Psyllid ID: psy16785

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640--
MVVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTKAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEITRVISNSLISGLSPSLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTIVRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHKIKVVAEHISTEDKPEDKANLNEPSPCETSDEKDIVKGNVVDYEATKQTRTESPSEEQKSKQLIRQDRITEETDESRPFESAECSRTSQPEVENHISNTDTIETAYSEMSEPIEELHTERLSTETLQREPITSVPTATSNTTLPSEPSVSRTRTPEEILEARNARLKRLEDQCKNLFHKMSLTSQRSDTLSERLEELHDYYGTSNERHSPRRHREGSQDSDDTRLRSPENEPLSGVSANVPDSQENSQESDDTRRRSAETNESHSGVSGNVSDLQDRIDTRLKSSPEINECTSAVSAVSEESSGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQDRIDTRLKSSPGINECTSAVSAVSEESSGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQYDGGRSTSESGISTDTEDDNVEIVETNDESEDDKSEVVETQSEHDVPHTNSVMSIEEDDQDEVEELESETNVSAINNEQEVERTEVTDNTSAVIPSRETIENEAVPVSVSPQEDIVDTITTSRTDHIESHQEINSSRETKEIPGTSDANVNYSQQFLNNKITIKTIGGKIKVVAEHISTEDKPEDKANLNEPSHCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRPLAVKEEEEANE
ccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHccccccccHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHccccccccccccHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHcccHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHcccccccccccHHHHHHcc
cEEEHHHHHHHHHHHEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccEEEEEEccccccEEEccccccccccccHHcccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHccHHHHcHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHccccccccHHHHcccccccccccccccccHHHccccccccccccccccHcHHHHHHHccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccHHHccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHccccHHHcccccccccccHHHHHHccccHHHHHHHHHHHcHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHcccccccccccccccHcccHHcccccccHHHHHHcccccHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccEccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccccccHHccccHccccccccccccccccccccccccccccccccccccccccccccccHcHccccccHHHcccccccccccccHHccccccccccHHHHHHHHHcccccEEEcccccccEEEccccccccEEEEcccccEEEEEEEEEEcccccHHcccccccccccHHHEHHHccccccccccHHHHHHHHHHHcccHEccHccEEEEEEcccccccccEEEEccccccccccccccccccccccEHEEHccHHEHccccccccccHcHHHccccccccccEEccccHHHHHHHEEEHcccccHHHHHcccccccccEcHHHHccc
MVVFTILSMIVFKNFIltigspltsstsmvvFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLkqlenyetpmsSAMVEAVESnqtstkavesnqtstskdsaniqldhaetntneespadqdetnstttldkshIQKEITRVISNSlisglspslgwlgtrgiLTVTWGYLARLRLQIKCLktshpllrdhtctivrahlspvhkHTLYLKrlgwlgtrgiLTVTWGYLARLRLQIKCLktshpllrdhKIKVVAEhistedkpedkanlnepspcetsdekdivkgnvvdyeatkqtrtespseeqKSKQLIRQDriteetdesrpfesaecsrtsqpevenhisnTDTIETAYSEMSEPIEELHTErlstetlqrepitsvptatsnttlpsepsvsrtrtpEEILEARNARLKRLEDQCKNLFhkmsltsqRSDTLSERLEELHDyygtsnerhsprrhregsqdsddtrlrspeneplsgvsanvpdsqensqesddtrrrsaetneshsgvsgnvsdlqDRIDtrlksspeinecTSAVSAVSeessglrsvdairpvlnhdemtrrnveaesraDAVVQDRIdtrlksspginectSAVSAVSeessglrsvdairpvlnhdemtrrnveaesRADAVvqgqekprpltngvclktcvpmhstppesnilattrSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLkqlenyetpmsSAMVEAVEsnqtstskdsaniqldhaetntneespadqdetnstttldkSHIQKEIANNLPKVWRILIELLNTHQeqyenndvnenFESCYKNIktntgkthqvISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLqydggrstsesgistdteddnveivetndeseddksEVVETqsehdvphtnsvmsieeddQDEVEELESETnvsainneqevertevtdntsavipsretieneavpvsvspqedivdtittsrtdhieshqeinssretkeipgtsdanvNYSQQFLNNKITIKTIGGKIKVVAEHistedkpedkanlnepshcpfwyfwqekgkekykpvTNRQIKNFWKIFGKFKTVNKNFMRITLcasfpefqggevsvdetsnlqkseaqipifdkgigthyIKENMVSYqlgfsfrkaprltkvveqgcpiadrfqidrdqHTQQCLNLVISsykpdysklvshwncrplavkeEEEANE
