Psyllid ID: psy16848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MPMPIMCLNFKQVHKSNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQVQQALS
Secondary Structure (PSIPRED)
cccccccccccEEEEccEEEEEEcccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccEEEEcccccHHHHHHHHHccccEEEEEcccHHHHcccHHHHccccHHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccccEEEcccccccccccccccccccccccHHHHHHHHHHccccEEEEccccHHHHHHHHHccccccccEEEEccccccccccccHHHHHHHHHHHccEEEEEccccccccccccccccccccccccEEEEEccHHHHHccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHHccEEEEccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHcccccccccccEEEEEEccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccEEEEEEccHHccHHHHHHHHHHccccEEEEccccHHHHHHHHHcccccEEEEEcccHHHHHHHHHHccccccEEEEEEEEEccccccccHHHHHHHHHHccEEEEEccEEEEEcccccccEEEccccHHHHcccccccEEEcccccHHHHHHHHHcccccEEEEEcccHHHHHHHHHHccccccEEEEEEEEEccccccccHHHHHHHHHHcccEEEEEcHEEEcccccccccccccccccccEEEEEccHHHHHccccEEEEccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHHcccEEEEccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccHHHHcHHHHHHcc
Coil and Loop (DISEMBL)
mpmpimclnfkqvhksnrvtcrlssvqykvpkggrkCLGEALEKfgtgaggtrnisgnslFHEKLEEDVAKLHQKEAGLVFTSCyvandstlftlgkmipglhyisdagnhaSMIQGIrnssapkiiyrhndvNHLTQVLEnmdvkipkLVAFETVhsmtgaicplkelcevshqhgaltfvDEVHAVglygehgagigerdgqlhnmdiisgtlvnpevAIHASMIQGirnssapkiiyrhndvNHLTQVLEnmdvkipkLVAFETVhsmtgaicplkelcevshqhgaltfvDEVHAVglygehgagigerdgqlhnmdiISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGfifttslpptvlAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIqigfpvehtpshiipikignpalnTKICDMLLkekghyvqpinyptvpvgeekirlaptpfhtrEMIDKFVTDLLAVWKsldlplsgltcAQVNILLFIILFHLILSQVQQALS
Flexible Loop (DISEMBL)
MPMPIMCLNFKqvhksnrvtcrlssvqykvpkggrKCLGEALEKfgtgaggtrniSGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILssqegvelRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPinyptvpvgeEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQVQQALS
Low Complexity Region (SEG)
MPMPIMCLNFKQVHKSNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNillfiilfhlilSQVQQALS
Disordered region (IsUnstruct)
****IMCLNFKQVHKSNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQ******
Disordered Region (DISOPRED)
*PMPI**LNFKQVHKSNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEG**LRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQV*QAL*
Disordered Region (DISEMBL)
MPMPIMCLNFKQVHKSNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQVQQALS
Disordered Region (DISPRO)
***********QVHKSNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQVQ***S
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPMPIMCLNFKQVHKSNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQVQQALS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
P22557	587	5-aminolevulinate synthas	yes	N/A	0.575	0.504	0.597	1e-103
Q63147	587	5-aminolevulinate synthas	yes	N/A	0.634	0.555	0.547	1e-102
Q5R557	587	5-aminolevulinate synthas	yes	N/A	0.575	0.504	0.594	1e-102
P08680	587	5-aminolevulinate synthas	yes	N/A	0.575	0.504	0.594	1e-102
Q9XT75	582	5-aminolevulinate synthas	N/A	N/A	0.575	0.508	0.584	1e-101
Q3ZC31	587	5-aminolevulinate synthas	yes	N/A	0.575	0.504	0.581	1e-100
Q9YHT4	583	5-aminolevulinate synthas	yes	N/A	0.529	0.466	0.600	1e-98
A6QLI6	647	5-aminolevulinate synthas	no	N/A	0.564	0.448	0.570	4e-98
P13195	642	5-aminolevulinate synthas	no	N/A	0.587	0.470	0.567	8e-98
P43090	582	5-aminolevulinate synthas	N/A	N/A	0.529	0.467	0.597	4e-97

>sp|P22557|HEM0_HUMAN 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Homo sapiens GN=ALAS2 PE=1 SV=2

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/296 (59%), Positives = 223/296 (75%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++LE  + KIPK+VAFETVH
Sbjct: 272 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFETVH 331

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GAICPL+ELC+VSHQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct: 332 SMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 391

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct: 392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V ++R  L+  G PV   PSHIIPI++GN ALN+K+CD+LL + G YVQ INYPTVP 
Sbjct: 452 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPR 511

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI 505
           GEE +RLAP+P H+ +M++ FV  LL  W ++ LPL  ++ A  N     + F L+
Sbjct: 512 GEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQDVSVAACNFCRRPVHFELM 567

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q63147|HEM0_RAT 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Rattus norvegicus GN=Alas2 PE=1 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/340 (54%), Positives = 234/340 (68%), Gaps = 14/340 (4%)

Query: 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM-DIISGTLVNPEVAIHAS 225
           +EL E+ H+  AL F     A              D  L  +  ++ G  +  +   HAS
Sbjct: 241 QELAELHHKDSALLFSSCFVA-------------NDSTLFTLAKLLPGCEIYSDAGNHAS 287

Query: 226 MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS 285
           MIQGIRNS A K ++RHND  HL ++LE  D K PK+VAFETVHSM GAICPL+ELC+V+
Sbjct: 288 MIQGIRNSGAVKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMDGAICPLEELCDVA 347

Query: 286 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFI 345
           HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGKAFG +GGYI  T++ +
Sbjct: 348 HQYGALTFVDEVHAVGLYGTRGAGIGERDGIMHKLDIISGTLGKAFGCVGGYIASTRDLV 407

Query: 346 DTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405
           D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ  V ++R  L+  GFP
Sbjct: 408 DMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGFP 467

Query: 406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE 465
           V   PSHIIPI++GN ALN+KICD+LL +   YVQ INYPTVP GEE +RLAP+P H+ +
Sbjct: 468 VIPCPSHIIPIRVGNAALNSKICDLLLAKHSIYVQAINYPTVPRGEELLRLAPSPHHSPQ 527

Query: 466 MIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI 505
           M++ FV  LL  W  + LPL  ++ A  N     + F L+
Sbjct: 528 MMENFVEKLLLAWTEVGLPLQDVSVAACNFCRRPVHFELM 567

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q5R557|HEM0_PONAB 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Pongo abelii GN=ALAS2 PE=1 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/296 (59%), Positives = 221/296 (74%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++LE  + KIPK+VAFE VH
Sbjct: 272 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFEAVH 331

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GAICPL+ELC+VSHQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct: 332 SMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 391

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct: 392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V ++R  L+  G PV   PSHIIPI++GN ALN+K+CD+LL + G YVQ INYPTVP 
Sbjct: 452 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPR 511

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI 505
           GEE +RLAP+P H+ +M++ FV  LL  W  + LPL  ++ A  N     + F L+
Sbjct: 512 GEELLRLAPSPHHSPQMMEDFVEKLLLAWTEVGLPLQDVSVAACNFCRRPVHFELM 567

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P08680|HEM0_MOUSE 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Mus musculus GN=Alas2 PE=1 SV=3

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/296 (59%), Positives = 220/296 (74%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           ++ G  +  +   HASMIQGIRNS A K ++RHND  HL ++LE  D K PK+VAFETVH
Sbjct: 272 LLPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVH 331

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct: 332 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGARGAGIGERDGIMHKLDIISGTLGK 391

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct: 392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V ++R  L+  GFPV   PSHIIPI++GN ALN+KICD+LL +   YVQ INYPTVP 
Sbjct: 452 RNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQAINYPTVPR 511

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI 505
           GEE +RLAP+P H+ +M++ FV  LL  W  + LPL  ++ A  N     + F L+
Sbjct: 512 GEELLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQDVSVAACNFCHRPVHFELM 567

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XT75|HEM0_DELLE 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Delphinapterus leucas GN=ALAS2 PE=2 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/296 (58%), Positives = 222/296 (75%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++L+  + + PK+VAFETVH
Sbjct: 267 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKKSNPETPKIVAFETVH 326

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct: 327 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 386

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct: 387 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 446

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V ++R  L+  G PV   PSHIIPI++G+ ALN++ICD+LL + G YVQ INYPTVP 
Sbjct: 447 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGDAALNSRICDLLLSKHGIYVQAINYPTVPR 506

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI 505
           GEE +RLAP+P H+ +M++ FV  LLA W  + LPL  ++ A  N     + F L+
Sbjct: 507 GEELLRLAPSPHHSPQMMEDFVEKLLAAWTEVGLPLQDVSIAACNFCRRPVHFELM 562

Delphinapterus leucas (taxid: 9749)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q3ZC31|HEM0_BOVIN 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Bos taurus GN=ALAS2 PE=2 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/296 (58%), Positives = 220/296 (74%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++L+  + + PK+VAFETVH
Sbjct: 272 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKKSNPETPKIVAFETVH 331

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct: 332 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 391

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct: 392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V ++R  L+  G PV   PSHIIPI++G+  LNT+ICD+LL + G YVQ INYPTVP 
Sbjct: 452 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGDAMLNTRICDLLLSKYGIYVQAINYPTVPR 511

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI 505
           GEE +RLAP+P H+ +M++ FV  LL  W  + LPL  ++ A  N     + F L+
Sbjct: 512 GEELLRLAPSPHHSPQMMEDFVEKLLEAWTEVGLPLQDISIAACNFCRRPVHFELM 567

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9YHT4|HEM0_DANRE 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Danio rerio GN=alas2 PE=2 SV=1

 Score =  360 bits (925), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 167/278 (60%), Positives = 213/278 (76%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           ++ G  +  ++  HASMIQGIRNS A + I+RHND +HL ++L   D   PK+VAFETVH
Sbjct: 267 MLPGCEIYSDMGNHASMIQGIRNSGAKRFIFRHNDASHLEELLSRSDPLTPKIVAFETVH 326

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GAICPL+ELC+V+H++GALTFVDEVHAVGLYG HGAG+GERD  +H +DI+SGTLGK
Sbjct: 327 SMDGAICPLEELCDVAHKYGALTFVDEVHAVGLYGAHGAGVGERDNVMHKIDIVSGTLGK 386

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGYI  T   +DT+RS+AAGFIFTTSLPP VLAGA E++R+L S EG  LR  HQ
Sbjct: 387 AFGCVGGYIASTAALVDTVRSFAAGFIFTTSLPPMVLAGALESVRVLKSDEGQALRRAHQ 446

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V ++R  L+  G PV + PSHIIPI++GN A N+++CD+LL++   YVQ INYPTVP 
Sbjct: 447 RNVKHMRQLLLDAGLPVVNCPSHIIPIRVGNAAKNSEVCDILLEKHNIYVQAINYPTVPR 506

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSG 487
           GEE +RLAP+PFH   M++ F   LL VW+ + LPL+G
Sbjct: 507 GEELLRLAPSPFHNPIMMNYFAEKLLDVWQEVGLPLNG 544

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|A6QLI6|HEM1_BOVIN 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Bos taurus GN=ALAS1 PE=2 SV=1

 Score =  358 bits (920), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 169/296 (57%), Positives = 215/296 (72%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           ++ G  +  +   HASMIQGIRNS  PK I+RHNDV+HL ++L+  D  +PK+VAFETVH
Sbjct: 333 MMPGCEIYSDAGNHASMIQGIRNSGVPKYIFRHNDVSHLRELLQRSDPAVPKIVAFETVH 392

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GA+CPL+ELC+V+H+ GA+TFVDEVHAVGLYG  G GIG+RDG +  MDIISGTLGK
Sbjct: 393 SMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGLQGGGIGDRDGVMPKMDIISGTLGK 452

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           A G +GGYI  T + IDT+RSYAAGFIFTTSLPP +LAGA E++RIL S EG  LR +HQ
Sbjct: 453 AIGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRILRSTEGRTLRRQHQ 512

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V  +R  L+  G PV H PSHIIP+++ + A NT++CD L+     YVQ INYPTVP 
Sbjct: 513 RNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAAKNTEVCDELMTRHNIYVQAINYPTVPR 572

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI 505
           GEE +R+APTP HT +M+  FV +LLA WK + L L   + A+ N     + F ++
Sbjct: 573 GEELLRIAPTPHHTPQMMSYFVDNLLATWKRVGLELKPHSSAECNFCRRPLHFEMM 628

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P13195|HEM1_RAT 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Rattus norvegicus GN=Alas1 PE=2 SV=2

 Score =  357 bits (917), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 172/303 (56%), Positives = 219/303 (72%), Gaps = 1/303 (0%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           ++ G  +  +   HASMIQGIRNS  PK I+RHNDVNHL ++L+  D  +PK+VAFETVH
Sbjct: 328 MMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVNHLRELLQRSDPSVPKIVAFETVH 387

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GA+CPL+ELC+V+H+ GA+TFVDEVHAVGLYG  G GIG+RDG +  MDIISGTLGK
Sbjct: 388 SMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGASGGGIGDRDGVMPKMDIISGTLGK 447

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGYI  T   IDT+RSYAAGFIFTTSLPP +LAGA E++RIL S EG  LR +HQ
Sbjct: 448 AFGCVGGYIASTSLLIDTVRSYAAGFIFTTSLPPMLLAGALESVRILKSNEGRALRRQHQ 507

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V  +R  L+  G PV H PSHIIP+++ + A NT+ICD L+     YVQ INYPTVP 
Sbjct: 508 RNVKLMRQMLMDAGLPVIHCPSHIIPVRVADAAKNTEICDELMTRHNIYVQAINYPTVPR 567

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLILSQV 509
           GEE +R+APTP HT +M++ F+  LL  WK + L L   + A+ N     + F  ++S+ 
Sbjct: 568 GEELLRIAPTPHHTPQMMNFFLEKLLLTWKRVGLELKPHSSAECNFCRRPLHFE-VMSER 626

Query: 510 QQA 512
           ++A
Sbjct: 627 EKA 629

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P43090|HEM0_OPSTA 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Opsanus tau GN=alas2 PE=2 SV=1

 Score =  355 bits (911), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 166/278 (59%), Positives = 210/278 (75%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           ++ G  +  +   HASMIQGIRNS A + I+RHND  HL ++L+  D K PK+VAFETVH
Sbjct: 267 MLPGCHIYSDAGNHASMIQGIRNSGAKRFIFRHNDSRHLEELLQQSDPKTPKIVAFETVH 326

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM GAICPL+ELC+V+H+HGALTFVDEVHAVGLYG HGAG+GERD  +H +DI+SGTLGK
Sbjct: 327 SMDGAICPLEELCDVAHRHGALTFVDEVHAVGLYGAHGAGVGERDNVMHKIDIVSGTLGK 386

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           AFG +GGY+  +   +DT+RS+AAGFIFTTSLPP +LAGA E++R+L S EG  LR  HQ
Sbjct: 387 AFGCVGGYVASSAALVDTVRSFAAGFIFTTSLPPMILAGALESVRVLKSPEGQLLRRAHQ 446

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
             V Y+R  L+  G PV + PSHIIPI++GN  LNTK+CD LL++   YVQ INYPTVP 
Sbjct: 447 RNVKYMRQLLMDKGLPVVNCPSHIIPIRVGNAELNTKVCDSLLEKHNIYVQAINYPTVPR 506

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSG 487
           G+E +RLAP+P H   M++ FV  L+ VW+   L L+G
Sbjct: 507 GQELLRLAPSPHHHPAMMEYFVDKLVEVWQEAGLLLNG 544

Opsanus tau (taxid: 8068)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
270006907	536	hypothetical protein TcasGA2_TC013340 [T	0.536	0.514	0.670	1e-111
189237595	538	PREDICTED: similar to 5-aminolevulinic a	0.536	0.513	0.670	1e-111
312377557	708	hypothetical protein AND_11113 [Anophele	0.525	0.381	0.696	1e-111
347969423	575	AGAP003184-PA [Anopheles gambiae str. PE	0.536	0.48	0.670	1e-110
242012831	542	5-aminolevulinate synthase, nonspecific,	0.533	0.505	0.693	1e-110
193636587	535	PREDICTED: 5-aminolevulinate synthase, e	0.536	0.515	0.656	1e-108
170043124	552	5-aminolevulinate synthase, mitochondria	0.568	0.528	0.641	1e-107
157116925	571	5-aminolevulinic acid synthase [Aedes ae	0.568	0.511	0.641	1e-107
332375148	533	unknown [Dendroctonus ponderosae]	0.535	0.515	0.640	1e-106
194885908	537	GG22911 [Drosophila erecta] gi|190659697	0.570	0.545	0.630	1e-105

>gi|270006907|gb|EFA03355.1| hypothetical protein TcasGA2_TC013340 [Tribolium castaneum]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/282 (67%), Positives = 229/282 (81%)

Query: 211 ISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270
           + G  +  +   HASMIQGIRNS  PK I++HND  HL  +L+ ++  IPK+VAFETVHS
Sbjct: 213 LPGCHIFSDAGNHASMIQGIRNSQVPKHIFKHNDPAHLEDLLKTVNKNIPKIVAFETVHS 272

Query: 271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330
           M+GA+CPL+ELC+V+H++GALTF+DEVHAVGLYGEHGAGIGERDG+LH MDIISGTLGKA
Sbjct: 273 MSGAVCPLEELCDVAHKYGALTFIDEVHAVGLYGEHGAGIGERDGKLHKMDIISGTLGKA 332

Query: 331 FGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390
           FGN+GGYI  +   +D IRSYAAGFIFTTSLPPTVL+GA +AI+IL+S EG ELR +HQD
Sbjct: 333 FGNVGGYIASSATLVDMIRSYAAGFIFTTSLPPTVLSGAYKAIQILASDEGRELRRRHQD 392

Query: 391 IVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG 450
            V YLR  L+  GFPVEHTPSHIIPIKIG+P     +CD LLKEKGHY+Q INYPTV  G
Sbjct: 393 NVKYLRGNLLNNGFPVEHTPSHIIPIKIGDPVQCGAVCDTLLKEKGHYIQAINYPTVARG 452

Query: 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQ 492
           +EK+RLAPTP HT+EM+D  V DL  VW++L+LP +GL C +
Sbjct: 453 QEKLRLAPTPHHTKEMMDTLVGDLKEVWQTLNLPFTGLQCGK 494

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237595|ref|XP_966729.2| PREDICTED: similar to 5-aminolevulinic acid synthase [Tribolium castaneum]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/282 (67%), Positives = 229/282 (81%)

Query: 211 ISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270
           + G  +  +   HASMIQGIRNS  PK I++HND  HL  +L+ ++  IPK+VAFETVHS
Sbjct: 215 LPGCHIFSDAGNHASMIQGIRNSQVPKHIFKHNDPAHLEDLLKTVNKNIPKIVAFETVHS 274

Query: 271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330
           M+GA+CPL+ELC+V+H++GALTF+DEVHAVGLYGEHGAGIGERDG+LH MDIISGTLGKA
Sbjct: 275 MSGAVCPLEELCDVAHKYGALTFIDEVHAVGLYGEHGAGIGERDGKLHKMDIISGTLGKA 334

Query: 331 FGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390
           FGN+GGYI  +   +D IRSYAAGFIFTTSLPPTVL+GA +AI+IL+S EG ELR +HQD
Sbjct: 335 FGNVGGYIASSATLVDMIRSYAAGFIFTTSLPPTVLSGAYKAIQILASDEGRELRRRHQD 394

Query: 391 IVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG 450
            V YLR  L+  GFPVEHTPSHIIPIKIG+P     +CD LLKEKGHY+Q INYPTV  G
Sbjct: 395 NVKYLRGNLLNNGFPVEHTPSHIIPIKIGDPVQCGAVCDTLLKEKGHYIQAINYPTVARG 454

Query: 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQ 492
           +EK+RLAPTP HT+EM+D  V DL  VW++L+LP +GL C +
Sbjct: 455 QEKLRLAPTPHHTKEMMDTLVGDLKEVWQTLNLPFTGLQCGK 496

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377557|gb|EFR24366.1| hypothetical protein AND_11113 [Anopheles darlingi]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/270 (69%), Positives = 223/270 (82%)

Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HASMIQGIRNS  PK I+RHND  HL ++LE +D  +PK+VAFETVHSMTGA+CPL+ELC
Sbjct: 396 HASMIQGIRNSGVPKHIFRHNDPQHLRELLERVDKSLPKIVAFETVHSMTGAVCPLEELC 455

Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
           E++H++GALTFVDEVHAVGLYGEHGAGIGER+GQLHNMDIISGTLGKAFGN+GGYI  T 
Sbjct: 456 EIAHEYGALTFVDEVHAVGLYGEHGAGIGEREGQLHNMDIISGTLGKAFGNVGGYIASTS 515

Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
             +D IRSYAAGFIFTTSLPPTVL GA++AI IL+S+EG ELR +HQ  V YLR  L + 
Sbjct: 516 LLVDMIRSYAAGFIFTTSLPPTVLCGAKKAIEILASEEGRELRTRHQANVRYLRTRLQEE 575

Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
           GFPVEHTPSHIIP+KIGNP   T++ D +++  GHYVQ INYPTV  GEEK+RLAPTP H
Sbjct: 576 GFPVEHTPSHIIPVKIGNPQQCTEVSDRMIQRFGHYVQAINYPTVARGEEKLRLAPTPHH 635

Query: 463 TREMIDKFVTDLLAVWKSLDLPLSGLTCAQ 492
           T  M+D+ V D+  VW+ L +PLSG +C +
Sbjct: 636 TTAMMDEMVRDMKVVWQDLGMPLSGKSCPE 665

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969423|ref|XP_312882.5| AGAP003184-PA [Anopheles gambiae str. PEST] gi|333468517|gb|EAA08478.5| AGAP003184-PA [Anopheles gambiae str. PEST]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/282 (67%), Positives = 227/282 (80%)

Query: 211 ISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270
           + G  +  +   HASMIQGIRNS  PK I+RHND  HL ++L+ +D  +PK+VAFETVHS
Sbjct: 250 LPGCHIFSDAGNHASMIQGIRNSGVPKHIFRHNDPAHLRELLQRVDRSLPKIVAFETVHS 309

Query: 271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330
           M+GA+CPL+ELCE++H++GALTFVDEVHAVGLYGEHGAGIGER+GQLHNMDIISGTLGKA
Sbjct: 310 MSGAVCPLEELCEIAHEYGALTFVDEVHAVGLYGEHGAGIGEREGQLHNMDIISGTLGKA 369

Query: 331 FGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390
           FGN+GGYI GT   ID IRSYAAGFIFTTSLPPTVL GA +A+ IL+S+EG ELRA+HQ 
Sbjct: 370 FGNVGGYIAGTALLIDMIRSYAAGFIFTTSLPPTVLCGALKAVDILASEEGRELRARHQS 429

Query: 391 IVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG 450
            V YLR  L + GFPVEHTPSHIIP+KIGNP   T++ D +++  GHYVQ INYPTV  G
Sbjct: 430 NVRYLRQRLQEEGFPVEHTPSHIIPVKIGNPQQCTELSDRMIQRFGHYVQAINYPTVARG 489

Query: 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQ 492
           EEK+RLAPTP HTR M+D+ V D+  VW+ L +PL G  C +
Sbjct: 490 EEKLRLAPTPHHTRAMMDELVRDMKVVWQDLKMPLGGKHCPE 531

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012831|ref|XP_002427130.1| 5-aminolevulinate synthase, nonspecific, putative [Pediculus humanus corporis] gi|212511401|gb|EEB14392.1| 5-aminolevulinate synthase, nonspecific, putative [Pediculus humanus corporis]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/274 (69%), Positives = 227/274 (82%)

Query: 211 ISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270
           + G  V  +   HASMIQGIRNS  PK IYRHND +HL ++L  +D +IPK+VAFETVHS
Sbjct: 216 LPGCHVFSDAGNHASMIQGIRNSRVPKHIYRHNDADHLNEMLSTVDREIPKIVAFETVHS 275

Query: 271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330
           MTGA+CPLK+LC+VSH+HGAL FVDEVHAVGLYGEHGAGIGERD QL+NMDIISGTLGKA
Sbjct: 276 MTGAVCPLKKLCDVSHKHGALVFVDEVHAVGLYGEHGAGIGERDNQLNNMDIISGTLGKA 335

Query: 331 FGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390
           FGNIGGYI G+K+ ID IRSYAAGFIFTTSLPP VLAGARE+I+IL S EG  LR  HQ 
Sbjct: 336 FGNIGGYIAGSKHLIDMIRSYAAGFIFTTSLPPAVLAGARESIKILRSYEGAVLREMHQQ 395

Query: 391 IVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG 450
            V  LRN+L + G P+EHTPSHIIPI++GN    T + D+LL++ GHYVQ INYPTVPVG
Sbjct: 396 NVRLLRNKLQEAGLPLEHTPSHIIPIRLGNAEKCTLVSDILLRDYGHYVQAINYPTVPVG 455

Query: 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLP 484
           +EK+RLAPTPFHT++MI+  V D+++V+K L++P
Sbjct: 456 QEKLRLAPTPFHTKQMIEILVRDMISVFKKLNIP 489

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193636587|ref|XP_001944044.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like [Acyrthosiphon pisum]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/282 (65%), Positives = 225/282 (79%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           +I G  +  +   HASMIQGIRN  APK I+RHND  HL ++L ++D  +PK+VAFETVH
Sbjct: 215 MIPGLHIFSDSGNHASMIQGIRNCGAPKHIFRHNDTKHLEELLMSVDKAVPKIVAFETVH 274

Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SMTGAICPL+ELCE+SH++GALTFVDEVHAVGLYG+HGAG+GE  G ++ MDIISGTLGK
Sbjct: 275 SMTGAICPLEELCEISHKYGALTFVDEVHAVGLYGDHGAGVGELRGLMNQMDIISGTLGK 334

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           A+GN+GGY+  + N ID IRSYAAGFIFTTSLPP VLAGAR A+ +L+S EG  LR +HQ
Sbjct: 335 AYGNVGGYVAASSNLIDMIRSYAAGFIFTTSLPPMVLAGARAAVSVLASAEGRSLRKQHQ 394

Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
           + V YLR +L   G PVE TPSHIIPIKIGNP L +KI D+LL+EKGHYVQ INYPTVP+
Sbjct: 395 ENVEYLRKKLYAAGLPVESTPSHIIPIKIGNPNLCSKISDLLLQEKGHYVQAINYPTVPI 454

Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCA 491
           G+EK+RLAPTP HT EM+D  + D+L VW  L +PL+   C+
Sbjct: 455 GQEKLRLAPTPHHTPEMVDTLIEDMLDVWIKLGIPLNATRCS 496

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043124|ref|XP_001849249.1| 5-aminolevulinate synthase, mitochondrial [Culex quinquefasciatus] gi|167866563|gb|EDS29946.1| 5-aminolevulinate synthase, mitochondrial [Culex quinquefasciatus]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 227/293 (77%), Gaps = 1/293 (0%)

Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HASMI GI+NS  PK I+RHND  HL ++L  +D  +PK+VAFETVHSMTGAICPL+ELC
Sbjct: 242 HASMIMGIKNSGVPKHIFRHNDPAHLRELLSKVDKSLPKIVAFETVHSMTGAICPLEELC 301

Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
           +++H+ GALTFVDEVHAVGLYG HGAG+GER+G LH MDI+SGTLGKAFGN+GGYI  T 
Sbjct: 302 DIAHEFGALTFVDEVHAVGLYGAHGAGVGEREGLLHKMDIVSGTLGKAFGNVGGYIASTS 361

Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
             ID +RSYAAGFIFTTSLPPTVL GA +A+ IL+S EG ELRA+HQD V YLR +L Q 
Sbjct: 362 LLIDMVRSYAAGFIFTTSLPPTVLCGALKAVEILASDEGRELRARHQDNVRYLRTKLQQE 421

Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
           GFPVEHTPSHIIP+KIGNPA  T++ D ++K  GHY+Q INYPTV  GEEK+RLAPTP H
Sbjct: 422 GFPVEHTPSHIIPVKIGNPAQCTEVSDQMIKRFGHYIQAINYPTVARGEEKLRLAPTPHH 481

Query: 463 TREMIDKFVTDLLAVWKSLDLPLSGLTC-AQVNILLFIILFHLILSQVQQALS 514
            R+M+D  + D+  VWK L LPL+G  C A+       +LF    S+ + A +
Sbjct: 482 NRDMMDILIRDMKVVWKDLGLPLNGPPCTAECTFCRKPLLFDRFESRTKAACA 534

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116925|ref|XP_001658653.1| 5-aminolevulinic acid synthase [Aedes aegypti] gi|108876264|gb|EAT40489.1| AAEL007787-PA [Aedes aegypti]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 229/293 (78%), Gaps = 1/293 (0%)

Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HASMIQGI+NS  PK I+RHND  HL ++L  +D  +PK+VAFETVHSMTGAICPL+ELC
Sbjct: 261 HASMIQGIKNSGVPKHIFRHNDPAHLRELLSKVDKSLPKIVAFETVHSMTGAICPLEELC 320

Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
           +V+H+ GALTFVDEVHAVGLYG+HGAG+GER+G LH MDIISGTLGKAFGN+GGYI  T 
Sbjct: 321 DVAHEFGALTFVDEVHAVGLYGDHGAGVGEREGLLHKMDIISGTLGKAFGNVGGYIASTS 380

Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
             ID +RSYAAGFIFTTSLPPTVL GA +A+ IL+S EG ELR +HQ+ V YLR  L + 
Sbjct: 381 LLIDMVRSYAAGFIFTTSLPPTVLCGALKAVNILASDEGRELRTRHQENVRYLRGLLQRE 440

Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
           GFPVEHTPSHIIP+KIGNPA  T++ D+++K  GHY+Q INYPTV  GEEK+RLAPTP H
Sbjct: 441 GFPVEHTPSHIIPVKIGNPAQCTELSDLMIKRFGHYIQAINYPTVARGEEKLRLAPTPHH 500

Query: 463 TREMIDKFVTDLLAVWKSLDLPLSGLTC-AQVNILLFIILFHLILSQVQQALS 514
           T+EM+D  V D+  VWK L +PL+G  C A+       +LF    S+ + + +
Sbjct: 501 TKEMMDILVRDMKIVWKDLGMPLNGSACTAECTFCRKPLLFDRFESRTKASCA 553

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375148|gb|AEE62715.1| unknown [Dendroctonus ponderosae]

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/281 (64%), Positives = 224/281 (79%)

Query: 211 ISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS 270
           + G  +  +   HASMIQGI+NS  PK I+RHN+  HL ++++ +D  +PK+VAFETVHS
Sbjct: 220 LPGCHIFSDAGNHASMIQGIKNSQVPKHIFRHNNPEHLEELIQKVDNHLPKIVAFETVHS 279

Query: 271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA 330
           MTGA+CPL ELC+++H+HGALTFVDEVHAVGLYG+HGAGIGERD  +H MD+ISGTLGKA
Sbjct: 280 MTGAVCPLHELCDIAHKHGALTFVDEVHAVGLYGKHGAGIGERDNAMHKMDVISGTLGKA 339

Query: 331 FGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390
           FGNIGGY+ G  N ID +RSY +GFIFTTSLPPTVLAGA++AI +L+S+EG  LR KHQ 
Sbjct: 340 FGNIGGYVAGNANLIDMVRSYGSGFIFTTSLPPTVLAGAKKAIEVLASEEGQLLREKHQF 399

Query: 391 IVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG 450
            V YLR  L + GFPVEHTPSHIIPIKIG+P   + + D LL EKGHY+Q INYPTV  G
Sbjct: 400 NVKYLREMLRRNGFPVEHTPSHIIPIKIGDPMRCSAVSDTLLAEKGHYIQAINYPTVARG 459

Query: 451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCA 491
           +EK+RLAPTP H++EM+D  + DL  VW+ ++LP +GL CA
Sbjct: 460 QEKLRLAPTPHHSKEMMDSLIMDLKEVWERMELPFTGLQCA 500

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194885908|ref|XP_001976510.1| GG22911 [Drosophila erecta] gi|190659697|gb|EDV56910.1| GG22911 [Drosophila erecta]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/298 (63%), Positives = 234/298 (78%), Gaps = 5/298 (1%)

Query: 202 DGQLHNM-DIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           D  L+ +  ++ G  +  +   HASMI GIRNS  PK I+RHNDV+HL Q+L+  D  +P
Sbjct: 211 DSTLYTLAKLLPGCEIFSDAGNHASMIMGIRNSGVPKHIFRHNDVDHLHQLLKQTDKSVP 270

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
           K+VAFETVHSMTGAICPL+EL +V+H+HGA+TF+DEVHAVGLYG+HGAG+GERDG LH M
Sbjct: 271 KIVAFETVHSMTGAICPLEELLDVAHEHGAITFIDEVHAVGLYGDHGAGVGERDGVLHKM 330

Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
           DIISGTLGKAFGNIGGYI GT N +D IRSYAAGFIFTTSLPPTVL GA E++ IL+S+E
Sbjct: 331 DIISGTLGKAFGNIGGYIAGTHNLVDMIRSYAAGFIFTTSLPPTVLCGALESVNILASEE 390

Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQ 440
           G +LR  HQ  V+YL++ L + GFPVE TPSHIIPIKIG+P  +++I ++L+++ GHY+Q
Sbjct: 391 GRQLRLLHQRNVSYLKSLLKREGFPVEETPSHIIPIKIGDPLKSSQISNVLIEQFGHYLQ 450

Query: 441 PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL----PLSGLTCAQVN 494
            INYPTV  G+EK+RLAPTPFHT EM++  VTDL  VW+ +DL    PLS   C   N
Sbjct: 451 SINYPTVARGQEKLRLAPTPFHTFEMMNALVTDLKKVWEMVDLSTNVPLSPNACMFCN 508

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
FB|FBgn0020764	539	Alas "Aminolevulinate synthase	0.554	0.528	0.647	8.2e-99
UNIPROTKB|P22557	587	ALAS2 "5-aminolevulinate synth	0.554	0.485	0.614	2.1e-93
UNIPROTKB|Q5JZF5	574	ALAS2 "Aminolevulinate, delta-	0.554	0.496	0.614	2.1e-93
MGI|MGI:87990	587	Alas2 "aminolevulinic acid syn	0.554	0.485	0.610	5.5e-93
UNIPROTKB|Q5R557	587	ALAS2 "5-aminolevulinate synth	0.554	0.485	0.610	9e-93
RGD|2084	587	Alas2 "aminolevulinate, delta-	0.554	0.485	0.610	9e-93
UNIPROTKB|F1P796	538	ALAS2 "Uncharacterized protein	0.554	0.529	0.596	1.3e-91
UNIPROTKB|Q9XT75	582	ALAS2 "5-aminolevulinate synth	0.554	0.489	0.6	1.7e-91
UNIPROTKB|F1RUD4	587	LOC100518817 "Uncharacterized	0.554	0.485	0.603	2.7e-91
UNIPROTKB|K7GR18	550	LOC100518817 "Uncharacterized	0.554	0.518	0.603	2.7e-91

FB|FBgn0020764 Alas "Aminolevulinate synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 187/289 (64%), Positives = 230/289 (79%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             ++ G  +  +   HASMI GIRNS  PK I+RHNDV+HL Q+L+  D  +PK+VAFETVH
Sbjct:   222 LLPGCEIFSDAGNHASMIMGIRNSGVPKHIFRHNDVDHLHQLLKQTDKSVPKIVAFETVH 281

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SMTGAICPL+EL +V+H+HGA+TF+DEVHAVGLYG+HGAG+GERDG LH MDIISGTLGK
Sbjct:   282 SMTGAICPLEELLDVAHEHGAITFIDEVHAVGLYGDHGAGVGERDGVLHKMDIISGTLGK 341

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFGNIGGYI GT N +D IRSYAAGFIFTTSLPPTVL GA EA+ IL+S+EG +LR  HQ
Sbjct:   342 AFGNIGGYIAGTHNLVDMIRSYAAGFIFTTSLPPTVLCGALEAVNILASEEGRQLRHLHQ 401

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V+YL++ L + GFPVE TPSHIIPIKIG+P  +++I ++L+++ GHY+Q INYPTV  
Sbjct:   402 RNVSYLKSLLKREGFPVEETPSHIIPIKIGDPLKSSQISNVLIEQFGHYLQSINYPTVAR 461

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL----PLSGLTCAQVN 494
             G+EK+RLAPTPFHT EM++  VTDL  VW+ +DL    PLS   C   N
Sbjct:   462 GQEKLRLAPTPFHTFEMMNALVTDLKKVWEMVDLSTNVPLSPNACMFCN 510

GO:0003870 "5-aminolevulinate synthase activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=RCA

GO:0006783 "heme biosynthetic process" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0040003 "chitin-based cuticle development" evidence=IMP

UNIPROTKB|P22557 ALAS2 "5-aminolevulinate synthase, erythroid-specific, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 175/285 (61%), Positives = 219/285 (76%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++LE  + KIPK+VAFETVH
Sbjct:   272 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFETVH 331

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+VSHQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   332 SMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 391

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  G PV   PSHIIPI++GN ALN+K+CD+LL + G YVQ INYPTVP 
Sbjct:   452 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPR 511

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LL  W ++ LPL  ++ A  N
Sbjct:   512 GEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQDVSVAACN 556

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=ISS;NAS

GO:0003870 "5-aminolevulinate synthase activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006783 "heme biosynthetic process" evidence=ISS;NAS;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042541 "hemoglobin biosynthetic process" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=ISS

GO:0016594 "glycine binding" evidence=ISS

GO:0032364 "oxygen homeostasis" evidence=NAS

GO:0050662 "coenzyme binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006778 "porphyrin-containing compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5JZF5 ALAS2 "Aminolevulinate, delta-, synthase 2 (Sideroblastic/hypochromic anemia), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 175/285 (61%), Positives = 219/285 (76%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++LE  + KIPK+VAFETVH
Sbjct:   259 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFETVH 318

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+VSHQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   319 SMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 378

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   379 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 438

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  G PV   PSHIIPI++GN ALN+K+CD+LL + G YVQ INYPTVP 
Sbjct:   439 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPR 498

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LL  W ++ LPL  ++ A  N
Sbjct:   499 GEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQDVSVAACN 543

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

MGI|MGI:87990 Alas2 "aminolevulinic acid synthase 2, erythroid" [Mus musculus (taxid:10090)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 174/285 (61%), Positives = 216/285 (75%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             ++ G  +  +   HASMIQGIRNS A K ++RHND  HL ++LE  D K PK+VAFETVH
Sbjct:   272 LLPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVH 331

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   332 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGARGAGIGERDGIMHKLDIISGTLGK 391

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  GFPV   PSHIIPI++GN ALN+KICD+LL +   YVQ INYPTVP 
Sbjct:   452 RNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQAINYPTVPR 511

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LL  W  + LPL  ++ A  N
Sbjct:   512 GEELLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQDVSVAACN 556

GO:0001666 "response to hypoxia" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=ISO;IMP

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IMP

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0008152 "metabolic process" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016594 "glycine binding" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IMP

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0042541 "hemoglobin biosynthetic process" evidence=IMP

GO:0050662 "coenzyme binding" evidence=ISO

UNIPROTKB|Q5R557 ALAS2 "5-aminolevulinate synthase, erythroid-specific, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 174/285 (61%), Positives = 217/285 (76%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++LE  + KIPK+VAFE VH
Sbjct:   272 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFEAVH 331

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+VSHQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   332 SMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 391

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  G PV   PSHIIPI++GN ALN+K+CD+LL + G YVQ INYPTVP 
Sbjct:   452 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPR 511

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LL  W  + LPL  ++ A  N
Sbjct:   512 GEELLRLAPSPHHSPQMMEDFVEKLLLAWTEVGLPLQDVSVAACN 556

GO:0001666 "response to hypoxia" evidence=ISS

GO:0003870 "5-aminolevulinate synthase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

RGD|2084 Alas2 "aminolevulinate, delta-, synthase 2" [Rattus norvegicus (taxid:10116)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 174/285 (61%), Positives = 216/285 (75%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             ++ G  +  +   HASMIQGIRNS A K ++RHND  HL ++LE  D K PK+VAFETVH
Sbjct:   272 LLPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVH 331

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   332 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGTRGAGIGERDGIMHKLDIISGTLGK 391

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  GFPV   PSHIIPI++GN ALN+KICD+LL +   YVQ INYPTVP 
Sbjct:   452 RNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDLLLAKHSIYVQAINYPTVPR 511

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LL  W  + LPL  ++ A  N
Sbjct:   512 GEELLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQDVSVAACN 556

GO:0001666 "response to hypoxia" evidence=ISO;IEP;ISS

GO:0003870 "5-aminolevulinate synthase activity" evidence=ISO;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISO;ISS;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=ISO;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=ISO

GO:0007565 "female pregnancy" evidence=IEP

GO:0007595 "lactation" evidence=IEP

GO:0010288 "response to lead ion" evidence=IEP

GO:0016594 "glycine binding" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=ISO;ISS

GO:0042493 "response to drug" evidence=IEP

GO:0042541 "hemoglobin biosynthetic process" evidence=ISO;ISS

GO:0050662 "coenzyme binding" evidence=IDA

UNIPROTKB|F1P796 ALAS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 170/285 (59%), Positives = 217/285 (76%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++L+  + + PK+VAFETVH
Sbjct:   223 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKESNTRTPKIVAFETVH 282

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DI+SGTLGK
Sbjct:   283 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGPQGAGIGERDGVMHKIDIVSGTLGK 342

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   343 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 402

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  G PV   PSHIIPI++G+ ALN+KICD+LL + G YVQ INYPTVP 
Sbjct:   403 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGDAALNSKICDLLLSKHGIYVQAINYPTVPR 462

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LL  W  + LPL  ++ A  N
Sbjct:   463 GEELLRLAPSPHHSPQMMEDFVQKLLVAWTEVGLPLQDVSMAACN 507

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

UNIPROTKB|Q9XT75 ALAS2 "5-aminolevulinate synthase, erythroid-specific, mitochondrial" [Delphinapterus leucas (taxid:9749)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 171/285 (60%), Positives = 218/285 (76%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             I+ G  +  +   HASMIQGIRNS A K ++RHND +HL ++L+  + + PK+VAFETVH
Sbjct:   267 ILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKKSNPETPKIVAFETVH 326

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   327 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 386

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   387 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 446

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  G PV   PSHIIPI++G+ ALN++ICD+LL + G YVQ INYPTVP 
Sbjct:   447 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGDAALNSRICDLLLSKHGIYVQAINYPTVPR 506

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LLA W  + LPL  ++ A  N
Sbjct:   507 GEELLRLAPSPHHSPQMMEDFVEKLLAAWTEVGLPLQDVSIAACN 551

GO:0001666 "response to hypoxia" evidence=ISS

GO:0003870 "5-aminolevulinate synthase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=ISS

GO:0030218 "erythrocyte differentiation" evidence=ISS

GO:0042541 "hemoglobin biosynthetic process" evidence=ISS

UNIPROTKB|F1RUD4 LOC100518817 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 172/285 (60%), Positives = 215/285 (75%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             I+ G  +  +   HASMIQGIRNS A K ++RHND  HL ++LE  +   PK+VAFETVH
Sbjct:   272 ILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVH 331

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   332 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 391

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   392 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 451

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  G PV   PSHIIPI++GN ALN++ICD+LL + G YVQ INYPTVP 
Sbjct:   452 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPR 511

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LLA W  + LPL  ++    N
Sbjct:   512 GEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACN 556

GO:0042541 "hemoglobin biosynthetic process" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

UNIPROTKB|K7GR18 LOC100518817 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 172/285 (60%), Positives = 215/285 (75%)

Query:   210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
             I+ G  +  +   HASMIQGIRNS A K ++RHND  HL ++LE  +   PK+VAFETVH
Sbjct:   235 ILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVH 294

Query:   270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
             SM GAICPL+ELC+V+HQ+GALTFVDEVHAVGLYG  GAGIGERDG +H +DIISGTLGK
Sbjct:   295 SMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGK 354

Query:   330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
             AFG +GGYI  T++ +D +RSYAAGFIFTTSLPP VL+GA E++R+L  +EG  LR  HQ
Sbjct:   355 AFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQ 414

Query:   390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
               V ++R  L+  G PV   PSHIIPI++GN ALN++ICD+LL + G YVQ INYPTVP 
Sbjct:   415 RNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPR 474

Query:   450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVN 494
             GEE +RLAP+P H+ +M++ FV  LLA W  + LPL  ++    N
Sbjct:   475 GEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACN 519

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZC31	HEM0_BOVIN	2, ., 3, ., 1, ., 3, 7	0.5810	0.5758	0.5042	yes	N/A
Q06965	HEM0_RHOS4	2, ., 3, ., 1, ., 3, 7	0.4390	0.6070	0.7665	yes	N/A
Q63147	HEM0_RAT	2, ., 3, ., 1, ., 3, 7	0.5470	0.6342	0.5553	yes	N/A
P07997	HEM1_CHICK	2, ., 3, ., 1, ., 3, 7	0.5810	0.5642	0.4566	yes	N/A
Q5R557	HEM0_PONAB	2, ., 3, ., 1, ., 3, 7	0.5945	0.5758	0.5042	yes	N/A
P08680	HEM0_MOUSE	2, ., 3, ., 1, ., 3, 7	0.5945	0.5758	0.5042	yes	N/A
P22557	HEM0_HUMAN	2, ., 3, ., 1, ., 3, 7	0.5979	0.5758	0.5042	yes	N/A
Q9YHT4	HEM0_DANRE	2, ., 3, ., 1, ., 3, 7	0.6007	0.5291	0.4665	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1.37	0.824
3rd Layer	2.3.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	514
TIGR01821	402	TIGR01821, 5aminolev_synth, 5-aminolevulinic acid	1e-133
PRK09064	407	PRK09064, PRK09064, 5-aminolevulinate synthase; Va	1e-132
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	1e-123
PRK13393	406	PRK13393, PRK13393, 5-aminolevulinate synthase; Pr	1e-116
PRK13392	410	PRK13392, PRK13392, 5-aminolevulinate synthase; Pr	1e-105
TIGR01821	402	TIGR01821, 5aminolev_synth, 5-aminolevulinic acid	1e-93
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	2e-89
PRK09064	407	PRK09064, PRK09064, 5-aminolevulinate synthase; Va	3e-89
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	3e-85
PRK13393	406	PRK13393, PRK13393, 5-aminolevulinate synthase; Pr	2e-78
PRK13392	410	PRK13392, PRK13392, 5-aminolevulinate synthase; Pr	4e-71
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	9e-69
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	4e-68
PRK06939	397	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym	3e-66
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	2e-61
TIGR01825	385	TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe	3e-58
TIGR01822	393	TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co	1e-50
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	6e-45
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	4e-44
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	4e-42
PRK06939	397	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym	1e-38
TIGR01825	385	TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe	1e-35
PLN02483	489	PLN02483, PLN02483, serine palmitoyltransferase	3e-34
PRK07179	407	PRK07179, PRK07179, hypothetical protein; Provisio	3e-32
TIGR01822	393	TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co	4e-32
PLN02955	476	PLN02955, PLN02955, 8-amino-7-oxononanoate synthas	1e-30
PRK07505	402	PRK07505, PRK07505, hypothetical protein; Provisio	1e-28
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	3e-28
PLN02483	489	PLN02483, PLN02483, serine palmitoyltransferase	9e-27
PLN03227	392	PLN03227, PLN03227, serine palmitoyltransferase-li	1e-22
PLN02955	476	PLN02955, PLN02955, 8-amino-7-oxononanoate synthas	5e-22
PLN02822	481	PLN02822, PLN02822, serine palmitoyltransferase	1e-20
PRK07179	407	PRK07179, PRK07179, hypothetical protein; Provisio	9e-20
PRK05937	370	PRK05937, PRK05937, 8-amino-7-oxononanoate synthas	3e-19
PLN03227	392	PLN03227, PLN03227, serine palmitoyltransferase-li	1e-14
PRK05937	370	PRK05937, PRK05937, 8-amino-7-oxononanoate synthas	2e-14
PLN02822	481	PLN02822, PLN02822, serine palmitoyltransferase	6e-12
PRK07505	402	PRK07505, PRK07505, hypothetical protein; Provisio	4e-10
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	3e-09
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	7e-09
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	4e-08
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-07
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	2e-07
TIGR03301	355	TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin	2e-06
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	9e-06
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	3e-05
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	4e-05
cd06451	356	cd06451, AGAT_like, Alanine-glyoxylate aminotransf	1e-04
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	1e-04
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	3e-04
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	3e-04
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	5e-04
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	0.002
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	0.002
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	0.002
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	0.002
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	0.002
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	0.003
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	0.004
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	0.004

>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase

 Score =  391 bits (1006), Expect = e-133
 Identities = 152/275 (55%), Positives = 196/275 (71%), Gaps = 8/275 (2%)

Query: 218 PEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 271
           P   I      HASMI+GIR+S A K I+RHNDV HL ++L+++D   PK++AFE+V+SM
Sbjct: 130 PGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSM 189

Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331
            G I P++E+C+++ ++GALT++DEVHAVGLYG  G GI ERDG +H +DII GTL KAF
Sbjct: 190 DGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAF 249

Query: 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI 391
           G +GGYI  ++  ID IRSYA GFIFTTSLPP + AGA  +IR L   +  +LR  HQ+ 
Sbjct: 250 GVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQ--DLRRAHQEN 307

Query: 392 VAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE 451
           V  L+N L  +G PV   PSHI+P+ IG+ AL  K+ D+LL + G YVQPINYPTVP G 
Sbjct: 308 VKRLKNLLEALGIPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGT 367

Query: 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLS 486
           E++R+ PTP HT +MID  V  LL VW  L LPLS
Sbjct: 368 ERLRITPTPAHTDKMIDDLVEALLLVWDRLGLPLS 402

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 402

>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated

 Score =  389 bits (1003), Expect = e-132
 Identities = 143/265 (53%), Positives = 182/265 (68%), Gaps = 2/265 (0%)

Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HASMI+GIR S   K I+RHNDV HL ++L   D   PKL+AFE+V+SM G I P+ E+C
Sbjct: 142 HASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEIC 201

Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
           +++ ++ ALT++DEVHAVG+YG  G GI ERDG +  +DII GTL KAFG +GGYI G+ 
Sbjct: 202 DLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMGGYIAGSA 261

Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
             +D +RSYA GFIFTTSLPP + A A  +IR L  +E  E R +HQ+  A L+  L   
Sbjct: 262 ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL--KESNEERERHQERAAKLKAALDAA 319

Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
           G PV    SHI+P+ +G+P    K  DMLL+E G YVQPINYPTVP G E++R+ PTPFH
Sbjct: 320 GIPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFH 379

Query: 463 TREMIDKFVTDLLAVWKSLDLPLSG 487
           T EMID  V  L+ VW  L LP + 
Sbjct: 380 TDEMIDHLVEALVEVWARLGLPRAA 404

Length = 407

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score =  364 bits (937), Expect = e-123
 Identities = 130/280 (46%), Positives = 172/280 (61%), Gaps = 12/280 (4%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK-I 259
           N  ++S TL      I      HAS+I GIR S A K I++HND+  L ++L        
Sbjct: 74  NDGVLS-TLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARRPYG 132

Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
            KL+  E V+SM G I PL EL +++ ++GA+ FVDE H+VG+YG HG G+ E  G   +
Sbjct: 133 KKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDD 192

Query: 320 MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ 379
           +DII GTLGKAFG +GGYI G+K  ID +RSYA GFIF+TSLPP V A A  A+ +L  Q
Sbjct: 193 VDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL--Q 250

Query: 380 EGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTK-ICDMLLKEKGHY 438
            G E R + Q+ V YLR  L ++GFPV  +PSHIIP  IG+         D LL+  G Y
Sbjct: 251 GGPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLER-GIY 309

Query: 439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
           VQ I YPTVP G  ++R++ +  HT+E ID+ +  L  V 
Sbjct: 310 VQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEVG 349

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional

 Score =  348 bits (894), Expect = e-116
 Identities = 153/318 (48%), Positives = 197/318 (61%), Gaps = 18/318 (5%)

Query: 168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMI 227
           EL ++  +  AL F         Y  + A +     +L    I+S  L N     HASMI
Sbjct: 98  ELADLHGKEAALLFTSG------YVSNWAALSTLGSRLPGCVILSDEL-N-----HASMI 145

Query: 228 QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 287
           +GIR+S A K I+RHND   L + L ++D   PKLVAFE+V+SM G I P+ E+C+V+ +
Sbjct: 146 EGIRHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEK 205

Query: 288 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDT 347
           HGA+T++DEVHAVGLYG  G GI ER+G    + II GTL KAFG +GGYI G+    D 
Sbjct: 206 HGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMGGYITGSAALCDF 265

Query: 348 IRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELIQIGFP 405
           IRS+A+GFIFTTSLPP V AGA  ++R L  SS E    R +HQD VA LR  L + G P
Sbjct: 266 IRSFASGFIFTTSLPPAVAAGALASVRHLKASSAE----RERHQDRVARLRARLDKAGIP 321

Query: 406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE 465
               PSHI+P+ +G+P L  +I D LL   G YVQPINYPTVP G E++R+ P+P HT  
Sbjct: 322 HLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDA 381

Query: 466 MIDKFVTDLLAVWKSLDL 483
            I+  V  L  +W  L L
Sbjct: 382 DIEHLVQALSEIWARLGL 399

Length = 406

>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional

 Score =  319 bits (819), Expect = e-105
 Identities = 149/318 (46%), Positives = 200/318 (62%), Gaps = 14/318 (4%)

Query: 167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASM 226
           +EL ++  +  AL F         Y  + A +      L    I+S  L       HASM
Sbjct: 98  RELADLHGKESALLFTSG------YVSNDAALSTLGKLLPGCVILSDALN------HASM 145

Query: 227 IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH 286
           I+GIR S A K ++RHND+  L + L ++D   PKL+AFE+V+SM G I P++ +C+++ 
Sbjct: 146 IEGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLAD 205

Query: 287 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFID 346
           ++ ALT+VDEVHAVGLYG  G GI ERDG +  +D+I GTL KAFG +GGYI  + + ID
Sbjct: 206 RYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLGGYIAASADLID 265

Query: 347 TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV 406
            +RS+A GFIFTT+LPP V AGA  AIR L  +     R  HQD VA L+ +L   G PV
Sbjct: 266 FVRSFAPGFIFTTALPPAVAAGATAAIRHL--KTSQTERDAHQDRVAALKAKLNANGIPV 323

Query: 407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM 466
             +PSHI+P+ +G+P L   I D L+ E G Y+QPINYPTVP G E++R+ PTP H  E 
Sbjct: 324 MPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDED 383

Query: 467 IDKFVTDLLAVWKSLDLP 484
           ID  V  L+A+W  L+LP
Sbjct: 384 IDALVAALVAIWDRLELP 401

Length = 410

>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase

 Score =  290 bits (743), Expect = 1e-93
 Identities = 114/207 (55%), Positives = 151/207 (72%), Gaps = 7/207 (3%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           E L+K+G GAGGTRNISG ++ H +LE ++A LH KE+ LVFTS YVAND+TL TL K+I
Sbjct: 70  ETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKII 129

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
           PG    SD  NHASMI+GIR+S A K I+RHNDV HL ++L+++D   PK++AFE+V+SM
Sbjct: 130 PGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSM 189

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
            G I P++E+C+++ ++GALT++DEVHAVGLYG  G GI ERDG +H +DII GTL    
Sbjct: 190 DGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAF 249

Query: 216 --VNPEVAIHASMIQGIRNSSAPKIIY 240
             V   +A    +I  IR S AP  I+
Sbjct: 250 GVVGGYIAASRKLIDAIR-SYAPGFIF 275

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 402

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score =  279 bits (715), Expect = 2e-89
 Identities = 116/281 (41%), Positives = 161/281 (57%), Gaps = 13/281 (4%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VK 258
           N+ ++S  L+     I      HAS+I GIR S A    ++HND++HL  +LE       
Sbjct: 112 NLGLLS-ALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGA 170

Query: 259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
             KL+  E V SM G I PL EL E++ ++GAL +VDE HAVG+ G +G G+ E  G   
Sbjct: 171 RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEP 230

Query: 319 -NMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
             +DII GTLGKA G+ GGYI G+   ID +R+ A  FIF+T+LPP V A A  A+RIL 
Sbjct: 231 EEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRIL- 289

Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
            +EG E R + Q++ A+ R+ L  +G  +  + S IIP+ +G+     +    LL+E G 
Sbjct: 290 -EEGPERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEERALEASRALLEE-GI 347

Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
           YV  I  PTVP G  ++R+  T  HT E ID+    L  V 
Sbjct: 348 YVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEVG 388

Length = 388

>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated

 Score =  279 bits (715), Expect = 3e-89
 Identities = 108/207 (52%), Positives = 144/207 (69%), Gaps = 7/207 (3%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           EAL++ G GAGGTRNISG + +H +LE ++A LH KEA LVFTS YV+ND+TL TL K+I
Sbjct: 71  EALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLI 130

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
           P     SD  NHASMI+GIR S   K I+RHNDV HL ++L   D   PKL+AFE+V+SM
Sbjct: 131 PDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSM 190

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
            G I P+ E+C+++ ++ ALT++DEVHAVG+YG  G GI ERDG +  +DII GTL    
Sbjct: 191 DGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF 250

Query: 216 --VNPEVAIHASMIQGIRNSSAPKIIY 240
             +   +A  A+++  +R S AP  I+
Sbjct: 251 GVMGGYIAGSAALVDAVR-SYAPGFIF 276

Length = 407

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score =  266 bits (683), Expect = 3e-85
 Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 9/206 (4%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           EAL+K+G GAGG+R ISG S  HE+LEE++A+ H KEA LVF+S Y AND  L TL    
Sbjct: 26  EALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAG-- 83

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK-IPKLVAFETVHS 158
            G   ISD+ NHAS+I GIR S A K I++HND+  L ++L         KL+  E V+S
Sbjct: 84  KGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYS 143

Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--- 215
           M G I PL EL +++ ++GA+ FVDE H+VG+YG HG G+ E  G   ++DII GTL   
Sbjct: 144 MDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKA 203

Query: 216 ---VNPEVAIHASMIQGIRNSSAPKI 238
              V   +A    +I  +R+ +   I
Sbjct: 204 FGAVGGYIAGSKELIDYLRSYARGFI 229

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional

 Score =  251 bits (642), Expect = 2e-78
 Identities = 99/176 (56%), Positives = 127/176 (72%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           EAL+  G GAGGTRNISG + +H  LE ++A LH KEA L+FTS YV+N + L TLG  +
Sbjct: 70  EALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRL 129

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
           PG   +SD  NHASMI+GIR+S A K I+RHND   L + L ++D   PKLVAFE+V+SM
Sbjct: 130 PGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSM 189

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
            G I P+ E+C+V+ +HGA+T++DEVHAVGLYG  G GI ER+G    + II GTL
Sbjct: 190 DGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTL 245

Length = 406

>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional

 Score =  232 bits (592), Expect = 4e-71
 Identities = 106/207 (51%), Positives = 146/207 (70%), Gaps = 7/207 (3%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           +AL+++G GAGGTRNISG S  H  LE ++A LH KE+ L+FTS YV+ND+ L TLGK++
Sbjct: 71  DALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLL 130

