23456666666667


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+++++.|=++|||+|.+|+.+++.+||+.++..+
T Consensus       204 ~~~~~~giKasGGIrt~~~a~~~i~aGa~riGtSs  238 (251)
T d1o0ya_         204 IVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS  238 (251)
T ss_dssp             HHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             HhCCCceEeccCCcCCHHHHHHHHHHhhHHhCCCc
Confidence            77888999999999999999999999999987655

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.2e-06  Score=70.85  Aligned_cols=101  Identities=19%  Similarity=0.226  Sum_probs=78.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCc----------------------------------
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGG----------------------------------   96 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg----------------------------------   96 (202)
                      ..+.+..+++.+++||..|.- .++.++..+..+|||+|-+...--                                  
T Consensus        96 s~~~l~~v~~~~~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~  175 (254)
T d1piia2          96 SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA  175 (254)
T ss_dssp             CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH
T ss_pred             CHHHHHHHHhccccccchhcccCcHHHHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHh
Confidence            678999999999999999964 789999999999999998753210                                  


Q ss_pred             ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                |.+..-..+.....++...++.+..+|+.+||++.+|+.. +..|+|+|.||+.++.
T Consensus       176 ~~a~iIGINnRnL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~-l~~g~davLiGeslm~  241 (254)
T d1piia2         176 LGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRE-LSHFANGFLIGSALMA  241 (254)
T ss_dssp             TTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHHHT
T ss_pred             hcccccCccccchhhhhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhC
Confidence                      0011112234444556666777889999999999999865 5789999999999996

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.39  E-value=7.1e-06  Score=66.58  Aligned_cols=135  Identities=14%  Similarity=0.104  Sum_probs=87.3

Q ss_pred             HHhhhccCccccHHHHHHHHHhcCCCEEEEeccCH---HHHHHHHHcCCcEEEeeccC--------------c-------
Q psy16780         41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTA---EDAKIGVEMGASAIMVSNHG--------------G-------   96 (202)
Q Consensus        41 ~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~---~~a~~l~~aG~d~I~v~~~g--------------g-------   96 (202)
                      ..+....+.+..++.++++|+..+.|+++=.-.++   ...+.+.++|+|++++-.-.              |       
T Consensus        70 rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lv  149 (261)
T d1rd5a_          70 RALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLT  149 (261)
T ss_dssp             HHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEE
T ss_pred             eccccCcchhhhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEe
Confidence            34666777778899999999988999886322111   11455677888888873210              0       


Q ss_pred             ---CC----------------------CCCc----cch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEE
Q psy16780         97 ---RQ----------------------LDYV----PAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus        97 ---~~----------------------~~~~----~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~  146 (202)
                         +.                      ..+.    ... .+.+..+++..  ++||+.--||++++|+.+....|||+|.
T Consensus       150 aPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~~gaDGvI  227 (261)
T d1rd5a_         150 TPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVI  227 (261)
T ss_dssp             CTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             ccCCchhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc--CCCeEEEcCCCCHHHHHHHHhcCCCEEE
Confidence               00                      0011    112 23566666654  8999999999999999999999999999


Q ss_pred             EcHHHHHHhhhcC-hHHHHHHHHHHHHHHHHH
Q psy16780        147 VGRPALWGLAHSG-KSGVRKVLDILINEFDQA  177 (202)
Q Consensus       147 ig~~~l~~~~~~G-~~~v~~~i~~l~~~L~~~  177 (202)
                      +||+|+..+.... .+...+.++.+.++|+..
T Consensus       228 VGSaiv~~i~~~~~~~~~~~~~~~~~~~lk~a  259 (261)
T d1rd5a_         228 IGSAMVRQLGEAASPKQGLRRLEEYARGMKNA  259 (261)
T ss_dssp             ECHHHHHHHHSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            9999998654322 122223344555555543

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.36  E-value=4.8e-06  Score=66.73  Aligned_cols=96  Identities=20%  Similarity=0.176  Sum_probs=70.6

Q ss_pred             HHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-cCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         54 SDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-GRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        54 ~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      +.++..+..+  +.-|..=...++-.++.+++.|+..+.--+.. |+.  .+..+...+..+.+..  ++|||.++||.+
T Consensus       115 etl~Aa~~Lv~egF~Vlpy~~~D~v~ak~le~~Gc~~vMplgsPIGsg--~Gi~n~~~l~~i~~~~--~vpvivdAGIg~  190 (243)
T d1wv2a_         115 ETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSG--LGICNPYNLRIILEEA--KVPVLVDAGVGT  190 (243)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCS
T ss_pred             HHHHHHHHhhcCceEEEeccCCCHHHHhHHHHcCceeeeecccccccc--cccccHHHHHhccccC--CcceEeecccCC
Confidence            4444444332  44455434468899999999999988765432 221  1344566677776665  899999999999


Q ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +.|+.+++++|||+|.+.|++..
T Consensus       191 psdaa~AMElG~dgVLvnsaIa~  213 (243)
T d1wv2a_         191 ASDAAIAMELGCEAVLMNTAIAH  213 (243)
T ss_dssp             HHHHHHHHHHTCSEEEESHHHHT
T ss_pred             HHHHHHHHHccCCEEEechHhhc
Confidence            99999999999999999999875

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=98.34  E-value=5.1e-06  Score=64.80  Aligned_cols=78  Identities=21%  Similarity=0.179  Sum_probs=62.2

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      .+.++++.+.+.|+|++.++.-.-|.  .+..+..++.+.++++..  ++||++-||| +.+++.+++.+||++|.+.+.
T Consensus       107 h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~  183 (206)
T d1xi3a_         107 YSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLKTGVDGIAVISA  183 (206)
T ss_dssp             SSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHTTTCSEEEESHH
T ss_pred             CCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHHHHHhCCCEEEEhHH
Confidence            67888999999999999997532221  122344677888887766  8999999998 777899999999999999999


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      ++.
T Consensus       184 I~~  186 (206)
T d1xi3a_         184 VMG  186 (206)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            874

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=2e-06  Score=67.39  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..++ .++|++- ++.|+.++..+.++|+|.+.+.-..       ......++.++.-+ +++|++.+||
T Consensus        88 sP~~~~~v~~~~~~-~~i~~iP-Gv~TpsEi~~A~~~G~~~lK~fPa~-------~~G~~~lk~l~~p~-p~i~~iptGG  157 (202)
T d1wa3a1          88 SPHLDEEISQFCKE-KGVFYMP-GVMTPTELVKAMKLGHTILKLFPGE-------VVGPQFVKAMKGPF-PNVKFVPTGG  157 (202)
T ss_dssp             CSSCCHHHHHHHHH-HTCEEEC-EECSHHHHHHHHHTTCCEEEETTHH-------HHHHHHHHHHHTTC-TTCEEEEBSS
T ss_pred             CCCCcHHHHHHHHh-cCCceeC-CcCcHHHHHHHHHCCCCEEEecchh-------hcCHHHHHHHhCcc-cCCcEEeeCC
Confidence            45555566776664 4788775 6789999999999999999984321       00113455554434 4799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      | +.+++.+.+.+||.+|++|+.+..
T Consensus       158 I-~~~n~~~~l~aga~avg~Gs~l~~  182 (202)
T d1wa3a1         158 V-NLDNVCEWFKAGVLAVGVGSALVK  182 (202)
T ss_dssp             C-CTTTHHHHHHHTCSCEEECHHHHC
T ss_pred             C-CHHHHHHHHHCCCeEEEEchhhcC
Confidence            9 789999999999999999998763

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=98.30  E-value=3.1e-06  Score=71.73  Aligned_cols=97  Identities=11%  Similarity=-0.054  Sum_probs=70.5

Q ss_pred             ccHHHHHHHHHhcC-CCEEEEecc------------CH----HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHH
Q psy16780         51 INWSDVTWLKTITK-LPIVLKGIL------------TA----EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEI  112 (202)
Q Consensus        51 ~~~~~i~~i~~~~~-~Pv~vK~~~------------~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i  112 (202)
                      |..|+++.||+.++ -+|.++.+.            +.    +.++.+.++|+|++.++...   ....++ .......+
T Consensus       212 f~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~~~~~~~~~~~  288 (363)
T d1vyra_         212 LVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD---LAGGKPYSEAFRQKV  288 (363)
T ss_dssp             HHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHH
T ss_pred             hHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCC---ccCCccccHHHHHHH
Confidence            57889999999984 457777651            12    33677889999999998532   122222 22334555


Q ss_pred             HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      ++.+  ++||++.| +.|++++.++|+.| ||+|++||+++.
T Consensus       289 ~~~~--~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~lia  327 (363)
T d1vyra_         289 RERF--HGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIA  327 (363)
T ss_dssp             HHHC--CSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHhc--CceEEecC-CCCHHHHHHHHHCCCcceehhhHHHHH
Confidence            6666  68888866 56999999999999 899999999996

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=7.4e-06  Score=65.36  Aligned_cols=97  Identities=22%  Similarity=0.176  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------Cc------------------CC--
Q psy16780         54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--------------GG------------------RQ--   98 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--------------gg------------------~~--   98 (202)
                      ..+..+++. ..|+.+.+- .+.++++.+.+.|+|.|+++..              ++                  +.  
T Consensus        64 ~~~~~~~~~-~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~  142 (241)
T d1qo2a_          64 PVLEKLSEF-AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEE  142 (241)
T ss_dssp             HHHHHGGGG-GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCS
T ss_pred             hheehhccc-ccchhhhhhhhhhhhhhhccccccceEecCcccccCchhhhhhcccccceeeecccccccccccCcccce
Confidence            345555544 579999874 7899999999999999988531              00                  00  


Q ss_pred             -C------------------------C--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC------CCEE
Q psy16780         99 -L------------------------D--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG------AKMV  145 (202)
Q Consensus        99 -~------------------------~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G------Ad~V  145 (202)
                       .                        +  ...++.+.+..+.+..  ++|+|++||+++.+|+.++..+|      +++|
T Consensus       143 ~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gv  220 (241)
T d1qo2a_         143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGV  220 (241)
T ss_dssp             CCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred             eeehhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhccC--CceEEEECCCCCHHHHHHHHHccccccCCEeeE
Confidence             0                        0  0135677777777666  79999999999999999998765      8899


Q ss_pred             EEcHHHHH
Q psy16780        146 FVGRPALW  153 (202)
Q Consensus       146 ~ig~~~l~  153 (202)
                      .+|++|+.
T Consensus       221 ivG~al~~  228 (241)
T d1qo2a_         221 IVGRAFLE  228 (241)
T ss_dssp             EECHHHHT
T ss_pred             EEHHHHHC
Confidence            99999974

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=8.7e-06  Score=64.70  Aligned_cols=101  Identities=26%  Similarity=0.245  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec---------cCc------------CCC-----------
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN---------HGG------------RQL-----------   99 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~---------~gg------------~~~-----------   99 (202)
                      -+.++++.+.+++||..|.. ...-.++.|...|+|++.=+-         |-.            +.+           
T Consensus        47 p~~i~ei~~~vsipvmak~righ~~eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgA  126 (254)
T d1znna1          47 PTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGA  126 (254)
T ss_dssp             HHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcccccccccCCCchHHHHhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHH
Confidence            45888999999999999986 567889999999999998652         100            000           


Q ss_pred             -------CCc------------------------------------cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH
Q psy16780        100 -------DYV------------------------------------PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK  136 (202)
Q Consensus       100 -------~~~------------------------------------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k  136 (202)
                             ..+                                    ....+.+.++.+.-+-.+|++++|||.++.|+..
T Consensus       127 amIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~  206 (254)
T d1znna1         127 SMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAAL  206 (254)
T ss_dssp             SEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHH
T ss_pred             HHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHH
Confidence                   000                                    0112223333332223699999999999999999


Q ss_pred             HHHhCCCEEEEcHHHHH
Q psy16780        137 ALALGAKMVFVGRPALW  153 (202)
Q Consensus       137 al~~GAd~V~ig~~~l~  153 (202)
                      ++.+|||+|.++|.+.+
T Consensus       207 ~MelG~dgV~v~s~I~~  223 (254)
T d1znna1         207 MMHLGADGVFVGSGIFK  223 (254)
T ss_dssp             HHHTTCSEEEECGGGGG
T ss_pred             HHHcCCCEEEEcchhhc
Confidence            99999999999998875

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=2.3e-05  Score=62.03  Aligned_cols=80  Identities=15%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             ccCHHHHHHHHHcCCcEEEeeccCcCC--CCCccc-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         72 ILTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPA-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        72 ~~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      +-+.++++.+.+.|+|++.++.-..+.  .+..++ ..+.+..+.+. ..++||++-||| +.+++.+++.+||++|.+.
T Consensus       122 ~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~-~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvi  199 (226)
T d2tpsa_         122 AHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ-GISIPIVGIGGI-TIDNAAPVIQAGADGVSMI  199 (226)
T ss_dssp             ECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT-TCCCCEEEESSC-CTTTSHHHHHTTCSEEEES
T ss_pred             ccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHh-cCCCCEEEecCC-CHHHHHHHHHhCCCEEEEh
Confidence            467899999999999999987532221  111222 34445555432 237999999999 8899999999999999999


Q ss_pred             HHHHH
Q psy16780        149 RPALW  153 (202)
Q Consensus       149 ~~~l~  153 (202)
                      +.++.
T Consensus       200 s~I~~  204 (226)
T d2tpsa_         200 SAISQ  204 (226)
T ss_dssp             HHHHT
T ss_pred             HHhhc
Confidence            99874

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=98.07  E-value=1.5e-05  Score=64.92  Aligned_cols=128  Identities=15%  Similarity=0.146  Sum_probs=83.9

Q ss_pred             HhhhccCccccHHHHHHHHHhcCCCEEEEecc-------CHHHHHHHHHcCCcEEEeeccCc------------------
Q psy16780         42 YITSQLDETINWSDVTWLKTITKLPIVLKGIL-------TAEDAKIGVEMGASAIMVSNHGG------------------   96 (202)
Q Consensus        42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~-------~~~~a~~l~~aG~d~I~v~~~gg------------------   96 (202)
                      .+....+.+..++.++++|+..+.|+++=.-.       -...++.+.++|+|++++-.-..                  
T Consensus        69 AL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I  148 (271)
T d1ujpa_          69 ALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETV  148 (271)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEE
T ss_pred             ccccccchhhHHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhcccccee
Confidence            46667788889999999999999998863321       13567889999999998742110                  


Q ss_pred             ------CC-------------C---------CCc----cc-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780         97 ------RQ-------------L---------DYV----PA-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK  143 (202)
Q Consensus        97 ------~~-------------~---------~~~----~~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd  143 (202)
                            +.             +         .+.    +. -.+.+..+++.  .++|++.-=||++++|+.++  .|||
T Consensus       149 ~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~--t~~Pv~vGFGIs~~e~v~~~--~~AD  224 (271)
T d1ujpa_         149 FLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKAR--TALPVAVGFGVSGKATAAQA--AVAD  224 (271)
T ss_dssp             CEECTTCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTT--CCSCEEEESCCCSHHHHHHH--TTSS
T ss_pred             eccCCCcchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhcc--ccCCeEEeCCCCCHHHHHHh--CCCC
Confidence                  00             0         011    11 12345555543  37998887799999998764  5999


Q ss_pred             EEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        144 MVFVGRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       144 ~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      +|.+||+|+..+....  ...++++.+++.++
T Consensus       225 GvIVGSAiV~~i~e~~--~~~~~~~~i~~~l~  254 (271)
T d1ujpa_         225 GVVVGSALVRALEEGR--SLAPLLQEIRQGLQ  254 (271)
T ss_dssp             EEEECHHHHHHHHTTC--CHHHHHHHHHHHHB
T ss_pred             EEEEcHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence            9999999998654332  23444444444444

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.05  E-value=1.4e-05  Score=67.71  Aligned_cols=99  Identities=12%  Similarity=-0.056  Sum_probs=69.9

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEecc----------C-----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGIL----------T-----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~~----------~-----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      |..|+|+.||+.+ +..|.++...          .     ...++.+...|++.+.++...-..... .........+++
T Consensus       215 f~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~  293 (374)
T d1gwja_         215 FPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDI-TYPEGFREQMRQ  293 (374)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCC-CCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCc-chhHHHHHHHHH
Confidence            5788999999998 4557777541          1     123455678899999887532111111 111123345667


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      .+  ++|||++|++ +++.+.++|+.| ||+|++||+++.
T Consensus       294 ~~--~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~ia  330 (374)
T d1gwja_         294 RF--KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA  330 (374)
T ss_dssp             HC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             Hc--CCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHH
Confidence            77  8999999999 799999999988 999999999996

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.02  E-value=2.1e-05  Score=62.78  Aligned_cols=96  Identities=18%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH-hCCC
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-VGHK  119 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-~~~~  119 (202)
                      ..++.+.++.+.+ ..+..+|.+     ++.+.    ++.+.++|+|+|.-|.+.+.    ...+...+..+.+. .+.+
T Consensus       117 ~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~~----~gat~~~~~~l~~~~~~~~  192 (234)
T d1n7ka_         117 AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYT----KGGDPVTVFRLASLAKPLG  192 (234)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSC----CCCSHHHHHHHHHHHGGGT
T ss_pred             hhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeecccccC----CCCCHHHHHHHHHHhcCCC
Confidence            3455555554433 234557876     35444    35578999999997653111    11122222222222 2336


Q ss_pred             cEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRP  150 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~  150 (202)
                      +.|-++|||||.+|+.+++.+||+-++..+.
T Consensus       193 vgIKasGGIrt~~~a~~~i~aGa~rIGtSs~  223 (234)
T d1n7ka_         193 MGVKASGGIRSGIDAVLAVGAGADIIGTSSA  223 (234)
T ss_dssp             CEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             CcEEeeCCcCCHHHHHHHHHccCceeecchH
Confidence            9999999999999999999999998876553

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.95  E-value=3.6e-05  Score=61.03  Aligned_cols=104  Identities=19%  Similarity=0.137  Sum_probs=70.1

Q ss_pred             hccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcC---------CCCCccchH
Q psy16780         45 SQLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGR---------QLDYVPASI  106 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~---------~~~~~~~~~  106 (202)
                      ..++-+...+.|+.+++.++ +..+|.+     ++.+.    ++.+.++|+|+|.-|.+-+.         .....+...
T Consensus        93 ~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~  171 (226)
T d1vcva1          93 KSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERA  171 (226)
T ss_dssp             HTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHH
T ss_pred             hCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccccccCcccCcHHHH
Confidence            34555666677888887774 4567876     34333    45577899999998754210         011112234


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-------CCCEEEEcH
Q psy16780        107 EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-------GAKMVFVGR  149 (202)
Q Consensus       107 ~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-------GAd~V~ig~  149 (202)
                      ..+.+..+..++++-|=++|||||.+++.+.+.+       ||+-++..+
T Consensus       172 ~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs  221 (226)
T d1vcva1         172 AAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST  221 (226)
T ss_dssp             HHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred             HHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCC
Confidence            4555555556678999999999999999999987       777776654

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=97.83  E-value=2.1e-05  Score=66.47  Aligned_cols=100  Identities=17%  Similarity=0.004  Sum_probs=62.6