MVVFTILSMIVFKNFILTigspltsstsmvVFKVSDLKTRLKDvekkllespeeikieyeKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLaiqndkqlkQLENYETPMSSAMVEAVESNQTSTKavesnqtstskdsaniQLDHaetntneespadqdetnstttldkshiQKEITRVISNSLISglspslgwlgTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTIvrahlspvhKHTLYlkrlgwlgtRGILTVTWGYLARLRLQIKCLktshpllrdhKIKVVAEHistedkpedkanlnepspcetsdekdivkgnVVDYeatkqtrtespseeqkskqlirqdriteetdesrpfesaecsrtsqpevenhisntDTIETAYSEMSEPIEELHTERlstetlqrepitsvptatsnttlpsepsvsrtrtpeEILEARNARLKRLEDQCKNlfhkmsltsqrsdTLSERLEELHDYygtsnerhsprrhregsqdsddtrlrSPENEplsgvsanvpdsqensqesddTRRRsaetneshsgvsgnvsdlqdRIDTRlksspeinectsavsavseessglrsvdairpvlnhdemtrrnveaesradavvqdridtrlksspginectSAVSavseessglrsvdairpvlnhdemtrrnveaesradavvqgqekprpltnGVCLKTCVPMHSTppesnilattrSVILPLVSDLKTRLKDVEkkllespeeikieyeKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLaiqndkqlkQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHaetntneespadqdetnstttldkshiqKEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLvkekneqneldykvLRKEFALrrlqydggrstsesgistdteddnveivetndeseddksevvetqsehdvphtnsvmsiEEDDQDEVEELESetnvsainneqevertevtdntsavipsretieneavpvsvspqedIVDTITTsrtdhieshqeinssretkeipgtsdANVNYSQQFLNNKITIKTIGGKIKVVAEHIstedkpedkanlnePSHCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRPLAVkeeeeane
MVVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIekelaknalleaklkeIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTKAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEITRVISNSLISGLSPSLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTIVRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHKIKVVAEHISTEDKPEDKANLNEPSPCETSDEKDIVKGNVVDYEATKQTRTESPSEEQKSKQLIRQDRITEETDESRPFESAECSRTSQPEVENHISNTDTIETAYSEMSEPIEELHTERLSTETLQREPITSVPTATSNTTLPSEPSVSRTRTPEEILEARNARLKRLEDQCKNLFHKMSLTSQRSDTLSERLEELHDYYGTSNERHSPRRHREGSQDSDDTRLRSPENEPLSGVSANVPDSQENSQESDDTRRRSAETNESHSGVSGNVSDLQDRIDTRLKSSPEINECTsavsavseessGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQDRIDTRLKSSPGINECTsavsavseessGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIekelaknalleaklkeIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQYDGGRSTSESGISTDTEDDNVEIVETNdeseddksevveTQSEHDVPHTNSVMSIeeddqdeveeleseTNVSAINNEQEVERTEVTDNTSAVIPSRETIENEAVPVSVSPQEDIVDTITTSRTDHIESHQEINSSRETKEIPGTSDANVNYSQQFLNNkitiktiggkikVVAEHISTEDKPEDKANLNEPSHCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRPLAVKEEEEANE
*VVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDV***********KIEYE*QMTNYKKLRELYE*********************ALL*************************************************LAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLA**********************************************************************************EITRVISNSLISGLSPSLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTIVRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHKIKVVAE**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TNGVCLKTCVPMH******NILATTRSVILPLVSDLKTRLKDV***********KIEYEKQMTNYKKLRELYE*********************ALL*************************************************LAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLA************************************************************************EIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQ*****************************************************************************************************************************************************VNYSQQFLNNKITIKTIGGKIKVVAEHI****************HCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEV************AQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRPLA*********
*VVFTILSMIVFKNFILTIGSPL*********************************IEYEKQMTNYK*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************CPFWYFWQEK*******VTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEVSV*********EAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRP***********
MVVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSA**************************ANIQLDHAE***********************HIQKEITRVISNSLISGLSPSLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTIVRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHKIKVVAEHI**********************EKDIVKGNVVDYEAT**********************************************ENHISNTDTIETAYSEMSEPIEELHTERLSTETLQREPITSVP*******************PEEILEARNARLKRLEDQCKNLFHKMSLTSQRSDTLSERLEELHDYYGT*******************************************************************VSDLQDRIDTRLKSSPEINE****************SVDAIRPVLNHDEMTRRNVEAESRADAVVQDRIDTRLKSSPGINECT**************SVDAIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMV*************SANIQLDHAE*********************KSHIQKEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQY**************TEDDNVEIV***********************HTNSVMSI****************VSAINNEQ***********SAVIPSRETIENEAVPVSVSPQEDIVDTITTSR****************KEIPGTSDANVNYSQQFLNNKITIKTIGGKIKVVAEHISTEDKPEDKANLNEPSHCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRPLAV********
MVVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTKAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEITRVISNSLISGLSPSLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTIVRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHK*************************************************************************************************************************************************************L*ARNARLKRLEDQCKNLFHKMSLTS***************************************************************************************************************************************************************************VSAVSEESS*LR*************************************LTNGVCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETL**************************************************************TTTLDKSHIQKEIANNLPKVWRILIELLNTHQEQY**************NI*TNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALR*******************************************************************************************************************EDIVDTITTSRTDHIESHQEINSSRETKEIPGTSDANVNYSQQFLNNKITIKTIGGKIKVVAEHISTEDKPEDKANLNEPSHCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRPLAVKEE*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLxxxxxxxxxxxxxxxxxxxxxKQLENYETPMSSAMVEAVESNQTSTKAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEITRVISNSLISGLSPSLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTIVRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHKIKVVAEHISTEDKPEDKANLNEPSPCETSDEKDIVKGNVVDYEATKQTRTESPSEEQKSKQLIRQDRITEETDESRPFESAECSRTSQPEVENHISNTDTIETAYSEMSEPIEELHTERLSTETLQREPITSVPTATSNTTLPSEPSVSRTRTPEEIxxxxxxxxxxxxxxxxxxxxxMSLTSQRSDTLSERLEELHDYYGTSNERHSPRRHREGSQDSDDTRLRSPENEPLSGVSANVPDSQENSQESDDTRRRSAETNESHSGVSGNVSDLQDRIDTRLKSSPEINECTSAVSAVSEESSGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQDRIDTRLKSSPGINECTSAVSAVSEESSGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLxxxxxxxxxxxxxxxxxxxxxKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQYDGGRSTSESGISTDTEDDNVEIVETNDESEDDKSEVVETQSEHDVPHTNSVMSIEEDDQDEVEELESETNVSAINNEQEVERTEVTDNTSAVIPSRETIENEAVPVSVSPQEDIVDTITTSRTDHIESHQEINSSRETKEIPGTSDANVNYSQQFLNNKITIKTIGGKIKVVAEHISTEDKPEDKANLNEPSHCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSYKPDYSKLVSHWNCRPLAVKEEEEANE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1642
3504209251552 PREDICTED: hypothetical protein LOC10074 0.236 0.25 0.338 9e-59
3504209221452 PREDICTED: hypothetical protein LOC10074 0.236 0.267 0.338 2e-58
3800208581199 PREDICTED: uncharacterized protein LOC10 0.229 0.314 0.343 2e-58
3407132101486 PREDICTED: hypothetical protein LOC10064 0.236 0.261 0.338 6e-58
2420073381076 protein C10orf118, putative [Pediculus h 0.261 0.399 0.343 1e-55
3320205021507 hypothetical protein G5I_10836 [Acromyrm 0.248 0.270 0.333 4e-55
91080025634 PREDICTED: similar to Ofd1 protein, puta 0.235 0.608 0.349 2e-52
307208636445 hypothetical protein EAI_07848 [Harpegna 0.226 0.835 0.340 4e-50
1571329041159 Ofd1 protein, putative [Aedes aegypti] g 0.236 0.335 0.334 7e-49
357622131974 putative Ofd1 protein [Danaus plexippus] 0.229 0.387 0.337 1e-47
>gi|350420925|ref|XP_003492678.1| PREDICTED: hypothetical protein LOC100745911 isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
 Score =  236 bits (602), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 165/488 (33%), Positives = 254/488 (52%), Gaps = 100/488 (20%)