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
           PG   +SDA NHASMI+GIR S A K ++RHND+  L + L ++D   PKL+AFE+V+SM
Sbjct: 131 PGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSM 190

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
            G I P++ +C+++ ++ ALT+VDEVHAVGLYG  G GI ERDG +  +D+I GTL    
Sbjct: 191 DGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAF 250

Query: 216 --VNPEVAIHASMIQGIRNSSAPKIIY 240
             +   +A  A +I  +R S AP  I+
Sbjct: 251 GCLGGYIAASADLIDFVR-SFAPGFIF 276

Length = 410

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score =  224 bits (573), Expect = 9e-69
 Identities = 101/275 (36%), Positives = 145/275 (52%), Gaps = 11/275 (4%)

Query: 203 GQLHNMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD 256
           G L N+ +IS  LV     I      HAS+I G R S A    YRHNDV HL ++LE   
Sbjct: 85  GYLANVGVIS-ALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNR 143

Query: 257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 316
            +  KL+  + V SM G I PL +L  ++ ++GA   VD+ H  G+ GE G G  E  G 
Sbjct: 144 GERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGL 203

Query: 317 LHNMDIIS-GTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI 375
                 I  GTL KA G+ G Y+ G++  ID + + A   IF+T+LPP V A A  A+ +
Sbjct: 204 KPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALEL 263

Query: 376 LSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEK 435
           +  QE    R K   ++A LR  L  +GF +  + + I+P+ IG+ A    + + L ++ 
Sbjct: 264 I--QEEPWRREKLLALIARLRAGLEALGFTLMPSCTPIVPVIIGDNASALALAEELQQQ- 320

Query: 436 GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF 470
           G +V  I  PTVP G  ++RL  +  HT   ID+ 
Sbjct: 321 GIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRL 355

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score =  223 bits (571), Expect = 4e-68
 Identities = 94/258 (36%), Positives = 134/258 (51%), Gaps = 5/258 (1%)

Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 281
            HAS+I G R S A    Y HNDV+ L  +L         L+  E+V SM G + PL EL
Sbjct: 132 NHASLIDGARLSRARVRRYPHNDVDALEALLAKWRAG-RALIVTESVFSMDGDLAPLAEL 190

Query: 282 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHNMDIISGTLGKAFGNIGGYIVG 340
             ++ +HGA   VDE H  G+ G  G G+    G       I+ GTLGKA G+ G  ++G
Sbjct: 191 VALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLG 250

Query: 341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400
           ++  ID + + A  FIFTT+LPP   A AR A+RIL  +   E R +   ++A LR  L 
Sbjct: 251 SETLIDYLINRARPFIFTTALPPAQAAAARAALRIL--RREPERRERLAALIARLRAGLR 308

Query: 401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460
            +GF +  + S I P+ +G+      +    L+E+G +V  I  PTVP G  ++R+  T 
Sbjct: 309 ALGFQLMDSQSAIQPLIVGDNERALALAAA-LQEQGFWVGAIRPPTVPAGTSRLRITLTA 367

Query: 461 FHTREMIDKFVTDLLAVW 478
            HT   ID+ +  L    
Sbjct: 368 AHTEADIDRLLEALAEAL 385

Length = 385

>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

 Score =  218 bits (559), Expect = 3e-66
 Identities = 101/286 (35%), Positives = 153/286 (53%), Gaps = 13/286 (4%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           N  +   TL+  E AI      HAS+I G+R   A +  Y +ND+  L   L+       
Sbjct: 115 NGGLFE-TLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGA 173

Query: 261 --KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
             KL+A + V SM G I PL E+C+++ ++ AL  VD+ HAVG  GE+G G  E  G + 
Sbjct: 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMD 233

Query: 319 NMDIISGTLGKAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
            +DII+GTLGKA G   GGY  G K  ID +R  +  ++F+ SL P ++A + + + +L 
Sbjct: 234 RVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL- 292

Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
            +E  ELR +  +   Y R  +   GF +      IIP+ +G+  L  +  D LL+E G 
Sbjct: 293 -EESDELRDRLWENARYFREGMTAAGFTLGPGEHPIIPVMLGDAKLAQEFADRLLEE-GV 350

Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
           YV   ++P VP G+ +IR   +  HT+E +D+ +     V K L +
Sbjct: 351 YVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELGV 396

Length = 397

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score =  205 bits (525), Expect = 2e-61
 Identities = 81/179 (45%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
            A+ ++G GAGG+R ISG S  H +LEE++A     EA L+F+S +VAN   L  L K  
Sbjct: 64  AAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLK-- 121

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVH 157
            G    SD  NHAS+I GIR S A    ++HND++HL  +LE         KL+  E V 
Sbjct: 122 KGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVF 181

Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH-NMDIISGTL 215
           SM G I PL EL E++ ++GAL +VDE HAVG+ G +G G+ E  G     +DII GTL
Sbjct: 182 SMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTL 240

Length = 388

>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative

 Score =  197 bits (502), Expect = 3e-58
 Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 10/295 (3%)

Query: 195 GAGIGERDGQLHNMDIISGTLVNPEVAI-----HASMIQGIRNSSAPKIIYRHNDVNHLT 249
            A +  + G   N  ++S  L   ++ +     HAS+I G+R + A K IY+H D++ L 
Sbjct: 94  EAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLD 153

Query: 250 QVL-ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGA 308
           +VL EN      KL+  + V SM G + PL E+ E++ ++GA+T+VD+ H  G+ GE G 
Sbjct: 154 RVLRENPSYGK-KLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGR 212

Query: 309 GIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAG 368
           G     G    +DI  GTL KA G +GGY  G K  I+ +++ A  F+F+T+ PP V+A 
Sbjct: 213 GTVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAA 272

Query: 369 AREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKIC 428
              A+  L  Q   EL  +  D   + +  L ++G+    + + I P+ IG+     +  
Sbjct: 273 LAAAVDEL--QRSPELMERLWDNTRFFKAGLGKLGYDTGGSETPITPVVIGDEKAAQEFS 330

Query: 429 DMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
              L ++G + Q I +PTVP G  +IR  PT  HT++ +D+ +     V K L L
Sbjct: 331 RR-LFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKELGL 384

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385

>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase

 Score =  177 bits (450), Expect = 1e-50
 Identities = 91/267 (34%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 214 TLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAF 265
           TL+  E AI      HAS+I G+R   A +  Y +ND+  L   L+       +  L+A 
Sbjct: 117 TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIAT 176

Query: 266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325
           + V SM G I PL E+C+++ ++ AL  VDE HA G  G  G G  E  G +  +DII+G
Sbjct: 177 DGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITG 236

Query: 326 TLGKAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
           TLGKA G   GG+    K  ++ +R  +  ++F+ SLPP V+  + + + +L  +   EL
Sbjct: 237 TLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML--EASNEL 294

Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
           R +      Y R  +   GF ++     IIP+ + +  L  +    LL+E G YV    Y
Sbjct: 295 RDRLWANTRYFRERMEAAGFDIKPADHPIIPVMLYDAVLAQRFARRLLEE-GIYVTGFFY 353

Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFV 471
           P VP G+ +IR+  +  HT E +D+ V
Sbjct: 354 PVVPKGQARIRVQISAAHTEEQLDRAV 380

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score =  161 bits (411), Expect = 6e-45
 Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           +A  ++G G+GG+R ++GNS  HE LEE++A+    E  L+F+S Y AN + L  L    
Sbjct: 64  QAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTAL--AG 121

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
            G   +SD  NHAS+I G R S A    Y HNDV+ L  +L         L+  E+V SM
Sbjct: 122 KGDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLAKWRAG-RALIVTESVFSM 180

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 204
            G + PL EL  ++ +HGA   VDE H  G+ G  G G+    G 
Sbjct: 181 DGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGL 225

Length = 385

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score =  159 bits (404), Expect = 4e-44
 Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 38  LGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGK 97
             +  E++G G+  +R +SGNS  HE+LEE++A+    EA L+F+S Y+AN   +  L  
Sbjct: 39  AQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVISAL-- 96

Query: 98  MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 157
           +  G   +SDA NHAS+I G R S A    YRHNDV HL ++LE    +  KL+  + V 
Sbjct: 97  VGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVF 156

Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS-GTL 215
           SM G I PL +L  ++ ++GA   VD+ H  G+ GE G G  E  G       I  GTL
Sbjct: 157 SMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTL 215

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  153 bits (389), Expect = 4e-42
 Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 30/267 (11%)

Query: 223 HASMIQGIRNSSAPKIIYR-------HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI 275
           + S I+  R +    + Y        H D + L   L+    +  K+V   + H+ TG +
Sbjct: 100 YPSYIRIFRLAGGEVVRYPLYSSNDFHLDFDALEAALKE-ATEGNKVVLHTSPHNPTGTV 158

Query: 276 CPLKELCEV---SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD-----IISGTL 327
             L+EL ++   + +H  L  VDE +A  ++G   A           +      ++ G+ 
Sbjct: 159 ATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAV-----ATRALLAEGPNLLVVGSF 213

Query: 328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
            KAFG  G   GYI+G    I  +R  A  F  +T L     A   + + + S  E  E+
Sbjct: 214 SKAFGLAGWRVGYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVAS--ELEEM 271

Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
           R + ++   YLR+ L   G  V  + +    +   +P     +  +LL+E G YV P + 
Sbjct: 272 RQRIKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSS 331

Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFV 471
                G   +R+      T E +++ +
Sbjct: 332 FG---GPGWLRITVAG-GTEEELEELL 354

Length = 357

>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

 Score =  145 bits (368), Expect = 1e-38
 Identities = 70/181 (38%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND---STLFTLG 96
            AL+  G G    R I G    H++LEE +AK    E  ++++SC+ AN     TL    
Sbjct: 67  AALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKE 126

Query: 97  KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAFE 154
             I     ISDA NHAS+I G+R   A +  Y +ND+  L   L+         KL+A +
Sbjct: 127 DAI-----ISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATD 181

Query: 155 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 214
            V SM G I PL E+C+++ ++ AL  VD+ HAVG  GE+G G  E  G +  +DII+GT
Sbjct: 182 GVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGT 241

Query: 215 L 215
           L
Sbjct: 242 L 242

Length = 397

>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative

 Score =  136 bits (344), Expect = 1e-35
 Identities = 78/204 (38%), Positives = 115/204 (56%), Gaps = 10/204 (4%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           +A++++G GAG  R I+G    HE+LEE +AK  + EA LVF S +  N   L  L  + 
Sbjct: 58  QAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSAL--LR 115

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPKLVAFETVHS 158
            G   +SD  NHAS+I G+R + A K IY+H D++ L +VL EN      KL+  + V S
Sbjct: 116 KGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRVLRENPSYGK-KLIVTDGVFS 174

Query: 159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--- 215
           M G + PL E+ E++ ++GA+T+VD+ H  G+ GE G G     G    +DI  GTL   
Sbjct: 175 MDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKA 234

Query: 216 ---VNPEVAIHASMIQGIRNSSAP 236
              V    A H  +I+ ++N + P
Sbjct: 235 IGVVGGYAAGHKELIEYLKNRARP 258

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385

>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase

 Score =  134 bits (339), Expect = 3e-34
 Identities = 83/278 (29%), Positives = 142/278 (51%), Gaps = 28/278 (10%)

Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPK------- 261
           IIS +L N     H S++ G R S A   +++HN  +HL +VL E +    P+       
Sbjct: 188 IISDSL-N-----HNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKK 241

Query: 262 -LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHN 319
            +V  E ++SM G +C L E+  V  ++ A  ++DE H++G  G+ G G+ E  G    +
Sbjct: 242 IIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPAD 301

Query: 320 MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ 379
           +DI+ GT  K+FG+ GGYI G+K  I  ++      ++ TS+ P  +     AI+++  +
Sbjct: 302 VDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGE 361

Query: 380 EGVELRAKH----QDIVAYLRNELIQIGFPV-EHTPSHIIPIKIGNPALNTKICDM---L 431
           +G    A+     ++   + R+EL ++GF V     S ++PI + NPA   KI       
Sbjct: 362 DGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA---KIPAFSREC 418

Query: 432 LKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK 469
           LK+    V  + +P  P+   + R+  +  H+RE + K
Sbjct: 419 LKQNVAVVV-VGFPATPLLLARARICISASHSREDLIK 455

Length = 489

>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional

 Score =  127 bits (321), Expect = 3e-32
 Identities = 72/265 (27%), Positives = 131/265 (49%), Gaps = 11/265 (4%)

Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           H S+ +G+R + A    +RHNDV+HL + +E      P ++  ++V+S TG I PL ++ 
Sbjct: 148 HMSLWEGVRAAGAQAHPFRHNDVDHLRRQIERHG---PGIIVVDSVYSTTGTIAPLADIV 204

Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
           +++ + G +  VDE H++G +G  GAG+    G    +  I+ +L KAF    G I   +
Sbjct: 205 DIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGRAGIITCPR 264

Query: 343 NFIDTIR--SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400
              + +   SY A  IF+++L P  +AG    + ++ S +  + RA+      +LR  L 
Sbjct: 265 ELAEYVPFVSYPA--IFSSTLLPHEIAGLEATLEVIESAD--DRRARLHANARFLREGLS 320

Query: 401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460
           ++G+ +  + S II ++ G+   NT++    L+E+  +      P  P     IRL+   
Sbjct: 321 ELGYNI-RSESQIIALETGSER-NTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNA 378

Query: 461 FHTREMIDKFVTDLLAVWKSLDLPL 485
             T   +D+ +         +DL  
Sbjct: 379 DLTASDLDRVLEVCREARDEVDLWF 403

Length = 407

>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase

 Score =  126 bits (319), Expect = 4e-32
 Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 10/181 (5%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND---STLFTLG 96
           +AL++ G G    R I G    H++LE  +A     E  +++ SC+ AN     TL    
Sbjct: 63  DALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAE 122

Query: 97  KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAFE 154
             I     ISDA NHAS+I G+R   A +  Y +ND+  L   L+       +  L+A +
Sbjct: 123 DAI-----ISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATD 177

Query: 155 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT 214
            V SM G I PL E+C+++ ++ AL  VDE HA G  G  G G  E  G +  +DII+GT
Sbjct: 178 GVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGT 237

Query: 215 L 215
           L
Sbjct: 238 L 238

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393

>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase

 Score =  124 bits (312), Expect = 1e-30
 Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 20/270 (7%)

Query: 215 LVNPEVAI------HASMIQGIR----NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 264
           L N +VAI      HAS+I G+R      +    +YRH D+ HL  +L +  +K  K+V 
Sbjct: 196 LKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCKMK-RKVVV 254

Query: 265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 324
            +++ SM G   P++EL ++  ++G L  +D+ H   + GE+G G+ E      ++D+  
Sbjct: 255 TDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCV 314

Query: 325 GTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
           GTL KA G  GG+I  +K +   I+S    FIF+T++P  + A A  A+ +++ +E    
Sbjct: 315 GTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAV-VVARKEKWRR 373

Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
           +A  + +  +     + I  P       II + +GN     K    LLK  G +V  I  
Sbjct: 374 KAIWERVKEFKALSGVDISSP-------IISLVVGNQEKALKASRYLLKS-GFHVMAIRP 425

Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDL 474
           PTVP    ++R+  +  HT E + K +T L
Sbjct: 426 PTVPPNSCRLRVTLSAAHTTEDVKKLITAL 455

Length = 476

>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional

 Score =  117 bits (294), Expect = 1e-28
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 13/257 (5%)

Query: 223 HASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE 280
           HAS+  ++GI           HND++ L  + +    K    VA + V+SM G   P+KE
Sbjct: 145 HASLNILKGICADETEVETIDHNDLDALEDICKTN--KTVAYVA-DGVYSMGGIA-PVKE 200

Query: 281 LCEVSHQHGALTFVDEVHAVGLYGEHGAG--IGERDGQLHNMDIISGTLGKAFGNIGGYI 338
           L  +  ++G   ++D+ H + +YG++G G    E D +L+   II+ +LGKAFG  GG I
Sbjct: 201 LLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVI 260

Query: 339 -VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN 397
            +G    I+ I  YA    F+ SL    L     +  I  S+E  +L+ K Q+ +A   +
Sbjct: 261 MLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALF-D 319

Query: 398 ELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457
            LI         P  +I   IG+     K     L ++G Y  P+ +P V  G   +R+ 
Sbjct: 320 SLIPTEQSGSFLPIRLIY--IGDEDTAIKAAK-QLLDRGFYTSPVFFPVVAKGRAGLRIM 376

Query: 458 PTPFHTREMIDKFVTDL 474
               HT + I +  + L
Sbjct: 377 FRASHTNDEIKRLCSLL 393

Length = 402

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  115 bits (289), Expect = 3e-28
 Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 21/192 (10%)

Query: 23  LSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--------Q 74
           L S +Y    G    + +A +     AGGTRN+ G +    +L E +AK           
Sbjct: 6   LGSNEYLGDSGTLPAVAKAEKDAL--AGGTRNLYGPTDGLPELREALAKFLGRSPVLKLD 63

Query: 75  KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYR----- 129
           +EA +VF S   AN   L  L ++ PG   +  A  + S I+  R +    + Y      
Sbjct: 64  REAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSN 123

Query: 130 --HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV---SHQHGALTFVDE 184
             H D + L   L+    +  K+V   + H+ TG +  L+EL ++   + +H  L  VDE
Sbjct: 124 DFHLDFDALEAALKE-ATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDE 182

Query: 185 VHAVGLYGEHGA 196
            +A  ++G   A
Sbjct: 183 AYAGFVFGSLDA 194

Length = 357

>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase

 Score =  112 bits (283), Expect = 9e-27
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 14/186 (7%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKM 98
           E+L+K+      +R   G +  H +LEE VA+   K A +VF   Y  N + +  L GK 
Sbjct: 126 ESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGK- 184

Query: 99  IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPK-------- 149
             G   ISD+ NH S++ G R S A   +++HN  +HL +VL E +    P+        
Sbjct: 185 --GGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKI 242

Query: 150 LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHNM 208
           +V  E ++SM G +C L E+  V  ++ A  ++DE H++G  G+ G G+ E  G    ++
Sbjct: 243 IVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADV 302

Query: 209 DIISGT 214
           DI+ GT
Sbjct: 303 DIMMGT 308

Length = 489

>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein; Provisional

 Score = 99.6 bits (248), Expect = 1e-22
 Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 41/290 (14%)

Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-----VKIP-----KLVAFETVHSM 271
           ++ +++ G+  S A    +RHND+  L +VLE +      +K       + +  E ++  
Sbjct: 91  VNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKN 150

Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ--LHNMDIISGTLGK 329
           TG + PLKEL  +  +      +DE  + G  G+ G G  E  G   + + +I++ +L  
Sbjct: 151 TGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLEN 210

Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI-RILSSQEGVELRAKH 388
           AFG++GG  VG++  +D  R   +G+ F+ S PP +      A    L+  + +    + 
Sbjct: 211 AFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLN---RL 267

Query: 389 QDIVAYLRNELIQIGFPVEHTP-----------SHIIPIKIGN-PALNTKICDMLLKEKG 436
            D +A L + L     P                S II +++ +  A       ++L +  
Sbjct: 268 HDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIA 327

Query: 437 HY------------VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL 474
           H+                 +  + V    +R+     HTRE IDK +T L
Sbjct: 328 HHSLSEGVAVVSTGGHVKKFLQL-VPPPCLRVVANASHTREDIDKLLTVL 376

Length = 392

>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase

 Score = 98.6 bits (245), Expect = 5e-22
 Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 17/196 (8%)

Query: 36  KCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL 95
                A +++G G  G+  I G + +H  LE  +A L +KE  LV  + + AN + +  +
Sbjct: 123 NAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAI 182

Query: 96  GKMIPGLH------------YISDAGNHASMIQGIR----NSSAPKIIYRHNDVNHLTQV 139
           G +   L               SDA NHAS+I G+R      +    +YRH D+ HL  +
Sbjct: 183 GSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSL 242

Query: 140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG 199
           L +  +K  K+V  +++ SM G   P++EL ++  ++G L  +D+ H   + GE+G G+ 
Sbjct: 243 LSSCKMK-RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVA 301

Query: 200 ERDGQLHNMDIISGTL 215
           E      ++D+  GTL
Sbjct: 302 EEFNCEADVDLCVGTL 317

Length = 476

>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 37/282 (13%)

Query: 229 GIRNS---SAPKIIY-RHNDVNHLTQVLENMDV------KIPKLVAFETVHSMTGAICPL 278
           GI+N    S   I+Y +HND+  L   LE +        K+ + +  E ++  +G I PL
Sbjct: 205 GIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPL 264

Query: 279 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHNMDIISGTLGKAFGNIGGY 337
            E+  +  ++     +DE ++ G+ G+ G G+ E  G  +  +DII+  +G A    GG+
Sbjct: 265 DEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGF 324

Query: 338 IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN 397
             G+   +D  R  ++G++F+ SLPP + + A  AI +L  ++   + AK ++ +A L  
Sbjct: 325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EDNPSVLAKLKENIALLHK 382

Query: 398 EL-----IQIGFPVEHTPSHIIPIKIGNPALNTK--------ICDMLLKEKGHYVQPINY 444
            L     + IG    +T S I+ + +     + K        I D +LKE    V     
Sbjct: 383 GLSDIPGLSIG---SNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKR 439

Query: 445 PTV-----PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
            T+     PVG   IRL  +  HT   I K    L  V  S+
Sbjct: 440 STLDKCRLPVG---IRLFVSAGHTESDILKASESLKRVAASV 478

Length = 481

>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional

 Score = 91.2 bits (227), Expect = 9e-20
 Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 7/152 (4%)

Query: 65  LEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLH-YISDAGNHASMIQGIRNSSA 123
            E+ +A     E+ L+  S + AN   L T+    P    YI D   H S+ +G+R + A
Sbjct: 104 FEKKLAAFTGFESCLLCQSGWAANVGLLQTIAD--PNTPVYI-DFFAHMSLWEGVRAAGA 160

Query: 124 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 183
               +RHNDV+HL + +E      P ++  ++V+S TG I PL ++ +++ + G +  VD
Sbjct: 161 QAHPFRHNDVDHLRRQIERHG---PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD 217

Query: 184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
           E H++G +G  GAG+    G    +  I+ +L
Sbjct: 218 ESHSLGTHGPQGAGLVAELGLTSRVHFITASL 249

Length = 407

>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional

 Score = 89.1 bits (221), Expect = 3e-19
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 48  GAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISD 107
           G GG+R I G S   + LE  +A  H      +  S Y+AN      L  +   + +  D
Sbjct: 44  GYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLW--D 101

Query: 108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV----KIPKLVAFETVHSMTGAI 163
              H S++  +   S     +RHND++HL  +LE+       +I   V   +V+S  G +
Sbjct: 102 EQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVC--SVYSFKGTL 159

Query: 164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI 198
            PL+++  +S ++ A   VDE HA+G++G+ G G 
Sbjct: 160 APLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF 194

Length = 370

>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein; Provisional

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 14/195 (7%)

Query: 35  RKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT 94
           R+   E+L  +G G+ G R   G    H +LE+ +A+    E+ ++++       ST+  
Sbjct: 18  RQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAA 77

Query: 95  LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-----VKIP- 148
             K   G   + D G + +++ G+  S A    +RHND+  L +VLE +      +K   
Sbjct: 78  FAKR--GDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKP 135

Query: 149 ----KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 204
               + +  E ++  TG + PLKEL  +  +      +DE  + G  G+ G G  E  G 
Sbjct: 136 TDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGL 195

Query: 205 --LHNMDIISGTLVN 217
             + + +I++ +L N
Sbjct: 196 KPMVHAEIVTFSLEN 210

Length = 392

>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 20/257 (7%)

Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV----KIPKLVAFETVHSMTGAICP 277
           +H S++  +   S     +RHND++HL  +LE+       +I   V   +V+S  G + P
Sbjct: 104 VHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVC--SVYSFKGTLAP 161

Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGY 337
           L+++  +S ++ A   VDE HA+G++G+ G G     G   N   +  T  KA G++G  
Sbjct: 162 LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG-YENFYAVLVTYSKALGSMGAA 220

Query: 338 IVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN 397
           ++ +      +   +    ++T LPP +L   + A   L SQEG   R +   +  Y   
Sbjct: 221 LLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL-SQEGELARKQLFRLKEYFAQ 279

Query: 398 ELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457
              +        P  + PI +  P ++ +     L E G  V  + +PT P     +R+ 
Sbjct: 280 ---KFSS---AAPGCVQPIFL--PGISEQELYSKLVETGIRVGVVCFPTGPF----LRVN 327

Query: 458 PTPFHTREMIDKFVTDL 474
              F+T + +D  V+ L
Sbjct: 328 LHAFNTEDEVDILVSVL 344

Length = 370

>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase

 Score = 67.5 bits (165), Expect = 6e-12
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 19/185 (10%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
            ALEK+G G+ G R   G    H   E  +AK       ++    Y    ST+F++   I
Sbjct: 134 SALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSIL----YSYGLSTIFSV---I 186

Query: 100 P-----GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV------KIP 148
           P     G   ++D G H  +  G+  S +  + ++HND+  L   LE +        K+ 
Sbjct: 187 PAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLR 246

Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHN 207
           + +  E ++  +G I PL E+  +  ++     +DE ++ G+ G+ G G+ E  G  +  
Sbjct: 247 RYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEK 306

Query: 208 MDIIS 212
           +DII+
Sbjct: 307 IDIIT 311

Length = 481

>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 65  LEEDVAKLHQKEAGLVFTSCYVANDSTL-------FTLGKMIPGLHYISDAGNHASM--I 115
           LEE +++L      L FTSC  A+   L        T G      H + D   HAS+  +
Sbjct: 96  LEEALSELFGASV-LTFTSCSAAHLGILPLLASGHLTGGVPP---HMVFDKNAHASLNIL 151

Query: 116 QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175
           +GI           HND++ L  + +    K    VA + V+SM G   P+KEL  +  +
Sbjct: 152 KGICADETEVETIDHNDLDALEDICKTN--KTVAYVA-DGVYSMGGIA-PVKELLRLQEK 207

Query: 176 HGALTFVDEVHAVGLYGEHGAG--IGERDGQLHNMDIISGTL 215
           +G   ++D+ H + +YG++G G    E D +L+   II+ +L
Sbjct: 208 YGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASL 249

Length = 402

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 9/147 (6%)

Query: 61  FHEKLEEDVAKLHQK--EAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGI 118
             E+LEE +A+L Q   +  +   S   AN++ L  L    PG   I DA  H S     
Sbjct: 1   KLEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--PGDEVIVDANGHGSRYWVA 58

Query: 119 RNSSAPKII-YRHND----VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS 173
              +  K +    +D       +  + E        L+      +  G + PLKE+ +++
Sbjct: 59  AELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIA 118

Query: 174 HQHGALTFVDEVHAVGLYGEHGAGIGE 200
            ++G L  VD   A G     G  I E
Sbjct: 119 KEYGILLLVDAASAGGASPAPGVLIPE 145

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 51/257 (19%), Positives = 90/257 (35%), Gaps = 48/257 (18%)

Query: 250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG-------- 301
             LE +     KLVA   V ++TG + P+KE+ E++H+HGAL  VD   A G        
Sbjct: 153 DALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQE 212

Query: 302 -------------LYGEHGAGI--GERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFID 346
                        L G  G G+    ++            L    G  GG ++   +  +
Sbjct: 213 LGCDFLAFSGHKWLLGPTGIGVLYVRKELL--------EELEPFLG--GGGMIEYVSRDE 262

Query: 347 TIRSYAAGFIFTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP 405
            +        F    P    A G   A+  L       + A  +++  YL   L ++   
Sbjct: 263 GVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGV 322

Query: 406 VEHTP-----SHIIPIKIGNPALNTKICDMLLKEK------GHYVQPINYPTVPVGEEKI 454
             + P       I+   +        +  +L ++        H  QP     +   +  I
Sbjct: 323 EIYGPPDADRGGIVSFNVKGIH-PHDVATLLDEKGIAVRAGHHCAQP--LHRLLGVDATI 379

Query: 455 RLAPTPFHTREMIDKFV 471
           R +   ++T E +D+ +
Sbjct: 380 RASLHLYNTEEDVDRLL 396

Length = 405

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 31/203 (15%)

Query: 272 TGAICP---LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTL 327
           TGA+     L+EL E++ +HG L   DE +A  L Y                + I+  + 
Sbjct: 145 TGAVLSEEELEELAELAKKHGILIISDEAYA-ELVYDGEPPPALALLDAYERV-IVLRSF 202

Query: 328 GKAFGNIG---GYIVGTKN-FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEG-- 381
            K FG  G   GY++      ++ ++       +TTS P T+   A  A   L   E   
Sbjct: 203 SKTFGLPGLRIGYLIAPPEELLERLKKLL---PYTTSGPSTLSQAA--AAAALDDGEEHL 257

Query: 382 VELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGN-------PALNTKICDMLLKE 434
            ELR +++     L   L ++G  V   PS       G           + +  + LL E
Sbjct: 258 EELRERYRRRRDALLEALKELGPLVVVKPSG------GFFLWLDLPEGDDEEFLERLLLE 311

Query: 435 KGHYVQPINYPTVPVGEEKIRLA 457
            G  V+P +      GE  +RL+
Sbjct: 312 AGVVVRPGSAF-GEGGEGFVRLS 333

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE 305
             +  + E        L+      +  G + PLKE+ +++ ++G L  VD   A G    
Sbjct: 79  LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA 138

Query: 306 HGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
            G  I E        D+++ +L K  G  GG +V  K
Sbjct: 139 PGVLIPEGGA-----DVVTFSLHKNLGGEGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 63  EKLEEDVAKL--HQKEAGLVFTSCYVANDST---LFTLGKMI-PGLHYISDAGNHASMI- 115
           E   E VA+         +VFT      ++       LG+ + PG   +     H S I 
Sbjct: 69  EAAREAVARFLNADSSDEIVFTRG--TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIV 126

Query: 116 --QGIRNSSAPKIIYRHNDVNHL--TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171
             Q +   +  K+     D + L     LE +     KLVA   V ++TG + P+KE+ E
Sbjct: 127 PWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAE 186

Query: 172 VSHQHGALTFVDEVHAVG 189
           ++H+HGAL  VD   A G
Sbjct: 187 LAHEHGALVLVDAAQAAG 204

Length = 405

>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 34/168 (20%)

Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL 317
           P +    TVH    TG + PL+ + +V+  HGA+  VD + + G        I E D   
Sbjct: 124 PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA---IPIDIEELD--- 177

Query: 318 HNMDIISGTLGKAFGNIGG--YIVGTKNFI----DTIRSYAAGFI-------------FT 358
             +D +  +  K    + G  +++  ++ +       RS                   FT
Sbjct: 178 --VDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFT 235

Query: 359 TSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGF 404
              PPT  +    +A+  L ++ GV  R A+++     L + L  +GF
Sbjct: 236 ---PPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGF 280

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 36/169 (21%)

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
           K VA     + TG + PLKE+ + + +HGAL  VD V ++G       G   +  +   +
Sbjct: 133 KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG-------GEPLKVDEWG-I 184

Query: 321 DIISGTLGKAFG---------------------NIGGYIVGTKNFIDTIRSYAAGFIFTT 359
           D+      KA G                         + +  K ++  +    +   +T 
Sbjct: 185 DVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGS-TPYT- 242

Query: 360 SLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFPV 406
             PP  ++   REA+ ++  +EG+E R A+H+ +   LR  L  +G  +
Sbjct: 243 --PPVNLIYALREALDLI-LEEGLEARIARHRRLAEALRAGLEALGLEL 288

Length = 383

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 60/259 (23%), Positives = 92/259 (35%), Gaps = 49/259 (18%)

Query: 240 YRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHGALTF 293
                 + L  + E ++    ++ A   E +    G I P    LK L E+  +HG L  
Sbjct: 170 PPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLI 229

Query: 294 VDEVHA-VGLYGEHGAGIGERDGQLHNM--DIISGTLGKAFGN---IGGYIVGTKNFIDT 347
            DEV    G  G+  A       +   +  DI+  TLGK  G    +G  + G +  +D 
Sbjct: 230 ADEVQTGFGRTGKMFA------FEHFGVEPDIV--TLGKGLGGGLPLGAVL-GREEIMDA 280

Query: 348 IRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFP 405
             +       T    P   A A   + +L   EG+   A   ++  YLR  L ++    P
Sbjct: 281 FPAGPGLHGGTFGGNPLACAAALAVLEVLEE-EGLLENA--AELGEYLRERLRELAEKHP 337

Query: 406 -------------VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE 452
                        +E         K  +  L  KI      E+G  ++       P G  
Sbjct: 338 LVGDVRGRGLMIGIELVKDR--ATKPPDKELAAKIIK-AALERGLLLR-------PSGGN 387

Query: 453 KIRLAPTPFHTREMIDKFV 471
            IRL P    T E ID+ +
Sbjct: 388 VIRLLPPLIITEEEIDEGL 406

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 17/146 (11%)

Query: 62  HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDA----GNHASMIQG 117
            + LE+ +A L   EA L F+S   A  + L  L K   G H ++      G +      
Sbjct: 42  VDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK--AGDHVVASDDLYGGTYR----- 94

Query: 118 IRNSSAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175
           +     PK  I     D +    +   +  +  KLV  E+  + T  +  ++ + E++H+
Sbjct: 95  LFERLLPKLGIEVTFVDPDDPEALEAAIKPE-TKLVYVESPTNPTLKVVDIEAIAELAHE 153

Query: 176 HGALTFVDEVHAVGLYG---EHGAGI 198
           HGAL  VD   A        E GA I
Sbjct: 154 HGALLVVDNTFATPYLQRPLELGADI 179

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 41/182 (22%)

Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
            K V      + TG + PL+ +  ++ +H AL  VD V ++G                  
Sbjct: 125 IKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFR------------- 171

Query: 320 MD------IISGTLGKAFGNIGG--YIVGTKNFIDTIRS-----------------YAAG 354
           MD        +G+  KA G   G   I  ++  ++ I+                  +  G
Sbjct: 172 MDEWGVDVAYTGS-QKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEG 230

Query: 355 FIFTTSLPPTVLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFPVEHTPSHI 413
           + +  + P  +L   REA+ ++  +EG+E R A+H+ +   LR  L  +G  +   P   
Sbjct: 231 YSYPHTPPVNLLYALREALDLI-LEEGLENRWARHRRLAKALREGLEALGLKLLAKPELR 289

Query: 414 IP 415
            P
Sbjct: 290 SP 291

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 36/169 (21%)

Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG------------------ 301
            KLVA   V ++TG + P++E+ +++H++GAL  VD   AVG                  
Sbjct: 140 TKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGVDFLAFSG 199

Query: 302 --LYGEHGAGIGE---RDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFI 356
             LYG    GIG    R   L  +  + G         GG ++ T   +       A   
Sbjct: 200 HKLYGP--TGIGVLYGRRDLLEKLPPLLG---------GGGMIDTV-SLQETTFADAPSK 247

Query: 357 FTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
           F    P      G   A+  L+      +    +++ AYL   L+ I  
Sbjct: 248 FEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPG 296

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
            KLVA   V ++TG + P++E+ +++H++GAL  VD   AVG
Sbjct: 140 TKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVG 181

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 39/180 (21%)

Query: 252 LENMDVKI---PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD----------EVH 298
           L++++  +    KLVA   V ++ G + P++E+ +++HQ GA   VD          +V 
Sbjct: 149 LDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQ 208

Query: 299 AVG----------LYGEHGAGI--GERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFID 346
           A+           +YG  G G+  G+ +  L  M    G         GG ++   +F +
Sbjct: 209 ALDCDFYVFSGHKMYGPTGIGVLYGKEE-LLEQMPPFLG---------GGEMIAEVSFEE 258

Query: 347 TIRSYA-AGFIFTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF 404
           T  +Y  A   F    P      G   AI  L +     + A   ++ AY    L +I  
Sbjct: 259 T--TYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPG 316

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 140 LENMDVKI---PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
           L++++  +    KLVA   V ++ G + P++E+ +++HQ GA   VD   AV
Sbjct: 149 LDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAV 200

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           K VA     + TG + PLKE+ + + +HGAL  VD V ++G
Sbjct: 133 KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG 173

Length = 383

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 40.1 bits (95), Expect = 0.002
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           KLVA   V ++ G I P+KE+ E++H+ G    VD   + G
Sbjct: 141 KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAG 181

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 40.1 bits (95), Expect = 0.002
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           KLVA   V ++ G I P+KE+ E++H+ G    VD   + G
Sbjct: 141 KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAG 181

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 60/232 (25%), Positives = 86/232 (37%), Gaps = 46/232 (19%)

Query: 194 HGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK-IIYRHNDVNHLTQVL 252
           HG      D  L      + TL +P          G+    A   ++  +ND+  L +  
Sbjct: 146 HGHS----DSLLVKAGSGAATLGSPSSP-------GVPADVAKHTLVLPYNDLEALEEAF 194

Query: 253 ENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA---VGLYGE 305
           E     I   V  E V    G + P    L+ L E++ +HGAL   DEV     V L G 
Sbjct: 195 EEYGDDIAA-VIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGA 253

Query: 306 HGA-GIGERDGQLHNMDIISGTLGKAFGNIGGY----IVGTKNFIDTI----RSYAAGFI 356
            G  G+          D+   TLGK  G  GG       G    ++ +      Y AG  
Sbjct: 254 QGYYGV--------EPDLT--TLGKIIG--GGLPIGAFGGRAEIMEQLAPLGPVYQAG-- 299

Query: 357 FTTSLPPTVLAGAREAIRILSSQEGV--ELRAKHQDIVAYLRNELIQIGFPV 406
            T S  P  +A     +  L ++EGV   L A  + +   LR    + G P+
Sbjct: 300 -TLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPL 350

Length = 432

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 63  EKLEEDVAKL-HQKEAGLVFTSCYVANDST-----LFTLGKMIPGLHYISDAGNHASMIQ 116
           E+  E +AKL       ++FTS    +++               G H I+ A  H +++ 
Sbjct: 47  EEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLN 106

Query: 117 GIRNSSAPKIIYRHNDVNH-----LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE 171
             R          +  V+      L Q+ E +      LV+    ++ TG I P+ E+ E
Sbjct: 107 TCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTI-LVSIMHANNETGTIQPIAEIGE 165

Query: 172 VSHQHGALTFVDEVHAVG 189
           +  + G L  VD V AVG
Sbjct: 166 ICKERGILFHVDAVQAVG 183

Length = 386

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 23/102 (22%)

Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG---EHGAGIGERDGQ 316
            KLV  ET  +    +  +  +  ++  +GAL  VD   A  +     E GA        
Sbjct: 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGA-------- 201

Query: 317 LHNMDII--SGTLGKAFG----NIGGYIVGTKNFIDTIRSYA 352
               DI+  S T  K  G     +GG ++     +  +  +A
Sbjct: 202 ----DIVVHSAT--KYLGGHSDVLGGVVLTPNEELYELLFFA 237

Length = 396

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 16/141 (11%)

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
           +LVA     +  G+I  L  + E+ H  GAL  VD VH    Y  HG      D Q    
Sbjct: 158 RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH----YAPHGL----IDVQATGA 209

Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTT--------SLPPTVLAGAREA 372
           D ++ +  K FG   G + G    +  +  Y   F + T        +    +LAG   A
Sbjct: 210 DFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAA 269

Query: 373 IRILSSQEGVELRAKHQDIVA 393
           +  L+        ++ + +VA
Sbjct: 270 VDYLAGLGESANGSRRERLVA 290

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 17/146 (11%)

Query: 62  HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISD----AGNHASMIQG 117
            + LEE +A L   EA L F+S   A  + L  L K   G H ++      G +      
Sbjct: 54  RDALEERIAALEGGEAALAFSSGMAAIFAALLALLK--AGDHVVATDDLYGGTYRLF--- 108

Query: 118 IRNSSAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ 175
                 P+  I     D + L  +   +     K V  ET  +    +  ++ + +++ +
Sbjct: 109 --EKVLPRFGIEVTFVDPSDLDALEAAIKPN-TKAVFLETPTNPLLKVVDIEAIAKIAKK 165

Query: 176 HGALTFVDEVHAVGLYG---EHGAGI 198
           HGAL  VD   A        E GA I
Sbjct: 166 HGALVVVDNTFASPYLQRPLELGADI 191

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	100.0
KOG1360|consensus	570		100.0
PLN02955	476	8-amino-7-oxononanoate synthase	100.0
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	100.0
PRK13393	406	5-aminolevulinate synthase; Provisional	100.0
PRK09064	407	5-aminolevulinate synthase; Validated	100.0
KOG1359|consensus	417		100.0
PRK13392	410	5-aminolevulinate synthase; Provisional	100.0
PLN02822	481	serine palmitoyltransferase	100.0
PRK07179	407	hypothetical protein; Provisional	100.0
PLN02483	489	serine palmitoyltransferase	100.0
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	100.0
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	100.0
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	100.0
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	100.0
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	100.0
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	100.0
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	100.0
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PRK07505	402	hypothetical protein; Provisional	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.98
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.98
KOG1357|consensus	519		99.98
PLN00175	413	aminotransferase family protein; Provisional	99.97
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.97
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.97
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.97
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.97
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.97
PRK09082	386	methionine aminotransferase; Validated	99.97
PRK07682	378	hypothetical protein; Validated	99.97
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.97
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.97
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.97
PRK12414	384	putative aminotransferase; Provisional	99.97
PRK07681	399	aspartate aminotransferase; Provisional	99.97
PRK06207	405	aspartate aminotransferase; Provisional	99.97
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.97
PRK06108	382	aspartate aminotransferase; Provisional	99.97
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.97
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.97
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.97
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.97
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.97
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.97
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.97
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.97
PRK08960	387	hypothetical protein; Provisional	99.97
PRK05957	389	aspartate aminotransferase; Provisional	99.97
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.97
PRK08068	389	transaminase; Reviewed	99.97
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.97
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.96
PLN00144	382	acetylornithine transaminase	99.96
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.96
PRK08912	387	hypothetical protein; Provisional	99.96
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.96
PRK05942	394	aspartate aminotransferase; Provisional	99.96
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.96
KOG1358|consensus	467		99.96
PRK07324	373	transaminase; Validated	99.96
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.96
PRK06348	384	aspartate aminotransferase; Provisional	99.96
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.96
PRK05764	393	aspartate aminotransferase; Provisional	99.96
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.96
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.96
PRK09148	405	aminotransferase; Validated	99.96
PRK07683	387	aminotransferase A; Validated	99.96
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.96
PRK06290	410	aspartate aminotransferase; Provisional	99.96
PRK08636	403	aspartate aminotransferase; Provisional	99.96
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.96
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.96
PTZ00433	412	tyrosine aminotransferase; Provisional	99.96
PLN02624	474	ornithine-delta-aminotransferase	99.96
PRK07550	386	hypothetical protein; Provisional	99.96
PRK07337	388	aminotransferase; Validated	99.96
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.96
PRK06107	402	aspartate aminotransferase; Provisional	99.96
PRK07482	461	hypothetical protein; Provisional	99.96
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.96
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.96
PRK08361	391	aspartate aminotransferase; Provisional	99.96
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.96
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.96
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.96
KOG0257|consensus	420		99.96
PRK06225	380	aspartate aminotransferase; Provisional	99.96
PRK08175	395	aminotransferase; Validated	99.96
PRK05965	459	hypothetical protein; Provisional	99.96
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.96
PRK07678	451	aminotransferase; Validated	99.96
PRK07777	387	aminotransferase; Validated	99.96
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.96
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.96
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.96
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.96
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.96
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.96
PRK08363	398	alanine aminotransferase; Validated	99.96
PLN02187	462	rooty/superroot1	99.96
PRK06062	451	hypothetical protein; Provisional	99.96
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.96
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.96
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.96
PRK02948	381	cysteine desulfurase; Provisional	99.96
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.96
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.96
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.95
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.95
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.95
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.95
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.95
PRK06541	460	hypothetical protein; Provisional	99.95
PRK02627	396	acetylornithine aminotransferase; Provisional	99.95
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.95
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.95
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.95
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.95
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.95
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.95
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.95
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.95
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.95
PRK07483	443	hypothetical protein; Provisional	99.95
PRK12403	460	putative aminotransferase; Provisional	99.95
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.95
PLN02656	409	tyrosine transaminase	99.95
PTZ00377	481	alanine aminotransferase; Provisional	99.95
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.95
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.95
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.95
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.95
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.95
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.95
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.95
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.95
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.95
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.95
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.95
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.95
PRK06855	433	aminotransferase; Validated	99.95
PRK06105	460	aminotransferase; Provisional	99.95
PRK07480	456	putative aminotransferase; Validated	99.95
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.95
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.95
PRK05839	374	hypothetical protein; Provisional	99.95
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.95
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.95
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.95
PRK07046	453	aminotransferase; Validated	99.95
PLN02409	401	serine--glyoxylate aminotransaminase	99.95
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.95
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.95
PRK06917	447	hypothetical protein; Provisional	99.95
PRK09105	370	putative aminotransferase; Provisional	99.95
PRK07036	466	hypothetical protein; Provisional	99.95
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.95
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.95
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.95
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.95
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.95
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.95
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.94
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.94
PRK07481	449	hypothetical protein; Provisional	99.94
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.94
PRK07568	397	aspartate aminotransferase; Provisional	99.94
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.94
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.94
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.94
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.94
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.94
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.94
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.94
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.94
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.94
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.94
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.94
KOG1402|consensus	427		99.94
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.94
PRK06149	972	hypothetical protein; Provisional	99.94
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.94
PRK04260	375	acetylornithine aminotransferase; Provisional	99.94
PRK08297	443	L-lysine aminotransferase; Provisional	99.94
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.94
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.94
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.94
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.94
PLN02651	364	cysteine desulfurase	99.94
PRK06148	1013	hypothetical protein; Provisional	99.94
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.94
PRK07908	349	hypothetical protein; Provisional	99.94
PLN02231	534	alanine transaminase	99.94
PLN02721	353	threonine aldolase	99.94
KOG1404|consensus	442		99.94
PRK09265	404	aminotransferase AlaT; Validated	99.94
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.94
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.94
PRK03321	352	putative aminotransferase; Provisional	99.94
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.94
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.94
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.94
KOG0259|consensus	447		99.93
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.93
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.93
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.93
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.93
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.93
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.93
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.93
PRK10534	333	L-threonine aldolase; Provisional	99.93
PRK06836	394	aspartate aminotransferase; Provisional	99.93
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.93
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.93
PLN02672	1082	methionine S-methyltransferase	99.93
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.93
PRK14012	404	cysteine desulfurase; Provisional	99.93
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.93
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.93
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.92
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.92
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.92
PRK08354	311	putative aminotransferase; Provisional	99.92
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.92
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.92
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.92
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.92
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.92
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.92
PLN02397	423	aspartate transaminase	99.92
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.92
PTZ00376	404	aspartate aminotransferase; Provisional	99.92
PRK09275	527	aspartate aminotransferase; Provisional	99.92
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.92
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.91
KOG1401|consensus	433		99.91
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.91
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.91
PLN02242	418	methionine gamma-lyase	99.91
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.91
PRK08637	388	hypothetical protein; Provisional	99.91
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.9
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.9
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.9
KOG1368|consensus	384		99.9
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.9
PRK06234	400	methionine gamma-lyase; Provisional	99.9
PLN02724	805	Molybdenum cofactor sulfurase	99.9
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.9
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.9
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.9
KOG0634|consensus	472		99.9
PRK05968	389	hypothetical protein; Provisional	99.9
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.89
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.89
PRK06767	386	methionine gamma-lyase; Provisional	99.89
PRK08249	398	cystathionine gamma-synthase; Provisional	99.89
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.89
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.89
PRK06460	376	hypothetical protein; Provisional	99.89
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.89
KOG1403|consensus	452		99.89
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.89
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.89
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.89
PRK08574	385	cystathionine gamma-synthase; Provisional	99.88
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.88
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.88
PRK02769	380	histidine decarboxylase; Provisional	99.88
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.88
KOG1549|consensus	428		99.88
PRK07503	403	methionine gamma-lyase; Provisional	99.88
PRK08064	390	cystathionine beta-lyase; Provisional	99.88
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.88
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.88
KOG0256|consensus	471		99.87
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.87
PRK09028	394	cystathionine beta-lyase; Provisional	99.87
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.87
PRK07050	394	cystathionine beta-lyase; Provisional	99.87
PRK07811	388	cystathionine gamma-synthase; Provisional	99.87
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.87
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.87
PRK07049	427	methionine gamma-lyase; Validated	99.87
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.87
PLN02509	464	cystathionine beta-lyase	99.86
PRK08861	388	cystathionine gamma-synthase; Provisional	99.86
PRK08776	405	cystathionine gamma-synthase; Provisional	99.86
PRK08114	395	cystathionine beta-lyase; Provisional	99.86
PLN02368	407	alanine transaminase	99.86
PRK08045	386	cystathionine gamma-synthase; Provisional	99.86
PLN03032	374	serine decarboxylase; Provisional	99.86
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.86
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.85
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.85
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.85
PRK05939	397	hypothetical protein; Provisional	99.85
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.85
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.85
PRK05967	395	cystathionine beta-lyase; Provisional	99.85
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.85
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.85
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.85
PLN02271	586	serine hydroxymethyltransferase	99.85
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.84
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK07671	377	cystathionine beta-lyase; Provisional	99.84
PRK07582	366	cystathionine gamma-lyase; Validated	99.84
PRK03080	378	phosphoserine aminotransferase; Provisional	99.84
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.83
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.83
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.83
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.82
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.82
PRK13237	460	tyrosine phenol-lyase; Provisional	99.81
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.81
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.81
PRK15029	755	arginine decarboxylase; Provisional	99.8
PRK04311	464	selenocysteine synthase; Provisional	99.8
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.8
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.8
PRK06434	384	cystathionine gamma-lyase; Validated	99.8
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.79
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.79
PRK12566	954	glycine dehydrogenase; Provisional	99.78
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.77
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.77
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.77
PRK05367	954	glycine dehydrogenase; Provisional	99.76
KOG1405|consensus	484		99.75
PLN02263	470	serine decarboxylase	99.75
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.75
KOG0633|consensus	375		99.74
KOG2862|consensus	385		99.74
KOG0053|consensus	409		99.74
PLN02590	539	probable tyrosine decarboxylase	99.73
PRK13578	720	ornithine decarboxylase; Provisional	99.73
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.73
PLN02880	490	tyrosine decarboxylase	99.73
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.73
PRK15400	714	lysine decarboxylase CadA; Provisional	99.72
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.72
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.71
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.69
PRK05367	954	glycine dehydrogenase; Provisional	99.68
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.66
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.66
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.65
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.64
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.64
PLN02452	365	phosphoserine transaminase	99.61
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.58
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.54
KOG0258|consensus	475		99.54
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.51
PRK12462	364	phosphoserine aminotransferase; Provisional	99.47
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.45
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.41
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.4
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.39
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.36
KOG2467|consensus	477		99.29
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.29
COG4100	416	Cystathionine beta-lyase family protein involved i	99.25
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.25
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.24
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.24
KOG1383|consensus	491		99.2
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.14
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.12
PRK12566	954	glycine dehydrogenase; Provisional	99.03
KOG2040|consensus	1001		98.93
KOG1412|consensus	410		98.89
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.83
KOG3846|consensus	465		98.74
KOG1411|consensus	427		98.74
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.72
KOG0628|consensus	511		98.69
KOG0629|consensus	510		98.63
KOG1360|consensus	570		98.61
PLN02955	476	8-amino-7-oxononanoate synthase	97.75
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	97.45
KOG1357|consensus	519		97.38
KOG2040|consensus	1001		97.2
KOG2790|consensus	370		96.9
KOG3843|consensus	432		96.62
PRK06425	332	histidinol-phosphate aminotransferase; Validated	96.61
PLN02822	481	serine palmitoyltransferase	96.33
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	96.02
KOG1358|consensus	467		95.76
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	95.54
PRK09064	407	5-aminolevulinate synthase; Validated	95.47
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	95.41
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	95.39
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	95.28
PRK13393	406	5-aminolevulinate synthase; Provisional	95.18
PRK03244	398	argD acetylornithine aminotransferase; Provisional	94.8
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	94.72
PLN02483	489	serine palmitoyltransferase	94.71
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	94.38
PRK13392	410	5-aminolevulinate synthase; Provisional	94.24
KOG1359|consensus	417		94.13
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	93.94
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	93.66
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	93.64
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	93.42
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	93.29
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	92.89
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	92.87
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	92.76
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	92.46
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	92.42
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	92.07
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	91.8
PRK05939	397	hypothetical protein; Provisional	91.42
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	91.2
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	91.16
PRK03715	395	argD acetylornithine transaminase protein; Provisi	91.08
PRK07179	407	hypothetical protein; Provisional	90.9
TIGR01814	406	kynureninase kynureninase. This model describes ky	90.69
PRK06234	400	methionine gamma-lyase; Provisional	90.53
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	90.5
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	90.07
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	90.04
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	90.02
PRK07503	403	methionine gamma-lyase; Provisional	89.68
PRK06062	451	hypothetical protein; Provisional	89.57
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	88.6
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	88.53
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	87.56
PRK14012	404	cysteine desulfurase; Provisional	87.52
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	87.45
PRK02948	381	cysteine desulfurase; Provisional	87.44
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	87.35
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	87.32
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	86.85
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	86.75
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	86.61
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	86.59
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	86.58
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	86.46
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	86.34
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	86.19
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	86.03
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	85.99
PRK06460	376	hypothetical protein; Provisional	85.69
PRK10874	401	cysteine sulfinate desulfinase; Provisional	85.62
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	84.53
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	84.34
PRK06541	460	hypothetical protein; Provisional	84.05
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	83.83
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	83.68
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	83.49
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	83.39
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	83.39
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	82.93
PRK13580	493	serine hydroxymethyltransferase; Provisional	82.89
PLN02651	364	cysteine desulfurase	81.73
PRK08064	390	cystathionine beta-lyase; Provisional	81.24
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	80.92
PRK08247	366	cystathionine gamma-synthase; Reviewed	80.68
PLN02409	401	serine--glyoxylate aminotransaminase	80.01

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=100.00  E-value=7.4e-49  Score=388.89  Aligned_cols=345  Identities=42%  Similarity=0.624  Sum_probs=310.3

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|+.++||+|||||+   ||++.+++.+++++||.+.++++...|+.+.+.++|+++|+++|.+.+++++||..||..++
T Consensus        37 ~~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i  116 (388)
T COG0156          37 DGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLL  116 (388)
T ss_pred             CCceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHH
Confidence            568899999999997   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccC--CCcEEEeeccccccCCccchhHHh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK--IPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      .++.+  ++|.|+.|...|.|+++++++.+++++.|+|+|+++||+.|.+....  ++++|++||+|+|+|++|      
T Consensus       117 ~~l~~--~~dli~~D~lnHASiidG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA------  188 (388)
T COG0156         117 SALLK--KGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA------  188 (388)
T ss_pred             HHhcC--CCcEEEEechhhhhHHHHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC------
Confidence            99987  99999999999999999999999999999999999999999985433  578999999998887777      


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (388)
T COG0156         189 --------------------------------------------------------------------------------  188 (388)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCc-cCceEEEcCCcc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLGK  329 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~-~~~di~~~S~sK  329 (514)
                                                ||++|.+++++|+.++++||+|+.|.+|+.|+++.+..+.. .+.||+++||+|
T Consensus       189 --------------------------pL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsK  242 (388)
T COG0156         189 --------------------------PLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGK  242 (388)
T ss_pred             --------------------------CHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchh
Confidence                                      46666667777777777777777777777777777666653 456999999999


Q ss_pred             cccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       330 ~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      ++|..||++.++..+++.+.....++.|+++.||..++++.++++.+.+  ..+.+++++++..+++..+...++.+.++
T Consensus       243 AlGs~Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~--~~~~r~~L~~~~~~~~~~~~~~~~~~~~s  320 (388)
T COG0156         243 ALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEE--GPERRERLQELAAFFRSLLKALGLVLLPS  320 (388)
T ss_pred             hhcccCceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence            9999899999999999999999999999999999999999999998753  34688999999999998777778888788


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .++++++.+.++..+.++...|+ ++||++.+..+|+.|.+...+|++++..+|++||+++++.+.++
T Consensus       321 ~s~I~pv~~gd~~~a~~~s~~l~-~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         321 ESPIIPVILGDEERALEASRALL-EEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCCeeeeEeCCHHHHHHHHHHHH-HCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            89999999998878889999997 66999999999999999999999999999999999999998864

>KOG1360|consensus

Probab=100.00  E-value=1e-47  Score=362.88  Aligned_cols=368  Identities=57%  Similarity=0.945  Sum_probs=342.2

Q ss_pred             ceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhh
Q psy16848         18 RVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        18 ~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~   94 (514)
                      ..+.=++|+||++   ||+|.+|+.+.++++|.+.++++...|....+.++|+.+|++.+++.+++|+|+..||.+.|.+
T Consensus       171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLft  250 (570)
T KOG1360|consen  171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFT  250 (570)
T ss_pred             CceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHH
Confidence            3455568999996   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      |.++-||=+|+.+...|.|++.+++..+.+-..|+|+|+++|+++|++.+...||+|.|+.+|+|+|.+||+.++|.+++
T Consensus       251 Lak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah  330 (570)
T KOG1360|consen  251 LAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH  330 (570)
T ss_pred             HHHHCCCcEEeccccchHHHHHHhhhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence            99888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                      ++|+..++|+.|++|+||++|.||.+                                                      
T Consensus       331 ~yGAiTFlDEVHAVGlYG~rGaGvge------------------------------------------------------  356 (570)
T KOG1360|consen  331 KYGAITFLDEVHAVGLYGPRGAGVGE------------------------------------------------------  356 (570)
T ss_pred             HhCceeeeehhhhhccccCCCCCccc------------------------------------------------------
Confidence            99999999999999999999988532                                                      


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI  334 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~  334 (514)
                                                                                .+++....||+.++++|+||+-
T Consensus       357 ----------------------------------------------------------rdGvm~kvDiIsGTLgKafGcV  378 (570)
T KOG1360|consen  357 ----------------------------------------------------------RDGVMHKVDIISGTLGKAFGCV  378 (570)
T ss_pred             ----------------------------------------------------------cCCcchhhhhcccchhhhcccc
Confidence                                                                      1223346899999999999999


Q ss_pred             CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcEE
Q psy16848        335 GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHII  414 (514)
Q Consensus       335 GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  414 (514)
                      |||+.....+++.++.+..+|+|+++.||..++.++.+.+++..++....++..+....++++.|.+.|+++++.+++++
T Consensus       379 GGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~pSHIi  458 (570)
T KOG1360|consen  379 GGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIPNPSHII  458 (570)
T ss_pred             cceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccCCCccee
Confidence            99999999999999999999999999999999999999999887777778888899999999999999999999999999


