Psyllid ID: psy16823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQS
Secondary Structure (PSIPRED)
ccccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccEcHHHHccccccHHHccccccccc
Coil and Loop (DISEMBL)
mpayhstltdfnqcvgniamlpiktqyrgpapqfttgeQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLqkcptkaqgqNEMYSLALAkfdlpgeagfplnsvyakpqNLLFKAKKlkeangykfvwVRDCKIMIRKNESSRIYVIRNCLKKlqkcptkaqgqNEMYSLALAkfdlpgeagfplnsvyakpqsqneADLMKNYLTQVRQETGLRVCervfntpdgkpskwwlcfskkrfmdKSLTALGQS
Flexible Loop (DISEMBL)
mpayhstlTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKklkeangykfvwvrdCKIMIRKNESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERvfntpdgkpskwwlcfskkrfmdksltalgqs
Low Complexity Region (SEG)
MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQS
Disordered region (IsUnstruct)
******TLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYA*********LMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFM**********
Disordered Region (DISOPRED)
MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPA*QFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPT**QGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCPT*AQGQNEMYSLALAKFDLPGEAGFPLNSVYAK********LMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMD**LT*****
Disordered Region (DISEMBL)
MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQ********QNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKL*********QNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQS
Disordered Region (DISPRO)
*****STLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRF**K********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
O15145	178	Actin-related protein 2/3	yes	N/A	0.460	0.679	0.642	5e-43
Q3T035	178	Actin-related protein 2/3	yes	N/A	0.460	0.679	0.642	5e-43
Q9JM76	178	Actin-related protein 2/3	yes	N/A	0.452	0.668	0.636	3e-42
Q9XWV3	183	Probable actin-related pr	yes	N/A	0.456	0.655	0.543	7e-28
Q9Y7J4	174	Actin-related protein 2/3	yes	N/A	0.448	0.678	0.512	3e-27
Q05933	178	Actin-related protein 2/3	yes	N/A	0.452	0.668	0.463	2e-24
O96624	174	Actin-related protein 2/3	yes	N/A	0.448	0.678	0.426	9e-24
O15604	128	Probable actin-related pr	N/A	N/A	0.444	0.914	0.347	1e-10

>sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 105/123 (85%), Gaps = 2/123 (1%)

Query: 1   MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
           MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct: 1   MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query: 60  IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
           IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query: 120 PQN 122
           P N
Sbjct: 120 PAN 122

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
Homo sapiens (taxid: 9606)

>sp|Q3T035|ARPC3_BOVIN Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 105/123 (85%), Gaps = 2/123 (1%)

Query: 1   MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
           MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct: 1   MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query: 60  IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
           IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query: 120 PQN 122
           P N
Sbjct: 120 PAN 122

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|Q9JM76|ARPC3_MOUSE Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 104/121 (85%), Gaps = 2/121 (1%)

Query: 1   MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
           MPAYHS+L D + + +GN+A+LP+++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct: 1   MPAYHSSLMDPDTKLIGNMALLPLRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query: 60  IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
           IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query: 120 P 120
           P
Sbjct: 120 P 120

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Mus musculus (taxid: 10090)

>sp|Q9XWV3|ARPC3_CAEEL Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1

 Score =  124 bits (311), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 89/127 (70%), Gaps = 7/127 (5%)

Query: 1   MPAYHSTLTDFNQCV--GNIAM--LPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFR 56
           MPAYHS      + +  GN  M  LPI+T ++GPAPQ  T + DII+EAL YFK N+FFR
Sbjct: 1   MPAYHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQ--TNQDDIIDEALTYFKPNIFFR 58

Query: 57  TYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFD-LPGEAGFPLNS 115
            +EIK  ADR +IY+  YITECL+KLQK P K  GQ ++++LAL+    +PGE GFPLNS
Sbjct: 59  EFEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNS 118

Query: 116 VYAKPQN 122
           +Y  PQ+
Sbjct: 119 MYKAPQS 125

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9Y7J4|ARPC3_SCHPO Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 5/123 (4%)

Query: 1   MPAYHST---LTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRT 57
           MPAYHS+   LTD     GNIAMLP+KT++RGPA      + DII+E +  F+AN FFR 
Sbjct: 1   MPAYHSSFLSLTDV-PTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRN 59

Query: 58  YEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVY 117
           +EIK  ADR LIY TL+I+ECL ++     +   + ++ SLAL  F +PG AGFPLN++Y
Sbjct: 60  FEIKGPADRTLIYGTLFISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALY 118

Query: 118 AKP 120
           A P
Sbjct: 119 APP 121

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q05933|ARPC3_YEAST Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC18 PE=1 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 80/123 (65%), Gaps = 4/123 (3%)

Query: 1   MPAYHSTLT---DFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRT 57
           MPAYHST     + ++ VGN A+LP+ T++RGPA   +  + DII+E L  F+AN FF+ 
Sbjct: 1   MPAYHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYP-SNSDYDIIDECLDLFRANSFFKN 59

Query: 58  YEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVY 117
           +EIKS ADR+LIY  L+I +CL  L+   +  +    + ++AL  F LPG  GFPLN+VY
Sbjct: 60  FEIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVY 119

Query: 118 AKP 120
             P
Sbjct: 120 QVP 122

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O96624|ARPC3_DICDI Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 4/122 (3%)

Query: 3   AYHSTLTDFN---QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
            YHS   D +   + VGN+ +LP+KT ++GPAP+      DII+EAL  FKAN+ FR +E
Sbjct: 2   VYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNFE 61

Query: 60  IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
           ++   DR+LIY+TLYIT+CL K+     KA  +  ++ +A  +F +PGE+ FPL  +   
Sbjct: 62  VQGNGDRVLIYLTLYITKCLLKIAPM-NKADAEKALFLIAQEQFSIPGESAFPLGGLVTV 120

Query: 120 PQ 121
           P 
Sbjct: 121 PN 122

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.

Dictyostelium discoideum (taxid: 44689)

>sp|O15604|ARPC3_ENTHI Probable actin-related protein 2/3 complex subunit 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 3   AYHSTLT-DFNQCVGNIAMLPIKTQYR-GPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           AYHS L  D  Q  GN  ++  KT+ +  P       + DI++EA+ Y+KANVF++  ++
Sbjct: 8   AYHSELDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDM 67

Query: 61  K-SEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
              EAD+LL Y+  Y+   L       TK       +SLA+  F LPG+  F L  +   
Sbjct: 68  SICEADKLLAYLMFYLQSLLLTFTG-RTKVDCDKMAFSLAIENFGLPGDGKFCLGGIADP 126

Query: 120 P 120
           P
Sbjct: 127 P 127

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Entamoeba histolytica (taxid: 5759)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
110756153	177	PREDICTED: actin-related protein 2/3 com	0.441	0.655	0.745	5e-49
332376162	177	unknown [Dendroctonus ponderosae]	0.441	0.655	0.745	1e-48
195454172	178	GK12788 [Drosophila willistoni] gi|19417	0.441	0.651	0.735	1e-48
380011865	177	PREDICTED: actin-related protein 2/3 com	0.441	0.655	0.737	2e-48
195108161	177	GI23512 [Drosophila mojavensis] gi|19391	0.460	0.683	0.729	3e-48
195395500	177	GJ10263 [Drosophila virilis] gi|19414308	0.460	0.683	0.737	3e-48
340712705	177	PREDICTED: actin-related protein 2/3 com	0.441	0.655	0.737	3e-48
383861398	177	PREDICTED: actin-related protein 2/3 com	0.441	0.655	0.729	3e-48
289741469	177	actin-related protein ARP2/3 complex sub	0.456	0.677	0.743	4e-48
307175946	177	Actin-related protein 2/3 complex subuni	0.395	0.587	0.741	6e-48