Q ss_pred             ccHHHHHHHHHhcC-CCEEEEecc---------CHHH------HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780         51 INWSDVTWLKTITK-LPIVLKGIL---------TAED------AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK  114 (202)
Q Consensus        51 ~~~~~i~~i~~~~~-~Pv~vK~~~---------~~~~------a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~  114 (202)
                      |..|+|++||+.++ -+|+++.+.         +.++      ++.+...+++.+.++...-...............+++
T Consensus       210 f~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  289 (364)
T d1icpa_         210 FALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRK  289 (364)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHH
T ss_pred             HHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHH
Confidence            35789999999983 467877651         1122      2333445566666543211110001111222345566


Q ss_pred             HhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        115 AVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       115 ~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      .+  +.|+++.||+ +++++.++++.| ||+|++||+++.
T Consensus       290 ~~--~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ia  326 (364)
T d1icpa_         290 AY--KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS  326 (364)
T ss_dssp             HC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             hc--CCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHH
Confidence            66  7899998885 889999999986 999999999996

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=97.78  E-value=0.00035  Score=54.81  Aligned_cols=89  Identities=24%  Similarity=0.244  Sum_probs=61.3

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHH---HHHhCCCcEEEEecCCCCHHHHHHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEI---AKAVGHKVDVYLDGGVRYGTDVFKAL  138 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i---~~~~~~~ipiia~GGI~~~~D~~kal  138 (202)
                      ++.+++ .+.+.+.++.+.+.+.+.|..-..  .|+.....+...+.+..+   .....+++||+..|||.+..|+..++
T Consensus       114 gl~~iv-cvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~  192 (226)
T d1w0ma_         114 GLDVVV-CAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAAL  192 (226)
T ss_dssp             TCEEEE-EESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH
T ss_pred             CCEEEE-ecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHh
Confidence            555555 356778888888999888776432  233221112222222221   12234689999999999999999999


Q ss_pred             HhCCCEEEEcHHHHH
Q psy16780        139 ALGAKMVFVGRPALW  153 (202)
Q Consensus       139 ~~GAd~V~ig~~~l~  153 (202)
                      ..|+|+|.+|++++.
T Consensus       193 ~~g~dGvLVGsA~l~  207 (226)
T d1w0ma_         193 RLGTRGVLLASAAVK  207 (226)
T ss_dssp             HTTCSEEEECHHHHT
T ss_pred             cCCCCEEEechheec
Confidence            999999999999985

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=4.3e-05  Score=58.28  Aligned_cols=114  Identities=12%  Similarity=0.064  Sum_probs=69.3

Q ss_pred             HHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         55 DVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      .++..++ .+..+.+-..  .+.+.+..+.+.|++.+.+......+..+.......+..+++..+...++..+||++ .+
T Consensus        96 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~  173 (213)
T d1q6oa_          96 ALDVAKE-FNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LE  173 (213)
T ss_dssp             HHHHHHH-TTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GG
T ss_pred             HHHHHHH-cCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCCcC-cC
Confidence            4444433 3444444332  467888899999999887643210011111122233444444333478999999875 78


Q ss_pred             HHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      ++.+++.+|||.+.+||+++.+   ..+   .+.++.+++.++.
T Consensus       174 ~~~~~~~~Gad~iVVGr~I~~a---~dp---~~a~~~~~~~i~~  211 (213)
T d1q6oa_         174 DLPLFKGIPIHVFIAGRSIRDA---ASP---VEAARQFKRSIAE  211 (213)
T ss_dssp             GGGGGTTSCCSEEEESHHHHTS---SCH---HHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCEEEEChhhcCC---CCH---HHHHHHHHHHHHH
Confidence            8999999999999999998752   223   3455566666553

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=97.73  E-value=0.00031  Score=54.97  Aligned_cols=89  Identities=21%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeec--cCcCCCCCccc---hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSN--HGGRQLDYVPA---SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL  138 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~--~gg~~~~~~~~---~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal  138 (202)
                      ++.+++. +.+...++.+.+.+.+.|-.-.  .-|++....+.   ....+.+..+...+++||+..|||.++.|+..++
T Consensus       116 gl~~i~c-v~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~  194 (224)
T d1hg3a_         116 GLMTMVC-SNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAI  194 (224)
T ss_dssp             TCEEEEE-ESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH
T ss_pred             CCceeec-hhhHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHH
Confidence            5555543 4566777888888877765532  12222111111   2222222223456689999999999999999999


Q ss_pred             HhCCCEEEEcHHHHH
Q psy16780        139 ALGAKMVFVGRPALW  153 (202)
Q Consensus       139 ~~GAd~V~ig~~~l~  153 (202)
                      .+|+|+|.+|++++.
T Consensus       195 ~~g~dGvLVGsAsl~  209 (224)
T d1hg3a_         195 ELGTVGVLLASGVTK  209 (224)
T ss_dssp             HTTCSEEEESHHHHT
T ss_pred             hCCCCEEEEcceeec
Confidence            999999999999986

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.68  E-value=0.00021  Score=57.11  Aligned_cols=76  Identities=28%  Similarity=0.271  Sum_probs=60.3

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|+|.+.+..-.+. ..........+.++.+..  .+|+...||||+.+|+.+++.+||+-|.+++..+.
T Consensus        35 ~~~a~~~~~~gadei~ivDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~  110 (252)
T d1h5ya_          35 VEMAVRYEEEGADEIAILDITAA-PEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR  110 (252)
T ss_dssp             HHHHHHHHHTTCSCEEEEECCCC-TTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEecccc-ccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence            47788999999999887543221 122244566778887766  89999999999999999999999999999997664

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.67  E-value=0.00013  Score=56.33  Aligned_cols=115  Identities=21%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcCCCEEE--Eecc---C-HHHHHHHHHcCCcEEEeeccCcCC----------------CC-----------
Q psy16780         54 SDVTWLKTITKLPIVL--KGIL---T-AEDAKIGVEMGASAIMVSNHGGRQ----------------LD-----------  100 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~v--K~~~---~-~~~a~~l~~aG~d~I~v~~~gg~~----------------~~-----------  100 (202)
                      +.++++++..+.||++  |..-   + ...++.+.++|+|.++++..+|..                ++           
T Consensus        41 ~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~  120 (206)
T d2czda1          41 DIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL  120 (206)
T ss_dssp             THHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGG
T ss_pred             HHHHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccHH
Confidence            4688888777888874  5432   2 244677889999999998755421                00           


Q ss_pred             -----------------CccchHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcHHHHHHhhhcChHH
Q psy16780        101 -----------------YVPASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGRPALWGLAHSGKSG  162 (202)
Q Consensus       101 -----------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~  162 (202)
                                       ........+..+++..+.+..+++ .||+- +.+..+++.+|||.+.+||+++.+   ..+  
T Consensus       121 ~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~~~~~i~~-pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a---~dP--  194 (206)
T d2czda1         121 TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILA-PGIGAQGGKAKDAVKAGADYIIVGRAIYNA---PNP--  194 (206)
T ss_dssp             HHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEEE-CCCCSSTTHHHHHHHHTCSEEEECHHHHTS---SSH--
T ss_pred             HHHHHHHHHhcccccccccccCchhhhhhhhhhcccceEEC-CCccccCCCHHHHHHhCCCEEEEChhhccC---CCH--
Confidence                             001122233444444544555544 55543 557888899999999999999852   223  


Q ss_pred             HHHHHHHHHHHHH
Q psy16780        163 VRKVLDILINEFD  175 (202)
Q Consensus       163 v~~~i~~l~~~L~  175 (202)
                       .+.++.++++||
T Consensus       195 -~~aa~~i~~~ik  206 (206)
T d2czda1         195 -REAAKAIYDEIR  206 (206)
T ss_dssp             -HHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHhC
Confidence             345566666653

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=0.00016  Score=57.78  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|+|.+.+..-.+ ...+.....+.+.++++..  .+|+...||||+.+++.+.+.+||+-|.+|+..+.
T Consensus        33 ~~~a~~~~~~g~dei~ivDld~-~~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~  108 (253)
T d1thfd_          33 VELGKFYSEIGIDELVFLDITA-SVEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE  108 (253)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSC-SSSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeecc-cccCcccHHHHHHHHHhcc--CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence            3778999999999998854322 1112234556667776654  79999999999999999999999999999998774

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=4e-05  Score=61.62  Aligned_cols=100  Identities=24%  Similarity=0.274  Sum_probs=65.2

Q ss_pred             hccCccccHHHHHHHHHhc-CCCEEEEecc------CHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHH
Q psy16780         45 SQLDETINWSDVTWLKTIT-KLPIVLKGIL------TAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA  113 (202)
Q Consensus        45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~------~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~  113 (202)
                      ..++-+...+.++.+++.+ ..++.+|.++      +.+..    +.+.++|+|+|..|.+.+.. ...+.+...+.+..
T Consensus       111 ~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~~-gat~~~v~~m~~~i  189 (250)
T d1p1xa_         111 MAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAV-NATPESARIMMEVI  189 (250)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSSC-CCCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcCCC-CCCHHHHHHHHHHh
Confidence            3566666677888888765 4567788762      33332    45689999999987632110 01122333333332


Q ss_pred             HH--hCCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780        114 KA--VGHKVDVYLDGGVRYGTDVFKALALGAKMV  145 (202)
Q Consensus       114 ~~--~~~~ipiia~GGI~~~~D~~kal~~GAd~V  145 (202)
                      +.  .+.++.|-++|||||.+|+.+.+.+||+.+
T Consensus       190 ~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~i  223 (250)
T d1p1xa_         190 RDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELF  223 (250)
T ss_dssp             HHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHH
T ss_pred             hhhccCcceeeEecCCCCCHHHHHHHHHHHHHHh
Confidence            22  234799999999999999999999998744

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.65  E-value=0.00038  Score=52.45  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=67.3

Q ss_pred             HHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         54 SDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        54 ~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +.++.+++.. ..+|.| ++.+.++++.+.++|+|.|-++|.          +.+.+.++.+.+++++.+-+|||| +.+
T Consensus        68 ~~~~~~~~~~~~~~IeV-Ev~~~~~~~~a~~~g~diImLDN~----------~pe~~~~av~~i~~~~~lEaSGgI-~~~  135 (167)
T d1qapa1          68 QAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNV-TAE  135 (167)
T ss_dssp             HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCS-CHH
T ss_pred             hhhHHHhhcCCCceEEE-ecCcHHHHHHHHhcCCcEEEecCC----------CHHHHHHHHHhcCCceEEEEeCCC-CHH
Confidence            3566666554 455554 788999999999999999999874          234555555667778999999997 578


Q ss_pred             HHHHHHHhCCCEEEEcHHHH
Q psy16780        133 DVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.+....|+|.+.+|+...
T Consensus       136 ni~~ya~~GVD~IS~galt~  155 (167)
T d1qapa1         136 TLREFAETGVDFISVGALTK  155 (167)
T ss_dssp             HHHHHHHTTCSEEECSHHHH
T ss_pred             HHHHHHHcCCCEEECCcccC
Confidence            88888889999999998754

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=0.00017  Score=54.54  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             HHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780         54 SDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT  132 (202)
Q Consensus        54 ~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~  132 (202)
                      +.++.+++..+ .++.| ++.+.++++.+.++|+|.|-++|.+       +.......+..+...+.+.+-+|||| +.+
T Consensus        68 ~~i~~~k~~~~~~~I~V-Ev~s~~q~~~a~~~~~diImLDN~s-------p~~~k~~v~~~~~~~~~i~lEaSGgI-~~~  138 (169)
T d1qpoa1          68 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNFA-------VWQTQTAVQRRDSRAPTVMLESSGGL-SLQ  138 (169)
T ss_dssp             HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETCC-------HHHHHHHHHHHHHHCTTCEEEEESSC-CTT
T ss_pred             hhhhhhhhhcCCCceEE-EeccHHHhhhhhhcCCcEEEecCcC-------hHhHHHHHHHhhccCCeeEEEEeCCC-CHH
Confidence            46777777653 44554 7889999999999999999998852       33333222223334567889999999 778


Q ss_pred             HHHHHHHhCCCEEEEcHHH
Q psy16780        133 DVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~~~  151 (202)
                      .+.+....|+|.+.+|...
T Consensus       139 ni~~ya~~GvD~IS~galt  157 (169)
T d1qpoa1         139 TAATYAETGVDYLAVGALT  157 (169)
T ss_dssp             THHHHHHTTCSEEECGGGT
T ss_pred             HHHHHHHcCCCEEECCccc
Confidence            8988889999999999753

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.63  E-value=0.00057  Score=53.40  Aligned_cols=101  Identities=19%  Similarity=0.228  Sum_probs=70.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeeccC------------------------cCCC------
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNHG------------------------GRQL------   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~g------------------------g~~~------   99 (202)
                      ..+.++++++.+++|+=+-+ +.+| ..+..+.++|+|.|+++-..                        .|..      
T Consensus        47 g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~  126 (217)
T d2flia1          47 GADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPL  126 (217)
T ss_dssp             CHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGG
T ss_pred             CHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhH
Confidence            45789999998888887765 3444 46788889999999986210                        0110      


Q ss_pred             ---------------CCc----cchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 ---------------DYV----PASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 ---------------~~~----~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                     .+|    +...+-+.++++.+   ..+++|..+|||+ .+.+.++..+|||.+.+||+++.
T Consensus       127 l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~  201 (217)
T d2flia1         127 LDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK  201 (217)
T ss_dssp             TTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred             HhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhC
Confidence                           112    23444455554433   3468999999996 56788889999999999988663

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=0.00026  Score=55.38  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=71.6

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..++ .++|++- ++.|+.++..+.++|++.+.+.-.+.   .+   ....++.++.-+ ++++++.+||
T Consensus        92 SP~~~~~v~~~a~~-~~i~~iP-Gv~TpsEi~~A~~~G~~~vK~FPA~~---~g---G~~~lkal~~p~-p~~~~~ptGG  162 (212)
T d1vhca_          92 TPGLNPKIVKLCQD-LNFPITP-GVNNPMAIEIALEMGISAVKFFPAEA---SG---GVKMIKALLGPY-AQLQIMPTGG  162 (212)
T ss_dssp             CSSCCHHHHHHHHH-TTCCEEC-EECSHHHHHHHHHTTCCEEEETTTTT---TT---HHHHHHHHHTTT-TTCEEEEBSS
T ss_pred             CCCCCHHHHHHHHh-cCCCccC-CcCCHHHHHHHHHCCCCEEEEccccc---cc---hHHHHHHHhccc-cCCeEEecCC
Confidence            45555567776665 4889885 68999999999999999999954321   01   234455554434 4799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      |. .+++.+.+++|+.++++|+.+.
T Consensus       163 V~-~~N~~~yl~~g~v~~~~Gs~l~  186 (212)
T d1vhca_         163 IG-LHNIRDYLAIPNIVACGGSWFV  186 (212)
T ss_dssp             CC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred             CC-HHHHHHHHhCCCEEEEEChhhC
Confidence            95 5889999999999999999876

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=97.58  E-value=0.0001  Score=62.29  Aligned_cols=100  Identities=11%  Similarity=-0.032  Sum_probs=61.8

Q ss_pred             ccHHHHHHHHHhcC-CCEEEEecc----------C-H----HHH------HHHHHcCCcEEEeeccCcCCC---C-C--c
Q psy16780         51 INWSDVTWLKTITK-LPIVLKGIL----------T-A----EDA------KIGVEMGASAIMVSNHGGRQL---D-Y--V  102 (202)
Q Consensus        51 ~~~~~i~~i~~~~~-~Pv~vK~~~----------~-~----~~a------~~l~~aG~d~I~v~~~gg~~~---~-~--~  102 (202)
                      |..++|+.||+.++ -+++++...          . .    +.+      ..+...+++++.++.......   . .  .
T Consensus       211 f~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  290 (380)
T d1q45a_         211 FLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQG  290 (380)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC-------------
T ss_pred             hHHHHHHHHHHHccccCceEEEeecccccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccC
Confidence            46789999999873 334444320          1 1    111      222346788888875321110   0 0  1


Q ss_pred             cc--hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780        103 PA--SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW  153 (202)
Q Consensus       103 ~~--~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~  153 (202)
                      +.  .......+++.+  ++||+++||+ +++.+.++++.| ||+|++||+|+.
T Consensus       291 ~~~~~~~~~~~ik~~~--~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~lia  341 (380)
T d1q45a_         291 SDEEEAKLMKSLRMAY--NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIA  341 (380)
T ss_dssp             --CHHHHHHHHHHHHS--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             chhhhHHHHHHHhhcc--CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHH
Confidence            11  122344455555  7999999998 699999999998 999999999996

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=97.50  E-value=6.5e-05  Score=64.07  Aligned_cols=40  Identities=15%  Similarity=0.077  Sum_probs=34.7

Q ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780        112 IAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW  153 (202)
Q Consensus       112 i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~  153 (202)
                      +++.+  ++|||++|||++..++.+.+.. +||+|++||+++.
T Consensus       312 ik~~~--~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~lia  352 (399)
T d1oyaa_         312 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS  352 (399)
T ss_dssp             HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred             HHHHh--CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence            45556  8999999999999998888876 5999999999996

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=0.00035  Score=55.64  Aligned_cols=76  Identities=25%  Similarity=0.277  Sum_probs=58.5

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|+|.+.+..-.+. ........+.+.++.+.+  .+|+...||||+.+++.+.+.+||+-|.+++..+.
T Consensus        33 ~~~a~~~~~~g~dei~iiDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~  108 (251)
T d1ka9f_          33 VEAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR  108 (251)
T ss_dssp             HHHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEecccc-cccchhHHHHHHHHHhcc--CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence            36788899999999987653221 112234555667776655  79999999999999999999999999999997664

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00041  Score=54.22  Aligned_cols=95  Identities=18%  Similarity=0.248  Sum_probs=71.1

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++..++ .++|++- ++.|+.++..+.++|++.+.+.-...      ......+..++.-+ ++++++.+||
T Consensus        93 SP~~~~~v~~~a~~-~~i~~iP-Gv~TpsEi~~A~~~G~~~vKlFPA~~------~Gg~~~lkal~~p~-p~~~~~ptGG  163 (213)
T d1wbha1          93 SPGLTEPLLKAATE-GTIPLIP-GISTVSELMLGMDYGLKEFKFFPAEA------NGGVKALQAIAGPF-SQVRFCPTGG  163 (213)
T ss_dssp             ESSCCHHHHHHHHH-SSSCEEE-EESSHHHHHHHHHTTCCEEEETTTTT------TTHHHHHHHHHTTC-TTCEEEEBSS
T ss_pred             CCCCCHHHHHHHHh-cCCCccC-CcCCHHHHHHHHHCCCCEEEeccchh------cChHHHHHHhcCcc-cCCceeeeCC
Confidence            34455557776665 4789885 68999999999999999999954210      01234555554433 5799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      |. .+++.+.+.+|+.++++|+.+.
T Consensus       164 V~-~~n~~~yl~~g~v~~~~Gs~l~  187 (213)
T d1wbha1         164 IS-PANYRDYLALKSVLCIGGSWLV  187 (213)
T ss_dssp             CC-TTTHHHHHTSTTBSCEEEGGGS
T ss_pred             CC-HHHHHHHHhCCCEEEEEChhhC
Confidence            87 5799999999999999999765

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.34  E-value=0.00079  Score=52.99  Aligned_cols=75  Identities=27%  Similarity=0.270  Sum_probs=59.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.++...+.|+|.+.+..-.+..  +.......+..+.+.+  .+|+...|||++.+|+.+.+..||+-|.+++..+.
T Consensus        34 ~~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~  108 (239)
T d1vzwa1          34 LEAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE  108 (239)
T ss_dssp             HHHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeecccc--cccchHHHHHHHHhhc--CcceEeecccccchhhhhhhccccccchhhHHhhh
Confidence            467888899999999886421111  1234556777777776  79999999999999999999999999999997653