Q ss_pred             EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCccCCcch-hhH
Q psy16848        415 PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPLSGLTC-AQV  493 (514)
Q Consensus       415 ~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~~~~~~~~-~~~  493 (514)
                      ++.+++...+.++++.|+.++|||+....+|+.+.+...+|+.++..+|++-++.+++.+.+++.+++++....+. ..|
T Consensus       459 Pv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~l~~~~~~s~~~c  538 (570)
T KOG1360|consen  459 PVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVGLPRVRDWSSAGC  538 (570)
T ss_pred             eeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcCCcccCCcccccc
Confidence            9999988888899999999999999999999999999999999999999999999999999999999987755555 578


Q ss_pred             hHHH
Q psy16848        494 NILL  497 (514)
Q Consensus       494 ~~~~  497 (514)
                      ++++
T Consensus       539 ~fc~  542 (570)
T KOG1360|consen  539 NFCV  542 (570)
T ss_pred             cccc
Confidence            8874

>PLN02955 8-amino-7-oxononanoate synthase

Probab=100.00  E-value=5.9e-43  Score=354.40  Aligned_cols=345  Identities=29%  Similarity=0.434  Sum_probs=304.1

Q ss_pred             CceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchh
Q psy16848         17 NRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLF   93 (514)
Q Consensus        17 g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~   93 (514)
                      ++.++||+|++||+   ||++++++.+++++||.+.++++...|+...++++|+++++++|.+.+++++||..||+.++.
T Consensus       101 ~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~  180 (476)
T PLN02955        101 FKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMV  180 (476)
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHH
Confidence            46899999999997   999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccc------------cCCCceEEecCccchhhhhhhhcC----CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848         94 TLGK------------MIPGLHYISDAGNHASMIQGIRNS----SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  157 (514)
Q Consensus        94 ~l~~------------~~~gd~v~~~~~~h~~~~~~~~~~----~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~  157 (514)
                      ++..            .+++|.|++|...|.|++.++++.    +++++.|+|+|+++|+++|++... +          
T Consensus       181 aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~-~----------  249 (476)
T PLN02955        181 AIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCKM-K----------  249 (476)
T ss_pred             HHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCCCHHHHHHHHHhCCC-C----------
Confidence            8731            247889999999999999999987    578889999999999998876432 1          


Q ss_pred             cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848        158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK  237 (514)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~  237 (514)
                                                                                                      
T Consensus       250 --------------------------------------------------------------------------------  249 (476)
T PLN02955        250 --------------------------------------------------------------------------------  249 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCc
Q psy16848        238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL  317 (514)
Q Consensus       238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~  317 (514)
                                            .++|+++.+.++.|.+.|+++|.++|++||++||+||+|++|.+|+.|.+..+.+++.
T Consensus       250 ----------------------~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~  307 (476)
T PLN02955        250 ----------------------RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE  307 (476)
T ss_pred             ----------------------ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCC
Confidence                                  2456666667777888889999999999999999999999999999998888877766


Q ss_pred             cCceEEEcCCcccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        318 HNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      .+.|++++||+|++|..||++++++++++.++.....+.|++..++..++++.++++.+..+  +..+++++++.+++++
T Consensus       308 ~di~ii~~TLsKA~G~~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~  385 (476)
T PLN02955        308 ADVDLCVGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKA  385 (476)
T ss_pred             CCCcEEEEeCccchhccCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHH
Confidence            78899999999999998999999999999999888888899888889999999999877543  2477888888888887


Q ss_pred             HHHhCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        398 ELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       398 ~L~~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .   .|+++   .++++.+.+++.....++.++|+ ++||++.+..+|..|.+...+|++++..+|++|+++++++|.++
T Consensus       386 ~---~G~~~---~sPI~pI~ig~~~~a~~~~~~L~-~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~  458 (476)
T PLN02955        386 L---SGVDI---SSPIISLVVGNQEKALKASRYLL-KSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSC  458 (476)
T ss_pred             h---cCCCC---CCCEEEEEeCCHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHH
Confidence            4   36653   47899999988777888999996 99999999999999999999999999999999999999999998


Q ss_pred             HHHcCC
Q psy16848        478 WKSLDL  483 (514)
Q Consensus       478 l~~~~~  483 (514)
                      .+....
T Consensus       459 ~~~~~~  464 (476)
T PLN02955        459 LDFDNT  464 (476)
T ss_pred             Hhhhcc
Confidence            776554

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=100.00  E-value=5e-41  Score=345.75  Aligned_cols=353  Identities=54%  Similarity=0.900  Sum_probs=296.4

Q ss_pred             CceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchh
Q psy16848         17 NRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLF   93 (514)
Q Consensus        17 g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~   93 (514)
                      |+.+++|+|++|++   ||++++++.+++++++.+.++++..+|+.+.+.++++++++++|.+++++++||++||..++.
T Consensus        44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~  123 (402)
T TIGR01821        44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLA  123 (402)
T ss_pred             CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHH
Confidence            47899999999997   899999999999999988887888888888999999999999999999999999999999998


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      .+....+++.|+.+..+|.++..+++..+.++..++++|.+++++.+...                              
T Consensus       124 ~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~------------------------------  173 (402)
T TIGR01821       124 TLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSV------------------------------  173 (402)
T ss_pred             HhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECCCCHHHHHHHHHhc------------------------------
Confidence            77543478999999999999999888888877777777777666655432                              


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (402)
T TIGR01821       174 --------------------------------------------------------------------------------  173 (402)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                        ..+++++|++++++||+|.+.|+++|.++|++||+++|+||+|++|.+|+.+.++....+...++|++++||+|++|.
T Consensus       174 --~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~  251 (402)
T TIGR01821       174 --DPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV  251 (402)
T ss_pred             --cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc
Confidence              112468999999999999999999999999999999999999998887776655544344334579999999999998


Q ss_pred             CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE
Q psy16848        334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI  413 (514)
Q Consensus       334 ~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  413 (514)
                      .|||+++++++++.+......+.++++.++..++++.++++.+.+.  ++.+++.+++.+++.+.|+++|+++..+.+++
T Consensus       252 ~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i  329 (402)
T TIGR01821       252 VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGIPVIPNPSHI  329 (402)
T ss_pred             CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCE
Confidence            8899999999999988766666667788899999999999987543  45667778999999999999988877777888


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +.+.++......++.+.|++++||.+.+..+|..+.+..++|++++..+|++|+++++++|++++++++.
T Consensus       330 ~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~~  399 (402)
T TIGR01821       330 VPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLGL  399 (402)
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            8887765334678888886467999998887776667789999999999999999999999999987654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=2e-40  Score=341.49  Aligned_cols=353  Identities=51%  Similarity=0.826  Sum_probs=295.8

Q ss_pred             CceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchh
Q psy16848         17 NRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLF   93 (514)
Q Consensus        17 g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~   93 (514)
                      ++.+++|++++|++   ||++++++.+++++++.+.++++..++..+.+.++++++++++|.+++++++||++||+.++.
T Consensus        44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~  123 (406)
T PRK13393         44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALS  123 (406)
T ss_pred             CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHH
Confidence            46899999999997   899999999999999988777777777778899999999999999999999999999999998


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      .+....+||.|+++..+|.+++.+++..+.++..++++|++.+++.+...                              
T Consensus       124 ~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~------------------------------  173 (406)
T PRK13393        124 TLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADLERKLSDL------------------------------  173 (406)
T ss_pred             HhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCCCCHHHHHHHHHhc------------------------------
Confidence            77654478999999999999999998888887777777777776655432                              


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (406)
T PRK13393        174 --------------------------------------------------------------------------------  173 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                        ..+++++|++++++|++|.+.|+++|.++|+++|+++|+||+|+.|.+|+.|.++....+...++|++++||+|++|.
T Consensus       174 --~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~  251 (406)
T PRK13393        174 --DPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV  251 (406)
T ss_pred             --cCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc
Confidence              112467899999999999999999999999999999999999998888877766554444444578999999999998


Q ss_pred             CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE
Q psy16848        334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI  413 (514)
Q Consensus       334 ~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  413 (514)
                      .|||+++++++++.+......+.++.+.++..++++.++++.+....  ..+++++++.+++.+.|++.++++..+.+++
T Consensus       252 ~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i  329 (406)
T PRK13393        252 MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKAGIPHLPNPSHI  329 (406)
T ss_pred             cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHcCCCcCCCCCCe
Confidence            88999999999998887766665666788888999999998774432  3356778899999999998888777777888


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +.+.+++.....++.+.|++++||.+.+..++..+.+...+|++++..+|++|+++++++|+++++++..
T Consensus       330 ~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~~~  399 (406)
T PRK13393        330 VPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARLGL  399 (406)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhcCc
Confidence            8887655344678888897346999998887776767789999999999999999999999999887643

>PRK09064 5-aminolevulinate synthase; Validated

Probab=100.00  E-value=4.2e-40  Score=339.53  Aligned_cols=353  Identities=53%  Similarity=0.855  Sum_probs=294.7

Q ss_pred             CceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchh
Q psy16848         17 NRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLF   93 (514)
Q Consensus        17 g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~   93 (514)
                      |+.++||++++|++   ||++.+++.+++++++.+.++++..+|..+.+.++++++++++|.+.+++++||++||..++.
T Consensus        45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~  124 (407)
T PRK09064         45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLS  124 (407)
T ss_pred             CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence            47899999999997   899999999999999887777777777888999999999999999899999999999999888


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      .+....+++.|+.+...|.++..+++..+.++..++++|++++++.+...                              
T Consensus       125 ~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~~d~~~le~~l~~~------------------------------  174 (407)
T PRK09064        125 TLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLEELLAAA------------------------------  174 (407)
T ss_pred             HHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECCCCHHHHHHHHHhc------------------------------
Confidence            77544478999999999999998888888887777777777776655421                              


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (407)
T PRK09064        175 --------------------------------------------------------------------------------  174 (407)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                        ..+++++|++++++|++|.+.|+++|.++|++||+++|+||+|++|.+|+.|.++....+...++|++++||||++|.
T Consensus       175 --~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~  252 (407)
T PRK09064        175 --DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGV  252 (407)
T ss_pred             --cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhc
Confidence              113468999999999999999999999999999999999999998877776655544444334679999999999998


Q ss_pred             CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE
Q psy16848        334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI  413 (514)
Q Consensus       334 ~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  413 (514)
                      .|||+++++++++.+......+.++++.++..++++.++++.+...  ...+++++++++++.+.|++.|+++..+.+++
T Consensus       253 ~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i  330 (407)
T PRK09064        253 MGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAAGIPVMPNESHI  330 (407)
T ss_pred             cCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCE
Confidence            8899999999999887766666556677888888899999887543  34578889999999999999988877777788


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +.+.+++.....++.+.|++++||.+.+..++..+.+..++|++++..+|++|+++++++|++++++++.
T Consensus       331 v~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~~  400 (407)
T PRK09064        331 VPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLGL  400 (407)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            8887765445678888886456999998777665656678999999999999999999999999988754

>KOG1359|consensus

Probab=100.00  E-value=8.9e-41  Score=304.51  Aligned_cols=344  Identities=34%  Similarity=0.546  Sum_probs=296.5

Q ss_pred             ceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhh
Q psy16848         18 RVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        18 ~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~   94 (514)
                      ..+++|++++|++   ||++.++-.++++.||.+..+.++.-|+...+..+|.++|++.+.+++++++|+..||..++-+
T Consensus        67 k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~fea  146 (417)
T KOG1359|consen   67 KKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEA  146 (417)
T ss_pred             cceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHHHH
Confidence            3589999999996   9999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      +..  |-|.|+.++..|.|++++++++.    .|.|.|...+++.+.+...-+-++|.+||+|+||||++|+.++++|++
T Consensus       147 il~--pedAvfSDeLNhASIIdGirLck----ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~  220 (417)
T KOG1359|consen  147 ILT--PEDAVFSDELNHASIIDGIRLCK----RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAK  220 (417)
T ss_pred             hcC--hhhhhhccccccchhhhhhHHHh----hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHH
Confidence            865  99999999999999999999997    788899999999998888778899999999999988886555555555


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                      +||+.+++                                                                        
T Consensus       221 kYgaLlfi------------------------------------------------------------------------  228 (417)
T KOG1359|consen  221 KYGALLFI------------------------------------------------------------------------  228 (417)
T ss_pred             hcCcEEEE------------------------------------------------------------------------
Confidence            55555444                                                                        


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-C
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-N  333 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~  333 (514)
                                                              ||+|+.|++|..|++..+.++...++|++.++++|++| .
T Consensus       229 ----------------------------------------DecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga  268 (417)
T KOG1359|consen  229 ----------------------------------------DECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGA  268 (417)
T ss_pred             ----------------------------------------eecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCC
Confidence                                                    55554444444444444555545589999999999997 4


Q ss_pred             CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE
Q psy16848        334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI  413 (514)
Q Consensus       334 ~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  413 (514)
                      .|||..+++++++.++...+++.|+.+.||.....+.++++.+..  -.+...+.+.+.+++++..+..|+.+.....++
T Consensus       269 ~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~--s~~~i~~~~a~~qrfr~~me~aGftIsg~~hPI  346 (417)
T KOG1359|consen  269 SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMV--SSKEIQSRQANTQRFREFMEAAGFTISGASHPI  346 (417)
T ss_pred             CCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCceecCCCCCc
Confidence            679999999999999999999999999998888888888886642  234677788889999999888899887777788


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .++.+++...+...++.|+ ++||+|...++|..|++...+|+.++..+|+||||++++++.++.+..+
T Consensus       347 ~pv~lGda~lA~~~ad~lL-k~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~  414 (417)
T KOG1359|consen  347 CPVMLGDARLASKMADELL-KRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN  414 (417)
T ss_pred             cceecccHHHHHHHHHHHH-hcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence            8888998888889999998 9999999999999999999999999999999999999999999877653

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=6.4e-40  Score=338.28  Aligned_cols=353  Identities=51%  Similarity=0.853  Sum_probs=291.0

Q ss_pred             CceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchh
Q psy16848         17 NRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLF   93 (514)
Q Consensus        17 g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~   93 (514)
                      |+.+++|++++|++   ||++++++.+++++++.+.++++..++..+...++++++++++|.+++++++||++|+..++.
T Consensus        45 ~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~  124 (410)
T PRK13392         45 PRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALS  124 (410)
T ss_pred             CceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHH
Confidence            46789999999996   899999999999999988777877888877889999999999999999999999999988888


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      .+....+||.|+++...|.++..+++..|+++..++++|.+.+++.                                  
T Consensus       125 ~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~----------------------------------  170 (410)
T PRK13392        125 TLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQ----------------------------------  170 (410)
T ss_pred             HHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCCCHHHHHHH----------------------------------
Confidence            7754448999999999999998888777777666655555444443                                  


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                                    ++
T Consensus       171 ------------------------------------------------------------------------------l~  172 (410)
T PRK13392        171 ------------------------------------------------------------------------------LA  172 (410)
T ss_pred             ------------------------------------------------------------------------------HH
Confidence                                                                                          33


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                      +...+++++|++++++||+|.+.|+++|.++|++||+++|+||+|+.|.+|..+.++....+...+.|++++||||++|.
T Consensus       173 ~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~  252 (410)
T PRK13392        173 SVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC  252 (410)
T ss_pred             hccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc
Confidence            33334688999999999999999999999999999999999999998877766555443333333578999999999998


Q ss_pred             CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE
Q psy16848        334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI  413 (514)
Q Consensus       334 ~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  413 (514)
                      .|||+++++++++.++.....+.++.+.++..++++.++|+.....  ...+++++++++++.+.|++.|+++.++.+++
T Consensus       253 ~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  330 (410)
T PRK13392        253 LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNANGIPVMPSPSHI  330 (410)
T ss_pred             ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCE
Confidence            8899999999999888777666566677888889999999876432  34567788999999999999998877777888


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +.+.+++.....++++.|++++||.+.+..++..+.+..++|++++..+|++|+++++++|++++++++.
T Consensus       331 ~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~~~  400 (410)
T PRK13392        331 VPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRLEL  400 (410)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            7777765444678889886568999998877666666789999999999999999999999999988765

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=3.3e-39  Score=336.34  Aligned_cols=356  Identities=26%  Similarity=0.382  Sum_probs=300.3

Q ss_pred             cCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccc
Q psy16848         15 KSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDST   91 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~   91 (514)
                      .+|+.++||.+++|++   ||++++++.+++++||.++++++.++|+.+.+.+++++++++++.++++++++|..++..+
T Consensus       106 ~~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sa  185 (481)
T PLN02822        106 INGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSV  185 (481)
T ss_pred             ECCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHH
Confidence            4788999999999885   8999999999999999988888889999999999999999999998899999998889889


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++.+  +||.|++++..|.++..+++..+++++.++++|.++++..+.+.....                        
T Consensus       186 i~a~~~--~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~------------------------  239 (481)
T PLN02822        186 IPAFCK--KGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAEN------------------------  239 (481)
T ss_pred             HHHhCC--CCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhh------------------------
Confidence            988876  999999999999999999999999999999999888887765432110                        


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (481)
T PLN02822        240 --------------------------------------------------------------------------------  239 (481)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCCCc-eEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCc-cCceEEEcCCcc
Q psy16848        252 LENMDVKIP-KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLGK  329 (514)
Q Consensus       252 l~~~~~~~~-~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~-~~~di~~~S~sK  329 (514)
                         ..++++ ++|++++++|++|.+.|+++|+++|++||+++|+||+|++|.+|+.|++..+..++. .++|++++||+|
T Consensus       240 ---~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sK  316 (481)
T PLN02822        240 ---KRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGH  316 (481)
T ss_pred             ---cccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchh
Confidence               001223 799999999999999999999999999999999999999998888887777666642 478999999999


Q ss_pred             cccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc
Q psy16848        330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH  408 (514)
Q Consensus       330 ~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  408 (514)
                      ++|..|||+++++++++.++.....+.|+.+.|+..++++.++|+.+..  .++++++++++.+++.+.|++. |+++..
T Consensus       317 alg~~GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~  394 (481)
T PLN02822        317 ALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLED--NPSVLAKLKENIALLHKGLSDIPGLSIGS  394 (481)
T ss_pred             hhhhCCeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9998899999999999998877777777777788889999899987643  2568899999999999999987 877754


Q ss_pred             -CCCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        409 -TPSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPV--GEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       409 -~~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~--~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                       +.++++.+.+++.        ....++++.|++++||.+.++.++....  .+..+|++++..+|++|+++++++|+++
T Consensus       395 ~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~  474 (481)
T PLN02822        395 NTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRV  474 (481)
T ss_pred             CCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence             4566777877542        1136789998768899999876543322  2457999999999999999999999998


Q ss_pred             HHHc
Q psy16848        478 WKSL  481 (514)
Q Consensus       478 l~~~  481 (514)
                      +.++
T Consensus       475 ~~~~  478 (481)
T PLN02822        475 AASV  478 (481)
T ss_pred             HHHH
Confidence            8764

>PRK07179 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-38  Score=327.54  Aligned_cols=351  Identities=25%  Similarity=0.353  Sum_probs=281.4

Q ss_pred             hcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         14 HKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        14 ~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      +.+|..++||+|++||+   ||++++++.+++++++.+.+.+....+..+...++++++++++|.+++++++||++||..
T Consensus        50 ~~~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~  129 (407)
T PRK07179         50 KTPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVG  129 (407)
T ss_pred             cCCCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            34778899999999996   899999999999998766544444444456889999999999999999999999999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++...|.++..+++..+.+++.+.++|+++|++.+.+.                           
T Consensus       130 ~l~~l~~--~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~---------------------------  180 (407)
T PRK07179        130 LLQTIAD--PNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQIERH---------------------------  180 (407)
T ss_pred             HHHHhCC--CCCEEEEECCcCHHHHHHHHHCCCeEEEecCCCHHHHHHHHHhc---------------------------
Confidence            9999876  89999999999999998888888887777777777766655321                           


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (407)
T PRK07179        181 --------------------------------------------------------------------------------  180 (407)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                              ++++|++++++||+|.+.|+++|.++|+++|+++|+||+|++|..|..+.++....+....+|++++|+||+
T Consensus       181 --------~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~  252 (407)
T PRK07179        181 --------GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKA  252 (407)
T ss_pred             --------CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHh
Confidence                    256889999999999999999999999999999999999998877776655443344333569999999999


Q ss_pred             ccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Q psy16848        331 FGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP  410 (514)
Q Consensus       331 lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  410 (514)
                      +|+.+|++++++++++.+........++.+.++..++++.++++.+...  ++.+++++++++++.+.|+++|+.+. +.
T Consensus       253 ~g~~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~--~~~~~~l~~~~~~l~~~L~~~g~~v~-~~  329 (407)
T PRK07179        253 FAGRAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESA--DDRRARLHANARFLREGLSELGYNIR-SE  329 (407)
T ss_pred             hhccCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCC-CC
Confidence            9886799999999888776554444445555666667777778766332  45788999999999999999887765 56


Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCcc
Q psy16848        411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPL  485 (514)
Q Consensus       411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~~~  485 (514)
                      ++++.+.++.......+.+.|. ++||.+.....+..+.+.+.+|++++..+|++|+++++++|++++++.++.+
T Consensus       330 ~~i~~l~~~~~~~~~~~~~~L~-~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~~~~  403 (407)
T PRK07179        330 SQIIALETGSERNTEVLRDALE-ERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEVDLWF  403 (407)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHH-HCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCc
Confidence            6788888765334567777884 8999865444433344568999999999999999999999999999877643

>PLN02483 serine palmitoyltransferase

Probab=100.00  E-value=1.9e-38  Score=331.20  Aligned_cols=364  Identities=28%  Similarity=0.436  Sum_probs=298.1

Q ss_pred             CCceeeecccCCCCC----ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccc
Q psy16848         16 SNRVTCRLSSVQYKV----PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~   91 (514)
                      .++.++||+|++||+    ++...+++.+++++++.+.++++..+|+.+.++++|+.+++++|.++++++++|+.++..+
T Consensus        98 ~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~  177 (489)
T PLN02483         98 KTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTI  177 (489)
T ss_pred             CCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence            457899999999996    4678899999999999988889988999999999999999999999999999999999988


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhccc-CCCcEEEeeccccccCCccchhHHh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV-KIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      +.++..  +||.|+++++.|.++..+++..|++++.++++|++++++.+++... .+|+.                    
T Consensus       178 i~al~~--~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t--------------------  235 (489)
T PLN02483        178 IPALIG--KGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRT--------------------  235 (489)
T ss_pred             HHHhCC--CCCEEEEcchhhHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhhhhcccccc--------------------
Confidence            888866  9999999999999999999999999999999999999887764211 01100                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (489)
T PLN02483        236 --------------------------------------------------------------------------------  235 (489)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCCce-EEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCc-cCceEEEcCCc
Q psy16848        251 VLENMDVKIPK-LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLG  328 (514)
Q Consensus       251 ~l~~~~~~~~~-~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~-~~~di~~~S~s  328 (514)
                           ..+..+ +|+++++.|++|.+.++++|.++|++||+++|+||+|++|..|+.|.+..+..+.. .+.|++++|||
T Consensus       236 -----~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfS  310 (489)
T PLN02483        236 -----HRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFT  310 (489)
T ss_pred             -----ccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecc
Confidence                 001123 67778888999999999999999999999999999999888887776665554432 46799999999


Q ss_pred             ccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhc----hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        329 KAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ----EGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       329 K~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      |++|+.|||+++++++++.+........++.++++..++++.++++.+..+    ...+.+++++++++++.+.|+++|+
T Consensus       311 Ks~g~~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~  390 (489)
T PLN02483        311 KSFGSCGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGF  390 (489)
T ss_pred             hhcccCceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999988999999999999998765544445556777777777888765422    3456678899999999999999988


Q ss_pred             ccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        405 PVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       405 ~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      .+..+ .++++++.+....+..++++.|+ ++||.+.+..++..+...+.+|++++..+|+||+++++++|+++++.+.+
T Consensus       391 ~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll-~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~~  469 (489)
T PLN02483        391 EVLGDNDSPVMPIMLYNPAKIPAFSRECL-KQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGI  469 (489)
T ss_pred             cccCCCCCCEEEEEECCHHHHHHHHHHHH-HCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            76544 34676766655445678999997 88999998666555666689999999999999999999999999998876


Q ss_pred             ccCC
Q psy16848        484 PLSG  487 (514)
Q Consensus       484 ~~~~  487 (514)
                      .+..
T Consensus       470 ~~~~  473 (489)
T PLN02483        470 KYFP  473 (489)
T ss_pred             eecc
Confidence            5543

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=100.00  E-value=5.7e-38  Score=320.12  Aligned_cols=352  Identities=26%  Similarity=0.386  Sum_probs=286.2

Q ss_pred             eecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccc
Q psy16848         21 CRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGK   97 (514)
Q Consensus        21 ~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~   97 (514)
                      +||+|++||+   ||++++++.+++++||.++++++..+|....+.++|+++++++|.+++++++||+.|+..++.++.+
T Consensus         1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~   80 (392)
T PLN03227          1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAK   80 (392)
T ss_pred             CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCC
Confidence            5899999997   8999999999999999999999999998889999999999999999999999999999999988866


Q ss_pred             cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848         98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  177 (514)
Q Consensus        98 ~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
                        +||+|+++++.|.+++.+++..+.++++++++|.+++++.+.......                              
T Consensus        81 --~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~~~l~~~~~~i~~~~------------------------------  128 (392)
T PLN03227         81 --RGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRAQD------------------------------  128 (392)
T ss_pred             --CCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCHHHHHHHHHHhhhhc------------------------------
Confidence              999999999999999999999899998899998888887665432110                              


Q ss_pred             ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848        178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  257 (514)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~  257 (514)
                                                                                              ..++...+
T Consensus       129 ------------------------------------------------------------------------~a~~~~~~  136 (392)
T PLN03227        129 ------------------------------------------------------------------------VALKRKPT  136 (392)
T ss_pred             ------------------------------------------------------------------------cccccccC
Confidence                                                                                    00001112


Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCC--ccCceEEEcCCcccccCCC
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ--LHNMDIISGTLGKAFGNIG  335 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~--~~~~di~~~S~sK~lg~~G  335 (514)
                      +++++|++++++|++|.+.|+++|.++|++||+++|+||+|++|..|+.|.+..+.+++  ..++|+++.|++|++|+.|
T Consensus       137 ~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g  216 (392)
T PLN03227        137 DQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG  216 (392)
T ss_pred             CCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC
Confidence            45789999999999999999999999999999999999999988888877777666654  2356999999999999888


Q ss_pred             eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc--------
Q psy16848        336 GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE--------  407 (514)
Q Consensus       336 G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--------  407 (514)
                      |++++++++++.++.......|+.+.++..++++.+++....+  .++++++++++.+++.+.|++.+++.+        
T Consensus       217 g~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~  294 (392)
T PLN03227        217 GMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLV  294 (392)
T ss_pred             cEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccc
Confidence            9999999988887765555556666678788888777765432  245888999999999999987544321        


Q ss_pred             ---cCCCcEEEEEeCCCcc---------HHHHHHHHHHhCCeEEeccc------CCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        408 ---HTPSHIIPIKIGNPAL---------NTKICDMLLKEKGHYVQPIN------YPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       408 ---~~~~~~~~i~l~~~~~---------~~~~~~~Ll~~~GI~v~~~~------~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                         .+.++++.+.+.+...         ..++++.++ ++|+.+.+..      .+..|  +..+|++++..+|+||+++
T Consensus       295 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gi~~~~~~~~~~~~~~~~P--~~~iR~~~~~~~t~eei~~  371 (392)
T PLN03227        295 ITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSL-SEGVAVVSTGGHVKKFLQLVP--PPCLRVVANASHTREDIDK  371 (392)
T ss_pred             cCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHH-HCCCEEEecccccCCcCCCCC--CceEEEEecCCCCHHHHHH
Confidence               2346688888865321         247888886 8999986421      12333  4689999999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy16848        470 FVTDLLAVWKSL  481 (514)
Q Consensus       470 ~~~~l~~~l~~~  481 (514)
                      ++++|+++++++
T Consensus       372 ~~~~l~~~~~~~  383 (392)
T PLN03227        372 LLTVLGEAVEAI  383 (392)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=100.00  E-value=1.8e-37  Score=318.77  Aligned_cols=352  Identities=32%  Similarity=0.528  Sum_probs=284.6

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|+.++||++++|++   +|++++++.+++++++.++++++...|..+.+.++++.+++++|.+++++++||++|+..++
T Consensus        36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~  115 (393)
T TIGR01822        36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLF  115 (393)
T ss_pred             CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHH
Confidence            788899999999986   78999999999999887777778777888889999999999999999999999999988888


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++.+  +||+|++++++|.++..+++..+.+.+.+.+.|++++++.+.+...                           
T Consensus       116 ~~l~~--~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~---------------------------  166 (393)
T TIGR01822       116 ETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARA---------------------------  166 (393)
T ss_pred             HHhCC--CCCEEEEeccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhh---------------------------
Confidence            88865  9999999999999999988888887777777777777666643211                           


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (393)
T TIGR01822       167 --------------------------------------------------------------------------------  166 (393)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                         ...++++|++++++|++|.+.|+++|.++|++||+++|+||+|++|..+..+.+..+..+...++|++++|+||+++
T Consensus       167 ---~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~  243 (393)
T TIGR01822       167 ---AGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALG  243 (393)
T ss_pred             ---cCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhh
Confidence               01247889999999999999999999999999999999999998887766554433333333468999999999996


Q ss_pred             C-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848        333 N-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS  411 (514)
Q Consensus       333 ~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  411 (514)
                      + .|||+++++++++.+......+.++.+.++..++++.++++.+.  ..++.+++++++.+++.+.|++.|+.+..+.+
T Consensus       244 g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  321 (393)
T TIGR01822       244 GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLE--ASNELRDRLWANTRYFRERMEAAGFDIKPADH  321 (393)
T ss_pred             CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            4 45999999999998876544454555556666777788887653  34568889999999999999988877665566


Q ss_pred             cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++.+.+++.....++++.|+ ++||.+....++..+.+...+|++++..+|++|+++++++|++++++++
T Consensus       322 ~~~~i~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~~  391 (393)
T TIGR01822       322 PIIPVMLYDAVLAQRFARRLL-EEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELG  391 (393)
T ss_pred             CEEEEEeCCHHHHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence            777777665455778999996 7899998544443344556799999999999999999999999987654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=100.00  E-value=4.1e-35  Score=300.46  Aligned_cols=353  Identities=35%  Similarity=0.554  Sum_probs=275.7

Q ss_pred             hhcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         13 VHKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        13 ~~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      +..+|+.++||.++++++   +|.+.+++.+++.+++...+.+....|..++.+++++++++++|.+..++++||+++++
T Consensus        28 ~~~~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~  107 (385)
T TIGR01825        28 VRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQ  107 (385)
T ss_pred             EEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHH
Confidence            336888999998877664   78999999999988766555566677888999999999999999888899999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|++++++|.+...+++..+.++..+++.|.+++++.                              
T Consensus       108 ~a~~~~~~--~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~------------------------------  155 (385)
T TIGR01825       108 GVLSALLR--KGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRV------------------------------  155 (385)
T ss_pred             HHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEeCCCCHHHHHHH------------------------------
Confidence            88888765  9999999999999998777777776665555555544443                              


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (385)
T TIGR01825       156 --------------------------------------------------------------------------------  155 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                        +.+...++++++++++++|++|.+.++++|.++|++||+++|+||+|+.+.++..+.+.....+...+.|++++||||
T Consensus       156 --l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  233 (385)
T TIGR01825       156 --LRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSK  233 (385)
T ss_pred             --HHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccH
Confidence              333333457899999999999999999999999999999999999998776554332222222333468899999999


Q ss_pred             cccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       330 ~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      +++..|||+++++++++.+......+.++...++..++++.++++.+.+.  .+..++++++++++.+.|++.|+++..+
T Consensus       234 ~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~  311 (385)
T TIGR01825       234 AIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRS--PELMERLWDNTRFFKAGLGKLGYDTGGS  311 (385)
T ss_pred             HhhcCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99887899999999998887654434334445677778888888765332  2467778889999999999988887767


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .++++.+.++...+..++++.|+ ++||.+.+..++..+.+...+|++++..++++++++++++|++++++++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~~  383 (385)
T TIGR01825       312 ETPITPVVIGDEKAAQEFSRRLF-DEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKELG  383 (385)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHH-HCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            67777776654334678999997 7799986555544444567999999989999999999999999987653

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=100.00  E-value=7.4e-35  Score=295.80  Aligned_cols=346  Identities=36%  Similarity=0.536  Sum_probs=270.7

Q ss_pred             hhcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         13 VHKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        13 ~~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      +..+|+.++||.++++++   +|++++++.+++++++...+.+....|..+...++++.++++++.+..+++++|++++.
T Consensus        11 ~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~   90 (360)
T TIGR00858        11 VVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANV   90 (360)
T ss_pred             EEECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHH
Confidence            346899999999888876   48999999999998776555555566777889999999999999888999999999988


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||+|++++++|.+...+++..|.+++.++..|.+.+++                               
T Consensus        91 ~~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~-------------------------------  137 (360)
T TIGR00858        91 GVISALVG--KGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLER-------------------------------  137 (360)
T ss_pred             HHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHH-------------------------------
Confidence            77777755  999999999999999887777777666555444444444                               


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (360)
T TIGR00858       138 --------------------------------------------------------------------------------  137 (360)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCC-ccCceEEEcCCc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ-LHNMDIISGTLG  328 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~-~~~~di~~~S~s  328 (514)
                       .+++...++++++++++++|++|...++++|.++|+++|+++|+||+|+.+.++..+.+.....+. ..+.|++++|+|
T Consensus       138 -~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s  216 (360)
T TIGR00858       138 -LLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLS  216 (360)
T ss_pred             -HHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEech
Confidence             443322234678999999999999999999999999999999999999977655433333222222 236789999999


Q ss_pred             ccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848        329 KAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH  408 (514)
Q Consensus       329 K~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  408 (514)
                      |++++.|||+++++++++.+......+.++.+.++..++++.++++....  .++.+++++++++++.+.|+++++.+..
T Consensus       217 K~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~  294 (360)
T TIGR00858       217 KALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQE--EPWRREKLLALIARLRAGLEALGFTLMP  294 (360)
T ss_pred             hhhhccCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            99998889999999998888655444433445566767777888876532  2567899999999999999998877666


Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      +.++++++.++...+..++.+.|+ ++||.+.++..+..+.+.+++|++++..++++|+++++++|+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       295 SCTPIVPVIIGDNASALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            677788888875445678999995 899999886654434455789999998899999999998874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=100.00  E-value=1.4e-34  Score=297.89  Aligned_cols=352  Identities=34%  Similarity=0.548  Sum_probs=274.3

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|+.++|+.+++|++   +|++.+++.+++++++..++.++...|..++.+++++++++++|.+..+++++|++++..++
T Consensus        40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~  119 (397)
T PRK06939         40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLF  119 (397)
T ss_pred             CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHH
Confidence            778899998887764   68899999999988766555556667888999999999999999888899999999999888


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++.+  |||.|++++++|.+...+++..+++++.++..|++++++.+.+...                           
T Consensus       120 ~~l~~--~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~---------------------------  170 (397)
T PRK06939        120 ETLLG--KEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKE---------------------------  170 (397)
T ss_pred             HHhCC--CCCEEEEEhhhhHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhc---------------------------
Confidence            88865  9999999999999999888888888777666666666655533211                           


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (397)
T PRK06939        171 --------------------------------------------------------------------------------  170 (397)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-  331 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-  331 (514)
                         ...+++++++++++|++|...++++|.++|++||+++|+||+|+++..+..+.+..+..+...++|++++|+||++ 
T Consensus       171 ---~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~  247 (397)
T PRK06939        171 ---AGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG  247 (397)
T ss_pred             ---cCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC
Confidence               0124678888889999999999999999999999999999999866654433222222333336789999999999 


Q ss_pred             cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848        332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS  411 (514)
Q Consensus       332 g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  411 (514)
                      |+.|||+++++++++.+......+.++.+.++..++++.++++.+..  ..+++++++++++++.+.|++.+++...+.+
T Consensus       248 g~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  325 (397)
T PRK06939        248 GASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEE--SDELRDRLWENARYFREGMTAAGFTLGPGEH  325 (397)
T ss_pred             ccCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence            44569999999999988765444433444556666777777876632  3468889999999999999998877665666


Q ss_pred             cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++.+.++...+..++++.|+ ++||.+.+..++..+.+..++|++++..++++++++++++|+++++++.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~L~-~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~~  395 (397)
T PRK06939        326 PIIPVMLGDAKLAQEFADRLL-EEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELG  395 (397)
T ss_pred             CEEEEEECCHHHHHHHHHHHH-HCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence            777666655445678999996 7799998655533333457899999988999999999999999988753

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=100.00  E-value=1.1e-34  Score=293.49  Aligned_cols=343  Identities=48%  Similarity=0.750  Sum_probs=268.7

Q ss_pred             eeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc
Q psy16848         19 VTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        19 ~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l   95 (514)
                      .+++|+|++|||   ||++.+++.+++++++.+.+++++..|..+..+++++.++++++.+..++++||++++..++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~   81 (349)
T cd06454           2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTL   81 (349)
T ss_pred             CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHh
Confidence            478999999997   78999999999999877666666666778999999999999999988999999999998888877


Q ss_pred             cccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848         96 GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus        96 ~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                      ..  +||.|++++++|.+...+++..|++++.++..|.+++++.+.+..                               
T Consensus        82 ~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~-------------------------------  128 (349)
T cd06454          82 AG--KGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREAR-------------------------------  128 (349)
T ss_pred             cC--CCCEEEEehhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHHhh-------------------------------
Confidence            65  999999999999999888877777777666555555555543321                               


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  255 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~  255 (514)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (349)
T cd06454         129 --------------------------------------------------------------------------------  128 (349)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC
Q psy16848        256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG  335 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G  335 (514)
                      ..++++++++++++||+|...|+++|.++|+++|+++|+|++|++|..+..+...........++|++++|+||++++.|
T Consensus       129 ~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g  208 (349)
T cd06454         129 RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG  208 (349)
T ss_pred             ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC
Confidence            01236789999999999999999999999999999999999998776543332221111113468999999999999888


Q ss_pred             eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-EE
Q psy16848        336 GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-II  414 (514)
Q Consensus       336 G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~  414 (514)
                      |+++.++++.+.+......+.++.+.++..++++.++++....  .++.+++++++++++.+.|.+.+++...+.++ ++
T Consensus       209 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~  286 (349)
T cd06454         209 GYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIP  286 (349)
T ss_pred             CEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEE
Confidence            9999999988887765544434446778888888888887643  45678899999999999999888776555444 34


Q ss_pred             EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        415 PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       415 ~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .+.+++..+..++.+.|+ ++||.+.++.++....+.+++|++++..++++++++++++|+++
T Consensus       287 ~~~~~~~~~~~~~~~~L~-~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         287 PLIGDDPAKAVAFSDALL-ERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             EEeCCChHHHHHHHHHHH-hCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            444443445678999996 78999987654332333579999999889999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=100.00  E-value=2.5e-34  Score=294.74  Aligned_cols=347  Identities=36%  Similarity=0.545  Sum_probs=270.4

Q ss_pred             hhcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         13 VHKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        13 ~~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      +..+|+.++|+.++++++   +|++++++.+++.+++.+.+.+....+..+..++++++++++++.+..+++++|++++.
T Consensus        34 ~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~  113 (385)
T PRK05958         34 LVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANL  113 (385)
T ss_pred             eEeCCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHH
Confidence            334789999999887654   58999999999998876555555666777889999999999999888899999999988


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++..+.+  +||.|++++++|.+...+++..|.+++.++..|.+.+++.+.                            
T Consensus       114 ~~l~~~~~--~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~----------------------------  163 (385)
T PRK05958        114 AVLTALAG--KGDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLA----------------------------  163 (385)
T ss_pred             HHHHHhCC--CCCEEEEeCccCHHHHHHHHhcCCceEEeCCCCHHHHHHHHH----------------------------
Confidence            77777755  999999999999999888777777766655555555544442                            


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (385)
T PRK05958        164 --------------------------------------------------------------------------------  163 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCc-cCceEEEcCCc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLG  328 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~-~~~di~~~S~s  328 (514)
                          .. .++++++++++++|++|...++++|.++|++||+++|+||+|+.|.++..+.+........ ...++++.|+|
T Consensus       164 ----~~-~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~s  238 (385)
T PRK05958        164 ----KW-RAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLG  238 (385)
T ss_pred             ----hc-cCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEech
Confidence                21 1125678888999999999999999999999999999999998776654333222211221 24568899999


Q ss_pred             ccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848        329 KAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH  408 (514)
Q Consensus       329 K~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  408 (514)
                      |++++.||++++++++.+.+......+.++.+.++..++++.++++.+...  .+.++++.++++++.+.|++.++++..
T Consensus       239 K~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~  316 (385)
T PRK05958        239 KALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRALGFQLMD  316 (385)
T ss_pred             hhcccCCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence            999987899999998888776544344444456777778888888876433  467889999999999999998887777


Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.++++++.+++..+..++.+.|. ++||.+.++..+..+.+.+++|++++..++++++++++++|+++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        317 SQSAIQPLIVGDNERALALAAALQ-EQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHH-HCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence            778888888875445678999995 88999987654333334579999999889999999999999875

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=100.00  E-value=8.6e-34  Score=288.41  Aligned_cols=342  Identities=22%  Similarity=0.331  Sum_probs=264.8

Q ss_pred             ceeeecccCCCCC---ChhHHHHHHHHHHHh-------CCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccc
Q psy16848         18 RVTCRLSSVQYKV---PKGGRKCLGEALEKF-------GTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVA   87 (514)
Q Consensus        18 ~~~~d~~~~~~~~---~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a   87 (514)
                      ..++||+|++||+   +|.+.+++.+++.++       +.+.++++...|..+.++++|+.+++++|.+.+++++||+.|
T Consensus         4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a   83 (370)
T PRK05937          4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMA   83 (370)
T ss_pred             CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHH
Confidence            4689999999997   799999999999998       466778888889999999999999999999999999999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++..+.+  +||.|+++..+|.+++.+++......+.|+++|+++|++.+......                     
T Consensus        84 ~~~~~~~~~~--~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~---------------------  140 (370)
T PRK05937         84 NLGLCAHLSS--VTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQR---------------------  140 (370)
T ss_pred             HHHHHHHhCC--CCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHhhhcc---------------------
Confidence            8766655544  89999999999999999988776666778888888887777542110                     


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (370)
T PRK05937        141 --------------------------------------------------------------------------------  140 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                               .++++++++++++|++|.+.|+++|.++|+++|+++++|++|+.|.++..+.++....+. .+.++++.||
T Consensus       141 ---------~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~-~~~~~~~~tl  210 (370)
T PRK05937        141 ---------SFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGY-ENFYAVLVTY  210 (370)
T ss_pred             ---------CCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCC-CCCcEEEEec
Confidence                     123567888999999999999999999999999999999999988877666444322221 1234566799


Q ss_pred             cccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy16848        328 GKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE  407 (514)
Q Consensus       328 sK~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  407 (514)
                      ||.+|+.|+.++..++..+.+......+.++.+.++..++++.++++.+.+.. +..+++++++.+++.+.|...+    
T Consensus       211 sK~~g~~G~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~----  285 (370)
T PRK05937        211 SKALGSMGAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAA----  285 (370)
T ss_pred             hhhhhcCceEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC----
Confidence            99999878556666666666554444555666778888888888898875443 4567778888888877765421    


Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCcc
Q psy16848        408 HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPL  485 (514)
Q Consensus       408 ~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~~~  485 (514)
                        .+....+.++.. ...++.+.| .++||.+....++    ..+++|++++..+|++|++++++.|+++++++++..
T Consensus       286 --~~~~~~i~~~~~-~~~~~~~~L-~~~gi~v~~~~~~----~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~~~  355 (370)
T PRK05937        286 --PGCVQPIFLPGI-SEQELYSKL-VETGIRVGVVCFP----TGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQKNV  355 (370)
T ss_pred             --CCCEEEEEeCCh-hHHHHHHHH-HHCCeeEEeeCCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence              122334555542 356777788 5899998754332    245899999999999999999999999999887543

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-34  Score=277.51  Aligned_cols=326  Identities=25%  Similarity=0.295  Sum_probs=252.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-CCcEEEEeccccccccchhhccccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~  109 (514)
                      ||.+++++.+|+++.-.   .+..++  .+...++.+++++..+ .++++|+||||+||+.|+....+..          
T Consensus        60 hP~iv~al~~Q~~kl~h---~sn~~~--~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~----------  124 (404)
T COG4992          60 HPALVEALKEQAEKLWH---VSNLFY--NEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYT----------  124 (404)
T ss_pred             CHHHHHHHHHHHHHhhh---cccccC--ChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHc----------
Confidence            89999999999998533   222332  4778999999999996 8999999999999999996554311          


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                                                      . ...++++|.|++.||                          ++..|
T Consensus       125 --------------------------------~-~~~k~~Iia~~nsFH--------------------------GRT~g  145 (404)
T COG4992         125 --------------------------------G-DPEKSKIIAFENSFH--------------------------GRTLG  145 (404)
T ss_pred             --------------------------------C-CCCCcEEEEEcCCcC--------------------------Cccce
Confidence                                            0 234677888888886                          11111


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                      ....++..                           -|...+...-..+..+|++|.+.+++.+.+    +|++|+++++|
T Consensus       146 alS~t~~~---------------------------ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~----~taAvivEPIQ  194 (404)
T COG4992         146 ALSATGQP---------------------------KYRKGFGPLLPGFRHVPFNDIEALEAAIDE----DTAAVIVEPIQ  194 (404)
T ss_pred             eeeccCCh---------------------------hhccCCCCCCCCceecCCCCHHHHHHHhcc----CeEEEEEeccc
Confidence            11111100                           122223222335788899999999999976    69999999999


Q ss_pred             CCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEec
Q psy16848        270 SMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGT  341 (514)
Q Consensus       270 nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~  341 (514)
                      ...|.+++    +++++++|++||+++|.||+|+ +|+.|+..  ..+++++  .|||+  ++.|++|+ |   |+++++
T Consensus       195 GEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f--A~e~~gV--~PDI~--tlaK~LgG-G~PigA~la~  267 (404)
T COG4992         195 GEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF--AYEHYGV--EPDIL--TLAKALGG-GFPIGAMLAT  267 (404)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH--HHHHhCC--CCCEE--EeeccccC-CccceeeEEc
Confidence            99999988    8999999999999999999999 77776543  2345555  89999  99999997 6   777777


Q ss_pred             HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc---ccCCCcEEEE
Q psy16848        342 KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV---EHTPSHIIPI  416 (514)
Q Consensus       342 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~i  416 (514)
                      +.+.+.+....++.  +++.||+.++++.++++.+.++.   +.++.+++.+++.+.|+++  .+++   +...|.|+.+
T Consensus       268 ~~~~~~~~~G~HgS--TfGGNpLacAv~~a~l~~l~~e~---ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGi  342 (404)
T COG4992         268 EEIASAFTPGDHGS--TFGGNPLACAVALAVLEVLLEEG---LLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGI  342 (404)
T ss_pred             hhhhhcCCCCcccC--CCCcCHHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEE
Confidence            76677777666665  55899999999999999987666   7888999999999999987  4332   3456778889


Q ss_pred             EeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        417 KIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       417 ~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++.......++++.+. ++|+.+.+       .+++.+|+.+++.+++|++++++++++++++..
T Consensus       343 el~~~~~a~~~~~~~~-~~gvL~~~-------a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~  399 (404)
T COG4992         343 ELKEPYRARDIVRALR-EEGVLVLP-------AGPNVIRFLPPLVITEEEIDEALDALERALAAA  399 (404)
T ss_pred             EecCcccHHHHHHHHH-HCCeEEec-------CCCCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence            9877556789999995 99999863       345699999999999999999999999998865

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-32  Score=276.38  Aligned_cols=345  Identities=21%  Similarity=0.226  Sum_probs=266.0

Q ss_pred             ceeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----Cc-EEEEecccccccc
Q psy16848         18 RVTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EA-GLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~-~i~~~sGt~a~~~   90 (514)
                      ...||++-.  ++-.++.+.+++.+++...+.   .+....|..++.+.+.+.+.+.+|.    +. .++++++++|+..
T Consensus        28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~---~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~  104 (393)
T COG0436          28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGT---HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL  104 (393)
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence            468888543  444577899999999987432   2225567888888888888888762    23 4555556678888


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  |||+|+++.|.|.+....++.+|++++.++..                                       
T Consensus       105 ~~~a~~~--pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~---------------------------------------  143 (393)
T COG0436         105 AFLALLN--PGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLD---------------------------------------  143 (393)
T ss_pred             HHHHhcC--CCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCC---------------------------------------
Confidence            8888876  99999999999988776666555554433210                                       


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLT  249 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~  249 (514)
                                                                                            .. +++....
T Consensus       144 ----------------------------------------------------------------------~~~~~f~~d~  153 (393)
T COG0436         144 ----------------------------------------------------------------------EEENGFKPDL  153 (393)
T ss_pred             ----------------------------------------------------------------------cCccCCcCCH
Confidence                                                                                  01 3566667


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+++..+++||++++++||||||.+++   +++|.++|++||+++|.||+|. +.+.+....++.+..+ ..+..+++.
T Consensus       154 ~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~-~~~~~i~i~  232 (393)
T COG0436         154 EDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAG-ARDRTITIN  232 (393)
T ss_pred             HHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCC-CcceEEEEe
Confidence            7777777788999999999999999999   8999999999999999999999 4443433334443333 136789999


Q ss_pred             CCcccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHH
Q psy16848        326 TLGKAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS-QEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ||||.++.+|   ||++++ +++++.+.+.....  +.+.+.+.+.++.++|+.... ...+..++.++++++.+.+.|.
T Consensus       233 s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~--~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~  310 (393)
T COG0436         233 SFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYL--TSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALN  310 (393)
T ss_pred             cccccccccccceeEeecChHHHHHHHHHHHHhc--ccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999989   999999 88888888666555  447889999999999986532 4567777899999999999999


Q ss_pred             hC-CCcccc-CCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        401 QI-GFPVEH-TPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       401 ~~-g~~~~~-~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +. |+.+.. +.|. +++..++...+..+|+.+|+++.||.+.||..+..+.+.+++|+++.  .+.++++++++++.+.
T Consensus       311 ~~~g~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~--~~~~~l~~a~~rl~~~  388 (393)
T COG0436         311 EIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLA--TSEETLEEALRRLARF  388 (393)
T ss_pred             hcCCeeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEe--cCHHHHHHHHHHHHHH
Confidence            88 588776 5555 45566665567899999999899999999998665557899999998  4569999999999998


Q ss_pred             HHHc
Q psy16848        478 WKSL  481 (514)
Q Consensus       478 l~~~  481 (514)
                      ++..
T Consensus       389 ~~~~  392 (393)
T COG0436         389 LAEY  392 (393)
T ss_pred             HHhc
Confidence            8754

>PRK07505 hypothetical protein; Provisional

Probab=100.00  E-value=4.2e-31  Score=271.80  Aligned_cols=344  Identities=26%  Similarity=0.340  Sum_probs=245.2

Q ss_pred             cCCceeeecccCCCCC---ChhHHHHHHHHHHHhC-CCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         15 KSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFG-TGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      .+|+.++||.+++|++   ||++++++.+++++++ ..++++... ...+..++++++++++++. +.++++||++|+..
T Consensus        43 ~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~-~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~  120 (402)
T PRK07505         43 ADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTR-VRSQILKDLEEALSELFGA-SVLTFTSCSAAHLG  120 (402)
T ss_pred             cCCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchh-hhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHH
Confidence            3788899999999997   8999999999999887 233333222 2357889999999999988 88989999999988


Q ss_pred             chhhccc---c-CCCceEEecCccchhhhh--hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         91 TLFTLGK---M-IPGLHYISDAGNHASMIQ--GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        91 ~l~~l~~---~-~~gd~v~~~~~~h~~~~~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++..+..   . ++++.|+.+...|.++..  .+...                                           
T Consensus       121 ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~-------------------------------------------  157 (402)
T PRK07505        121 ILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICAD-------------------------------------------  157 (402)
T ss_pred             HHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhc-------------------------------------------
Confidence            8865431   1 244577777788876531  11111                                           


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                                                           +.+++.++.+|
T Consensus       158 ---------------------------------------------------------------------~~~v~~~~~~d  168 (402)
T PRK07505        158 ---------------------------------------------------------------------ETEVETIDHND  168 (402)
T ss_pred             ---------------------------------------------------------------------CCeEEEeCCCC
Confidence                                                                                 22345555556


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccCCC-ccCceE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERDGQ-LHNMDI  322 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~~~-~~~~di  322 (514)
                      ++.+++.+.+    +++++++.+|+||+|.+.++++|.++|++||+++|+||+|+++.+|+.+.++. +..+. ..+.++
T Consensus       169 ~~~l~~~~~~----~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i  244 (402)
T PRK07505        169 LDALEDICKT----NKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTI  244 (402)
T ss_pred             HHHHHHHHhc----CCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeE
Confidence            6666665532    35677778889999999999999999999999999999997655555543321 22332 235578


Q ss_pred             EEcCCcccccCCCeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        323 ISGTLGKAFGNIGGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       323 ~~~S~sK~lg~~GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +++|++|.+++.||+++. ++++++.+......++++.+.++..++++.++++...++.+.+..++++++...+.+.+..
T Consensus       245 ~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  324 (402)
T PRK07505        245 IAASLGKAFGASGGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPT  324 (402)
T ss_pred             EEEechhhhhccCeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh
Confidence            889999999987788764 7788888887776776666677888999999998665566555566665555544333211


Q ss_pred             CCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       402 ~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      .   .......+..+.+++.....++.+.|+ ++||.+.+..++..+.+.+++|++++..+|++|+++++++|++++++
T Consensus       325 ~---~~g~~~~i~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        325 E---QSGSFLPIRLIYIGDEDTAIKAAKQLL-DRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             c---CCCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence            1   111122233344443234678899996 89999998766544445579999999999999999999999998764

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.98  E-value=6.1e-30  Score=262.22  Aligned_cols=337  Identities=19%  Similarity=0.180  Sum_probs=245.9

Q ss_pred             CCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         16 SNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        16 ~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      +|++++||.+   +.++|  ||+|.+++.+++++.... + ..   ...+...+++++++++++.++++|++||++|++.
T Consensus        33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~-~-~~---~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~  107 (397)
T TIGR03246        33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHI-G-NG---YTNEPVLRLAKKLVDATFADKVFFCNSGAEANEA  107 (397)
T ss_pred             CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccc-c-Cc---cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHH
Confidence            7889999976   67786  799999999999973211 1 11   1246788999999999988899999999999999


Q ss_pred             chhhccc-------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         91 TLFTLGK-------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        91 ~l~~l~~-------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      +++.+..       .++.+.|..+..+|.++..+++..+.....                                    
T Consensus       108 Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~------------------------------------  151 (397)
T TIGR03246       108 ALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYS------------------------------------  151 (397)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccc------------------------------------
Confidence            9986532       124455666666666665544443321100                                    


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                                                      ..+......+..++++
T Consensus       152 ----------------------------------------------------------------~~~~~~~~~~~~~~~~  167 (397)
T TIGR03246       152 ----------------------------------------------------------------QGFAPLPGGIKHAPYN  167 (397)
T ss_pred             ----------------------------------------------------------------cCCCCCCCceEEeCCC
Confidence                                                                            0000011234567788


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLH  318 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~  318 (514)
                      |++.+++.+.    +++++|++++++++.|...+    +++|+++|++||+++|+||+|+ |+ |+.|..+ ...+++  
T Consensus       168 d~~~l~~~l~----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~-Gr~G~~~a~~~~gv--  239 (397)
T TIGR03246       168 DLAAAKALIS----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQT-GV-GRTGELYAYMHYGV--  239 (397)
T ss_pred             CHHHHHHHhc----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CccccchhhhhcCC--
Confidence            8888888774    45899999999999897754    8999999999999999999996 33 3333322 223444  


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .+|++  +++|.+++ |   |++++++++.+.+.......  +++.+++.++++.++|+.+.++   ++.++++++.+++
T Consensus       240 ~pDi~--t~~K~lgg-G~pigav~~~~~i~~~~~~~~~~~--t~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~~~~l  311 (397)
T TIGR03246       240 TPDIL--TSAKALGG-GFPIGAMLTTTEIAAHLKVGTHGT--TYGGNPLACAVAGKVLDLVNTP---ELLAGVKQRHDLF  311 (397)
T ss_pred             CCCEE--EeehhhhC-CcceeEEEEcHHHHHhccCCCcCC--CCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHH
Confidence            78998  89999985 6   88888999988886543333  4467889999999999987543   4788899999999


Q ss_pred             HHHHHhCC--Ccc---ccCCCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848        396 RNELIQIG--FPV---EHTPSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       396 ~~~L~~~g--~~~---~~~~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id  468 (514)
                      .+.|++++  +.+   +...+.++.+.+.+.  .....++..|+ ++|+.+.+.       +.+.+|++++..+|++|++
T Consensus       312 ~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-------g~~~lR~~p~~~~t~~~i~  383 (397)
T TIGR03246       312 VDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAA-EEGVIALIA-------GPNVVRFAPSLVISDDDID  383 (397)
T ss_pred             HHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHH-HCCeEEeec-------CCCEEEEeCCCCCCHHHHH
Confidence            99998863  222   234566777776542  34678888896 899998642       2468999999999999999


Q ss_pred             HHHHHHHHHHHHc
Q psy16848        469 KFVTDLLAVWKSL  481 (514)
Q Consensus       469 ~~~~~l~~~l~~~  481 (514)
                      +++++|+++++++
T Consensus       384 ~~~~~l~~~l~~~  396 (397)
T TIGR03246       384 EGLARFERAIEQV  396 (397)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.98  E-value=2.4e-30  Score=259.24  Aligned_cols=344  Identities=19%  Similarity=0.197  Sum_probs=235.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccccccchhhccc-cCCCceEEe
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVANDSTLFTLGK-MIPGLHYIS  106 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a~~~~l~~l~~-~~~gd~v~~  106 (514)
                      ||.|++++.+|++++......  ..+  .+...++.+++.+.+.   .++++|.+|||+||++|++.... +++...|..
T Consensus        74 hP~Vv~Av~~q~~~~~h~~~~--~~~--~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf  149 (447)
T COG0160          74 HPRVVEAVKRQLAKLNHTHTR--DLY--YEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAF  149 (447)
T ss_pred             CHHHHHHHHHHHHHhhcccCC--ccc--chhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence            899999999999986533222  222  2777888899998874   46689999999999999953322 223333444


Q ss_pred             cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848        107 DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  186 (514)
Q Consensus       107 ~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (514)
                      ...+|..+..++++++.....-                                                          
T Consensus       150 ~~afHG~T~galslT~~~~~~~----------------------------------------------------------  171 (447)
T COG0160         150 DGAFHGRTLGALSLTGSKPPYK----------------------------------------------------------  171 (447)
T ss_pred             CCcccccchhhHHhccCccccc----------------------------------------------------------
Confidence            4444444443333333221100                                                          