Query: 851  VSDLKTRLKDV-----EKKLLESPEEIKIEYEKQMTNYKKLRELYEQR---------AAA 896
             +DLK  L ++     ++  LE  +++ +E E+Q+ N   L+ LY +R          A 
Sbjct: 680  ANDLKDHLAEILLQLGDRSFLEQKDDVGLECERQLENINSLKSLYNERLKVLNELKETAV 739

Query: 897  AEL-EHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEIN 955
             EL E +  ++  L K   LE  LK+  E+I  Q                     D EI+
Sbjct: 740  RELAETRVRLDHSLKKCECLEEDLKKADEKIDTQ---------------------DTEIS 778

Query: 956  NLNENLTSSLAENHILNSQMTLVNNLFSNMLINPM---INLDMLIKLIQDNYLLIIDLIN 1012
            NL   L  + A+   L +QM+L+N+LF+ ML+      ++LD L +L+Q+N+ LI ++  
Sbjct: 779  NLESQLGLTKADCRDLQNQMSLINSLFTQMLLGATSADMDLDRLTQLLQENHDLICNMAR 838

Query: 1013 NH--EINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSK 1070
                E      LL+DL                               +E VE ++ S  +
Sbjct: 839  EEGTEAAALPKLLLDL-------------------------------IEQVEGSKPSQKR 867

Query: 1071 DSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEIANNLPKVWRILIELLNTHQE 1130
                      E  T  E+   +D+            Q++IA+NLPKVWR+L+ELL+ H E
Sbjct: 868  ADG-------ENGTEVEAEKKEDDLQ----------QEDIAHNLPKVWRVLLELLSCHAE 910

Query: 1131 QYENNDVNENFES--CYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTL 1188
               +     + +   CYK++ T  G    VISVS+T+IRLK LILEK HL  ++ ++K L
Sbjct: 911  CAPSASAASSSDPNICYKSVDTPAG-PRLVISVSKTYIRLKELILEKKHLEKEMNRMKQL 969

Query: 1189 NNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDL 1248
            N HLE +L   E+RL+TV+ EL KTW +V++++ QH QL+THEKIL+YEL+ KR ++ +L
Sbjct: 970  NVHLECKLGEQEKRLSTVSAELSKTWTIVDRMQAQHHQLHTHEKILRYELQQKRKMLQEL 1029

Query: 1249 KIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRR--LQYDGGRSTSESGIS------T 1300
            K +LEY REKW+  ++KN   EL+++ LR+EFA R+    +D   +++ESG S      T
Sbjct: 1030 KQELEYCREKWESARQKNTNTELEWRSLRREFAARKALASHDSFNNSAESGFSDERGDDT 1089

Query: 1301 DTEDDNVE 1308
            D ED+ VE
Sbjct: 1090 DEEDNAVE 1097

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350420922|ref|XP_003492677.1| PREDICTED: hypothetical protein LOC100745911 isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|380020858|ref|XP_003694294.1| PREDICTED: uncharacterized protein LOC100868879 [Apis florea] Back     alignment and taxonomy information
>gi|340713210|ref|XP_003395139.1| PREDICTED: hypothetical protein LOC100649207 [Bombus terrestris] Back     alignment and taxonomy information
>gi|242007338|ref|XP_002424498.1| protein C10orf118, putative [Pediculus humanus corporis] gi|212507916|gb|EEB11760.1| protein C10orf118, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332020502|gb|EGI60917.1| hypothetical protein G5I_10836 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|91080025|ref|XP_972114.1| PREDICTED: similar to Ofd1 protein, putative [Tribolium castaneum] gi|270003227|gb|EEZ99674.1| hypothetical protein TcasGA2_TC002431 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307208636|gb|EFN85926.1| hypothetical protein EAI_07848 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|157132904|ref|XP_001662695.1| Ofd1 protein, putative [Aedes aegypti] gi|108871041|gb|EAT35266.1| AAEL012556-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|357622131|gb|EHJ73725.1| putative Ofd1 protein [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1642
DICTYBASE|DDB_G02905031492 DDB_G0290503 [Dictyostelium di 0.517 0.569 0.198 5.6e-22
DICTYBASE|DDB_G0293544 2110 cepK "centrosomal protein 248 0.247 0.192 0.234 1.7e-11
SGD|S0000022161790 USO1 "Protein involved in the 0.326 0.299 0.234 7.2e-13
UNIPROTKB|H0YJ971695 TRIP11 "Thyroid receptor-inter 0.339 0.328 0.229 2.2e-12
SGD|S000001803 1875 MLP1 "Myosin-like protein asso 0.504 0.442 0.204 7e-12
UNIPROTKB|F1NNI6 3103 LOC100858793 "Uncharacterized 0.395 0.209 0.207 9.7e-12
SGD|S000003362816 YGR130C "Component of the eiso 0.096 0.193 0.311 1.3e-11
DICTYBASE|DDB_G0289185 1026 DDB_G0289185 [Dictyostelium di 0.298 0.477 0.207 6.3e-06
DICTYBASE|DDB_G0272368 1781 ndm "macropinocytosis suppress 0.514 0.474 0.178 5.4e-09
UNIPROTKB|F1PU601372 ROCK1 "Uncharacterized protein 0.233 0.279 0.221 1.5e-11
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 226 (84.6 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
 Identities = 185/934 (19%), Positives = 408/934 (43%)