>gi|110756153|ref|XP_001120355.1| PREDICTED: actin-related protein 2/3 complex subunit 3 isoform 1 [Apis mellifera]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 107/122 (87%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS+  + N  VGN+A+LPI+T +RGPAP F   + DII+EALY+FKANVFFRTYEI
Sbjct: 1   MPAYHSSFIESNGNVGNMALLPIRTHFRGPAPPFNNKDLDIIDEALYFFKANVFFRTYEI 60

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSEADR+LIYITLYITECLK+LQKC T+AQ  NEMYSLA++KFD+PG+AGFPLNSVYAKP
Sbjct: 61  KSEADRVLIYITLYITECLKRLQKCATQAQATNEMYSLAISKFDIPGDAGFPLNSVYAKP 120

Query: 121 QN 122
            N
Sbjct: 121 SN 122

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376162|gb|AEE63221.1| unknown [Dendroctonus ponderosae]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 108/122 (88%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS+  +  + VGN A+LP++T +RGPAPQ  + EQDII+EALYYFKANVFFRTYEI
Sbjct: 1   MPAYHSSFLEPPKRVGNTAILPLRTSFRGPAPQQVSAEQDIIDEALYYFKANVFFRTYEI 60

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSEADRLLIYITLYITECLKKLQKC  K+Q QNEMYSLA+++FD+PG+AGFPLNSVY+KP
Sbjct: 61  KSEADRLLIYITLYITECLKKLQKCANKSQAQNEMYSLAISRFDIPGDAGFPLNSVYSKP 120

Query: 121 QN 122
            +
Sbjct: 121 AD 122

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454172|ref|XP_002074120.1| GK12788 [Drosophila willistoni] gi|194170205|gb|EDW85106.1| GK12788 [Drosophila willistoni]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 106/121 (87%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS + +F Q VGNIA+LP++TQ RGPAP     E DII+E+LY+FKANVFFRTYEI
Sbjct: 1   MPAYHSQIKEFRQQVGNIAILPLRTQVRGPAPIANNAESDIIDESLYFFKANVFFRTYEI 60

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSE DR+LIY+TLYITECLK+L +C +KAQGQ EMYSLA++KFD+PGEAGFPLN+VYAKP
Sbjct: 61  KSEVDRVLIYVTLYITECLKRLTRCTSKAQGQQEMYSLAISKFDIPGEAGFPLNAVYAKP 120

Query: 121 Q 121
           Q
Sbjct: 121 Q 121

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011865|ref|XP_003690014.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like isoform 1 [Apis florea]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 106/122 (86%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS+  + N  VGN+A+LPI+T +RGPAP F   + DII+EALY+FKANVFFRTYEI
Sbjct: 1   MPAYHSSFVESNGNVGNMALLPIRTHFRGPAPPFNNKDLDIIDEALYFFKANVFFRTYEI 60

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSEADR+LIYITLYITECLK+LQKC T+AQ  NEMYSLA++KFD+PG+ GFPLNSVYAKP
Sbjct: 61  KSEADRVLIYITLYITECLKRLQKCATQAQATNEMYSLAISKFDIPGDPGFPLNSVYAKP 120

Query: 121 QN 122
            N
Sbjct: 121 SN 122

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195108161|ref|XP_001998661.1| GI23512 [Drosophila mojavensis] gi|193915255|gb|EDW14122.1| GI23512 [Drosophila mojavensis]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 108/122 (88%), Gaps = 1/122 (0%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS + DF Q VGN+A+LP++TQ RGPAP  T  E DII+E+LY+FKANVFFRTYE+
Sbjct: 1   MPAYHSQIKDFRQQVGNMAILPLRTQVRGPAPS-TNTENDIIDESLYFFKANVFFRTYEV 59

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSE DR+LIY+TLYITECLK+L +C +KAQGQ EMYSLA++KFD+PGE+GFPLNSVYAKP
Sbjct: 60  KSEVDRVLIYVTLYITECLKRLTRCTSKAQGQQEMYSLAISKFDIPGESGFPLNSVYAKP 119

Query: 121 QN 122
           Q+
Sbjct: 120 QS 121

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195395500|ref|XP_002056374.1| GJ10263 [Drosophila virilis] gi|194143083|gb|EDW59486.1| GJ10263 [Drosophila virilis]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 107/122 (87%), Gaps = 1/122 (0%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS + DF Q VGN+A+LP++TQ RGPAP     E DII+E+LY+FKANVFFRTYE+
Sbjct: 1   MPAYHSQIKDFRQQVGNMAILPLRTQVRGPAPSANV-ESDIIDESLYFFKANVFFRTYEV 59

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSE DR+LIYITLYITECLK+L +C +KAQGQ EMYSLA++KFD+PGEAGFPLNSVYAKP
Sbjct: 60  KSEVDRVLIYITLYITECLKRLTRCTSKAQGQQEMYSLAISKFDIPGEAGFPLNSVYAKP 119

Query: 121 QN 122
           Q+
Sbjct: 120 QS 121

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712705|ref|XP_003394896.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like [Bombus terrestris] gi|350408956|ref|XP_003488564.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like [Bombus impatiens]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 106/122 (86%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS+  + N  VGN+A+LPI+T +RGPAP F   + DII+EALY+FKANVFFRTYEI
Sbjct: 1   MPAYHSSFIENNGNVGNMALLPIRTHFRGPAPPFNNKDLDIIDEALYFFKANVFFRTYEI 60

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSEADR+LIYITLYITECLK+LQKC T+AQ  NEMYSLA++KFD+PG+ GFPLNSVYAKP
Sbjct: 61  KSEADRVLIYITLYITECLKRLQKCATQAQATNEMYSLAISKFDIPGDPGFPLNSVYAKP 120

Query: 121 QN 122
            N
Sbjct: 121 SN 122

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861398|ref|XP_003706173.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like [Megachile rotundata]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 105/122 (86%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS+  + N  +GN+A+LPI+T +RGPAP F   + DII+EALY+FKANVFFRTYEI
Sbjct: 1   MPAYHSSFVEHNGNIGNMALLPIRTHFRGPAPPFNGKDLDIIDEALYFFKANVFFRTYEI 60

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSEADR+LIYITLYITECLK+LQKC T AQ  NEMYSLA++KFD+PG+ GFPLNSVYAKP
Sbjct: 61  KSEADRVLIYITLYITECLKRLQKCATHAQATNEMYSLAISKFDIPGDPGFPLNSVYAKP 120

Query: 121 QN 122
            N
Sbjct: 121 NN 122

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741469|gb|ADD19482.1| actin-related protein ARP2/3 complex subunit ARPC3 [Glossina morsitans morsitans]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 107/121 (88%), Gaps = 1/121 (0%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS + +F+  VGN+++LP++TQYRGPAP   T + DII+E+LYYFKANVFFRTYEI
Sbjct: 1   MPAYHSQIKEFSSTVGNMSILPLRTQYRGPAPSVHT-DNDIIDESLYYFKANVFFRTYEI 59

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSE DR+LIYITLYITECLKKLQ+C  K QGQ EMYSLA++KFD+PGEAGFPLN+VYAKP
Sbjct: 60  KSEVDRVLIYITLYITECLKKLQRCANKNQGQQEMYSLAISKFDIPGEAGFPLNAVYAKP 119

Query: 121 Q 121
           Q
Sbjct: 120 Q 120

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175946|gb|EFN65756.1| Actin-related protein 2/3 complex subunit 3 [Camponotus floridanus]

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 106/120 (88%)