Q ss_pred             cccccccCCCceeeecCchhhHHHHHhhccCC--ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc--cCCCceE
Q psy16848        187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNP--EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM--DVKIPKL  262 (514)
Q Consensus       187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~--~~~~~~~  262 (514)
                               .|              +..+..+  .++.|.+|...+...+   ........+.+++.+.+.  ...++++
T Consensus       172 ---------~~--------------~~~~~~~v~~~Pyp~~yr~p~~~~~---~~~~~~~~~~~e~~i~~~~~~~~~vAa  225 (447)
T COG0160         172 ---------AG--------------FGPLPPGVYHVPYPNPYRCPFGIGG---EECGDDALEYIERALFDLEVGPEEVAA  225 (447)
T ss_pred             ---------cC--------------CCCCCCCeEEecCCccccCcccCch---hhhhHHHHHHHHHHHHhhcCCCCceeE
Confidence                     00              0001110  1122222211110000   000011234455544443  2356899


Q ss_pred             EEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccccCCC--
Q psy16848        263 VAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--  335 (514)
Q Consensus       263 vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--  335 (514)
                      ++++++++..|.+.+    +++++++|++||+++|+||+|+ +|+.|+.+  ..+.+++  .+||+  +++|.+|. |  
T Consensus       226 iI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~f--a~E~~gv--~PDiv--t~aK~ig~-G~P  298 (447)
T COG0160         226 IIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMF--AFEHFGV--EPDIV--TLAKSLGG-GLP  298 (447)
T ss_pred             EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccch--hhhhcCC--CCCEE--EecccccC-CCc
Confidence            999999999999988    8999999999999999999999 77777432  3456666  89999  99999988 6  


Q ss_pred             -eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCccc---cC
Q psy16848        336 -GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPVE---HT  409 (514)
Q Consensus       336 -G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~---~~  409 (514)
                       |.++.++++.+ .......+  ++..|++.++++.++|+.+.++.   +.++..++.+++++.|.++  .++.+   ..
T Consensus       299 l~avv~r~ei~~-~~~g~~~~--Tf~GNpva~Aaa~AvL~vie~e~---L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG  372 (447)
T COG0160         299 LSAVVGRAEIMD-WPPGGHGG--TFGGNPVACAAALAVLDVIEEEN---LLERAAELGEYLRDRLEELQEKHPLIGDVRG  372 (447)
T ss_pred             eeEEeccHHhcc-cCCcccCC--CCCcCHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHhhcCceecccc
Confidence             88999999888 54444444  56899999999999999886665   8899999999999999887  44443   34


Q ss_pred             CCcEEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        410 PSHIIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       410 ~~~~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .|.|+.+++..        ......+++.++ ++|+.+...     ....+.+||.+++..+++++|+++++|++++++.
T Consensus       373 ~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~-~~Glil~~~-----G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         373 LGLMIGVELVKDRDTKEPDAELAAKIVARAF-ERGLLLLTC-----GPHGNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             cceEEEEEEecCCCCCCCCHHHHHHHHHHHH-HcCCEEecc-----CCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            56788877642        134678889996 999987632     2236899999999999999999999999998764

>KOG1357|consensus

Probab=99.98  E-value=1e-30  Score=252.19  Aligned_cols=355  Identities=29%  Similarity=0.426  Sum_probs=299.8

Q ss_pred             eeeecccCCCCC----ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhh
Q psy16848         19 VTCRLSSVQYKV----PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~   94 (514)
                      .+++++|-+|++    +-.-.+++.+.+++|+.+.++++...|+.+.+.++|+..|+++|.++++++.-|..+|.+.+.+
T Consensus       137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~  216 (519)
T KOG1357|consen  137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPS  216 (519)
T ss_pred             eeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcce
Confidence            467888899996    3456677888899999988889888899999999999999999999999999999999999999


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcc-cCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      +..  ||..|+.++..|.|++.++++.|+.+..|+|+|+++||++|++.- .++|+-                       
T Consensus       217 l~~--~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~T-----------------------  271 (519)
T KOG1357|consen  217 LLG--KGSLIISDELNHASLITGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKT-----------------------  271 (519)
T ss_pred             eec--CCcceeeccccchheeccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCc-----------------------
Confidence            976  999999999999999999999999999999999999999998643 222221                       


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                                      
T Consensus       272 --------------------------------------------------------------------------------  271 (519)
T KOG1357|consen  272 --------------------------------------------------------------------------------  271 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCC-ccCceEEEcCCccccc
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ-LHNMDIISGTLGKAFG  332 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~-~~~~di~~~S~sK~lg  332 (514)
                       +...+..+++++...++-|.+..++++.++++++..+++.||+|+.|..|+.|+++.++++. ..+.||.+++|.|.+|
T Consensus       272 -hrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfg  350 (519)
T KOG1357|consen  272 -HRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFG  350 (519)
T ss_pred             -CCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcc
Confidence             00011246778888889999999999999999999999999999999999999999888876 4678999999999999


Q ss_pred             CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848        333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS----QEGVELRAKHQDIVAYLRNELIQIGFPVEH  408 (514)
Q Consensus       333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  408 (514)
                      ..||++.+++++++.++.......+.+.+|++.+.....+++.+..    ...++..+++.++..+++..|++.|+.+.+
T Consensus       351 a~GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG  430 (519)
T KOG1357|consen  351 AAGGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYG  430 (519)
T ss_pred             cccceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEec
Confidence            9899999999999999887777777888899988888888887753    335778888999999999999999988775


Q ss_pred             C-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        409 T-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       409 ~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      . .++++++.+-.......+.+.|+ +++|.+....+|..+.-....|++.+..+|.|+++++++.+.++=+.
T Consensus       431 ~~dSpVvplll~~~~k~~~f~r~~l-~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~  502 (519)
T KOG1357|consen  431 NNDSPVVPLLLYGPAKIVAFSREML-ERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGDE  502 (519)
T ss_pred             CCCCCcceeeecCcccccHHHHHHH-hcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhchh
Confidence            5 45555554433344567888886 88988888888777767788999999999999999999998876533

>PLN00175 aminotransferase family protein; Provisional

Probab=99.97  E-value=4.8e-29  Score=256.79  Aligned_cols=341  Identities=18%  Similarity=0.166  Sum_probs=244.0

Q ss_pred             ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecc-cccccc
Q psy16848         18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSC-YVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sG-t~a~~~   90 (514)
                      ...+|+..+.  +-.++.+.+++.+.+.. +  ...+....|..++.+.+.+.+.+..|.    +..+++|+| ++|+..
T Consensus        54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~-~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~  130 (413)
T PLN00175         54 HGAINLGQGFPNFDGPDFVKEAAIQAIRD-G--KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAA  130 (413)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHHhc-C--CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHH
Confidence            4578885433  22366788888888775 2  122233345667777777777666553    223555554 667777


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  |||.|+++++.|......++..|++++.++..                                       
T Consensus       131 ~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~---------------------------------------  169 (413)
T PLN00175        131 TILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKTVTLR---------------------------------------  169 (413)
T ss_pred             HHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEECC---------------------------------------
Confidence            7777765  99999999999988877777666665544321                                       


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                             ..++..+.+
T Consensus       170 -----------------------------------------------------------------------~~~~~~~~~  178 (413)
T PLN00175        170 -----------------------------------------------------------------------PPDFAVPED  178 (413)
T ss_pred             -----------------------------------------------------------------------cccCCCCHH
Confidence                                                                                   011222223


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      .+++...++++++++++|+||||.+++   +++|.++|++|++++|+||+|....++....++....+ ..+.+++++||
T Consensus       179 ~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~-~~~~vi~i~Sf  257 (413)
T PLN00175        179 ELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPG-MYERTVTMNSL  257 (413)
T ss_pred             HHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCC-CcCcEEEEecc
Confidence            333333456899999999999999998   78899999999999999999995544332223333332 23678999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      ||.++.+|   ||+++++++++.+.......  ..+.+.+.+.++.++|+.. +.++++.++.++++++.+.+.|++.|+
T Consensus       258 SK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~--~~~~s~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~  334 (413)
T PLN00175        258 GKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL--TFATATPMQWAAVAALRAP-ESYYEELKRDYSAKKDILVEGLKEVGF  334 (413)
T ss_pred             hhhccCcchheeeeEeCHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999778   99999999999887765444  3367788888888888643 346778899999999999999999888


Q ss_pred             ccccCCCc-EEEEEeCC-Cc-cHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        405 PVEHTPSH-IIPIKIGN-PA-LNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       405 ~~~~~~~~-~~~i~l~~-~~-~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .+..+.++ +++++++. +. +..+++..|++++||.+.|+..+..  ..+.+++|++++  .+++++++++++|+++++
T Consensus       335 ~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        335 KVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             eecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence            87777665 46666632 22 4678999987678999999986543  234679999998  478999999999998875

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.9e-29  Score=254.19  Aligned_cols=353  Identities=21%  Similarity=0.275  Sum_probs=260.8

Q ss_pred             cchhhhhcC-Cc--eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCc--CcccCcchHHHHHHHHHHhHcCCC--cEEE
Q psy16848          8 LNFKQVHKS-NR--VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGT--RNISGNSLFHEKLEEDVAKLHQKE--AGLV   80 (514)
Q Consensus         8 ~~~~~~~~~-g~--~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~--~~i~   80 (514)
                      .+|+..... +.  .|.|.+.... .+..+.+++.+.++.+..+.+..  .......+.+++.++.+++++|.+  +.|+
T Consensus        10 ~~fp~l~~~~~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIv   88 (405)
T COG0520          10 ADFPALKREVGKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIV   88 (405)
T ss_pred             hhCHHHhhccCCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            344444433 23  3444443333 46789999999998766554422  222233568899999999999966  3455


Q ss_pred             Ee-ccccccccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccc
Q psy16848         81 FT-SCYVANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS  158 (514)
Q Consensus        81 ~~-sGt~a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~  158 (514)
                      ++ +.|+++..+..++.. ..+||+|++++.+|++....+                                        
T Consensus        89 ft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw----------------------------------------  128 (405)
T COG0520          89 FTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPW----------------------------------------  128 (405)
T ss_pred             EeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHH----------------------------------------
Confidence            55 556676666666642 348999999999999987322                                        


Q ss_pred             ccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEE
Q psy16848        159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKI  238 (514)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~  238 (514)
                                                                                          .......|++++
T Consensus       129 --------------------------------------------------------------------~~~~~~~Ga~v~  140 (405)
T COG0520         129 --------------------------------------------------------------------QELAKRTGAKVR  140 (405)
T ss_pred             --------------------------------------------------------------------HHHHHhcCcEEE
Confidence                                                                                222234466666


Q ss_pred             EecC-CChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCc
Q psy16848        239 IYRH-NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL  317 (514)
Q Consensus       239 ~v~~-~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~  317 (514)
                      .++. ++.....+.+++..+++|+++.+++++|.+|.+.|+++|.++|+++|+++++|.+|+.+..        +.+...
T Consensus       141 ~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~--------~idv~~  212 (405)
T COG0520         141 VIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL--------PIDVQE  212 (405)
T ss_pred             EEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCcc--------CCCchh
Confidence            6663 3445555666667788999999999999999999999999999999999999999997765        333335


Q ss_pred             cCceEEEcCCcccc-cCCC-eEEEecHHHHHHHHhhcCceE-------------------ec-cCCcHHHHHHHHHHHHH
Q psy16848        318 HNMDIISGTLGKAF-GNIG-GYIVGTKNFIDTIRSYAAGFI-------------------FT-TSLPPTVLAGAREAIRI  375 (514)
Q Consensus       318 ~~~di~~~S~sK~l-g~~G-G~l~~~~~~~~~l~~~~~~~~-------------------~~-~~~~~~~~~a~~~~l~~  375 (514)
                      .++|++++|.|||+ |+.| |++++++++++.+.+...+..                   +. .+.+......+.+++++
T Consensus       213 l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~  292 (405)
T COG0520         213 LGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDY  292 (405)
T ss_pred             cCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHH
Confidence            58999999999955 6668 999999999998855432210                   11 12344555666788888


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC-
Q psy16848        376 LSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV-  449 (514)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~-  449 (514)
                      +.+.+++++.++.+++.+++.+.|++. ++.+..+    ..+++.+.++. ....+++..| .++||.++.++.|..+. 
T Consensus       293 ~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~-~~~~dv~~~L-~~~gI~vr~g~~ca~p~~  370 (405)
T COG0520         293 LLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKG-IHPHDVATLL-DEKGIAVRAGHHCAQPLH  370 (405)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCC-CCHHHHHHHH-HhCCeEEEeccccccHHH
Confidence            877788899999999999999999998 6776654    46688888775 3578999999 58999999998876542 


Q ss_pred             ----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        450 ----GEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       450 ----~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                          -...+|+|++.++|+||||++++.|+++.+
T Consensus       371 ~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         371 RLLGVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             HhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence                134599999999999999999999998754

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.97  E-value=3.7e-29  Score=257.32  Aligned_cols=337  Identities=20%  Similarity=0.240  Sum_probs=247.4

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYV   86 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~   86 (514)
                      .+|+.++||.+   +.+++  ||++.+++.+++++++....  .  +. .+...+++++++++++.   +++++++||++
T Consensus        40 ~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~--~--~~-~~~~~~la~~l~~~~~~~~~~~v~~~~sgse  114 (398)
T PRK03244         40 VDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSN--L--FA-TEPQIALAERLVELLGAPEGGRVFFCNSGAE  114 (398)
T ss_pred             CCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccC--c--cC-CHHHHHHHHHHHHhCCCCCCCEEEEeCchHH
Confidence            37888999976   55665  59999999999998664321  1  11 34557899999999874   36788899999


Q ss_pred             ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      |+..+++.+...++.+.|.+++.+|.....++...+......                                      
T Consensus       115 a~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~--------------------------------------  156 (398)
T PRK03244        115 ANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRA--------------------------------------  156 (398)
T ss_pred             HHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCccccc--------------------------------------
Confidence            999999876553334666666777766665554433211100                                      


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                                                    .+...+.++..++.+|.+
T Consensus       157 --------------------------------------------------------------~~~~~~~~~~~~~~~d~~  174 (398)
T PRK03244        157 --------------------------------------------------------------PFEPLPGGVEHVPYGDVD  174 (398)
T ss_pred             --------------------------------------------------------------CCCCCCCCceEeCCCCHH
Confidence                                                                          000112345556666777


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc-cccCCCccCc
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI-GERDGQLHNM  320 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~-~~~~~~~~~~  320 (514)
                      .+++.+.    +++++|++++++||+|.++|    +++|.++|++||+++|+||+|+ +|..   +.++ .+..+.  .+
T Consensus       175 ~l~~~~~----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~---g~~~~~~~~~~--~p  245 (398)
T PRK03244        175 ALAAAVD----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRT---GAWFAHQHDGV--TP  245 (398)
T ss_pred             HHHHhhc----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccc---chHHhhhhhCC--CC
Confidence            7777663    46899999999999999998    8999999999999999999998 4443   3222 123333  68


Q ss_pred             eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      |++  +|+|++++ |   |++++++++++.+.......  +.+.+++.++++.++|+.+.++.   ..++++++.+++.+
T Consensus       246 Di~--t~sK~l~~-G~~ig~~~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~~~~~~---~~~~~~~~~~~l~~  317 (398)
T PRK03244        246 DVV--TLAKGLGG-GLPIGACLAFGPAADLLTPGLHGS--TFGGNPVACAAALAVLDTIASEG---LLENAERLGEQLRA  317 (398)
T ss_pred             CEE--EEchhhhC-CcccEEEEEcHHHHhhccCCCCcC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Confidence            887  88999985 5   88999998888776543333  44789999999999999775444   67888899999999


Q ss_pred             HHHhCCCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        398 ELIQIGFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       398 ~L~~~g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      .|++++.+.   +...+.++++.++.. ....+.+.|+ ++||.+.+.       +.+.+|++++..++++|+++++++|
T Consensus       318 ~L~~~~~~~~~~v~g~g~~~~i~~~~~-~~~~~~~~l~-~~Gv~~~~~-------~~~~iR~~p~~~~t~~~i~~~~~~l  388 (398)
T PRK03244        318 GIEALGHPLVDHVRGRGLLLGIVLTAP-VAKAVEAAAR-EAGFLVNAV-------APDVIRLAPPLIITDAQVDAFVAAL  388 (398)
T ss_pred             HHHhcCCCceeeEeeccEEEEEEEecc-HHHHHHHHHH-HCCeEEeec-------CCCEEEEECCCcCCHHHHHHHHHHH
Confidence            999875542   234567888888542 4677888996 899999752       2368999999989999999999999


Q ss_pred             HHHHHHcC
Q psy16848        475 LAVWKSLD  482 (514)
Q Consensus       475 ~~~l~~~~  482 (514)
                      ++++++++
T Consensus       389 ~~~l~~~~  396 (398)
T PRK03244        389 PAILDAAA  396 (398)
T ss_pred             HHHHHhcc
Confidence            99998754

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.97  E-value=2.6e-29  Score=257.88  Aligned_cols=332  Identities=18%  Similarity=0.195  Sum_probs=240.5

Q ss_pred             CCceeeecccCC---CC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         16 SNRVTCRLSSVQ---YK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      +|++++|+.+.-   .+  .||++.+++.++++++.....   .+  ..+...+++++++++.+.+++++++||++|++.
T Consensus        38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~---~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~  112 (396)
T PRK04073         38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSR---AF--HSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVET  112 (396)
T ss_pred             CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccc---cc--CCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHH
Confidence            566666664321   12  389999999999998654321   11  346778999999999888899999999999999


Q ss_pred             chhhccc---------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         91 TLFTLGK---------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        91 ~l~~l~~---------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +++.+..         .++.+.|..+..+|..+..+++..+........                .|             
T Consensus       113 Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~----------------~~-------------  163 (396)
T PRK04073        113 AIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGF----------------GP-------------  163 (396)
T ss_pred             HHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCC----------------CC-------------
Confidence            9987632         123456667777888887666655421110000                00             


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                             .-..+..++
T Consensus       164 -----------------------------------------------------------------------~~~~~~~~~  172 (396)
T PRK04073        164 -----------------------------------------------------------------------MLPGIKKIP  172 (396)
T ss_pred             -----------------------------------------------------------------------CCCCceEeC
Confidence                                                                                   001134456


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccCC
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERDG  315 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~~  315 (514)
                      .+|.+.+++.+.    ++++++++++++||+|.+.|    +++|.++|++||+++|+||+|+ +|..|.   .+. +..+
T Consensus       173 ~~d~~~l~~~i~----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~---~~~~~~~~  245 (396)
T PRK04073        173 YGDLEALKAAIT----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK---LFACDWDN  245 (396)
T ss_pred             CCCHHHHHHhcc----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH---HHHhhhcC
Confidence            667777666653    46899999999999999987    8999999999999999999999 444332   111 2233


Q ss_pred             CccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                        ..+|++  +++|.+|..|   |++++++++.+.+.......  +.+.+++.++++.++|+.+.++.   +.++.++++
T Consensus       246 --~~pdi~--~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~--t~~~~~~~~aaa~aaL~~~~~~~---l~~~~~~~~  316 (396)
T PRK04073        246 --VTPDMY--ILGKALGGGVFPISCVAANRDILGVFTPGSHGS--TFGGNPLACAVSIAALEVLEEEK---LPERSLELG  316 (396)
T ss_pred             --CCCCEE--EecccccCCCCcceEEEEcHHHHhhhcCCCCCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence              267888  7899998754   89999999998886543333  44678999999999999775444   667778889


Q ss_pred             HHHHHHHHhCCC---ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        393 AYLRNELIQIGF---PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       393 ~~l~~~L~~~g~---~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      +++.+.|++++.   ....+.+.++.+.++.  ...++.++|+ ++||.+.+.       +.+++|++++..+|++++++
T Consensus       317 ~~l~~~L~~l~~~~i~~~~~~g~~~~~~~~~--~~~~~~~~l~-~~Gv~~~~~-------~~~~iRi~p~l~~t~e~i~~  386 (396)
T PRK04073        317 EYFKEQLKEIDNPMIKEVRGRGLFIGVELNE--PARPYCEALK-EEGLLCKET-------HETVIRFAPPLVITKEELDW  386 (396)
T ss_pred             HHHHHHHHhhcCCcccceecceEEEEEEecc--hHHHHHHHHH-HCCeEEecC-------CCCEEEEECCcccCHHHHHH
Confidence            999999988643   2234567788887764  3678889996 899998642       24689999999999999999


Q ss_pred             HHHHHHHHH
Q psy16848        470 FVTDLLAVW  478 (514)
Q Consensus       470 ~~~~l~~~l  478 (514)
                      ++++|++++
T Consensus       387 ~~~~l~~~l  395 (396)
T PRK04073        387 AFEKIKAVL  395 (396)
T ss_pred             HHHHHHHHh
Confidence            999998864

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.97  E-value=5.6e-29  Score=244.55  Aligned_cols=332  Identities=22%  Similarity=0.263  Sum_probs=241.2

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-CcEEEEeccccccccchhhccccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-EAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~  109 (514)
                      ||.|++++.+++++ |.+++.+      .+...++.+.+.+.+.. +.+-|++|||+|++.++                 
T Consensus        71 ~p~V~~Av~~~l~~-G~~fg~P------te~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAi-----------------  126 (432)
T COG0001          71 HPAVVEAVQEQLER-GLSFGAP------TELEVELAELLIERVPSIEKVRFVNSGTEATMSAI-----------------  126 (432)
T ss_pred             CHHHHHHHHHHHHh-cCCCCCC------CHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHH-----------------
Confidence            79999999999998 5555433      46778899999999876 89999999999999999                 


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                                                   +|+|..++|+|++.|+|+||.-.|..                ++.-+-..+
T Consensus       127 -----------------------------RlARa~TgR~kIikF~G~YHG~~D~~----------------lv~agsg~~  161 (432)
T COG0001         127 -----------------------------RLARAYTGRDKIIKFEGCYHGHSDSL----------------LVKAGSGAA  161 (432)
T ss_pred             -----------------------------HHHHHhhCCCeEEEEcCCCCCCccHH----------------HhhcCcCcc
Confidence                                         56677889999999999997433222                111000000


Q ss_pred             ccc-cCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecC
Q psy16848        190 LYG-EHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV  268 (514)
Q Consensus       190 ~~~-~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~  268 (514)
                      ..| +...|+.                               ...-..+..+++||.+.+++.+++.. +..++|+++++
T Consensus       162 t~g~p~s~Gvp-------------------------------~~~a~~ti~~~yND~~al~~~~~~~g-~~IAaVIvEPv  209 (432)
T COG0001         162 TLGSPSSPGVP-------------------------------ADVAKHTLVLPYNDLEALEEAFEEYG-DDIAAVIVEPV  209 (432)
T ss_pred             cCCCCCCCCCC-------------------------------hhhhccEEEecCCCHHHHHHHHHHcC-CcEEEEEeccc
Confidence            011 1111110                               11223577888999999999999874 34899999999


Q ss_pred             CCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEec
Q psy16848        269 HSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGT  341 (514)
Q Consensus       269 ~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~  341 (514)
                      ....|.+.|    +++|+++|++||++||.||+.+..+....  +...++++  .+|+.  +++|.+|+ |   |++.++
T Consensus       210 ~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~g--Gaq~~~gi--~PDlt--tlGKiIGG-GlP~ga~gGr  282 (432)
T COG0001         210 AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALG--GAQGYYGV--EPDLT--TLGKIIGG-GLPIGAFGGR  282 (432)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCc--ccccccCc--Ccchh--hhhhhhcC-CcceeeeccH
Confidence            999999988    89999999999999999999993333212  35567776  89999  99999997 6   889999


Q ss_pred             HHHHHHHHhhcCceE-eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH----hCCCccc-cCCCcEEE
Q psy16848        342 KNFIDTIRSYAAGFI-FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI----QIGFPVE-HTPSHIIP  415 (514)
Q Consensus       342 ~~~~~~l~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~-~~~~~~~~  415 (514)
                      .++.+.+.+....+. -+++.+++.++|+.++++.+.+..  ...+++.++.++|.+.|+    +.++++. ...+.++.
T Consensus       283 ~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~--~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~  360 (432)
T COG0001         283 AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEE--GVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFG  360 (432)
T ss_pred             HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEE
Confidence            999998876553321 245889999999999999886522  145555555555555554    4588764 34566777


Q ss_pred             EEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        416 IKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       416 i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +.+.+.             .....+.+.++ ++||++.|..+.       ..-+  +..+|+++|++.+++++++++++.
T Consensus       361 i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~GV~l~ps~~e-------a~fl--S~ahte~di~~~~~a~~~~~~~~~  430 (432)
T COG0001         361 IFFTEEGVRNYADAKRSDVERFAKFFHHLL-NRGVYLAPSQFE-------AGFL--STAHTEEDIDRTLEAADEAFKELA  430 (432)
T ss_pred             EEecCCCCCCHHHHHhhchHHHHHHHHHHH-hCCcccCCcccc-------ceee--ecccCHHHHHHHHHHHHHHHHHhh
Confidence            766541             11345667786 999999876641       1223  445899999999999999988764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.97  E-value=1.2e-28  Score=250.57  Aligned_cols=319  Identities=14%  Similarity=0.123  Sum_probs=231.8

Q ss_pred             hHHHHHHHHHHHhCCCCCCcCcccCc-----chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEec
Q psy16848         33 GGRKCLGEALEKFGTGAGGTRNISGN-----SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISD  107 (514)
Q Consensus        33 ~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~  107 (514)
                      .+.++..+++++|+.+++++++..|.     .+...++++.+++++|.+.+++++||++++..++.++..  +||.|+++
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~--~gd~Vl~~   96 (370)
T TIGR02539        19 VLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCK--EGDWVVLD   96 (370)
T ss_pred             CCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhC--CCCEEEEC
Confidence            46677888888888877766655443     345678888899999999999999999999999988876  99999999


Q ss_pred             CccchhhhhhhhcCCCCeeeccCC-------ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceE
Q psy16848        108 AGNHASMIQGIRNSSAPKIIYRHN-------DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT  180 (514)
Q Consensus       108 ~~~h~~~~~~~~~~~~~~~~~~~~-------d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (514)
                      .+.|.+++.+++..|++++.++++       |++++++.+.+...                                   
T Consensus        97 ~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-----------------------------------  141 (370)
T TIGR02539        97 GLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVED-----------------------------------  141 (370)
T ss_pred             CcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhh-----------------------------------
Confidence            999999999889899988887764       44444444322100                                   


Q ss_pred             EeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCc
Q psy16848        181 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP  260 (514)
Q Consensus       181 ~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~  260 (514)
                                                                                                ...+++
T Consensus       142 --------------------------------------------------------------------------~~~~~~  147 (370)
T TIGR02539       142 --------------------------------------------------------------------------ESGKPP  147 (370)
T ss_pred             --------------------------------------------------------------------------ccCCCc
Confidence                                                                                      001247


Q ss_pred             eEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC--eEE
Q psy16848        261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--GYI  338 (514)
Q Consensus       261 ~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--G~l  338 (514)
                      ++|++++++||+|...|+++|.++|+++|+++|+|++|++|..+..        ....+.|++++|+||++++.|  ||+
T Consensus       148 ~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~--------~~~~~~di~v~s~sK~~~~~g~~G~l  219 (370)
T TIGR02539       148 VLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVS--------AKEIGADFIVGSGHKSMAASGPCGVL  219 (370)
T ss_pred             EEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCC--------HHHcCCCEEEeeCcccccCCCCEEEE
Confidence            8999999999999999999999999999999999999997643211        112357899999999998756  999


Q ss_pred             EecHHHHHHHHhhcCceEecc------CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc---cC
Q psy16848        339 VGTKNFIDTIRSYAAGFIFTT------SLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE---HT  409 (514)
Q Consensus       339 ~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~---~~  409 (514)
                      ++++++++.+.....++.++.      +.....+.++.++++.. .+.+++..+.. ++.+++++.|+++|+.+.   ++
T Consensus       220 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~l~~~~~~~-~~~~~l~~~L~~~g~~~~~~~~s  297 (370)
T TIGR02539       220 GMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHV-VERVKRWDEEV-KKTRWFVAELEDIGFIQLGQKPK  297 (370)
T ss_pred             EECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhCCcEEEccCCC
Confidence            999999999887665443211      11112344445556532 22333333333 345689999999988753   45


Q ss_pred             CCcEEEEEeCCC--------ccHHHHHHHHHHhCCeE-EecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        410 PSHIIPIKIGNP--------ALNTKICDMLLKEKGHY-VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       410 ~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~-v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      .++++.+.++..        .....+.+.|. ++||. +++       ..++++|+++. ..+++|+++++++|++++++
T Consensus       298 ~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~-e~GI~~ir~-------~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       298 EHDLVKFETPGFHEIAQKHKRRGYFLYEELK-KRGIHGIRS-------GQTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             cCceEEEECCchhHHhhhhccccHHHHHHHH-hCCCccccC-------CcceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence            667777776521        12346888885 89997 442       12458999984 57999999999999998765


Q ss_pred             c
Q psy16848        481 L  481 (514)
Q Consensus       481 ~  481 (514)
                      +
T Consensus       369 ~  369 (370)
T TIGR02539       369 Y  369 (370)
T ss_pred             c
Confidence            3

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK09082 methionine aminotransferase; Validated

Probab=99.97  E-value=1.5e-28  Score=251.65  Aligned_cols=339  Identities=16%  Similarity=0.179  Sum_probs=245.3

Q ss_pred             Cceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-----cEEEEeccccccc
Q psy16848         17 NRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-----AGLVFTSCYVAND   89 (514)
Q Consensus        17 g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~i~~~sGt~a~~   89 (514)
                      +..++|+..  .++-.+|.+.+++.+.++...   ..+....|..++.+++++++.++++.+     ..++++++++++.
T Consensus        29 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~---~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~  105 (386)
T PRK09082         29 EHGAINLSQGFPDFDGPPYLVEALAYAMAAGH---NQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALF  105 (386)
T ss_pred             hCCEEEecCCCCCCCCCHHHHHHHHHHHHcCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHH
Confidence            345788865  333346788888888776421   222233466788888888888887752     2444455577888


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.+.|.+....++..|.+++.++... +.                                  
T Consensus       106 ~~~~~~~~--~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~----------------------------------  148 (386)
T PRK09082        106 AAILALVR--PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PD----------------------------------  148 (386)
T ss_pred             HHHHHHcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-cc----------------------------------
Confidence            88888865  999999999999998888877777776654410 00                                  


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                .                                             ..|.+.++
T Consensus       149 --------------------------~---------------------------------------------~~d~~~l~  157 (386)
T PRK09082        149 --------------------------F---------------------------------------------RVDWQRFA  157 (386)
T ss_pred             --------------------------c---------------------------------------------cCCHHHHH
Confidence                                      0                                             01334444


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+    .++++++++++|+||||.+++   +++|.++|++|++++|+||+|.....+ ..+.++....+ ..+.+++++
T Consensus       158 ~~~----~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~-~~~~~i~~~  232 (386)
T PRK09082        158 AAI----SPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE-LRERAFVVS  232 (386)
T ss_pred             Hhc----CccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcC-ccCcEEEEe
Confidence            443    346889999999999999987   789999999999999999999854432 22323333222 235789999


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ||||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++...++. ...+++++++.++++++.+.+.|++.
T Consensus       233 S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~  309 (386)
T PRK09082        233 SFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYN--TFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAALANS  309 (386)
T ss_pred             echhhccchhhhhhhhhCCHHHHHHHHHHHhhh--cCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998778   99999999999888765443  235677777777666653 24566778888999999999999998


Q ss_pred             CCccccCCCc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCC-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTPSH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPT-VPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       403 g~~~~~~~~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~-~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      ++.+..+.++ ++++++++  ..+..++++.|++++||.+.|+..+. .+.+.+++|++++.  +++++++.+++|++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~--~~~~l~~~~~rl~~  385 (386)
T PRK09082        310 RFKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK--QEETLDAAAERLCQ  385 (386)
T ss_pred             CCcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            8887766665 56677763  34678899987678899999998543 24456799999983  68889999988875

>PRK07682 hypothetical protein; Validated

Probab=99.97  E-value=3.5e-28  Score=248.41  Aligned_cols=342  Identities=15%  Similarity=0.138  Sum_probs=239.8

Q ss_pred             eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEeccccccccc
Q psy16848         19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDST   91 (514)
Q Consensus        19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~~   91 (514)
                      ..+++..+..  ...+.+.+++.+.+...   ...+....|..++.+++.+++.+.+|.    + +.++++++++|+..+
T Consensus        21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~   97 (378)
T PRK07682         21 GVISLGVGEPDFVTPWNVREASIRSLEQG---YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA   97 (378)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence            5678864332  23456788888776531   111222345566667777777665443    2 345445557788888


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.+++.  |||.|+++.+.|......++..|.+++.++... +                                     
T Consensus        98 ~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~-------------------------------------  137 (378)
T PRK07682         98 MRAIIN--PGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTL-E-------------------------------------  137 (378)
T ss_pred             HHHhCC--CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCC-c-------------------------------------
Confidence            888866  999999999999887766666666655433200 0                                     


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                            .+.                                             .-|.+.+++.
T Consensus       138 ----------------------~~~---------------------------------------------~~d~~~l~~~  150 (378)
T PRK07682        138 ----------------------NEF---------------------------------------------KVQPAQIEAA  150 (378)
T ss_pred             ----------------------cCC---------------------------------------------CCCHHHHHhh
Confidence                                  000                                             0033444433


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      +    .++++++++++|+||||.+++   +++|.++|++|++++|+||+|.....+....++....+ ..+.+++++|||
T Consensus       151 ~----~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~S~S  225 (378)
T PRK07682        151 I----TAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKG-MRERTILISGFS  225 (378)
T ss_pred             c----CcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhccc-ccCCEEEEecCc
Confidence            3    346889999999999999998   89999999999999999999995544332222222222 125689999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |.++.+|   ||+++++++++.+.......  ..+.+.+.+.++..+|+.. ..++++.++.++++++++.+.|++.++.
T Consensus       226 K~~~~~GlR~G~~~~~~~~i~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~  302 (378)
T PRK07682        226 KGFAMTGWRLGFIAAPVYFSEAMLKIHQYS--MMCAPTMAQFAALEALRAG-NDDVIRMRDSYRKRRNFFVTSFNEIGLT  302 (378)
T ss_pred             ccccChhhhhhhhhcCHHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            9999768   99999999999887654322  2356777888888888643 2456778889999999999999999887


Q ss_pred             cccCCCc-EEEEEeC-CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        406 VEHTPSH-IIPIKIG-NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       406 ~~~~~~~-~~~i~l~-~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +..+.++ ++++.++ ...+..++++.+++++||.+.|+..+. ..+++++|++++  .+++++++++++|+++++++
T Consensus       303 ~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~-~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        303 CHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFG-ESGEGFIRCSYA--TSLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             cCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhC-cCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence            7667665 4445553 234578899888667899999988653 334689999998  36899999999999988764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.97  E-value=3.5e-28  Score=250.19  Aligned_cols=346  Identities=15%  Similarity=0.169  Sum_probs=241.7

Q ss_pred             CceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcc--cCcchHHHHHHHHHHhHcCCC--c-EEEEeccccccccc
Q psy16848         17 NRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNI--SGNSLFHEKLEEDVAKLHQKE--A-GLVFTSCYVANDST   91 (514)
Q Consensus        17 g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~--~-~i~~~sGt~a~~~~   91 (514)
                      +..|.|-++... -++.+.+++.+.++.+......+...  ....+..+++++.+++++|.+  + .++++|+|+++..+
T Consensus        16 ~~iyld~a~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~   94 (398)
T TIGR03392        16 GTVYLDSAATAL-KPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLV   94 (398)
T ss_pred             CeEEeeCccccC-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHH
Confidence            345666665553 35788999988887543222111111  112356788999999999963  3 45556667777777


Q ss_pred             hhhcc--ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         92 LFTLG--KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        92 l~~l~--~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      +.++.  ...+||.|++++++|.+.....                                                   
T Consensus        95 ~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~---------------------------------------------------  123 (398)
T TIGR03392        95 AQSYARPRLQPGDEIIVSEAEHHANLIPW---------------------------------------------------  123 (398)
T ss_pred             HHHhhhccCCCCCEEEECCcchhHHHHHH---------------------------------------------------
Confidence            77763  1359999999999998854211                                                   


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHL  248 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l  248 (514)
                                                                               ...+...|++++.++. .+....
T Consensus       124 ---------------------------------------------------------~~~~~~~g~~v~~v~~~~~~~~~  146 (398)
T TIGR03392       124 ---------------------------------------------------------LMVAQQTGAKVVKLPIGADLLPD  146 (398)
T ss_pred             ---------------------------------------------------------HHHHHHcCcEEEEEecCCCCCcC
Confidence                                                                     1112233444444442 122222


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      .+.+++..+++++++++++++||||.+.|+++|.++|+++|+++++|++|+.+...     + +..  ..++|++++|+|
T Consensus       147 ~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~-----~-~~~--~~~~d~~~~s~~  218 (398)
T TIGR03392       147 IRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGP-----P-DVQ--ALDIDFYAFSGH  218 (398)
T ss_pred             HHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCC-----C-Chh--hcCCCEEEEecc
Confidence            33344444557899999999999999999999999999999999999999866431     1 111  346899999999


Q ss_pred             ccccCCC-eEEEecHHHHHHHHhhcCce------------------Ee-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        329 KAFGNIG-GYIVGTKNFIDTIRSYAAGF------------------IF-TTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       329 K~lg~~G-G~l~~~~~~~~~l~~~~~~~------------------~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      |.+|+.| |+++.++++++.+.....+.                  .+ ..+.+.....++.++++.+.+.+.+++.++.
T Consensus       219 K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~  298 (398)
T TIGR03392       219 KLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWS  298 (398)
T ss_pred             cccCCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            9888878 99999998887765432110                  11 1244556778888888887666777888999


Q ss_pred             HHHHHHHHHHHHhC-CCcccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeCCC
Q psy16848        389 QDIVAYLRNELIQI-GFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPTPF  461 (514)
Q Consensus       389 ~~~~~~l~~~L~~~-g~~~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~~~  461 (514)
                      .++.+++.+.|+++ ++.+.. +..+++.+.++. ....++.+.| +++||.++++..|..+     ..++++|++++.+
T Consensus       299 ~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~-~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~  376 (398)
T TIGR03392       299 VSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAG-VHHSDLAALL-AESGIALRAGQHCAQPLMAALGVSGTLRASFAPY  376 (398)
T ss_pred             HHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCC-cCHHHHHHHH-HhCCEEEecCccchHHHHHHhCCCCEEEEEeecc
Confidence            99999999999887 776543 345577777654 3467888888 5899999988765421     1246999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                      +|++|++++++.|+++++++
T Consensus       377 ~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       377 NTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.97  E-value=4e-28  Score=249.68  Aligned_cols=337  Identities=19%  Similarity=0.170  Sum_probs=238.6

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++||.++   .++|  ||++.+++.++++++... +   .. ...+...+++++++++.+.++++|++||++|++
T Consensus        37 ~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~---~~-~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e  111 (403)
T PRK05093         37 QQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHI-S---NV-FTNEPALRLAKKLIDATFAERVFFANSGAEANE  111 (403)
T ss_pred             CCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcc-c---Cc-cCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHH
Confidence            478889999764   7776  799999999999874321 1   11 234567899999999988889999999999999


Q ss_pred             cchhhcccc-------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         90 STLFTLGKM-------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        90 ~~l~~l~~~-------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      .+++.+...       ++...|.++..+|.+...+++..+..                                      
T Consensus       112 ~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~--------------------------------------  153 (403)
T PRK05093        112 AAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQP--------------------------------------  153 (403)
T ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCCh--------------------------------------
Confidence            999754221       12334444444444443332222110                                      


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                    .+...+.....++..+++
T Consensus       154 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  171 (403)
T PRK05093        154 --------------------------------------------------------------KYSDGFGPKPADITHVPF  171 (403)
T ss_pred             --------------------------------------------------------------hhhhcCCCCCCCcEEeCC
Confidence                                                                          000011111234667788


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccCCC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERDGQ  316 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~~~  316 (514)
                      +|++.+++.+.    +++++|++++++++.|...+    +++|+++|++||+++|+||+|+ +++.|.   ++. ...+.
T Consensus       172 ~d~~~l~~~l~----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~~~  244 (403)
T PRK05093        172 NDLAAVKAVID----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD---LFAYMHYGV  244 (403)
T ss_pred             CCHHHHHHHhc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc---chhhhhcCC
Confidence            89988888774    45899999977666666544    8999999999999999999999 434332   221 12333


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                        .+|+.  ||||.+++ |   |++++++++.+.+.......  +.+.+++.++++.++|+.+..+   +.+++++++++
T Consensus       245 --~pdi~--s~sK~l~~-G~rig~vv~~~~i~~~l~~~~~~~--t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~  314 (403)
T PRK05093        245 --TPDIL--TSAKALGG-GFPIGAMLTTAEIASHFKVGTHGS--TYGGNPLACAVAEAVFDIINTP---EVLEGVKARRQ  314 (403)
T ss_pred             --CCCEE--EecccccC-CcceEEEEEcHHHHhhcCCCCCCC--CCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHH
Confidence              67876  99999985 6   99999999988886544333  4467899999999999877443   36788899999


Q ss_pred             HHHHHHHhCC--Ccc---ccCCCcEEEEEeCCCc--cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        394 YLRNELIQIG--FPV---EHTPSHIIPIKIGNPA--LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       394 ~l~~~L~~~g--~~~---~~~~~~~~~i~l~~~~--~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      ++.+.|++++  +.+   .+..+.++++.++...  ...+++..|+ ++||.+.+.       +.+++|++++..+++++
T Consensus       315 ~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~-~~Gv~v~~~-------g~~~lRl~~~~~~~~~~  386 (403)
T PRK05093        315 RFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAA-EEGVMVLVA-------GPDVLRFAPSLVIEEAD  386 (403)
T ss_pred             HHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHH-HCCeEEecC-------CCCEEEEeCCCCCCHHH
Confidence            9999998863  222   1234567778876432  4678999996 899998742       34689999998889999


Q ss_pred             HHHHHHHHHHHHHHc
Q psy16848        467 IDKFVTDLLAVWKSL  481 (514)
Q Consensus       467 id~~~~~l~~~l~~~  481 (514)
                      +++++++|+++++++
T Consensus       387 i~~~~~~l~~~l~~~  401 (403)
T PRK05093        387 IDEGLARFEKAVAKV  401 (403)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.97  E-value=3e-28  Score=249.72  Aligned_cols=334  Identities=19%  Similarity=0.203  Sum_probs=233.7

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|++++||.+   +.+++  ||++.+++.+++++.... + . .  ...+...+++++++++.+.+++++++||++|+.
T Consensus        28 ~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~-~-~-~--~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~  102 (389)
T PRK01278         28 EDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHV-S-N-L--YRIPEQERLAERLVENSFADKVFFTNSGAEAVE  102 (389)
T ss_pred             CCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCcc-c-c-c--cCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHH
Confidence            47888999966   45665  799999999999873322 1 1 1  235678899999999987788999999999999


Q ss_pred             cchhhccc--cCCCc----eE-EecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         90 STLFTLGK--MIPGL----HY-ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        90 ~~l~~l~~--~~~gd----~v-~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      .+++++..  ..+||    .| ..+..+|.....++...+..... ..                          |     
T Consensus       103 ~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~-~~--------------------------~-----  150 (389)
T PRK01278        103 CAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYL-EG--------------------------F-----  150 (389)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhc-cc--------------------------C-----
Confidence            99987632  12444    44 55555666655444433321100 00                          0     


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                          .........++.
T Consensus       151 --------------------------------------------------------------------~~~~~~~~~~~~  162 (389)
T PRK01278        151 --------------------------------------------------------------------GPLVPGFDQVPF  162 (389)
T ss_pred             --------------------------------------------------------------------CCCCCCceEeCC
Confidence                                                                                000001233456


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCc-cccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccCCC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTG-AICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERDGQ  316 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG-~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~~~  316 (514)
                      +|.+.+++.+.    +++++|++++++|++| .+++   +++|+++|++||+++|+||+|+ +|+.|.   .+. +..+.
T Consensus       163 ~d~~~l~~~l~----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~~~  235 (389)
T PRK01278        163 GDIEALKAAIT----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK---LFAHEWAGV  235 (389)
T ss_pred             CCHHHHHHhhC----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---ceeecccCC
Confidence            67777777764    3689999999999999 4445   8999999999999999999999 444332   221 23333


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                        .+|++  |++|.+++ |   |++++++++.+.+.......  +.+.+++.++++.++|+.+.++.   ..++++++.+
T Consensus       236 --~pdi~--t~sK~l~~-G~~ig~~~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~  305 (389)
T PRK01278        236 --TPDIM--AVAKGIGG-GFPLGACLATEEAAKGMTPGTHGS--TYGGNPLAMAVGNAVLDVILAPG---FLDNVQRMGL  305 (389)
T ss_pred             --CCCEE--EEehhccC-CcceEEEEEcHHHHhccCCCCCCC--CCCccHHHHHHHHHHHHHHhhhH---HHHHHHHHHH
Confidence              57876  89999985 5   89999999888776554444  44688999999999999874433   4556666666


Q ss_pred             HHHHHHHhC--CCc----cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        394 YLRNELIQI--GFP----VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       394 ~l~~~L~~~--g~~----~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      ++.+.|+++  ..+    .+.+.+.++.+++..  +..++++.|+ ++||.+.|+       +.+.+|++++..++++++
T Consensus       306 ~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~--~~~~~~~~l~-~~GV~~~p~-------~~~~lR~~p~~~~~~~~i  375 (389)
T PRK01278        306 YLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVV--PNRDLVQALR-DEGLLTVGA-------GDNVVRLLPPLIITEEEI  375 (389)
T ss_pred             HHHHHHHHHHhhCCCceeeEecccEEEEEEEec--CHHHHHHHHH-HCCeEEeec-------CCCEEEEeCCcccCHHHH
Confidence            666666553  121    223455677777643  4678999997 789998764       246899999888999999


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        468 DKFVTDLLAVWKS  480 (514)
Q Consensus       468 d~~~~~l~~~l~~  480 (514)
                      ++++++|++++++
T Consensus       376 ~~~l~~l~~~l~~  388 (389)
T PRK01278        376 DEALERLERAAES  388 (389)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>PRK12414 putative aminotransferase; Provisional

Probab=99.97  E-value=6.4e-28  Score=246.67  Aligned_cols=339  Identities=15%  Similarity=0.168  Sum_probs=237.5

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-----cEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-----AGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~i~~~sGt~a~   88 (514)
                      ++..++|+..+.  +..++.+.+++.+.+...   ...+....|..++.+++++++++++|.+     ..+++++|++++
T Consensus        27 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al  103 (384)
T PRK12414         27 AQHDALNLSQGAPNFAPDPALVEGVARAMRDG---HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL  103 (384)
T ss_pred             HhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhC---CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence            344678886533  334778888888877642   1223334567788889999998888752     356566667777


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.+++.  +||.|+++.++|......++..|.+++.++..+ +.                                 
T Consensus       104 ~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~---------------------------------  147 (384)
T PRK12414        104 YAAISALVH--PGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-ED---------------------------------  147 (384)
T ss_pred             HHHHHHhcC--CCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cc---------------------------------
Confidence            888888866  999999999999887766666666655443210 00                                 


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                 .                                             .-|.+.+
T Consensus       148 ---------------------------~---------------------------------------------~~d~~~l  155 (384)
T PRK12414        148 ---------------------------F---------------------------------------------RVNWDEV  155 (384)
T ss_pred             ---------------------------c---------------------------------------------ccCHHHH
Confidence                                       0                                             0133444


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+    +++++++++++++||||.+++   +++|.++|++||+++|+||+|....+ +....++..... ..+..+++
T Consensus       156 ~~~l----~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~~~i~~  230 (384)
T PRK12414        156 AAAI----TPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRE-LAERSVIV  230 (384)
T ss_pred             Hhhc----CcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcC-ccCcEEEE
Confidence            4333    346889999999999999988   78889999999999999999995433 222212222221 12467999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      .||||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++...|+.  .....+.++.++++++.+.+.|++
T Consensus       231 ~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~--~~~~s~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~  306 (384)
T PRK12414        231 SSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFM--VFSADTPMQHAFAEALAE--PASYLGLGAFYQRKRDLLARELAG  306 (384)
T ss_pred             ecccccccCccceEEEEecCHHHHHHHHHHHhhe--ecCCCcHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998778   99999999998887765443  235667777777777752  123345778889999999999999


Q ss_pred             CCCccccCCCcE-EEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTPSHI-IPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       402 ~g~~~~~~~~~~-~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .|+.+..+.+++ ++++++.  .....+++..+++++||.+.|+..+... .+.+++|++++.  +++++++++++|.+
T Consensus       307 ~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~--~~~~~~~~~~rl~~  383 (384)
T PRK12414        307 SRFELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK--DDATLVEGARRLCS  383 (384)
T ss_pred             CCCeecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            887777776664 4456653  2245677766656899999999865432 235799999993  68899999988864

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.97  E-value=8.2e-28  Score=247.27  Aligned_cols=340  Identities=15%  Similarity=0.157  Sum_probs=237.3

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---C-cEEEEeccc-ccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---E-AGLVFTSCY-VAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~-~~i~~~sGt-~a~   88 (514)
                      .+..++|+..++.  ..++.+.+++.+.+.... .+ ++. ..|..++.+.+.+.+.+..|.   + ..+++++|+ +++
T Consensus        30 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~-~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al  106 (399)
T PRK07681         30 AGHKMIDLSIGNPDMPPADFVREEMVHTANQKE-SY-GYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGL  106 (399)
T ss_pred             cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccc-cC-CCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHH
Confidence            3567899965543  346778888877765421 11 111 235556666666666655442   2 445566655 556


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.+++.  +||.|+++.++|......++..|.+++.++.++.+                     .|           
T Consensus       107 ~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~---------------------~~-----------  152 (399)
T PRK07681        107 VHLPMVYAN--PGDIILVPDPGYTAYETGIQMAGATSYYMPLKKEN---------------------DF-----------  152 (399)
T ss_pred             HHHHHHhCC--CCCEEEECCCCccchHHHHHhcCCEEEEEecCCCC---------------------CC-----------
Confidence            666666765  99999999999988877777777766655431000                     00           


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                               ..|++.+
T Consensus       153 -------------------------------------------------------------------------~~d~~~l  159 (399)
T PRK07681        153 -------------------------------------------------------------------------LPDLELI  159 (399)
T ss_pred             -------------------------------------------------------------------------cCCHHHH
Confidence                                                                                     0023333


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+    .++++++++++||||||.+++   +++|.++|++||+++|+||+|....... ...++..... ..+.++++
T Consensus       160 ~~~~----~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~  234 (399)
T PRK07681        160 PEEI----ADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG-AKEVGVEI  234 (399)
T ss_pred             HHhc----cccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC-CcccEEEE
Confidence            3333    345889999999999999999   7889999999999999999999544322 1112222221 22467999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +||||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++.+.++.. ..++++.++.++++++.+.+.|++
T Consensus       235 ~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~  311 (399)
T PRK07681        235 NSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNT--DYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRT  311 (399)
T ss_pred             eecccccCCccceeEEEecCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999778   99999999999887765433  2356777788888877643 245677888889999999999999


Q ss_pred             CCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       402 ~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .|+.+..+. +.++++.++...+..++++.+++++||.+.|+..+. ..+++++|++++  .+++++++++++|++
T Consensus       312 ~g~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~-~~~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        312 FGWNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFG-PHGEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             CCCcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhC-cCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            888765454 557788887666678899999755999999988643 334579999998  468999999999987

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.2e-27  Score=246.18  Aligned_cols=347  Identities=14%  Similarity=0.083  Sum_probs=242.8

Q ss_pred             eeeecccC--C-CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEecccccccc
Q psy16848         19 VTCRLSSV--Q-YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVANDS   90 (514)
Q Consensus        19 ~~~d~~~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~~   90 (514)
                      ..+||...  + +..+|.+.+++.+.+...+.  .++....|..++.+.+++++++++|.     ++.++++++++++..
T Consensus        40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~  117 (405)
T PRK06207         40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGV--QAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFL  117 (405)
T ss_pred             CceecCCcCCCCCCCCHHHHHHHHHHHhcCCC--ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence            35677532  2 22356788888887765221  22333456778888888888888773     334444445667778


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|......++..|++++.++....+ .                                  
T Consensus       118 ~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~-~----------------------------------  160 (405)
T PRK06207        118 AVAATVA--RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLS-A----------------------------------  160 (405)
T ss_pred             HHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccC-c----------------------------------
Confidence            8877766  99999999999998887777777776654321000 0                                  


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                            ..+.                                             ..|.+.+++
T Consensus       161 ----------------------~~~~---------------------------------------------~~d~~~l~~  173 (405)
T PRK06207        161 ----------------------DKRA---------------------------------------------GLDLDQLEE  173 (405)
T ss_pred             ----------------------ccCC---------------------------------------------CcCHHHHHH
Confidence                                  0000                                             013444444


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .++    ++++++++++|+||||.+++   +++|.++|++||+++|+||+|....+ +....++... ....+..++++|
T Consensus       174 ~~~----~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~-~~~~~~vi~i~S  248 (405)
T PRK06207        174 AFK----AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRAL-PIDPENVITIMG  248 (405)
T ss_pred             hhh----hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcC-CCCcCcEEEEec
Confidence            443    35789999999999999999   78899999999999999999995433 3222122211 112357799999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      |||.++.+|   ||+++++++++.+......+  +.+.+.+.+.++...++.. ..++++.++.++++++.+.+.|++. 
T Consensus       249 fSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~  325 (405)
T PRK06207        249 PSKTESLSGYRLGVAFGSPAIIDRMEKLQAIV--SLRAAGYSQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVE  325 (405)
T ss_pred             chhhccCcccceEEEEcCHHHHHHHHHHHhHh--ccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999668   99999999999888766544  3345667777777777531 1345667777888888899999877 


Q ss_pred             CCccccCC-CcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTP-SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       403 g~~~~~~~-~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++.+..+. +.+++++++. ..+..++++.|++++||.+.|+..+. ....+++|++++.  +.+++++.+++|++++++
T Consensus       326 ~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~-~~~~~~~Ris~~~--~~~~l~~al~rl~~~l~~  402 (405)
T PRK06207        326 GVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFS-PHTADSIRLNFSQ--DHAAAVAAAERIAQLIER  402 (405)
T ss_pred             CceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence            77766565 4577888875 34577899998657899999998643 2346799999984  689999999999999876


Q ss_pred             cC
Q psy16848        481 LD  482 (514)
Q Consensus       481 ~~  482 (514)
                      ++
T Consensus       403 ~~  404 (405)
T PRK06207        403 YR  404 (405)
T ss_pred             hh
Confidence            53

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.97  E-value=2.8e-28  Score=244.16  Aligned_cols=304  Identities=19%  Similarity=0.187  Sum_probs=228.7

Q ss_pred             CCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccchhhccccCC
Q psy16848         26 VQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDSTLFTLGKMIP  100 (514)
Q Consensus        26 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~l~~l~~~~~  100 (514)
                      ++||+   ||.+.++..+++++|+          |..++++++++++++++|.  +.+++++||++|+..++.++..  |
T Consensus        27 ~~ylgl~~~~~~~~~~~~~~~~~~----------g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~--~   94 (346)
T TIGR03576        27 YDLTGLAGGFKIDEEDLELLETYV----------GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP--P   94 (346)
T ss_pred             cccccCCCChhHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC--C
Confidence            46786   9999999999999974          3458999999999999998  7889999999999999999976  9


Q ss_pred             CceEEec---CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848        101 GLHYISD---AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  177 (514)
Q Consensus       101 gd~v~~~---~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
                      ||.|++.   .+.|.+...+++..|++++.+  .+.++                                          
T Consensus        95 gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~--~~l~~------------------------------------------  130 (346)
T TIGR03576        95 GRKVVHYLPEKPAHPSIPRSCKLAGAEYFES--DELSE------------------------------------------  130 (346)
T ss_pred             CCEEEECCCCCCCchhHHHHHHHcCCEEecc--CCHHH------------------------------------------
Confidence            9999853   579999988888888765322  22221                                          


Q ss_pred             ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848        178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  257 (514)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~  257 (514)
                                                                                                ++.  .
T Consensus       131 --------------------------------------------------------------------------l~~--~  134 (346)
T TIGR03576       131 --------------------------------------------------------------------------LKK--I  134 (346)
T ss_pred             --------------------------------------------------------------------------Hhh--C
Confidence                                                                                      111  1


Q ss_pred             CCceEEEEecCCCCCcccc---CHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cC
Q psy16848        258 KIPKLVAFETVHSMTGAIC---PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GN  333 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~---~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~  333 (514)
                      +++++|+++. +|++|.++   ++++|.++|+++|+++++||+|+.+..+..+.+..  .  ..+.|++++||||++ |.
T Consensus       135 ~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~--~--~~~~divv~s~SKalaG~  209 (346)
T TIGR03576       135 DGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPA--L--DLGADLVVTSTDKLMDGP  209 (346)
T ss_pred             cCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCH--H--HcCCcEEEeccchhcccc
Confidence            2356677654 68899985   48999999999999999999999766443222111  1  124689999999988 56


Q ss_pred             CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE
Q psy16848        334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI  413 (514)
Q Consensus       334 ~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  413 (514)
                      .|||+++++++++.+.+....+.+  +.+++.++++.++|+...   .+..++.++++.+.+.+.+++  +.+.++.+++
T Consensus       210 r~G~v~~~~~li~~l~~~~~~~~~--s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~f  282 (346)
T TIGR03576       210 RGGLLAGRKELVDKIKSVGEQFGL--EAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDK--LNVERTPTGF  282 (346)
T ss_pred             ceEEEEeCHHHHHHHHHhhcCccc--CccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCeE
Confidence            679999999999999988877755  467778888899987542   245678888888888888875  4444556667


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHH---HHHHHHHHHHHHH
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE---MIDKFVTDLLAVW  478 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e---~id~~~~~l~~~l  478 (514)
                      +++.++.. +..+++..+++++||.++|+..+  +..++++|++++.  .++   +++.++++|++.+
T Consensus       283 ~~~~~~~~-~~~~~~~~ll~~~gV~v~~~~~f--~~~~~~vRis~~~--~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       283 VIKGVEEE-KLIEIGLDLLRNYGIITITAVGM--PGASKTLRFDLAA--KDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             EEEeCCCC-CHHHHHHHHHHhCCEEEeCCccc--CCCCCeEEEEEec--ChHHhcCHHHHHHHHHhcc
Confidence            77777542 24466667777999999987653  2236799999982  333   7999999998753

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.97  E-value=6.2e-28  Score=247.08  Aligned_cols=341  Identities=17%  Similarity=0.112  Sum_probs=243.4