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.00036  Score=52.71  Aligned_cols=89  Identities=22%  Similarity=0.266  Sum_probs=64.4

Q ss_pred             HHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         54 SDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        54 ~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      +.++.+++..  ..++.| ++.+.+++..+.++|+|.|-++|..       |.....+.+..+...+++.+-+||||. .
T Consensus        66 ~~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn~~-------pe~~k~~~~~lk~~~~~i~lEaSGGI~-~  136 (170)
T d1o4ua1          66 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNLS-------PEEVKDISRRIKDINPNVIVEVSGGIT-E  136 (170)
T ss_dssp             HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESCC-------HHHHHHHHHHHHHHCTTSEEEEEECCC-T
T ss_pred             HHHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcCcC-------hhhHhHHHHHHHhhCCcEEEEEECCCC-H
Confidence            4677777654  355666 6788999999999999999998742       323333323334456789999999984 4


Q ss_pred             HHHHHHHHhCCCEEEEcHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~  151 (202)
                      +.+.+....|+|.+.+|++.
T Consensus       137 ~ni~~~a~~GVD~Is~g~lt  156 (170)
T d1o4ua1         137 ENVSLYDFETVDVISSSRLT  156 (170)
T ss_dssp             TTGGGGCCTTCCEEEEGGGT
T ss_pred             HHHHHHHHcCCCEEEcCccc
Confidence            66767767999999999754

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.0031  Score=49.18  Aligned_cols=90  Identities=19%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHH---HHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA---KAVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~---~~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=.+.+.+++-.+.++|+++|...  -||-.+.+......+.++.   +..+.+..|++ +.+|+..++.+++..
T Consensus       103 Gi~~n~Tavfs~~Qa~~Aa~aga~yispy--~gR~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~~~  179 (218)
T d1vpxa_         103 GIKTNVTLVFSPAQAILAAKAGATYVSPF--VGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAALM  179 (218)
T ss_dssp             TCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHHHH
T ss_pred             CCceeeEEecCHHHHHHHHhcCCCEEEee--ecchhhhcccchhhHHHHHHHHhhhcccceeee-eccCCHHHHHHHHHc
Confidence            67777766778888888899999988653  2332222223334444443   33344677777 669999999999999


Q ss_pred             CCCEEEEcHHHHHHhh
Q psy16780        141 GAKMVFVGRPALWGLA  156 (202)
Q Consensus       141 GAd~V~ig~~~l~~~~  156 (202)
                      |||.+-+.-.++..+.
T Consensus       180 G~d~iTip~~v~~~l~  195 (218)
T d1vpxa_         180 GVDIVTMPFAVLEKLF  195 (218)
T ss_dssp             TCSEEEECHHHHHHHT
T ss_pred             CCCEEEcCHHHHHHHH
Confidence            9999999999887653

>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.0027  Score=49.57  Aligned_cols=89  Identities=10%  Similarity=0.121  Sum_probs=64.5

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH---HhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK---AVGHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~---~~~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=.+.+..++..+.++|+++|...-  ||-.+.+....+.+.++.+   ..+.+..|++ +.+|+..++.++..+
T Consensus       103 Gi~vn~Tavfs~~Qa~~Aa~aga~yvspy~--gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~~~~v~~~~~~  179 (220)
T d1l6wa_         103 GIPTLGTAVYGAAQGLLSALAGAEYVAPYV--NRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKTPRQALDCLLA  179 (220)
T ss_dssp             TCCEEEEEECSHHHHHHHHHHTCSEEEEBH--HHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSSHHHHHHHHHT
T ss_pred             ccchhhhhcccHHHHHHhhhcCCcEEeeee--eehhhcccCChHHHHHHHHHHHhcCCCceEee-hhcCCHHHHHHHHHc
Confidence            677777677888889899999999887632  3322333334445544433   3334566666 779999999999999


Q ss_pred             CCCEEEEcHHHHHHh
Q psy16780        141 GAKMVFVGRPALWGL  155 (202)
Q Consensus       141 GAd~V~ig~~~l~~~  155 (202)
                      |||.+-+.-.++..+
T Consensus       180 G~d~iTip~~v~~~l  194 (220)
T d1l6wa_         180 GCESITLPLDVAQQM  194 (220)
T ss_dssp             TCSEEEECHHHHHHT
T ss_pred             CCCEEEcCHHHHHHH
Confidence            999999999998765

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.23  E-value=0.0045  Score=48.18  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=74.1

Q ss_pred             ccHHHHHHHHHhcCCCEEEEec-cC-HHHHHHHHHcCCcEEEeeccC-------------------------cCCC----
Q psy16780         51 INWSDVTWLKTITKLPIVLKGI-LT-AEDAKIGVEMGASAIMVSNHG-------------------------GRQL----   99 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~-~~-~~~a~~l~~aG~d~I~v~~~g-------------------------g~~~----   99 (202)
                      +..+.++++++.++.|+-+=+- .+ .+....+.++|++.|.++-..                         .|..    
T Consensus        46 ~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~  125 (220)
T d1h1ya_          46 IGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVF  125 (220)
T ss_dssp             BCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGH
T ss_pred             cCchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHH
Confidence            3567888888887777665432 23 344666777777777775210                         0100    


Q ss_pred             --------------------CCc----cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHh
Q psy16780        100 --------------------DYV----PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL  155 (202)
Q Consensus       100 --------------------~~~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~  155 (202)
                                          .+|    +...+-+.++++. ..+++|.++|||+.- .+.++..+|||.+.+||+++.  
T Consensus       126 ~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~-~~~~~I~VDGGIn~~-~i~~l~~aGad~~V~GS~if~--  201 (220)
T d1h1ya_         126 PLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKK-YPSLDIEVDGGLGPS-TIDVAASAGANCIVAGSSIFG--  201 (220)
T ss_dssp             HHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH-CTTSEEEEESSCSTT-THHHHHHHTCCEEEESHHHHT--
T ss_pred             HHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhc-CCCceEEEEecCCHH-HHHHHHHCCCCEEEECHHHHC--
Confidence                                012    2345556666554 457999999999774 788888999999999998653  


Q ss_pred             hhcChHHHHHHHHHHHHHHH
Q psy16780        156 AHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       156 ~~~G~~~v~~~i~~l~~~L~  175 (202)
                          .+...+.++.|++.++
T Consensus       202 ----~~d~~~~i~~lr~~~~  217 (220)
T d1h1ya_         202 ----AAEPGEVISALRKSVE  217 (220)
T ss_dssp             ----SSCHHHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHH
Confidence                2223455555555444

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=0.00075  Score=52.66  Aligned_cols=84  Identities=17%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             cccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         50 TINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      +...+.|+++++.. ++-|.++.+.+.++++.+.++|+++++--+          .+.+.+..+ ...  ++|.+-  |+
T Consensus        50 ~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a-~~~--~i~~iP--Gv  114 (212)
T d1vhca_          50 EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG----------LNPKIVKLC-QDL--NFPITP--GV  114 (212)
T ss_dssp             TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHH-HHT--TCCEEC--EE
T ss_pred             hhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECCC----------CCHHHHHHH-Hhc--CCCccC--Cc
Confidence            44578899998876 667777778999999999999999986411          123344443 333  677775  89


Q ss_pred             CCHHHHHHHHHhCCCEEEEc
Q psy16780        129 RYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig  148 (202)
                      .|+.++..|+.+||+.|-+-
T Consensus       115 ~TpsEi~~A~~~G~~~vK~F  134 (212)
T d1vhca_         115 NNPMAIEIALEMGISAVKFF  134 (212)
T ss_dssp             CSHHHHHHHHHTTCCEEEET
T ss_pred             CCHHHHHHHHHCCCCEEEEc
Confidence            99999999999999988653

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.15  E-value=0.00095  Score=53.49  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             CEEEEecc------CHHHH---H-HHHHcCCcEEEeeccCcCCCCCccchHHHHHHH-HHH------hCCCcEEEEecCC
Q psy16780         66 PIVLKGIL------TAEDA---K-IGVEMGASAIMVSNHGGRQLDYVPASIEALPEI-AKA------VGHKVDVYLDGGV  128 (202)
Q Consensus        66 Pv~vK~~~------~~~~a---~-~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i-~~~------~~~~ipiia~GGI  128 (202)
                      +..+|.++      +.+..   . .+.++|+|+|.-|.+-+.. ...+.+...+.++ ++.      .++++.|=++|||
T Consensus       135 ~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGadFVKTSTG~~~~-gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGI  213 (256)
T d2a4aa1         135 NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQI-NATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGI  213 (256)
T ss_dssp             TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSSC-CCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSC
T ss_pred             CCeeEeeehhhhcCcHHHHHHHHHHHHhcccHHHHhccCCCCC-CCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCC
Confidence            45578762      33332   2 3468999999886532110 0112233333332 221      1468999999999


Q ss_pred             CCHHHHHHHHHhCCCEE
Q psy16780        129 RYGTDVFKALALGAKMV  145 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V  145 (202)
                      ||.+++.+++.+|++.+
T Consensus       214 rt~~~a~~~i~~g~~~l  230 (256)
T d2a4aa1         214 SDLNTASHYILLARRFL  230 (256)
T ss_dssp             CSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999998854

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.001  Score=51.93  Aligned_cols=84  Identities=10%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             ccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         49 ETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .+...+.|+.++++. ++-|.++.+.+.++++.+.++|+++++--+          .+.+.+... ...  ++|++-  |
T Consensus        50 tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a-~~~--~i~~iP--G  114 (213)
T d1wbha1          50 TECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLLKAA-TEG--TIPLIP--G  114 (213)
T ss_dssp             STTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHHHHH-HHS--SSCEEE--E
T ss_pred             ChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC----------CCHHHHHHH-Hhc--CCCccC--C
Confidence            344678999999886 666677777999999999999999986422          123344433 333  677777  8


Q ss_pred             CCCHHHHHHHHHhCCCEEEE
Q psy16780        128 VRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~i  147 (202)
                      +.|+.++..++.+||+.|-+
T Consensus       115 v~TpsEi~~A~~~G~~~vKl  134 (213)
T d1wbha1         115 ISTVSELMLGMDYGLKEFKF  134 (213)
T ss_dssp             ESSHHHHHHHHHTTCCEEEE
T ss_pred             cCCHHHHHHHHHCCCCEEEe
Confidence            89999999999999998865

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.06  E-value=0.0084  Score=46.52  Aligned_cols=114  Identities=11%  Similarity=0.119  Sum_probs=72.2

Q ss_pred             HHHHHHHHhcCCCEEEEec--cCHHHHHHHHH-cCCcEEEeec-cCcC-CCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         54 SDVTWLKTITKLPIVLKGI--LTAEDAKIGVE-MGASAIMVSN-HGGR-QLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~-aG~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      +.++++++. +.-+.+-+.  .+.+.....++ .-+|.|.+-+ ..|. +....+..++-+.++++. ..++.|..+|||
T Consensus       102 ~~i~~i~~~-g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~-~~~~~I~VDGGI  179 (221)
T d1tqxa_         102 QLAKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKK-YKNLNIQVDGGL  179 (221)
T ss_dssp             HHHHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH-CTTCEEEEESSC
T ss_pred             HHHHHHHhc-CCeEEEeeccccccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHh-cCCcceEEEccc
Confidence            445666543 444444443  34566666664 4689887643 3332 122234456667777654 357899999999


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ  176 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~  176 (202)
                      .. +.+.++..+|||.+.+||+++.      .+...+.++.|++.++.
T Consensus       180 n~-~~i~~l~~aGad~iV~GS~if~------~~d~~~~i~~Lr~~i~k  220 (221)
T d1tqxa_         180 NI-ETTEISASHGANIIVAGTSIFN------AEDPKYVIDTMRVSVQK  220 (221)
T ss_dssp             CH-HHHHHHHHHTCCEEEESHHHHT------CSSHHHHHHHHHHHHHH
T ss_pred             CH-HhHHHHHHcCCCEEEEChHHHC------CCCHHHHHHHHHHHHhh
Confidence            65 6788899999999999998763      12334566677766653

>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.004  Score=48.13  Aligned_cols=89  Identities=25%  Similarity=0.228  Sum_probs=62.6

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHh
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALAL  140 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~  140 (202)
                      ++++-+=.+.+..++..+.++|+++|..-  -||-.+.+......+.++++.+   ..+..|++ ..+|+..++.+++.+
T Consensus       110 Gi~vn~T~vfs~~Qa~~Aa~aga~yispy--vgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~~~~~~~~~~  186 (211)
T d1wx0a1         110 GIKVNMTLIFSANQALLAARAGASYVSPF--LGRVDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAALL  186 (211)
T ss_dssp             TCCEEEEEECSHHHHHHHHHTTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHHHT
T ss_pred             CCceeEEEecCHHHHHHHHHcCCCEEEEe--eecchhccccchhHHHHHHHHHHhccccceeEe-eecCCHHHHHHHHHc
Confidence            56666666678888888889999988763  2332233333344445544332   34677777 569999999999999


Q ss_pred             CCCEEEEcHHHHHHh
Q psy16780        141 GAKMVFVGRPALWGL  155 (202)
Q Consensus       141 GAd~V~ig~~~l~~~  155 (202)
                      |||.+-+.-.++..+
T Consensus       187 G~d~vTi~~~v~~~l  201 (211)
T d1wx0a1         187 GADIATMPHAVFKQL  201 (211)
T ss_dssp             TCSEEEECHHHHHHH
T ss_pred             CCCEEEeCHHHHHHH
Confidence            999999998887653

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=96.94  E-value=0.00058  Score=56.58  Aligned_cols=77  Identities=23%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH-----------HHHHHHhC
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD-----------VFKALALG  141 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D-----------~~kal~~G  141 (202)
                      .+.|+...+.|||.+++-.-.+..  .....+..+.+.++++.+  .+||...||||+-+|           +.+.+.+|
T Consensus        51 ~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G  128 (323)
T d1jvna1          51 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG  128 (323)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc--ceeEEEecCcccHHHhhhccchhhHHHHHHHHcC
Confidence            477899999999999874321110  001123455666665544  799999999999765           57889999


Q ss_pred             CCEEEEcHHHHH
Q psy16780        142 AKMVFVGRPALW  153 (202)
Q Consensus       142 Ad~V~ig~~~l~  153 (202)
                      ||-|.++|..+.
T Consensus       129 adKVvI~T~ai~  140 (323)
T d1jvna1         129 ADKVSIGTDAVY  140 (323)
T ss_dssp             CSEEEECHHHHH
T ss_pred             CCeEEechHHhh
Confidence            999999998774

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=96.94  E-value=0.0011  Score=51.88  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=64.2

Q ss_pred             ccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         51 INWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        51 ~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      ...+.|+.++++. ++.|.++.+.+.++++.+.++|+++++--+          .+.+.+... +..  ++|.+-  |+.
T Consensus        54 ~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~----------~~~~v~~~a-~~~--~i~~iP--Gv~  118 (216)
T d1mxsa_          54 HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDILEAG-VDS--EIPLLP--GIS  118 (216)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHHHHHH-HHC--SSCEEC--EEC
T ss_pred             hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC----------CcHHHHHHH-Hhc--CCCccC--CcC
Confidence            3578999999886 677777778999999999999999986421          123333433 333  677776  899


Q ss_pred             CHHHHHHHHHhCCCEEEEcH
Q psy16780        130 YGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~  149 (202)
                      |+.++.+++.+||+.|-+-=
T Consensus       119 TpsEi~~A~~~G~~~vKlFP  138 (216)
T d1mxsa_         119 TPSEIMMGYALGYRRFKLFP  138 (216)
T ss_dssp             SHHHHHHHHTTTCCEEEETT
T ss_pred             CHHHHHHHHHCCCCEEEecc
Confidence            99999999999999987654

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.82  E-value=0.0018  Score=49.90  Aligned_cols=98  Identities=20%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             HHHHHHHHhcCCCEE--EEecc---C-HHHHHHHHHcCCcEEEeeccCcCC---------------------CC------
Q psy16780         54 SDVTWLKTITKLPIV--LKGIL---T-AEDAKIGVEMGASAIMVSNHGGRQ---------------------LD------  100 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~--vK~~~---~-~~~a~~l~~aG~d~I~v~~~gg~~---------------------~~------  100 (202)
                      +.++++++..+.||+  .|..-   + ...++.+.++|+|.++|++.+|..                     ++      
T Consensus        44 ~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~~  123 (212)
T d1km4a_          44 DIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEM  123 (212)
T ss_dssp             HHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGGT
T ss_pred             HHHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhcchhhhh
Confidence            468888888888988  56542   2 244677789999999998765521                     00      


Q ss_pred             ----------------------CccchHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        101 ----------------------YVPASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       101 ----------------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                            ++....+.+..+++..+ +-.++.++||+. +.+..+++ .|||.+.+||+++.
T Consensus       124 ~~~~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~  197 (212)
T d1km4a_         124 FIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYL  197 (212)
T ss_dssp             THHHHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHT
T ss_pred             hhhhHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC-CceeEEcCccccCCCCHHHHH-hhCCEEEECchhcc
Confidence                                  00112233444555443 344667899974 22333333 58999999999985

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.80  E-value=0.0033  Score=50.59  Aligned_cols=93  Identities=22%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      ..++.+.+.|++++.+.|+.|....-.... .+.+..+.+.+++++|+++.-|=.+.+++.+..    .+|||++++..|
T Consensus        32 ~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P  111 (296)
T d1xxxa1          32 RLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP  111 (296)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEec
Confidence            446788999999999987655332211222 223455566677889999866666666665443    479999999998


Q ss_pred             HHHHhhhcChHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      +++.   .+.+.+.++++.+.
T Consensus       112 ~~~~---~~~~~l~~~~~~v~  129 (296)
T d1xxxa1         112 YYSK---PPQRGLQAHFTAVA  129 (296)
T ss_dssp             CSSC---CCHHHHHHHHHHHH
T ss_pred             cCCC---CCHHHHHHHHHHHH
Confidence            7752   23454555544443

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=96.76  E-value=0.023  Score=44.34  Aligned_cols=101  Identities=21%  Similarity=0.261  Sum_probs=69.0

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeeccC--c------------------------CCC----
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNHG--G------------------------RQL----   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~g--g------------------------~~~----   99 (202)
                      ..+.++++++.+++|+=+=+ +.++ ..+..+.++|+|.|+++-..  .                        |..    
T Consensus        56 ~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~  135 (230)
T d1rpxa_          56 GPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE  135 (230)
T ss_dssp             CHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGT
T ss_pred             ChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Confidence            45789999988888876654 3444 55788899999999886320  0                        100    


Q ss_pred             -----------------CCc----cchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 -----------------DYV----PASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 -----------------~~~----~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                       .+|    +...+-+.++++..   ..++.|..+|||.. +.+.++..+|||.+.+||+++.
T Consensus       136 ~~l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~GS~if~  212 (230)
T d1rpxa_         136 YVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFG  212 (230)
T ss_dssp             TTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHHT
T ss_pred             HHHhhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHHC
Confidence                             012    22344455543332   34689999999976 4788888999999999998763

