Psyllid ID: psy16814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MNKIFKIFQSTLVINNVQRTFTTLYKPIFVKNNPLQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTNKSREW
Secondary Structure (PSIPRED)
cHHHHHHHHHHEEEEccccccccccccEEEccccccccccccccccccccccccccccccEEccccEEccHHHcccccEEEEEEccEEEEEccccccccccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHEHEEHHEEEEEcHHHHHHHccccEEcccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEccEEEEEEccccccccEccccccEEEEEEcEccccccccc
Coil and Loop (DISEMBL)
MNKIFKIFQSTLVINNVQRTFttlykpifvknnplqefpkapsilpyeqinllqpilpsvmlVNTWKYKAKVKKRckgcyflykegvlhnlchlkpkhkqilfhpkdkntwilsgvstnksrew
Flexible Loop (DISEMBL)
MNKIFKIFQSTLVINNVQRTFTTLYKPIFVKNNPLQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKqilfhpkdkntwilsgvstnksrew
Low Complexity Region (SEG)
MNKIFKIFQSTLVINNVQRTFTTLYKPIFVKNNPLQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTNKSREW
Disordered region (IsUnstruct)
***IFKIFQSTLVINNVQRTFTTLYKPIFVKNNPLQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSG*********
Disordered Region (DISOPRED)
*******FQSTLVINNVQRTFTTLYK*************************LLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLK**************TWILSGVST******
Disordered Region (DISEMBL)
MNKIFKIFQSTLVINNVQRTFTTLYKPIFVKNNPLQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTNKSREW
Disordered Region (DISPRO)
MNKIFKIFQSTLVINNVQRTFTTLYKPIFVKNN********PSILP**QINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNKIFKIFQSTLVINNVQRTFTTLYKPIFVKNNPLQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTNKSREW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
O94690	92	54S ribosomal protein c83	yes	N/A	0.403	0.543	0.365	0.0006

>sp|O94690|RTC6_SCHPO 54S ribosomal protein c83.06c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC83.06c PE=3 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 37 EFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKP 96
           F  +PS+LP+                  +K KA VKKRC  CYF+ ++G L+ LC   P
Sbjct: 39 AFRLSPSLLPWN-------------FSRGFKVKASVKKRCSSCYFVRRKGRLYVLCKKHP 85

Query: 97 KHK 99
          +HK
Sbjct: 86 RHK 88

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
156541188	131	PREDICTED: hypothetical protein LOC10011	0.604	0.572	0.413	9e-10
201025413	99	mitochondrial ribosomal protein L36 [Acy	0.653	0.818	0.402	3e-08
158295012	136	AGAP005927-PA [Anopheles gambiae str. PE	0.5	0.455	0.403	3e-08
332017254	131	39S ribosomal protein L36, mitochondrial	0.588	0.557	0.424	4e-08
307208451	130	39S ribosomal protein L36, mitochondrial	0.677	0.646	0.329	2e-07
157123746	134	mitochondrial ribosomal protein, L36, pu	1.0	0.925	0.261	2e-07
170047304	140	mitochondrial ribosomal protein L36 [Cul	0.717	0.635	0.333	3e-07
322793518	130	hypothetical protein SINV_12895 [Solenop	0.717	0.684	0.337	5e-07
321457090	123	hypothetical protein DAPPUDRAFT_301505 [	0.620	0.626	0.337	9e-07
157123748	95	mitochondrial ribosomal protein, L36, pu	0.75	0.978	0.297	1e-06

>gi|156541188|ref|XP_001599196.1| PREDICTED: hypothetical protein LOC100114144 [Nasonia vitripennis]

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query: 50  INLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKN 109
           ++ L PILP  M V   K K +++ RC+GCY++ ++G L+ +C LKP+HKQ+      K 
Sbjct: 57  VSFLTPILPQFMQVCGMKQKGRLQLRCEGCYYVSRQGRLYVMCKLKPRHKQMQMIKSFKK 116