Q ss_pred             eeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccch
Q psy16848         19 VTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l   92 (514)
                      ..+++..++  +..++.+.+++.+.+....   ..+....|..++.+++.+++.+.+|    .+..++++++++++..++
T Consensus        25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~---~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~  101 (382)
T PRK06108         25 GVLPLWFGESDLPTPDFIRDAAAAALADGE---TFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA  101 (382)
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence            467775433  3346788888888776521   1222334667777888888777766    234555566677888888


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++..  +||.|+++.+.|......++..|.+++.++.++.+                                      
T Consensus       102 ~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------------------------------------  141 (382)
T PRK06108        102 QALVG--PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGG--------------------------------------  141 (382)
T ss_pred             HHhcC--CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCC--------------------------------------
Confidence            77766  99999999999988877777777766655431000                                      


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                           .+.                                             ..|.+.+++.+
T Consensus       142 ---------------------~~~---------------------------------------------~~d~~~l~~~~  155 (382)
T PRK06108        142 ---------------------GGW---------------------------------------------TLDLDRLLAAI  155 (382)
T ss_pred             ---------------------CCc---------------------------------------------cCCHHHHHHhc
Confidence                                 000                                             01334444333


Q ss_pred             hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCCCccCceEEEcCC
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~~~~~~di~~~S~  327 (514)
                          +++++++++++|+||||.+++   +++|.++|+++|+++|+||+|.....+.  ....+..... ..+.+++++||
T Consensus       156 ----~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~  230 (382)
T PRK06108        156 ----TPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE-PDDRIIFVNSF  230 (382)
T ss_pred             ----CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC-CcCCEEEEeec
Confidence                346889999999999999998   6889999999999999999999554431  1111111111 12568999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      ||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++..+++.. ...+++.+++++++++++.+.|++. +
T Consensus       231 SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~  307 (382)
T PRK06108        231 SKNWAMTGWRLGWLVAPPALGQVLEKLIEYN--TSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPG  307 (382)
T ss_pred             hhhccCcccceeeeeCCHHHHHHHHHHHHhc--ccCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998767   99999999998887654322  2356778888888888643 3456778889999999999999887 7


Q ss_pred             CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       404 ~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.+..+.++ ++++.++...+..++++.|++++||.+.++..+. +.+.+++|++++.  +++++++++++|+++++
T Consensus       308 ~~~~~p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~-~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        308 VEVAKPDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFG-PGGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             CcccCCCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            777766655 5577887655677899998767899999988643 3456899999995  89999999999998764

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.97  E-value=7.5e-28  Score=247.95  Aligned_cols=345  Identities=14%  Similarity=0.181  Sum_probs=242.3

Q ss_pred             ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc--ccCcchHHHHHHHHHHhHcCC-C-c-EEEEeccccccccch
Q psy16848         18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN--ISGNSLFHEKLEEDVAKLHQK-E-A-GLVFTSCYVANDSTL   92 (514)
Q Consensus        18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~-~-~-~i~~~sGt~a~~~~l   92 (514)
                      ..|.|-++... .++.+.+++.+.++.+.........  .....+..+++++.+++++|. + + .++++|+|+++..++
T Consensus        20 ~~yld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~   98 (401)
T PRK10874         20 GVYLDSAATAL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVA   98 (401)
T ss_pred             eEEEeCCcccC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHH
Confidence            45666655543 3568889998888764322221111  112356678899999999997 3 3 444555677777777


Q ss_pred             hhcc--ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         93 FTLG--KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        93 ~~l~--~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      .++.  .+.+||+|++.+++|.+....+.                                                   
T Consensus        99 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~---------------------------------------------------  127 (401)
T PRK10874         99 QSYARPRLQPGDEIIVSEAEHHANLVPWL---------------------------------------------------  127 (401)
T ss_pred             HHhhhccCCCcCEEEECCcchHHHHHHHH---------------------------------------------------
Confidence            7763  13599999999999988642211                                                   


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLT  249 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~  249 (514)
                                                                               ......|++++.++. .+.....
T Consensus       128 ---------------------------------------------------------~~~~~~g~~v~~v~~~~~~~~d~  150 (401)
T PRK10874        128 ---------------------------------------------------------MVAQQTGAKVVKLPLGADRLPDV  150 (401)
T ss_pred             ---------------------------------------------------------HHHHHhCCEEEEEecCCCCcCCH
Confidence                                                                     111223444444441 1222223


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      +.+++..+++++++++++++||||...|+++|.++|+++|+++++|++|+.+...     + +..  ..++|++++|+||
T Consensus       151 ~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~-----~-~~~--~~~~d~~~~s~~K  222 (401)
T PRK10874        151 DLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFP-----A-DVQ--ALDIDFYAFSGHK  222 (401)
T ss_pred             HHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccccc-----C-Cch--hcCCCEEEEeccc
Confidence            3344444567899999999999999999999999999999999999999866541     1 122  3368999999999


Q ss_pred             cccCCC-eEEEecHHHHHHHHhhcCc------------------eEec-cCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        330 AFGNIG-GYIVGTKNFIDTIRSYAAG------------------FIFT-TSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       330 ~lg~~G-G~l~~~~~~~~~l~~~~~~------------------~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      .+|+.| |+++.++++++.+.....+                  ..+. .+.+.....++.++++.+.+.+..++.++.+
T Consensus       223 ~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~  302 (401)
T PRK10874        223 LYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSR  302 (401)
T ss_pred             ccCCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            889878 9999999988876533211                  1111 1345567788888888776667777888899


Q ss_pred             HHHHHHHHHHHhC-CCcccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeCCCC
Q psy16848        390 DIVAYLRNELIQI-GFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPTPFH  462 (514)
Q Consensus       390 ~~~~~l~~~L~~~-g~~~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~~~~  462 (514)
                      ++.+++.+.|+++ |+.+.. +..+++.+.++. ....++.+.| .++||.++++..|..+     ...+++|++++.++
T Consensus       303 ~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~-~~~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~n  380 (401)
T PRK10874        303 SLATLAEDALAKLPGFRSFRCQDSSLLAFDFAG-VHHSDLVTLL-AEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYN  380 (401)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECC-cCHHHHHHHH-HHCCcEEeccccchHHHHHHhCCCCEEEEEecccC
Confidence            9999999999987 776654 345577777654 3457888888 5899999988765421     12468999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      |++|+++++++|+++++.+
T Consensus       381 t~edid~ll~al~~~~~~~  399 (401)
T PRK10874        381 TQSDVDALVNAVDRALELL  399 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988764

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.97  E-value=4.7e-28  Score=249.11  Aligned_cols=338  Identities=22%  Similarity=0.243  Sum_probs=246.7

Q ss_pred             cCCceeeecccCCCC------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQYK------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~   88 (514)
                      .+|++++||.++ |+      .||++.+++.+++++++....   ..  ..+...+++++++++++.+++++++||++||
T Consensus        34 ~~g~~~lD~~s~-~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~---~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~  107 (401)
T TIGR01885        34 VEGKRYLDFLSA-YSAVNQGHCHPKIVKALTEQAQKLTLSSR---AF--YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAV  107 (401)
T ss_pred             CCCCEEEEcccC-HhhccCCCCCHHHHHHHHHHHHhcccccc---cc--CCHHHHHHHHHHHhhcCCCEEEEeCccHHHH
Confidence            478889999774 55      289999999999998653221   11  3577899999999999988999999999999


Q ss_pred             ccchhhcccc--------CCCceEEecCcc-chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         89 DSTLFTLGKM--------IPGLHYISDAGN-HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        89 ~~~l~~l~~~--------~~gd~v~~~~~~-h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      +.++..+...        ...+.|+..... |.+++.++...+........                .            
T Consensus       108 e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~----------------~------------  159 (401)
T TIGR01885       108 ETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNF----------------G------------  159 (401)
T ss_pred             HHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccccc----------------C------------
Confidence            9999875321        134566666555 65677776654421100000                0            


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                                                              ..-..+..
T Consensus       160 ------------------------------------------------------------------------~~~~~~~~  167 (401)
T TIGR01885       160 ------------------------------------------------------------------------PYVPGFKK  167 (401)
T ss_pred             ------------------------------------------------------------------------CCCCCceE
Confidence                                                                                    00012355


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccC
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERD  314 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~  314 (514)
                      ++++|.+.+++.+++.. +++++|+++++++++|...|    +++|+++|++||+++|+||+|+ | +|+.|.++. +..
T Consensus       168 ~~~~d~~~le~~l~~~~-~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g-~g~~G~~~~~~~~  244 (401)
T TIGR01885       168 IPYNNLEALEEALEDHG-PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-G-LGRTGKLLCVDHE  244 (401)
T ss_pred             eCCCCHHHHHHHHHhcC-CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchhhHHhhc
Confidence            66778888888886543 56789999999999999998    8999999999999999999997 3 233333321 223


Q ss_pred             CCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      +.  .+|++  +++|.+++.+   |++++++++++.+.......  +.+.+++.++++.++|+.+.++.   +.++.+++
T Consensus       245 ~~--~~di~--~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~--t~~~~p~~~~aa~a~L~~i~~~~---l~~~~~~~  315 (401)
T TIGR01885       245 NV--KPDIV--LLGKALSGGVYPVSAVLADDDVMLTIKPGEHGS--TYGGNPLACAVAVAALEVLEEEK---LAENAEKL  315 (401)
T ss_pred             CC--CCCEE--EeeccccCCCCCcEEEEEcHHHHhhccCCCCCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHH
Confidence            33  67888  6789997633   77889999888776533332  44668999999999999886544   56778888


Q ss_pred             HHHHHHHHHhCCCccc---cCCCcEEEEEeCCCc---cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHH
Q psy16848        392 VAYLRNELIQIGFPVE---HTPSHIIPIKIGNPA---LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE  465 (514)
Q Consensus       392 ~~~l~~~L~~~g~~~~---~~~~~~~~i~l~~~~---~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e  465 (514)
                      .+++.+.|++++.+++   .+.+.++.+.++...   ...++.+.|. ++||.+.+.       +.+.+|++++..++++
T Consensus       316 ~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~-------~~~~lRi~p~l~~t~~  387 (401)
T TIGR01885       316 GEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLK-EKGLLAKPT-------HGNIIRLAPPLVITEE  387 (401)
T ss_pred             HHHHHHHHHhccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHH-hCCEEEEec-------CCCEEEEeCCccCCHH
Confidence            9999999998854432   346777777776532   5678999996 899999743       2468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        466 MIDKFVTDLLAVW  478 (514)
Q Consensus       466 ~id~~~~~l~~~l  478 (514)
                      ++++++++|++++
T Consensus       388 ~i~~~l~~l~~~l  400 (401)
T TIGR01885       388 QLDEGLEIIKKVI  400 (401)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.97  E-value=8.7e-28  Score=249.19  Aligned_cols=344  Identities=17%  Similarity=0.139  Sum_probs=251.4

Q ss_pred             ceeeecccCC----CCCChhHHHHHHHHHHHhCCC-CCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecccc-cc
Q psy16848         18 RVTCRLSSVQ----YKVPKGGRKCLGEALEKFGTG-AGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYV-AN   88 (514)
Q Consensus        18 ~~~~d~~~~~----~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~-a~   88 (514)
                      ...+||....    ++....+.+++.+.++..... ...+....|..++.+.+.+++....|.   +.-|++|+|++ |+
T Consensus        89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al  168 (459)
T COG1167          89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL  168 (459)
T ss_pred             CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence            4567885443    334567788887877765433 222233345666666666666644442   33577777776 46


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .+++..+..  |||+|++++++|..+...++..|.+++.++.++                                    
T Consensus       169 ~l~~~~l~~--pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~------------------------------------  210 (459)
T COG1167         169 DLLLRLLLD--PGDTVLVEDPTYPGALQALEALGARVIPVPVDE------------------------------------  210 (459)
T ss_pred             HHHHHHhCC--CCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC------------------------------------
Confidence            666666665  999999999999999999999999888766531                                    


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                 .|                                             -|.+.+
T Consensus       211 ---------------------------~G---------------------------------------------~~~e~l  218 (459)
T COG1167         211 ---------------------------DG---------------------------------------------IDPEAL  218 (459)
T ss_pred             ---------------------------CC---------------------------------------------CCHHHH
Confidence                                       00                                             033444


Q ss_pred             HHHHhhccCCCce-EEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEE
Q psy16848        249 TQVLENMDVKIPK-LVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       249 ~~~l~~~~~~~~~-~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~  323 (514)
                      ++.+++.   ++| ++++++.|||||.+++   -++|.++|++||+++|+||+|+...+. .+..++...+  ..+.+++
T Consensus       219 e~~~~~~---~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld--~~~rViy  293 (459)
T COG1167         219 EEALAQW---KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALD--APGRVIY  293 (459)
T ss_pred             HHHHhhc---CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhC--CCCCEEE
Confidence            4444332   234 4667789999999999   499999999999999999999955543 3332233222  2488999


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI-LSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      ++||||.+++ |   ||+++++++++.+.......  +...+.+.+.++...+.. .-..++.++++.++++++.+.+.|
T Consensus       294 ~gSFSK~l~P-glRlG~vv~p~~~~~~~~~~k~~~--~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L  370 (459)
T COG1167         294 LGSFSKTLAP-GLRLGYVVAPPELIEKLLRLKQAA--DLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEAL  370 (459)
T ss_pred             Eeeehhhccc-ccceeeeeCCHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998 5   99999999999988776665  446777777777777762 125678899999999999999999


Q ss_pred             HhC---CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEec-ccCCCCCC-CCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848        400 IQI---GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQP-INYPTVPV-GEEKIRLAPTPFHTREMIDKFVTD  473 (514)
Q Consensus       400 ~~~---g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~-~~~~~~~~-~~~~iRl~~~~~~t~e~id~~~~~  473 (514)
                      ++.   ...+..+. |.++|+++++..+..++.+.++ ++|+.+.+ +..+.... ..+++|++++ ..+++++++.++.
T Consensus       371 ~~~~~~~~~~~~p~gG~flwl~l~~~~~~~~l~~~a~-~~gv~i~~~g~~f~~~~~~~~~~Rl~~s-~~~~e~i~~gi~~  448 (459)
T COG1167         371 AEYLPELATWTRPEGGLFLWLELPEGIDARELLAAAL-EKGVVVTPLGSAFSADGDPRNGLRLSFS-SPSEEEIEEGIKR  448 (459)
T ss_pred             HHhCCCCeeeecCCceEEEEEEcCCCCCHHHHHHHHH-HCCCEEEcCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHH
Confidence            997   24445555 4588899999888899999996 99999998 77544433 4679999998 5679999999999


Q ss_pred             HHHHHHHc
Q psy16848        474 LLAVWKSL  481 (514)
Q Consensus       474 l~~~l~~~  481 (514)
                      |.+++++.
T Consensus       449 l~~~~~~~  456 (459)
T COG1167         449 LAALLREA  456 (459)
T ss_pred             HHHHHHHH
Confidence            99988764

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.97  E-value=9.4e-28  Score=246.07  Aligned_cols=342  Identities=17%  Similarity=0.161  Sum_probs=231.8

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---Cc-EEEEeccc-ccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EA-GLVFTSCY-VAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~-~i~~~sGt-~a~   88 (514)
                      .|..++|+..++  +..++.+.+++.+.+....  ..++....|..++.+++.+++.+..|.   +. .+++|+|+ +++
T Consensus        28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al  105 (388)
T PRK07366         28 AGKELIDLSLGSSDLPAPAHALEAIAQSLHDPS--THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGT  105 (388)
T ss_pred             cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcc--cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHH
Confidence            567788995433  3347788888888765321  112222345555666666666554442   22 46666665 466


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.+++.  +||.|+++.++|......++..|.+++.++.....                     .|           
T Consensus       106 ~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~---------------------~~-----------  151 (388)
T PRK07366        106 AHLPLAVLN--PGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAEN---------------------DF-----------  151 (388)
T ss_pred             HHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCcc---------------------CC-----------
Confidence            777777766  99999999999988887777777776654331000                     00           


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                               ..|++.+
T Consensus       152 -------------------------------------------------------------------------~~d~~~l  158 (388)
T PRK07366        152 -------------------------------------------------------------------------LPVFADI  158 (388)
T ss_pred             -------------------------------------------------------------------------CCCHHHH
Confidence                                                                                     0022233


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-C-CCCccccCCCccCceEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-H-GAGIGERDGQLHNMDII  323 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~-~~~~~~~~~~~~~~di~  323 (514)
                      ++.+    .++++++++++||||||.+++   +++|.++|++|++++|+||+|....... . ..++..... .....++
T Consensus       159 ~~~~----~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~-~~~~vi~  233 (388)
T PRK07366        159 PTEV----LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP-EKSVSIE  233 (388)
T ss_pred             HHhh----cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCC-CcccEEE
Confidence            2222    235789999999999999999   6888889999999999999999544322 1 112222111 1235688


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++||||.+|.+|   ||+++++++++.+......+.  .+.+...+.++.+++.. ...++++.++.++++++.+.+.|+
T Consensus       234 ~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~~~--~~~~~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~  310 (388)
T PRK07366        234 FFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAVVD--FNQYRGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALH  310 (388)
T ss_pred             EeecccccCCcchhheehcCCHHHHHHHHHHHhhcc--cCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998778   999999999998887665442  23333334444555532 245677889999999999999999


Q ss_pred             hCCCccccC-CCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHT-PSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       401 ~~g~~~~~~-~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.++.+..+ .+.++++.++..  .+..++++.+++++||.+.|+..+. ..+.+++|++++  .+++++++++++|+++
T Consensus       311 ~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-~~~~~~iRi~~~--~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        311 QIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFG-KSGEGYVRFALV--HDPDILEEAVERIAAF  387 (388)
T ss_pred             HCCCcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhC-cCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            888765544 455778888753  2367788888667899999998643 233579999998  4689999999999875

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.97  E-value=5.4e-28  Score=248.56  Aligned_cols=338  Identities=19%  Similarity=0.178  Sum_probs=243.1

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++||.+   +.+++  ||++.+++.+++++.... + ..   ...+...+++++++++++.++++|++||++|++
T Consensus        36 ~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~-~~---~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e  110 (406)
T PRK12381         36 QQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHT-G-NG---YTNEPVLRLAKKLIDATFADRVFFCNSGAEANE  110 (406)
T ss_pred             CCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccc-c-Cc---cCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHH
Confidence            36778888865   46776  799999999999874322 1 11   124667899999999988888999999999999


Q ss_pred             cchhhcccc-------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         90 STLFTLGKM-------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        90 ~~l~~l~~~-------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      .+++.....       ++...|..+..+|.....+++..+.+.... .                          |     
T Consensus       111 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~-~--------------------------~-----  158 (406)
T PRK12381        111 AALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ-D--------------------------F-----  158 (406)
T ss_pred             HHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCccccc-C--------------------------C-----
Confidence            999875321       234566677888888775555444221100 0                          0     


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                          ...-..+..+++
T Consensus       159 --------------------------------------------------------------------~~~~~~~~~~~~  170 (406)
T PRK12381        159 --------------------------------------------------------------------APLPPDIRHAAY  170 (406)
T ss_pred             --------------------------------------------------------------------CCCCCCeeEeCC
Confidence                                                                                000012345667


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCcccc-C---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccCCC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC-P---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERDGQ  316 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~-~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~~~  316 (514)
                      +|++.+++.+.    +++++|++++.+...|... |   +++|+++|++||+++|+||+|+ +|+.|.   .+. ...++
T Consensus       171 ~d~~~l~~~l~----~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~---~~~~~~~~v  243 (406)
T PRK12381        171 NDLNSASALID----DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE---LYAYMHYGV  243 (406)
T ss_pred             CCHHHHHHhcc----CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc---hhhhHhhCC
Confidence            78888877774    4688999987766556544 2   8999999999999999999997 444432   221 23333


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                        .+|++  |++|++++ |   |++++++++++.+.......  +.+.+++.++++.++|+.+.++   +++++++++.+
T Consensus       244 --~pDi~--t~sK~l~g-G~~ig~~~~~~~~~~~~~~~~~~~--t~~~~pl~~aaa~a~l~~l~~~---~~~~~~~~~~~  313 (406)
T PRK12381        244 --TPDVL--TTAKALGG-GFPIGAMLTTEKCASVMTVGTHGT--TYGGNPLASAVAGKVLELINTP---EMLNGVKQRHD  313 (406)
T ss_pred             --CCCEE--EehhhhhC-CCceEEEEEcHHHHhhcCCCCCCC--CCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHH
Confidence              68886  99999985 6   88999999998886544333  4478999999999999987543   47888999999


Q ss_pred             HHHHHHHhCC--Ccc---ccCCCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        394 YLRNELIQIG--FPV---EHTPSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       394 ~l~~~L~~~g--~~~---~~~~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      ++.+.|++++  +.+   +...+.++.+.+++.  .....+.+.++ ++||.+.+.       +.+.+|++++..+|+++
T Consensus       314 ~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~-~~Gv~v~~~-------g~~~lRl~p~~~~t~~~  385 (406)
T PRK12381        314 WFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAA-KAGVMVLIA-------GPNVVRFAPALNISEEE  385 (406)
T ss_pred             HHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHH-HCCcEEeeC-------CCCEEEEeCCccCCHHH
Confidence            9999998863  332   223456778877653  24567888885 999998632       23589999999899999


Q ss_pred             HHHHHHHHHHHHHHcC
Q psy16848        467 IDKFVTDLLAVWKSLD  482 (514)
Q Consensus       467 id~~~~~l~~~l~~~~  482 (514)
                      +++++++|+++++++.
T Consensus       386 i~~~~~~l~~~l~~~~  401 (406)
T PRK12381        386 ITTGLDRFARACERFV  401 (406)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.97  E-value=1.2e-27  Score=244.81  Aligned_cols=342  Identities=18%  Similarity=0.162  Sum_probs=238.4

Q ss_pred             cCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecc-ccc
Q psy16848         15 KSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSC-YVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sG-t~a   87 (514)
                      ..|...+|+..++..  ..+.+.+++.+.+...  ....+....|..++.+++++.+.+.+|.    +..+++++| +++
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~  103 (383)
T TIGR03540        26 AEGVDVISLGIGDPDLPTPKHIVEALCKAAENP--ENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG  103 (383)
T ss_pred             hcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCC--CCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence            356778999755432  3567888888776531  1122223345556666666666655443    224556555 566


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++..+..  +||.|+++.++|......++..|.+++.++..+.+                                 
T Consensus       104 l~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~---------------------------------  148 (383)
T TIGR03540       104 IAHIPLAFVN--PGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEEN---------------------------------  148 (383)
T ss_pred             HHHHHHHhCC--CCCEEEEeCCCCcchHHHHHhcCCEEEEEecCccc---------------------------------
Confidence            7777777765  99999999999988877777777776655431000                                 


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                 |.                                             ..|++.
T Consensus       149 ---------------------------g~---------------------------------------------~~d~~~  156 (383)
T TIGR03540       149 ---------------------------GF---------------------------------------------LPDFDA  156 (383)
T ss_pred             ---------------------------CC---------------------------------------------ccCHHH
Confidence                                       00                                             003333


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+    .++++++++++|+||||.+++   +++|.++|++||+++|+||+|....... ...++..... ..+.+++
T Consensus       157 l~~~~----~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~-~~~~~i~  231 (383)
T TIGR03540       157 IPEDI----AKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDG-AKDVGIE  231 (383)
T ss_pred             HHhhc----cccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCC-cccCEEE
Confidence            33333    346889999999999999999   7999999999999999999998443322 2222222221 1246788


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++||||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++.++++.. ..++++.++.++++++.+.+.|+
T Consensus       232 ~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~  308 (383)
T TIGR03540       232 FHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNV--DSGVFQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALK  308 (383)
T ss_pred             EEecccccCCccceeeEEeCCHHHHHHHHHHHHhc--ccCCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998778   99999999998887655433  2345667777777777643 45667788899999999999999


Q ss_pred             hCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       401 ~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.++.+..+.++ ++++++++..+..++++.+++++||.+.++..+. ..+++++|++++  .+++++++++++|++
T Consensus       309 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~-~~~~~~~Ris~~--~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       309 KIGIDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFG-EYGEGYIRISLT--VPDERLEEAVARIKK  382 (383)
T ss_pred             hCCCEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhC-ccCCCeEEEEec--CCHHHHHHHHHHHhh
Confidence            998877766655 5678887666678899998667899999988653 334679999997  567888888877764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.97  E-value=1.5e-27  Score=244.33  Aligned_cols=341  Identities=16%  Similarity=0.157  Sum_probs=234.8

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccc-ccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCY-VAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt-~a~   88 (514)
                      .|...+|+..++  +...+.+.+++.+.+....  ...+....|..++.+++.+.+.+.+|.    ++.+++++|+ +++
T Consensus        29 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i  106 (385)
T PRK09276         29 RGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPE--NHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI  106 (385)
T ss_pred             cCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence            456678886544  3346788888888776421  112222334455666666666555452    2335565554 667


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.+++.  +||.|+++.++|......++..|.+++.++..+.+                                  
T Consensus       107 ~~~~~~~~~--~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~----------------------------------  150 (385)
T PRK09276        107 AHIPLAFVN--PGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEEN----------------------------------  150 (385)
T ss_pred             HHHHHHhCC--CCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCC----------------------------------
Confidence            777777765  99999999999988777777667666654321000                                  


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                |.                                             ..|.+.+
T Consensus       151 --------------------------g~---------------------------------------------~~d~~~l  159 (385)
T PRK09276        151 --------------------------GF---------------------------------------------LPDLDAI  159 (385)
T ss_pred             --------------------------CC---------------------------------------------cCCHHHH
Confidence                                      00                                             0022333


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+    .++++++++++|+||||.+++   +++|.++|++|++++|+||+|.....+ ....++..... ..+.++++
T Consensus       160 ~~~~----~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~  234 (385)
T PRK09276        160 PEDV----AKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPG-AKDVGIEF  234 (385)
T ss_pred             HHhc----cccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCC-CcCCEEEE
Confidence            3322    346889999999999999999   689999999999999999999854332 12212222211 12467889


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +||||.+|.+|   ||+++++++++.+.......  +.+.+.+.+.++..+++.. ..++++.++.++++++++.+.|++
T Consensus       235 ~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~  311 (385)
T PRK09276        235 HSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNV--DSGVFQAIQEAGIAALNGP-QEVVEELRKIYQERRDILVEGLRK  311 (385)
T ss_pred             ecchhhcCCcchhheeeeCCHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998878   99999999999887765433  3345666777777777532 356677888999999999999999


Q ss_pred             CCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       402 ~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .++.+..+.++ ++++.+++..+..++++.|++++||.+.++..+. ..+++++|++++  .+++++.+++++|.+
T Consensus       312 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~-~~~~~~~Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        312 LGLEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFG-EYGEGYFRIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             CCCcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhC-CCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence            88877666655 4678887666678899998756899999988653 334579999998  467788888877754

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.97  E-value=6.9e-28  Score=248.16  Aligned_cols=334  Identities=17%  Similarity=0.219  Sum_probs=237.6

Q ss_pred             CCceeeecccCCCC------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQYK------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      +|++++|+.++ |.      +||++.+++.+++++++....   .+  ..+...+++++++++++.+++++++|||+|++
T Consensus        39 ~g~~~lD~~~~-~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~---~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e  112 (401)
T PRK00854         39 DGNRYLDCLSA-YSAVNQGHCHPKILAAMVEQAGRLTLTSR---AF--RNDQLAPLYEELAALTGSHKVLPMNSGAEAVE  112 (401)
T ss_pred             CCCEEEEcCcc-hhhccCCCCCHHHHHHHHHHHhhcccccc---cc--CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHH
Confidence            67778887543 33      289999999999998764322   11  13678899999999999999999999999999


Q ss_pred             cchhhcccc---------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         90 STLFTLGKM---------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        90 ~~l~~l~~~---------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      .+++.+...         ++.+.|..+...|.++..++...+....                                  
T Consensus       113 ~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~----------------------------------  158 (401)
T PRK00854        113 TAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDA----------------------------------  158 (401)
T ss_pred             HHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccc----------------------------------
Confidence            999887421         1123455555555554433221110000                                  


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                        ...+......+..+
T Consensus       159 ------------------------------------------------------------------~~~~~~~~~~~~~~  172 (401)
T PRK00854        159 ------------------------------------------------------------------RGGFGPFTPGFRVV  172 (401)
T ss_pred             ------------------------------------------------------------------cccCCCCCCCeEEe
Confidence                                                                              00000112345667


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERD  314 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~  314 (514)
                      +++|.+.+++.+.    +++++|++++++||+|.+.|    +++|+++|++||+++|+||+|+ +|+.|.   ++. ...
T Consensus       173 ~~~d~~~le~~i~----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~---~~~~~~~  245 (401)
T PRK00854        173 PFGDAEALEAAIT----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK---LLAEEHE  245 (401)
T ss_pred             CCCCHHHHHHHhC----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch---HhHHhhc
Confidence            7788888887764    46899999999999999997    9999999999999999999998 554432   111 123


Q ss_pred             CCccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      +.  .+|+++  ++|+++..   .|++++++++++.+.......  +.+.++..++++.++|+.+.++.   ..++++++
T Consensus       246 g~--~~D~~~--~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~--t~~~~~~~~aa~~a~L~~l~~~~---~~~~~~~~  316 (401)
T PRK00854        246 GI--EADVTL--IGKALSGGFYPVSAVLSNSEVLGVLKPGQHGS--TFGGNPLACAVARAALKVLTEEG---MIENAAEM  316 (401)
T ss_pred             CC--CCCEEE--ecccccCCccCeEEEEEcHHHHhcccCCCCCC--CCCcCHHHHHHHHHHHHHHHHcC---HHHHHHHH
Confidence            33  568874  57999652   288899999988776543333  33578999999999999875433   67888899


Q ss_pred             HHHHHHHHHhCCCcc---ccCCCcEEEEEe-CCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        392 VAYLRNELIQIGFPV---EHTPSHIIPIKI-GNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       392 ~~~l~~~L~~~g~~~---~~~~~~~~~i~l-~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      .+++.+.|++++...   ..+.+.++.+.+ ++.....++++.|+ ++||.+.+       .+.+.+|++++..++++++
T Consensus       317 ~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~-~~GV~v~~-------~~~~~lR~~p~~~~t~e~i  388 (401)
T PRK00854        317 GAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAGGARQYCEALK-ERGLLAKD-------THDHTIRLAPPLVITREQV  388 (401)
T ss_pred             HHHHHHHHHhhccCceEEEeccceEEEEEEecCchhHHHHHHHHH-HCCeEEec-------CCCCEEEEeCCcccCHHHH
Confidence            999999998875432   234566666655 33335678999996 88999863       1246899999989999999


Q ss_pred             HHHHHHHHHHHH
Q psy16848        468 DKFVTDLLAVWK  479 (514)
Q Consensus       468 d~~~~~l~~~l~  479 (514)
                      ++++++|++++.
T Consensus       389 ~~~i~~l~~~l~  400 (401)
T PRK00854        389 DWALEQIAKVLA  400 (401)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998763

>PRK08960 hypothetical protein; Provisional

Probab=99.97  E-value=1.9e-27  Score=243.72  Aligned_cols=342  Identities=15%  Similarity=0.067  Sum_probs=233.4

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~   89 (514)
                      .+..+++++.+..  ..++.+.+++.+.+.....   .+....|..++.+.+.+.+.+.+|    .++.++++++++++.
T Consensus        30 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~  106 (387)
T PRK08960         30 AGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHT---RYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALL  106 (387)
T ss_pred             cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCC---ccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHH
Confidence            4556778765443  3467889988888764111   122233444555555555544333    234455555667777


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|++++++|......++..|.+++.++... +                    +.|            
T Consensus       107 ~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~--------------------~~~------------  151 (387)
T PRK08960        107 LASSLLVD--PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGP-D--------------------SRY------------  151 (387)
T ss_pred             HHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCc-c--------------------cCC------------
Confidence            77777765  999999999999988877766666554432210 0                    000            


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              ..|.+.++
T Consensus       152 ------------------------------------------------------------------------~~d~~~l~  159 (387)
T PRK08960        152 ------------------------------------------------------------------------QLTPALVE  159 (387)
T ss_pred             ------------------------------------------------------------------------CCCHHHHH
Confidence                                                                                    01233333


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +.    .+++++++++++|+||||.+++   +++|+++|++||+++|+||+|.....+....++.   .. .+..++++|
T Consensus       160 ~~----~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~---~~-~~~vi~~~S  231 (387)
T PRK08960        160 RH----WNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVL---EV-DDDAFVLNS  231 (387)
T ss_pred             HH----hCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChh---hc-cCCEEEEee
Confidence            33    3455788999999999999999   5778888999999999999998433332221221   21 245789999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      |||.+|.+|   ||+++++++++.+......+  +.+.+.+.+.++...++.....++.+.++.++++++.+.+.|++.+
T Consensus       232 ~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~  309 (387)
T PRK08960        232 FSKYFGMTGWRLGWLVAPPAAVPELEKLAQNL--YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELG  309 (387)
T ss_pred             cccccCCcccEEEEEEcCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998778   99999999999887765544  3356778887777777532235667788889999999999999887


Q ss_pred             Ccc-ccCCC-cEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        404 FPV-EHTPS-HIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       404 ~~~-~~~~~-~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.+ ..+.+ .++++++++ ..+..++++.|++++||.+.|+..+......+++|++++.  +.+++..++++|+++++
T Consensus       310 ~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        310 FGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGLR  386 (387)
T ss_pred             CcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            764 23444 466777764 2456788888766789999999875543345799999994  67788888888877654

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.7e-27  Score=243.94  Aligned_cols=342  Identities=16%  Similarity=0.171  Sum_probs=240.3

Q ss_pred             eeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccc-cccccc
Q psy16848         19 VTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCY-VANDST   91 (514)
Q Consensus        19 ~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt-~a~~~~   91 (514)
                      ..+|++.  .++..++.+.+++.+.+....  ...+....|..++.+++++.+++.+|.    +..+++++|+ +++..+
T Consensus        28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~--~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~  105 (389)
T PRK05957         28 GTISLGQGVVSYPPPPEAIEALNNFLANPE--NHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA  105 (389)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence            3567754  334456788888888776422  223344557788899999999998874    3456666665 566666


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.+++.  +||.|+++.+.|......++..|.+++.++.++                                       
T Consensus       106 ~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~---------------------------------------  144 (389)
T PRK05957        106 ILAITD--PGDEIILNTPYYFNHEMAITMAGCQPILVPTDD---------------------------------------  144 (389)
T ss_pred             HHHhcC--CCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCC---------------------------------------
Confidence            666655  999999999888776655555555544332210                                       


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                             +.                                             .-|.+.+++.
T Consensus       145 -----------------------~~---------------------------------------------~~d~~~l~~~  156 (389)
T PRK05957        145 -----------------------NY---------------------------------------------QLQPEAIEQA  156 (389)
T ss_pred             -----------------------CC---------------------------------------------CcCHHHHHHh
Confidence                                   00                                             0133444443


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcCC
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +    +++++++++++++||||.+++   +++|.++|+++|+++|+||+|.....+. ...+.....+ .....+++.||
T Consensus       157 i----~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~  231 (389)
T PRK05957        157 I----TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPG-SGNHTISLYSL  231 (389)
T ss_pred             c----CcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCC-ccCcEEEEecc
Confidence            3    456899999999999999999   8999999999999999999999444332 1111111111 22467999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      ||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++..+++.- ...+++.++.++++++.+.+.|++. +
T Consensus       232 SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~  308 (389)
T PRK05957        232 SKAYGFASWRIGYMVIPIHLLEAIKKIQDTI--LICPPVVSQYAALGALQVG-KSYCQQHLPEIAQVRQILLKSLGQLQD  308 (389)
T ss_pred             hhhccCccceeEEEecCHHHHHHHHHHHhhc--ccCCCcHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999778   99999999999988765443  3355667777777777521 2345667788899999999999887 4


Q ss_pred             C-ccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        404 F-PVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       404 ~-~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      + .+..+.++ +++++++...+..++++.|++++||.+.|+..+. ...++++|++++. .+++++++.+++|.+.++++
T Consensus       309 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~~  386 (389)
T PRK05957        309 RCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFG-MKNGCYLRIAYGA-LQKATAKEGIERLVQGLKTI  386 (389)
T ss_pred             CccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhC-CCCCCEEEEEEec-CCHHHHHHHHHHHHHHHHhh
Confidence            3 44455544 6678887666788999999767899999998753 2335799999973 57889999999998887764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.97  E-value=5.1e-28  Score=250.12  Aligned_cols=352  Identities=15%  Similarity=0.133  Sum_probs=241.2

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+|+.++   ..++  ||+|.+++.+++++.....   ..  -..+...++.+++++++.  .++++|++||++|+
T Consensus        80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~---~~--~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAv  154 (459)
T PRK11522         80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHS---QE--LLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESV  154 (459)
T ss_pred             CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccc---cc--cCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHH
Confidence            45556666432   1223  7999999999999753321   11  235777889999999864  45788899999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      +.|++.......                                           ..++.++|.+++.||..        
T Consensus       155 e~AlklAr~~t~-------------------------------------------~~gr~~ii~~~~~yHG~--------  183 (459)
T PRK11522        155 EAALKLAKAYQS-------------------------------------------PRGKFTFIATSGAFHGK--------  183 (459)
T ss_pred             HHHHHHHHHHhc-------------------------------------------cCCCcEEEEecCCCCCC--------
Confidence            999964432100                                           00244566666666511        


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                        ..|.....+..                           .+...+......+..++++|.+.+
T Consensus       184 ------------------t~~~ls~~~~~---------------------------~~~~~~~~~~~~~~~~~~~d~~~l  218 (459)
T PRK11522        184 ------------------SLGALSATAKS---------------------------TFRKPFMPLLPGFRHVPFGNIEAM  218 (459)
T ss_pred             ------------------cHHHhhhcCCc---------------------------ccccCCCCCCCCCcccCCCCHHHH
Confidence                              00000000000                           000000000112445677788888


Q ss_pred             HHHHhhc--cCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCce
Q psy16848        249 TQVLENM--DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       249 ~~~l~~~--~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      ++.+++.  ..+++++++++++++..|.+.|    +++++++|++||+++|+||+++ +|..|..+  ..+.+++  .+|
T Consensus       219 ~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~--a~e~~gv--~PD  294 (459)
T PRK11522        219 RTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMF--ACEHENV--QPD  294 (459)
T ss_pred             HHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhh--hhhccCC--CCC
Confidence            8888653  2356889999999999999887    9999999999999999999997 44444311  2344555  789


Q ss_pred             EEEcCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       322 i~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      ++  +++|.+|+.   -|.+++++++.+.+......++.+++.+++.++++.++|+.+.++.   ..++.+++.+++++.
T Consensus       295 iv--t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~  369 (459)
T PRK11522        295 IL--CLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQN---LPAQAEQKGDYLLDG  369 (459)
T ss_pred             EE--EechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHH
Confidence            98  999999862   2777778888776642211222345679999999999999986654   788899999999999


Q ss_pred             HHhC--CCc-c---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q psy16848        399 LIQI--GFP-V---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVT  472 (514)
Q Consensus       399 L~~~--g~~-~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~  472 (514)
                      |+++  +++ .   +...|.++.+.+.+......+...|+ ++||.+.+..     .+.+.+|+.++..+|++|++++++
T Consensus       370 L~~l~~~~~~~i~~VrG~Gl~~giel~~~~~~~~i~~~l~-~~Gvl~~~~~-----~~~~~lr~~Ppl~~t~~~id~~l~  443 (459)
T PRK11522        370 FRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMF-RQRVLVAGTL-----NNAKTIRIEPPLTLTIEQCEQVLK  443 (459)
T ss_pred             HHHHHHhCCCceeeEEeceeEEEEEecCchHHHHHHHHHH-HCCeEEEecC-----CCCCEEEEECCccCCHHHHHHHHH
Confidence            8876  343 2   23467788898876544667888886 8999996431     235789999999999999999999


Q ss_pred             HHHHHHHHcCC
Q psy16848        473 DLLAVWKSLDL  483 (514)
Q Consensus       473 ~l~~~l~~~~~  483 (514)
                      +++++++++.+
T Consensus       444 ~l~~~l~~~~~  454 (459)
T PRK11522        444 AARKALAAMRV  454 (459)
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>PRK08068 transaminase; Reviewed

Probab=99.97  E-value=1.5e-27  Score=244.54  Aligned_cols=341  Identities=17%  Similarity=0.146  Sum_probs=231.7

Q ss_pred             CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecc-cccc
Q psy16848         16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSC-YVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sG-t~a~   88 (514)
                      .+..++|+..++..  .+|.+.+++.+.+....  ...+....|..++.+++.+.+.+.+|.    +..+++++| ++++
T Consensus        30 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l  107 (389)
T PRK08068         30 EGHDVINLGQGNPDQPTPEHIVEALQEAAENPA--NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL  107 (389)
T ss_pred             cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence            34567888765543  25678888888776421  111212334555666666555544452    223445555 5666


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++..  +||.|+++.++|......++..|++++.++.++.+.                     |           
T Consensus       108 ~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~---------------------~-----------  153 (389)
T PRK08068        108 VELPQCLMN--PGDTILVPDPGYPDYLSGVALARAQFETMPLIAENN---------------------F-----------  153 (389)
T ss_pred             HHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccC---------------------C-----------
Confidence            677777765  999999999999888777777777666544310000                     0           


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                               ..|++.+
T Consensus       154 -------------------------------------------------------------------------~~d~~~l  160 (389)
T PRK08068        154 -------------------------------------------------------------------------LPDYTKI  160 (389)
T ss_pred             -------------------------------------------------------------------------CCCHHHH
Confidence                                                                                     0023333


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccc-cccCCCCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAV-GLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~-g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+    .++++++++++|+||||.+++   +++|.++|++|++++|+||+|.. .+.+....++....+ ..+..+++
T Consensus       161 ~~~~----~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~-~~~~~i~~  235 (389)
T PRK08068        161 PEEV----AEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPG-AKDVGIEL  235 (389)
T ss_pred             HHhc----cccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCC-ccCCEEEE
Confidence            3333    345789999999999999999   57888899999999999999983 332211112222111 12467899


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +||||.+|.+|   ||+++++++++.+......+  ..+.++..+.++..++... ..++++.++.++++++.+.+.|++
T Consensus       236 ~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~  312 (389)
T PRK08068        236 YTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHL--FVSLFGAIQDAAIEALLSD-QSCVAELVARYESRRNAFISACRE  312 (389)
T ss_pred             ecchhccCCccceeEeEecCHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998778   99999999999988766554  3345555666666666422 355678899999999999999999


Q ss_pred             CCCccccCCCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       402 ~g~~~~~~~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .|+.+..+.+++ +++.+++..+..++.+.|++++||.+.++..+. ..+++++|++++  .+++.+..++++|++
T Consensus       313 ~g~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~--~~~~~l~~al~~l~~  385 (389)
T PRK08068        313 IGWEVDAPKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFG-EHGEGYVRVGLL--TDEERLREAVERIGK  385 (389)
T ss_pred             CCCcccCCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhC-ccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            888777777764 578887655678999999745799999988643 334679999997  456777777777654

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.97  E-value=7e-28  Score=247.40  Aligned_cols=347  Identities=15%  Similarity=0.124  Sum_probs=236.9

Q ss_pred             CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~   88 (514)
                      +|+.|+||.++   ..+  .||+|.+++.+|+++.....   ..  -..+...++.+++++.+..  ++++|++||++|+
T Consensus        73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~---~~--~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~  147 (442)
T TIGR03372        73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHS---QE--LLDPLRALLAKTLAALTPGKLKYSFFCNSGTESV  147 (442)
T ss_pred             CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcc---cc--cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHH
Confidence            45556665332   112  38999999999999754321   11  2257778899999998743  5678889999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      +.|++.....                                           ...++++++|.+++.||..        
T Consensus       148 e~AlklAr~~-------------------------------------------t~~~gr~~ii~~~~~yHG~--------  176 (442)
T TIGR03372       148 EAALKLAKAY-------------------------------------------QSPRGKFTFIAASGAFHGK--------  176 (442)
T ss_pred             HHHHHHHHHH-------------------------------------------HhhcCCcEEEEECCCccCC--------
Confidence            9999644320                                           0012345666666666511        


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                        ..|....++..                           .+...+......+..+|.+|.+.+
T Consensus       177 ------------------t~~~ls~t~~~---------------------------~~~~~~~p~~~~~~~~p~~d~~~~  211 (442)
T TIGR03372       177 ------------------SLGALSATAKP---------------------------AFRKPFMPLLPGFHHVAFGDIEAM  211 (442)
T ss_pred             ------------------CHHHhhccCCc---------------------------ccCCCCCCCCCCCEEeCCCCHHHH
Confidence                              00000000000                           000000001123466777888888


Q ss_pred             HHHHhhc--cCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCce
Q psy16848        249 TQVLENM--DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       249 ~~~l~~~--~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      ++.+++.  ..+++++|+++++++..|...|    +++++++|++||+++|+||+++ +|..|..+  ..+.+++  .+|
T Consensus       212 ~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~--a~e~~gv--~PD  287 (442)
T TIGR03372       212 LKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF--ACEHEGV--QPD  287 (442)
T ss_pred             HHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch--hhhhcCC--CCC
Confidence            8887642  2356899999999999999888    9999999999999999999997 55554321  2334554  799


Q ss_pred             EEEcCCcccccC---CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       322 i~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      ++  +++|.+|+   +.|.+++++++.+.+......+..+++.+++.++++.++|+.+.++.   +.++.+++.+++++.
T Consensus       288 iv--t~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~  362 (442)
T TIGR03372       288 IL--CLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKN---LPAQAAIKGDFLLDG  362 (442)
T ss_pred             ee--eehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence            99  79999975   12777788888887743221222345779999999999999986655   677788888888888


Q ss_pred             HHhC--CCc-c---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q psy16848        399 LIQI--GFP-V---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVT  472 (514)
Q Consensus       399 L~~~--g~~-~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~  472 (514)
                      |+++  .++ .   +...|.++.+++.+......+.+.|+ ++||++.+...     +.+.+|+.++..+|++|+|++++
T Consensus       363 L~~l~~~~~~~i~~vRG~Gl~~giel~~~~~~~~i~~~l~-~~Gvl~~~~~~-----~~~~lr~~Ppl~~t~~~id~~~~  436 (442)
T TIGR03372       363 FQQLAAEYPDLIIEARGKGLLMAIEFRDNEIGYAFAKELF-QQNILVAGTLN-----NAKSIRIEPPLTITIEQCALVIK  436 (442)
T ss_pred             HHHHHHhCCCceEEEecceEEEEEEeCChHHHHHHHHHHH-HCCcEEeecCC-----CCCEEEEECCcccCHHHHHHHHH
Confidence            8775  232 1   24567788899876545678889996 89999964321     24689999999999999999999


Q ss_pred             HHHHHH
Q psy16848        473 DLLAVW  478 (514)
Q Consensus       473 ~l~~~l  478 (514)
                      ++++++
T Consensus       437 ~l~~~~  442 (442)
T TIGR03372       437 AAKDAL  442 (442)
T ss_pred             HHHHhC
Confidence            998753

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.96  E-value=1.5e-27  Score=246.07  Aligned_cols=342  Identities=16%  Similarity=0.151  Sum_probs=239.2

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc--ccCcchHHHHHHHHHHhHcCC-C-cE-EEEeccccccccchh
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN--ISGNSLFHEKLEEDVAKLHQK-E-AG-LVFTSCYVANDSTLF   93 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~-~-~~-i~~~sGt~a~~~~l~   93 (514)
                      .|.|.++... -++.+.+++.+.+..+..+......  .....+..+++++.+++++|. + +. ++++|+|+++..++.
T Consensus        25 iYld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~  103 (406)
T PRK09295         25 AYLDSAASAQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVAN  103 (406)
T ss_pred             EEEeCccccc-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHH
Confidence            5566655443 3567889998888764322211111  111346678899999999986 2 34 444555677666666


Q ss_pred             hcc--ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         94 TLG--KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        94 ~l~--~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      ++.  ...+||.|++++.+|++....+.                                                    
T Consensus       104 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~----------------------------------------------------  131 (406)
T PRK09295        104 SWGNSNVRAGDNIIISEMEHHANIVPWQ----------------------------------------------------  131 (406)
T ss_pred             HhhhhcCCCcCEEEECcchhhHHHHHHH----------------------------------------------------
Confidence            542  13499999999999988653211                                                    


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLTQ  250 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~  250 (514)
                                                                              ......|++++.++. .+.....+
T Consensus       132 --------------------------------------------------------~~~~~~g~~v~~v~~~~~~~~d~~  155 (406)
T PRK09295        132 --------------------------------------------------------MLCARVGAELRVIPLNPDGTLQLE  155 (406)
T ss_pred             --------------------------------------------------------HHHHHcCcEEEEEecCCCCCCCHH
Confidence                                                                    111223444444441 11112233


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+.+..+++++++++++++||||.++|+++|.++|+++|+++++|++|+.|..        +......++|++++|+||.
T Consensus       156 ~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~--------~~~~~~~~~D~~~~s~~K~  227 (406)
T PRK09295        156 TLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH--------PVDVQALDCDFYVFSGHKL  227 (406)
T ss_pred             HHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCcc--------ccCchhcCCCEEEeehhhc
Confidence            33444455789999999999999999999999999999999999999987653        1111134789999999998


Q ss_pred             ccCCC-eEEEecHHHHHHHHhhcCce-------------------Ee-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        331 FGNIG-GYIVGTKNFIDTIRSYAAGF-------------------IF-TTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       331 lg~~G-G~l~~~~~~~~~l~~~~~~~-------------------~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      +|+.| |+++.++++++.+.....+.                   .+ ..+.+.....++.++++++.+.+++++.++.+
T Consensus       228 ~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~  307 (406)
T PRK09295        228 YGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQ  307 (406)
T ss_pred             cCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            89888 99999998877664321111                   01 12456777888899999887667888999999


Q ss_pred             HHHHHHHHHHHhC-CCccccC--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeCCC
Q psy16848        390 DIVAYLRNELIQI-GFPVEHT--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPTPF  461 (514)
Q Consensus       390 ~~~~~l~~~L~~~-g~~~~~~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~~~  461 (514)
                      ++.+++.+.|++. ++.+..+  ..+++.+.++. ....++.+.| +++||.++.+..|..+     ..+..+|+|++.+
T Consensus       308 ~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~-~~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~y  385 (406)
T PRK09295        308 NLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGK-HHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMY  385 (406)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECC-cCHHHHHHHH-HhCCeEEeccccchHHHHHHHCCCCEEEEEccCC
Confidence            9999999999887 6666543  35677777764 3456787877 6999999988765422     1235899999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~  479 (514)
                      +|++|+|+++++|+++.+
T Consensus       386 nt~~did~l~~~l~~i~~  403 (406)
T PRK09295        386 NTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999998754

>PLN00144 acetylornithine transaminase

Probab=99.96  E-value=7.5e-28  Score=244.88  Aligned_cols=352  Identities=16%  Similarity=0.146  Sum_probs=237.5

Q ss_pred             cCCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|++|+||.+.-   -++  ||++.+++.+++.+.... + .  . ...+...++.+++++..+.++++|++||++|++
T Consensus        12 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~-~--~-~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e   86 (382)
T PLN00144         12 VEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHV-S-N--V-YHTIPQVELAKRLVASSFADRVFFCNSGTEANE   86 (382)
T ss_pred             CCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCc-c-c--c-ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHH
Confidence            4788889985432   233  899999999999974332 1 1  1 124667888999998877778899999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .|++......                      +.+-.  ..  .       ......+++++.+++.||...        
T Consensus        87 ~AlklAr~~~----------------------~~~~~--~~--~-------~~~~~~r~~ii~~~~~yHG~t--------  125 (382)
T PLN00144         87 AAIKFARKYQ----------------------RVRAP--DK--K-------DPAASSATEFVSFSNSFHGRT--------  125 (382)
T ss_pred             HHHHHHHHHH----------------------hccCC--CC--c-------cccccccceEEEECCCccccc--------
Confidence            9996543200                      00000  00  0       000011578999999997211        


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                        .|.....+.                     +      .+...+...-..+..++++|.+.++
T Consensus       126 ------------------~~~~s~~~~---------------------~------~~~~~~~~~~~~~~~~~~~d~~~l~  160 (382)
T PLN00144        126 ------------------LGALALTSK---------------------E------QYRTPFEPLMPGVTFVEYGNLEAAR  160 (382)
T ss_pred             ------------------HHHHhcCCC---------------------c------cccccCCCCCCCeEEeCCCCHHHHH
Confidence                              000000000                     0      0000000011235677888888888


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEE
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      +.+.   ..++++|++++.+||.|...+    +++|+++|++||+++|+||+++ +|..|..+  ..+..++  .+|++ 
T Consensus       161 ~~~~---~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~--~~~~~~~--~PDi~-  232 (382)
T PLN00144        161 KLIQ---KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLW--AHEAYGV--EPDIM-  232 (382)
T ss_pred             HhcC---CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHh--hhhhcCC--CCCEE-
Confidence            8774   246889999999999665544    8999999999999999999998 55554321  1123444  68877 


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                       ||+|.+++ |   |++++++++.+.+.......  +...+++.++++.++|+.+.+..   ..++++++.+++.+.|++
T Consensus       233 -t~sK~l~~-G~pig~v~~~~~~~~~~~~~~~~~--T~~~~pl~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~  305 (382)
T PLN00144        233 -TLAKPLAG-GLPIGAVLVTEKVASAINPGDHGS--TFAGGPLVCNAALAVLDKISKPG---FLASVAKKGEYLRELLRR  305 (382)
T ss_pred             -EecccccC-CcceEEEEEcHHHHhccCCCCCCC--CCCCCHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHH
Confidence             99999986 5   99999999998886544333  55789999999999999886555   555666666666665554


Q ss_pred             C--CCc---cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        402 I--GFP---VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       402 ~--g~~---~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +  +.+   -+...|.++++++..  ....+...++ ++||.+.++..      .+.+|++++..++++++++++++|++
T Consensus       306 ~~~~~~~~~~vrg~G~~~~l~l~~--~~~~~~~~~~-~~Gv~i~~~~~------~~~lrl~p~~~~~~~~i~~~~~~l~~  376 (382)
T PLN00144        306 KLGGNPHVKEVRGVGLLVGIQLDV--PAGPLVDACR-DSGLLVLTAGK------GDVVRLVPPLVISEAELEQAVEILAD  376 (382)
T ss_pred             HHhhCCCceeeecCceEEEEEecC--ccHHHHHHHH-HCCeEEeecCC------CCEEEEeCCCccCHHHHHHHHHHHHH
Confidence            3  222   123467788888842  3567888885 99999976421      36899999988999999999999999


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      ++.++
T Consensus       377 ~l~~~  381 (382)
T PLN00144        377 CLPAL  381 (382)
T ss_pred             HHHhc
Confidence            98764

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.96  E-value=9.6e-29  Score=251.35  Aligned_cols=331  Identities=24%  Similarity=0.266  Sum_probs=237.2

Q ss_pred             eeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--------CCcEEEEeccccc
Q psy16848         19 VTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--------KEAGLVFTSCYVA   87 (514)
Q Consensus        19 ~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~i~~~sGt~a   87 (514)
                      .+||++++++..   +|.+.+++.+..+  +.........|+......++++.++++++        .+..+++++|+.+
T Consensus         2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~   79 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPPPPAAIKAAIR--GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA   79 (363)
T ss_dssp             TEEESSSSSTSSTTSSHHHHHHHHHHHH--HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred             CEEEEECCCCCCcccccchHHHHHHHHH--HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence            468998888774   4555555555443  00011222334445567888888888887        3336888899887


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeecc-------CCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYR-------HNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      ...++..+.+..+||.|+++.+.|......++..|.+++.++       +.|+++|+                       
T Consensus        80 ~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~-----------------------  136 (363)
T PF00155_consen   80 ALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALE-----------------------  136 (363)
T ss_dssp             HHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHH-----------------------
T ss_pred             chhhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccc-----------------------
Confidence            655554443234899999999999999999999999888776       33444444                       


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (363)
T PF00155_consen  137 --------------------------------------------------------------------------------  136 (363)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCChhHHHHHHhhccCC--CceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCC--cccc
Q psy16848        241 RHNDVNHLTQVLENMDVK--IPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAG--IGER  313 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~--~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~--~~~~  313 (514)
                               +.+++...+  +++++++++|+||||..++   +++|.++|++||+++|+||+|.....+.....  ....
T Consensus       137 ---------~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  207 (363)
T PF00155_consen  137 ---------EALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLL  207 (363)
T ss_dssp             ---------HHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHH
T ss_pred             ---------cccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccc
Confidence                     444443222  3578999999999999999   56666669999999999999997665533110  1111


Q ss_pred             CCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh--chHHHHHHHH
Q psy16848        314 DGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS--QEGVELRAKH  388 (514)
Q Consensus       314 ~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~  388 (514)
                      .  ....++++.|+||.+|.+|   ||+++++++++.++.....+    ..+...+.++...+.....  .++++.++++
T Consensus       208 ~--~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  281 (363)
T PF00155_consen  208 D--EDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSG----LSSSPMQAAAAAALSDPELVEKWLEELRERL  281 (363)
T ss_dssp             T--TTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHT----TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--ccccceeeeeccccccccccccccccchhhhhhhhhhccccc----cccchhhHHHHHhhhcccccccccccchhhH
Confidence            1  1123799999999999889   99999999999988766544    2366666666666664432  2778899999


Q ss_pred             HHHHHHHHHHHHhCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        389 QDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      +++++++.+.|++.++.+..+.++ ++++.++.. +..++.+.|+++.||.+.|+..+..   .+++|+++ ...+++++
T Consensus       282 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~pg~~~~~---~~~iRi~~-a~~~~e~~  356 (363)
T PF00155_consen  282 RENRDLLREALEEIGITVLPPEAGFFLWVRLDPN-DAEELAQELLEEYGILVRPGSYFGV---PGYIRISL-ASHSEEDL  356 (363)
T ss_dssp             HHHHHHHHHHHHHTTSEEEHHSBSSEEEEEESHH-HHHHHHHHHHHHHTEEEEEGGGGTS---TTEEEEEG-GCSCHHHH
T ss_pred             HHHHHHHHHHHHHhhhheeeccCccEEEEEcccc-hHHHHHHHHHHhCCEEEEecCCCCC---CCEEEEEe-ccCCHHHH
Confidence            999999999999999988776665 444555432 5688999997444999999998665   67999999 46899999


Q ss_pred             HHHHHHH
Q psy16848        468 DKFVTDL  474 (514)
Q Consensus       468 d~~~~~l  474 (514)
                      ++++++|
T Consensus       357 ~~~~~~l  363 (363)
T PF00155_consen  357 EEALERL  363 (363)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhC
Confidence            9999876

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK08912 hypothetical protein; Provisional

Probab=99.96  E-value=2.1e-27  Score=243.33  Aligned_cols=342  Identities=18%  Similarity=0.219  Sum_probs=237.1