Query:   397 RLQIKCLKTSHPLLRD-HKIKVVAEHISTEDKP--EDKANLNEP-SPCETSDEK--DIVK 450
             +LQ+K    S+ LL   + I  ++  +  ++    E    LNE  +   + D +   +++
Sbjct:   426 QLQLKLNDISNELLEKLNDINQLSNKLQDKENQILEINNKLNEKENQLISKDNQLNQLIE 485

Query:   451 GNVVDYEATKQTRTESPSE-EQKSKQLIRQDRITEETDESRPFESAECSRTSQPEVENHI 509
              N    +  K    +   E ++K ++L+    +  E  +S   E+   ++ ++  +EN+ 
Sbjct:   486 NNESSSDELKLKLNQLSDELQEKDEKLLNNQSVINEL-QSNLNENQ--NKINEL-IENNQ 541

Query:   510 SNTDTIETAYSEMSEPIEELHTERLSTET--LQR-EPITSVPTATSNTTLPSEPSVSRTR 566
             S++D ++   +++S+ ++E   +  S E+  ++R E I  +    +         V    
Sbjct:   542 SSSDELKLKLNQLSDKLQEKDEKLKSLESSIIERDEKIDQLQDNLNEKQDKINELVENNE 601

Query:   567 TPEEILEARNARLK-RLEDQCKNLFHKMSLTSQRSDTLSERLEELHDYYGTSNERHSPRR 625
             +  + L+++  +L  +L+++ + L +  S+ ++    L+E   ++++    +N+  S   
Sbjct:   602 SSSDELQSKLIQLSDQLQEKDEKLLNNQSIINELQSNLNENQNKINELI-ENNQSSSDEL 660

Query:   626 HREGSQDSDDTRLRSPENEPLSGVSANVPDSQENS----QESDDT-RRRSAETNESHSGV 680
             + +  + SD+ +    +NE +  +  ++ ++Q+      Q +  T     ++ NE    +
Sbjct:   661 NSKLIKLSDELK---DKNENVRSLETSIIENQDKLDQLIQSNQVTVNELQSKLNEKEINI 717

Query:   681 SGNVSDLQDRIDT-RLKSSPEINECTXXXXXXXXXXXGLRS--------VDAIRPVLNHD 731
             +  + + Q  +D  + K + + NE              L+S        +  ++  LN  
Sbjct:   718 NQLIENNQSSLDELQSKLNEKQNEINQLIENNQSSSDELQSKLNEKHQEISELQSKLN-- 775

Query:   732 EMTRRNVEAESRADA-VVQ--DRI---DTRLKSSPGINECTXXXXXXXXXXXGLRSVDAI 785
             E+   N  +     + ++Q  D +   D +LKS   I                  S+D +
Sbjct:   776 ELIENNESSSDELQSKLIQLSDELKEKDEKLKSLDSII-IENQEKLVQLTKSNQDSLDEL 834

Query:   786 RPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLKTCVPMHSTPPESNILATTRS 845
             +  LN ++    N   E+   +  + Q K     N + L     + +    S+ L +  +
Sbjct:   835 QSKLN-EKQNEINELIENNQSSSNELQSKLNEKQNEINLL----IENNQSSSDELQSKLN 889

Query:   846 VILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMI 905
                  +++L+++L + + K+ E  E  +   ++  +   KL +L +Q     E + K+  
Sbjct:   890 EKHQEINELQSKLNEKQNKINELVENNESSSDELQS---KLIQLSDQ-LQEKENQLKSFE 945

Query:   906 XXXXXXXXXXXXXXXXIQEEIQAQLEKYKENKKQIL-EMEKNIQLKDDEINNLNENLTSS 964
                             + E+ Q ++++  EN +  L E++ N+  K +EIN L EN  SS
Sbjct:   946 SSIIERDEKLNQLQSKLNEK-QNEIDQITENNQSSLDELQSNLNEKQNEINQLIENNQSS 1004