Query: 110 TWILSGVSTNKSREW 124
           T IL+     K REW
Sbjct: 117 TRILTFAQQKKVREW 131

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|201025413|ref|NP_001128375.1| mitochondrial ribosomal protein L36 [Acyrthosiphon pisum]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 40  KAPSILPYEQINLLQPILPSVMLVNTWKYK--AKVKKRCKGCYFLYKEGVLHNLCHLKPK 97
           +AP IL      L  P +  + +V +  +K   KV+KRCK CYF+ ++  L+NLC    K
Sbjct: 17  RAPQILSV----LHTPPVTGLTIVPSRGFKVFGKVRKRCKDCYFVTRDQRLYNLCKTFQK 72

Query: 98  HKQILFHPKDKNTWILSGVSTNKSREW 124
           HKQ+     DK  +IL+GV   K REW
Sbjct: 73  HKQMSIRHTDKAYYILTGVQQKKQREW 99

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295012|ref|XP_315957.4| AGAP005927-PA [Anopheles gambiae str. PEST] gi|157015833|gb|EAA11645.5| AGAP005927-PA [Anopheles gambiae str. PEST]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 63  VNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTNKSR 122
           V+ +K K ++K+RCK CYF+ ++  L+ +C   P+HKQ+     D NTWIL+  +  K+R
Sbjct: 75  VSGFKVKGRLKRRCKDCYFVMRQERLYVICKTHPRHKQMSMKKHDHNTWILTDATQGKAR 134

Query: 123 EW 124
            W
Sbjct: 135 AW 136

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017254|gb|EGI58032.1| 39S ribosomal protein L36, mitochondrial [Acromyrmex echinatior]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 42/73 (57%)

Query: 52  LLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTW 111
           LLQPILP    +   K K +++ RCK CYFL K    + +C   P+HKQ+    K+  TW
Sbjct: 59  LLQPILPIYNSICGLKAKGRLQLRCKDCYFLCKNDTWYVMCKTHPRHKQVKIKKKEYKTW 118

Query: 112 ILSGVSTNKSREW 124
           IL+  S +K R W
Sbjct: 119 ILTWASQSKVRGW 131

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208451|gb|EFN85818.1| 39S ribosomal protein L36, mitochondrial [Harpegnathos saltator]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 41  APSILPYEQINLLQP-ILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHK 99
            P+ LP    +++ P I P    + + K +  +++RCK CYF+ +   L+ +C   P+HK
Sbjct: 46  TPNSLPDHSTSVILPCITPMYNSICSLKTRGVLQRRCKDCYFVSRHERLYVMCKSHPRHK 105

Query: 100 QILFHPKDKNTWILSGVSTNKSREW 124
           Q+    ++  TWIL+ VS  K R+W
Sbjct: 106 QVQMKKREYKTWILTSVSQKKKRDW 130

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123746|ref|XP_001653874.1| mitochondrial ribosomal protein, L36, putative [Aedes aegypti] gi|108874294|gb|EAT38519.1| AAEL009613-PB [Aedes aegypti]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 1   MNKIFKIFQSTLV--INNVQRTFTTLYKPIF---VKNNPLQEFPKAPSILPYEQINLLQP 55
           +++   +  + LV  ++   RT   L+  +    V ++PL        +L      LL P
Sbjct: 5   LSQCRTVLNTALVSSLSGASRTTVNLFHVLAGRRVMDSPLANQTSKALLLDRSSNQLLVP 64

Query: 56  -ILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILS 114
            + P +     +K K  +K+RCK C+F+ +   L+ +C   P+HKQ+    +++NTWIL+
Sbjct: 65  TVSPMLNPACGFKVKGHLKRRCKDCFFVVRHQRLYVICKTHPRHKQMSMKKRERNTWILT 124