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=96.75  E-value=0.0019  Score=54.55  Aligned_cols=69  Identities=17%  Similarity=0.269  Sum_probs=53.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .+-+..+.++|+|.++++...|..    ..-.+.+..+++.. +++|||+ |++.|.+.+...+..|||+|-+|-
T Consensus       153 ~~ra~~L~~aG~D~ivID~AhG~s----~~~~~~i~~ik~~~-~~v~vIa-GNV~T~e~a~~L~~~GaD~VkVGi  221 (388)
T d1eepa_         153 IERVEELVKAHVDILVIDSAHGHS----TRIIELIKKIKTKY-PNLDLIA-GNIVTKEAALDLISVGADCLKVGI  221 (388)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSS----HHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHTTTCSEEEECS
T ss_pred             HHHHHHHHhhccceeeeeccccch----HHHHHHHHHHHHHC-CCCceee-ccccCHHHHHHHHhcCCCeeeecc
Confidence            577888999999999998754432    12344566666554 4799877 889999999999999999997764

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0024  Score=51.25  Aligned_cols=93  Identities=12%  Similarity=0.112  Sum_probs=63.2

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH----hCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA----LGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~----~GAd~V~ig~~  150 (202)
                      ..++.+.+.|++++.+.|+.|....-.... .+.+..+++..++++|+++..+=.+..++.+...    +|||++++..|
T Consensus        26 ~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP  105 (292)
T d2a6na1          26 KLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP  105 (292)
T ss_dssp             HHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCC
Confidence            446778899999999987655322111112 2244556677778899999888888888877664    69999999999


Q ss_pred             HHHHhhhcChHHHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDILI  171 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~l~  171 (202)
                      +++.   -..+++.++++.+.
T Consensus       106 ~~~~---~~~~~i~~~f~~v~  123 (292)
T d2a6na1         106 YYNR---PSQEGLYQHFKAIA  123 (292)
T ss_dssp             CSSC---CCHHHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHHHh
Confidence            8752   23455555555544

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=96.72  E-value=0.003  Score=50.55  Aligned_cols=91  Identities=15%  Similarity=0.232  Sum_probs=57.9

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~  150 (202)
                      ..++.+.+.|++++.+.|+.|....-.... ...+..+.+..++++|||+.-|=.+..++++    +..+|||++++..|
T Consensus        28 ~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP  107 (292)
T d1xkya1          28 KLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP  107 (292)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence            446778899999999977655322111112 2234555666777899998666666666554    33579999999988


Q ss_pred             HHHHhhhcChHHHHHHHHH
Q psy16780        151 ALWGLAHSGKSGVRKVLDI  169 (202)
Q Consensus       151 ~l~~~~~~G~~~v~~~i~~  169 (202)
                      +++.   ...+.+.++++.
T Consensus       108 ~~~~---~s~~~i~~~~~~  123 (292)
T d1xkya1         108 YYNK---PSQEGMYQHFKA  123 (292)
T ss_dssp             CSSC---CCHHHHHHHHHH
T ss_pred             CCCC---CCHHHHHHHHHH
Confidence            7642   233444444443

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=96.63  E-value=0.0024  Score=50.02  Aligned_cols=45  Identities=16%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        107 EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       107 ~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +.+..+++. ..++|++.-+||++++++.++. .|||+|.+||++..
T Consensus       170 ~~~~~v~~~-~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~  214 (229)
T d1viza_         170 EAVKKTKAV-LETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE  214 (229)
T ss_dssp             HHHHHHHHT-CSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred             hhHHHHHhh-ccCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHh
Confidence            444444444 3579999999999999997754 79999999999875

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.60  E-value=0.0039  Score=52.23  Aligned_cols=68  Identities=22%  Similarity=0.292  Sum_probs=52.1

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.+..+.++|+|.|+++...|..    ....+.+.++++.. +++|||+ |.|.|++.+.+++.+|||+|-+|
T Consensus       109 ~er~~~l~~agvd~ivID~A~G~s----~~~~~~i~~ik~~~-~~~~iIa-GNV~T~e~a~~L~~aGaD~VkVG  176 (365)
T d1zfja1         109 FERAEALFEAGADAIVIDTAHGHS----AGVLRKIAEIRAHF-PNRTLIA-GNIATAEGARALYDAGVDVVKVG  176 (365)
T ss_dssp             HHHHHHHHHHTCSEEEECCSCTTC----HHHHHHHHHHHHHC-SSSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEECCcccc----cchhHHHHHHHhhC-CCcceee-cccccHHHHHHHHhcCCceEEee
Confidence            477888999999999997654421    12234566666654 4788885 99999999999999999998877

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0034  Score=50.24  Aligned_cols=78  Identities=21%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|++++.+.|+.|....-.... ...+..+.+...+++|||+.-|=.+..++.+..    .+|||++++.-|
T Consensus        26 ~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP  105 (295)
T d1o5ka_          26 RLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP  105 (295)
T ss_dssp             HHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            456778899999999987655321111111 223444556667789999977767776765443    379999999988


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      ++.
T Consensus       106 ~y~  108 (295)
T d1o5ka_         106 YYN  108 (295)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.0044  Score=47.75  Aligned_cols=85  Identities=20%  Similarity=0.081  Sum_probs=61.1

Q ss_pred             cccHHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         50 TINWSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        50 ~~~~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      ....+.|+++++..  ++-|.+..+.+.++++.+.++|+++++-   .+.       +.+.+....+ .  .+|++-  |
T Consensus        45 p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivs---P~~-------~~~v~~~~~~-~--~i~~iP--G  109 (202)
T d1wa3a1          45 PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVS---PHL-------DEEISQFCKE-K--GVFYMP--G  109 (202)
T ss_dssp             TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEEC---SSC-------CHHHHHHHHH-H--TCEEEC--E
T ss_pred             ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeC---CCC-------cHHHHHHHHh-c--CCceeC--C
Confidence            33567788877543  4556666779999999999999999962   121       2344444333 2  677776  8


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +.|+.++.+++.+|++.+-+--
T Consensus       110 v~TpsEi~~A~~~G~~~lK~fP  131 (202)
T d1wa3a1         110 VMTPTELVKAMKLGHTILKLFP  131 (202)
T ss_dssp             ECSHHHHHHHHHTTCCEEEETT
T ss_pred             cCcHHHHHHHHHCCCCEEEecc
Confidence            9999999999999999997643

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0078  Score=46.77  Aligned_cols=43  Identities=21%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcCCCEE--EEeccCH----HHHHHHHHcCCcEEEeeccCc
Q psy16780         53 WSDVTWLKTITKLPIV--LKGILTA----EDAKIGVEMGASAIMVSNHGG   96 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~--vK~~~~~----~~a~~l~~aG~d~I~v~~~gg   96 (202)
                      .+.|+++++ .+.+|+  .|..-.+    ..++.+.+.|+|.+++++.+|
T Consensus        44 ~~~i~~l~~-~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g   92 (231)
T d1eixa_          44 PQFVRELQQ-RGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGG   92 (231)
T ss_dssp             HHHHHHHHH-TTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGC
T ss_pred             HHHHHHHHh-cCchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEeccCc
Confidence            457888876 567776  4543222    456788899999999987654

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=96.42  E-value=0.0044  Score=48.24  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=68.6

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      .|.+..++++.-++ .++|++- ++.|+.++..+.++|++.+.+.-.+-      ......++.++.-+ ++++++.+||
T Consensus        95 sP~~~~~v~~~a~~-~~i~~iP-Gv~TpsEi~~A~~~G~~~vKlFPA~~------~~g~~~ikal~~p~-p~~~fiptGG  165 (216)
T d1mxsa_          95 TPGITEDILEAGVD-SEIPLLP-GISTPSEIMMGYALGYRRFKLFPAEI------SGGVAAIKAFGGPF-GDIRFCPTGG  165 (216)
T ss_dssp             CSSCCHHHHHHHHH-CSSCEEC-EECSHHHHHHHHTTTCCEEEETTHHH------HTHHHHHHHHHTTT-TTCEEEEBSS
T ss_pred             CCCCcHHHHHHHHh-cCCCccC-CcCCHHHHHHHHHCCCCEEEeccccc------cccHHHHHHHhccc-ccCceeccCC
Confidence            45555667776654 5888875 68999999999999999999953210      01233455554434 4799999999


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      |.. +++.+.+++|+-+++.|+.++
T Consensus       166 V~~-~n~~~yl~~~~v~avggs~l~  189 (216)
T d1mxsa_         166 VNP-ANVRNYMALPNVMCVGTTWML  189 (216)
T ss_dssp             CCT-TTHHHHHHSTTBCCEEECTTS
T ss_pred             CCH-HHHHHHHhcCCeEEEEccccC
Confidence            974 799999999877777777555

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.0063  Score=50.20  Aligned_cols=94  Identities=22%  Similarity=0.185  Sum_probs=61.7

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEec---cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~~---~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      +|+...+.++++++. +.++.+-..   .+.+.++.+.++|+|.++++...|..    ....+.+..+++.. +++|||+
T Consensus        71 ~~e~~~~~i~~vk~~-~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~----~~~~~~ik~ik~~~-~~~~via  144 (330)
T d1vrda1          71 TPDEQARQVSIVKKT-RLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHS----RRVIETLEMIKADY-PDLPVVA  144 (330)
T ss_dssp             CHHHHHHHHHHHHTC-CBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSS----HHHHHHHHHHHHHC-TTSCEEE
T ss_pred             chhhhHHHHHHHhhh-ccEEEEEEecCHHHHHHHHHHHHCCCCEEEEecCCCCc----hhHHHHHHHHHHhC-CCCCEEe
Confidence            344444455666543 334333222   24567888999999999987654431    12334566665554 4688777


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                       |.+.+.+.+.+++.+|||+|-+|
T Consensus       145 -GnV~t~~~a~~l~~~GaD~v~VG  167 (330)
T d1vrda1         145 -GNVATPEGTEALIKAGADAVKVG  167 (330)
T ss_dssp             -EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             -echhHHHHHHHHHHcCCCEEeec
Confidence             88999999999999999998775

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.31  E-value=0.004  Score=48.57  Aligned_cols=47  Identities=21%  Similarity=0.307  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      ..+.+..+++.+ .++|++.-+||+|++++.++. .+||+|.+||+|..
T Consensus       174 ~~~~~~~~~k~~-~~~Pv~VGFGI~s~e~a~~~~-~~ADgvIVGSaive  220 (231)
T d2f6ua1         174 NPELVAEVKKVL-DKARLFYGGGIDSREKAREML-RYADTIIVGNVIYE  220 (231)
T ss_dssp             CHHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHH-HHSSEEEECHHHHH
T ss_pred             hhhHHHHHHHhc-CCCCEEEEeCcCCHHHHHHHH-hcCCEEEEChHHhc
Confidence            344555555554 479999999999999998765 48999999999975

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=96.27  E-value=0.024  Score=43.83  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeeccC--c------------------------CCC----
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNHG--G------------------------RQL----   99 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~g--g------------------------~~~----   99 (202)
                      ..+.++++++.+++|+=+=+ +.+| ..+..+.++|++.++++-..  .                        |..    
T Consensus        48 ~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~  127 (221)
T d1tqja_          48 GPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLE  127 (221)
T ss_dssp             CHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGT
T ss_pred             CcHhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHH
Confidence            45688999888888765543 2333 45677888888888886421  0                        100    


Q ss_pred             -----------------CCc----cchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        100 -----------------DYV----PASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       100 -----------------~~~----~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                                       .+|    +...+-+.++++..   ..++.|..+|||.. +.+.++..+|||.+.+||+++.
T Consensus       128 ~~l~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~if~  204 (221)
T d1tqja_         128 YVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN  204 (221)
T ss_dssp             TTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred             HHHhhhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHhC
Confidence                             012    23344455544332   34689999999976 4677888899999999998663

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=96.24  E-value=0.026  Score=51.16  Aligned_cols=145  Identities=8%  Similarity=0.025  Sum_probs=96.7

Q ss_pred             ccCccccHHHHHHHHHhcCCC-----EEEEecc---C--------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHH
Q psy16780         46 QLDETINWSDVTWLKTITKLP-----IVLKGIL---T--------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEAL  109 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~P-----v~vK~~~---~--------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l  109 (202)
                      .-.|-++.+.+++|++..+.+     +..+...   +        .+.|..+++.|+..|++|-++-..-....|.+-++
T Consensus       123 l~sPILs~~e~~~i~~~~~~~~~~id~~f~~~~g~~~L~~AL~~l~~eA~~AV~~G~~ilILSDr~~~~~~~~IP~LLAv  202 (771)
T d1ea0a2         123 LESPVLTTAEFRAMRDYMGDTAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIPAILAT  202 (771)
T ss_dssp             ESCSBCCHHHHHHHHHHHGGGEEEEECEEESTTCTTHHHHHHHHHHHHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHH
T ss_pred             eCCCccCHHHHHHHHccCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHHHHHhCCCcEEEEeccccccchhhhHHHHHH
Confidence            445666777778887654333     2222111   1        24467789999999999875321111123444455


Q ss_pred             HHHHHHh-----CCCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcHHHHHH-----hhhcC-------hHHHHHHHHHHH
Q psy16780        110 PEIAKAV-----GHKVDVYL-DGGVRYGTDVFKALALGAKMVFVGRPALWG-----LAHSG-------KSGVRKVLDILI  171 (202)
Q Consensus       110 ~~i~~~~-----~~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~~~l~~-----~~~~G-------~~~v~~~i~~l~  171 (202)
                      ..+.+.+     +.++-||. +|-+|+.-++.-.+-.||++|-   |++.-     +...+       .+.+.+|.+.+.
T Consensus       203 ~aVHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~AV~---PYLa~e~i~~~~~~~~~~~~~~~~a~~ny~kAi~  279 (771)
T d1ea0a2         203 GAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVN---AYLAQEAIAERHRRGLFGSMPLEKGMANYKKAID  279 (771)
T ss_dssp             HHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEE---CHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccceeEEeehhhhhhhhhhheeeccccccC---hHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHH
Confidence            5555443     34677777 7889999999999999999997   44421     11111       356789999999


Q ss_pred             HHHHHHHHHhCCCCHHhhhhcc
Q psy16780        172 NEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       172 ~~L~~~m~~~G~~~i~el~~~~  193 (202)
                      ++|..+|..+|.++++.-++..
T Consensus       280 kGLlKIMSKMGIStl~SY~Gaq  301 (771)
T d1ea0a2         280 DGLLKIMSKMGISVISSYRGGG  301 (771)
T ss_dssp             HHHHHHHHTTTCCCHHHHTTSC
T ss_pred             HHHHHHHHHhchhhhhHHHHhh
Confidence            9999999999999999887763

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.07  E-value=0.006  Score=51.24  Aligned_cols=98  Identities=13%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEEE-----------eccC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVLK-----------GILT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE  111 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~vK-----------~~~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~  111 (202)
                      ..+|+...+.++++++....|...+           ....   .+.+..+.++|+|.+++....|..    ....+.+..
T Consensus        78 ~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~----~~~~~~i~~  153 (378)
T d1jr1a1          78 NCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNS----IFQINMIKY  153 (378)
T ss_dssp             SSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCS----HHHHHHHHH
T ss_pred             CCCHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCHHHHHHHHHHHhhccceEeeeccCccc----hhhHHHHHH
Confidence            3455555566777776655554332           1122   345677889999999997754421    112334555


Q ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       112 i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      +++.. +++|||+ |.+.|.+.+.+++.+|||+|-+|-
T Consensus       154 ik~~~-~~~~iIa-GnVaT~e~a~~L~~aGAD~VkVGi  189 (378)
T d1jr1a1         154 MKEKY-PNLQVIG-GNVVTAAQAKNLIDAGVDALRVGM  189 (378)
T ss_dssp             HHHHS-TTCEEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHC-CCCceee-cccccHHHHHHHHHhCCCEEeecc
Confidence            55543 4788875 899999999999999999997764

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.0041  Score=48.79  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      .+.|+...+.|+|.+.+..-.+. ..+.+.....+..+++ .  .+|+...|||++.+|+.+.+..||+-|.+++.++.
T Consensus        33 ~~~a~~~~~~g~~~l~ivDLda~-~~~~~~~~~~~~~~~~-~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~  107 (241)
T d1qo2a_          33 VELVEKLIEEGFTLIHVVDLSNA-IENSGENLPVLEKLSE-F--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE  107 (241)
T ss_dssp             HHHHHHHHHTTCCCEEEEEHHHH-HHCCCTTHHHHHHGGG-G--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEecccc-cccCCcchhheehhcc-c--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence            37789999999999987542110 0011222333333332 3  57999999999999999999999999999997664

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=96.02  E-value=0.098  Score=40.88  Aligned_cols=91  Identities=27%  Similarity=0.392  Sum_probs=59.4

Q ss_pred             cHHHHHHHHHh---cCCCEEEEec---------cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780         52 NWSDVTWLKTI---TKLPIVLKGI---------LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA  115 (202)
Q Consensus        52 ~~~~i~~i~~~---~~~Pv~vK~~---------~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~  115 (202)
                      ..+.+.++.++   +++|+++=..         .+++.    ++.+.+.|+|.+.+--.         .+.+...++...
T Consensus       121 ~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~p---------~~~~~~~~~v~~  191 (251)
T d1ojxa_         121 MFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYT---------GDPKTFSWAVKV  191 (251)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECCC---------SSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecCC---------CcHHHHHHHHHh
Confidence            45556666554   4899887533         23333    57788999999998321         233444444333


Q ss_pred             hCCCcEEEEecCCC--CHHHHHH----HHHhCCCEEEEcHHHH
Q psy16780        116 VGHKVDVYLDGGVR--YGTDVFK----ALALGAKMVFVGRPAL  152 (202)
Q Consensus       116 ~~~~ipiia~GGI~--~~~D~~k----al~~GAd~V~ig~~~l  152 (202)
                      . ..+||+..||-.  +.+++++    ++..||.++.+||.+.
T Consensus       192 a-~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~  233 (251)
T d1ojxa_         192 A-GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVW  233 (251)
T ss_dssp             T-TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred             c-CCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhh
Confidence            2 368888888764  5666654    4557999999999886

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.016  Score=46.23  Aligned_cols=78  Identities=13%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      +.++.+.+.|+++|.+.|+.|....-.... .+.+..+++.+++++|+|+.-+=.+..++.+..    .+|||++++..|
T Consensus        27 ~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p  106 (295)
T d1hl2a_          27 RLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP  106 (295)
T ss_dssp             HHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeec
Confidence            446778899999999987655322111112 223455566777889999855555566555433    379999999988


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       107 ~~~  109 (295)
T d1hl2a_         107 FYY  109 (295)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            764

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=95.88  E-value=0.015  Score=48.31  Aligned_cols=69  Identities=23%  Similarity=0.245  Sum_probs=52.5

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      .+.++.+.++|+|.+++..+.|..    ....+.+..+++...+++|||+ |.|.|++.+..++.+|||+|-+|
T Consensus       112 ~~~~~~L~~ag~d~i~IDvAhG~~----~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~aGaD~vkVG  180 (362)
T d1pvna1         112 RERVPALVEAGADVLCIDSSDGFS----EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLADAGADFIKIG  180 (362)
T ss_dssp             HHHHHHHHHHTCSEEEECCSCCCB----HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHhhcCceEEeechhccch----hHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHHhCCcEEEec
Confidence            466888999999999998765532    1123455666555545687776 89999999999999999999887

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=95.88  E-value=0.046  Score=49.71  Aligned_cols=144  Identities=13%  Similarity=0.129  Sum_probs=95.9