Query: 1   MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           MPAYHS+ T  +  +GN+A+LPIKT +RGPAP F   EQDII+EALY+FKANVFFRTYEI
Sbjct: 1   MPAYHSSFTKNHGTIGNMALLPIKTTFRGPAPPFNNKEQDIIDEALYFFKANVFFRTYEI 60

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           KSEADR+LIYITL+ITECLKKLQKC T+ Q  NEM+SLA++KFD+PG++GFPLNSVYAKP
Sbjct: 61  KSEADRVLIYITLFITECLKKLQKCATQPQAMNEMFSLAISKFDIPGDSGFPLNSVYAKP 120

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
FB|FBgn0038369	177	Arpc3A "Actin-related protein	0.456	0.677	0.702	8.1e-44
UNIPROTKB|E1C8Y3	178	ARPC3 "Uncharacterized protein	0.460	0.679	0.666	3.2e-42
UNIPROTKB|Q3T035	178	ARPC3 "Actin-related protein 2	0.460	0.679	0.642	1.7e-41
UNIPROTKB|O15145	178	ARPC3 "Actin-related protein 2	0.460	0.679	0.642	1.7e-41
UNIPROTKB|B5APU8	178	ARPC3 "Uncharacterized protein	0.460	0.679	0.642	1.7e-41
FB|FBgn0065032	174	Arpc3B "Actin-related protein	0.460	0.695	0.614	2.8e-41
MGI|MGI:1928375	178	Arpc3 "actin related protein 2	0.452	0.668	0.636	9.6e-41
UNIPROTKB|J9P309	178	LOC100856747 "Uncharacterized	0.460	0.679	0.634	9.6e-41
ZFIN|ZDB-GENE-040625-107	178	arpc3 "actin related protein 2	0.460	0.679	0.642	1.6e-40
UNIPROTKB|E2R985	203	E2R985 "Uncharacterized protei	0.460	0.596	0.626	2.6e-40

FB|FBgn0038369 Arpc3A "Actin-related protein 2/3 complex, subunit 3A" [Drosophila melanogaster (taxid:7227)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 85/121 (70%), Positives = 104/121 (85%)

Query:     1 MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
             MPAYHS + +  Q VGN+A+LP++TQ RGPAP     E DII+E+LYYFKANVFFRTYEI
Sbjct:     1 MPAYHSQIKEVRQQVGNMAILPLRTQVRGPAPSANI-ESDIIDESLYYFKANVFFRTYEI 59

Query:    61 KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
             KS+ DR+LIY+TLYITECLKKL +  +KAQGQ +MYSLA++KFD+PG+AGFPLN+VYAKP
Sbjct:    60 KSDVDRVLIYVTLYITECLKKLNRSTSKAQGQQDMYSLAISKFDIPGDAGFPLNAVYAKP 119

Query:   121 Q 121
             Q
Sbjct:   120 Q 120

GO:0003779 "actin binding" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

UNIPROTKB|E1C8Y3 ARPC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 82/123 (66%), Positives = 104/123 (84%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             MPAYHSTL D + + VGN+A+LPI++Q++GPAP+  T + DII+EA+YYFKANVFF+ YE
Sbjct:     1 MPAYHSTLMDSDTKLVGNMALLPIRSQFKGPAPR-ETKDTDIIDEAIYYFKANVFFKNYE 59

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC +K QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct:    60 IKNEADRTLIYITLYISECLKKLQKCNSKGQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query:   120 PQN 122
             P N
Sbjct:   120 PTN 122

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

UNIPROTKB|Q3T035 ARPC3 "Actin-related protein 2/3 complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 79/123 (64%), Positives = 105/123 (85%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct:     1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct:    60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query:   120 PQN 122
             P N
Sbjct:   120 PAN 122

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|O15145 ARPC3 "Actin-related protein 2/3 complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 79/123 (64%), Positives = 105/123 (85%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct:     1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct:    60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query:   120 PQN 122
             P N
Sbjct:   120 PAN 122

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

UNIPROTKB|B5APU8 ARPC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 79/123 (64%), Positives = 105/123 (85%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct:     1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct:    60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query:   120 PQN 122
             P N
Sbjct:   120 PAN 122

GO:0030027 "lamellipodium" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

FB|FBgn0065032 Arpc3B "Actin-related protein 2/3 complex, subunit 3B" [Drosophila melanogaster (taxid:7227)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 75/122 (61%), Positives = 103/122 (84%)

Query:     1 MPAYHSTLTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
             MPA+HS + DF   VGN+A+LP++TQ RGPAP       DII+E+LY++K+N+FFRTYE+
Sbjct:     1 MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDI-PNDIIDESLYFWKSNIFFRTYEV 59

Query:    61 KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
             KSE DR+LIYITLYITECLK+L +C +K+QGQ E+Y+LA+++FD+PG+AGFPLN +Y KP
Sbjct:    60 KSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAISRFDIPGDAGFPLNGIYTKP 119

Query:   121 QN 122
             ++
Sbjct:   120 ED 121

GO:0007015 "actin filament organization" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS;NAS

GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS

GO:0003779 "actin binding" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

MGI|MGI:1928375 Arpc3 "actin related protein 2/3 complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 77/121 (63%), Positives = 104/121 (85%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             MPAYHS+L D + + +GN+A+LP+++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct:     1 MPAYHSSLMDPDTKLIGNMALLPLRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct:    60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query:   120 P 120
             P
Sbjct:   120 P 120

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0030027 "lamellipodium" evidence=IDA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|J9P309 LOC100856747 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 78/123 (63%), Positives = 104/123 (84%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct:     1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+  +  F +PGE GFPLN++YAK
Sbjct:    60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTPGITNFPIPGEPGFPLNAIYAK 119

Query:   120 PQN 122
             P N
Sbjct:   120 PAN 122

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

ZFIN|ZDB-GENE-040625-107 arpc3 "actin related protein 2/3 complex, subunit 3" [Danio rerio (taxid:7955)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 79/123 (64%), Positives = 102/123 (82%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             MPAYHS L D + + VGN+A+LP+KTQ++GPA +  T + DII+EA+YYFKANVFF+ YE
Sbjct:     1 MPAYHSALMDADTKLVGNMALLPLKTQFKGPAAR-ETKDTDIIDEAIYYFKANVFFKNYE 59

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC ++ QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct:    60 IKNEADRTLIYITLYISECLKKLQKCSSRGQGEKEMYTLGITNFPIPGEPGFPLNAMYAK 119

Query:   120 PQN 122
             P +
Sbjct:   120 PSS 122

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E2R985 E2R985 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 77/123 (62%), Positives = 104/123 (84%)

Query:     1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
             + AYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct:    26 LQAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 84

Query:    60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
             IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct:    85 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 144

Query:   120 PQN 122
             P N
Sbjct:   145 PAN 147

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T035	ARPC3_BOVIN	No assigned EC number	0.6422	0.4600	0.6797	yes	N/A
O15145	ARPC3_HUMAN	No assigned EC number	0.6422	0.4600	0.6797	yes	N/A
Q9Y7J4	ARPC3_SCHPO	No assigned EC number	0.5121	0.4486	0.6781	yes	N/A
Q9JM76	ARPC3_MOUSE	No assigned EC number	0.6363	0.4524	0.6685	yes	N/A
Q9XWV3	ARPC3_CAEEL	No assigned EC number	0.5433	0.4562	0.6557	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	263
pfam04062	175	pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa)	2e-71
pfam04062	175	pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa)	2e-58

>gnl|CDD|217867 pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa) subunit

 Score =  216 bits (553), Expect = 2e-71
 Identities = 72/124 (58%), Positives = 94/124 (75%), Gaps = 2/124 (1%)