Query: 115 GVSTNKSREW 124
             +   +R W
Sbjct: 125 DATQGPARAW 134

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047304|ref|XP_001851167.1| mitochondrial ribosomal protein L36 [Culex quinquefasciatus] gi|167869748|gb|EDS33131.1| mitochondrial ribosomal protein L36 [Culex quinquefasciatus]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 36  QEFPKAPSILPYEQINLLQPIL-PSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHL 94
           Q      ++L      LL P   P +  V  +K K ++K+RCK CYF+ ++  L  +C  
Sbjct: 51  QSASSRTALLNQSPAQLLLPTAGPLLSQVCGFKVKGRLKRRCKDCYFVVRQQRLFVICKT 110

Query: 95  KPKHKQILFHPKDKNTWILSGVSTNKSREW 124
            P+HKQ+    +D NTWIL+  + +  R W
Sbjct: 111 HPRHKQMSMKKRDHNTWILTDATQSPVRAW 140

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322793518|gb|EFZ17044.1| hypothetical protein SINV_12895 [Solenopsis invicta]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%)

Query: 36  QEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLK 95
           +E   + S L       LQP+LP    V   K K +++ RCK CY+  K    + LC+  
Sbjct: 42  REKSSSLSDLSNHSTRFLQPVLPMYNSVCGLKVKGRLQLRCKDCYYYCKNERWYVLCNTH 101

Query: 96  PKHKQILFHPKDKNTWILSGVSTNKSREW 124
           P+HKQ+    ++  TW+L+  S +K R W
Sbjct: 102 PRHKQVQMKKREYKTWLLTWASQSKVRGW 130

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321457090|gb|EFX68183.1| hypothetical protein DAPPUDRAFT_301505 [Daphnia pulex]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 48  EQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKD 107
            Q  LL P +P+++    +K   K  KRCK CY + ++  +H +C  KP+HKQ+     +
Sbjct: 47  AQNQLLTPTVPTLVPSCGFKVVGKPMKRCKDCYKVVRQERVHIICKTKPRHKQMSMKKDE 106

Query: 108 KNTWILSGVSTNKSREW 124
             TWIL+  +    R W
Sbjct: 107 DKTWILTSATMGPKRPW 123

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123748|ref|XP_001653875.1| mitochondrial ribosomal protein, L36, putative [Aedes aegypti] gi|108874295|gb|EAT38520.1| AAEL009613-PA [Aedes aegypti]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 32  NNPLQEFPKAPSILPYEQINLLQP-ILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHN 90
           ++PL        +L      LL P + P +     +K K  +K+RCK C+F+ +   L+ 
Sbjct: 2   DSPLANQTSKALLLDRSSNQLLVPTVSPMLNPACGFKVKGHLKRRCKDCFFVVRHQRLYV 61

Query: 91  LCHLKPKHKQILFHPKDKNTWILSGVSTNKSREW 124
           +C   P+HKQ+    +++NTWIL+  +   +R W
Sbjct: 62  ICKTHPRHKQMSMKKRERNTWILTDATQGPARAW 95

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
FB|FBgn0042112	128	mRpL36 "mitochondrial ribosoma	0.572	0.554	0.338	8.7e-08
POMBASE|SPBC83.06c	92	SPBC83.06c "mitochondrial ribo	0.274	0.369	0.529	9e-06
UNIPROTKB|Q9P0J6	103	MRPL36 "39S ribosomal protein	0.403	0.485	0.392	2.4e-05
MGI|MGI:2137228	102	Mrpl36 "mitochondrial ribosoma	0.596	0.725	0.333	2.4e-05
WB|WBGene00010783	77	mrpl-36 [Caenorhabditis elegan	0.274	0.441	0.5	3e-05
UNIPROTKB|E2RNM7	110	MRPL36 "Ribosomal protein" [Ca	0.370	0.418	0.369	8.1e-05
RGD|1306375	97	Mrpl36 "mitochondrial ribosoma	0.467	0.597	0.370	8.1e-05
UNIPROTKB|G3MYN6	100	MRPL36 "Ribosomal protein" [Bo	0.282	0.35	0.485	0.0001
UNIPROTKB|P0A7Q6	38	rpmJ "50S ribosomal subunit pr	0.274	0.894	0.441	0.00013
UNIPROTKB|F1NQQ6	141	F1NQQ6 "Ribosomal protein" [Ga	0.274	0.241	0.441	0.00013