Q ss_pred             ccCccccHHHHHHHHHhcCCCEEE-Eec------cCH--------HHHHHHHHcCCcEEEeeccC-cCCCCCc---cchH
Q psy16780         46 QLDETINWSDVTWLKTITKLPIVL-KGI------LTA--------EDAKIGVEMGASAIMVSNHG-GRQLDYV---PASI  106 (202)
Q Consensus        46 ~~d~~~~~~~i~~i~~~~~~Pv~v-K~~------~~~--------~~a~~l~~aG~d~I~v~~~g-g~~~~~~---~~~~  106 (202)
                      ...|-++.+.+.+|+.. +.+... ...      .+.        +.|..+++.|+..+++|-++ +...+..   .|.+
T Consensus       111 l~sPiLs~~el~~i~~~-~~~~~~i~~~f~~~g~~~L~~aL~~l~~ea~~AV~~G~~ilILSDR~~~~~i~~~~~~IP~l  189 (809)
T d1ofda2         111 LRSPLVNEVELQAIKTG-QLQVAEVSTLYDLDGVNSLEDALTNLVKTAIATVQAGAEILVLTDRPNGAILTENQSFIPPL  189 (809)
T ss_dssp             ESCSBCCHHHHHHHHHS-SSCEEEEECEEECSSSCCHHHHHHHHHHHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHH
T ss_pred             ECCCccCHHHHHHHHcC-CCceEEEeEEecCCchHHHHHHHHHHHHHHHHHHHCCCcEEEEeccccccccCCCccchhHH
Confidence            44566667777788653 333221 111      112        44677889999999999864 2212221   2444


Q ss_pred             HHHHHHHHH-----hCCCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcHHHHHH-----h---------hhcC-------
Q psy16780        107 EALPEIAKA-----VGHKVDVYL-DGGVRYGTDVFKALALGAKMVFVGRPALWG-----L---------AHSG-------  159 (202)
Q Consensus       107 ~~l~~i~~~-----~~~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~~~l~~-----~---------~~~G-------  159 (202)
                      -++..+.++     ++.++-||+ +|-+|+.-|+.-.+-.||++|-   |++.-     +         ...|       
T Consensus       190 LAv~AVH~~Lir~gLR~~~sLVveSGe~revHh~A~LiGyGA~AVn---PYLA~eti~~~~~~~~~~~~~~~~~~~~~~~  266 (809)
T d1ofda2         190 LAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAIC---PYLALESVRQWWLDEKTQKLMENGRLDRIDL  266 (809)
T ss_dssp             HHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEEE---CHHHHHHHHHHHSCHHHHHHHTTSSCCCCCH
T ss_pred             HHHHHHHHHHHHcCCCceeeeeeehHHHHHHHHhHHHHhccHHHHh---HHHHHHHHHHHhhhhhhhhhhhccCcccCCH
Confidence            445554443     344677777 8889999999999999999997   44421     0         0111       


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780        160 KSGVRKVLDILINEFDQALALSGCTSVGEIQREM  193 (202)
Q Consensus       160 ~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~  193 (202)
                      .+.+.++.+.+.++|...|..+|.++++.-++..
T Consensus       267 ~~a~~Ny~kAi~kGLLKIMSKMGISTl~SYrGaq  300 (809)
T d1ofda2         267 PTALKNYRQSVEAGLFKILSKMGISLLASYHGAQ  300 (809)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence            3568899999999999999999999999887653

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.70  E-value=0.025  Score=45.01  Aligned_cols=77  Identities=9%  Similarity=0.094  Sum_probs=49.2

Q ss_pred             HHHHHHHc-CCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780         77 DAKIGVEM-GASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP  150 (202)
Q Consensus        77 ~a~~l~~a-G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~  150 (202)
                      .++.+++. |++++.+.|+.|....-.... .+.+..+++..++++||++.=+=.+..|+.+..    .+|||++++..|
T Consensus        29 ~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP  108 (293)
T d1f74a_          29 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP  108 (293)
T ss_dssp             HHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCC
T ss_pred             HHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCc
Confidence            35666665 999999977654321111111 223444566677789999855556666666433    379999999998


Q ss_pred             HHH
Q psy16780        151 ALW  153 (202)
Q Consensus       151 ~l~  153 (202)
                      +++
T Consensus       109 ~~~  111 (293)
T d1f74a_         109 FYY  111 (293)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            774

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=95.08  E-value=0.087  Score=41.56  Aligned_cols=72  Identities=22%  Similarity=0.090  Sum_probs=57.2

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .+.|+...+.||++|.|-.-.  .+.  ..+.+.+..+++.+  ++||+.---|.++.++.++..+|||+|.+-.+++
T Consensus        68 ~~~A~~y~~~GA~aiSVLTe~--~~F--~Gs~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall  139 (254)
T d1vc4a_          68 VEAALAYARGGARAVSVLTEP--HRF--GGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL  139 (254)
T ss_dssp             HHHHHHHHHTTCSEEEEECCC--SSS--CCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred             HHHHHHHHhcCCceEEEEcCc--ccc--cccHHHHHHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHHH
Confidence            467888999999999985421  111  12456677777777  8999999999999999999999999999887654

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.01  E-value=0.014  Score=46.17  Aligned_cols=45  Identities=13%  Similarity=0.149  Sum_probs=39.0

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ++...+.++++|+.++.||.|+. +.++++++.+.+.|+|+++|+.
T Consensus       176 ~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS  221 (248)
T d1geqa_         176 PKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGS  221 (248)
T ss_dssp             CHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred             hhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECH
Confidence            34456799999999999999985 5799999999999999999954

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.96  E-value=0.019  Score=45.81  Aligned_cols=45  Identities=18%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             ccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         49 ETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        49 ~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      +....+.++++|+.+++||.|+. +.++++++.+.+.|+|+++|+.
T Consensus       190 ~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS  235 (267)
T d1qopa_         190 ALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS  235 (267)
T ss_dssp             --CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             chhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECH
Confidence            34467899999999999999995 5889999999999999999965

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.84  E-value=0.017  Score=46.01  Aligned_cols=43  Identities=21%  Similarity=0.230  Sum_probs=38.2

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH   94 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~   94 (202)
                      ..+.++.+|+.+++||.++. +.++++++.+.+.|+|+++|+.+
T Consensus       188 ~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSa  231 (261)
T d1rd5a_         188 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSA  231 (261)
T ss_dssp             HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             HHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHH
Confidence            46799999999999999995 57999999999999999999653

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.41  E-value=0.15  Score=40.63  Aligned_cols=97  Identities=18%  Similarity=0.141  Sum_probs=55.9

Q ss_pred             HHHHHHHHHh---cCCCEEEEec---------cC-H----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780         53 WSDVTWLKTI---TKLPIVLKGI---------LT-A----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA  115 (202)
Q Consensus        53 ~~~i~~i~~~---~~~Pv~vK~~---------~~-~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~  115 (202)
                      .+.++++.+.   .++|+++=..         .+ +    +.++.+.+.|+|.+.+--.+... ...........++...
T Consensus       139 ~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~~-~~~~~~~~~~~~~~~~  217 (291)
T d1to3a_         139 LNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGK-GARSDLLTASQRLNGH  217 (291)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGC-SCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCch-hhhHHHHHHHHHHhhc
Confidence            4456666543   5899887543         11 2    33577789999998874221000 0001112223333333


Q ss_pred             hCCCcE-EEEecCCCCHHHHHHH----HHhCCCEEEEcHHHHH
Q psy16780        116 VGHKVD-VYLDGGVRYGTDVFKA----LALGAKMVFVGRPALW  153 (202)
Q Consensus       116 ~~~~ip-iia~GGI~~~~D~~ka----l~~GAd~V~ig~~~l~  153 (202)
                      .  .+| |+.+||. +.+++.+.    +..||.++.+||.+..
T Consensus       218 ~--~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~  257 (291)
T d1to3a_         218 I--NMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWS  257 (291)
T ss_dssp             C--CSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred             C--CCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhh
Confidence            3  688 6667886 44555554    4479999999998764

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.27  E-value=0.031  Score=46.50  Aligned_cols=66  Identities=21%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG  148 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig  148 (202)
                      ..+.+..+.++|+|.|+++...|..    ....+.++++++.+  ++|+|+ |++.|++-+..  ..|||+|-+|
T Consensus       117 ~~~r~~~l~~aGvd~ivID~A~Gh~----~~~i~~lK~ir~~~--~~~vIa-GNVaT~e~~~~--l~gaD~VkVG  182 (368)
T d2cu0a1         117 DIKRAIELDKAGVDVIVVDTAHAHN----LKAIKSMKEMRQKV--DADFIV-GNIANPKAVDD--LTFADAVKVG  182 (368)
T ss_dssp             CHHHHHHHHHTTCSEEEEECSCCCC----HHHHHHHHHHHHTC--CSEEEE-EEECCHHHHTT--CTTSSEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEecCcccch----hhhhhhhhhhhhhc--ccceee-ccccCHHHHHh--hhcCcceeec
Confidence            4577888999999999998765432    12344567776665  689887 99999987643  2599998887

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.19  E-value=0.32  Score=36.30  Aligned_cols=94  Identities=14%  Similarity=0.067  Sum_probs=64.8

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-----------cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-----------LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV  120 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-----------~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i  120 (202)
                      ..+.++++|+.++.|+....-           ...+....+..+|+|.+.+...-+...+ ....++.+..+....  ..
T Consensus        54 ~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~  130 (230)
T d1yxya1          54 SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKY--PN  130 (230)
T ss_dssp             SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHC--TT
T ss_pred             ChhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecccccccc-hhhHHHHHHHHHhcC--CC
Confidence            357888999999999875431           2467888999999999988764322111 122344555554443  23


Q ss_pred             EEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780        121 DVYLDGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       121 piia~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      . +..+++.|.+++..+.++|||.+.+..
T Consensus       131 ~-~v~~~v~t~~~a~~a~~~Gad~i~~~~  158 (230)
T d1yxya1         131 Q-LLMADISTFDEGLVAHQAGIDFVGTTL  158 (230)
T ss_dssp             C-EEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred             c-eEecCCCCHHHHHHHHhcCCCEEEeec
Confidence            3 334479999999999999999998765

>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

Probab=94.03  E-value=0.099  Score=39.61  Aligned_cols=94  Identities=16%  Similarity=0.022  Sum_probs=57.3

Q ss_pred             HHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-----cCCCCCccc-----hHHHHHHHHHHh--CCC
Q psy16780         54 SDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-----GRQLDYVPA-----SIEALPEIAKAV--GHK  119 (202)
Q Consensus        54 ~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-----g~~~~~~~~-----~~~~l~~i~~~~--~~~  119 (202)
                      +..+.+|+..  +-||++-.+.+.-.|+.+.++|+|++.+++.+     |.....+.+     +...+....+.+  -.+
T Consensus         7 e~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v~~   86 (197)
T d2p10a1           7 ELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRH   86 (197)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSS
T ss_pred             HHHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhccc
Confidence            3555666543  78999888999999999999999999988743     111111111     111222222222  136


Q ss_pred             cEEEEecC----CCCHHHHH-HHHHhCCCEEEE
Q psy16780        120 VDVYLDGG----VRYGTDVF-KALALGAKMVFV  147 (202)
Q Consensus       120 ipiia~GG----I~~~~D~~-kal~~GAd~V~i  147 (202)
                      +|||++.+    ..+-...+ +...+|+.+|.+
T Consensus        87 iPviaD~dG~g~~~nv~rtv~~~~~aG~agI~~  119 (197)
T d2p10a1          87 TPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQN  119 (197)
T ss_dssp             SCEEEEECTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred             CceEEecCCCCcchhHHHHHHHHHHcCCeEEec
Confidence            99999643    34444433 444589999975

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=1.1  Score=35.51  Aligned_cols=110  Identities=20%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             cCHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEc
Q psy16780         73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVG  148 (202)
Q Consensus        73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig  148 (202)
                      .+|++++... +.|+|.+-++-+.-.....+.|  +++.|.++.+.+  ++|++.-||=.. -+++.+++..|..=|-++
T Consensus       154 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~--~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~  231 (284)
T d1gvfa_         154 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVA  231 (284)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred             CCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccc--cCCeEeeCCCCCCHHHHHHHHHcCeEEEEec
Confidence            3578877654 7999999887532222223333  567789998888  799999887554 566778888999999999


Q ss_pred             HHHHHHhh-------hcCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        149 RPALWGLA-------HSGK------SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       149 ~~~l~~~~-------~~G~------~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                      |.+-.+..       .+.+      .-.....+.+++-++..|..+|..
T Consensus       232 T~l~~a~~~~~~~~l~~n~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~  280 (284)
T d1gvfa_         232 TELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA  280 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            96643211       1111      113344556677777777777764

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=93.37  E-value=0.11  Score=40.08  Aligned_cols=78  Identities=23%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH----------HHHHHHhCCCEEEE
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD----------VFKALALGAKMVFV  147 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D----------~~kal~~GAd~V~i  147 (202)
                      ++...+.|++++..+.+             .+..+++.. ++-.++.+.||+-..+          ..+++..|||.+.+
T Consensus       148 ~~~~~~~g~~g~v~s~~-------------~~~~~r~~~-~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIV  213 (237)
T d1dbta_         148 SKQAEESGLDGVVCSVH-------------EAKAIYQAV-SPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVV  213 (237)
T ss_dssp             HHHHHHTTCSEEECCGG-------------GHHHHTTTS-CTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEE
T ss_pred             HHhhhhcCcceeecchh-------------hhhhhcccc-ccceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEE
Confidence            34566788888776432             123333333 2455778888865322          56788899999999


Q ss_pred             cHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780        148 GRPALWGLAHSGKSGVRKVLDILINEFD  175 (202)
Q Consensus       148 g~~~l~~~~~~G~~~v~~~i~~l~~~L~  175 (202)
                      ||+++.+   ..+   .+..+.++++++
T Consensus       214 GR~I~~s---~dP---~~aa~~i~~~ie  235 (237)
T d1dbta_         214 GRSITKA---EDP---VKAYKAVRLEWE  235 (237)
T ss_dssp             CHHHHTS---SCH---HHHHHHHHHHHH
T ss_pred             CCcccCC---CCH---HHHHHHHHHHHc
Confidence            9999853   233   244556666554

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.22  E-value=0.063  Score=40.21  Aligned_cols=42  Identities=12%  Similarity=0.235  Sum_probs=36.6

Q ss_pred             cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .++.+.++++.+++||++-+ +.++++++++.++|+|+|.++.
T Consensus       163 ~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGs  205 (222)
T d1y0ea_         163 DFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGG  205 (222)
T ss_dssp             HHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence            46789999999999999865 4699999999999999999954

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=93.17  E-value=0.24  Score=38.76  Aligned_cols=73  Identities=19%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE-----ecCC-CCHH-------HHHHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL-----DGGV-RYGT-------DVFKALA  139 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia-----~GGI-~~~~-------D~~kal~  139 (202)
                      .+++++..+.+.|||.|.+...-  ...+-.|+...+..+++.+  ++||..     .|+. .|..       |+..+..
T Consensus         8 ~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~--~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~   83 (247)
T d1twda_           8 YSMECALTAQQNGADRVELCAAP--KEGGLTPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRE   83 (247)
T ss_dssp             SSHHHHHHHHHTTCSEEEECBCG--GGTCBCCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEcCCc--ccCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999996531  1112246777788887777  788877     3443 3444       4445556


Q ss_pred             hCCCEEEEcH
Q psy16780        140 LGAKMVFVGR  149 (202)
Q Consensus       140 ~GAd~V~ig~  149 (202)
                      +|||+|.+|-
T Consensus        84 ~G~dGvV~G~   93 (247)
T d1twda_          84 LGFPGLVTGV   93 (247)
T ss_dssp             TTCSEEEECC
T ss_pred             cCCCeEEEEE
Confidence            8999999995

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=92.97  E-value=0.59  Score=32.88  Aligned_cols=90  Identities=21%  Similarity=0.142  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcCCCEEEEec-cC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCC
Q psy16780         53 WSDVTWLKTITKLPIVLKGI-LT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~-~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      ..+++.+-+..+.-|+.=+. .+ .+.++.+.+.++|.|-+|...++.    .+.. +.+..+++....++||++-|++.
T Consensus        20 ~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~----~~~~~~~~~~l~~~~~~~i~iivGG~~~   95 (137)
T d1ccwa_          20 NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG----EIDCKGLRQKCDEAGLEGILLYVGGNIV   95 (137)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH----HHHHTTHHHHHHHTTCTTCEEEEEESCS
T ss_pred             HHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccc----hHHHHHHHHHHHHhccCCCEEEEeCCcC
Confidence            34666666666777764333 34 466788899999999998854321    1122 23344444333479999888775


Q ss_pred             C----HHHHHH-HHHhCCCEEE
Q psy16780        130 Y----GTDVFK-ALALGAKMVF  146 (202)
Q Consensus       130 ~----~~D~~k-al~~GAd~V~  146 (202)
                      +    ..++.+ .-++|.|.|.
T Consensus        96 ~~~~~~~~~~~~l~~~Gv~~if  117 (137)
T d1ccwa_          96 VGKQHWPDVEKRFKDMGYDRVY  117 (137)
T ss_dssp             SSSCCHHHHHHHHHHTTCSEEC
T ss_pred             CCccccHHHHHHHHHcCCCEEE
Confidence            4    454444 4468999875

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=92.81  E-value=1.8  Score=34.45  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             CHHHHHHHH-HcCCcEEEeeccCcCCCCCc--c--chHHHHHHHHHHhCCCcEEEEecCC--------------------
Q psy16780         74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYV--P--ASIEALPEIAKAVGHKVDVYLDGGV--------------------  128 (202)
Q Consensus        74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~--~--~~~~~l~~i~~~~~~~ipiia~GGI--------------------  128 (202)
                      +|++|+... +.|+|.+-++-+.-...+.+  .  -+++.|.++.+.+  ++|+..-||=                    
T Consensus       154 ~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~  231 (305)
T d1rvga_         154 NPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGEA  231 (305)
T ss_dssp             CHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCSC
T ss_pred             CHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc--CCCeeccCCccccHHHHhhhcccCcccCCC
Confidence            588888855 68999999875321122211  2  3667789998887  7999998862                    


Q ss_pred             --CCHHHHHHHHHhCCCEEEEcHHHHHHhh-------hcC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780        129 --RYGTDVFKALALGAKMVFVGRPALWGLA-------HSG-----K-SGVRKVLDILINEFDQALALSGCT  184 (202)
Q Consensus       129 --~~~~D~~kal~~GAd~V~ig~~~l~~~~-------~~G-----~-~~v~~~i~~l~~~L~~~m~~~G~~  184 (202)
                        .+.+|+.+++..|..=|-+++-+-.+..       .+.     + .-.....+.+++-++..|..+|..
T Consensus       232 sG~~~e~i~~ai~~GV~KiNi~T~l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fgS~  302 (305)
T d1rvga_         232 AGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV  302 (305)
T ss_dssp             BCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCCHHHHHHHHHcCeEEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              3478899999999999999996544311       111     1 123344556677777777777764