Query:   965 LAE-NHILNSQMTLVNNLFSNMLINPMINL-DMLIKLIQDNYLLIIDLIN--NHEINDTV 1020
             L E    LN ++  +N    +  IN +I   + L K  Q  +  +   +   N++I D  
Sbjct:  1005 LDELQSKLNEKLNEINE--KDNKINELIQTNESLSKDQQSKFENLEQELEEKNNKILDLN 1062

Query:  1021 SLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVE-SNQTSTSKDSANIQLDH 1079
             S ++D+  +  ++   + N  QLK +E  +  + +   + ++ +NQ +  +   NI  D+
Sbjct:  1063 SQIIDVNHQFSEKENEL-NQLQLKLIEK-DQEIENQNNKIIDINNQLNEKEKEININNDN 1120

Query:  1080 AETNTN-----EESPADQDETNSTTTLDKSHIQK--EIANNLPKVWRILIELLNTHQEQY 1132
                N       EE      +  +   L+K  + +  +  N L +  +++ E L+  +EQ 
Sbjct:  1121 DNNNEENIQLIEELKEKLQDLENELNLEKDTVNEKNDDINELKEEIKLISEKLS-EKEQE 1179

Query:  1133 ENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKL-KTLNNH 1191
              N  +N+  ES   N + N  K   V S+++   RL +  L+ N   N++  L K   N 
Sbjct:  1180 LNEMINDYDESL--N-EINDQKD-LVKSLNE---RLTNAHLKINEKDNEIHSLSKEGFNE 1232

Query:  1192 LEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIIN-DLK- 1249
             ++ +LN    +L+     L +   +++ L+LQ ++ Y  E+     L  ++ +I+ DL  
Sbjct:  1233 IQSQLNLITNQLSEKDNLLIEKSQIISDLELQLRESYK-ERSSSSSLHQQQQMISPDLSN 1291

Query:  1250 IDLEYVREKWDLV---KEKNEQNELDYKVLRKEF 1280
              + E + EK +++   KEKN+Q E   + L ++F
Sbjct:  1292 SNDELIVEKEEIINELKEKNQQLEQQLQDLCQQF 1325
GO:0005543 "phospholipid binding" evidence=IEA
DICTYBASE|DDB_G0293544 cepK "centrosomal protein 248 kDa" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|H0YJ97 TRIP11 "Thyroid receptor-interacting protein 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
SGD|S000001803 MLP1 "Myosin-like protein associated with the nuclear envelope" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNI6 LOC100858793 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000003362 YGR130C "Component of the eisosome with unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289185 DDB_G0289185 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272368 ndm "macropinocytosis suppressor Ndm" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU60 ROCK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1642
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-04
pfam03961450 pfam03961, DUF342, Protein of unknown function (DU 8e-04
pfam03961450 pfam03961, DUF342, Protein of unknown function (DU 8e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.003
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.003
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 50.5 bits (121), Expect = 9e-06
 Identities = 78/392 (19%), Positives = 148/392 (37%), Gaps = 59/392 (15%)

Query: 851  VSDLKTRLKDVEKKL------LESPEEIKIEYEKQMTNYKKLRELYEQRAAAAE-LEHKT 903
            VS  K R ++ E+KL      LE  E++  E EKQ      L +L  Q   A    E K 
Sbjct: 167  VSKYKERKEEAERKLERTEENLERLEDLLEELEKQ------LEKLERQAEKAERYQELKA 220

Query: 904  MIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963
              E    + ALL AKLKE+++E++   E+    ++++ E+++ ++  + EI  L   L  
Sbjct: 221  --ELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 964  SLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLL 1023
               E   L  ++  +              L+  I L+++             + +  + L
Sbjct: 279  LREELEELQEELLELKEEIE--------ELEGEISLLRE------------RLEELENEL 318

Query: 1024 VDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHAETN 1083
             +LE+++++    I+  K+  +LE  ET +        E  +     +     L      
Sbjct: 319  EELEERLEELKEKIEALKE--ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376

Query: 1084 TNEESPADQDETNSTTTL---DKSHIQKEIANNLPKVWRILIELLNTHQEQYENN----- 1135
              E    +  E  +       +   +++EI          L E L    E+ E+      
Sbjct: 377  LFEALREELAELEAELAEIRNELEELKREI--------ESLEERLERLSERLEDLKEELK 428

Query: 1136 DVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIR 1195
            ++    E     ++           + +   +L+ L      L  +LA+L+     LE  
Sbjct: 429  ELEAELEELQTELEEL------NEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482