Query: 1   MPAYHSTLTDF--NQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTY 58
           MPAYHST  D    + VGN+A+LP++T++RGPAP   + + DII+EAL  F+ANVFFR +
Sbjct: 1   MPAYHSTFLDEPSVRLVGNMALLPLRTKFRGPAPTPDSEDYDIIDEALDLFRANVFFRNF 60

Query: 59  EIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYA 118
           EIK  ADR+LIY  LYI+ECLKKLQKC +K + + E+ +LAL  F +PG+ GFPLNS+YA
Sbjct: 61  EIKGPADRVLIYGILYISECLKKLQKCMSKREAEKELNNLALDNFAIPGDPGFPLNSLYA 120

Query: 119 KPQN 122
            P N
Sbjct: 121 PPAN 124

The seven component ARP2/3 actin-organising complex is involved in actin assembly and function. Length = 175

>gnl|CDD|217867 pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa) subunit

 Score =  183 bits (466), Expect = 2e-58
 Identities = 60/113 (53%), Positives = 82/113 (72%), Gaps = 5/113 (4%)

Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
           K  + R  IY    I  CLKKLQKC +K + + E+ +LAL  F +PG+ GFPLNS+YA P
Sbjct: 63  KGPADRVLIYGILYISECLKKLQKCMSKREAEKELNNLALDNFAIPGDPGFPLNSLYAPP 122

Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 257
            ++ EA+L++ YL Q+RQE  +R+ ERV+   DGKPSKWWLCF+K++FM+KSL
Sbjct: 123 ANRQEAELLRQYLQQLRQELAIRLLERVYADEDGKPSKWWLCFTKRKFMNKSL 175

The seven component ARP2/3 actin-organising complex is involved in actin assembly and function. Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
PF04062	175	P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; In	100.0
KOG3155|consensus	173		100.0
PF04062	175	P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; In	99.85
KOG3155|consensus	173		99.79
PF09254	189	Endonuc-FokI_C: Restriction endonuclease FokI, C t	85.43
cd00126	36	PAH Pancreatic Hormone domain, a regulator of panc	80.12

>PF04062 P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; InterPro: IPR007204 The Arp2/3 complex is a seven-protein assembly that is critical for actin nucleation and branching in cells

Probab=100.00  E-value=7.8e-88  Score=579.25  Aligned_cols=173  Identities=63%  Similarity=1.179  Sum_probs=125.2

Q ss_pred             CCCccccCCCCC--ceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHH
Q psy16823          1 MPAYHSTLTDFN--QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITEC   78 (263)
Q Consensus         1 mpayhS~~~~~~--~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~c   78 (263)
                      ||||||+|++..  +.|||||||||||++|||||+.+++++|||||||+|||||||||||||||+|||+|||+||||+||
T Consensus         1 MPAYHS~f~~~~~~~~iGn~~lLPlrt~~rGPAp~~~~~~~DIIDEaL~~FraNvfFrnfeIKg~aDR~LIYltLyi~eC   80 (175)
T PF04062_consen    1 MPAYHSSFNDDESVRLIGNMALLPLRTKFRGPAPRPDDSDYDIIDEALYLFRANVFFRNFEIKGPADRLLIYLTLYISEC   80 (175)
T ss_dssp             ----------TT--EEETTEEE--B--SS-SS--B--SSS--HHHHHHHHHHHHTT-S-----SHHCHHHHHHHHHHHCH
T ss_pred             CCCccccccCCCCceeEcCeeeeecccCCCCCCCCCCCCcccHHHHHHHHHHhhhhhhccccCCCCceEeeeHHHHHHHH
Confidence            999999999965  899999999999999999998778999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceeh
Q psy16823         79 LKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYV  158 (263)
Q Consensus        79 Lkkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILF  158 (263)
                      ||||++|++++||+|+|+++|+++|+                                                      
T Consensus        81 Lkkl~~~~sk~ea~k~l~~lal~~F~------------------------------------------------------  106 (175)
T PF04062_consen   81 LKKLQKCTSKNEAQKELYNLALDNFP------------------------------------------------------  106 (175)
T ss_dssp             HHHHTT-SSHHHHHHHHHHHHHS---------------------------------------------------------
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcCC------------------------------------------------------
Confidence            99999999999999999999999999                                                      


Q ss_pred             hhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy16823        159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG  238 (263)
Q Consensus       159 IsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~  238 (263)
                                                    +|||++|||+|.+..|.|.+|+|.||+||+|+|||+|.|||||||.+++|
T Consensus       107 ------------------------------iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqElg~RL~ervf~~~~~  156 (175)
T PF04062_consen  107 ------------------------------IPGDPGFPLNSLYAKPANRQEADLLRQYLTQLRQELGLRLLERVFDDGDG  156 (175)
T ss_dssp             -------------------------------TTSTT-TTTTTS---SSHHHHHHHHHHHHHHHHHHCCCCCHHHB-SSSS
T ss_pred             ------------------------------CCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence                                          77777777788888888999999999999999999999999999999899


Q ss_pred             CCCeeeecccccccccccc
Q psy16823        239 KPSKWWLCFSKKRFMDKSL  257 (263)
Q Consensus       239 ~psKwWl~f~kr~Fm~ksl  257 (263)
                      +||||||||+|||||||||
T Consensus       157 ~psKwW~~FaKRkFM~KsL  175 (175)
T PF04062_consen  157 KPSKWWMCFAKRKFMNKSL  175 (175)
T ss_dssp             -B-HCCCCCCC--GGG--T
T ss_pred             CCChhhhhhhhhccccccC
Confidence            9999999999999999997

Arp2/3 nucleates new actin filaments while bound to existing filaments, thus creating a branched network []. The complex consists of Arp2, Arp3, p41, p34, p21, p20 and p16. Subunits p34 and p20 constitute the core of the structure, with the remaining subunits located peripherally []. This entry describes the p21 subunit. Proteins such as WASp and Scar1 may mediate receptor signalling through interactions with p21-Arc, resulting in the activation of Arc2/3 complex activity [].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_J 2P9P_E 2P9N_E 2P9K_E 1TYQ_E 1U2V_E 3RSE_E 2P9U_E 3DXM_E 2P9S_E ....

>KOG3155|consensus

Probab=100.00  E-value=4.5e-83  Score=547.05  Aligned_cols=172  Identities=63%  Similarity=1.190  Sum_probs=166.0

Q ss_pred             CCCccccCCCCC-ceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHHH
Q psy16823          1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECL   79 (263)
Q Consensus         1 mpayhS~~~~~~-~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~cL   79 (263)
                      ||||||+|.|.. ..+||||+|||+|++|||||+. +.+.|||||||+|||||||||||||||||||+|||+||||+|||
T Consensus         1 MpAyhSsf~d~~~~~~~n~alLpl~s~fkGPAp~~-~~d~DIvDEai~yFkaNvFFknfEIK~~ADRtLIYitlyIseCL   79 (173)
T KOG3155|consen    1 MPAYHSSFMDPDNKLIGNMALLPIRSQFKGPAPRE-TKDTDIVDEAIYYFKANVFFKNFEIKNPADRTLIYITLYISECL   79 (173)
T ss_pred             CCcccccccCcCCCccCcceeccchhhccCCCCCc-cCccchHHHHHHHhhcccceecceecCccceeEEEeehHHHHHH
Confidence            999999999954 6789999999999999999985 58899999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceehh
Q psy16823         80 KKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVI  159 (263)
Q Consensus        80 kkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILFI  159 (263)
                      ||||+|.++.||+|+||+||+++|+                                                       
T Consensus        80 kkLqkc~sk~qg~k~l~~lal~~~~-------------------------------------------------------  104 (173)
T KOG3155|consen   80 KKLQKCNSKSQGEKELYNLALENFP-------------------------------------------------------  104 (173)
T ss_pred             HHHHcccchhHHHHHHHHhhhhccc-------------------------------------------------------
Confidence            9999999999999999999999998                                                       