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.10  E-value=0.46  Score=37.05  Aligned_cols=73  Identities=19%  Similarity=0.144  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ++.......+.||+++.|-.-  ..+.+|  +.+.+..+++.+  ++||+.-==|-++.++.++...|||+|.+=-.++
T Consensus        64 d~~~~a~~~~~gA~aiSVLTd--~~~F~G--s~~dl~~v~~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L  136 (247)
T d1a53a_          64 DPIEYSKFMERYAVGLSILTE--EKYFNG--SYETLRKIASSV--SIPILMKDFIVKESQIDDAYNLGADTVLLIVKIL  136 (247)
T ss_dssp             CHHHHHHHHTTTCSEEEEECC--CTTTCC--CHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGS
T ss_pred             CHHHHHHHHHhCCCeEEEecC--cccccc--chHHHHHHHhcc--ccceeecccccChHHHHHHHHhhcchhhhhhhhc
Confidence            454545677899999988431  111122  556777787777  8999999999999999999999999998765544

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.42  Score=37.46  Aligned_cols=74  Identities=15%  Similarity=0.037  Sum_probs=55.2

Q ss_pred             cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      .++..+....+.||++|.|-.-  ..+.+|  +.+.+..+++.+  ++||+.-==|-++.++.++..+|||+|.+=.+.+
T Consensus        68 ~~p~~~a~~~~~gA~aiSVLTe--~~~F~G--s~~~l~~v~~~~--~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L  141 (254)
T d1piia2          68 FDPARIAAIYKHYASAISVLTD--EKYFQG--SFNFLPIVSQIA--PQPILCKDFIIDPYQIYLARYYQADACLLMLSVL  141 (254)
T ss_dssp             CCHHHHHHHHTTTCSEEEEECC--STTTCC--CTTHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTC
T ss_pred             chhHHHHHHHHhccCceEEecc--cccCCC--CHHHHHHHHhcc--ccccchhcccCcHHHHHHHHhhccchhhhhHhhh
Confidence            4566677788999999988542  111112  345567777776  7999999999999999999999999998755443

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.72  E-value=0.061  Score=42.60  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=46.8

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEE-EecCCCCHHHHHHHH----HhCCCEEEEcH
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVY-LDGGVRYGTDVFKAL----ALGAKMVFVGR  149 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipii-a~GGI~~~~D~~kal----~~GAd~V~ig~  149 (202)
                      ..++.+.+.|++++.+.|+.|....-.... .+.+..+.+.   ..+++ +.|+. +..++.+..    .+|||++++-.
T Consensus        24 ~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~---~~~~i~gv~~~-st~~~i~~a~~a~~~Ga~~~~~~~   99 (293)
T d1w3ia_          24 IHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV---TNKIIFQVGGL-NLDDAIRLAKLSKDFDIVGIASYA   99 (293)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT---CSCEEEECCCS-CHHHHHHHHHHGGGSCCSEEEEEC
T ss_pred             HHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhh---ccccccccccc-hhhhhhhhhhhhhhhccccccccc
Confidence            446788899999999977655321111111 1223333222   33333 45555 444444433    36999999887


Q ss_pred             HHHHHhhhcChHHHHHHHHHH
Q psy16780        150 PALWGLAHSGKSGVRKVLDIL  170 (202)
Q Consensus       150 ~~l~~~~~~G~~~v~~~i~~l  170 (202)
                      |+.+.  .-..+++.++++.+
T Consensus       100 P~~~~--~~~~~~i~~~f~~I  118 (293)
T d1w3ia_         100 PYYYP--RMSEKHLVKYFKTL  118 (293)
T ss_dssp             CCSCS--SCCHHHHHHHHHHH
T ss_pred             cchhc--cchHHHHHHHHHHH
Confidence            76431  11244444444444

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=91.51  E-value=0.6  Score=36.74  Aligned_cols=82  Identities=23%  Similarity=0.105  Sum_probs=54.1

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc---CC-CCCccch----HHHHHHHHHHhCCCcEEEEec--CCCCHHH
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG---RQ-LDYVPAS----IEALPEIAKAVGHKVDVYLDG--GVRYGTD  133 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg---~~-~~~~~~~----~~~l~~i~~~~~~~ipiia~G--GI~~~~D  133 (202)
                      +-|+.+=.+.+.-.|+.+.++|.+++-+++.+-   .. .|.+..+    ...++.|++.+  ++||+++.  |-.++.+
T Consensus        15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~--~lPv~~D~d~GyG~~~~   92 (275)
T d1s2wa_          15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDADTGYGNFNN   92 (275)
T ss_dssp             SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECCSSCSSHHH
T ss_pred             CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc--CCceeEecccccccchH
Confidence            567777788999999999999999999987421   11 1222222    22345565555  89999965  6667666


Q ss_pred             HH----HHHHhCCCEEEE
Q psy16780        134 VF----KALALGAKMVFV  147 (202)
Q Consensus       134 ~~----kal~~GAd~V~i  147 (202)
                      +.    +...+||.++.+
T Consensus        93 v~~tv~~~~~aGaagi~i  110 (275)
T d1s2wa_          93 ARRLVRKLEDRGVAGACL  110 (275)
T ss_dssp             HHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHhccceeEe
Confidence            65    444579988876

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.41  E-value=1.4  Score=30.06  Aligned_cols=94  Identities=10%  Similarity=0.080  Sum_probs=60.6

Q ss_pred             ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHH------HcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780         51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGV------EMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL  124 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~------~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia  124 (202)
                      ...+.++.+-+..+... |....+.++|-.+.      ....|.|.++-.-.     +..-++.+.++++....++|||+
T Consensus        12 ~~~~~l~~~L~~~g~~~-v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP-----~~dG~el~~~ir~~~~~~~piI~   85 (128)
T d2r25b1          12 VNQEVIKRMLNLEGIEN-IELACDGQEAFDKVKELTSKGENYNMIFMDVQMP-----KVDGLLSTKMIRRDLGYTSPIVA   85 (128)
T ss_dssp             HHHHHHHHHHHHTTCCC-EEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCS-----SSCHHHHHHHHHHHSCCCSCEEE
T ss_pred             HHHHHHHHHHHHcCCeE-EEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCC-----CCCHHHHHHHHHHccCCCCeEEE
Confidence            34556666666666542 33456666654332      23577777754310     01235666777665555799999


Q ss_pred             ecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780        125 DGGVRYGTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       125 ~GGI~~~~D~~kal~~GAd~V~ig~~~  151 (202)
                      ..+-.+..+..+++.+||+.+. ..||
T Consensus        86 lT~~~~~~~~~~~~~~G~~~~l-~KP~  111 (128)
T d2r25b1          86 LTAFADDSNIKECLESGMNGFL-SKPI  111 (128)
T ss_dssp             EESCCSHHHHHHHHHTTCSEEE-ESSC
T ss_pred             EECCCCHHHHHHHHHcCCCEEE-ECCC
Confidence            8888999999999999999874 4454

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.38  E-value=0.79  Score=37.24  Aligned_cols=128  Identities=22%  Similarity=0.264  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCC-c--cchHHHHHHHHHHhCCCcEEE
Q psy16780         53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDY-V--PASIEALPEIAKAVGHKVDVY  123 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~-~--~~~~~~l~~i~~~~~~~ipii  123 (202)
                      .+.++++.+ ++.||.+|-.  .++++    ++.+...|-+-|.+.-+|-+...+ .  ..+...+..+++..  ..|||
T Consensus       191 ~~LL~~~g~-t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~--~lPVi  267 (338)
T d1vr6a1         191 FRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPIL  267 (338)
T ss_dssp             HHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEE
T ss_pred             HHHHHHhhc-cCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccceeeccc--cCcee
Confidence            556666654 5899999954  56655    566778999999987765332221 1  23555677665543  68999


Q ss_pred             E----ecCCCCHHH--HHHHHHhCCCEEEEcHHHHH-HhhhcChHHH-HHHHHHHHHHHHHHHHHhCC
Q psy16780        124 L----DGGVRYGTD--VFKALALGAKMVFVGRPALW-GLAHSGKSGV-RKVLDILINEFDQALALSGC  183 (202)
Q Consensus       124 a----~GGI~~~~D--~~kal~~GAd~V~ig~~~l~-~~~~~G~~~v-~~~i~~l~~~L~~~m~~~G~  183 (202)
                      .    +||-+..--  +..++++|||++++=...=- ...+.|+..+ -+-++.+.++++.+-...|.
T Consensus       268 ~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P~~AlsDg~q~l~~~~~~~ll~~l~~i~~~vg~  335 (338)
T d1vr6a1         268 VDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGV  335 (338)
T ss_dssp             ECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred             eCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCcccCCCCccccCCHHHHHHHHHHHHHHHHHhcc
Confidence            8    467666432  34667789999998652110 0013343221 13456677777777666653

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.90  E-value=0.14  Score=40.05  Aligned_cols=52  Identities=23%  Similarity=0.379  Sum_probs=43.4

Q ss_pred             HhhhccCc------cccHHHHHHHHHhcCCCEEEE-eccCHHHHHHHHHcCCcEEEeec
Q psy16780         42 YITSQLDE------TINWSDVTWLKTITKLPIVLK-GILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        42 ~~~~~~d~------~~~~~~i~~i~~~~~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .+|+.+.|      -.....++.+++..++||+|- ++-++.++..+.+.|+|+|-+..
T Consensus       151 ~vMplgsPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLvns  209 (243)
T d1wv2a_         151 AVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNT  209 (243)
T ss_dssp             EEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred             eeeecccccccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEech
Confidence            37777888      335678999999899999998 45799999999999999998854

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

Probab=90.81  E-value=0.4  Score=38.88  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcCCCEEE--Eec---cCHH-HHHHHHH-cCCcEEEeeccCc
Q psy16780         53 WSDVTWLKTITKLPIVL--KGI---LTAE-DAKIGVE-MGASAIMVSNHGG   96 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~v--K~~---~~~~-~a~~l~~-aG~d~I~v~~~gg   96 (202)
                      .++++++++ .++||++  |.-   .|.+ .++.+.+ .|+|+++|+..+|
T Consensus       132 ~~ii~~l~~-~g~~VflD~K~~DIgnTv~~ya~a~~~~~~~DavTVhp~~G  181 (332)
T d2ffca1         132 KNVFDYLHH-LNVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMG  181 (332)
T ss_dssp             HHHHHHHHH-HTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC
T ss_pred             HHHHHHhcc-cccceeehhhhccHHHHHHHHHHHHHhccCCCEEEecccch
Confidence            346666665 3889884  543   3443 3555555 7999999987655

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=90.46  E-value=0.18  Score=40.02  Aligned_cols=45  Identities=18%  Similarity=0.075  Sum_probs=35.7

Q ss_pred             CccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc
Q psy16780         48 DETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH   94 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~   94 (202)
                      .++...+.++++|+.+++|+.++. +.++++++.+  .++|+++|+..
T Consensus       186 ~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSA  231 (271)
T d1ujpa_         186 LPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSA  231 (271)
T ss_dssp             ---CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHH
T ss_pred             chHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHH
Confidence            345567899999999999999994 5789999875  59999999653

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=1.2  Score=35.12  Aligned_cols=82  Identities=20%  Similarity=0.301  Sum_probs=56.4

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc----CC-CCCccchHH----HHHHHHHHhCCCcEEEEec--CCCC-H
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG----RQ-LDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRY-G  131 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg----~~-~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~-~  131 (202)
                      +-|+.+=.+.++-.|+.+.++|.+++-+++.+-    .. .|.+..+++    .++.+.+.+  ++|||+++  |-.+ +
T Consensus        15 ~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~--~~Pvi~D~d~GyG~~~   92 (289)
T d1muma_          15 ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDADIGFGSSA   92 (289)
T ss_dssp             CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEECTTCSSSSH
T ss_pred             CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhccc--CCCeeecccccccccc
Confidence            568888888999999999999999999987421    11 233333333    356666666  89999976  3343 4


Q ss_pred             HHH----HHHHHhCCCEEEE
Q psy16780        132 TDV----FKALALGAKMVFV  147 (202)
Q Consensus       132 ~D~----~kal~~GAd~V~i  147 (202)
                      ..+    .+...+|+.+|.|
T Consensus        93 ~~v~~~v~~~~~aGvagi~i  112 (289)
T d1muma_          93 FNVARTVKSMIKAGAAGLHI  112 (289)
T ss_dssp             HHHHHHHHHHHHHTCSEEEE
T ss_pred             hHHHHHHHHHHHCCCCEEEe
Confidence            444    3445589988876

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=89.72  E-value=0.49  Score=36.98  Aligned_cols=73  Identities=14%  Similarity=-0.031  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780         74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus        74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ++.......+.||++|.|-.-  ....+|  +.+.+..+++.+  ++||+.-==|-++.++.++..+|||+|.+=-.++
T Consensus        62 d~~~~a~~ye~GA~aiSVLTd--~~~F~G--s~~~l~~vr~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L  134 (251)
T d1i4na_          62 SLEDFIRMYDELADAISILTE--KHYFKG--DPAFVRAARNLT--CRPILAKDFYIDTVQVKLASSVGADAILIIARIL  134 (251)
T ss_dssp             CHHHHHHHHHHHCSEEEEECC--CSSSCC--CTHHHHHHHTTC--CSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGS
T ss_pred             cHHHHHHHHhcCCcceEEecc--cCCCCC--CHHHHHHHhhcc--cCchhhhhhhhCHHHHHHHHhhccceEEeecccc
Confidence            455544555789999988542  111112  345667776655  8999999999999999999999999998765554

>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Transaldolase
species: Escherichia coli [TaxId: 562]

Probab=89.49  E-value=1.9  Score=34.45  Aligned_cols=100  Identities=19%  Similarity=0.220  Sum_probs=61.8

Q ss_pred             cHHHHHHHHHh--cCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC-------------CccchHHHHHHHHH--
Q psy16780         52 NWSDVTWLKTI--TKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD-------------YVPASIEALPEIAK--  114 (202)
Q Consensus        52 ~~~~i~~i~~~--~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~--  114 (202)
                      +|+=|+.++..  -++++-+=++++++.+..+.++|+.+|...  -||-.+             .+.+-...+.++.+  
T Consensus       135 T~eGi~A~~~L~~~GI~vN~TlvFS~~Qa~~aa~Aga~~iSpf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~  212 (316)
T d1onra_         135 TWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYY  212 (316)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEB--SHHHHHHHHHSSSCCCCCGGGCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCcccceeeecHHHHHHHHHcCCeEEeee--ecchhhhhhcccccccccccCCchHHHHHHHHHHH
Confidence            35544444432  266666666678888999999999988763  222100             11122333444433  


Q ss_pred             -HhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780        115 -AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA  156 (202)
Q Consensus       115 -~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~  156 (202)
                       ..+.+..|++ -.+|+..++..+  +|+|.+-+.-.++..+.
T Consensus       213 k~~g~~t~v~~-AS~r~~~~v~~l--aG~D~~Ti~p~~l~~l~  252 (316)
T d1onra_         213 KEHGYETVVMG-ASFRNIGEILEL--AGCDRLTIAPALLKELA  252 (316)
T ss_dssp             HHTTCCCEEEE-BCCSSHHHHHHT--TTSSEEEECHHHHHHHH
T ss_pred             HHcCCCceeeh-hhccchhhHHHH--hcCCceecCHHHHHHHh
Confidence             3333555665 569999999764  69999999888877543

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=89.04  E-value=2.4  Score=32.60  Aligned_cols=69  Identities=10%  Similarity=0.041  Sum_probs=47.9

Q ss_pred             cCHHHHHHHHHcCCcEEEeec-cCcCCCCCccchHHHHHHHHHHhC-CCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780         73 LTAEDAKIGVEMGASAIMVSN-HGGRQLDYVPASIEALPEIAKAVG-HKVDVYL-DGGVRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~~~~-~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~  149 (202)
                      .++..++.+..+|.|+|.++. |+       +.+.+.+..+..+.. ..++.+. .- -.++..+.++|.+||++|++-.
T Consensus        25 ~~p~~~ei~a~~G~Dfv~iD~EHg-------~~~~~~~~~~i~a~~~~g~~~~VRvp-~~~~~~i~~~LD~Ga~GIivP~   96 (253)
T d1dxea_          25 SNPISTEVLGLAGFDWLVLDGEHA-------PNDISTFIPQLMALKGSASAPVVRVP-TNEPVIIKRLLDIGFYNFLIPF   96 (253)
T ss_dssp             CSHHHHHHHTTSCCSEEEEESSSS-------SCCHHHHHHHHHHTTTCSSEEEEECS-SSCHHHHHHHHHTTCCEEEESC
T ss_pred             CCHHHHHHHHcCCCCEEEEecccC-------CCChhHHHHHHHHHhccCCCceecCC-CCCHHHHHHHHhcCccEEEecc
Confidence            678999999999999999986 43       334444444433332 2344343 33 2688999999999999998854

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=89.02  E-value=1  Score=32.77  Aligned_cols=87  Identities=18%  Similarity=0.121  Sum_probs=53.3

Q ss_pred             HHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         55 DVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      ++...-+..+.-|+.-.. .++ +.++.+.+.++|.|.+|...++.    .+... .+..+++.-..++||+ .||+--.
T Consensus        56 ~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~~----~~~~~~l~~~L~~~g~~~v~Vi-vGG~ip~  130 (168)
T d7reqa2          56 VIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGH----LTLVPALRKELDKLGRPDILIT-VGGVIPE  130 (168)
T ss_dssp             HHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSCH----HHHHHHHHHHHHHTTCTTSEEE-EEESCCG
T ss_pred             HHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCcccc----hHHHHHHHHHHHhcCCCCeEEE-EeCCCCH
Confidence            444444555666665333 344 55788889999999998754321    12222 2233333212457776 4777778


Q ss_pred             HHHHHHHHhCCCEEE
Q psy16780        132 TDVFKALALGAKMVF  146 (202)
Q Consensus       132 ~D~~kal~~GAd~V~  146 (202)
                      +|..+...+|.+.|.
T Consensus       131 ~d~~~l~~~Gv~~iF  145 (168)
T d7reqa2         131 QDFDELRKDGAVEIY  145 (168)
T ss_dssp             GGHHHHHHHTEEEEE
T ss_pred             HHHHHHHhCCCCEEE
Confidence            888888899988764

>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: EAL domain-like
family: EAL domain
domain: Hypothetical protein YkuI, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.00  E-value=0.73  Score=35.23  Aligned_cols=93  Identities=9%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccch---HHHHHHHHHHhCCCcEEEEecC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS---IEALPEIAKAVGHKVDVYLDGG  127 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~---~~~l~~i~~~~~~~ipiia~GG  127 (202)
                      ..+.++.+++ .++-+.+... ........+.+.++|+|.++.+--+..+.....   ...+..+++.+  .+++|+.| 
T Consensus       134 ~~~~l~~L~~-~G~~lalddfG~~~~sl~~L~~l~~d~IKld~s~i~~~~~~~~~~~~l~~l~~~a~~~--~~~vIaeG-  209 (261)
T d2basa1         134 LYHMLAYYRT-YGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKI--GAALLYED-  209 (261)
T ss_dssp             HHHHHHHHHT-TTCEEEEEEETTTBCCHHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHH--TCEEEEEC-
T ss_pred             HHHHHHHHhh-cCceeeecCCccCccchhHHhhhhhhhhhcccccccccccchhhHHHHHHHHHHHHHc--CCEEEEEe-
Confidence            3445555543 3667766543 223344556667788888865321222222222   33344555555  78999865 


Q ss_pred             CCCHHHHHHHHHhCCCEEEEcH
Q psy16780        128 VRYGTDVFKALALGAKMVFVGR  149 (202)
Q Consensus       128 I~~~~D~~kal~~GAd~V~ig~  149 (202)
                      |-|.++...+..+|+++++ |.
T Consensus       210 VE~~~~~~~l~~lg~d~~Q-G~  230 (261)
T d2basa1         210 IEANFQLQYAWRNGGRYFQ-GY  230 (261)
T ss_dssp             CCSHHHHHHHHHTTEEEEC-ST
T ss_pred             CCcHHHHHHHHHcCCCEEE-CC
Confidence            9999999999999999886 53