Query: 1196 LNHSEQRLNTVTTELKKTWNVVNKLKLQHKQL 1227
            L+  E RL+ +  E + +  V   L+     L
Sbjct: 483  LSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342) Back     alignment and domain information
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342) Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1642
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.56
COG11961163 Smc Chromosome segregation ATPases [Cell division 95.32
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 95.17
PRK02224880 chromosome segregation protein; Provisional 94.89
TIGR006061311 rad50 rad50. This family is based on the phylogeno 94.82
KOG4643|consensus 1195 94.66
PRK10698222 phage shock protein PspA; Provisional 94.07
PRK09039343 hypothetical protein; Validated 93.98
PRK09039343 hypothetical protein; Validated 93.5
PF00038312 Filament: Intermediate filament protein; InterPro: 93.26
KOG0161|consensus 1930 93.03
TIGR02977219 phageshock_pspA phage shock protein A. Members of 93.01
PRK06569155 F0F1 ATP synthase subunit B'; Validated 92.77
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 91.31
PHA02562562 46 endonuclease subunit; Provisional 91.06
KOG1029|consensus1118 90.67
PRK048631486 mukB cell division protein MukB; Provisional 90.61
KOG4674|consensus1822 90.55
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 90.31
PRK04863 1486 mukB cell division protein MukB; Provisional 89.56
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 89.24
KOG1029|consensus1118 89.13
PRK03918880 chromosome segregation protein; Provisional 88.86
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 88.72
TIGR02977219 phageshock_pspA phage shock protein A. Members of 88.44
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 88.36
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 88.29
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 88.11
KOG0250|consensus1074 88.06
PF10174775 Cast: RIM-binding protein of the cytomatrix active 87.68
KOG0995|consensus581 87.57
PRK03918880 chromosome segregation protein; Provisional 87.57
PRK11637428 AmiB activator; Provisional 87.56
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.42
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 87.2
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 87.02
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 86.74
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 86.65
PRK11637428 AmiB activator; Provisional 86.54
PRK04778569 septation ring formation regulator EzrA; Provision 86.53
PRK112811113 hypothetical protein; Provisional 85.84
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 85.78
PRK05759156 F0F1 ATP synthase subunit B; Validated 85.49
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 85.28
PRK06231205 F0F1 ATP synthase subunit B; Validated 85.26
PF05911769 DUF869: Plant protein of unknown function (DUF869) 85.19
PRK10698222 phage shock protein PspA; Provisional 85.08
PRK09174204 F0F1 ATP synthase subunit B'; Validated 85.06
PHA02562562 46 endonuclease subunit; Provisional 84.6
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 84.44
PF00038312 Filament: Intermediate filament protein; InterPro: 83.83
PRK14472175 F0F1 ATP synthase subunit B; Provisional 82.83
PF05837106 CENP-H: Centromere protein H (CENP-H); InterPro: I 82.69
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 82.66
KOG0963|consensus629 82.04
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 81.98
PF05837106 CENP-H: Centromere protein H (CENP-H); InterPro: I 81.96
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 81.72
PF05911769 DUF869: Plant protein of unknown function (DUF869) 80.94
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 80.78
PF13166712 AAA_13: AAA domain 80.78
KOG4643|consensus1195 80.58
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 80.38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information 
Probab=95.56  E-value=8.9  Score=47.32  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785        850 LVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQ  929 (1642)
Q Consensus       850 Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae  929 (1642)
                      ...+....|..+...+. +..+...+-++|+......+.++++-..+...-....+..-..+-.-++.++.....++..-
T Consensus       171 ~~~~~~~~l~~~~~~l~-el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  249 (1164)
T TIGR02169       171 KKEKALEELEEVEENIE-RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASL  249 (1164)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555544442 34444456666666666666655544444222111111111111111223344444444444


Q ss_pred             HHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785        930 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTS  963 (1642)
Q Consensus       930 ~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~  963 (1642)
                      ..+...++.++..++.++..+..++..++..+..
T Consensus       250 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (1164)
T TIGR02169       250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKD  283 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444445555555555555555555555544444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4643|consensus Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PRK06569 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4674|consensus Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0250|consensus Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0995|consensus Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK05759 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK14472 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>KOG0963|consensus Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>KOG4643|consensus Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1642
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 79.5 bits (195), Expect = 8e-15
 Identities = 99/699 (14%), Positives = 193/699 (27%), Gaps = 234/699 (33%)