Q ss_pred             ceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEecccccccc
Q psy16848         18 RVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~   90 (514)
                      ...+|+..+..-  .++.+.+++.+.+.. +  ...+....|..++.+.+.+.+.+.+|.    + ..++++++++++..
T Consensus        26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~-~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~  102 (387)
T PRK08912         26 HGAINLGQGFPDDPGPEDVRRAAADALLD-G--SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAA  102 (387)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhc-C--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHH
Confidence            356888653322  356777777776653 1  122333345566666777666665552    2 34555556677777


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|......++..|.+++.++... +                                    
T Consensus       103 ~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~------------------------------------  143 (387)
T PRK08912        103 ALLALVE--PGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-P------------------------------------  143 (387)
T ss_pred             HHHHhcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-c------------------------------------
Confidence            7777765  999999999999888877777776665443210 0                                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                              +.                                             ..|.+.+++
T Consensus       144 ------------------------~~---------------------------------------------~~~~~~l~~  154 (387)
T PRK08912        144 ------------------------HW---------------------------------------------RLPRAALAA  154 (387)
T ss_pred             ------------------------cC---------------------------------------------cCCHHHHHH
Confidence                                    00                                             002333333


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+    .++++++++++|+||||.+++   +++|.++|++|++++|+||+|.....+. ...++....+ ..+.+++++|
T Consensus       155 ~~----~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S  229 (387)
T PRK08912        155 AF----SPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG-MRERTVKIGS  229 (387)
T ss_pred             Hh----CccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC-ccCceEEEee
Confidence            33    346789999999999999999   6789999999999999999998443322 2222222222 1357899999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      |||.+|.+|   ||+++++++++.+........+  +.++..+.++...+... ..++++.+++++++++++.+.|++.|
T Consensus       230 ~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~--~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g  306 (387)
T PRK08912        230 AGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTF--TTPPNLQAAVAYGLGKP-DDYFEGMRADLARSRDRLAAGLRRIG  306 (387)
T ss_pred             chhhccCcCceeEEEecCHHHHHHHHHHHhhccc--cCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999768   9999999999988766544322  44555666666666422 34567788999999999999999988


Q ss_pred             CccccCCCc-EEEEEeCC---CccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPSH-IIPIKIGN---PALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       404 ~~~~~~~~~-~~~i~l~~---~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.+..+.++ ++++.++.   ..+..++++.+++++||.+.|+..+.. ....+++|++++.  .++++++++++|++++
T Consensus       307 ~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~--~~~~l~~~l~rl~~~l  384 (387)
T PRK08912        307 FPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK--RDATLDEAVERLAAAR  384 (387)
T ss_pred             CcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC--CHHHHHHHHHHHHHHH
Confidence            887777655 56677764   245678999986678999999886532 2346799999994  5889999999999877


Q ss_pred             HH
Q psy16848        479 KS  480 (514)
Q Consensus       479 ~~  480 (514)
                      ++
T Consensus       385 ~~  386 (387)
T PRK08912        385 RR  386 (387)
T ss_pred             hc
Confidence            54

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=9.9e-28  Score=245.01  Aligned_cols=331  Identities=21%  Similarity=0.231  Sum_probs=238.6

Q ss_pred             cCCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|++++||.++.   |+|  ||++.+++.+++++....   +.  ....+...++++++.+..+.+.+++++||++|+.
T Consensus        26 ~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~--~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~  100 (377)
T PRK02936         26 NNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV---SN--LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANE  100 (377)
T ss_pred             CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccc---cc--ccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHH
Confidence            4788999998776   776  799999999999975321   11  1235777888888888877778899999999999


Q ss_pred             cchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         90 STLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        90 ~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .++..... .++++.|..+..+|.++..+++..+........                                      
T Consensus       101 ~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~--------------------------------------  142 (377)
T PRK02936        101 AALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGF--------------------------------------  142 (377)
T ss_pred             HHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccC--------------------------------------
Confidence            99985432 234456777788888887666554422110000                                      


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                    ......+..++.+|.+.+
T Consensus       143 --------------------------------------------------------------~~~~~~~~~~~~~d~~~l  160 (377)
T PRK02936        143 --------------------------------------------------------------GPLLPGFTHVPFNDIKAL  160 (377)
T ss_pred             --------------------------------------------------------------CCCCCCceEeCCCCHHHH
Confidence                                                                          000012344566677777


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccCCCccCceE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERDGQLHNMDI  322 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~~~~~~~di  322 (514)
                      ++.+.    +++++++++++++++|...+    +++|+++|++||+++|+||+|+ +|..|   .++. ...+.  .+|+
T Consensus       161 ~~~~~----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g---~~~~~~~~~~--~~di  231 (377)
T PRK02936        161 KEVMN----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG---TLFAYEQFGL--DPDI  231 (377)
T ss_pred             HHhcc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhHHHhhCC--CCcE
Confidence            76663    45899999999999988754    8999999999999999999997 43333   2221 22333  5677


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +  ++||.+++ |   |++++++++.+.+.......  +.+.+++.++++.++++.+..+   +.+++++++.+++.+.|
T Consensus       232 ~--t~sK~l~~-G~~ig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L  303 (377)
T PRK02936        232 V--TVAKGLGN-GIPVGAMIGKKELGTAFGPGSHGS--TFGGNPLAMAAAKEVLQVIKQP---SFLEEVQEKGEYFLQKL  303 (377)
T ss_pred             E--EEcccccC-CCccEEEEEcHHHHhhccCCCCCC--CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHH
Confidence            6  89999985 5   99999999988886544333  4467999999999999977433   35677778888888887


Q ss_pred             HhC--CCccc---cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        400 IQI--GFPVE---HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       400 ~~~--g~~~~---~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      ++.  +++..   .+.+.++++.+++.  ...+.+.|. ++||.+.+.       +.+++|++++..++++++++++++|
T Consensus       304 ~~~~~~~~~~~~v~~~g~~~~i~~~~~--~~~~~~~l~-~~gv~v~~~-------g~~~lRi~p~~~~~~~~i~~~i~~l  373 (377)
T PRK02936        304 QEELEHLECVKNIRGKGLMIGIECTEE--VAPVIEQLR-EEGLLVLSA-------GPNVIRLLPPLVVTKEELDQAVYLL  373 (377)
T ss_pred             HHHHhhCCcEEeEeecceEEEEEecch--HHHHHHHHH-HCCeEEecC-------CCCEEEEECCcccCHHHHHHHHHHH
Confidence            763  33322   34566888888653  667888884 899998752       3468999998889999999999999


Q ss_pred             HHH
Q psy16848        475 LAV  477 (514)
Q Consensus       475 ~~~  477 (514)
                      +++
T Consensus       374 ~~~  376 (377)
T PRK02936        374 KKV  376 (377)
T ss_pred             HHh
Confidence            875

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.8e-27  Score=242.86  Aligned_cols=341  Identities=14%  Similarity=0.139  Sum_probs=229.6

Q ss_pred             CCceeeecccCCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEec-ccccc
Q psy16848         16 SNRVTCRLSSVQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTS-CYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~s-Gt~a~   88 (514)
                      .|...+|+..++...  ++++.+++.+.+...  ....+....|..++.+++.+.+.+.+|.    +..+++++ +++++
T Consensus        33 ~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al  110 (394)
T PRK05942         33 QGLDLIDLGMGNPDGAAPQPVIEAAIAALADP--QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGL  110 (394)
T ss_pred             cCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCC--CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHH
Confidence            455688996544332  345777776666431  1112222334555666666666555452    23355554 45677


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.+++.  +||.|+++.++|......++..|.+++.++... +                    +             
T Consensus       111 ~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~--------------------~-------------  154 (394)
T PRK05942        111 THLALAYVN--PGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKP-E--------------------N-------------  154 (394)
T ss_pred             HHHHHHhCC--CCCEEEEcCCCCcchHHHHHHcCCEEEEeecCC-c--------------------c-------------
Confidence            777777765  999999999999888766666666655443210 0                    0             


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                +.                                             ..|.+.+
T Consensus       155 --------------------------~~---------------------------------------------~~d~~~l  163 (394)
T PRK05942        155 --------------------------DW---------------------------------------------LIDLSSI  163 (394)
T ss_pred             --------------------------CC---------------------------------------------ccCHHHH
Confidence                                      00                                             0033333


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+    .++++++++++|+||||.+++   +++|.++|+++|+++|+||+|..... +....++....+ ..+.++++
T Consensus       164 ~~~~----~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~  238 (394)
T PRK05942        164 PEEV----AQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG-AKDIGVEF  238 (394)
T ss_pred             HHhc----cccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC-ccccEEEE
Confidence            3333    356899999999999999999   78999999999999999999984443 222212222221 12456888


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +||||.+|.+|   ||+++++++++.+.......  ..+.+...+.++..+++.. ..++++.+++++++++++.+.|++
T Consensus       239 ~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~  315 (394)
T PRK05942        239 HTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNL--DYGIFSALQKAAETALQLP-DSYLQQVQERYRTRRDFLIQGLGE  315 (394)
T ss_pred             ecchhccCChhhheeeeecCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998778   99999999999988765433  2255667777777777643 456778899999999999999998


Q ss_pred             CCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       402 ~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .++.+..+.++ ++++.++...+..++...+++++||.+.++..+. ..+.+++|++++  .+.+.+.+.++++.+
T Consensus       316 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~-~~~~~~iRis~~--~~~~~l~~~l~~l~~  388 (394)
T PRK05942        316 LGWNIPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFG-EGGEGYVRISLI--ADCDRLGEALDRLKQ  388 (394)
T ss_pred             CCCeecCCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhC-cCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            88877667666 6778887655567788777678999999988643 234679999997  344555555555543

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.96  E-value=1.3e-27  Score=245.58  Aligned_cols=341  Identities=19%  Similarity=0.204  Sum_probs=236.9

Q ss_pred             eeeecccCCCCCChhHHHHHHHHH-HHhCCCCCCcCcccCcchHHHHHHH----HHHhHcCCCcEEE-Eeccccccccch
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVAKLHQKEAGLV-FTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~la~~~~~~~~i~-~~sGt~a~~~~l   92 (514)
                      .+-.++|++|+ +|.+++++...+ .+|+.+++++++..| .+.+.++|+    ++++++|.+++++ ++||+.|+..++
T Consensus        30 ~~~l~~sen~~-~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l  107 (416)
T PRK13034         30 HLELIASENFT-SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVY  107 (416)
T ss_pred             CeeecccccCC-CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHH
Confidence            34456888998 799999999995 899998899999888 578999998    9999999999955 589999999999


Q ss_pred             hhccccCCCceEEecCccchhh-hhhhhcC--CCCe--eeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASM-IQGIRNS--SAPK--IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~-~~~~~~~--~~~~--~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .++.+  |||+|+++...|.+. ..+++..  +...  ..+.++                                    
T Consensus       108 ~al~~--~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------------------------------  149 (416)
T PRK13034        108 LALLK--PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVD------------------------------------  149 (416)
T ss_pred             HHhcC--CCCEEEEcCccceeeeecCCcceeccceeeeEEcccc------------------------------------
Confidence            99976  999999999999873 3233221  1100  111110                                    


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                           .+ ....|.+.
T Consensus       150 ---------------------------------------------------------------------~~-~~~~d~~~  159 (416)
T PRK13034        150 ---------------------------------------------------------------------RL-TGLIDYDE  159 (416)
T ss_pred             ---------------------------------------------------------------------cc-cCCcCHHH
Confidence                                                                                 00 00135666


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +++.++..   ++++|+++.+.  .|...|+++|.++|++||+++|+|++|++|..+..   .  ..+....+|++++|+
T Consensus       160 le~~l~~~---~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g---~--~~~~~~~~Di~~~s~  229 (416)
T PRK13034        160 VEELAKEH---KPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAG---E--HPNPFPHAHVVTTTT  229 (416)
T ss_pred             HHHHHhhc---CCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccC---C--CCCCCCCceEEEEeC
Confidence            66666432   36788775432  57888999999999999999999999998877532   1  111113589999999


Q ss_pred             cccc-cCCCeEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        328 GKAF-GNIGGYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       328 sK~l-g~~GG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      ||++ |+.||++++++ .+.+.++........+...++..++++.+.++.. .....+.+++++++.+++++.|++.|++
T Consensus       230 ~K~l~g~~GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~-~~~~~~~~~~l~~~a~~l~~~L~~~G~~  308 (416)
T PRK13034        230 HKTLRGPRGGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEAL-QPEFKTYAKQVIANAQALAEVLKERGYD  308 (416)
T ss_pred             cccCCCCCCeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            9999 55678877754 4445444322211011122333333333444333 2344567899999999999999999988


Q ss_pred             ccc--CCCcEEEEEeCCCc-cHHHHHHHHHHhCCeEEecccCCC---CCCCCcEEEEEeCC----CCCHHHHHHHHHHHH
Q psy16848        406 VEH--TPSHIIPIKIGNPA-LNTKICDMLLKEKGHYVQPINYPT---VPVGEEKIRLAPTP----FHTREMIDKFVTDLL  475 (514)
Q Consensus       406 ~~~--~~~~~~~i~l~~~~-~~~~~~~~Ll~~~GI~v~~~~~~~---~~~~~~~iRl~~~~----~~t~e~id~~~~~l~  475 (514)
                      +..  +.++++.+.+.+.. ....+.+.| +++||.+.....|.   .+..+..+|++++.    .++++|++++++.|+
T Consensus       309 ~~~~~~~t~i~~v~~~~~~~~~~~~~~~L-~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~  387 (416)
T PRK13034        309 LVSGGTDNHLLLVDLRPKGLSGKDAEQAL-ERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWIL  387 (416)
T ss_pred             eccCCCCCcEEEEEcCCCCCCHHHHHHHH-HhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHH
Confidence            764  46678888776543 345555777 58999997532211   12225689999886    778999999999999


Q ss_pred             HHHHHc
Q psy16848        476 AVWKSL  481 (514)
Q Consensus       476 ~~l~~~  481 (514)
                      +++...
T Consensus       388 ~~~~~~  393 (416)
T PRK13034        388 DVLDDL  393 (416)
T ss_pred             HHHhcC
Confidence            998854

>KOG1358|consensus

Probab=99.96  E-value=1.6e-28  Score=233.13  Aligned_cols=358  Identities=22%  Similarity=0.340  Sum_probs=293.1

Q ss_pred             hcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         14 HKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        14 ~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      ..+|+.+++|+|.+|++   ++++.+.+...+++||.+.+|++.+||+.+.+..+++++++++|.+++++.+-|-.++.+
T Consensus        90 ~i~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~S  169 (467)
T KOG1358|consen   90 TIDGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIES  169 (467)
T ss_pred             EecCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhhh
Confidence            35889999999999995   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++++  +||.+.+++..+..++.++++.+..++.|.|+|+++|++.+.+......|.                    
T Consensus       170 ~ipafsK--rGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~--------------------  227 (467)
T KOG1358|consen  170 AIPAFSK--RGDIIFVDEAVNFAIQKGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKN--------------------  227 (467)
T ss_pred             cchhhhc--cCcEEEEehhhhHHHHHHHhhhhheeEEecCCCHHHHHHhccCcchhhhhc--------------------
Confidence            9999988  999999999999999999999999999999999999998775533111110                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (467)
T KOG1358|consen  228 --------------------------------------------------------------------------------  227 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCC-ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCc-cCceEEEcCCc
Q psy16848        251 VLENMDVKI-PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLG  328 (514)
Q Consensus       251 ~l~~~~~~~-~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~-~~~di~~~S~s  328 (514)
                          ..... .+.++++...-++|.+.|+++|.++..+|-..+|.||.+++|.+|+.|++..++++.. .+.|++++|+.
T Consensus       228 ----~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~  303 (467)
T KOG1358|consen  228 ----PKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASME  303 (467)
T ss_pred             ----cccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccc
Confidence                00011 3578889999999999999999999999999999999999999999999999998874 67899999999


Q ss_pred             ccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        329 KAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       329 K~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      -+++..||+.+++.-+++.-+-...++.|+.+.|+....++..++.....+  +++.+.++.....+.+.|... ++.+.
T Consensus       304 ~alas~GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~--p~~~~~L~~k~~~~H~~l~~~s~~~v~  381 (467)
T KOG1358|consen  304 TALASGGGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWN--PEIVQPLRAKVAKFHAALSSNSGFIVS  381 (467)
T ss_pred             ccccccCceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhC--cchhhhhhccccccchhhhcCCceEEe
Confidence            999887899888655555444445667788899999999999999876432  247777777777778888776 56665


Q ss_pred             cC-CCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCC-C--CCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        408 HT-PSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTV-P--VGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       408 ~~-~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~-~--~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      .+ .++++.+.+...        ...++++++++ .+++.+....+-.. .  .-+..+|+++...+++||++++++.++
T Consensus       382 ~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i-~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik  460 (467)
T KOG1358|consen  382 GSPESPIIHLQLERSYGSREKEEKLLEEIVDKCI-AEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIK  460 (467)
T ss_pred             cCcCCceeeeeecccccchHHHHHHHHHHHHHHH-hhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            43 577777777541        12457888887 45888864442100 0  124589999999999999999999999


Q ss_pred             HHHHH
Q psy16848        476 AVWKS  480 (514)
Q Consensus       476 ~~l~~  480 (514)
                      +....
T Consensus       461 ~~~~~  465 (467)
T KOG1358|consen  461 EVASA  465 (467)
T ss_pred             HHHHh
Confidence            87654

>PRK07324 transaminase; Validated

Probab=99.96  E-value=2.3e-27  Score=241.37  Aligned_cols=321  Identities=21%  Similarity=0.169  Sum_probs=227.8

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccccccchhhccccCCCceEEe
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVANDSTLFTLGKMIPGLHYIS  106 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~  106 (514)
                      .++.+ +++.+++......++   ...|.    .++++.++++++   .+..++++++++|+..++.+++.  +||+|++
T Consensus        40 ~~~~~-~~~~~~~~~~~~~Y~---~~~G~----~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~--~gd~Vl~  109 (373)
T PRK07324         40 AGKNP-EAFYQELGQKKLTYG---WIEGS----PEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVE--PGDHVIS  109 (373)
T ss_pred             cCcch-HHHHHHHhcCCccCC---CCCCC----HHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCC--CCCEEEE
Confidence            35566 777777765322222   22233    467777777764   24456556667888888888866  9999999


Q ss_pred             cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848        107 DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  186 (514)
Q Consensus       107 ~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (514)
                      +.+.|......++..|.+++.++...                                                      
T Consensus       110 ~~P~y~~~~~~~~~~g~~v~~v~~~~------------------------------------------------------  135 (373)
T PRK07324        110 VYPTYQQLYDIPESLGAEVDYWQLKE------------------------------------------------------  135 (373)
T ss_pred             cCCCchhHHHHHHHcCCEEEEEeccc------------------------------------------------------
Confidence            99999887766666666655443210                                                      


Q ss_pred             cccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe
Q psy16848        187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE  266 (514)
Q Consensus       187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~  266 (514)
                                                                             .+++....+.+++..++++++++++
T Consensus       136 -------------------------------------------------------~~~~~~d~~~l~~~~~~~~kli~i~  160 (373)
T PRK07324        136 -------------------------------------------------------ENGWLPDLDELRRLVRPNTKLICIN  160 (373)
T ss_pred             -------------------------------------------------------ccCCCCCHHHHHHhCCCCCcEEEEe
Confidence                                                                   0111112223333345678999999


Q ss_pred             cCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEe
Q psy16848        267 TVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVG  340 (514)
Q Consensus       267 ~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~  340 (514)
                      +|+||||.+++   +++|.++|++||+++|+||+|.....+....++.   . ..+..++++||||.+|.+|   ||+++
T Consensus       161 ~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~---~-~~~~~I~~~s~SK~~~~~G~RiG~i~~  236 (373)
T PRK07324        161 NANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA---D-LYEKGISTNSMSKTYSLPGIRVGWIAA  236 (373)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh---h-ccCCEEEEecchhhcCCccceeEEEec
Confidence            99999999999   8999999999999999999998433222111111   1 1245789999999999778   99999


Q ss_pred             cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCCc-EEEEEe
Q psy16848        341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPSH-IIPIKI  418 (514)
Q Consensus       341 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~i~l  418 (514)
                      ++++++.+........  .+.+.+.+.++..+++.. +..+++.++.++++++.+.+.|++. ++.+..+.++ ++++.+
T Consensus       237 ~~~li~~~~~~~~~~~--~~~~~~~q~~a~~~l~~~-~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~  313 (373)
T PRK07324        237 NEEVIDILRKYRDYTM--ICAGVFDDMLASLALEHR-DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKL  313 (373)
T ss_pred             CHHHHHHHHHHhCcEE--ecCChHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEe
Confidence            9999999988765542  355667777777777632 3456677888888999999999876 6666566554 455666


Q ss_pred             CCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        419 GNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       419 ~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +...+..+++++|++++||.+.|+..+..   ++++|++++  .+++.+++.+++|++++++.
T Consensus       314 ~~~~~~~~~~~~ll~~~gv~v~pg~~F~~---~~~iRis~~--~~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        314 DVDMPSEDFCLKLLKETGVLLVPGNRFDL---EGHVRIGYC--CDTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             CCCCCHHHHHHHHHHhcCEEEECccccCC---CCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence            65456788999987788999999986542   469999998  46889999999999988764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=241.82  Aligned_cols=336  Identities=20%  Similarity=0.178  Sum_probs=238.4

Q ss_pred             CCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         16 SNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        16 ~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      +|++++||.+   +.+++  ||++.+++.+++++.....   ..  ...+...++.+++.+..+.++++|++||++|++.
T Consensus        34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~---~~--~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~  108 (395)
T PRK03715         34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPS---PA--FYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEG  108 (395)
T ss_pred             CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccccc---cc--ccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHH
Confidence            7888999964   66776  7999999999998743321   11  1246677888888877667789999999999999


Q ss_pred             chhhccc------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         91 TLFTLGK------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        91 ~l~~l~~------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      +++.+..      .++.+.|..+..+|.++..+++..+........                .|.               
T Consensus       109 Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~----------------~~~---------------  157 (395)
T PRK03715        109 AIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIF----------------APQ---------------  157 (395)
T ss_pred             HHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCC----------------CCC---------------
Confidence            9987642      123456777777888777776655432110000                000               


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                                                           -..+...+.+|
T Consensus       158 ---------------------------------------------------------------------~~~~~~~~~~d  168 (395)
T PRK03715        158 ---------------------------------------------------------------------VPGFPKAELND  168 (395)
T ss_pred             ---------------------------------------------------------------------CCCceeeCCch
Confidence                                                                                 00011223456


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCccC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLHN  319 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~~  319 (514)
                      ++.+++.+.    +++++|+++++++..|...+    +++|+++|++||+++|+||+++ | +|+.|.++ .+..++  .
T Consensus       169 ~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G-~GRtG~~~a~~~~gv--~  240 (395)
T PRK03715        169 IASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-G-CGRTGTLFAYELSGI--E  240 (395)
T ss_pred             HHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCcchhhHhhcCC--C
Confidence            777776664    45899999999999999877    9999999999999999999999 4 35555443 244554  7


Q ss_pred             ceEEEcCCcccccC--CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        320 MDIISGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       320 ~di~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      +|++  +++|.+++  +.|++++++++.. +....  ...+++.+++.++++.++|+.+.++.   ++++.+++.+++++
T Consensus       241 PDi~--t~gK~lg~G~p~~av~~~~~i~~-~~~~~--~~~T~~g~pl~~aaala~L~~l~~~~---l~~~~~~~g~~l~~  312 (395)
T PRK03715        241 PDIM--TLGKGIGGGVPLAALLAKAEVAV-FEAGD--QGGTYNGNPLMTAVGVAVISQLLAPG---FLEGVRARGEYLKE  312 (395)
T ss_pred             Ccee--eehhhhhCCcceEEEEEcccccc-ccCCC--cCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Confidence            8988  88999986  2377788877752 22111  12244678999999999999886544   78888999999998


Q ss_pred             HHHhC----CCccccCCCcEEEEEeCCCccHHHHHHHHHHhC---CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        398 ELIQI----GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEK---GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       398 ~L~~~----g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~---GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      .|+++    ++..+...+.++.+.+.+. ....+.+.+. +.   ||++.+.       ..+.+|++++..+|++|++++
T Consensus       313 ~L~~l~~~~~i~~vrG~Glm~~i~l~~~-~~~~~~~~~~-~~~~~Gi~~~~~-------~~~~lR~~p~l~~t~~ei~~~  383 (395)
T PRK03715        313 KLLELSEERGLEGERGEGLLRALLLGKD-IGPQIVEKAR-DMQPDGLLLNAP-------RPNLLRFMPALNVTTEEIDQM  383 (395)
T ss_pred             HHHHHhhcCCcCeEEcceeEEEEEecCc-hHHHHHHHHH-hccCCCEEEeec-------CCCEEEEeCCcccCHHHHHHH
Confidence            88765    4433455677888988653 2334444443 44   9998632       235899999999999999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      +++|+++++++
T Consensus       384 ~~~l~~~l~~~  394 (395)
T PRK03715        384 IAMLRSVLDKL  394 (395)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.96  E-value=3.5e-27  Score=241.34  Aligned_cols=339  Identities=19%  Similarity=0.195  Sum_probs=233.1

Q ss_pred             ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccc
Q psy16848         18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDST   91 (514)
Q Consensus        18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~   91 (514)
                      ...+|+..++  +...+.+.+++.+.+..   ....+....|..++.+.+.+.+.+..|    .+..++++++++++..+
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~  105 (384)
T PRK06348         29 PDIIDLSLGDPDLITDESIINAAFEDAKK---GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLA  105 (384)
T ss_pred             CCcEEcCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHH
Confidence            3568885433  33345666655544432   122222333445555666666554433    23445455556677778


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.++|......++..|++++.++..+.+                                     
T Consensus       106 ~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~-------------------------------------  146 (384)
T PRK06348        106 LQSILD--PGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEED-------------------------------------  146 (384)
T ss_pred             HHHhcC--CCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCc-------------------------------------
Confidence            777765  99999999999998888777777766654321000                                     


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                             +.                                             ..|++.+++.
T Consensus       147 -----------------------~~---------------------------------------------~~d~~~l~~~  158 (384)
T PRK06348        147 -----------------------GF---------------------------------------------QINVKKLEAL  158 (384)
T ss_pred             -----------------------CC---------------------------------------------cCCHHHHHHh
Confidence                                   00                                             0133444443


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      +    .++++++++++|+||||.+++   +++|.++|+++++++|+||+|.....+....++....+ ..+.+++++|||
T Consensus       159 ~----~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~SfS  233 (384)
T PRK06348        159 I----TSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAG-MPERTITFGSFS  233 (384)
T ss_pred             h----CcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCC-CcCcEEEEecch
Confidence            3    345788999999999999999   78899999999999999999995443322222222222 135789999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CC
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GF  404 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  404 (514)
                      |.++.+|   ||+++++++++.+.......  ..+.+.+.+.++..+++.. +.+.+++++.++++++++.+.|++. ++
T Consensus       234 K~~~l~GlRiG~~v~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~~~  310 (384)
T PRK06348        234 KDFAMTGWRIGYVIAPDYIIETAKIINEGI--CFSAPTISQRAAIYALKHR-DTIVPLIKEEFQKRLEYAYKRIESIPNL  310 (384)
T ss_pred             hccCCccccceeeecCHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999668   99999999998887766544  2356788888888887643 3456778888899999999999887 66


Q ss_pred             ccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        405 PVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       405 ~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .+..+.++ ++++.++. ..+..++++.+++++||.+.|+..+. ..+.+++|++++  .+++++++++++|+++
T Consensus       311 ~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~-~~~~~~iRi~~~--~~~~~l~~al~~l~~~  382 (384)
T PRK06348        311 SLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFG-ESGEGYIRLACT--VGIEVLEEAFNRIEKM  382 (384)
T ss_pred             eeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhc-cCCCCeEEEEec--CCHHHHHHHHHHHHhh
Confidence            66666666 45778763 45678899988657899999998754 334689999997  5788999999988753

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.96  E-value=7.4e-27  Score=239.43  Aligned_cols=343  Identities=17%  Similarity=0.152  Sum_probs=237.9

Q ss_pred             ceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEecccccccc
Q psy16848         18 RVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~~   90 (514)
                      ..++|+..  .++...+.+.+++.+.+....   ..+....|..++.+.+.+.+...++.     +..++++++++++..
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~  106 (391)
T PRK07309         30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQ---SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA  106 (391)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence            45788854  334446678888887776421   11222334455555565555544442     235555556778888


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|......++..|.+++.++... +                                    
T Consensus       107 ~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~------------------------------------  147 (391)
T PRK07309        107 SLTAILE--PGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-N------------------------------------  147 (391)
T ss_pred             HHHHhcC--CCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-c------------------------------------
Confidence            8887765  999999999999998877777777665543210 0                                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                              +.                                             ..|.+.+++
T Consensus       148 ------------------------~~---------------------------------------------~~d~~~l~~  158 (391)
T PRK07309        148 ------------------------DF---------------------------------------------VLTPEMLEK  158 (391)
T ss_pred             ------------------------CC---------------------------------------------cCCHHHHHH
Confidence                                    00                                             013445555


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++. .++++++++++|+||||.+++   +++|.++|++|++++|+|++|..... +....++...   ..+..++++|
T Consensus       159 ~~~~~-~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~---~~~~~i~~~S  234 (391)
T PRK07309        159 AILEQ-GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY---LPDQTILING  234 (391)
T ss_pred             Hhhcc-CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh---ccCCEEEEec
Confidence            55432 235789999999999999998   79999999999999999999995443 3222222221   2356899999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      |||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++...++.. .......++.++++++++.+.|++.+
T Consensus       235 ~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (391)
T PRK07309        235 LSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYL--VTAATTMAQFAAVEALTNG-KDDALPMKKEYIKRRDYIIEKMTDLG  311 (391)
T ss_pred             ChhhccCccceeEEEEeCHHHHHHHHHHHhhc--ccCCChHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999998768   99999999999887654322  2356677777777777632 12234567788889999999999888


Q ss_pred             CccccCCCc-EEEEEeCCCc--cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPSH-IIPIKIGNPA--LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       404 ~~~~~~~~~-~~~i~l~~~~--~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +.+..+.++ +++++++...  +..++++.+++++||.+.|+..+. ..+++++|++++.  +.+++++++++|++++++
T Consensus       312 ~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-~~~~~~iRi~~~~--~~~~l~~~i~~l~~~~~~  388 (391)
T PRK07309        312 FKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFG-PYGEGYVRLSYAA--SMETIKEAMKRLKEYMEE  388 (391)
T ss_pred             CeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            877767655 4567776532  457788877668899999998643 3356899999983  688999999999998876


Q ss_pred             c
Q psy16848        481 L  481 (514)
Q Consensus       481 ~  481 (514)
                      .
T Consensus       389 ~  389 (391)
T PRK07309        389 H  389 (391)
T ss_pred             h
Confidence            4

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.96  E-value=4.8e-27  Score=241.38  Aligned_cols=344  Identities=18%  Similarity=0.196  Sum_probs=237.9

Q ss_pred             CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~   89 (514)
                      .+..++|+..++..  .++++.+++.+.+......   +....|...+.+++.+.+.+.+|.    +..++++++++++.
T Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~  105 (393)
T PRK05764         29 QGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTK---YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALY  105 (393)
T ss_pred             ccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCC---cCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHH
Confidence            45667888654433  2578888888877642211   111223334444444444433342    23455555567888


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.+.|......++..|.+++.++....+.                     |            
T Consensus       106 ~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~---------------------~------------  150 (393)
T PRK05764        106 NAFMALLD--PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENG---------------------F------------  150 (393)
T ss_pred             HHHHHhcC--CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccC---------------------C------------
Confidence            78877766  999999999999888777777777766554310000                     0            


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              ..|.+.++
T Consensus       151 ------------------------------------------------------------------------~~d~~~l~  158 (393)
T PRK05764        151 ------------------------------------------------------------------------KLTVEQLE  158 (393)
T ss_pred             ------------------------------------------------------------------------cCCHHHHH
Confidence                                                                                    00233444


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+    .++++++++++|+||||.+++   +++|.++|++||+++|+||+|.....+ ....++........+.+++++
T Consensus       159 ~~l----~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~  234 (393)
T PRK05764        159 AAI----TPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVN  234 (393)
T ss_pred             Hhh----CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEe
Confidence            433    345789999999999999998   789999999999999999999844432 222222222111235789999


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ||||.++.+|   ||+++++++++.+.......  ..+.++..+.++...++. ...++++.+++++++++.+.+.|++.
T Consensus       235 s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (393)
T PRK05764        235 GFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHS--TSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEI  311 (393)
T ss_pred             cCcccccCccceeEEEecCHHHHHHHHHHHhhc--ccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999768   99999999999887665443  336677888888877763 23556778888899999999999998


Q ss_pred             -CCccccCCCc-EEEEEeCCCc-----cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        403 -GFPVEHTPSH-IIPIKIGNPA-----LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       403 -g~~~~~~~~~-~~~i~l~~~~-----~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                       ++.+..+.++ ++++.++...     +..++.+.+++++||.+.++..+..   .+++|++++  .+++++++++++|.
T Consensus       312 ~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~vRis~~--~~~~~~~~~i~~l~  386 (393)
T PRK05764        312 PGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA---PGYVRLSYA--TSLEDLEEGLERIE  386 (393)
T ss_pred             CCCcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC---CCEEEEEec--CCHHHHHHHHHHHH
Confidence             8887777665 5556665432     2478888887678999999876432   579999998  47999999999999


Q ss_pred             HHHHHc
Q psy16848        476 AVWKSL  481 (514)
Q Consensus       476 ~~l~~~  481 (514)
                      +++++.
T Consensus       387 ~~~~~~  392 (393)
T PRK05764        387 RFLESL  392 (393)
T ss_pred             HHHHhh
Confidence            988753

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=244.29  Aligned_cols=338  Identities=21%  Similarity=0.231  Sum_probs=243.7

Q ss_pred             CCceeeecccCCCC------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQYK------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      +|+.++||.++ |.      .||+|.+++.++++.+....   +.+  ..+..+++++.++++++.++++|++|||+|++
T Consensus        29 dg~~~lD~~~~-~~~~~~Gh~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e  102 (400)
T PTZ00125         29 EGKKYYDFLSA-YSAVNQGHCHPKILAALINQAQKLTLTS---RAF--YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGE  102 (400)
T ss_pred             CCCEEEEcccC-HhhccCCcCCHHHHHHHHHHHHhccccc---ccc--cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHH
Confidence            67788888663 33      38999999999999865432   111  24678899999999998899999999999999


Q ss_pred             cchhhcccc---------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         90 STLFTLGKM---------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        90 ~~l~~l~~~---------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      .++..+...         ++...|..+..+|..+..++...+........                              
T Consensus       103 ~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~------------------------------  152 (400)
T PTZ00125        103 TALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNF------------------------------  152 (400)
T ss_pred             HHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccC------------------------------
Confidence            999876410         13446677778888877666554321100000                              


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                            ......+..+
T Consensus       153 ----------------------------------------------------------------------~~~~~~~~~~  162 (400)
T PTZ00125        153 ----------------------------------------------------------------------GPFVPGFELV  162 (400)
T ss_pred             ----------------------------------------------------------------------CCCCCCceEe
Confidence                                                                                  0000123445


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc-cccC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI-GERD  314 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~-~~~~  314 (514)
                      +.+|.+.+++.++   .+++++|++++++||+|.+.|    +++|.++|++||+++|+||+|+ +|..|.   .+ ....
T Consensus       163 ~~~d~~~le~~l~---~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~---~~~~~~~  236 (400)
T PTZ00125        163 DYNDVEALEKLLQ---DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK---LLAHDHE  236 (400)
T ss_pred             CCCCHHHHHHHhC---CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hhHHHhc
Confidence            6678888888885   246899999999999999998    9999999999999999999997 444432   22 1223


Q ss_pred             CCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      +.  .+|++  +++|++++.+   |++++++++.+.+.......  +.+.++..++++.++++.+.+++   ..++.+++
T Consensus       237 ~~--~pd~~--~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~~aa~~~l~~i~~~~---~~~~~~~~  307 (400)
T PTZ00125        237 GV--KPDIV--LLGKALSGGLYPISAVLANDDVMLVIKPGEHGS--TYGGNPLACAVAVEALEVLKEEK---LAENAQRL  307 (400)
T ss_pred             CC--CCCEE--EEcccccCCCcCcEEEEEcHHHHhhccCCCCCC--CCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence            33  67888  6789997633   88999999998876543333  34678899999999998876544   45666677


Q ss_pred             HHHHHHHHHhC----CC-ccccCCCcEEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        392 VAYLRNELIQI----GF-PVEHTPSHIIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       392 ~~~l~~~L~~~----g~-~~~~~~~~~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      .+++++.|+++    +. ....+.+.++++.++.  .....++++.|+ ++||.+.++       +.+++|++++..+++
T Consensus       308 ~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-------~~~~lRi~~~~~~~~  379 (400)
T PTZ00125        308 GEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLK-ENGLLAKPT-------HDNIIRFAPPLVITK  379 (400)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccCcchHHHHHHHHHH-HCCeEEeec-------CCCEEEEECCccCCH
Confidence            77777777664    22 1124456677777763  345678899996 899999753       246899999988999


Q ss_pred             HHHHHHHHHHHHHHHHcC
Q psy16848        465 EMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~~  482 (514)
                      +++++++++|+++++++.
T Consensus       380 ~~i~~~l~~l~~~l~~~~  397 (400)
T PTZ00125        380 EQLDQALEIIKKVLKSFD  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999988763

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.96  E-value=3.3e-27  Score=246.40  Aligned_cols=364  Identities=15%  Similarity=0.118  Sum_probs=243.2

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEecccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYV   86 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~   86 (514)
                      .+|+.|+||.+   +.++|  ||+|++++.+++++.....+   ......+...++++++.+.+.   .++++|++||++
T Consensus        86 ~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~---~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsE  162 (504)
T PLN02760         86 INGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHS---FWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSE  162 (504)
T ss_pred             CCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceec---ccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHH
Confidence            37788888865   56665  79999999999998554221   112345778899999988853   346788999999


Q ss_pred             ccccchhhccc-------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         87 ANDSTLFTLGK-------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        87 a~~~~l~~l~~-------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      |++.|++....       .++.+.|..+..+|.+++.+++..+.+......             ....+.+      .+ 
T Consensus       163 A~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~-------------~~~~~~~------~~-  222 (504)
T PLN02760        163 ANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKF-------------DLPAPFV------LH-  222 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCC-------------CCCCCCc------EE-
Confidence            99999986631       123456666777777776666655432210000             0000000      00 


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                                                  +..|..+...+.  ......
T Consensus       223 ------------------------------------------------------------~~~p~~~~~~~~--~~~~~~  240 (504)
T PLN02760        223 ------------------------------------------------------------TDCPHYWRFHLP--GETEEE  240 (504)
T ss_pred             ------------------------------------------------------------eCCCcccccCCC--CCcHHH
Confidence                                                                        000000000000  000000


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccC
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERD  314 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~  314 (514)
                      +.....+.+++.+.+...+++++|++++++...|.+.|    +++|+++|++||+++|+||+++ +|++|..+  ..+.+
T Consensus       241 ~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~--a~e~~  318 (504)
T PLN02760        241 FSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF--GCDKY  318 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhh--HHHhc
Confidence            00001234555554433456899999999999999988    9999999999999999999996 88887633  23455


Q ss_pred             CCccCceEEEcCCcccccC---CCeEEEecHHHHHHHHhhc-----CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYA-----AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                      ++  .||++  +++|++|+   +-|.+++++++.+.+....     ...+++++.+|+.++++.++|+.+.++.   +.+
T Consensus       319 gv--~PDiv--tlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~---l~~  391 (504)
T PLN02760        319 NI--KPDLV--SLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERN---IPE  391 (504)
T ss_pred             CC--CCcEE--EecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCC---HHH
Confidence            55  79998  99999976   2377888999988875421     1123355789999999999999987655   788


Q ss_pred             HHHHHHHHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848        387 KHQDIVAYLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGE  451 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~  451 (514)
                      +.+++.+++++.|+++ ..++   +...|.++.+++.+..           ....+.+.++ ++||.+.+.        .
T Consensus       392 ~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~--------g  462 (504)
T PLN02760        392 HVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECK-KRGMLVRVA--------G  462 (504)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHH-hCCcEEEec--------C
Confidence            8888888888888775 2222   2345667787774321           1345777885 899998631        2


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.+|++++..+|++|+|+++++++++++++
T Consensus       463 ~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        463 DNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999998776

>PRK09148 aminotransferase; Validated

Probab=99.96  E-value=6.4e-27  Score=240.82  Aligned_cols=348  Identities=12%  Similarity=0.075  Sum_probs=239.9

Q ss_pred             cCCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecc-ccc
Q psy16848         15 KSNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSC-YVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sG-t~a   87 (514)
                      ..|..++|+..++.  ...+.+.+++.+.+...  ....+....|..++.+.+.+.+.+.+|.    +..+++|+| +++
T Consensus        27 ~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a  104 (405)
T PRK09148         27 AAGADIIDLGMGNPDLPTPQHIVDKLCETAQDP--RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG  104 (405)
T ss_pred             hcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCc--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence            35677899965432  23567777777665421  1122223345556666666666555453    324555555 566


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.+++.  +||.|+++.++|......++..|.+++.++..+-                                  
T Consensus       105 l~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~----------------------------------  148 (405)
T PRK09148        105 FANMAQAITA--PGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPD----------------------------------  148 (405)
T ss_pred             HHHHHHHhcC--CCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCC----------------------------------
Confidence            7777777765  9999999999998887666666666655443100                                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                ....+.
T Consensus       149 --------------------------------------------------------------------------~~~~~~  154 (405)
T PRK09148        149 --------------------------------------------------------------------------EEFFPA  154 (405)
T ss_pred             --------------------------------------------------------------------------CCCccC
Confidence                                                                                      001122


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~  323 (514)
                      +++.++.. .++++++++++|+||||.+++   +++|.++|++||+++|+||+|.....+. ...++..... ..+..++
T Consensus       155 l~~~~~~~-~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~-~~~~~i~  232 (405)
T PRK09148        155 LERAVRHS-IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPG-AKDVTVE  232 (405)
T ss_pred             HHHHHhhc-cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCC-ccCcEEE
Confidence            33333322 246789999999999999999   5889999999999999999999543322 1111222111 1245678


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++||||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++...++.. +.++++.++.++++++.+.+.|+
T Consensus       233 ~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~--~~~~~~~~q~~~~~~L~~~-~~~~~~~~~~~~~~r~~l~~~L~  309 (405)
T PRK09148        233 FTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYL--DYGAFTPIQVAATAALNGP-QDCIAEMRELYKKRRDVLVESFG  309 (405)
T ss_pred             EeccccccCCcchheeeeeCCHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999778   99999999999888765443  2245677777777777632 35677888999999999999999


Q ss_pred             hCCCccccCCC-cEEEEEeCCC---ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHTPS-HIIPIKIGNP---ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       401 ~~g~~~~~~~~-~~~~i~l~~~---~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.++.+..+.+ .+++++++..   ....++++.+++++||.+.|+..+. ..+.+++|++++  .+.+++++++++|.+
T Consensus       310 ~~~~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-~~~~~~~Ri~~~--~~~~~l~~al~~l~~  386 (405)
T PRK09148        310 RAGWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFG-EHGDGYVRIALV--ENEQRIRQAARNIKR  386 (405)
T ss_pred             HcCCccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            98887655544 4777887653   2356888887667899999998643 334679999997  578999999999999


Q ss_pred             HHHHcC
Q psy16848        477 VWKSLD  482 (514)
Q Consensus       477 ~l~~~~  482 (514)
                      ++.+.+
T Consensus       387 ~l~~~~  392 (405)
T PRK09148        387 FLSSAD  392 (405)
T ss_pred             HHHHHH
Confidence            887653

>PRK07683 aminotransferase A; Validated

Probab=99.96  E-value=9.9e-27  Score=238.17  Aligned_cols=341  Identities=18%  Similarity=0.176  Sum_probs=233.4

Q ss_pred             ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEecccccccc
Q psy16848         18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~   90 (514)
                      ..++|+..+.  +..++.+.+++.+.+.....   .+....|..++.+++.+.+.+..|.    + ..++++++++|+..
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~  104 (387)
T PRK07683         28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYT---SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI  104 (387)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence            4578886543  22356788888888774221   1112234445555555555443342    2 34545555778887


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|......++..|++++.++.+                                       
T Consensus       105 ~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~---------------------------------------  143 (387)
T PRK07683        105 AFRTILE--PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR---------------------------------------  143 (387)
T ss_pred             HHHHhCC--CCCEEEEcCCCccchHHHHHHcCCEEEEeecC---------------------------------------
Confidence            8777765  99999999999888776666666665544321                                       


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                             .+++....+
T Consensus       144 -----------------------------------------------------------------------~~~~~~~~~  152 (387)
T PRK07683        144 -----------------------------------------------------------------------STGFRLTAE  152 (387)
T ss_pred             -----------------------------------------------------------------------cccCCCCHH
Confidence                                                                                   111211122


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      .+.+...++++++++++|+||||.+++   +++|.++|+++|+++|+||+|.....+....++....+ ..+.+++++||
T Consensus       153 ~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~  231 (387)
T PRK07683        153 ALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPE-MREKTIVINGL  231 (387)
T ss_pred             HHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccC-CcCCeEEEeec
Confidence            233333346789999999999999998   78999999999999999999995543333223332211 23568999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      ||.+|.+|   ||+++++++++.+..... +. ..+.+.+.+.++...|+.. ..+.++.+++++++++.+.+.|.+.++
T Consensus       232 SK~~~~pGlRiG~i~~~~~l~~~~~~~~~-~~-~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (387)
T PRK07683        232 SKSHSMTGWRIGFLFAPSYLAKHILKVHQ-YN-VTCASSISQYAALEALTAG-KDDAKMMRHQYKKRRDYVYNRLISMGL  308 (387)
T ss_pred             cccccCccceeEEEEcCHHHHHHHHHHHH-hc-cCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999668   999999999988876542 21 1245566777777777532 245667788889999999999998887


Q ss_pred             ccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        405 PVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       405 ~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      .+..+.++ ++++.++. ..+..+++..+++++||.+.|+..+. ..+++++|++++.  +++++.+++++|.+++++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~-~~~~~~~Ri~~~~--~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        309 DVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFS-EYGEGYVRLSYAY--SIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             cccCCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            77667666 44455553 34466788776668999999988654 3346899999983  788999999999998764

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.96  E-value=3.3e-27  Score=243.46  Aligned_cols=344  Identities=20%  Similarity=0.217  Sum_probs=235.7

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhC-CCCCCcCc-ccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchh
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFG-TGAGGTRN-ISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLF   93 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~   93 (514)
                      .|.|.++... .++.+.+++.+.++... ....+... .....+..+++++.+++++|.+   ..++++|+|+++..++.
T Consensus        20 ~yld~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~   98 (403)
T TIGR01979        20 VYLDSAATSQ-KPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAY   98 (403)
T ss_pred             EEEeCccccC-CCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence            5566655442 35678888888776532 21111111 1112346778999999999965   34555556667666665


Q ss_pred             hcc--ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         94 TLG--KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        94 ~l~--~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      ++.  .+.+||.|++++++|.+....++                                                    
T Consensus        99 ~~~~~~~~~g~~vl~~~~~~~s~~~~~~----------------------------------------------------  126 (403)
T TIGR01979        99 SWGDSNLKAGDEIVISEMEHHANIVPWQ----------------------------------------------------  126 (403)
T ss_pred             HhhhhcCCCCCEEEECcchhhHHHHHHH----------------------------------------------------
Confidence            542  13489999999999988653211                                                    


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLTQ  250 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~  250 (514)
                                                                              ......|++++.++. .+.....+
T Consensus       127 --------------------------------------------------------~~~~~~g~~~~~v~~~~~~~~~~~  150 (403)
T TIGR01979       127 --------------------------------------------------------LLAERTGATLKFIPLDDDGTLDLD  150 (403)
T ss_pred             --------------------------------------------------------HHHHhcCcEEEEEecCCCCCCCHH
Confidence                                                                    111222334444431 11111223


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+++..+++++++++++++|++|...|+++|.++|+++|+++|+|++|+.|..        +......++|++++|+||+
T Consensus       151 ~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~--------~~~~~~~~~d~~~~s~~K~  222 (403)
T TIGR01979       151 DLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM--------PVDVQALDCDFYVFSGHKM  222 (403)
T ss_pred             HHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCcc--------ccCccccCCCEEEEecccc
Confidence            33333356789999999999999999999999999999999999999986643        1111134689999999999


Q ss_pred             ccCCC-eEEEecHHHHHHHHhhcCc------------------eEec-cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        331 FGNIG-GYIVGTKNFIDTIRSYAAG------------------FIFT-TSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       331 lg~~G-G~l~~~~~~~~~l~~~~~~------------------~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                      +|+.| |+++.++++++.+.+...+                  ..+. .+.+...+.++.++++++.+.+.++++++..+
T Consensus       223 ~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~  302 (403)
T TIGR01979       223 YGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHE  302 (403)
T ss_pred             cCCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            99878 9999998887766432111                  0011 23455667777888887766677888999999


Q ss_pred             HHHHHHHHHHhC-CCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeC
Q psy16848        391 IVAYLRNELIQI-GFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPT  459 (514)
Q Consensus       391 ~~~~l~~~L~~~-g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~  459 (514)
                      +.+++.+.|+++ ++++..+.     ++++.+.++. .+..++.+.| +++||.++++..|..+     ....++|++++
T Consensus       303 l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~  380 (403)
T TIGR01979       303 LTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEG-VHPHDVGTIL-DEEGIAVRSGHHCAQPLMRRFGVPATCRASFY  380 (403)
T ss_pred             HHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCC-cCHHHHHHHH-hhCCEEEcchhhhhHHHHHHhCCCCEEEEEec
Confidence            999999999887 77765432     5677787764 3456788777 5999999876643211     12468999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHc
Q psy16848        460 PFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .++|++|+++++++|+++++.+
T Consensus       381 ~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       381 IYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.96  E-value=9e-27  Score=239.36  Aligned_cols=343  Identities=13%  Similarity=0.114  Sum_probs=236.4

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-----cEEEEecccc-c
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-----AGLVFTSCYV-A   87 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~i~~~sGt~-a   87 (514)
                      .|..++|+..+.  +...|.+.+++.+.+....  ..++. ..|..++.+.+.+.+.+.+|.+     ..|++|+|++ +
T Consensus        42 ~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~--~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a  118 (410)
T PRK06290         42 PDMELIDMGVGEPDEMADESVVEVLCEEAKKPE--NRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA  118 (410)
T ss_pred             CCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCC--CCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence            355688986543  3346678888777664311  11121 2455666666666666554532     3577777764 5


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.++..  +||.|+++.+.|......++..|++++.++....                     +.|          
T Consensus       119 l~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~---------------------~~~----------  165 (410)
T PRK06290        119 LAMLPSCFIN--PGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEE---------------------NNF----------  165 (410)
T ss_pred             HHHHHHHhCC--CCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCC---------------------cCC----------
Confidence            6666667765  9999999999998877777766766665443100                     000          


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                ..|++.
T Consensus       166 --------------------------------------------------------------------------~~d~~~  171 (410)
T PRK06290        166 --------------------------------------------------------------------------LPDLDS  171 (410)
T ss_pred             --------------------------------------------------------------------------cCCHHH
Confidence                                                                                      003333


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      +++.+    .++++++++++|+||||.+++   +++|.++|++||++||+||+|.....+....++..... ..+.++++
T Consensus       172 l~~~~----~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~-~~~~~I~i  246 (410)
T PRK06290        172 IPKDI----KEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPG-AKEVGVEI  246 (410)
T ss_pred             HHHhh----cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCC-ccccEEEE
Confidence            43333    335899999999999999999   68899999999999999999995443322222222221 23567999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      .||||.+|.+|   ||+++++++++.+......+  ..+.+.+.+.++..+++.  .+..++.++.++++++.+.+.|++
T Consensus       247 ~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~--~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~  322 (410)
T PRK06290        247 HSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNN--DSGQFIAIQKAGIYALDH--PEITEKIREKYSRRLDKLVKILNE  322 (410)
T ss_pred             eechhhcCCchhheEeEEeCHHHHHHHHHHHhcc--ccCCcHHHHHHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998778   99999999999888766444  334455677777777763  245677888999999999999999


Q ss_pred             CCCccccCCCcE-EEEEeCCC-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC-CCCHHHHHHHHH
Q psy16848        402 IGFPVEHTPSHI-IPIKIGNP-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP-FHTREMIDKFVT  472 (514)
Q Consensus       402 ~g~~~~~~~~~~-~~i~l~~~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~id~~~~  472 (514)
                      .|+.+..+.+++ +++.+++.       .+..++++.|+++.++.+.|+..+     .+++|++++. ..++++.+++++
T Consensus       323 ~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~-----~~~lRi~~~~~~~~~~~~~~~~~  397 (410)
T PRK06290        323 VGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA-----GHFLRFSVTFEAKDEEEEDRILE  397 (410)
T ss_pred             CCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccc-----cCeEEEEEEcccccccchhHHHH
Confidence            988777676664 45777653       256789999974445666665432     2589999973 346789999999


Q ss_pred             HHHHHHHHcC
Q psy16848        473 DLLAVWKSLD  482 (514)
Q Consensus       473 ~l~~~l~~~~  482 (514)
                      +|++.+.++.
T Consensus       398 ~l~~~~~~~~  407 (410)
T PRK06290        398 EIKRRLSDVE  407 (410)
T ss_pred             HHHHHHhhcc
Confidence            9999988764

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1e-26  Score=239.41  Aligned_cols=349  Identities=17%  Similarity=0.126  Sum_probs=237.0

Q ss_pred             CCceeeecccCCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccc-ccc
Q psy16848         16 SNRVTCRLSSVQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCY-VAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt-~a~   88 (514)
                      .+..++|+..++...  .+.+.+++.+.+...  ...++....|..++.+.+++++.+.+|.    +..+++|+|+ +++
T Consensus        31 ~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al  108 (403)
T PRK08636         31 AGEDIIDFSMGNPDGPTPQHIIDKLCESAQKP--KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGY  108 (403)
T ss_pred             cCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCC--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHH
Confidence            456688886544332  344555555544321  1122223345566777777777665552    2246566665 567


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.+++.  +||.|+++.++|......++..|.+++.++.. .+.                                 
T Consensus       109 ~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~---------------------------------  152 (403)
T PRK08636        109 VHLVQAITN--PGDVAIVPDPAYPIHSQAFILAGGNVHKMPLE-YNE---------------------------------  152 (403)
T ss_pred             HHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEecc-ccc---------------------------------
Confidence            778788876  99999999999999888888888877665431 000                                 


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH-
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH-  247 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~-  247 (514)
                                                +.+                                             -|.+. 
T Consensus       153 --------------------------~~~---------------------------------------------~d~~~l  161 (403)
T PRK08636        153 --------------------------DFE---------------------------------------------LDEDQF  161 (403)
T ss_pred             --------------------------cCc---------------------------------------------cChhhh
Confidence                                      000                                             02222 


Q ss_pred             ---HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCc
Q psy16848        248 ---LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNM  320 (514)
Q Consensus       248 ---l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~  320 (514)
                         +++.+++. ..+++++++++||||||.+++   +++|.++|++|++++|+||+|...... ....++..... ..+.
T Consensus       162 ~~~l~~~~~~~-~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~-~~~~  239 (403)
T PRK08636        162 FENLEKALRES-SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG-AKDV  239 (403)
T ss_pred             hhHHHHHHhhc-cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC-cccc
Confidence               23333322 245889999999999999999   689999999999999999999944332 22222222221 1245


Q ss_pred             eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      .++++||||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++..+++.. ..+++++++.++++++.+.+
T Consensus       240 ~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~--~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  316 (403)
T PRK08636        240 AVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSWL--DYGMFTPIQVAATIALDGD-QSCVEEIRETYRKRRDVLIE  316 (403)
T ss_pred             EEEEEecccccCCccceeeeeeCCHHHHHHHHHHHHHh--cccCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            677899999998768   99999999999887655432  2244555565555555422 34667788889999999999


Q ss_pred             HHHhCCCccccCC-CcEEEEEeCCC---ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848        398 ELIQIGFPVEHTP-SHIIPIKIGNP---ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD  473 (514)
Q Consensus       398 ~L~~~g~~~~~~~-~~~~~i~l~~~---~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~  473 (514)
                      .|++.++.+..+. +.++++++++.   .+..+++..+++++||.+.|+..+. ..+.+++|++++  .+++++++++++
T Consensus       317 ~L~~~~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~-~~~~~~iRi~~~--~~~~~l~~~~~r  393 (403)
T PRK08636        317 SFANAGWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFG-EYGDEYVRIALI--ENENRIRQAARN  393 (403)
T ss_pred             HHHHCCCcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhC-cCCCCeEEEEec--CCHHHHHHHHHH
Confidence            9999887766554 45777888753   2357888887667899999998643 334679999997  578999999999


Q ss_pred             HHHHHHHc
Q psy16848        474 LLAVWKSL  481 (514)
Q Consensus       474 l~~~l~~~  481 (514)
                      |+++++..
T Consensus       394 l~~~l~~~  401 (403)
T PRK08636        394 IKKFLKEL  401 (403)
T ss_pred             HHHHHHhh
Confidence            99988763

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.96  E-value=6.4e-27  Score=239.34  Aligned_cols=338  Identities=15%  Similarity=0.128  Sum_probs=235.3

Q ss_pred             eeecccCCCCC--ChhHHHHHHHHHHHhCCCCC-CcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcc
Q psy16848         20 TCRLSSVQYKV--PKGGRKCLGEALEKFGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLG   96 (514)
Q Consensus        20 ~~d~~~~~~~~--~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~   96 (514)
                      +|+++.-.-++  .+++.+++.+....++.+.. ..+...+..+..+++++.+++++|.+++++++|||+++..++.++.
T Consensus        20 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~   99 (387)
T PRK09331         20 FINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLC   99 (387)
T ss_pred             ccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc
Confidence            44444333333  46777777777654332211 2234445567899999999999999999999999999999998886


Q ss_pred             ccCCCceEEecCccchhhhhhhhcCCCCeeeccCC-ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848         97 KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus        97 ~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~-d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                      .  +||.|+++.+.|.+...+++..|++++.++.. +.                                          
T Consensus       100 ~--~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~------------------------------------------  135 (387)
T PRK09331        100 K--KGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYP------------------------------------------  135 (387)
T ss_pred             C--CCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCc------------------------------------------
Confidence            6  99999999999999999888888888776541 00                                          


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  255 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~  255 (514)
                                         +                                             ...|.+.+++.+++.
T Consensus       136 -------------------~---------------------------------------------~~~d~~~l~~~l~~~  151 (387)
T PRK09331        136 -------------------E---------------------------------------------YKITPEAYAEKIEEV  151 (387)
T ss_pred             -------------------C---------------------------------------------CCcCHHHHHHHHHHh
Confidence                               0                                             001445555555432