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=87.31  E-value=2.1  Score=33.65  Aligned_cols=84  Identities=20%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             CCCEEEEec--cCHHHH-HHHHHcCCcEEEeeccCcC---CCC---CccchHHHHHHHHHHhCCCcEEEE--ecCCCCHH
Q psy16780         64 KLPIVLKGI--LTAEDA-KIGVEMGASAIMVSNHGGR---QLD---YVPASIEALPEIAKAVGHKVDVYL--DGGVRYGT  132 (202)
Q Consensus        64 ~~Pv~vK~~--~~~~~a-~~l~~aG~d~I~v~~~gg~---~~~---~~~~~~~~l~~i~~~~~~~ipiia--~GGI~~~~  132 (202)
                      ..+.+....  ...+.. +...+.|.+++.+.-....   ...   .....++.+.++++..  +.|++.  .|.+.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~vivk~v~~~~~~~  173 (329)
T d1p0ka_          96 NGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVKEVGFGMSKA  173 (329)
T ss_dssp             SSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEEEESSCCCHH
T ss_pred             cceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHc--CCCcEEEecCCcchHH
Confidence            344444433  334444 4456789999988653211   111   1123456677777766  455555  78889999


Q ss_pred             HHHHHHHhCCCEEEEcH
Q psy16780        133 DVFKALALGAKMVFVGR  149 (202)
Q Consensus       133 D~~kal~~GAd~V~ig~  149 (202)
                      ++.++..+|||++.++.
T Consensus       174 ~a~~~~~~GaD~i~v~~  190 (329)
T d1p0ka_         174 SAGKLYEAGAAAVDIGG  190 (329)
T ss_dssp             HHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHhcCCCEEEEcC
Confidence            99999999999999853

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=86.99  E-value=2.9  Score=27.75  Aligned_cols=92  Identities=16%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHH-HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDA-KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY  130 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a-~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~  130 (202)
                      ..+.++.+-+..+.-|. ....+.+++ +.+.+.-.|.|.++-.-.     +..-++.+.++++. .+++|||...+-.+
T Consensus        13 ~~~~l~~~L~~~g~~v~-~~a~~~~~al~~~~~~~~dliilD~~mp-----~~~G~e~~~~ir~~-~~~~pvi~ls~~~~   85 (118)
T d1u0sy_          13 MRMMLKDIITKAGYEVA-GEATNGREAVEKYKELKPDIVTMDITMP-----EMNGIDAIKEIMKI-DPNAKIIVCSAMGQ   85 (118)
T ss_dssp             HHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHHHCCSEEEEECSCG-----GGCHHHHHHHHHHH-CTTCCEEEEECTTC
T ss_pred             HHHHHHHHHHHcCCceE-EEECCHHHHHHHHHhccCCEEEEecCCC-----CCCHHHHHHHHHHh-CCCCcEEEEEccCC
Confidence            44556666566666553 233555554 556677789888864310     01235667777654 45799999888999


Q ss_pred             HHHHHHHHHhCCCEEEEcHHH
Q psy16780        131 GTDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       131 ~~D~~kal~~GAd~V~ig~~~  151 (202)
                      ...+.+++.+||+.... .||
T Consensus        86 ~~~~~~a~~~Ga~~yl~-KP~  105 (118)
T d1u0sy_          86 QAMVIEAIKAGAKDFIV-KPF  105 (118)
T ss_dssp             HHHHHHHHHTTCCEEEE-SSC
T ss_pred             HHHHHHHHHcCCCEEEE-CCC
Confidence            99999999999998744 565

>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: GlpP-like
family: GlpP-like
domain: Glycerol uptake operon antiterminator-related protein TM1436
species: Thermotoga maritima [TaxId: 2336]

Probab=86.60  E-value=0.71  Score=33.97  Aligned_cols=84  Identities=20%  Similarity=0.278  Sum_probs=50.9

Q ss_pred             HHHHHHHhcCCCEEEEec-c---CHH-HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780         55 DVTWLKTITKLPIVLKGI-L---TAE-DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR  129 (202)
Q Consensus        55 ~i~~i~~~~~~Pv~vK~~-~---~~~-~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~  129 (202)
                      .++.-++ .++..+-+.- .   +.+ ..+.+.+..+|+|.+  -+|.        .  .+.+.+.. .+.|||+.|=|+
T Consensus        82 ~i~~Ak~-~Gl~tIqR~FliDS~al~~~~~~i~~~~PD~IEi--LPG~--------i--~p~ii~~~-~~~piIAGGLI~  147 (172)
T d1vkfa_          82 NYVVAKK-NGIPAVLRFFALDSKAVERGIEQIETLGVDVVEV--LPGA--------V--APKVARKI-PGRTVIAAGLVE  147 (172)
T ss_dssp             HHHHHHH-TTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEE--ESGG--------G--HHHHHTTS-TTSEEEEESCCC
T ss_pred             HHHHHHH-cCCeEEEEEEeeehHHHHHHHHHHhhcCCCEEEE--CCch--------h--hHHHHHHh-cCCCEEeeCCcC
Confidence            4554443 4666666653 2   233 234555677888877  2110        1  12222233 257999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780        130 YGTDVFKALALGAKMVFVGRPALW  153 (202)
Q Consensus       130 ~~~D~~kal~~GAd~V~ig~~~l~  153 (202)
                      +-+|+..+++.| .+|.-+..-+|
T Consensus       148 ~~edv~~al~~g-~aVSTS~~~LW  170 (172)
T d1vkfa_         148 TEEEAREILKHV-SAISTSSRILW  170 (172)
T ss_dssp             SHHHHHHHTTTS-SEEEECCHHHH
T ss_pred             CHHHHHHHHhcC-eEEECCChHHh
Confidence            999999999755 48876665554

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=86.55  E-value=0.22  Score=39.30  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=35.8

Q ss_pred             ccHHHHHHHHHhcCCCEEE-EeccCHHHHHHHHHcCCcEEEee
Q psy16780         51 INWSDVTWLKTITKLPIVL-KGILTAEDAKIGVEMGASAIMVS   92 (202)
Q Consensus        51 ~~~~~i~~i~~~~~~Pv~v-K~~~~~~~a~~l~~aG~d~I~v~   92 (202)
                      ..++.++++++.+++||+. +++.+.+++...+.+|||+|-+.
T Consensus       228 ~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig  270 (311)
T d1ep3a_         228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG  270 (311)
T ss_dssp             HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             hhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEec
Confidence            3588999999999999884 45689999988889999999984

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.57  E-value=3.6  Score=27.44  Aligned_cols=93  Identities=15%  Similarity=0.078  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHH-HHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAK-IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~-~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+.++.+-+..+.--.|....+.++|. .+.+...|.|.++-.-.     +..-++.++++++......||+...+-.+.
T Consensus        14 ~~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP-----~~dG~e~~~~ir~~~~~~~~ii~~t~~~~~   88 (123)
T d1dz3a_          14 VSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMP-----HLDGLAVLERIRAGFEHQPNVIMLTAFGQE   88 (123)
T ss_dssp             HHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-----SSCHHHHHHHHHHHCSSCCEEEEEEETTCH
T ss_pred             HHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCC-----CCCHHHHHHHHHhcCCCCCeEEEEECcCCH
Confidence            444555444333223445556766654 45566788888765310     012356677777655445678887788899


Q ss_pred             HHHHHHHHhCCCEEEEcHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~  151 (202)
                      ....+++.+||+.+.. .|+
T Consensus        89 ~~~~~a~~~Ga~~~l~-KP~  107 (123)
T d1dz3a_          89 DVTKKAVELGASYFIL-KPF  107 (123)
T ss_dssp             HHHHHHHHTTCEEEEE-CSS
T ss_pred             HHHHHHHHCCCCEEEE-CCC
Confidence            9999999999988653 454

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=85.49  E-value=0.62  Score=36.18  Aligned_cols=51  Identities=20%  Similarity=0.389  Sum_probs=42.3

Q ss_pred             hhhccCccc------cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         43 ITSQLDETI------NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        43 ~~~~~d~~~------~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      +|+.+.|-.      ....|+.|++..++||+|=- +-++.+|..+.+.|+|+|-+..
T Consensus       150 vMPlgsPIGSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvNT  207 (251)
T d1xm3a_         150 IMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT  207 (251)
T ss_dssp             BEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred             HHHhhhhhhcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEech
Confidence            677666654      36689999999999999974 4789999999999999998854

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.46  E-value=3.9  Score=27.79  Aligned_cols=90  Identities=12%  Similarity=0.066  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHHHH-HHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAKIG-VEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l-~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+.++.+-+..+.-|.  ...+.+.|..+ .+...|.|.++-.-.     +....+.+..+++. .+++|||...|-.+.
T Consensus        13 ~~~l~~~L~~~g~~v~--~a~~~~eAl~~l~~~~~dlvilD~~mp-----~~~G~e~~~~lr~~-~~~~piI~lT~~~~~   84 (137)
T d1ny5a1          13 RGLLEEYLSMKGIKVE--SAERGKEAYKLLSEKHFNVVLLDLLLP-----DVNGLEILKWIKER-SPETEVIVITGHGTI   84 (137)
T ss_dssp             HHHHHHHHHHHTCEEE--EESSHHHHHHHHHHSCCSEEEEESBCS-----SSBHHHHHHHHHHH-CTTSEEEEEEETTCH
T ss_pred             HHHHHHHHHHCCCEEE--EECCHHHHHHHhhccccccchHHHhhh-----hhhHHHHHHHHHHh-CCCCCEEEEECCCCH
Confidence            4455555555565544  45677777554 457789888864310     11235667777654 457999998888999


Q ss_pred             HHHHHHHHhCCCEEEEcHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~  151 (202)
                      .++.+++.+||+.... .|+
T Consensus        85 ~~~~~a~~~Ga~dyl~-KP~  103 (137)
T d1ny5a1          85 KTAVEAMKMGAYDFLT-KPC  103 (137)
T ss_dssp             HHHHHHHTTTCCEEEE-ESC
T ss_pred             HHHHHHHHcCCCEEEe-CCC
Confidence            9999999999987754 454

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=85.35  E-value=4.2  Score=27.96  Aligned_cols=91  Identities=13%  Similarity=0.043  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHc--------CCcEEEeeccCcCCCCCccchHHHHHHHHHHhC-CCcEE
Q psy16780         52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEM--------GASAIMVSNHGGRQLDYVPASIEALPEIAKAVG-HKVDV  122 (202)
Q Consensus        52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~a--------G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipi  122 (202)
                      ..+.++.+-+..+...-+-...+.+.|-.+++.        -.|.|.++-.-    . +..-++.+.++++.-. ..+||
T Consensus        15 ~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~m----P-~~~G~el~~~ir~~~~~~~iPv   89 (144)
T d1i3ca_          15 DSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL----P-KKDGREVLAEIKQNPDLKRIPV   89 (144)
T ss_dssp             HHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC----S-SSCHHHHHHHHHHCTTTTTSCE
T ss_pred             HHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECcc----c-cccchHHHHHHHhCcccCCCeE
Confidence            445566555555554444445677776655532        25666664320    0 0123556677765321 36999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780        123 YLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus       123 ia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      |.-.+-.+.++..+++.+||+.+..
T Consensus        90 i~lT~~~~~~~~~~a~~~Ga~~yl~  114 (144)
T d1i3ca_          90 VVLTTSHNEDDVIASYELHVNCYLT  114 (144)
T ss_dssp             EEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEE
Confidence            9988899999999999999998774

>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

Probab=85.30  E-value=2.7  Score=32.57  Aligned_cols=121  Identities=17%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             hhccCccccHHHHHHHHH---hcCCCEEEE--ec----cC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780         44 TSQLDETINWSDVTWLKT---ITKLPIVLK--GI----LT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE  111 (202)
Q Consensus        44 ~~~~d~~~~~~~i~~i~~---~~~~Pv~vK--~~----~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~  111 (202)
                      .+.++++...+.++.+|+   ..+.||.+-  ..    .+   .++.+.+.+.|+|+|.+|--         .+..-+.+
T Consensus        52 ~SHg~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFV---------rs~~Dv~~  122 (258)
T d1pkla2          52 FSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFI---------RSAEQVGD  122 (258)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHHHTCSEEEETTC---------CSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHHhcCCCeEEEeCC---------CCHHHHHH
Confidence            455677766666666665   456665443  22    23   46678899999999988641         12233334


Q ss_pred             HHHHh---CCCcEEEE----ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780        112 IAKAV---GHKVDVYL----DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGC  183 (202)
Q Consensus       112 i~~~~---~~~ipiia----~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~  183 (202)
                      +++.+   +.+++||+    --|+.+-+++.+    -+|+||++|.=|-.  .-+.+.    +-.+.+.+-..+...|.
T Consensus       123 ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~----~sDgImIaRGDLg~--ei~~e~----vp~~Qk~Ii~~~~~~~k  191 (258)
T d1pkla2         123 VRKALGPKGRDIMIICKIENHQGVQNIDSIIE----ESDGIMVARGDLGV--EIPAEK----VVVAQKILISKCNVAGK  191 (258)
T ss_dssp             HHHHHCGGGTTSEEEEEECSHHHHHTHHHHHH----HSSEEEECHHHHTT--TSCHHH----HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCceEEEecCchhhhhhhhHHh----hCCeeeEechhhhh--hcchhh----hhhHHHHHHHHHHHcCC
Confidence            44443   33678888    223444444443    48999999976621  223332    33455556666666664

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.18  E-value=4.3  Score=30.42  Aligned_cols=111  Identities=13%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             HHHHHHHHhcCCCEEEEecc-C----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780         54 SDVTWLKTITKLPIVLKGIL-T----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV  128 (202)
Q Consensus        54 ~~i~~i~~~~~~Pv~vK~~~-~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI  128 (202)
                      +.++++.+....|+.+-... +    .++++.+.+.+-+.++=          .|.+.+.+..+++.....+++-++. |
T Consensus        43 ~~~~~i~~~~~~~is~ev~~~~~~~m~~~a~~l~~~~~ni~VK----------IP~t~~G~~ai~~L~~~Gi~~n~Ta-v  111 (218)
T d1vpxa_          43 QRVKEICDLVKGPVSAEVVSLDYEGMVREARELAQISEYVVIK----------IPMTPDGIKAVKTLSAEGIKTNVTL-V  111 (218)
T ss_dssp             CHHHHHHHHHCSCEEEECSCCSHHHHHHHHHHHHTTCTTEEEE----------EESSHHHHHHHHHHHHTTCCEEEEE-E
T ss_pred             HHHHHHHhccCCcchhhhccCcHHHHHHHHHHHhccccceEEE----------ecccccchHHHHHHHHcCCceeeEE-e
Confidence            36677777678899887652 2    34455565555443221          1334444444333222368888865 8


Q ss_pred             CCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780        129 RYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGC  183 (202)
Q Consensus       129 ~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~  183 (202)
                      .|..+++.|..+||+.|.   ||+-.+...|.++.     .+..+++.+....|.
T Consensus       112 fs~~Qa~~Aa~aga~yis---py~gR~~d~g~d~~-----~~i~~~~~~~~~~~~  158 (218)
T d1vpxa_         112 FSPAQAILAAKAGATYVS---PFVGRMDDLSNDGM-----RMLGEIVEIYNNYGF  158 (218)
T ss_dssp             CSHHHHHHHHHHTCSEEE---EBHHHHHHTTSCHH-----HHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHhcCCCEEE---eeecchhhhcccch-----hhHHHHHHHHhhhcc
Confidence            999999999999999875   34433333454443     222344445555553

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.83  E-value=0.74  Score=36.49  Aligned_cols=68  Identities=16%  Similarity=0.170  Sum_probs=39.4

Q ss_pred             HHHHHHHHcCCcEEEeeccCcCCCCCccc---hHHH----HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780         76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA---SIEA----LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV  147 (202)
Q Consensus        76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~----l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i  147 (202)
                      +.++.+++.|||.|+|++-.-+......+   .++-    +..+++..  +++|  |=.=+.++-+.+|+.+||+.+-=
T Consensus        42 ~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~--~~~i--SIDT~~~eVa~~al~~Ga~iIND  116 (282)
T d1ajza_          42 KHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF--EVWI--SVDTSKPEVIRESAKVGAHIIND  116 (282)
T ss_dssp             HHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC--CCEE--EEECCCHHHHHHHHHTTCCEECC
T ss_pred             HHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcc--cceE--EEEecChHHHHHHHhcCceEEec
Confidence            34577889999999998742211111111   1222    22232222  3443  33448899999999999987743

>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.33  E-value=1.4  Score=34.56  Aligned_cols=122  Identities=19%  Similarity=0.187  Sum_probs=73.0

Q ss_pred             hhhccCccccHHHHHHHHHh---c-CCCEEE--Eec---cC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHH
Q psy16780         43 ITSQLDETINWSDVTWLKTI---T-KLPIVL--KGI---LT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALP  110 (202)
Q Consensus        43 ~~~~~d~~~~~~~i~~i~~~---~-~~Pv~v--K~~---~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~  110 (202)
                      -.+.++++...+.++.+|+.   . +.||.+  ...   .+   .++.+.+.+.|+|+|.+|--         .+.+-+.
T Consensus        51 N~SHg~~~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~~di~~a~~~~vD~ialSFV---------rs~~Di~  121 (265)
T d1a3xa2          51 NFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLRFGVKNGVHMVFASFI---------RTANDVL  121 (265)
T ss_dssp             ETTSCCHHHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHHHHHHHHHHTTCCEECCTTC---------CSHHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHHHhhhccCCceeeeccccchhcccchHHHHHHhhhcccceEeeccC---------CCHHHHH
Confidence            34456666666666666653   2 456543  322   23   46678899999999988541         1233344


Q ss_pred             HHHHHh---CCCcEEEE----ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780        111 EIAKAV---GHKVDVYL----DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGC  183 (202)
Q Consensus       111 ~i~~~~---~~~ipiia----~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~  183 (202)
                      ++++.+   ..+++||+    --|+.+.+++.++    +|+||++|.-|--  .-|.+.+    -.+.+++-..+...|.
T Consensus       122 ~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~----sDgimIaRGDLgv--ei~~e~v----p~~Qk~Ii~~~~~~gk  191 (265)
T d1a3xa2         122 TIREVLGEQGKDVKIIVKIENQQGVNNFDEILKV----TDGVMVARGDLGI--EIPAPEV----LAVQKKLIAKSNLAGK  191 (265)
T ss_dssp             HHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHH----CSEEEEEHHHHHH--HSCHHHH----HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCeEEeeccchHHHhChHHHHhh----cceeEEEccchhh--hccHHHH----HHHHHHHHHHHHHcCC
Confidence            444443   34688888    3467777777665    7999999987631  2333322    3445555556666664

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=84.18  E-value=3.2  Score=32.26  Aligned_cols=69  Identities=22%  Similarity=0.195  Sum_probs=41.2

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++...++|||.|-+.+.  +      +..+....+.......+|+.+..+-.....+.+.-.+|.+.|..|...+++
T Consensus       173 ~~aY~eAGAD~vf~~~~--~------~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~eL~~lGv~~v~~g~~~~~a  241 (275)
T d1s2wa_         173 AEAYRNAGADAILMHSK--K------ADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA  241 (275)
T ss_dssp             HHHHHHTTCSEEEECCC--S------SSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred             HHHHHhcCCCeeeeccc--c------CcHHHHHHHHHhhcCCCCEEEecccccccHHHHHHHcCCCEEEEchHHHHH
Confidence            45678999999987431  1      122333333344444788888543211112345667899999999877753