Q ss_pred             hHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16823        160 RNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGK  239 (263)
Q Consensus       160 sdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~  239 (263)
                                                   +||++||||||.++-|.|++|+|.||+|++|+|||+|.|||++||.+++++
T Consensus       105 -----------------------------iPGe~GFPln~ly~~p~s~~~~e~mr~Yl~Q~RqE~~~RL~~~v~~~~~d~  155 (173)
T KOG3155|consen  105 -----------------------------IPGEPGFPLNALYTLPASKQDAELMRAYLQQFRQETGLRLLEKVYDTPKDK  155 (173)
T ss_pred             -----------------------------CCCCCCCCchhhhcCCCCCCchHHHHHHHHHHHHHhhhhHHHHhcCCCCCC
Confidence                                         888889999999999999999999999999999999999999999999999


Q ss_pred             CCeeeecccccccccccc
Q psy16823        240 PSKWWLCFSKKRFMDKSL  257 (263)
Q Consensus       240 psKwWl~f~kr~Fm~ksl  257 (263)
                      |||||+||+|||||||||
T Consensus       156 PsKwW~cF~kRrFMnksl  173 (173)
T KOG3155|consen  156 PSKWWLCFAKRRFMNKSL  173 (173)
T ss_pred             cchhHHHHHHHHhhhccC
Confidence            999999999999999997

>PF04062 P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; InterPro: IPR007204 The Arp2/3 complex is a seven-protein assembly that is critical for actin nucleation and branching in cells

Probab=99.85  E-value=2.4e-22  Score=173.95  Aligned_cols=77  Identities=34%  Similarity=0.512  Sum_probs=59.9

Q ss_pred             eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823        139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL  212 (263)
Q Consensus       139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~  212 (263)
                      ||||||||   ||||||     ||||++||+||++|+++.||+|+|+++||        ++|+|||++|||||+- ++..
T Consensus        55 vfFrnfeI---Kg~aDR~LIYltLyi~eCLkkl~~~~sk~ea~k~l~~lal--------~~F~iPGd~gFpLn~~y~~P~  123 (175)
T PF04062_consen   55 VFFRNFEI---KGPADRLLIYLTLYISECLKKLQKCTSKNEAQKELYNLAL--------DNFPIPGDPGFPLNSLYAKPA  123 (175)
T ss_dssp             TT-S--------SHHCHHHHHHHHHHHCHHHHHTT-SSHHHHHHHHHHHHH--------S----TTSTT-TTTTTS---S
T ss_pred             hhhhcccc---CCCCceEeeeHHHHHHHHHHHhccCCCHHHHHHHHHHHHH--------hcCCCCCCCCCCccccccCCC
Confidence            89999999   999999     99999999999999999999999999999        5999999999999999 7788


Q ss_pred             HHHHHHHHHHHHHH
Q psy16823        213 MKNYLTQVRQETGL  226 (263)
Q Consensus       213 ~r~Yl~q~Rqe~~~  226 (263)
                      -++-.+++||++.+
T Consensus       124 ~~~e~d~lR~Yl~Q  137 (175)
T PF04062_consen  124 NRQEADLLRQYLTQ  137 (175)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHH
Confidence            99999999999986

Arp2/3 nucleates new actin filaments while bound to existing filaments, thus creating a branched network []. The complex consists of Arp2, Arp3, p41, p34, p21, p20 and p16. Subunits p34 and p20 constitute the core of the structure, with the remaining subunits located peripherally []. This entry describes the p21 subunit. Proteins such as WASp and Scar1 may mediate receptor signalling through interactions with p21-Arc, resulting in the activation of Arc2/3 complex activity [].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_J 2P9P_E 2P9N_E 2P9K_E 1TYQ_E 1U2V_E 3RSE_E 2P9U_E 3DXM_E 2P9S_E ....

>KOG3155|consensus

Probab=99.79  E-value=2.6e-20  Score=160.81  Aligned_cols=84  Identities=33%  Similarity=0.509  Sum_probs=72.0

Q ss_pred             eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823        139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL  212 (263)
Q Consensus       139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~  212 (263)
                      ||||||||   ||||||     |||||+||+||++|+++.+|+|+++++||        ++|+|||++|||+|.- ....
T Consensus        53 vFFknfEI---K~~ADRtLIYitlyIseCLkkLqkc~sk~qg~k~l~~lal--------~~~~iPGe~GFPln~ly~~p~  121 (173)
T KOG3155|consen   53 VFFKNFEI---KNPADRTLIYITLYISECLKKLQKCNSKSQGEKELYNLAL--------ENFPIPGEPGFPLNALYTLPA  121 (173)
T ss_pred             cceeccee---cCccceeEEEeehHHHHHHHHHHcccchhHHHHHHHHhhh--------hcccCCCCCCCCchhhhcCCC
Confidence            89999999   999999     89999999999999999999999999998        6999999999999987 4455


Q ss_pred             HHHHHHHHHHHHHH---HHHHHhc
Q psy16823        213 MKNYLTQVRQETGL---RVCERVF  233 (263)
Q Consensus       213 ~r~Yl~q~Rqe~~~---Rl~erv~  233 (263)
                      -++-.+-+|+++-+   ++.-|+.
T Consensus       122 s~~~~e~mr~Yl~Q~RqE~~~RL~  145 (173)
T KOG3155|consen  122 SKQDAELMRAYLQQFRQETGLRLL  145 (173)
T ss_pred             CCCchHHHHHHHHHHHHHhhhhHH
Confidence            55666777766654   5555554

>PF09254 Endonuc-FokI_C: Restriction endonuclease FokI, C terminal; InterPro: IPR015334 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=85.43  E-value=0.64  Score=41.92  Aligned_cols=37  Identities=24%  Similarity=0.565  Sum_probs=24.2

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecccc
Q psy16823        202 AKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSK  249 (263)
Q Consensus       202 gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~psKwWl~f~k  249 (263)
                      |++++-..+|.|-.|+++.|..           ++.-.|+|||-+|.+
T Consensus        84 GYsl~i~q~DeM~RYI~~n~~R-----------d~~~npnkWWe~f~~  120 (189)
T PF09254_consen   84 GYSLPISQADEMIRYIEENQER-----------DEKRNPNKWWENFPE  120 (189)
T ss_dssp             -B---HHHHHHHHHHHHHHHH-------------TTTSTT-GGGGS-T
T ss_pred             CcCCCcccHHHHHHHHHHHhcc-----------cccCCCchhHHhccc
Confidence            4677778899999999988753           234469999999987

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C-terminal domain of FokI restriction endonucleases, which adopts a structure consisting of an alpha/beta/alpha core containing a five-stranded beta-sheet. FokI recognises the double-stranded DNA sequence 5'-GGATG-3' and cleave DNA phosphodiester groups 9 base pairs away on this strand and 13 base pairs away on the complementary strand [, ].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.