Q ss_pred             ---cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        256 ---DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       256 ---~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                         ..+++++|++++++|++|...|+++|.++|+++|+++|+|++|+.|...        ......+.|++++|+||+++
T Consensus       152 ~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~--------~~~~~~g~D~~~~s~~K~l~  223 (387)
T PRK09331        152 KEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMP--------VDGKKLGADFIVGSGHKSMA  223 (387)
T ss_pred             hhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcC--------CCHHHcCCCEEEeeCccccc
Confidence               1245889999999999999999999999999999999999999976541        22223468999999999997


Q ss_pred             CC-C-eEEEecHHHHHHHHhhcCceE------eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        333 NI-G-GYIVGTKNFIDTIRSYAAGFI------FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       333 ~~-G-G~l~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      ++ | |++++++++++.+......+.      ++.+.++....++.++++...+ .. +..++..++.+++.+.|+++ |
T Consensus       224 ~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~-~~-~~~~~~~~~~~~l~~~L~~l~g  301 (387)
T PRK09331        224 ASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVE-RV-KRWDEEVKKARWFVDELEKIEG  301 (387)
T ss_pred             CCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHhcCCC
Confidence            53 3 999999998888765433221      2223333344455555654422 22 24556677888999999999 8


Q ss_pred             Ccccc---CCCcEEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q psy16848        404 FPVEH---TPSHIIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVT  472 (514)
Q Consensus       404 ~~~~~---~~~~~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~  472 (514)
                      +++..   +..+++.+..+.        .....++.+.|. ++||...+      +.....+|+.. ..+|++|++++++
T Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~------~~~~~i~ri~~-~g~t~~di~~l~~  373 (387)
T PRK09331        302 FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELK-KRGIHGIK------PGATKEFKLST-YGLTWEQVEYVAD  373 (387)
T ss_pred             EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHH-HcCceEEc------cCCceEEEEEe-ccCCHHHHHHHHH
Confidence            88762   334566565441        112356888885 88998432      11234455555 4589999999999


Q ss_pred             HHHHHHHHcCC
Q psy16848        473 DLLAVWKSLDL  483 (514)
Q Consensus       473 ~l~~~l~~~~~  483 (514)
                      +|++++++.+.
T Consensus       374 aL~~i~~~~~~  384 (387)
T PRK09331        374 AFKEIAEKYGL  384 (387)
T ss_pred             HHHHHHHhcCC
Confidence            99999887654

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=7.2e-27  Score=237.88  Aligned_cols=326  Identities=17%  Similarity=0.165  Sum_probs=234.5

Q ss_pred             CCceeeecccCC-CCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccccc-cccc
Q psy16848         16 SNRVTCRLSSVQ-YKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYVA-NDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~a-~~~~   91 (514)
                      .+..++||.++. +++ +|.+.+++.+.+.... .+       +.. ...++++.++++++.+ +.+++++|++. +..+
T Consensus        30 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~y-------~~~-~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~  100 (367)
T PRK02731         30 GIADIIKLASNENPLGPSPKAIEAIRAAADELH-RY-------PDG-SGFELKAALAEKFGVDPERIILGNGSDEILELL  100 (367)
T ss_pred             CCCceEEecCCCCCCCCCHHHHHHHHHHHHhhc-CC-------CCC-cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence            346689998763 554 6788888888776421 11       111 1368999999999864 45777777665 4455


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++.+  +||.|+++.+.|.......+..|.+++.++..+                                       
T Consensus       101 ~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~---------------------------------------  139 (367)
T PRK02731        101 ARAYLG--PGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAKD---------------------------------------  139 (367)
T ss_pred             HHHhcC--CCCEEEEecCCHHHHHHHHHHcCCeEEEecccC---------------------------------------
Confidence            566655  999999999988766555555555555433210                                       


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                              .                                             ..|.+.+++.
T Consensus       140 ------------------------~---------------------------------------------~~~~~~l~~~  150 (367)
T PRK02731        140 ------------------------Y---------------------------------------------GHDLDAMLAA  150 (367)
T ss_pred             ------------------------C---------------------------------------------CCCHHHHHHH
Confidence                                    0                                             0133444444


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCC-CCCCccccCCCccCceEEEcCCc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      +    .++++++++++++||||.+++.+++.++++.+  |+++|+||+|....... ...++ .... ..+..++++|||
T Consensus       151 ~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~-~~~~-~~~~~i~~~S~S  224 (367)
T PRK02731        151 V----TPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGL-ELVA-KFPNVVVTRTFS  224 (367)
T ss_pred             h----CCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHH-HHHh-hcCCEEEEeeeh
Confidence            4    34688999999999999999999999998875  99999999998444322 11111 1111 124678999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |.+|.+|   ||+++++++++.+......+    ..+.+.+.++.+.++.  ...+++.++.++++++++.+.|++.|+.
T Consensus       225 K~~g~~G~RiG~l~~~~~~~~~l~~~~~~~----~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~  298 (367)
T PRK02731        225 KAYGLAGLRVGYGIAPPEIIDALNRVRQPF----NVNSLALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAELGLE  298 (367)
T ss_pred             HhhcCcccceeeeeCCHHHHHHHHHccCCC----CCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            9998767   99999999999888765443    4567777777777752  3456778888899999999999998877


Q ss_pred             cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.++.++++++.+++..+..++++.|. ++||.++++..+.   .++++|++++   +.+++++++++|+++++
T Consensus       299 ~~~~~g~~~~i~~~~~~~~~~~~~~L~-~~gI~v~~~~~~~---~~~~iRis~~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        299 YIPSVGNFILVDFDDGKDAAEAYQALL-KRGVIVRPVAGYG---LPNALRITIG---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHH-HCCEEEEeCCCCC---CCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence            766677888898866567889999995 8999999876532   2468999997   78999999999998764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.96  E-value=1.5e-26  Score=238.62  Aligned_cols=344  Identities=15%  Similarity=0.127  Sum_probs=233.5

Q ss_pred             CCceeeecccCC------CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----------CCcEE
Q psy16848         16 SNRVTCRLSSVQ------YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----------KEAGL   79 (514)
Q Consensus        16 ~g~~~~d~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~~~i   79 (514)
                      +|..++||....      +...+.+.+++.+.+...  ....+....|..++.+.+.+.+.+.++          .+..+
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~  108 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQ--ECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVV  108 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcC--CCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEE
Confidence            667889996433      345678888888877641  111222223444555555555443221          23345


Q ss_pred             EEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         80 VFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        80 ~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      +++++++++..++.++..  +||.|+++.++|......++..|.+++.++... +                         
T Consensus       109 it~G~~~al~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~-~-------------------------  160 (412)
T PTZ00433        109 LCSGVSHAILMALTALCD--EGDNILVPAPGFPHYETVCKAYGIEMRFYNCRP-E-------------------------  160 (412)
T ss_pred             EeCChHHHHHHHHHHhcC--CCCEEEEccCCcccHHHHHHHcCCEEEEEecCc-c-------------------------
Confidence            445556778888888865  999999999999888877777776665443210 0                         


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                        ...                                           
T Consensus       161 ----------------------------------~~~-------------------------------------------  163 (412)
T PTZ00433        161 ----------------------------------KDW-------------------------------------------  163 (412)
T ss_pred             ----------------------------------ccC-------------------------------------------
Confidence                                              000                                           


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCC
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDG  315 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~  315 (514)
                        ..|.+.+++.+    .++++++++++|+||||.+++   +++|.++|+++|+++|+||+|.....+ ....++.....
T Consensus       164 --~~d~~~l~~~~----~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  237 (412)
T PTZ00433        164 --EADLDEIRRLV----DDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT  237 (412)
T ss_pred             --cCCHHHHHHHh----ccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC
Confidence              00333443333    345889999999999999998   788899999999999999999844332 11112222211


Q ss_pred             CccCceEEEcCCcccccCCC---eEEEe------cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNIG---GYIVG------TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~G---G~l~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                        ....++++||||.+|.+|   ||+++      .+++++.+......   ..+.+.+.+.++...+....+.++++.++
T Consensus       238 --~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~q~a~~~~l~~~~~~~~~~~~~  312 (412)
T PTZ00433        238 --TVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML---VCGPCSVVQAALGEALLNTPQEHLEQIVA  312 (412)
T ss_pred             --CCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc---cCCCChHHHHHHHHHHhcCcHHHHHHHHH
Confidence              134689999999998778   99986      24566666554321   22567888888877776422456778889


Q ss_pred             HHHHHHHHHHHHHHhC-CCccccCCC-cEEEEEeCCC-----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        387 KHQDIVAYLRNELIQI-GFPVEHTPS-HIIPIKIGNP-----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~i~l~~~-----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      .++++++.+.+.|++. ++.+..+.+ .+++++++..     .+..++++.|++++||.+.++..+..   .+++|++++
T Consensus       313 ~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---~~~iRis~~  389 (412)
T PTZ00433        313 KLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM---PGFTRLTIS  389 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC---CCeEEEEec
Confidence            9999999999999886 777666654 4677777641     24678999987568999999886532   469999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        460 PFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .  .++++++++++|.+++++.+
T Consensus       390 ~--~~e~l~~al~~l~~~~~~~~  410 (412)
T PTZ00433        390 R--PVEVLREAVERIKAFCERHK  410 (412)
T ss_pred             C--CHHHHHHHHHHHHHHHHHhc
Confidence            3  58889999999999988654

>PLN02624 ornithine-delta-aminotransferase

Probab=99.96  E-value=5.6e-27  Score=244.36  Aligned_cols=340  Identities=19%  Similarity=0.236  Sum_probs=240.8

Q ss_pred             cCCceeeecccCCCC------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQYK------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~   88 (514)
                      .+|+.++||.++ |.      .||+|.+++.++++++.....  ..   ..+...+++++++++++.++++|++||++|+
T Consensus        72 ~dG~~ylD~~sg-~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~--~~---~~~~~~~la~~L~~~~~~~~~~f~~SGseA~  145 (474)
T PLN02624         72 PEGKKYLDFLSA-YSAVNQGHCHPKIIKALTEQAEKLTLSSR--AF---YNDKFPEFAEYLTSMFGYDMVLPMNTGAEGV  145 (474)
T ss_pred             CCCCEEEEcccc-hhcccCCCCCHHHHHHHHHHHHhcCCccc--cc---CCHHHHHHHHHHHhhcCCCeEEEeCChHHHH
Confidence            377788888653 22      289999999999998654321  21   2467788999999999988999999999999


Q ss_pred             ccchhhcccc---C----CCc--eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         89 DSTLFTLGKM---I----PGL--HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        89 ~~~l~~l~~~---~----~gd--~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      +.|++.....   +    ++.  .|.....+|.....++...+...... .                          |  
T Consensus       146 e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~-~--------------------------~--  196 (474)
T PLN02624        146 ETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATR-G--------------------------F--  196 (474)
T ss_pred             HHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccc-c--------------------------C--
Confidence            9999744321   0    123  34455566766665555433210000 0                          0  


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                      +                                       .....+..
T Consensus       197 --------------------------------~---------------------------------------~~~~~~~~  205 (474)
T PLN02624        197 --------------------------------G---------------------------------------PLLPGHLK  205 (474)
T ss_pred             --------------------------------C---------------------------------------CCCCCceE
Confidence                                            0                                       00012345


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccC
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERD  314 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~  314 (514)
                      ++++|.+.+++.++.. .+++++|++++++|++|.++|    +++|.++|++||+++|+||+|+ | +|+.|..+. ...
T Consensus       206 ~~~~d~~~l~~~l~~~-~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G-~GrtG~~~a~~~~  282 (474)
T PLN02624        206 VDFGDLDALEKIFEED-GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-G-LARTGKMLACDWE  282 (474)
T ss_pred             eCCCCHHHHHHHHHhC-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-cCcCcchhhHHhc
Confidence            6677888888888743 356899999999999999988    9999999999999999999998 3 233333222 223


Q ss_pred             CCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      +.  .+|++  +++|.+|+.+   |+++.++++.+.+.+.....  +.+.+++.++++.++|+.+.++.   +.++..++
T Consensus       283 ~i--~pDiv--~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~--T~~g~pl~~aaa~aaLe~l~~~~---l~~~~~~~  353 (474)
T PLN02624        283 EV--RPDVV--ILGKALGGGVIPVSAVLADKDVMLCIKPGEHGS--TFGGNPLASAVAMAALQVVQDEK---LAERSAKL  353 (474)
T ss_pred             CC--CCCEE--EecccccCCCCcceeeeecHHHHhHhccCCcCC--CCCCCHHHHHHHHHHHHHHHhch---HHHHHHHH
Confidence            33  68888  6899998733   88888888887775443333  44688999999999999875444   56667777


Q ss_pred             HHHHHHHHHhC--CCc----cccCCCcEEEEEeCCC----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        392 VAYLRNELIQI--GFP----VEHTPSHIIPIKIGNP----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       392 ~~~l~~~L~~~--g~~----~~~~~~~~~~i~l~~~----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      .+++++.|+++  .++    .+.+.+.++.+.+...    ....++++.|+ ++||.+.+.       +.+.+||+++..
T Consensus       354 ~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~-e~GV~v~p~-------~~~~lR~~p~l~  425 (474)
T PLN02624        354 GQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLK-ERGLLAKPT-------HDTIIRLAPPLS  425 (474)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHH-hCCeEEecC-------CCCEEEEECCcc
Confidence            77777777664  222    2345666777777542    23567888885 899999753       356899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~  480 (514)
                      +|++++++++++|++++++
T Consensus       426 ~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        426 ISEDELQECSKALSDVLEH  444 (474)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999998765

>PRK07550 hypothetical protein; Provisional

Probab=99.96  E-value=9.3e-27  Score=238.53  Aligned_cols=343  Identities=17%  Similarity=0.127  Sum_probs=235.3

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecc-ccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSC-YVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sG-t~a~~   89 (514)
                      .+...+|+..+.  +...+.+.+++.+.+.. . ....+....|..++.+.+++++.+..|.   +..+++++| ++++.
T Consensus        27 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~  104 (386)
T PRK07550         27 ADGPLIDLSQAVPGYPPPPELLRALAEAAAD-P-AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFW  104 (386)
T ss_pred             cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhC-c-CCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence            455688996544  33356788877776642 1 1122223346667777777777766552   234556666 55777


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++.+  +||.|+++.+.|......++..|.+++.++....+                                   
T Consensus       105 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-----------------------------------  147 (386)
T PRK07550        105 AAMVTLAG--AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGP-----------------------------------  147 (386)
T ss_pred             HHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCc-----------------------------------
Confidence            77777765  99999999999987776666666665544321000                                   


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                               +.                                             ..|.+.++
T Consensus       148 -------------------------~~---------------------------------------------~~~~~~l~  157 (386)
T PRK07550        148 -------------------------GL---------------------------------------------LPDPAAAE  157 (386)
T ss_pred             -------------------------CC---------------------------------------------CCCHHHHH
Confidence                                     00                                             01334444


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.++    ++++++++++|+||||.+++   +++|.++|++||+++|+||+|.....+. ...+...... ..+..+++.
T Consensus       158 ~~~~----~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~  232 (386)
T PRK07550        158 ALIT----PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPD-WDDTLVHLY  232 (386)
T ss_pred             HHhc----ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCC-ccccEEEEe
Confidence            4443    45788888899999999998   7899999999999999999998433221 1111111111 124578899


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ||||.+|.+|   ||+++++++++.+.......  +.+.+...+.++...++.+ +.+.++.++.++++++.+.+.|++.
T Consensus       233 S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~  309 (386)
T PRK07550        233 SFSKSYALTGHRVGAVVASPARIAEIEKFMDTV--AICAPRIGQIAVAWGLPNL-ADWRAGNRAEIARRRDAFRAVFARL  309 (386)
T ss_pred             cchhhccCcccceEeeecCHHHHHHHHHHHhhc--ccCCCcHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998556   99999999988887665443  3356777777777777643 4566677888999999999999886


Q ss_pred             -CCccccCCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        403 -GFPVEHTPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       403 -g~~~~~~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                       ++.+.+..+.++++.++. ..+..+++..|++++||.+.|+..+. ..+++++|++++ ..+++++++++++|.++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~-~~~~~~iRis~~-~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        310 PGWELLASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFG-PGQEGYLRLAFA-NADVAGIGELVERLRAF  384 (386)
T ss_pred             CCceeCCCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhC-CCCCCEEEEEee-cCCHHHHHHHHHHHHhh
Confidence             655444444567777775 55688999988667899999988653 334679999997 45689999999998864

>PRK07337 aminotransferase; Validated

Probab=99.96  E-value=1.4e-26  Score=237.35  Aligned_cols=341  Identities=14%  Similarity=0.099  Sum_probs=230.2

Q ss_pred             CCceeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~   89 (514)
                      .+..++|+..+  ++...|.+.+++.+.+....   ..+....|..++.+.+.+.+.+.+|.    ++.++++++++|+.
T Consensus        28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~  104 (388)
T PRK07337         28 AGRDIIHMGIGEPDFTAPEPVVEAAARALRRGV---TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALL  104 (388)
T ss_pred             cCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHH
Confidence            34567777543  34446788888888776311   11112234445555555555544442    34455555566777


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.++|......++..|++++.++.+.                                     
T Consensus       105 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-------------------------------------  145 (388)
T PRK07337        105 LACLALVE--RGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGP-------------------------------------  145 (388)
T ss_pred             HHHHHhcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCC-------------------------------------
Confidence            77777765  999999999999988777666666655443210                                     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              .+++....
T Consensus       146 ------------------------------------------------------------------------~~~~~~~~  153 (388)
T PRK07337        146 ------------------------------------------------------------------------AERFQLTA  153 (388)
T ss_pred             ------------------------------------------------------------------------ccCCcCCH
Confidence                                                                                    00111222


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +.+++...++++++++++|+||||.+++   +++|.++|+++++++|+||+|..........++.   .. .+..+++.|
T Consensus       154 ~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~---~~-~~~vi~~~S  229 (388)
T PRK07337        154 ADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSAL---SL-GDDVITINS  229 (388)
T ss_pred             HHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChh---hc-cCCEEEEEe
Confidence            3333333456899999999999999998   6888999999999999999998322221111111   11 234678899


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      |||.+|.+|   ||+++++++++.+......+  ..+.+.+.+.++..+++.-......+.++.++++++++.+.|++.+
T Consensus       230 ~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~  307 (388)
T PRK07337        230 FSKYFNMTGWRLGWLVVPEALVGTFEKLAQNL--FICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLG  307 (388)
T ss_pred             chhhcCCchhheeeeecCHHHHHHHHHHHHHh--ccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998768   99999999998887765444  2355677777777766521113356678888999999999999987


Q ss_pred             Ccc-ccC-CCcEEEEEeCCC-----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        404 FPV-EHT-PSHIIPIKIGNP-----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       404 ~~~-~~~-~~~~~~i~l~~~-----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.+ ..+ .+.+++++++..     .+..++++.+++++||.+.|+..+....+.+++|++++.  +++++++++++|.+
T Consensus       308 ~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~--~~~~l~~~l~rl~~  385 (388)
T PRK07337        308 FKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT--SMSRLEEAVARLGK  385 (388)
T ss_pred             CccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence            664 234 455777887641     356788888767899999999876544456899999994  68889999988887


Q ss_pred             HH
Q psy16848        477 VW  478 (514)
Q Consensus       477 ~l  478 (514)
                      ++
T Consensus       386 ~l  387 (388)
T PRK07337        386 LF  387 (388)
T ss_pred             Hh
Confidence            54

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.96  E-value=8.1e-27  Score=241.83  Aligned_cols=340  Identities=19%  Similarity=0.234  Sum_probs=238.0

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCC-cCcc-cCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchh
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGG-TRNI-SGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLF   93 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~   93 (514)
                      .|.|.++.. ..++.+.+++.+.+..+..+..+ .... ....+..+++++.+++++|.+   ..++++|+|+++..++.
T Consensus        34 iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~  112 (424)
T PLN02855         34 VYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAY  112 (424)
T ss_pred             EEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHH
Confidence            455554443 23567899998888765433222 1111 112345678999999999873   34555566777666665


Q ss_pred             hcc--ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         94 TLG--KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        94 ~l~--~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      .+.  ...+||.|++..++|.+....++                                                    
T Consensus       113 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~----------------------------------------------------  140 (424)
T PLN02855        113 TWGLANLKPGDEVILSVAEHHSNIVPWQ----------------------------------------------------  140 (424)
T ss_pred             HhhhhcCCCcCEEEECCCccHHHHHHHH----------------------------------------------------
Confidence            431  23489999999999988753321                                                    


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-----CChh
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVN  246 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~  246 (514)
                                                                              ......|++++.++.     .+.+
T Consensus       141 --------------------------------------------------------~~a~~~g~~v~~v~~~~~~~~~~~  164 (424)
T PLN02855        141 --------------------------------------------------------LVAQKTGAVLKFVGLTPDEVLDVE  164 (424)
T ss_pred             --------------------------------------------------------HHHHHcCCEEEEEecCCCCCcCHH
Confidence                                                                    111222334444431     1333


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++.+    ++++++|++++++|+||.++|+++|.++|+++|+++++|++|+.|..        +......++|++++|
T Consensus       165 ~l~~~i----~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~--------~~~~~~~~~d~~~~s  232 (424)
T PLN02855        165 QLKELL----SEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHM--------PVDVQTLGADFLVAS  232 (424)
T ss_pred             HHHHHh----ccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCc--------CCCchhcCCCEEEee
Confidence            444443    45789999999999999999999999999999999999999986543        111113468999999


Q ss_pred             CcccccCCC-eEEEecHHHHHHHHhhcCce------------------Eec-cCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        327 LGKAFGNIG-GYIVGTKNFIDTIRSYAAGF------------------IFT-TSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       327 ~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~------------------~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                      +||.+|+.| |+++.++++++.+.....+.                  .|. .+.+....+++.++++++.+.+++++++
T Consensus       233 ~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~  312 (424)
T PLN02855        233 SHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHE  312 (424)
T ss_pred             cccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            999888877 99999998887765432110                  011 1345566777888888887778899999


Q ss_pred             HHHHHHHHHHHHHHhC-CCccccC-------CCcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCC-----CCCc
Q psy16848        387 KHQDIVAYLRNELIQI-GFPVEHT-------PSHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVP-----VGEE  452 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~-g~~~~~~-------~~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~-----~~~~  452 (514)
                      +..++.+++.+.|+++ ++.+..+       .++++.+.++. ....++.+.|. ++ ||.++.+..|..+     .-+.
T Consensus       313 ~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~-~~~~~v~~~L~-~~~gI~v~~g~~c~~~~~~~~g~~~  390 (424)
T PLN02855        313 YEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEG-IHPTDLSTFLD-QQHGVAIRSGHHCAQPLHRYLGVNA  390 (424)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECC-cCHHHHHHHhc-ccCCEEEechhhhhHHHHHHhCCCC
Confidence            9999999999999887 7766532       23577788764 34678888885 66 9999987765321     1146


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++|+|++.++|++|++++++.|+++++.+
T Consensus       391 ~iRiS~~~ynt~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        391 SARASLYFYNTKEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             eEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999988764

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.9e-26  Score=237.31  Aligned_cols=344  Identities=15%  Similarity=0.144  Sum_probs=238.7

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEecc-ccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSC-YVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sG-t~a~~   89 (514)
                      +|...+|+..+.  +..+|.+.+++.+.+...   ...+....|..++.+++++.+++.+|.+   ..+++++| ++|+.
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~  107 (402)
T PRK06107         31 AGRSIVDLTVGEPDFDTPDHIKQAAVAAIERG---ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF  107 (402)
T ss_pred             ccCCEEEcCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            455678885433  223678888888888642   1223334567788888888888887653   23556665 67777


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|++++++|......+...+..++.++...                                     
T Consensus       108 ~~~~~~~~--~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~-------------------------------------  148 (402)
T PRK06107        108 LALMATLE--AGDEVIIPAPYWVSYPDMVLANDGTPVIVACPE-------------------------------------  148 (402)
T ss_pred             HHHHHhcC--CCCEEEEecCCCcCHHHHHHHcCCEEEEecCCc-------------------------------------
Confidence            77777755  999999999977665544444444333221100                                     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              .+++....
T Consensus       149 ------------------------------------------------------------------------~~~~~~~~  156 (402)
T PRK06107        149 ------------------------------------------------------------------------EQGFKLTP  156 (402)
T ss_pred             ------------------------------------------------------------------------ccCCCCCH
Confidence                                                                                    01121222


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHc-CCEEEEecccccccc-CCCCCCccccCCCccCceEEE
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQH-GALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~-gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~  324 (514)
                      +.+++...++++++++++|+||||.+++   +++|+++|+++ ++++|+||+|....+ +....++........+..+++
T Consensus       157 ~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~  236 (402)
T PRK06107        157 EALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVT  236 (402)
T ss_pred             HHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEE
Confidence            3333333456889999999999999998   68888889998 999999999984332 222222222111112578999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +||||.++.+|   ||+++++++++.+.......  +.+.+.+.+.++...|+.. ..++++.++.++++++.+.+.|++
T Consensus       237 ~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~  313 (402)
T PRK06107        237 NGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQS--SSCPSSISQAAAAAALNGD-QSFVTESVAVYKQRRDYALALLNA  313 (402)
T ss_pred             eccchhhcCcccceeeeecCHHHHHHHHHHHHhc--ccCCChHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998668   99999999999888766444  3367888888888888532 346677888899999999999988


Q ss_pred             C-CCccccCCCc-EEEEEeC--------CC---ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848        402 I-GFPVEHTPSH-IIPIKIG--------NP---ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       402 ~-g~~~~~~~~~-~~~i~l~--------~~---~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id  468 (514)
                      . |+.+..+.++ +++++++        ..   .+..+++..+++++||.+.|+..+..   .+++|++++  .++++++
T Consensus       314 ~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~---~~~iRis~~--~~~e~l~  388 (402)
T PRK06107        314 IPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL---SPYFRLSIA--TSLETLE  388 (402)
T ss_pred             CCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC---CCeEEEEeC--CCHHHHH
Confidence            7 7777666665 4556652        11   13567787777789999999987542   469999999  4789999


Q ss_pred             HHHHHHHHHHHHc
Q psy16848        469 KFVTDLLAVWKSL  481 (514)
Q Consensus       469 ~~~~~l~~~l~~~  481 (514)
                      +++++|+++++++
T Consensus       389 ~~l~~l~~~l~~~  401 (402)
T PRK06107        389 EACARIERAVAAL  401 (402)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>PRK07482 hypothetical protein; Provisional

Probab=99.96  E-value=1.5e-26  Score=240.08  Aligned_cols=371  Identities=14%  Similarity=0.082  Sum_probs=237.5

Q ss_pred             CCceeeecccCCC---C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQY---K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~---~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.-+   +  +||+|.+++.+|+++.......   .....+...++.+++++.+.  .++++|++||++|+
T Consensus        48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~---~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAv  124 (461)
T PRK07482         48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTY---VGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDAN  124 (461)
T ss_pred             CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccc---cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHH
Confidence            6677777754322   2  3899999999999984321111   11235778899999999873  56788999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      +.|++....             |                           .-.+..++|+++|.+++.||...       
T Consensus       125 e~AlKlAr~-------------~---------------------------~~~~g~~~r~~Ii~~~~~YHG~t-------  157 (461)
T PRK07482        125 ETQIKLVWY-------------Y---------------------------NNVLGRPEKKKIISRWRGYHGSG-------  157 (461)
T ss_pred             HHHHHHHHH-------------H---------------------------HHhcCCCCCceEEEecCccCCcc-------
Confidence            999965432             0                           00012245678888888887211       


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                         .|...-.+.         .........+.....-++.++.......+.....+...+.+.+
T Consensus       158 -------------------~ga~s~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l  209 (461)
T PRK07482        158 -------------------VVTGSLTGL---------SLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADEL  209 (461)
T ss_pred             -------------------HhhhhccCC---------chhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHH
Confidence                               000000000         0000000000000000000100000000000000001134566


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      ++.+.+...+++++|+++++++..|.+.+    +++|+++|++||+++|.||+++ +|+.|+.+  ..+.+++  .||++
T Consensus       210 ~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~--a~~~~gv--~PDiv  285 (461)
T PRK07482        210 EELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMF--GSDHYGI--EPDLI  285 (461)
T ss_pred             HHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchh--hHHhcCC--CCCEE
Confidence            77775444467899999999999898876    8999999999999999999999 77776543  2244555  89999


Q ss_pred             EcCCcccccCCC----eEEEecHHHHHHHHhhc-----CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG----GYIVGTKNFIDTIRSYA-----AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       324 ~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                        +++|++++ |    |.+++++++.+.+....     ...+.+++.+++.++++.++|+.+.++.   +.++.+++.++
T Consensus       286 --~~gKgl~g-G~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~---l~~~~~~~g~~  359 (461)
T PRK07482        286 --TVAKGLTS-AYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILEREN---LVGNAAEVGAY  359 (461)
T ss_pred             --EEcccccc-CccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence              89999976 3    66778888877765321     1122356889999999999999987665   67778888888


Q ss_pred             HHHHHHhC--CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        395 LRNELIQI--GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       395 l~~~L~~~--g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      +.+.|+++  ..+.   +...|.++.+++....           ....+...++ ++||++.+..      ..+.+|+.+
T Consensus       360 l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~~------~~~~i~~~P  432 (461)
T PRK07482        360 FRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAAL-ERGVIARAMP------HGDILGFAP  432 (461)
T ss_pred             HHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHH-HCCcEEecCC------CCCEEEEeC
Confidence            88888764  3332   3446678888874211           1356778886 8999985321      135899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +..+|++|+++++++++++++++
T Consensus       433 pl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        433 PLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.96  E-value=6.2e-27  Score=242.25  Aligned_cols=340  Identities=23%  Similarity=0.209  Sum_probs=236.3

Q ss_pred             cCCceeeecccC-C--CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSV-Q--YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~-~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a   87 (514)
                      .+|+.++||.++ .  .++  ||++.+++.+++.+... ...   ..+..+...+++++++++++  .+++++++||++|
T Consensus        33 ~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~---~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea  108 (413)
T cd00610          33 VDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTH-FSL---GFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEA  108 (413)
T ss_pred             CCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcC-ccC---cccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHH
Confidence            378899999763 2  343  89999999999976321 111   11356889999999999998  7788999999999


Q ss_pred             cccchhhccccCCCceEEec-CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         88 NDSTLFTLGKMIPGLHYISD-AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~-~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +..++..+....+++.|++. ..+|.+...++...+.....  .                         .+.        
T Consensus       109 ~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~--~-------------------------~~~--------  153 (413)
T cd00610         109 VEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYR--G-------------------------GFG--------  153 (413)
T ss_pred             HHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCcccc--c-------------------------cCC--------
Confidence            99999876433356666655 45666666555544332100  0                         000        


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC---
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN---  243 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~---  243 (514)
                                                                                       ....+++.++.+   
T Consensus       154 -----------------------------------------------------------------~~~~~~~~~~~~~~~  168 (413)
T cd00610         154 -----------------------------------------------------------------PLLPGVLHVPYPYRY  168 (413)
T ss_pred             -----------------------------------------------------------------CCCCCcEEeCCCccc
Confidence                                                                             001112223322   


Q ss_pred             --------ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc
Q psy16848        244 --------DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI  310 (514)
Q Consensus       244 --------d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~  310 (514)
                              |.+.+++.+++. .++++++++++++|++|..++    +++|.++|++||+++|+||+|+ +|..+...  .
T Consensus       169 ~~~~~~~~d~~~l~~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~--~  245 (413)
T cd00610         169 RPPAELADDLEALEEALEEH-PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF--A  245 (413)
T ss_pred             cchhhHHHHHHHHHHHHhcC-CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh--h
Confidence                    556666666543 235789999999999999887    9999999999999999999998 33333211  1


Q ss_pred             cccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        311 GERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       311 ~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      .+..+.  .+|++  |++|++++ |   |++++++++++.+.........+.+.+++.++++.++++.+.++   ++.++
T Consensus       246 ~~~~~~--~~d~~--t~sK~l~~-g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~---~~~~~  317 (413)
T cd00610         246 FEHFGV--EPDIV--TLGKGLGG-GLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEE---GLLEN  317 (413)
T ss_pred             HhhcCC--CCCeE--EEcccccC-ccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc---cHHHH
Confidence            222332  56777  88999987 4   88899999988862111122224577888999999999887553   47788


Q ss_pred             HHHHHHHHHHHHHhCCC--cc---ccCCCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848        388 HQDIVAYLRNELIQIGF--PV---EHTPSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI  454 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~g~--~~---~~~~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i  454 (514)
                      ++++.+++.+.|+++..  +.   ..+.++++++.+++.        .....+.+.|+ ++||.+.++.       .+.+
T Consensus       318 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~-------~~~l  389 (413)
T cd00610         318 AAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG-------GNVI  389 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC-------CCEE
Confidence            88888888888877621  22   234567888887653        34677888886 8999998653       4589


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        455 RLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       455 Rl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      |++++..+|++++++++++++++
T Consensus       390 R~~~~~~~t~~~i~~~~~~l~~~  412 (413)
T cd00610         390 RLLPPLIITEEEIDEGLDALDEA  412 (413)
T ss_pred             EEECCCcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=5.5e-27  Score=237.93  Aligned_cols=320  Identities=16%  Similarity=0.096  Sum_probs=229.2

Q ss_pred             eeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecc-ccccccchhh
Q psy16848         19 VTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSC-YVANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sG-t~a~~~~l~~   94 (514)
                      ..+|+..+.+.  .+|.+.+++.+.++.....         ......++++.++++++.+ ..+++++| ++++..++.+
T Consensus        30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~---------p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  100 (359)
T PRK03158         30 KIVKLASNENPYGPSPKVKEAIAAHLDELALY---------PDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRA  100 (359)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHHhhcC---------CCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHH
Confidence            57888765433  4788999988887653211         1123567888888888753 34555555 4556666666


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      +..  +||.|+++.++|......+...|.+++.++..+.                                         
T Consensus       101 ~~~--~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~-----------------------------------------  137 (359)
T PRK03158        101 LLN--PGTNTVMAEPTFSQYRHNAIIEGAEVREVPLKDG-----------------------------------------  137 (359)
T ss_pred             HhC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEEecCCC-----------------------------------------
Confidence            655  9999999999998877666655655544332100                                         


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                                                                         ..|.+.+++.   
T Consensus       138 -------------------------------------------------------------------~~d~~~l~~~---  147 (359)
T PRK03158        138 -------------------------------------------------------------------GHDLEAMLKA---  147 (359)
T ss_pred             -------------------------------------------------------------------CcCHHHHHHh---
Confidence                                                                               0133333333   


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                       .+++++++++++|+||||.+++.++|.++++.  +|+++|+||+|.....+........... ..+.+++++||||.+|
T Consensus       148 -~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g  225 (359)
T PRK03158        148 -IDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLE-KYENLIVLRTFSKAYG  225 (359)
T ss_pred             -cCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHH-hcCCEEEEEechHhhc
Confidence             33468899999999999999999999998887  5999999999985443221111111111 2256899999999999


Q ss_pred             CCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        333 NIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       333 ~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      .+|   ||+++++++++.+......+    +.+.+.+.++.++++.  ..+.++.++.++++++++.+.|++.++.+.++
T Consensus       226 ~~GlRiG~~v~~~~~~~~~~~~~~~~----~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (359)
T PRK03158        226 LAALRVGYGIASEELIEKLNIARPPF----NTTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEYGLFYYPS  299 (359)
T ss_pred             CcchhhehhcCCHHHHHHHHHhcCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeeCCC
Confidence            778   99999999999887765432    5688888888888862  34556677778888888999998888777667


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .+.++++.++  .+..++++.|+ ++||.+.++..+.   .++++|++++   +.+++++++++|+++
T Consensus       300 ~g~~i~~~~~--~~~~~~~~~l~-~~gv~v~~g~~f~---~~~~iRi~~~---~~~~~~~l~~al~~~  358 (359)
T PRK03158        300 QTNFIFVDTG--RDANELFEALL-KKGYIVRSGAALG---FPTGVRITIG---LKEQNDKIIELLKEL  358 (359)
T ss_pred             cCcEEEEECC--CCHHHHHHHHH-HCCeEEeeCCCCC---CCCeEEEecC---CHHHHHHHHHHHHHh
Confidence            7778777774  24678999996 8999999988653   2579999998   899999999999875

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.2e-26  Score=238.17  Aligned_cols=341  Identities=16%  Similarity=0.171  Sum_probs=236.3

Q ss_pred             ceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccccc
Q psy16848         18 RVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVANDST   91 (514)
Q Consensus        18 ~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~~~   91 (514)
                      ..++|+..++..  .++.+.+++.+.+...   ...+....|..++.+++++.+.+.+|.    ++.++++++++++..+
T Consensus        33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~  109 (391)
T PRK08361         33 ENVISLGIGEPDFDTPKNIKEAAKRALDEG---WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA  109 (391)
T ss_pred             cCeEEcCCCCCCCCCCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence            346888654322  3567788877776541   111212234455555555555444442    3455556667788888


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.++|......++..|.+++.++.+...                                     
T Consensus       110 ~~~l~~--~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-------------------------------------  150 (391)
T PRK08361        110 FESLLE--EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREEN-------------------------------------  150 (391)
T ss_pred             HHHhcC--CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCcc-------------------------------------
Confidence            877765  99999999999999887777777776655431000                                     


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                             +.                                             ..|.+.+++.
T Consensus       151 -----------------------~~---------------------------------------------~~d~~~l~~~  162 (391)
T PRK08361        151 -----------------------EF---------------------------------------------QPDPDELLEL  162 (391)
T ss_pred             -----------------------CC---------------------------------------------CCCHHHHHHh
Confidence                                   00                                             0133444443


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCC
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +    .++++++++++|+||||.++|   +++|.++|+++++++|+||+|..... +....++.   ....+.+++++||
T Consensus       163 i----~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~---~~~~~~~i~~~s~  235 (391)
T PRK08361        163 I----TKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMI---KYAPDNTILANSF  235 (391)
T ss_pred             c----ccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHh---hcCCCCEEEEecC
Confidence            3    345789999999999999999   89999999999999999999984432 22211221   1123578999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS-QEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      ||.+|.+|   ||+++++++++.+.......  ..+.+...+.++..+++.... .++++.++.++++++.+.+.|++. 
T Consensus       236 SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  313 (391)
T PRK08361        236 SKTFAMTGWRLGFVIAPEQVIKDMIKLHAYI--IGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMP  313 (391)
T ss_pred             chhcCCcHhhhhhhccCHHHHHHHHHHHhhh--ccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999768   99999999988876654332  225567777777777753211 346788888999999999999987 


Q ss_pred             CCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       403 g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++.+..+.++ ++++.++. ..+..++++.|++++||.+.|+..+. ..+++++|++++  .+++++++++++|++++++
T Consensus       314 ~~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~-~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        314 HIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFG-KAGEGYIRISYA--TSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             CCeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence            7777677665 56677764 34678898888756899999988643 334679999998  4678999999999988764

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.96  E-value=1.7e-26  Score=237.33  Aligned_cols=340  Identities=15%  Similarity=0.112  Sum_probs=233.0

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-----cEEEEecc-ccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-----AGLVFTSC-YVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~i~~~sG-t~a   87 (514)
                      .|..++|+..++  +..++.+.+++.+.+..    ...+....|..++.+.+.+++.+.+|.+     ..+++++| +++
T Consensus        27 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~a  102 (396)
T PRK09147         27 ADLPPISLSIGEPKHPTPAFIKDALAANLDG----LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREA  102 (396)
T ss_pred             cCCCeEecCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHH
Confidence            467889986543  23356788887776542    1222223455667777777776665632     24555555 556


Q ss_pred             cccchhhccccCC---CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         88 NDSTLFTLGKMIP---GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        88 ~~~~l~~l~~~~~---gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      +..++.++..  +   ||.|+++.+.|......++..|.+++.++... +                              
T Consensus       103 l~~~~~~l~~--~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~-~------------------------------  149 (396)
T PRK09147        103 LFAFAQTVID--RDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDP-A------------------------------  149 (396)
T ss_pred             HHHHHHHHcC--CCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCc-c------------------------------
Confidence            7777777766  7   99999999999887766666666665543210 0                              


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                   ++.+                                             .|
T Consensus       150 -----------------------------~~~~---------------------------------------------~d  155 (396)
T PRK09147        150 -----------------------------NNFA---------------------------------------------PD  155 (396)
T ss_pred             -----------------------------ccCc---------------------------------------------cC
Confidence                                         0000                                             13


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCc--cc---cCCC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI--GE---RDGQ  316 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~--~~---~~~~  316 (514)
                      .+.+++.+.    ++++++++++||||||.+++   +++|.++|++|++++|+||+|....+.......  ..   ..+.
T Consensus       156 ~~~l~~~~~----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  231 (396)
T PRK09147        156 FDAVPAEVW----ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGR  231 (396)
T ss_pred             HHHHHHHHh----hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCc
Confidence            344444332    35889999999999999999   788899999999999999999954332211111  10   0110


Q ss_pred             -ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        317 -LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       317 -~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                       ..+..++++||||.++.+|   ||+++++++++.+.......  +.+.+...+.++.+.+.  ...++.+.++.+++++
T Consensus       232 ~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~--~~~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~~~  307 (396)
T PRK09147        232 DDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYH--GCAMPPAVQAASIAAWN--DEAHVRENRALYREKF  307 (396)
T ss_pred             cccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHhc--chhHHHHHHHHHHHHH
Confidence             1256799999999998878   99999999998887655333  33567777777666664  2456777888899999


Q ss_pred             HHHHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-----CCCCcEEEEEeCCCCCHHH
Q psy16848        393 AYLRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-----PVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       393 ~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-----~~~~~~iRl~~~~~~t~e~  466 (514)
                      +.+.+.|++. +.+..+ .+.+++++++  .+..++++.|++++||.+.|+..+..     ..+.+++|++++  .++++
T Consensus       308 ~~~~~~L~~~-~~~~~p~~g~f~~~~~~--~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~  382 (396)
T PRK09147        308 DAVTPILAPV-LDVQLPDAGFYLWAKVP--GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APLAE  382 (396)
T ss_pred             HHHHHHHHHh-cCCCCCCeeEEEEEECC--CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCHHH
Confidence            9999999885 554434 4557778877  34678888886678999999986432     234679999998  36888


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        467 IDKFVTDLLAVWK  479 (514)
Q Consensus       467 id~~~~~l~~~l~  479 (514)
                      +++++++|+++++
T Consensus       383 l~~~l~rl~~~~~  395 (396)
T PRK09147        383 CVEAAERIVDFCR  395 (396)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988763

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.96  E-value=1.4e-26  Score=233.99  Aligned_cols=331  Identities=18%  Similarity=0.135  Sum_probs=231.3

Q ss_pred             eeecccCCC-CC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--C-Cc-EEEEeccc-cccccch
Q psy16848         20 TCRLSSVQY-KV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--K-EA-GLVFTSCY-VANDSTL   92 (514)
Q Consensus        20 ~~d~~~~~~-~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~-~~-~i~~~sGt-~a~~~~l   92 (514)
                      ++||...+. ++ .|++.+++.+....    ...+....|..++.+.+.+.+.+..|  . +. .+++|+|+ +++..++
T Consensus         2 ~~~~~~g~p~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~   77 (350)
T TIGR03537         2 LFDFGTGDPKEPTPPFIRKALIDAVPE----VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP   77 (350)
T ss_pred             eEeccCCCCCCCCCHHHHHHHHHHHhc----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence            567754332 22 56788887776532    11222233555666666666665545  2 22 46666665 5666666


Q ss_pred             hhccccCCC---ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         93 FTLGKMIPG---LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        93 ~~l~~~~~g---d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .+++.  +|   |.|+++.+.|......++..|.+++.++....+                                   
T Consensus        78 ~~~~~--~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-----------------------------------  120 (350)
T TIGR03537        78 LVFID--PEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKED-----------------------------------  120 (350)
T ss_pred             HHHcC--CCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCccc-----------------------------------
Confidence            66665  65   799999999999888888888777765431000                                   


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                               +.                                             .-|.+.++
T Consensus       121 -------------------------~~---------------------------------------------~~d~~~l~  130 (350)
T TIGR03537       121 -------------------------GF---------------------------------------------LLRLEKVE  130 (350)
T ss_pred             -------------------------CC---------------------------------------------ccCHHHHH
Confidence                                     00                                             00334444


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +.+.    ++++++++++|+||||.+++   +++|.++|+++|+++|+||+|.....+....++.   ....+.++++.|
T Consensus       131 ~~~~----~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~---~~~~~~~i~~~s  203 (350)
T TIGR03537       131 KSIL----EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSAL---EVGIENVLAFHS  203 (350)
T ss_pred             Hhhh----hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchh---hcCcCCEEEEee
Confidence            4443    35789999999999999999   8999999999999999999998544433221111   112356899999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      |||.+|.+|   ||+++++++++.+......+  +.+.+...+.++.+++.  ...++.+.+++++++.+.+.+.|++.|
T Consensus       204 ~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~g  279 (350)
T TIGR03537       204 LSKRSGMTGYRSGFVAGDEKLISFLRKLRANF--GVASPDFVQAAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKVG  279 (350)
T ss_pred             cccccCCccccceeeecCHHHHHHHHHHHHhh--ccCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999998777   99999999999888765554  33555566666666654  234567788889999999999999988


Q ss_pred             CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       404 ~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.+..+.++ ++++.+++..+..++++.|. ++||.+.++..+. ....+++|+++.  .++++++++++++++
T Consensus       280 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~L~-~~gv~v~~g~~f~-~~~~~~~Ri~~~--~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       280 LEYLYPDATFYLWVKVPSGIDAKDYALRLL-ENGIVVAPGENFG-SGEEGYVRVALV--PTLEECEEALRLWER  349 (350)
T ss_pred             CcccCCCeEEEEEEECCCCCCHHHHHHHHH-HCCEEEcCchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHhc
Confidence            877666655 56788876556789999996 7999999988653 233679999986  578899999988864

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.96  E-value=3.1e-26  Score=218.93  Aligned_cols=334  Identities=16%  Similarity=0.151  Sum_probs=250.0

Q ss_pred             CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecc-ccccccchhhccccCCCce
Q psy16848         28 YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSC-YVANDSTLFTLGKMIPGLH  103 (514)
Q Consensus        28 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sG-t~a~~~~l~~l~~~~~gd~  103 (514)
                      +...|+|.+|+.+.+++--+++     .++..++.+++..+.++..+.   +..++++.| -.++..++.++.+  +||.
T Consensus        37 f~~pp~i~~Al~~rvdhGvfGY-----~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~--~gd~  109 (388)
T COG1168          37 FPTPPEIIEALRERVDHGVFGY-----PYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK--PGDG  109 (388)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc--CCCe
Confidence            3347999999999999732332     245667888999999988762   345555544 5578888888866  9999


Q ss_pred             EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848        104 YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  183 (514)
Q Consensus       104 v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (514)
                      |++..|.|......++..|.+++..+-.                    .-+|.|.                         
T Consensus       110 Vvi~tPvY~PF~~~i~~n~R~~i~~pL~--------------------~~~~~y~-------------------------  144 (388)
T COG1168         110 VVIQTPVYPPFYNAIKLNGRKVIENPLV--------------------EDDGRYE-------------------------  144 (388)
T ss_pred             eEecCCCchHHHHHHhhcCcEEEecccc--------------------ccCCcEE-------------------------
Confidence            9999999999999999888877754321                    0111111                         


Q ss_pred             ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEE
Q psy16848        184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV  263 (514)
Q Consensus       184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v  263 (514)
                                                                                 -|++.+++.+...   +++++
T Consensus       145 -----------------------------------------------------------iD~~~LE~~~~~~---~vkl~  162 (388)
T COG1168         145 -----------------------------------------------------------IDFDALEKAFVDE---RVKLF  162 (388)
T ss_pred             -----------------------------------------------------------ecHHHHHHHHhcC---CccEE
Confidence                                                                       1677777777653   46899


Q ss_pred             EEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccCCC---e
Q psy16848        264 AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---G  336 (514)
Q Consensus       264 v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G  336 (514)
                      +++|||||+|.+++   |.+|.++|.+||+.||+||+|+...+ |....++.....-..+..+.+.|.||+|+..|   +
T Consensus       163 iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a  242 (388)
T COG1168         163 ILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCA  242 (388)
T ss_pred             EEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhhe
Confidence            99999999999999   89999999999999999999995443 43333332222222467788889999999877   5


Q ss_pred             EEE-ecHHHHHHHH-hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCccccCCCc
Q psy16848        337 YIV-GTKNFIDTIR-SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPVEHTPSH  412 (514)
Q Consensus       337 ~l~-~~~~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~  412 (514)
                      +++ .++++..+.. +.....  ....|.+.+.|..++.+.- +++++++.+.++.+++++.+.|.+.  ++.+..++|.
T Consensus       243 ~~Ii~n~~lr~~~~~~l~~~~--~~~~n~lg~~A~~aAY~~G-~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gT  319 (388)
T COG1168         243 YIIISNRELRAKFLKRLKRNG--LHGPSALGIIATEAAYNQG-EPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGT  319 (388)
T ss_pred             eEEecCHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCc
Confidence            554 4455433332 222222  3367888888888888865 6889999999999999999999997  8888888876


Q ss_pred             -EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        413 -IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       413 -~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                       ..++.+.. +.+..++.+.++++.+|.+.+|..++ ..+.+++|+++.  ++++-+++++++|+..+++.
T Consensus       320 YL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG-~~g~gf~RlN~a--cpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         320 YLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFG-EEGSGFVRLNFA--CPRAILEEALERLKRALKKR  387 (388)
T ss_pred             eeeeeeccccCCChHHHHHHHHHhhcEeccCCCccC-cCCCceEEEecC--CCHHHHHHHHHHHHHHHhcc
Confidence             45566653 23456888999889999999999844 667899999998  78999999999999887754

>KOG0257|consensus

Probab=99.96  E-value=1.3e-27  Score=230.58  Aligned_cols=333  Identities=21%  Similarity=0.236  Sum_probs=239.2

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecc-ccccccchhhccccCCCceEE
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSC-YVANDSTLFTLGKMIPGLHYI  105 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sG-t~a~~~~l~~l~~~~~gd~v~  105 (514)
                      ++-+.+++.+.+.....  ..+...+|.+++.+.|++++++++|.    +.-+++|+| .+++..++.+++.  +||+|+
T Consensus        46 P~fv~ea~~~~~~~~~~--~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--~GDeVi  121 (420)
T KOG0257|consen   46 PKFVTEAAKNAAKEPST--NQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--PGDEVI  121 (420)
T ss_pred             cHHHHHHHHHHhccchh--ccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC--CCCEEE
Confidence            45678888887776422  22334567889999999999998763    333555555 5677778888877  999999


Q ss_pred             ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848        106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  185 (514)
Q Consensus       106 ~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (514)
                      +-++.+.+....++.+|..++.++..                ++-                                   
T Consensus       122 i~eP~fd~Y~~~~~maG~tpv~v~~~----------------~~~-----------------------------------  150 (420)
T KOG0257|consen  122 VFEPFFDCYIPQVVMAGGTPVFVPLK----------------PKE-----------------------------------  150 (420)
T ss_pred             EecCcchhhhhHHhhcCCcceeeccc----------------ccc-----------------------------------
Confidence            99999999988888888877765441                000                                   


Q ss_pred             ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEE
Q psy16848        186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF  265 (514)
Q Consensus       186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~  265 (514)
                                                                      |.    +..+++..+...++...+++||+|++
T Consensus       151 ------------------------------------------------g~----~~s~~~~~D~~~le~~~t~kTk~Ii~  178 (420)
T KOG0257|consen  151 ------------------------------------------------GN----VSSSDWTLDPEELESKITEKTKAIIL  178 (420)
T ss_pred             ------------------------------------------------cc----ccCccccCChHHHHhhccCCccEEEE
Confidence                                                            00    01224444455566666788999999


Q ss_pred             ecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccc-ccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEE
Q psy16848        266 ETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVG-LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYI  338 (514)
Q Consensus       266 ~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g-~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l  338 (514)
                      ++||||||.+.+   |++|+++|++||+++|.||+|... +.+.....+....+ ..+..+-++|++|++|..|   ||+
T Consensus       179 ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPg-m~ertitvgS~gKtf~~TGWrlGW~  257 (420)
T KOG0257|consen  179 NTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPG-MYERTITVGSFGKTFGVTGWRLGWA  257 (420)
T ss_pred             eCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCc-hhheEEEeccccceeeeeeeeeeee
Confidence            999999999999   899999999999999999999943 33432323332333 3568899999999999999   999


Q ss_pred             EecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-------hchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848        339 VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-------SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS  411 (514)
Q Consensus       339 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  411 (514)
                      ++++++...+........+  ..+.+.+.|..+++..-.       ...+.++.+.++++++.+.+.|.++|+++..+.+
T Consensus       258 igp~~L~~~~~~vh~~~~~--~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~g  335 (420)
T KOG0257|consen  258 IGPKHLYSALFPVHQNFVF--TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPEG  335 (420)
T ss_pred             echHHhhhhHHHHhhcccc--ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence            9999999999888877755  444455544444444322       1334568899999999999999999999988876


Q ss_pred             c-EEEEEeCC------------CccHHHHHHHHHHhCCeEEecccCCCCCC----CCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        412 H-IIPIKIGN------------PALNTKICDMLLKEKGHYVQPINYPTVPV----GEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       412 ~-~~~i~l~~------------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      . +++..++.            ..+...++.++.++.|+.+-|.+.+....    ..+.+|+++.  -+++-++..++.+
T Consensus       336 ayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~--k~~~~L~~a~e~l  413 (420)
T KOG0257|consen  336 AYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFC--KADETLRKAIERL  413 (420)
T ss_pred             ceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence            6 55566651            11344677888888899988887644332    2456777766  3566677777776


Q ss_pred             H
Q psy16848        475 L  475 (514)
Q Consensus       475 ~  475 (514)
                      +
T Consensus       414 ~  414 (420)
T KOG0257|consen  414 K  414 (420)
T ss_pred             h
Confidence            6

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2e-26  Score=235.53  Aligned_cols=338  Identities=14%  Similarity=0.118  Sum_probs=236.9

Q ss_pred             CceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848         17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL   92 (514)
Q Consensus        17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l   92 (514)
                      +..+|+++.+.  +..+|.+.+++.+++......      .++......++++.+++++|.+  ..++++++++++..++
T Consensus        27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~  100 (380)
T PRK06225         27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYC------KYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVM  100 (380)
T ss_pred             cCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCC------CCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHH
Confidence            45678886433  335789999999888742111      1223334678999999998754  4666777788888888


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .+++.  +||.|+++++.|......++..|++++.++..+                                        
T Consensus       101 ~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~----------------------------------------  138 (380)
T PRK06225        101 RAFLS--PGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYS----------------------------------------  138 (380)
T ss_pred             HHhcC--CCCEEEEcCCCCcchHHHHHHhCceEEeecccc----------------------------------------
Confidence            88865  999999999988766655555666555433100                                        


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                          +.+++..+.+.+
T Consensus       139 --------------------------------------------------------------------~~~~~~~d~~~l  150 (380)
T PRK06225        139 --------------------------------------------------------------------EECNYKLTPELV  150 (380)
T ss_pred             --------------------------------------------------------------------ccCCccCCHHHH
Confidence                                                                                000122222334


Q ss_pred             hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      ++..+++++++++++|+||||.+++   +++|.++|+++|+++|+||+|.....+..  ..   .....+.++++.||||
T Consensus       151 ~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~---~~~~~~~~i~~~s~SK  225 (380)
T PRK06225        151 KENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHT--LA---AEYAPEHTVTSYSFSK  225 (380)
T ss_pred             HhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCC--ch---hhcCCCCEEEEeechh
Confidence            4444456889998899999999998   89999999999999999999973222111  11   1112356788899999


Q ss_pred             cccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16848        330 AFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP  405 (514)
Q Consensus       330 ~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  405 (514)
                      ++|.+|   ||+++++++++.+......   +.+.+.+.+.++.+.++.. ....+++++.++++.+.+.+.|+++ ++.
T Consensus       226 ~~g~~G~RiG~i~~~~~l~~~~~~~~~~---~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  301 (380)
T PRK06225        226 IFGMAGLRIGAVVATPDLIEVVKSIVIN---DLGTNVIAQEAAIAGLKVK-DEWIDRIRRTTFKNQKLIKEAVDEIEGVF  301 (380)
T ss_pred             hcCCccceeEEEecCHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence            998767   9999999999888765421   2355677777777777643 3445566677777788888888875 532


Q ss_pred             --cccCCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        406 --VEHTPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       406 --~~~~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                        ..++.+.++++.++. ..+..++++.|. ++||.+.++.++....+.+++|++++  .+++++++++++|++++++++
T Consensus       302 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~--~~~e~l~~~~~~l~~~~~~~~  378 (380)
T PRK06225        302 LPVYPSHGNMMVIDISEAGIDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFS--IPREQVEVFCEEFPDVVETLR  378 (380)
T ss_pred             cccCCCCCeEEEEEcccccCCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence              334556688887754 346788999996 89999999876443345679999998  478999999999999998765

>PRK08175 aminotransferase; Validated

Probab=99.96  E-value=4.5e-26  Score=234.02  Aligned_cols=348  Identities=15%  Similarity=0.108  Sum_probs=237.8

Q ss_pred             cCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---Cc-EEEEecccc-c
Q psy16848         15 KSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EA-GLVFTSCYV-A   87 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~-~i~~~sGt~-a   87 (514)
                      ..|..++|+..+...  ..+.+.+++.+.+...  ....+....|..++.+.+.+.+.+.+|.   +. .+++++|++ +
T Consensus        26 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~  103 (395)
T PRK08175         26 RRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRP--DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEG  103 (395)
T ss_pred             hcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCC--CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence            356778998654433  2455777776665431  1122223345556666666666655442   23 466667664 5


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++..+..  |||.|+++.+.|......++..|.+++.++....                                  
T Consensus       104 l~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~----------------------------------  147 (395)
T PRK08175        104 LAHLMLATLD--HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEG----------------------------------  147 (395)
T ss_pred             HHHHHHHhCC--CCCEEEEcCCCCcchHHHHHHcCCeEEEEecccC----------------------------------
Confidence            5556666655  9999999999998877666666666554432100                                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                ..+.+.
T Consensus       148 --------------------------------------------------------------------------~~~~~~  153 (395)
T PRK08175        148 --------------------------------------------------------------------------VDFFNE  153 (395)
T ss_pred             --------------------------------------------------------------------------CCcHHH
Confidence                                                                                      002344


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+++. .++++++++++|+||||.+++   +++|.++|++||+++|+||+|.....+ ....++..... ..+..++
T Consensus       154 l~~~l~~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~-~~~~~i~  231 (395)
T PRK08175        154 LERAIRES-YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG-AKDVAVE  231 (395)
T ss_pred             HHHHHhhc-cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC-cccCEEE
Confidence            44444432 235789999999999999999   489999999999999999999844332 11112221111 1245688