FB|FBgn0042112 mRpL36 "mitochondrial ribosomal protein L36" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query:    52 LLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTW 111
             LL P    V  V  +K K ++K+RCK CY + ++   + +C   P+HKQ+    +D  +W
Sbjct:    56 LLTPGSTLVQQVAGFKVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQMSMKKRDYKSW 115

Query:   112 ILSGVSTNKSR 122
             IL+  + +K R
Sbjct:   116 ILTHATQSKER 126

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

POMBASE|SPBC83.06c SPBC83.06c "mitochondrial ribosomal protein subunit L36, Rtc6 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query:    66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHK 99
             +K KA VKKRC  CYF+ ++G L+ LC   P+HK
Sbjct:    55 FKVKASVKKRCSSCYFVRRKGRLYVLCKKHPRHK 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0032543 "mitochondrial translation" evidence=NAS

UNIPROTKB|Q9P0J6 MRPL36 "39S ribosomal protein L36, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query:    51 NLLQP-ILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
             +LL P +LP ++    +K K  +KKRCK CY + + G  +  C   P+HKQ
Sbjct:    50 SLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQ 100

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=NAS

GO:0006412 "translation" evidence=NAS

MGI|MGI:2137228 Mrpl36 "mitochondrial ribosomal protein L36" [Mus musculus (taxid:10090)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/75 (33%), Positives = 36/75 (48%)

Query:    26 KPIFVKNNPLQEFPKAPSILPYEQINLLQPILPSVMLVNTWKYKAKVKKRCKGCYFLYKE 85
             KP    +  L   P+A        +   +P LP+++    +K K  +KKRCK CY + + 
Sbjct:    26 KPRVFSSFLLGTLPRAKPCAEVRSVLCGRP-LPTLLPSLGFKTKGVIKKRCKDCYKVKRR 84

Query:    86 GVLHNLCHLKPKHKQ 100
             G    LC   PKHKQ
Sbjct:    85 GRWFILCKTNPKHKQ 99

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

WB|WBGene00010783 mrpl-36 [Caenorhabditis elegans (taxid:6239)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query:    66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHK 99
             +K K+++K RC+ CYFL  EG LH  C+  P+HK
Sbjct:    33 FKVKSRLKLRCRSCYFLRVEGRLHVECNENPRHK 66

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

UNIPROTKB|E2RNM7 MRPL36 "Ribosomal protein" [Canis lupus familiaris (taxid:9615)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query:    55 PILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
             P+LP +     +K K  +K+RC+ CY + + G  +  C   PKHKQ
Sbjct:    62 PLLPGLQPALGFKTKGVIKERCRDCYRVKRRGRWYIYCKTNPKHKQ 107

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1306375 Mrpl36 "mitochondrial ribosomal protein L36" [Rattus norvegicus (taxid:10116)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query:    42 PSILPYEQINLLQ---PILPSVMLVNTWKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKH 98
             PS  P  ++  L    P+L S+     +K K  +KKRC+ CY + + G    LC   PKH
Sbjct:    34 PSAKPCAEVRSLLCGGPVL-SLQPSLGFKTKGVIKKRCRDCYMVKRRGRWFVLCKTNPKH 92

Query:    99 KQ 100
             KQ
Sbjct:    93 KQ 94

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|G3MYN6 MRPL36 "Ribosomal protein" [Bos taurus (taxid:9913)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query:    66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
             +K K  +KKRCKGCY + + G     C   PKHKQ
Sbjct:    63 FKTKGVLKKRCKGCYLVKRRGRWFIYCKTNPKHKQ 97

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P0A7Q6 rpmJ "50S ribosomal subunit protein L36" [Escherichia coli K-12 (taxid:83333)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query:    67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
             K +A VKK C+ C  + ++GV+  +C  +PKHKQ
Sbjct:     2 KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1NQQ6 F1NQQ6 "Ribosomal protein" [Gallus gallus (taxid:9031)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query:    67 KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
             K K  +K+RCK CY + + G L+  C   P+HKQ
Sbjct:   105 KTKTSIKRRCKDCYIVRRRGRLYVCCKTNPRHKQ 138