>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers

Probab=80.12  E-value=3.6  Score=28.43  Aligned_cols=28  Identities=21%  Similarity=0.406  Sum_probs=21.5

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823        199 SVYAKPQSQNEADLMKNYLTQVRQETGL  226 (263)
Q Consensus       199 G~~gFPLN~~E~~~~r~Yl~q~Rqe~~~  226 (263)
                      ..+..|.+.+-.|.|++|+++||+++..
T Consensus         3 ~~P~~Pg~~a~~eel~~Y~~~L~~Yinl   30 (36)
T cd00126           3 SKPENPGDDASPEELRQYLAALREYINL   30 (36)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3444565666689999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	263
1k8k_E	178	Crystal Structure Of Arp23 COMPLEX Length = 178		4e-44
1k8k_E	178	Crystal Structure Of Arp23 COMPLEX Length = 178		1e-35
3dwl_E	174	Crystal Structure Of Fission Yeast Arp2/3 Complex L		3e-28
3dwl_E	174	Crystal Structure Of Fission Yeast Arp2/3 Complex L		5e-22

>pdb|1K8K|E Chain E, Crystal Structure Of Arp23 COMPLEX Length = 178

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 105/123 (85%), Gaps = 2/123 (1%)
Query: 1   MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
           MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct: 1   MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59
Query: 60  IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
           IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 120 PQN 122
           P N
Sbjct: 120 PAN 122

>pdb|1K8K|E Chain E, Crystal Structure Of Arp23 COMPLEX Length = 178

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 91/118 (77%), Gaps = 5/118 (4%)
Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
           KNE+ R  IY+   I  CLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAKP
Sbjct: 61  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQ 262
            ++ E ++M+ YL Q+RQETGLR+CE+VF+  + KPSKWW CF K++FM+KSL+  GQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178

>pdb|3DWL|E Chain E, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 174

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 5/123 (4%)
Query: 1   MPAYHST---LTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRT 57
           MPAYHS+   LTD     GNIAMLP+KT++RGPA      + DII+E +  F+AN FFR 
Sbjct: 1   MPAYHSSFLSLTDV-PTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRN 59
Query: 58  YEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVY 117
           +EIK  ADR LIY TL+I+ECL ++     +   + ++ SLAL  F +PG AGFPLN++Y
Sbjct: 60  FEIKGPADRTLIYGTLFISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALY 118
Query: 118 AKP 120
           A P
Sbjct: 119 APP 121

>pdb|3DWL|E Chain E, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 174

Iteration: 1
 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLT 218
           I  CL ++     +   + ++ SLAL  F +PG AGFPLN++YA P S  +A++M+ YLT
Sbjct: 77  ISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLT 135
Query: 219 QVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 257
           Q RQE   R+   V+ T    PSKWW CFSK+RFM+K+L
Sbjct: 136 QFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKAL 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
1k8k_E	178	P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-	2e-61
1k8k_E	178	P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-	1e-55
3dwl_E	174	Actin-related protein 2/3 complex subunit 3; prope	2e-59
3dwl_E	174	Actin-related protein 2/3 complex subunit 3; prope	1e-49
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E Length = 178

 Score =  190 bits (485), Expect = 2e-61
 Identities = 79/123 (64%), Positives = 105/123 (85%), Gaps = 2/123 (1%)

Query: 1   MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
           MPAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YE
Sbjct: 1   MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59

Query: 60  IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
           IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAK
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query: 120 PQN 122
           P N
Sbjct: 120 PAN 122

>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E Length = 178

 Score =  175 bits (446), Expect = 1e-55
 Identities = 61/107 (57%), Positives = 83/107 (77%)

Query: 156 IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKN 215
              I  CLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAKP ++ E ++M+ 
Sbjct: 72  TLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRA 131

Query: 216 YLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQ 262
           YL Q+RQETGLR+CE+VF+  + KPSKWW CF K++FM+KSL+  GQ
Sbjct: 132 YLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178

>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 174

 Score =  185 bits (471), Expect = 2e-59
 Identities = 60/124 (48%), Positives = 81/124 (65%), Gaps = 3/124 (2%)

Query: 1   MPAYHSTLTDFN--QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTY 58
           MPAYHS+          GNIAMLP+KT++RGPA      + DII+E +  F+AN FFR +
Sbjct: 1   MPAYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNF 60

Query: 59  EIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYA 118
           EIK  ADR LIY TL+I+ECL ++     +   + ++ SLAL  F +PG AGFPLN++YA
Sbjct: 61  EIKGPADRTLIYGTLFISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALYA 119

Query: 119 KPQN 122
            P +
Sbjct: 120 PPLS 123

>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 174

 Score =  160 bits (406), Expect = 1e-49
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 156 IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKN 215
              I  CL ++     +   + ++ SLAL  F +PG AGFPLN++YA P S  +A++M+ 
Sbjct: 74  TLFISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRT 132

Query: 216 YLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 257
           YLTQ RQE   R+   V+ T    PSKWW CFSK+RFM+K+L
Sbjct: 133 YLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKAL 174

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 44/308 (14%), Positives = 81/308 (26%), Gaps = 98/308 (31%)

Query: 20  MLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECL 79
           M PIKT+ R P+       +  IE+    +  N  F  Y +     RL  Y+ L   + L
Sbjct: 95  MSPIKTEQRQPSMM----TRMYIEQRDRLYNDNQVFAKYNVS----RLQPYLKL--RQAL 144

Query: 80  KKLQKCP------------------------TKAQGQNEMYSLALAKFDLPGEAGFPLNS 115
            +L+                            + +   +++ L L   + P      L  
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 116 VYAK---------------PQNL---------LFKAKKLKEA-----NGYKFVWVRD--- 143
           +  +                  +         L K+K  +       N    V       
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQNAKAWN 260

Query: 144 -----CKIMIRKNESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLAL-AKF------DLPG 191
                CKI++          +             +         +L  K+      DLP 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 192 EA--GFPLN-SVYAKPQSQNEADLMKNY--LTQVRQETGLRVCERVFNTPDGKPSKWWLC 246
           E     P   S+ A+   ++      N+  +   +  T +     V    +         
Sbjct: 321 EVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--------- 370

Query: 247 FSKKRFMD 254
             +K F  
Sbjct: 371 -YRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
1k8k_E	178	P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-	100.0
3dwl_E	174	Actin-related protein 2/3 complex subunit 3; prope	100.0
1k8k_E	178	P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-	99.86
3dwl_E	174	Actin-related protein 2/3 complex subunit 3; prope	99.82
1f8p_A	37	Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP	82.38

>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E

Probab=100.00  E-value=2.1e-89  Score=589.10  Aligned_cols=177  Identities=62%  Similarity=1.194  Sum_probs=165.0

Q ss_pred             CCCccccCCCC-CceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHHH
Q psy16823          1 MPAYHSTLTDF-NQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECL   79 (263)
Q Consensus         1 mpayhS~~~~~-~~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~cL   79 (263)
                      ||||||+|++. .+.|||||||||||++|||||+ .++++|||||||+|||||||||||||||+|||+|||+||||+|||
T Consensus         1 MPAYHS~f~~~~~~~vgn~~lLPlrt~~rGPAp~-~~~~~DIiDEal~~FraNvfFrnfeIkg~ADR~LIYltlyi~eCL   79 (178)
T 1k8k_E            1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL   79 (178)
T ss_dssp             -CCCCCCCCCTTCEEETTEEECCBCCSSCSSCCB-CCSSCCHHHHHHHHHHHHTTCSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcccchhcccccceEcceeEEeeeccCCCCCCC-CCCccchHHHHHHHHHhhhhhhccccCCCCceEeeeHHHHHHHHH
Confidence            99999999985 4689999999999999999998 689999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceehh
Q psy16823         80 KKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVI  159 (263)
Q Consensus        80 kkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILFI  159 (263)
                      |||++|++++||+|+|+++|+++|+                                                       
T Consensus        80 kkl~~~~~k~ea~k~l~~lal~~F~-------------------------------------------------------  104 (178)
T 1k8k_E           80 KKLQKCNSKSQGEKEMYTLGITNFP-------------------------------------------------------  104 (178)
T ss_dssp             HHHTSCCSHHHHHHHHHHHHHSCCC-------------------------------------------------------
T ss_pred             HHhhcCCCHHHHHHHHHHHhhhcCC-------------------------------------------------------
Confidence            9999999999999999999999999                                                       