Query: 464  TESPSEEQKSKQLIR--QDRITEE------TDESRP-FESAECSR-TSQPEVENHI---- 509
             E+   + + K ++   +D   +        D  +      E        +  +      
Sbjct: 9    FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 510  -----SNTDTIETAYSEMSEPIEELHTERLSTETLQREPITSV------PTATSNTTLPS 558
                    + ++    E+     +     + TE  Q   +T +           N     
Sbjct: 69   WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 559  EPSVSRTRTPEEILEARNARLKRLEDQCKNLF-HKM------SLTSQRSDTL-SERLEEL 610
              +VSR    +  L+ R A L  L    KN+    +       +     D   S +++  
Sbjct: 129  Y-NVSR---LQPYLKLRQA-LLELRPA-KNVLIDGVLGSGKTWVAL---DVCLSYKVQCK 179

Query: 611  HD---YYGTSNERHSPRRHREGSQDSDDTRLRSPENEPLSGVSANV-PDSQENSQESDDT 666
             D   ++               + +S +T L     E L  +   + P+    S  S + 
Sbjct: 180  MDFKIFWLNL-----------KNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 667  RRRSAETNESHSGVSGNVSDLQDRIDTRLKSSPEINECTSAVSAVSEESSGLRSVDAIRP 726
            + R              +  +Q  +  RL  S     C             L        
Sbjct: 224  KLR--------------IHSIQAEL-RRLLKSKPYENC-------------LL------- 248

Query: 727  VLNHDEMTRRNVEAESRADAV-VQDRI--DTRLKSSPGINECTSAVSAVSEESSGLRSVD 783
            VL        NV+     +A  +  +I   TR K              +S  ++   S+D
Sbjct: 249  VL-------LNVQNAKAWNAFNLSCKILLTTRFKQ---------VTDFLSAATTTHISLD 292

Query: 784  AIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLK-TCVPMHSTPPES---NI 839
                 L  DE                            + LK         P E    N 
Sbjct: 293  HHSMTLTPDE-------------------------VKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 840  LATTRSVILPLVSDLKTR---LKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRA-- 894
                 S+I   + D        K V    L     I+             R+++++ +  
Sbjct: 328  RRL--SIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAE--YRKMFDRLSVF 381

Query: 895  ---------------AAAELEHKTMIEKELAKNALLEAKLKE-------IQEEIQAQLEK 932
                                    ++  +L K +L+E + KE       I  E++ +LE 
Sbjct: 382  PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 933  YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAEN--------HILNSQMTLVNNLFSN 984
                 + I++   NI    D     +++L     +         H+ N +      LF  
Sbjct: 442  EYALHRSIVD-HYNIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 985  MLIN-----------------PMINLDMLIKL------IQDNY----LLIIDLIN---NH 1014
            + ++                     L+ L +L      I DN      L+  +++     
Sbjct: 496  VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 1015 EINDTVSLLVDLEKKIDQETLAIQNDKQ------LKQLE 1047
            E N    L+      + +  +A+  + +       KQ++
Sbjct: 556  EEN----LICSKYTDLLR--IALMAEDEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1642
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 93.99
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.76
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.33
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.16
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 91.67
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 89.76
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 86.58
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 86.57
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 85.86
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 85.81
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 85.35
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 85.3
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 84.43
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 84.09
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 84.02
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 82.75
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 80.61
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 80.27
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
Probab=93.99  E-value=2.5  Score=43.61  Aligned_cols=124  Identities=15%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785        848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKK-LRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI  926 (1642)
Q Consensus       848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~-LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eL  926 (1642)
                      |.|+.++..+|+. |.--..|.--.-.||.+++...-. +|+| .+|.+.....+..           |++++...+-.|
T Consensus        12 ekQL~E~n~kLk~-EsE~~~rlkK~~tEl~k~~~~~E~~~rEL-q~~~~~L~~~k~~-----------Leke~~~LQa~L   78 (168)
T 3o0z_A           12 QKQLEEANDLLRT-ESDTAVRLRKSHTEMSKSISQLESLNREL-QERNRILENSKSQ-----------TDKDYYQLQAIL   78 (168)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            5677777777764 333334444445577777665543 2333 2333444444444           566666666666


Q ss_pred             HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785        927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN  984 (1642)
Q Consensus       927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq  984 (1642)
                      ..|..-..-..+.+..|+..|..+..|++.+...+....+|++.|+.-++-+=.--+.
T Consensus        79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~  136 (168)
T 3o0z_A           79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN  136 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666788899999999999999999999999999999999999887765554443
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00