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
pfam00444	38	pfam00444, Ribosomal_L36, Ribosomal protein L36	7e-07
COG0257	38	COG0257, RpmJ, Ribosomal protein L36 [Translation,	2e-04

>gnl|CDD|201231 pfam00444, Ribosomal_L36, Ribosomal protein L36

 Score = 42.5 bits (101), Expect = 7e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKKRCK C  + ++G ++ +C   P+HKQ
Sbjct: 2   KVRSSVKKRCKDCKIVRRKGRVYVICKTNPRHKQ 35

Length = 38

>gnl|CDD|223335 COG0257, RpmJ, Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKKRC+ C  + ++G ++ +C   PKHKQ
Sbjct: 2   KVRASVKKRCRDCKIVRRKGRVYVICKKNPKHKQ 35

Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
KOG4122|consensus	38		99.89
PF00444	38	Ribosomal_L36: Ribosomal protein L36; InterPro: IP	99.89
COG0257	38	RpmJ Ribosomal protein L36 [Translation, ribosomal	99.88
PRK00465	37	rpmJ 50S ribosomal protein L36; Reviewed	99.87
TIGR01022	37	rpmJ_bact ribosomal protein L36, bacterial type. P	99.86
PRK00831	41	rpmJ 50S ribosomal protein L36; Validated	99.85
CHL00029	26	rpl36 ribosomal protein L36	99.31

>KOG4122|consensus

Probab=99.89  E-value=1.4e-24  Score=134.83  Aligned_cols=38  Identities=45%  Similarity=0.827  Sum_probs=37.4

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||++|+|||+|+|+||+||||++|||||||||
T Consensus         1 fKvk~svkk~C~~Cy~VrRrgR~yViC~~~prHKqrqg   38 (38)
T KOG4122|consen    1 FKVKASVKKRCKDCYLVRRRGRVYVICKTHPRHKQRQG   38 (38)
T ss_pred             CchhHHHHHhhhhceEEEEcccEEEEcCCCcchhhhcC
Confidence            89999999999999999999999999999999999997

>PF00444 Ribosomal_L36: Ribosomal protein L36; InterPro: IPR000473 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.89  E-value=6.8e-24  Score=131.55  Aligned_cols=38  Identities=39%  Similarity=0.761  Sum_probs=33.9

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++||+++|++|++|+|+||+||||++|||||||||
T Consensus         1 MKVr~slk~~c~~C~~vrR~gr~~Vick~nprhKqrQg   38 (38)
T PF00444_consen    1 MKVRSSLKKRCKDCYVVRRKGRLYVICKKNPRHKQRQG   38 (38)
T ss_dssp             -BESSS-S-SSSTSEEEEETTEEEEEESSSGGGCEEE-
T ss_pred             CcchhhhhhcCCCCceEEECCEEEEECCCCCchhccCC
Confidence            99999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L36 is the smallest protein from the large subunit of the prokaryotic ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [] can be grouped into: bacterial L36; algal and plant chloroplast L36; Cyanelle L36. L36 is a small basic and cysteine-rich protein of 37 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_6 2HGU_8 2HGJ_8 1DGZ_A 1DFE_A 2HGQ_8 1VSP_b 1VSA_b 3PIP_4 1VOU_6 ....