Q ss_pred             hHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16823        160 RNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGK  239 (263)
Q Consensus       160 sdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~  239 (263)
                                                   +|||++|||+|.+..|.|.+|+|+||+||+|+|||+|.|||||||.+++|+
T Consensus       105 -----------------------------iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~~  155 (178)
T 1k8k_E          105 -----------------------------IPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDK  155 (178)
T ss_dssp             -----------------------------CTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSSSC
T ss_pred             -----------------------------CCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                                         777777777888888999999999999999999999999999999988999


Q ss_pred             CCeeeecccccccccccccCCCC
Q psy16823        240 PSKWWLCFSKKRFMDKSLTALGQ  262 (263)
Q Consensus       240 psKwWl~f~kr~Fm~ksl~~~g~  262 (263)
                      ||||||||+|||||||||++|||
T Consensus       156 psKwWl~FaKRkFM~ksls~pg~  178 (178)
T 1k8k_E          156 PSKWWTCFVKRQFMNKSLSGPGQ  178 (178)
T ss_dssp             BCHHHHTTTTCCGGGCCCC----
T ss_pred             CCccceeehhhhhhccccCCCCC
Confidence            99999999999999999999997

>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.5e-87  Score=570.97  Aligned_cols=172  Identities=51%  Similarity=0.922  Sum_probs=62.9

Q ss_pred             CCCccccCCCC--CceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHH
Q psy16823          1 MPAYHSTLTDF--NQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITEC   78 (263)
Q Consensus         1 mpayhS~~~~~--~~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~c   78 (263)
                      ||||||+|++.  .+.|||||+|||||++|||||+.+++++|||||||+|||||||||||||||+|||+|||+||||+||
T Consensus         1 MPAYHS~f~~~~~~~~iGn~~lLPlrt~~rGPA~~~~~~~~DIiDEal~~FrANvfFrnfeIkg~ADR~LIYltlyi~~C   80 (174)
T 3dwl_E            1 MPAYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISEC   80 (174)
T ss_dssp             -------------------------------------------CHHHHHHHHHHTTCCCC-----CTHHHHHHHHHHHSC
T ss_pred             CCCccccccCCCcceeEccceeeeecccCCCCCCCCCCCCcChHHHHHHHHHhhhhhhccccCCCCceeeehHHHHHHHH
Confidence            99999999986  4899999999999999999999778889999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceeh
Q psy16823         79 LKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYV  158 (263)
Q Consensus        79 Lkkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILF  158 (263)
                      |+||++| +++||+|+|+++|+++|+                                                      
T Consensus        81 Lkkl~~~-sk~ea~k~l~~lal~~F~------------------------------------------------------  105 (174)
T 3dwl_E           81 LGRVNGL-NYRDAERQLNSLALENFS------------------------------------------------------  105 (174)
T ss_dssp             C------------CCCCC--------------------------------------------------------------
T ss_pred             HHHHhcc-CHHHHHHHHHHHHHhcCC------------------------------------------------------
Confidence            9999999 999999999999999999                                                      


Q ss_pred             hhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy16823        159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG  238 (263)
Q Consensus       159 IsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~  238 (263)
                                                    +|||++|||+|.+..|.|.+|+|.||+||+|+|||+|.|||||||++++|
T Consensus       106 ------------------------------iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~  155 (174)
T 3dwl_E          106 ------------------------------IPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKD  155 (174)
T ss_dssp             -------------------------------------------------------------CCGGGTTTTTC--------
T ss_pred             ------------------------------CCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence                                          67777777777777888999999999999999999999999999999999


Q ss_pred             CCCeeeecccccccccccc
Q psy16823        239 KPSKWWLCFSKKRFMDKSL  257 (263)
Q Consensus       239 ~psKwWl~f~kr~Fm~ksl  257 (263)
                      +||||||||+|||||||||
T Consensus       156 kpsKwWl~F~KRkFM~ksL  174 (174)
T 3dwl_E          156 HPSKWWTCFSKRRFMNKAL  174 (174)
T ss_dssp             ---CTTSGGGGCCGGGC--
T ss_pred             CccHHHHHHHHHhhhcccC
Confidence            9999999999999999997

>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E

Probab=99.86  E-value=6.4e-23  Score=176.73  Aligned_cols=84  Identities=33%  Similarity=0.505  Sum_probs=78.3

Q ss_pred             eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823        139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL  212 (263)
Q Consensus       139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~  212 (263)
                      ||||||||   ||||||     ||||++||+||++|+++.||+|+++++||        ++|+|||++|||+|+- ++..
T Consensus        53 vfFrnfeI---kg~ADR~LIYltlyi~eCLkkl~~~~~k~ea~k~l~~lal--------~~F~iPGd~gFpLn~~y~~P~  121 (178)
T 1k8k_E           53 VFFKNYEI---KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGI--------TNFPIPGEPGFPLNAIYAKPA  121 (178)
T ss_dssp             TTCSCCCC---CSHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHH--------SCCCCTTSTTCTTTTTSCCCS
T ss_pred             hhhhcccc---CCCCceEeeeHHHHHHHHHHHhhcCCCHHHHHHHHHHHhh--------hcCCCCCCCCCCccccccCCC
Confidence            89999999   999999     99999999999999999999999999999        5999999999999997 8889


Q ss_pred             HHHHHHHHHHHHHH---HHHHHhc
Q psy16823        213 MKNYLTQVRQETGL---RVCERVF  233 (263)
Q Consensus       213 ~r~Yl~q~Rqe~~~---Rl~erv~  233 (263)
                      -++..+++||++.+   ++..|+.
T Consensus       122 ~~~e~d~lR~Yl~QlRqEl~~RL~  145 (178)
T 1k8k_E          122 NKQEDEVMRAYLQQLRQETGLRLC  145 (178)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999886   5666654

>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.82  E-value=2.8e-22  Score=172.31  Aligned_cols=83  Identities=19%  Similarity=0.302  Sum_probs=25.4

Q ss_pred             eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823        139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL  212 (263)
Q Consensus       139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~  212 (263)
                      ||||||||   ||||||     ||||++||+||++| ++.||+|+++++||        ++|+|||++|||+|+- +...
T Consensus        55 vfFrnfeI---kg~ADR~LIYltlyi~~CLkkl~~~-sk~ea~k~l~~lal--------~~F~iPGd~gFpLn~~y~~P~  122 (174)
T 3dwl_E           55 CFFRNFEI---KGPADRTLIYGTLFISECLGRVNGL-NYRDAERQLNSLAL--------ENFSIPGSAGFPLNALYAPPL  122 (174)
T ss_dssp             TTCCCC--------CTHHHHHHHHHHHSCC------------CCCCC---------------------------------
T ss_pred             hhhhcccc---CCCCceeeehHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH--------hcCCCCCCCCCCccccccCCC
Confidence            89999999   999999     99999999999999 99999999999998        5999999999999999 7789


Q ss_pred             HHHHHHHHHHHHHH---HHHHHhc
Q psy16823        213 MKNYLTQVRQETGL---RVCERVF  233 (263)
Q Consensus       213 ~r~Yl~q~Rqe~~~---Rl~erv~  233 (263)
                      -++-.+++||++.+   ++..|+.
T Consensus       123 ~~~e~d~lR~Yl~QlRqEl~~RL~  146 (174)
T 3dwl_E          123 SPQDAEIMRTYLTQFRQELAYRLL  146 (174)
T ss_dssp             --------------CCGGGTTTTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999986   5555554