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=83.45  E-value=3  Score=32.76  Aligned_cols=66  Identities=18%  Similarity=0.112  Sum_probs=44.3

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE---ecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL---DGGVRYGTDVFKALALGAKMVFVGRPALWG  154 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia---~GGI~~~~D~~kal~~GAd~V~ig~~~l~~  154 (202)
                      ++...++|||.|-+.+         +.+.+.+.++++.++  .|+.+   .||-...-+..+.-.+|.+.+..+...++.
T Consensus       172 ~~aY~eAGAD~vf~~~---------~~~~~~~~~~~~~~~--~Pl~~~~~~~~~~p~~s~~eL~~~Gv~~v~~~~~~~~a  240 (289)
T d1muma_         172 AQAYVEAGAEMLFPEA---------ITELAMYRQFADAVQ--VPILANITEFGATPLFTTDELRSAHVAMALYPLSAFRA  240 (289)
T ss_dssp             HHHHHHTTCSEEEETT---------CCCHHHHHHHHHHHC--SCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHHH
T ss_pred             HHHhhhcCCcEEEecC---------CCCHHHHHHHHHhcC--CCEEEeecCcCCCccchHHHHHHhccceEEechHHHHH
Confidence            4567899999998743         335567777888774  45432   344333234556778999999998876654

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.39  E-value=0.56  Score=35.64  Aligned_cols=40  Identities=28%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             HHHHHHHHHh-cCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         53 WSDVTWLKTI-TKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        53 ~~~i~~i~~~-~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      .+.+..+++. .+.||+|+. +.++++++.+.+ ++|+|+|++
T Consensus       175 ~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGS  216 (231)
T d2f6ua1         175 PELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN  216 (231)
T ss_dssp             HHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred             hhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEECh
Confidence            3455555555 479999995 479999999886 799999954

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=83.09  E-value=0.81  Score=34.79  Aligned_cols=41  Identities=29%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             cHHHHHHHHHhc-CCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT-KLPIVLKG-ILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.+..+++.. +.|++|+. +.+++.++.+. .++|+|+|++
T Consensus       168 ~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGS  210 (229)
T d1viza_         168 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN  210 (229)
T ss_dssp             CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred             cchhHHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEECH
Confidence            345666666654 68999985 47999999987 6999999954

>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Isocitrate lyase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.05  E-value=6.5  Score=32.50  Aligned_cols=85  Identities=21%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             CCCEEEEeccCHHHHHHHHHcCCcEEEeeccC-----c-C---CCCCccchH----HHHHHHHHHh--------------
Q psy16780         64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-----G-R---QLDYVPASI----EALPEIAKAV--------------  116 (202)
Q Consensus        64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g-----g-~---~~~~~~~~~----~~l~~i~~~~--------------  116 (202)
                      +-+|..=++.++-.+..+.++|.++|-+||.+     + .   ..|.+..+.    ..+..+...+              
T Consensus        63 ~~~v~~~Ga~d~~~A~~~~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~  142 (418)
T d1f61a_          63 LEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTS  142 (418)
T ss_dssp             SSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             CCCEEecccCCHHHHHHHHHhCCCEEEechHhhhcccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34666667789999999999999999998731     0 1   112222111    1223332211              


Q ss_pred             --CCCcEEEEec--CCCCHHHHHH----HHHhCCCEEEEc
Q psy16780        117 --GHKVDVYLDG--GVRYGTDVFK----ALALGAKMVFVG  148 (202)
Q Consensus       117 --~~~ipiia~G--GI~~~~D~~k----al~~GAd~V~ig  148 (202)
                        ...+|||+++  |..+...+.+    ...+||.+|.+=
T Consensus       143 ~~~~~~PIIaDaDtGfG~~~nv~rtvk~~i~AGaAgihiE  182 (418)
T d1f61a_         143 VENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWE  182 (418)
T ss_dssp             CSCSSCCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             cccccCCeEEecccccccHHHHHHHHHHHHHhCCcEEEEe
Confidence              1248999976  5566655553    334799999874

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Muconate-lactonizing enzyme
species: Pseudomonas putida [TaxId: 303]

Probab=82.45  E-value=3.2  Score=31.10  Aligned_cols=92  Identities=11%  Similarity=0.045  Sum_probs=62.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +.+...+.++++|+.+  ++.+.+-..  .+.++    ++.+.+.|+..+.=   +     ..+.+.+.+.++++..  +
T Consensus        44 ~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe---P-----~~~~d~~~~~~L~~~~--~  113 (242)
T d1muca1          44 PVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGIDLIEQ---P-----ISRINRGGQVRLNQRT--P  113 (242)
T ss_dssp             CHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHHTTCCCEEC---C-----BCTTCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHHHHhhhhhHHHhhc---c-----hhhhhhhhhhhhhhhh--h
Confidence            3455566788888876  455555432  34444    45566666555421   0     0122466778887776  7


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGR  149 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~  149 (202)
                      +||.+...+.+..|+.+++..| +|.+++--
T Consensus       114 ~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~  144 (242)
T d1muca1         114 APIMADESIESVEDAFSLAADGAASIFALKI  144 (242)
T ss_dssp             SCEEESTTCSSHHHHHHHHHHTCCSEEEECH
T ss_pred             heeecccccccccchhhhhhccccccccccc
Confidence            9999999999999999999988 78888854

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=82.31  E-value=5.2  Score=31.46  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             cCHHHHHHHHHcCCcEEEeec-cCcCCCCCccchHHHHHHH---HHHhC-CC-cEEEEecCCCCHHHHHHHHHhCCCEEE
Q psy16780         73 LTAEDAKIGVEMGASAIMVSN-HGGRQLDYVPASIEALPEI---AKAVG-HK-VDVYLDGGVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus        73 ~~~~~a~~l~~aG~d~I~v~~-~gg~~~~~~~~~~~~l~~i---~~~~~-~~-ipiia~GGI~~~~D~~kal~~GAd~V~  146 (202)
                      .++..++.+..+|.|+|.++. |+       +.+.+.+..+   .+... .. .|++=..+ .+...+.++|.+||++|+
T Consensus        50 ~s~~~~e~~a~~g~D~v~iD~EHg-------~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~-~~~~~I~~~LD~Ga~GIi  121 (299)
T d1izca_          50 PSTFVTKVLAATKPDFVWIDVEHG-------MFNRLELHDAIHAAQHHSEGRSLVIVRVPK-HDEVSLSTALDAGAAGIV  121 (299)
T ss_dssp             CCHHHHHHHHHTCCSEEEEETTTS-------CCCHHHHHHHHHHHHHHTTTCSEEEEECCT-TCHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHcCCCCEEEEcCCCC-------CCCHHHHHHHHHHHHHhCCCCCCeEEeCCC-CChHHHHHHHHhCcCeee
Confidence            688999999999999999987 33       2233332222   22222 22 34443433 578889999999999999


Q ss_pred             Ec
Q psy16780        147 VG  148 (202)
Q Consensus       147 ig  148 (202)
                      +-
T Consensus       122 vP  123 (299)
T d1izca_         122 IP  123 (299)
T ss_dssp             ET
T ss_pred             cc
Confidence            84

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=81.97  E-value=8.2  Score=28.76  Aligned_cols=94  Identities=10%  Similarity=-0.017  Sum_probs=63.1

Q ss_pred             CccccHHHHHHHHHhc--CCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780         48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK  119 (202)
Q Consensus        48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~  119 (202)
                      +++...+.|+.+|+.+  +.++.+=.-  .+.++    ++.+.+.+...+.=        --.+.+++.+.++++.+  +
T Consensus        44 ~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~  113 (244)
T d2chra1          44 SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQ--------PVGRENTQALRRLSDNN--R  113 (244)
T ss_dssp             CHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEC--------CSCSSCHHHHHHHHHHC--S
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHHHHHhhhhHHHHhh--------hhhhccchhhhhhccce--e
Confidence            4555567888888887  455544322  24433    34555566554431        00122567788888877  8


Q ss_pred             cEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHH
Q psy16780        120 VDVYLDGGVRYGTDVFKALALG-AKMVFVGRPA  151 (202)
Q Consensus       120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~  151 (202)
                      +||++.-.+.+..++.+++..| +|.|++--..
T Consensus       114 ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~  146 (244)
T d2chra1         114 VAIMADESLSTLASAFDLARDRSVDVFSLKLCN  146 (244)
T ss_dssp             SEEEESSSCCSHHHHHHHHTTTCCSEECCCHHH
T ss_pred             eeeeecccccccchhhhhhhcceeEEEeecccc
Confidence            9999999999999999999987 7899987644

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.83  E-value=0.71  Score=36.48  Aligned_cols=42  Identities=29%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             cHHHHHHHHHhc-CCCEEEE-eccCHHHHHHHHHcCCcEEEeec
Q psy16780         52 NWSDVTWLKTIT-KLPIVLK-GILTAEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        52 ~~~~i~~i~~~~-~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~   93 (202)
                      ..+.++++++.+ ++||+.= ++.+.+++...+.+|||+|.+..
T Consensus       242 al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~t  285 (312)
T d1gtea2         242 ALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCS  285 (312)
T ss_dssp             HHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             hHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECH
Confidence            467888898887 5898744 46899999999999999999954

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.76  E-value=5.3  Score=30.58  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=57.8

Q ss_pred             hhhccCccccHHHHHHHHH---hcCCCEEEEec-----cC---HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780         43 ITSQLDETINWSDVTWLKT---ITKLPIVLKGI-----LT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE  111 (202)
Q Consensus        43 ~~~~~d~~~~~~~i~~i~~---~~~~Pv~vK~~-----~~---~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~  111 (202)
                      -++.++++...+.++.+|+   ..+.|+.+-.-     ++   .++.+.+.+.|+|+|.+|---      ...+...+++
T Consensus        34 N~SHg~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~~~vD~ialSFVr------~~~Dv~~~r~  107 (246)
T d1e0ta2          34 NFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCEQGVDFVAASFIR------KRSDVIEIRE  107 (246)
T ss_dssp             ETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHHHTCSEEEESSCC------SHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHHcCCCEEEEcCCC------CHHHHHHHHH
Confidence            3456677766666666655   45667665432     33   466778889999999886410      0123333333


Q ss_pred             HHHHh-CCCcEEEE----ecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780        112 IAKAV-GHKVDVYL----DGGVRYGTDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       112 i~~~~-~~~ipiia----~GGI~~~~D~~kal~~GAd~V~ig~~~l  152 (202)
                      +.+.. ..+++||+    --|+.+-+++.    .-+|+||++|.=|
T Consensus       108 ~l~~~~~~~~~iiaKIE~~~al~nldeIi----~~sDgImIaRGDL  149 (246)
T d1e0ta2         108 HLKAHGGENIHIISKIENQEGLNNFDEIL----EASDGIMVARGDL  149 (246)
T ss_dssp             HHHTTTCTTCEEEEEECSHHHHHTHHHHH----HHSSEEEEEHHHH
T ss_pred             HHHHhCCCCceEEEEecchhhhhchHHHH----hhcceEEEEccch
Confidence            32222 23578888    22334444443    3479999999765

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=81.72  E-value=1.1  Score=33.82  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             HHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHH
Q psy16780         56 VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF  135 (202)
Q Consensus        56 i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~  135 (202)
                      +..+.+..++|++|=  .+.   +.+.+.|+|+|.+....        .+   ..++++..+ +. +++ +..++.+++.
T Consensus        69 l~~lc~~~~~~liIn--d~~---~lA~~~~adGvHl~~~d--------~~---~~~~r~~~~-~~-iig-~S~h~~~e~~  129 (226)
T d2tpsa_          69 AQAACREAGVPFIVN--DDV---ELALNLKADGIHIGQED--------AN---AKEVRAAIG-DM-ILG-VSAHTMSEVK  129 (226)
T ss_dssp             HHHHHHHHTCCEEEE--SCH---HHHHHHTCSEEEECTTS--------SC---HHHHHHHHT-TS-EEE-EEECSHHHHH
T ss_pred             HHHHHHHhCCeEEEc--CCH---HHHhhccCCEEEecccc--------ch---hhhhhhccc-ce-eee-eeccchHHHH
Confidence            344444568998863  334   44555699999884321        11   123344443 33 332 3367999999


Q ss_pred             HHHHhCCCEEEEcHHH
Q psy16780        136 KALALGAKMVFVGRPA  151 (202)
Q Consensus       136 kal~~GAd~V~ig~~~  151 (202)
                      ++...|||.|.+|.-|
T Consensus       130 ~a~~~g~DYi~~gpvf  145 (226)
T d2tpsa_         130 QAEEDGADYVGLGPIY  145 (226)
T ss_dssp             HHHHHTCSEEEECCSS
T ss_pred             HHHhCcCCeEEEeccc
Confidence            9999999999999643

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.64  E-value=5.4  Score=26.47  Aligned_cols=91  Identities=9%  Similarity=-0.069  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHH-HHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDAK-IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~-~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+.++.+-+..+.-|.  ...+.+.+. .+.+.-.|.|.++-.-.     +..-++.+.++++. ..++|||...+-.+.
T Consensus        16 ~~~l~~~L~~~g~~v~--~a~~~~~a~~~l~~~~~dlii~D~~mp-----~~~G~el~~~l~~~-~~~~piI~~t~~~~~   87 (123)
T d1krwa_          16 RWVLERALAGAGLTCT--TFENGNEVLAALASKTPDVLLSDIRMP-----GMDGLALLKQIKQR-HPMLPVIIMTAHSDL   87 (123)
T ss_dssp             HHHHHHHHHHTTCEEE--EESSSHHHHHHHTTCCCSEEEECCSSS-----SSTTHHHHHHHHHH-SSSCCEEESCCCSCH
T ss_pred             HHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEehhhcC-----CchHHHHHHHHHHh-CCCCeEEEEecCCCH
Confidence            4455555555565443  345555554 44456677777754210     11234567777654 457999999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPAL  152 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~l  152 (202)
                      ++..+++.+||+.+ +..||-
T Consensus        88 ~~~~~a~~~Ga~dy-l~KP~~  107 (123)
T d1krwa_          88 DAAVSAYQQGAFDY-LPKPFD  107 (123)
T ss_dssp             HHHHHHHHHTEEEE-CSSCCH
T ss_pred             HHHHHHHHcCCCeE-EeCcCC
Confidence            99999999999765 455653

>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain
species: Clostridium sticklandii [TaxId: 1511]

Probab=81.10  E-value=2.1  Score=30.74  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHH----HHHHHH-hCCCcEEEEecCCCCHHHHHHHHHhCCCEEE
Q psy16780         75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEAL----PEIAKA-VGHKVDVYLDGGVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus        75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l----~~i~~~-~~~~ipiia~GGI~~~~D~~kal~~GAd~V~  146 (202)
                      .+.++.+.+.++|.|-+|..-.++    ......+    ..+++. +.+++||++-|+..+.+.+   -.+|||++.
T Consensus        69 e~~v~~a~e~~~d~VglS~l~t~~----~~h~~~~~~~i~~l~~~g~~d~v~vivGG~~~~~~~a---~~~GaD~~f  138 (160)
T d1xrsb1          69 EDFIKKAVELEADVLLVSQTVTQK----NVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIA---KELGYDAGF  138 (160)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCCTT----SHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHH---HTTTCSEEE
T ss_pred             HHHHHHHHhcCCCEEEEeeccccc----chhHHHHHHHHHHHHHcCCCCceEEEEcCCCCCHHHH---HHcCCCEEc
Confidence            455788899999999998742211    1122223    333322 1235888887878776543   367999885

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.54  E-value=5.9  Score=26.22  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHH-HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780         53 WSDVTWLKTITKLPIVLKGILTAEDA-KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG  131 (202)
Q Consensus        53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a-~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~  131 (202)
                      .+.+..+-+..+.-|  ....+.+++ +.+.+.-.|.|.++-.-. .    ....+.+..+++.  .++|||...|-.+.
T Consensus        15 ~~~l~~~L~~~g~~v--~~a~~~~~al~~l~~~~~dlii~D~~mp-~----~~G~~~~~~~r~~--~~~pii~lt~~~~~   85 (121)
T d1xhfa1          15 RNTLKSIFEAEGYDV--FEATDGAEMHQILSEYDINLVIMDINLP-G----KNGLLLARELREQ--ANVALMFLTGRDNE   85 (121)
T ss_dssp             HHHHHHHHHTTTCEE--EEESSHHHHHHHHHHSCCSEEEECSSCS-S----SCHHHHHHHHHHH--CCCEEEEEESCCSH
T ss_pred             HHHHHHHHHHCCCEE--EEECChHHHHHHHHhcCCCEEEeecccC-C----ccCcHHHHHHHhc--CCCcEEEEECCCCH
Confidence            445555555556543  345676666 455667788888764210 1    1124556666554  37999999999999


Q ss_pred             HHHHHHHHhCCCEEEEcHHH
Q psy16780        132 TDVFKALALGAKMVFVGRPA  151 (202)
Q Consensus       132 ~D~~kal~~GAd~V~ig~~~  151 (202)
                      .+..+++.+||+.+.. .||
T Consensus        86 ~~~~~a~~~Ga~dyl~-KP~  104 (121)
T d1xhfa1          86 VDKILGLEIGADDYIT-KPF  104 (121)
T ss_dssp             HHHHHHHHHTCSEEEE-SSC
T ss_pred             HHHHHHHHcCCCEEEe-CCC
Confidence            9999999999998764 354

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.52  E-value=7.2  Score=30.04  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=39.6

Q ss_pred             HHHHHHcCCcEEEeeccCcCCCCCccc---hHHHHHHHHHHhC-CCcEEEEecCCCCHHHHHHHHHhCCCEEE
Q psy16780         78 AKIGVEMGASAIMVSNHGGRQLDYVPA---SIEALPEIAKAVG-HKVDVYLDGGVRYGTDVFKALALGAKMVF  146 (202)
Q Consensus        78 a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~l~~i~~~~~-~~ipiia~GGI~~~~D~~kal~~GAd~V~  146 (202)
                      ++.+.+.|||.|++++-.-+......+   .++-+..+.+.+. .+++|=.+.  +.++-+.+|+..||+.+=
T Consensus        32 ~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT--~~~eVa~~al~~Ga~iIN  102 (264)
T d1ad1a_          32 VKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDT--FRSEVAEACLKLGVDIIN  102 (264)
T ss_dssp             HHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEEC--SCHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchhh--hhHHHHHHHHhcCCcEee
Confidence            577899999999998742221111111   2222222233332 245444443  788888889999998887

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.41  E-value=5.2  Score=30.57  Aligned_cols=39  Identities=21%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             HHHHHHHhc--CCCEEEEec-cC----HHHHHHHHHcCCcEEEeec
Q psy16780         55 DVTWLKTIT--KLPIVLKGI-LT----AEDAKIGVEMGASAIMVSN   93 (202)
Q Consensus        55 ~i~~i~~~~--~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~   93 (202)
                      +++...+..  ++||++... .+    .+.++.+.++|+|++.+..
T Consensus        59 ~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~p  104 (295)
T d1o5ka_          59 LVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVT  104 (295)
T ss_dssp             HHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeC
Confidence            444444443  689999865 23    4667889999999999864