>COG0257 RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=2.9e-23  Score=129.25  Aligned_cols=38  Identities=39%  Similarity=0.689  Sum_probs=37.5

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|+|++|++|++|||+|++||||++|||||||||
T Consensus         1 MKV~~SvK~~c~~CkivrRkGrv~VIck~~prhKqrQg   38 (38)
T COG0257           1 MKVRASVKKRCRDCKIVRRKGRVYVICKKNPKHKQRQG   38 (38)
T ss_pred             CccccccccccCCceEEEecCEEEEEeCCCcchhhhcC
Confidence            99999999999999999999999999999999999997

>PRK00465 rpmJ 50S ribosomal protein L36; Reviewed

Probab=99.87  E-value=3e-23  Score=128.37  Aligned_cols=37  Identities=41%  Similarity=0.679  Sum_probs=36.3

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||++|++|++|||+|++|||| +|||||||||
T Consensus         1 MKVr~SvKk~c~~C~vvrR~gr~~Vic-~nprhKqRQg   37 (37)
T PRK00465          1 MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG   37 (37)
T ss_pred             CcchhhhhhcCCCCEEEEECCEEEEEc-CCCCcccccC
Confidence            999999999999999999999999999 7999999997

>TIGR01022 rpmJ_bact ribosomal protein L36, bacterial type

Probab=99.86  E-value=1.2e-22  Score=125.72  Aligned_cols=37  Identities=41%  Similarity=0.718  Sum_probs=36.1

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||++|++|++|||+|++||||+ |||||||||
T Consensus         1 MKVr~SvKk~c~~C~vvrR~grv~Vick-~prhKqRQG   37 (37)
T TIGR01022         1 MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG   37 (37)
T ss_pred             CcchhhhhhhCcCCeEEEECCEEEEEeC-CCCccccCC
Confidence            9999999999999999999999999998 799999997

Proteins found by this model occur exclusively in bacteria and organelles.

>PRK00831 rpmJ 50S ribosomal protein L36; Validated

Probab=99.85  E-value=3.6e-22  Score=125.98  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             ceEecceec---cCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKK---RCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKk---rC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||+   +|++|++|||+|++||||++|||||||||
T Consensus         1 MKVr~SvKk~~~~~~~c~vvrR~grv~Vick~nprhKqRQG   41 (41)
T PRK00831          1 MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG   41 (41)
T ss_pred             CchhhhhhhhhccCCCCEEEEeCCEEEEEcCCCCcccccCC
Confidence            999999999   56999999999999999999999999997

>CHL00029 rpl36 ribosomal protein L36

Probab=99.31  E-value=9.2e-13  Score=76.19  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=25.5

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEE
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNL   91 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyVi   91 (124)
                      |||++|||++|++|++|||+|++|||
T Consensus         1 MKVr~Svkk~c~~c~ivrR~g~v~Vi   26 (26)
T CHL00029          1 MKIRASVRKICEKCRLIRRRGRIFVI   26 (26)
T ss_pred             CcccccccccCCCCEEEeecCEEEEC
Confidence            99999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
3bbo_6	104	Ribosomal protein L36; large ribosomal subunit, sp	2e-08
3r8s_4	38	50S ribosomal protein L36; protein biosynthesis, R	8e-07
2zjr_4	37	50S ribosomal protein L36; ribosome, large ribosom	2e-04

>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 104

 Score = 47.8 bits (113), Expect = 2e-08
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKK C+ C  + + G ++ +C   PKHKQ
Sbjct: 2   KVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQ 35

>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ... Length = 38

 Score = 41.7 bits (98), Expect = 8e-07
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKK C+ C  + ++GV+  +C  +PKHKQ
Sbjct: 2   KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35

>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ... Length = 37

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKK C  C  + + G +  +C    KHKQ
Sbjct: 2   KVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQ 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
3r8s_4	38	50S ribosomal protein L36; protein biosynthesis, R	99.9
2zjr_4	37	50S ribosomal protein L36; ribosome, large ribosom	99.87
3bbo_6	104	Ribosomal protein L36; large ribosomal subunit, sp	99.87

>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...

Probab=99.90  E-value=1.1e-24  Score=134.59  Aligned_cols=38  Identities=39%  Similarity=0.726  Sum_probs=37.6

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||++|++|++|||+|++||||++|||||||||
T Consensus         1 MKVr~Svk~~c~~C~vvrR~grv~Vick~nPrhKqRQG   38 (38)
T 3r8s_4            1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG   38 (38)
T ss_dssp             CEECSCCCCCSTTEEEEEETTEEEEEETTCGGGCEECC
T ss_pred             CccchhhhhhccCCeEEEECCEEEEEeCCCCchhhcCC
Confidence            99999999999999999999999999999999999997

>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...