>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A

Probab=82.38  E-value=1.1  Score=30.21  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=24.2

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823        198 NSVYAKPQSQNEADLMKNYLTQVRQETGL  226 (263)
Q Consensus       198 PG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~  226 (263)
                      |..+..|-+.+..|.|++|.++||+++.+
T Consensus         2 P~kP~~Pg~~a~pEela~Y~~~Lr~Yinl   30 (37)
T 1f8p_A            2 PSKPDNPGEDAPAEDLARYYSALRHYINL   30 (37)
T ss_dssp             CCCCCCCCSSCTTTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            55566777788889999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1k8ke_	174	a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3	1e-63
d1k8ke_	174	a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3	3e-54

>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]} Length = 174

class: All alpha proteins
fold: Arp2/3 complex 21 kDa subunit ARPC3
superfamily: Arp2/3 complex 21 kDa subunit ARPC3
family: Arp2/3 complex 21 kDa subunit ARPC3
domain: Arp2/3 complex 21 kDa subunit ARPC3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  195 bits (497), Expect = 1e-63
 Identities = 78/122 (63%), Positives = 104/122 (85%), Gaps = 2/122 (1%)

Query: 2   PAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           PAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YEI
Sbjct: 1   PAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYEI 59

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           K+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAKP
Sbjct: 60  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 119

Query: 121 QN 122
            N
Sbjct: 120 AN 121

>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]} Length = 174

class: All alpha proteins
fold: Arp2/3 complex 21 kDa subunit ARPC3
superfamily: Arp2/3 complex 21 kDa subunit ARPC3
family: Arp2/3 complex 21 kDa subunit ARPC3
domain: Arp2/3 complex 21 kDa subunit ARPC3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  171 bits (434), Expect = 3e-54
 Identities = 65/114 (57%), Positives = 89/114 (78%), Gaps = 5/114 (4%)

Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
           KNE+ R  IY+   I  CLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAKP
Sbjct: 60  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 119

Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLT 258
            ++ E ++M+ YL Q+RQETGLR+CE+VF+  + KPSKWW CF K++FM+KSL+
Sbjct: 120 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLS 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1k8ke_	174	Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taur	100.0
d1k8ke_	174	Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taur	99.84

>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Arp2/3 complex 21 kDa subunit ARPC3
superfamily: Arp2/3 complex 21 kDa subunit ARPC3
family: Arp2/3 complex 21 kDa subunit ARPC3
domain: Arp2/3 complex 21 kDa subunit ARPC3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-85  Score=562.57  Aligned_cols=173  Identities=62%  Similarity=1.200  Sum_probs=164.5

Q ss_pred             CCccccCCCC-CceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHHHH
Q psy16823          2 PAYHSTLTDF-NQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLK   80 (263)
Q Consensus         2 payhS~~~~~-~~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~cLk   80 (263)
                      |||||+|.+. .++|||||||||||++|||||+ .++++|||||||+|||||||||||||||||||+|||+||||+|||+
T Consensus         1 PAyHS~f~~~~~~~vgn~~llPlrt~~rGPAp~-~~~~~DIIDEal~~FraN~fFrnfeik~~aDR~LIYltlyiseCL~   79 (174)
T d1k8ke_           1 PAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLK   79 (174)
T ss_dssp             CCCCCCCCCTTCEEETTEEECCBCCSSCSSCCB-CCSSCCHHHHHHHHHHHHTTCSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccCCCcceECcceeeeeeccccCCCCC-CCCcccHHHHHHHHHHhhHHhhccccCCccceeeeehHHHHHHHHH
Confidence            9999999874 4799999999999999999997 5678999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceehhh
Q psy16823         81 KLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIR  160 (263)
Q Consensus        81 kl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILFIs  160 (263)
                      ||++|++++||+|+|+++|+++|+                                                        
T Consensus        80 kl~~~~~~~~a~k~l~~lal~~f~--------------------------------------------------------  103 (174)
T d1k8ke_          80 KLQKCNSKSQGEKEMYTLGITNFP--------------------------------------------------------  103 (174)
T ss_dssp             HHTSCCSHHHHHHHHHHHHHSCCC--------------------------------------------------------
T ss_pred             HHhcCcCHHHHHHHHHHHHhhcCC--------------------------------------------------------
Confidence            999999999999999999999999                                                        


Q ss_pred             HHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16823        161 NCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKP  240 (263)
Q Consensus       161 dCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~p  240 (263)
                                                  +|||++|||+|.+..|.|++|+|+||+||+|+|||||.||+||||.+.+|+|
T Consensus       104 ----------------------------iPGd~gFpLn~~y~~P~~~~e~e~lR~Yl~Q~RqEl~~RL~ervy~~~~~~p  155 (174)
T d1k8ke_         104 ----------------------------IPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKP  155 (174)
T ss_dssp             ----------------------------CTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSSSCB
T ss_pred             ----------------------------CCCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence                                        7777788888888889999999999999999999999999999999889999


Q ss_pred             CeeeecccccccccccccC
Q psy16823        241 SKWWLCFSKKRFMDKSLTA  259 (263)
Q Consensus       241 sKwWl~f~kr~Fm~ksl~~  259 (263)
                      |||||||+|||||||||+|
T Consensus       156 sKwWl~FaKRkFM~KsLsg  174 (174)
T d1k8ke_         156 SKWWTCFVKRQFMNKSLSG  174 (174)
T ss_dssp             CHHHHTTTTCCGGGCCCC-
T ss_pred             CceeeeeeccccccccccC
Confidence            9999999999999999986

>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Arp2/3 complex 21 kDa subunit ARPC3
superfamily: Arp2/3 complex 21 kDa subunit ARPC3
family: Arp2/3 complex 21 kDa subunit ARPC3
domain: Arp2/3 complex 21 kDa subunit ARPC3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1.4e-22  Score=172.07  Aligned_cols=85  Identities=33%  Similarity=0.502  Sum_probs=79.7

Q ss_pred             eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823        139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL  212 (263)
Q Consensus       139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~  212 (263)
                      ||||||||   ||||||     ||||++||+||++|+++.+|+|+++++||        ++|+|||++|||+|+- +...
T Consensus        52 ~fFrnfei---k~~aDR~LIYltlyiseCL~kl~~~~~~~~a~k~l~~lal--------~~f~iPGd~gFpLn~~y~~P~  120 (174)
T d1k8ke_          52 VFFKNYEI---KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGI--------TNFPIPGEPGFPLNAIYAKPA  120 (174)
T ss_dssp             TTCSCCCC---CSHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHH--------SCCCCTTSTTCTTTTTSCCCS
T ss_pred             HHhhcccc---CCccceeeeehHHHHHHHHHHHhcCcCHHHHHHHHHHHHh--------hcCCCCCCCCCCcccccCCCC
Confidence            89999999   999999     99999999999999999999999999999        6999999999999999 7788


Q ss_pred             HHHHHHHHHHHHHH---HHHHHhcC
Q psy16823        213 MKNYLTQVRQETGL---RVCERVFN  234 (263)
Q Consensus       213 ~r~Yl~q~Rqe~~~---Rl~erv~~  234 (263)
                      -++..+++||++.+   +|..|+..
T Consensus       121 ~~~e~e~lR~Yl~Q~RqEl~~RL~e  145 (174)
T d1k8ke_         121 NKQEDEVMRAYLQQLRQETGLRLCE  145 (174)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987   77777763