Probab=99.87  E-value=1.5e-23  Score=128.76  Aligned_cols=37  Identities=32%  Similarity=0.536  Sum_probs=36.5

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||++|++|++|||+||+||||+ |||||||||
T Consensus         1 MKVr~slk~~c~~C~vvrR~grv~Vick-nPrhKqrQg   37 (37)
T 2zjr_4            1 MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG   37 (37)
T ss_dssp             CEECSSCCCCSTTCCCEECSSCEEECCS-SSTTCEECC
T ss_pred             CccchhHHHhhcCCEEEEECCEEEEECC-CCcccccCC
Confidence            9999999999999999999999999999 999999997

>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.87  E-value=1.1e-23  Score=153.20  Aligned_cols=47  Identities=30%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccCCCCCCceeEEeeeecC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILFHPKDKNTWILSGVSTN  119 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg~k~~~~twilt~atq~  119 (124)
                      ||||+|||++|++|++|||+||||||||+|||||||||       |++|.|+|+
T Consensus         1 MKVRaSlKk~C~~CkvVRRkGRvyVICK~NPRHKQRQG-------~~~T~a~~~   47 (104)
T 3bbo_6            1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQG-------GFSSFAYEG   47 (104)
T ss_dssp             CBCCSCCCCCSTTBCCEEETTEEEBCBSSCGGGCBCCC----------------
T ss_pred             CccchhhHHhhccCeEEEECCEEEEEcCCCcchhhhcc-------ceeeeeccC
Confidence            99999999999999999999999999999999999998       899999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d2qam41	38	g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherich	2e-07
d2zjr41	37	g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococc	2e-05

>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]} Length = 38

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (100), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K +A VKK C+ C  + ++GV+  +C  +PKHKQ
Sbjct: 2   KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQ 35

>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]} Length = 37

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 37.3 bits (87), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 67  KYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQ 100
           K ++ VKK C  C  + + G +  +C    KHKQ
Sbjct: 2   KVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQ 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d2qam41	38	Ribosomal protein L36 {Escherichia coli [TaxId: 56	99.89
d2zjr41	37	Ribosomal protein L36 {Deinococcus radiodurans [Ta	99.88

>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.4e-25  Score=137.17  Aligned_cols=38  Identities=39%  Similarity=0.726  Sum_probs=37.6

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||++|++|++|+|+|++||||++|||||||||
T Consensus         1 MKVr~svKk~C~~C~ivrR~Grv~ViCk~nPrHKQRQG   38 (38)
T d2qam41           1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG   38 (38)
T ss_dssp             CCCCSCCCCCSTTBCCCCBTTBCCCCBSSCGGGCCCCC
T ss_pred             CccchhhhhhCCCCeEEEecCEEEEEeCCCCcccccCC
Confidence            99999999999999999999999999999999999997

>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.88  E-value=4e-24  Score=130.07  Aligned_cols=37  Identities=32%  Similarity=0.536  Sum_probs=36.2

Q ss_pred             ceEecceeccCCCceEEEeCCEEEEEcCCCCCcccccC
Q psy16814         66 WKYKAKVKKRCKGCYFLYKEGVLHNLCHLKPKHKQILF  103 (124)
Q Consensus        66 MKVrsSlKkrC~~C~vVRR~gRlyViCk~nPRHKQRQg  103 (124)
                      |||++|||++|++|++|||+|++||||+ |||||||||
T Consensus         1 MKVr~SvKk~C~~C~virR~g~v~ViC~-npkHKQRQG   37 (37)
T d2zjr41           1 MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG   37 (37)
T ss_dssp             CEECSSCCCCSTTCCCEECSSCEEECCS-SSTTCEECC
T ss_pred             CccchhhhhhccCceEEEeCCEEEEEeC-CCCccccCC
Confidence            9999999999999999999999999995 999999997