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++||||.+|.+|   ||+++++++++.+.......  ..+.+.+.+.++..+++.. ..+++++++.++++++++.+.|+
T Consensus       232 ~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~  308 (395)
T PRK08175        232 FFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYH--DYGTFTPLQVAAIAALEGD-QQCVRDIAEQYKRRRDVLVKGLH  308 (395)
T ss_pred             EeeccccccCcchhheeeeCCHHHHHHHHHHHhhc--ccCCCcHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999998768   99999999999887665443  2244555666666767532 34577788999999999999999


Q ss_pred             hCCCccccC-CCcEEEEEeCCCc---cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHT-PSHIIPIKIGNPA---LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       401 ~~g~~~~~~-~~~~~~i~l~~~~---~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.++.+..+ .+.++++++++..   +..++++.+++++||.+.++..+. ..+++++|+++.  .+++.+.+++++|.+
T Consensus       309 ~~~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~-~~~~~~lRis~~--~~~~~~~~al~~l~~  385 (395)
T PRK08175        309 EAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG-DYGDTHVRFALI--ENRDRIRQAIRGIKA  385 (395)
T ss_pred             HcCCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhC-cCCCCeEEEEeC--CCHHHHHHHHHHHHH
Confidence            988776655 4557888887642   367888887667899999988643 334679999997  578999999999999


Q ss_pred             HHHHcC
Q psy16848        477 VWKSLD  482 (514)
Q Consensus       477 ~l~~~~  482 (514)
                      ++++..
T Consensus       386 ~l~~~~  391 (395)
T PRK08175        386 MFRADG  391 (395)
T ss_pred             HHHhcC
Confidence            988654

>PRK05965 hypothetical protein; Provisional

Probab=99.96  E-value=1.3e-26  Score=240.51  Aligned_cols=218  Identities=20%  Similarity=0.243  Sum_probs=168.0

Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      +.+++.+++...+++++|++++++...|.+.+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++  .|
T Consensus       202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~--a~~~~gv--~P  277 (459)
T PRK05965        202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF--ACEAEGV--VP  277 (459)
T ss_pred             HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhh--hHhhcCC--CC
Confidence            45666676544467999999999999998876    8999999999999999999999 77776532  2334554  89


Q ss_pred             eEEEcCCcccccCCC----eEEEecHHHHHHHHhhc-----CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYA-----AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       321 di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      |++  +++|.+++ |    |.+++++++.+.+....     ...+.+++.+++.++++.++|+.+.++.   +.++.+++
T Consensus       278 Div--~~gKgl~g-G~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~  351 (459)
T PRK05965        278 DLM--TVAKGLTS-GYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGG---LLANGQKA  351 (459)
T ss_pred             CeE--Eechhhcc-CCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHH
Confidence            999  99999976 4    78889999888775321     1123356889999999999999997666   77788899


Q ss_pred             HHHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        392 VAYLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       392 ~~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      .+++.+.|+++ ..+.   +...|.++.+++....           ....+.+.++ ++|+.+.+       .+.+.+|+
T Consensus       352 g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gll~~~-------~g~~~i~~  423 (459)
T PRK05965        352 GPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAY-ANGLVFRA-------FGDGVLGF  423 (459)
T ss_pred             HHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHH-hCCeEEEe-------cCCcEEEE
Confidence            99999888876 2222   2345667777763210           1346777786 89999863       13468999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+++.+|++|++++++++.++++++
T Consensus       424 ~PpL~it~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        424 APALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.96  E-value=1.6e-26  Score=237.68  Aligned_cols=220  Identities=20%  Similarity=0.261  Sum_probs=161.7

Q ss_pred             hhHHHHHHhhc-cCCCceEEEEecCCCCCcccc-C---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        245 VNHLTQVLENM-DVKIPKLVAFETVHSMTGAIC-P---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       245 ~~~l~~~l~~~-~~~~~~~vv~~~~~nptG~~~-~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                      ++.+++.+.+. ..+++++|++++++..+|... |   +++|+++|++||+++|+||+++ +|..|...  ..+..+.  
T Consensus       183 ~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~--a~~~~gv--  258 (425)
T PRK07495        183 LAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF--AMEHHEV--  258 (425)
T ss_pred             HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce--eecccCC--
Confidence            34456666532 235689999999998888554 4   8999999999999999999998 44443211  1223333  


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .+|++  +++|.+++ |   |++++++++.+.+.......  +++.+++.++++.++++.+.++.   +.++.+++.+++
T Consensus       259 ~pDi~--tlsK~l~~-G~pigav~~~~~i~~~~~~~~~~~--T~~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l  330 (425)
T PRK07495        259 AADLT--TMAKGLAG-GFPLAAVTGRAEIMDAPGPGGLGG--TYGGNPLGIAAAHAVLDVIEEED---LCERANQLGNRL  330 (425)
T ss_pred             CCCEE--eehhhhcC-CccceEEEEcHHHHhccCCCCcCC--CCCCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHH
Confidence            78988  99999986 5   88999999988776543333  55789999999999999886554   677788888888


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCCCc-------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCC
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGNPA-------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT  463 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~~~-------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t  463 (514)
                      ++.|+++  .++.   +...|.++++++.+..       ....+.+.++ ++|+.+.+..     ...+.+|+.++..+|
T Consensus       331 ~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g-----~~~~~~r~~Ppl~it  404 (425)
T PRK07495        331 KQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILLTCG-----VHGNVIRFLAPITIQ  404 (425)
T ss_pred             HHHHHHHHhhCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeecC-----CCCCEEEEeCCCccC
Confidence            8887765  2332   2345678888874321       1346777775 8999986321     124689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q psy16848        464 REMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~~~  482 (514)
                      ++++++++++|+++++++.
T Consensus       405 ~~~id~~~~~l~~~l~~~~  423 (425)
T PRK07495        405 DDVFAEALDILEASILEAS  423 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998754

>PRK07678 aminotransferase; Validated

Probab=99.96  E-value=1.3e-26  Score=240.05  Aligned_cols=223  Identities=21%  Similarity=0.233  Sum_probs=166.6

Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      +++.++....+++++|++++++...|.+.+    +++|+++|++||+++|.||+++ +|+.|+.+ ++ +.+++  .||+
T Consensus       202 l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~-~~~gv--~PDi  277 (451)
T PRK07678        202 IDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF-GF-MNYGV--KPDI  277 (451)
T ss_pred             HHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhH-HH-HhcCC--CCCE
Confidence            455565333467999999999999898877    8999999999999999999997 77766432 12 34554  7999


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcC----ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAA----GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      +  +++|++|+..   |.+++++++.+.+.....    ....+++.+++.++++.++|+.+.++.   +.++.+++.+++
T Consensus       278 v--t~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~---~~~~~~~~g~~l  352 (451)
T PRK07678        278 I--TMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENEN---LIERSAQLGELL  352 (451)
T ss_pred             E--EeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence            9  8999998722   778889999887764211    123366889999999999999886655   677788888888


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCCC---------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGNP---------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~~---------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      .+.|++.  ..++   +...|.++.+++...         .....+...++ ++||++.+. .+..+...+.+|++++..
T Consensus       353 ~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~-~~Gv~~~~~-g~~v~~~~~~lrl~Ppl~  430 (451)
T PRK07678        353 LEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACK-EKGLIIGKN-GDTVAGYNNVLTLSPPLV  430 (451)
T ss_pred             HHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHH-HCCcEEeec-CccccCCCCEEEEECCCc
Confidence            8877653  2222   344677888777321         12456778886 899999642 222233357899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                      +|++|+++++++++++++++
T Consensus       431 it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        431 ISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998765

>PRK07777 aminotransferase; Validated

Probab=99.96  E-value=2.6e-26  Score=235.36  Aligned_cols=342  Identities=17%  Similarity=0.161  Sum_probs=233.2

Q ss_pred             ceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-----cEEEEecccccccc
Q psy16848         18 RVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-----AGLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~i~~~sGt~a~~~   90 (514)
                      ...+|+..+..  -.++.+.+++.+.+..   ....+....|..++.+.+.+.+.+.+|.+     +.+++++|++|+..
T Consensus        24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~  100 (387)
T PRK07777         24 TGAVNLGQGFPDEDGPPEMLEAAQEAIAG---GVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAA  100 (387)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence            35688854332  2345677777666653   11222223345566666666666666642     35555666778887


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|......++..|.+++.++..+.+                                    
T Consensus       101 ~~~~~~~--~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~------------------------------------  142 (387)
T PRK07777        101 AVLGLVE--PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDG------------------------------------  142 (387)
T ss_pred             HHHHhcC--CCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCcc------------------------------------
Confidence            7877765  99999999999988887777777766544321000                                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                             .+.                                             ..|.+.+++
T Consensus       143 -----------------------~~~---------------------------------------------~~d~~~l~~  154 (387)
T PRK07777        143 -----------------------RGF---------------------------------------------ALDLDALRA  154 (387)
T ss_pred             -----------------------CCC---------------------------------------------cCCHHHHHH
Confidence                                   000                                             013344444


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+    .++++++++++|+||||.+++   +++|.++|+++++++|+||+|....+ +....++....+ ..+.++++.|
T Consensus       155 ~~----~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S  229 (387)
T PRK07777        155 AV----TPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPG-MRERTVTISS  229 (387)
T ss_pred             hc----CcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCC-CcCcEEEEee
Confidence            33    346889999999999999998   78999999999999999999984433 222222222222 1357899999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      |||.+|.+|   ||+++++++++.+........+  ..+.+.+.++...+... +.+++++++.++++++.+.+.|++.+
T Consensus       230 ~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~  306 (387)
T PRK07777        230 AAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTY--VGGAPFQPAVAHALDHE-DAWVAALRDSLQAKRDRLAAGLAEAG  306 (387)
T ss_pred             chhhccCcCceeEEEecCHHHHHHHHHHHhhccc--CCCCHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999668   9999999999888765543322  34445555555556432 35667788999999999999999988


Q ss_pred             CccccCCCc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPSH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       404 ~~~~~~~~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.+..+.++ +++++++.  ..+..++++.|++++||.+.|+..+..  +.+.+++|++++  .+++++++++++|+++.
T Consensus       307 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~--~~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        307 FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC--KRDDTLDEAIRRLRALR  384 (387)
T ss_pred             CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence            877766655 45556542  235789999997578999999985432  234679999998  36899999999998754

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.96  E-value=1.8e-26  Score=239.23  Aligned_cols=361  Identities=20%  Similarity=0.188  Sum_probs=238.5

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-C-CCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-Q-KEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-~~~~i~~~sGt~a   87 (514)
                      .+|+.|+|+.++   ..+|  ||+|.+++.++++++....++..    ..+...++++++++++ + .++++|++||++|
T Consensus        40 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~----~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA  115 (433)
T PRK08117         40 VDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVI----YYESILKLAEELAEITPGGLDCFFFSNSGAEA  115 (433)
T ss_pred             CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc----CCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence            367777777543   2344  79999999999998654332211    3477889999999998 3 4566777999999


Q ss_pred             cccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCee--eccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         88 NDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKI--IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        88 ~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++.+++.... .++...|.++..+|..+..++...+....  ...+..              .+      ++.       
T Consensus       116 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~--------------~~------~~~-------  168 (433)
T PRK08117        116 IEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPL--------------LG------SVY-------  168 (433)
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCC--------------CC------CcE-------
Confidence            9999975332 23445556666666666655443321110  000000              00      000       


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                                            .++.|..+.  . ..+........++
T Consensus       169 ------------------------------------------------------~~~~~~~~~--~-~~~~~~~~~~~~~  191 (433)
T PRK08117        169 ------------------------------------------------------QAPYPYCDR--C-PKGEDPEVCFLEC  191 (433)
T ss_pred             ------------------------------------------------------EeCCCcccc--c-cccCchhHHHHHH
Confidence                                                                  000000000  0 0000000111235


Q ss_pred             hhHHHHHHhhc-cCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccCCCcc
Q psy16848        245 VNHLTQVLENM-DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERDGQLH  318 (514)
Q Consensus       245 ~~~l~~~l~~~-~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~~~~~  318 (514)
                      ++.+++.+++. ..+++++|+++++++..|.+.+    +++|+++|++||+++|+||+|+ | +|+.|.++. +..+.  
T Consensus       192 ~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G-~gr~G~~~~~~~~gv--  267 (433)
T PRK08117        192 LRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-G-FGRTGEWFAAQTFGV--  267 (433)
T ss_pred             HHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-c-cCccccchhHhhcCC--
Confidence            66677777652 2356899999999999999988    9999999999999999999999 3 344443332 33443  


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .+|++  |++|++++ |   |++++++++.+.+.......  +.+.+++.++++.++|+.+.++.   +.++++++.+++
T Consensus       268 ~pDi~--t~sK~lg~-G~pigav~~~~~i~~~~~~~~~~~--T~~~np~~~aaa~a~L~~l~~~~---l~~~~~~~g~~l  339 (433)
T PRK08117        268 VPDIM--TIAKGIAS-GLPLSAVVASKELMEQWPLGSHGT--TFGGNPVACAAALATLEVIKEEK---LLDNANEMGAYA  339 (433)
T ss_pred             CCCEe--ehhhhccC-CCcceeEEEcHHHHhhccCCCCCC--CCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHH
Confidence            68887  99999986 5   88899999888775433333  45789999999999999885444   677788888888


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCC------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGN------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      ++.|+++  .++.   +...+.++.+++.+      ......+.+.++ ++||.+.+..     ...+.+|++++..+|+
T Consensus       340 ~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g-----~~~~~lRl~p~~~~t~  413 (433)
T PRK08117        340 LERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCG-----NAGNVLRMIPPLTVTK  413 (433)
T ss_pred             HHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecC-----CCCCEEEEeCCccCCH
Confidence            8888775  2332   23345577777632      123456778885 8999886421     1246899999999999


Q ss_pred             HHHHHHHHHHHHHHHHc
Q psy16848        465 EMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~  481 (514)
                      +++++++++|.++++++
T Consensus       414 ~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        414 EEIDEGLDILDEALTEY  430 (433)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998765

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.96  E-value=1.2e-26  Score=238.99  Aligned_cols=344  Identities=17%  Similarity=0.206  Sum_probs=227.9

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a   87 (514)
                      +|++|+|+.+.   ..++  ||++.+++.+++++.......    ....+...++.+++++++.   .++++|++||++|
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~----~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA  113 (421)
T PRK09792         38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQ----IVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEA  113 (421)
T ss_pred             CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccC----ccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHH
Confidence            66677777432   2223  899999999999985322111    1124666788888988864   2578899999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccc
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICP  165 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  165 (514)
                      ++.|++...                                              ..+++++++.++|.||..  +.+. 
T Consensus       114 ~e~AlklAr----------------------------------------------~~tgr~~ii~~~~~yHG~t~~~~s-  146 (421)
T PRK09792        114 VENAVKIAR----------------------------------------------AHTGRPGVIAFSGGFHGRTYMTMA-  146 (421)
T ss_pred             HHHHHHHHH----------------------------------------------HhcCCCeEEEECCCcCCccHHHHh-
Confidence            999995432                                              234556677777777521  1100 


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec----
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR----  241 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~----  241 (514)
                                                 .++.                   ..+   ....+.. + ..+...+++|    
T Consensus       147 ---------------------------~~~~-------------------~~~---~~~~~~~-~-~~~~~~v~~p~~~~  175 (421)
T PRK09792        147 ---------------------------LTGK-------------------VAP---YKIGFGP-F-PGSVYHVPYPSDLH  175 (421)
T ss_pred             ---------------------------hcCC-------------------Ccc---cccCCCC-C-CCCcEEcCCCcccc
Confidence                                       0000                   000   0000000 0 0011111111    


Q ss_pred             ----CCChhHHHHHHhhc-cCCCceEEEEecCCCCCcccc-C---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc
Q psy16848        242 ----HNDVNHLTQVLENM-DVKIPKLVAFETVHSMTGAIC-P---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG  311 (514)
Q Consensus       242 ----~~d~~~l~~~l~~~-~~~~~~~vv~~~~~nptG~~~-~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~  311 (514)
                          .++++.+++.+++. ..+++++|+++++++++|... |   +++|+++|++||+++|+||+++ +|+.|..+  ..
T Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~--a~  253 (421)
T PRK09792        176 GISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLF--AM  253 (421)
T ss_pred             cccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh--HH
Confidence                13456677777642 235689999999999999876 5   8999999999999999999999 55554321  11


Q ss_pred             ccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        312 ERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       312 ~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      ...+.  .+|++  |++|++++ |   |++++++++.+.+.......  +.+.+++.++++.++++.+.++.   ..+++
T Consensus       254 ~~~~~--~pDi~--t~gK~l~~-G~pigav~~~~~i~~~~~~~~~~~--T~~gnpl~~aaa~a~l~~l~~~~---~~~~~  323 (421)
T PRK09792        254 DHYAD--KPDLM--TMAKSLAG-GMPLSGVVGNANIMDAPAPGGLGG--TYAGNPLAVAAAHAVLNIIDKES---LCERA  323 (421)
T ss_pred             HhcCC--CCcEE--EeehhhcC-CCceEEEEEcHHHHhccCCCCcCC--CCCCCHHHHHHHHHHHHHHHhhh---HHHHH
Confidence            23333  68887  99999986 5   88999999988776443333  55789999999999999886543   56666


Q ss_pred             HHHHHHHHHHHHhC--CCcc---ccCCCcEEEEEeCCC-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        389 QDIVAYLRNELIQI--GFPV---EHTPSHIIPIKIGNP-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       389 ~~~~~~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      +++.+++.+.|+++  .++.   +...|.++++++++.       .....+...++ ++||.+.+.     ....+.+|+
T Consensus       324 ~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~-----g~~~~~irl  397 (421)
T PRK09792        324 NQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRAL-AQGLLLLTC-----GAYGNVIRF  397 (421)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHH-HCCcEEeec-----CCCCCEEEE
Confidence            67777777766654  2322   233467888888643       23567888886 899998521     112578999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .++..++++|++++++++.++++
T Consensus       398 ~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        398 LYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             eCCCcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999998874

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.96  E-value=3.4e-26  Score=236.26  Aligned_cols=218  Identities=23%  Similarity=0.314  Sum_probs=165.4

Q ss_pred             hhHHHHHHhhcc-CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        245 VNHLTQVLENMD-VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       245 ~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                      .+.+++.+++.. .+++++|++++.+|++|.+++    +++|.++|++||+++|+||+|+ +|+.|...  .....+.  
T Consensus       189 ~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~--a~~~~~~--  264 (443)
T PRK08360        189 VEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWF--AIEHFGV--  264 (443)
T ss_pred             HHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccch--hhhhcCC--
Confidence            445666665432 367999999999999999887    8999999999999999999999 55544311  1123343  


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .+|++  +++|++++ |   |++++++++.+.+......  ++.+.++..++++.++++.+.++.   +.++++++.+++
T Consensus       265 ~pDii--tlsK~l~~-G~pigav~~~~~i~~~~~~~~~~--~T~~~~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l  336 (443)
T PRK08360        265 EPDII--TLGKPLGG-GLPISATIGRAEIMDSLPPLAHA--FTLSGNPVASAAALAVIEEIEEKN---LLKRAEKLGNYT  336 (443)
T ss_pred             CCCEE--EecccccC-CceeEEEEEcHHHHhhhcCCCCC--CCCCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHH
Confidence            67888  88999986 5   9999999999888644333  355788999999999999886554   678888888888


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      ++.|+++  ..++   +...|.++.+++.+.        .....+...++ ++||.+.+.       ..+.+|++++..+
T Consensus       337 ~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~~lr~~P~l~~  408 (443)
T PRK08360        337 KKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFF-------SGNVLRIQPPLTI  408 (443)
T ss_pred             HHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeec-------CCCEEEEeCCCCC
Confidence            8888765  3332   234566888777421        12456778886 899998632       2368999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHcC
Q psy16848        463 TREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~~  482 (514)
                      |++|+++++++++++++.+.
T Consensus       409 t~~~id~~~~~l~~~l~~~~  428 (443)
T PRK08360        409 EKEVLDEGLDILEEAIEDVE  428 (443)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.96  E-value=9.6e-27  Score=238.97  Aligned_cols=219  Identities=21%  Similarity=0.246  Sum_probs=161.3

Q ss_pred             ChhHHHHHHhhcc--CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCC
Q psy16848        244 DVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQ  316 (514)
Q Consensus       244 d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~  316 (514)
                      +++.+++.+.+..  .+++++|++++++++.|...+    +++|+++|++||+++|+||+++ +|+.|+.+  ..+..++
T Consensus       177 ~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~--a~~~~~v  254 (412)
T TIGR02407       177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFF--SFEPAGI  254 (412)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhH--HhcccCC
Confidence            4666777776432  246799999999999998654    8999999999999999999998 65554321  1223444


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH-hhhchHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI-LSSQEGVELRAKHQDIV  392 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~  392 (514)
                        .+|++  +++|++++.|   |++++++++ +.+.......  +++.+++.++++.++++. +.+..   +.++.+++.
T Consensus       255 --~PDi~--~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~--T~~gnpl~~aaa~a~l~~~i~~~~---l~~~~~~~g  324 (412)
T TIGR02407       255 --EPDIV--CLSKSISGYGLPLALTLIKPEL-DVWKPGEHNG--TFRGNNLAFVTATAALEYYWSDDA---FEKAVQRKS  324 (412)
T ss_pred             --CCCEE--EechhccCCccceeEEEEchhh-hccCCCccCC--CCCccHHHHHHHHHHHHHHhcccH---HHHHHHHHH
Confidence              78988  7899998745   888888775 5443322222  457889999999999995 54433   667777777


Q ss_pred             HHHHHHHHhC----C-Ccc-ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        393 AYLRNELIQI----G-FPV-EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       393 ~~l~~~L~~~----g-~~~-~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      +++.+.|+++    + +.. +...|.++++++++......+...++ ++||.+.+..     ...+.+|++++..+|++|
T Consensus       325 ~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~-~~Gv~v~~~~-----~~~~~lr~~p~l~~t~~~  398 (412)
T TIGR02407       325 EIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAF-ENGLIIETSG-----PNDEVIKLLPPLTIDEET  398 (412)
T ss_pred             HHHHHHHHHHHhhCCCceEeeecceeEEEEEecChHHHHHHHHHHH-HCCCEEeccC-----CCCCEEEEECCCCCCHHH
Confidence            7777777653    2 211 23456788899876555678888886 8999997532     124689999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy16848        467 IDKFVTDLLAVWKS  480 (514)
Q Consensus       467 id~~~~~l~~~l~~  480 (514)
                      ++++++++++++++
T Consensus       399 i~~~~~~l~~~l~~  412 (412)
T TIGR02407       399 LQQGLDILEQAVEE  412 (412)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998753

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.96  E-value=4.2e-26  Score=235.89  Aligned_cols=344  Identities=13%  Similarity=0.102  Sum_probs=232.5

Q ss_pred             CceeeecccCC------CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEecccc
Q psy16848         17 NRVTCRLSSVQ------YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYV   86 (514)
Q Consensus        17 g~~~~d~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~   86 (514)
                      |..+|+++..+      +...+++.+++.++++....  .++....|..++.+.+.+.+.+..+    .+++++++++++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~--~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~  128 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKY--NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQ  128 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcC--CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHH
Confidence            66889996543      22357899999988875211  1122223444444444444433322    234565666678


Q ss_pred             ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      |+..++.++..  |||.|+++.+.|..........|.+++.++..                                   
T Consensus       129 al~l~~~~l~~--~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~-----------------------------------  171 (430)
T PLN00145        129 AIEIIMSVLAQ--PGANILLPRPGYPLYEARAVFSGLEVRHFDLL-----------------------------------  171 (430)
T ss_pred             HHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeeCC-----------------------------------
Confidence            88888888876  99999999999987665555555555433210                                   


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                                                                +.+++.
T Consensus       172 --------------------------------------------------------------------------~~~~~~  177 (430)
T PLN00145        172 --------------------------------------------------------------------------PERGWE  177 (430)
T ss_pred             --------------------------------------------------------------------------cccCCc
Confidence                                                                                      011222


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceE
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDI  322 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di  322 (514)
                      .+.+.+++..+++++++++++|+||||.+++   +++|.++|+++|+++|+||+|....++. ...++....  .....+
T Consensus       178 ~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~--~~~~vi  255 (430)
T PLN00145        178 VDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG--EVAPVL  255 (430)
T ss_pred             CCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc--ccCcEE
Confidence            2223333334456899999999999999999   7899999999999999999998543322 222222122  235789


Q ss_pred             EEcCCcccccCCC---eEEEe--cHHHHH------HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVG--TKNFID------TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~--~~~~~~------~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      +++||||.++.+|   ||+++  ++.+++      .+.... ..  ....+.+.+.++..+|+...+.++++.++.++++
T Consensus       256 ~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~  332 (430)
T PLN00145        256 TLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYL-NI--STDPATFVQGAIPQIIANTKEEFFTKTLGLLKET  332 (430)
T ss_pred             EEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHh-cc--cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9999999998889   99986  334433      233222 11  2345678888888888743345677889999999


Q ss_pred             HHHHHHHHHhC-CCccc-cCCC-cEEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCC
Q psy16848        392 VAYLRNELIQI-GFPVE-HTPS-HIIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT  463 (514)
Q Consensus       392 ~~~l~~~L~~~-g~~~~-~~~~-~~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t  463 (514)
                      ++.+.+.|++. ++.+. .+.+ .+++++++.     ..+..+++..|++++||.+.|+..+..   ++++|++++  .+
T Consensus       333 ~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~---~~~lRis~~--~~  407 (430)
T PLN00145        333 ADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM---KNWLRITFA--ID  407 (430)
T ss_pred             HHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC---CCeEEEEeC--CC
Confidence            99999999987 76643 3544 466676652     124567888887788999999987542   579999998  47


Q ss_pred             HHHHHHHHHHHHHHHHHcCC
Q psy16848        464 REMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~~~~  483 (514)
                      .+++++++++|++++++..+
T Consensus       408 ~~~l~~al~rl~~~~~~~~~  427 (430)
T PLN00145        408 PPSLEDGLERLKSFCLRHAK  427 (430)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            88999999999999987653

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.96  E-value=1.5e-26  Score=240.30  Aligned_cols=292  Identities=13%  Similarity=0.060  Sum_probs=212.8

Q ss_pred             HHHHHHHHhHcC----CCcEEEEeccc-cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         63 EKLEEDVAKLHQ----KEAGLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        63 ~~~~~~la~~~~----~~~~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .++++.++++++    .+..|++++|+ +++..++.+++.  |||.|+++.++|......++..|++++.++.++ +   
T Consensus       124 ~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~--pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~---  197 (431)
T PRK15481        124 PELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLL--PGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA-E---  197 (431)
T ss_pred             HHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC-C---
Confidence            445555666543    34355566654 567777777766  999999999999999888888887776554310 0   


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (431)
T PRK15481        198 --------------------------------------------------------------------------------  197 (431)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe-cCCCCCccccCH---HHHHHHHHHc-CCEE
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE-TVHSMTGAICPL---KELCEVSHQH-GALT  292 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~-~~~nptG~~~~l---~~l~~l~~~~-gv~l  292 (514)
                                              .-|.+.+++.++.    ++++++++ +||||||.+++.   ++|.++|+++ ++++
T Consensus       198 ------------------------g~~~~~l~~~~~~----~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~i  249 (431)
T PRK15481        198 ------------------------GMQPEKLERALAQ----GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLV  249 (431)
T ss_pred             ------------------------CCCHHHHHHHHhc----CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceE
Confidence                                    0134455555432    46777665 999999999995   6999999999 9999


Q ss_pred             EEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHH
Q psy16848        293 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGA  369 (514)
Q Consensus       293 i~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~  369 (514)
                      |+||+|....... ..+..+.   ..+..++++||||.++ +|   ||+++++++++.+.......  ..+.|.+.+.++
T Consensus       250 i~De~Y~~~~~~~-~~~~~~~---~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~--~~~~s~~~q~a~  322 (431)
T PRK15481        250 IIDDHFALLSSSP-YHSVIPQ---TTQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSG--TQWVSHLLQDLV  322 (431)
T ss_pred             EecCchhhhccCC-CCCCCcC---CCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhcc--ccCCCHHHHHHH
Confidence            9999999443211 1111111   2357899999999999 58   99999999998887554333  235788888888


Q ss_pred             HHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC
Q psy16848        370 REAIRILS-SQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV  447 (514)
Q Consensus       370 ~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~  447 (514)
                      ..+|+... ..++.+.++.++++++.+.+.|++.++.+..+ .+.++++.++.  +..++++.|. ++||.+.|+..+..
T Consensus       323 ~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~--~~~~~~~~l~-~~gV~v~pg~~f~~  399 (431)
T PRK15481        323 YACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDT--DSQATALTLA-KSGWLVREGEAFGV  399 (431)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCC--CHHHHHHHHH-HCCcEEecCCcccc
Confidence            88886421 23467789999999999999999988876444 45577788874  3678888885 89999999886543


Q ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        448 PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       448 ~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      ....+++|++++. .+++++++++++|++++.
T Consensus       400 ~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        400 SAPSHGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence            3335689999984 568999999999998764

>PRK08363 alanine aminotransferase; Validated

Probab=99.96  E-value=2.8e-26  Score=235.91  Aligned_cols=346  Identities=14%  Similarity=0.097  Sum_probs=230.9

Q ss_pred             cCCceeeecccCC-----CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccc
Q psy16848         15 KSNRVTCRLSSVQ-----YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCY   85 (514)
Q Consensus        15 ~~g~~~~d~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt   85 (514)
                      .+|..++|+..+.     +..++.+.+++.+.+.....   .+....|..++.+.+.+.+.+..|    .+..+++++++
T Consensus        27 ~~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~  103 (398)
T PRK08363         27 KKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHN---YYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVT  103 (398)
T ss_pred             hcCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCC---CCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHH
Confidence            3567889996433     34577899988887764211   111122334444444444433333    12345455557


Q ss_pred             cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         86 VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        86 ~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      +|+..++.+++.  +||.|+++.++|......++..|..++.+...+                                 
T Consensus       104 ~al~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~---------------------------------  148 (398)
T PRK08363        104 EALQLIFGALLD--PGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIE---------------------------------  148 (398)
T ss_pred             HHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHHcCCEEEEecccc---------------------------------
Confidence            788888888865  999999999999988877777666655442110                                 


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~  245 (514)
                                                                                                  .+++
T Consensus       149 ----------------------------------------------------------------------------~~~~  152 (398)
T PRK08363        149 ----------------------------------------------------------------------------EEGW  152 (398)
T ss_pred             ----------------------------------------------------------------------------ccCC
Confidence                                                                                        0011


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      ....+.+++...++++++++++|+||||.+++   +++|.++|+++|+++|+||+|....+.....++....  .....+
T Consensus       153 ~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~--~~~~vi  230 (398)
T PRK08363        153 QPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLT--KDVPVI  230 (398)
T ss_pred             cCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcC--cCCcEE
Confidence            11112233333446889999999999999999   8999999999999999999998443322111222111  124578


Q ss_pred             EEcCCcccccCCC---eEEEe--cHHHHHHHHhhcCce-EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVG--TKNFIDTIRSYAAGF-IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~--~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      ++.||||.++.+|   ||+++  ++++++.+....... ....+.+.+.+.++.++|... .+++.+.+++++++++++.
T Consensus       231 ~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~l~~~~~~~~~~~~~l~  309 (398)
T PRK08363        231 VMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP-MDYLEEYMKKLKERRDYIY  309 (398)
T ss_pred             EEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence            8999999987778   99987  666666654332111 012256777777777777532 4567788899999999999


Q ss_pred             HHHHhC-CCccccCCCcEEE-EEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q psy16848        397 NELIQI-GFPVEHTPSHIIP-IKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVT  472 (514)
Q Consensus       397 ~~L~~~-g~~~~~~~~~~~~-i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~  472 (514)
                      +.|+++ ++.+..+.++++. +.++..  .+..+++..+++++||.+.++..+. ..+++++|++++  .++++++++++
T Consensus       310 ~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~-~~~~~~iRis~~--~~~~~l~~~l~  386 (398)
T PRK08363        310 KRLNEIPGISTTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFG-EYGAGHFRLVFL--PPVEILEEAMD  386 (398)
T ss_pred             HHHhcCCCCEecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCeEEEEec--CCHHHHHHHHH
Confidence            999887 7666666666544 466642  2356676666579999999998654 334679999997  56899999999


Q ss_pred             HHHHHHHH
Q psy16848        473 DLLAVWKS  480 (514)
Q Consensus       473 ~l~~~l~~  480 (514)
                      +|++++++
T Consensus       387 ~l~~~~~~  394 (398)
T PRK08363        387 RFEEFMRE  394 (398)
T ss_pred             HHHHHHHH
Confidence            99998765

>PLN02187 rooty/superroot1

Probab=99.96  E-value=4.5e-26  Score=237.28  Aligned_cols=347  Identities=12%  Similarity=0.086  Sum_probs=230.0

Q ss_pred             CceeeecccC--CCC----CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEecccc
Q psy16848         17 NRVTCRLSSV--QYK----VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYV   86 (514)
Q Consensus        17 g~~~~d~~~~--~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~   86 (514)
                      +..++++...  ++.    ..+++.+++.+.++. +.. ..+....|..++.+.+.+.+.+.++    .++.++++++++
T Consensus        65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~-~~~-~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~  142 (462)
T PLN02187         65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS-GKG-NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQ  142 (462)
T ss_pred             CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC-CCC-CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHH
Confidence            4567888644  322    246788888887764 211 1111223333344444444433222    234444455567


Q ss_pred             ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      ++..++.+++.  |||.|+++.++|......++..|.+++.++..                                   
T Consensus       143 al~~~~~~l~~--pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~-----------------------------------  185 (462)
T PLN02187        143 GIEIVFESLAR--PNANILLPRPGFPHYDARAAYSGLEVRKFDLL-----------------------------------  185 (462)
T ss_pred             HHHHHHHHhcC--CCCEEEEeCCCCccHHHHHHHcCCEEEEEeCc-----------------------------------
Confidence            78888888876  99999999999988766666666655543220                                   


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                                                                +.+++.
T Consensus       186 --------------------------------------------------------------------------~~~~~~  191 (462)
T PLN02187        186 --------------------------------------------------------------------------PEKEWE  191 (462)
T ss_pred             --------------------------------------------------------------------------cccCCc
Confidence                                                                                      011222


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceE
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di  322 (514)
                      .+.+.+++..+++++++++++|+||||.+++   +++|.++|++||+++|+||+|....++ ....++.....  ..+.+
T Consensus       192 ~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~--~~~vi  269 (462)
T PLN02187        192 IDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS--IVPVL  269 (462)
T ss_pred             cCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhcc--CCcEE
Confidence            2233333344456899999999999999999   789999999999999999999954432 22212222221  13589


Q ss_pred             EEcCCcccccCCC---eEEEec-H-H---HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGT-K-N---FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~-~-~---~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                      +++||||.++.+|   ||++++ + .   +++.+......+..+.+.+.+.+.++.++|+.....++++.++.++++++.
T Consensus       270 ~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~  349 (462)
T PLN02187        270 TLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDL  349 (462)
T ss_pred             EEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            9999999998888   999873 3 2   334555544444333345788888888888643345678889999999999


Q ss_pred             HHHHHHhCCC-c-cccCCC-cEEEEEeCC----C-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        395 LRNELIQIGF-P-VEHTPS-HIIPIKIGN----P-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       395 l~~~L~~~g~-~-~~~~~~-~~~~i~l~~----~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      +.+.|++.+. . +..+.+ .+++++++.    . .+..+++..+++++||.+.|+..+.   ..+++|++++  ..++.
T Consensus       350 l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg---~~~~iRis~~--~~~e~  424 (462)
T PLN02187        350 VCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG---LKNWMRITIG--VEAHM  424 (462)
T ss_pred             HHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC---CCCeEEEEeC--CCHHH
Confidence            9999998743 2 223444 566666542    1 1355777776679999999998653   3579999998  46889


Q ss_pred             HHHHHHHHHHHHHHcCC
Q psy16848        467 IDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       467 id~~~~~l~~~l~~~~~  483 (514)
                      +++++++|.+++++..+
T Consensus       425 l~~al~rL~~~l~~~~~  441 (462)
T PLN02187        425 LEDALERLKGFCTRHAK  441 (462)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999987654

>PRK06062 hypothetical protein; Provisional

Probab=99.96  E-value=1.7e-26  Score=239.11  Aligned_cols=220  Identities=20%  Similarity=0.174  Sum_probs=163.8

Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHN  319 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~  319 (514)
                      ++.+++.++....+++++|++++++...|.+.|    +++|+++|++||+++|+||+++ +|..|..+  ..+.+++  .
T Consensus       200 ~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~--a~~~~gv--~  275 (451)
T PRK06062        200 LAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWF--AIEHFGV--V  275 (451)
T ss_pred             HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHH--HHHhcCC--C
Confidence            566677775443467899999999999999988    9999999999999999999999 54444321  2344555  7


Q ss_pred             ceEEEcCCcccccC---CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH-HHH
Q psy16848        320 MDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV-AYL  395 (514)
Q Consensus       320 ~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~-~~l  395 (514)
                      +|++  +++|.+++   +-|.+++++++.+.+........++++.+++.++++.++|+.+.++.   ..++.+++. +++
T Consensus       276 PDi~--t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l  350 (451)
T PRK06062        276 PDLI--TFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEG---IVENAARIGAEVL  350 (451)
T ss_pred             CCee--eechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence            9998  89999976   22677888888887753221222355789999999999999986655   677777776 477


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCCCc--------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGNPA--------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~~~--------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      .+.|+++  ..+.   +...|.++.+++....              ....+.+.|+ ++||++.+.        .+.+|+
T Consensus       351 ~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~--------~~~lrl  421 (451)
T PRK06062        351 GPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK-ERGLLPFVN--------GNRIHV  421 (451)
T ss_pred             HHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH-HCCcEEeec--------CCEEEE
Confidence            7777665  2332   3446667777764210              2446788886 899997531        347999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++..+|++|+++++++++++++.++
T Consensus       422 ~ppl~~t~~eid~~~~~l~~~l~~~~  447 (451)
T PRK06062        422 VPPCTVTEDEVREGLAILDAALAVAD  447 (451)
T ss_pred             ECCccCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998764

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.9e-26  Score=230.03  Aligned_cols=268  Identities=20%  Similarity=0.210  Sum_probs=218.9

Q ss_pred             CCceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecC
Q psy16848        195 GAGIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV  268 (514)
Q Consensus       195 ~~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~  268 (514)
                      ...|+.++|+++.|+.+..++..+  .++++.    .|...+...|++++.++..++..+.+.+.+...++++++++++|
T Consensus        75 ~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nP  154 (356)
T COG0079          75 PENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNP  154 (356)
T ss_pred             cceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCC
Confidence            355778999999999999999998  666654    66788899999999999655666655555555557999999999


Q ss_pred             CCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHH
Q psy16848        269 HSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKN  343 (514)
Q Consensus       269 ~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~  343 (514)
                      |||||...+.++|.+++...  +.+||+||+|..... ...   .+... ..++.+++.||||.+|..|   ||++++++
T Consensus       155 NNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~-~~~---~~l~~-~~~nlivlRTfSKa~gLAGlRlGy~ia~~~  229 (356)
T COG0079         155 NNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP-ESS---LELLK-YPPNLIVLRTFSKAFGLAGLRVGYAIANPE  229 (356)
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC-chh---hhhcc-CCCCEEEEEecHHhhhcchhceeeccCCHH
Confidence            99999999988888777765  889999999994332 111   11111 2355899999999999988   99999999


Q ss_pred             HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc-cccCCCcEEEEEeCCCc
Q psy16848        344 FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP-VEHTPSHIIPIKIGNPA  422 (514)
Q Consensus       344 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~i~l~~~~  422 (514)
                      +++.+.+.+.+|    +.|.+.++++.++++.-  +.+++.++.+.+.++++.+.|+.+++. +.++.++|+.+++++..
T Consensus       230 ~i~~l~~vr~p~----~v~~~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~~~~~~  303 (356)
T COG0079         230 LIAALNKVRPPF----NVSSPALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRVPDAE  303 (356)
T ss_pred             HHHHHHHhcCCC----CCCHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEECCCcc
Confidence            999999999888    78899999999988743  677889999999999999999999854 67788999999988644


Q ss_pred             cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       423 ~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                       ...+.+.|+ ++||.++....  .+..++++|++++   |+++.++++++|++++..
T Consensus       304 -~~~l~~~L~-~~giivR~~~~--~~~~~~~lRitvg---t~een~~ll~AL~~~~~~  354 (356)
T COG0079         304 -AAALAEALL-KKGILVRDCSS--VGLLPGYLRITVG---TPEENDRLLAALREVLKG  354 (356)
T ss_pred             -HHHHHHHHH-HCCEEEEeCCC--CCCCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence             567888896 89999997654  2334679999999   899999999999998764

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.96  E-value=2.5e-26  Score=224.23  Aligned_cols=325  Identities=20%  Similarity=0.177  Sum_probs=238.0

Q ss_pred             ChhHHHHHHHHHHHh-CCCCCCcCcccC--cchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhcc--c--cCCC
Q psy16848         31 PKGGRKCLGEALEKF-GTGAGGTRNISG--NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLG--K--MIPG  101 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~--~--~~~g  101 (514)
                      +|++.+++...+... |..  ++...+|  .....++.++.+++++|.+  +.+|+++||+++..+|...+  .  ..+|
T Consensus        14 ~~~v~~~m~~~~~~~fgNP--sS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~   91 (386)
T COG1104          14 DPEVLEAMLPYLTEVFGNP--SSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKG   91 (386)
T ss_pred             CHHHHHHHHHHHHhhcCCc--cchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCC
Confidence            689999999999875 443  3344445  3677889999999999865  35666667999888887732  2  2368


Q ss_pred             ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEE
Q psy16848        102 LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF  181 (514)
Q Consensus       102 d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (514)
                      .+|+++..+|+++++.++..                                                            
T Consensus        92 ~HIIts~iEH~aVl~~~~~L------------------------------------------------------------  111 (386)
T COG1104          92 KHIITSAIEHPAVLNTCRYL------------------------------------------------------------  111 (386)
T ss_pred             CeEEEcccccHHHHHHHHHH------------------------------------------------------------
Confidence            89999999999999776544                                                            


Q ss_pred             eeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-C----ChhHHHHHHhhcc
Q psy16848        182 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-N----DVNHLTQVLENMD  256 (514)
Q Consensus       182 ~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~----d~~~l~~~l~~~~  256 (514)
                                                                       ...|.++.+++. .    +.+++++.|    
T Consensus       112 -------------------------------------------------e~~g~~Vtyl~V~~~G~v~~e~L~~al----  138 (386)
T COG1104         112 -------------------------------------------------ERQGFEVTYLPVDSNGLVDLEQLEEAL----  138 (386)
T ss_pred             -------------------------------------------------HhcCCeEEEeCCCCCCeEcHHHHHHhc----
Confidence                                                             111223333331 1    344444444    


Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      .++|.+|.+.+.||.+|.+.|+++|.++|+++|+++++|.++++|..        +.+....+.|++.+|-||..|+.| 
T Consensus       139 ~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gki--------pi~~~~~~vD~ls~SaHK~~GpkGi  210 (386)
T COG1104         139 RPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKI--------PIDLEELGVDLLSFSAHKFGGPKGI  210 (386)
T ss_pred             CCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCce--------eccccccCcceEEeehhhccCCCce
Confidence            46699999999999999999999999999999999999999998875        233223368999999999999988 


Q ss_pred             eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcccc
Q psy16848        336 GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPVEH  408 (514)
Q Consensus       336 G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~  408 (514)
                      |+++.++...-  .+...+.     ..+.+.+.+..+++.++++.. .+.++....++..+++++.+.|.+.  .+.+..
T Consensus       211 GaLyv~~~~~~--~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a-~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g  287 (386)
T COG1104         211 GALYVRPGVRL--EPLIHGGGQERGLRSGTENVPGIVGFGKAAEIA-VEELEEENARLRKLRDRLEDGLLEIIPDVYLNG  287 (386)
T ss_pred             EEEEECCCCcc--CceeccCcCCCCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcC
Confidence            99987654321  1111111     113355677777777777765 4566778889999999999999976  333322


Q ss_pred             C----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEEeCCCCCHHHHH
Q psy16848        409 T----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       409 ~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~~~~~~t~e~id  468 (514)
                      .    -.+.+.+.++. ...+.+...| +.+||+++.|+.|....                ....+||+++..+|++|++
T Consensus       288 ~~~~rlP~~~~~~f~g-v~gE~ll~~L-~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~  365 (386)
T COG1104         288 DDEPRLPNILNFSFPG-VEGESLLLAL-DLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEID  365 (386)
T ss_pred             CcccCCCCeEEEEeCC-CcHHHHHHhc-cccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHH
Confidence            2    12366677765 3466677777 68999999999887542                1379999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q psy16848        469 KFVTDLLAVWKSLDL  483 (514)
Q Consensus       469 ~~~~~l~~~l~~~~~  483 (514)
                      ++++.+.+++++++.
T Consensus       366 ~~~~~l~~~i~~lr~  380 (386)
T COG1104         366 AAAEALKEIIKRLRE  380 (386)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998753

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.96  E-value=2.6e-26  Score=236.42  Aligned_cols=342  Identities=16%  Similarity=0.146  Sum_probs=227.0

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a   87 (514)
                      +|++|+|+.+.   ..++  ||++.+++.+++++......    .....+...++.+++++++.   .++++|++|||+|
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~----~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA  113 (421)
T PRK06777         38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAY----QIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEA  113 (421)
T ss_pred             CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccc----cccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHH
Confidence            56667776432   1223  89999999999998532211    11124566788889998864   3578999999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccc
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICP  165 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  165 (514)
                      ++.|++..                                              +..+++++++.+++.||..  +.+. 
T Consensus       114 ~e~AlklA----------------------------------------------r~~tgr~~ii~~~~~yHG~t~~~~s-  146 (421)
T PRK06777        114 VENAVKIA----------------------------------------------RAYTGRPGVIAFGGAFHGRTLLTMA-  146 (421)
T ss_pred             HHHHHHHH----------------------------------------------HHhhCCCeEEEEcCCcCCccHHHHh-
Confidence            99999533                                              2334566677777777521  1110 


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec----
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR----  241 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~----  241 (514)
                                                 -++..                   .+       +.......-..+..++    
T Consensus       147 ---------------------------~t~~~-------------------~~-------~~~~~~~~~~~~~~~~~p~~  173 (421)
T PRK06777        147 ---------------------------LTGKV-------------------AP-------YKVGFGPFPGSIFHALYPNE  173 (421)
T ss_pred             ---------------------------hcCCC-------------------cc-------cccCCCCCCCCcEEcCCCcc
Confidence                                       00000                   00       0000000000011111    


Q ss_pred             ------CCChhHHHHHHhhc-cCCCceEEEEecCCCCCccc-cC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCC
Q psy16848        242 ------HNDVNHLTQVLENM-DVKIPKLVAFETVHSMTGAI-CP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAG  309 (514)
Q Consensus       242 ------~~d~~~l~~~l~~~-~~~~~~~vv~~~~~nptG~~-~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~  309 (514)
                            ..+++.+++.+.+. ..++++++++++++++.|.. .|   +++|+++|++||+++|+||+|+ +|+.|...  
T Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~--  251 (421)
T PRK06777        174 LHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF--  251 (421)
T ss_pred             ccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchh--
Confidence                  11345566666542 34568999999999999965 44   8999999999999999999999 55544311  


Q ss_pred             ccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        310 IGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       310 ~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                      .....+.  .+|++  +++|.+++ |   |++++++++.+.+.......  +++.+++.++++.++|+.+.++   ++.+
T Consensus       252 ~~~~~~~--~pDiv--~~sK~l~~-G~pigav~~~~~i~~~~~~~~~~~--T~~~~p~~~aaa~a~L~~~~~~---~l~~  321 (421)
T PRK06777        252 AMEYYDV--KPDLI--TMAKSLGG-GMPISAVVGRAEVMDAPAPGGLGG--TYAGNPLAVAAALAVLDVIAEE---KLCQ  321 (421)
T ss_pred             hhhhcCC--CCCEE--eeehhhcC-CCceEEEEEcHHHHhccCCCCCCC--CCCcCHHHHHHHHHHHHHHHhc---cHHH
Confidence            1223333  68888  89999985 6   89999999988876544333  5578999999999999987554   4788


Q ss_pred             HHHHHHHHHHHHHHhC--CC---ccccCCCcEEEEEeCCC-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848        387 KHQDIVAYLRNELIQI--GF---PVEHTPSHIIPIKIGNP-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI  454 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~--g~---~~~~~~~~~~~i~l~~~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i  454 (514)
                      +.+++.+++.+.|+++  ..   ..+.+.|.++.+++...       .....+...++ ++||.+.++..+     .+.+
T Consensus       322 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~~~~-----g~~l  395 (421)
T PRK06777        322 RALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQAL-EEGLLLLSCGVH-----GNVI  395 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHH-hCCeEEeecCCC-----CCEE
Confidence            8899999999888875  12   22456677777666431       11344555565 899999875421     3589


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        455 RLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       455 Rl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      |+.+++..+++++++++++|++++.
T Consensus       396 r~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        396 RFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998763

>PRK02948 cysteine desulfurase; Provisional

Probab=99.96  E-value=2.7e-26  Score=234.79  Aligned_cols=336  Identities=16%  Similarity=0.159  Sum_probs=230.8

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcc-cCcchHHHHHHHHHHhHcCCC-cEEEEec-cccccccchhhcc
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNI-SGNSLFHEKLEEDVAKLHQKE-AGLVFTS-CYVANDSTLFTLG   96 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~-~~i~~~s-Gt~a~~~~l~~l~   96 (514)
                      |.|-++... -++.+.+++.+.++.+..+.++.... .......+++++.+++++|.+ +.+++++ +|+++..++.++.
T Consensus         3 yld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~   81 (381)
T PRK02948          3 YLDYAATTP-MSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLL   81 (381)
T ss_pred             eccCCCCCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence            344444443 36789999999888654433322211 112467889999999999843 4555554 5788877776664


Q ss_pred             c--cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         97 K--MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        97 ~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      .  ..+||.|++++.+|+++....+.                                                      
T Consensus        82 ~~~~~~g~~vv~~~~~h~s~~~~~~~------------------------------------------------------  107 (381)
T PRK02948         82 NALPQNKKHIITTPMEHASIHSYFQS------------------------------------------------------  107 (381)
T ss_pred             HhccCCCCEEEECCcccHHHHHHHHH------------------------------------------------------
Confidence            2  24789999999999887644321                                                      


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-----CChhHHH
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLT  249 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~  249 (514)
                                                                             +...|++++.++.     .|.+.++
T Consensus       108 -------------------------------------------------------~~~~g~~v~~v~~~~~~~~d~~~l~  132 (381)
T PRK02948        108 -------------------------------------------------------LESQGYTVTEIPVDKSGLIRLVDLE  132 (381)
T ss_pred             -------------------------------------------------------HHhCCCEEEEEeeCCCCCCCHHHHH
Confidence                                                                   1112333333331     1344444


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      +.+    .++++++++++++||||.+.|+++|.++|+++|+++++|+++.+|...        ......+.|++++|+||
T Consensus       133 ~~l----~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~--------~~~~~~~~d~~~~s~~K  200 (381)
T PRK02948        133 RAI----TPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLP--------IDVFEMGIDSLSVSAHK  200 (381)
T ss_pred             Hhc----CCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccc--------cCcccCCCCEEEecHHh
Confidence            444    346889999999999999999999999999999999999999876531        11113478999999999


Q ss_pred             cccCCC-eEEEecHHH-HHHHHhh---cCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        330 AFGNIG-GYIVGTKNF-IDTIRSY---AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       330 ~lg~~G-G~l~~~~~~-~~~l~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      ++|+.| |+++.++++ ...+...   ...+ ...+.+.+.+.++.++++... +..++.+++++++++++.+.|+++++
T Consensus       201 ~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~  278 (381)
T PRK02948        201 IYGPKGVGAVYINPQVRWKPVFPGTTHEKGF-RPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTLPL  278 (381)
T ss_pred             cCCCCcEEEEEEcCCCCCCCcccCCCCCCCc-CCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999888 888877654 1111100   0011 123567788888888888763 46778899999999999999999876


Q ss_pred             ccccC--C----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----------------CCCcEEEEEeCCCC
Q psy16848        405 PVEHT--P----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----------------VGEEKIRLAPTPFH  462 (514)
Q Consensus       405 ~~~~~--~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----------------~~~~~iRl~~~~~~  462 (514)
                      ++...  .    ..++.+.++. ....++...| +++||.++.+..|..+                ...+++|++++.++
T Consensus       279 ~v~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~  356 (381)
T PRK02948        279 PIEVEGHSTSCLPHIIGVTIKG-IEGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQT  356 (381)
T ss_pred             CEEEeCCCccCcCCEEEEEeCC-CCHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCC
Confidence            54422  1    1244444443 3456777788 5899999987754321                12479999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      |++|++++++.|+++++.+
T Consensus       357 t~~di~~l~~~l~~~~~~~  375 (381)
T PRK02948        357 TKDQIDTTIHALETIGNQF  375 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987654

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.96  E-value=3e-26  Score=236.74  Aligned_cols=351  Identities=17%  Similarity=0.170  Sum_probs=236.2

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   ..+|  ||++.+++.+++++.......    .-..+...++.+++++.+.  .++++|++||++|+
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~  115 (423)
T PRK05964         40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFA----GFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAV  115 (423)
T ss_pred             CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCcccc----ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            56666666432   2223  799999999999985432110    1124667889999999873  56789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      +.|++.....                                        .-.+..++|+++|.+++.||....      
T Consensus       116 e~A~klar~~----------------------------------------~~~~~~~~r~~ii~~~~~yHG~t~------  149 (423)
T PRK05964        116 EVALKMALQY----------------------------------------WRNRGEPGRSRFLSLRGGYHGDTI------  149 (423)
T ss_pred             HHHHHHHHHH----------------------------------------HHhcCCCCCcEEEEEcCCcCCccH------
Confidence            9999654320                                        000112457788888888862110      


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC----
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND----  244 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d----  244 (514)
                                          |...                      +.+... ....+.. + ..+...++++.+|    
T Consensus       150 --------------------~~ls----------------------~~~~~~-~~~~~~~-~-~~~~~~~~~~~~d~~~~  184 (423)
T PRK05964        150 --------------------GTMS----------------------VGDRGG-MHALYTP-L-LFEQVTAPFPPDGYEQA  184 (423)
T ss_pred             --------------------HHHh----------------------cCCCcc-ccccccC-c-CCCCEEeCCCcchhHHH
Confidence                                0000                      000000 0000000 0 0122334444455    


Q ss_pred             -hhHHHHHHhhccCCCceEEEEec-CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc-cccCCC
Q psy16848        245 -VNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI-GERDGQ  316 (514)
Q Consensus       245 -~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~-~~~~~~  316 (514)
                       .+.+++.+++. .+++++|++++ +++.+|...+    +++|+++|++||+++|+||+++ +|..|   ..+ .+..+.
T Consensus       185 ~~~~l~~~l~~~-~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~~v  260 (423)
T PRK05964        185 TLDALEALLEKH-AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG---TLFACEQAGV  260 (423)
T ss_pred             HHHHHHHHHHhC-CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhHHHhcCC
Confidence             66777777643 35688999999 6888898875    8999999999999999999997 55444   222 233444


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhh--cCc--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSY--AAG--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~--~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                        .+|++  +++|++++.+   |++++++++.+.+...  ...  .+.+++.+++.++++.++++.+.++.   +.++..
T Consensus       261 --~pDi~--~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~---~~~~~~  333 (423)
T PRK05964        261 --SPDIM--CLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEP---VLERVA  333 (423)
T ss_pred             --CCCee--eeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHH
Confidence              78988  8899996522   7789999999887532  111  12234689999999999999886554   678888


Q ss_pred             HHHHHHHHHHHhC-CCccc---cCCCcEEEEEeCCCc---cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        390 DIVAYLRNELIQI-GFPVE---HTPSHIIPIKIGNPA---LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       390 ~~~~~l~~~L~~~-g~~~~---~~~~~~~~i~l~~~~---~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      ++.+++++.|+++ +.+.+   ...+.++.+.+.+..   ....+.+.|+ ++||.+.+.        .+.+|++++..+
T Consensus       334 ~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~-~~Gv~v~~~--------~~~lR~~p~l~~  404 (423)
T PRK05964        334 ALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFAL-ERGVLLRPL--------GNTIYLMPPYII  404 (423)
T ss_pred             HHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHH-HCCeEEEec--------CCEEEEeCCccc
Confidence            8899999888876 43332   345667778876532   3567888886 899999742        247999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      |++|+|+++++++++++++
T Consensus       405 t~edId~~v~~l~~al~~~  423 (423)
T PRK05964        405 TAEELDRITDAIVEVADEL  423 (423)
T ss_pred             CHHHHHHHHHHHHHHHhhC
Confidence            9999999999999998763

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.96  E-value=2.8e-26  Score=236.68  Aligned_cols=355  Identities=16%  Similarity=0.175  Sum_probs=226.2

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a   87 (514)
                      +|++|+||.+.   ..+|  ||++.+++.+++++......    .....+...++.+++++++.   .++++|++||++|
T Consensus        31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA  106 (420)
T TIGR00700        31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCF----MVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEA  106 (420)
T ss_pred             CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccc----cccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHH
Confidence            66677777432   2223  89999999999998532211    11123556788888988873   3578899999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccc
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICP  165 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  165 (514)
                      ++.|++..                                              +..+++++++.++++||..  +.+. 
T Consensus       107 ~e~AlklA----------------------------------------------r~~tgr~~ii~~~~~yHG~t~~~~~-  139 (420)
T TIGR00700       107 VENAVKIA----------------------------------------------RSYTGRPGVVAFDHGFHGRTNMTMA-  139 (420)
T ss_pred             HHHHHHHH----------------------------------------------HHhcCCCcEEEECCCcCCCcHHHHH-
Confidence            99999533                                              3334566777777777621  1110 


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC--ceeeecchHHHHhhCCCCEEEecCC
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP--EVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                            +.               |.......+              ...+...  .++.|..+....   +..  ..+.+
T Consensus       140 ------~~---------------~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~  179 (420)
T TIGR00700       140 ------LT---------------AKVMPYKSG--------------FGPFAPEVYRAPLPYPYRDGL---LDK--QLSTD  179 (420)
T ss_pred             ------hc---------------CCCcccccC--------------CCCCCCCcEEeCCCccccccc---ccc--chhHH
Confidence                  00               000000000              0000000  011111110000   000  00111


Q ss_pred             -ChhHHHHHHh-hccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCC
Q psy16848        244 -DVNHLTQVLE-NMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQ  316 (514)
Q Consensus       244 -d~~~l~~~l~-~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~  316 (514)
                       +++.+++.+. +...+++++|++++++..+|..++    +++|+++|++||+++|+||+|+ +++.|...  .....+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~--a~~~~~~  257 (420)
T TIGR00700       180 GELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMF--ACEHEGP  257 (420)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhH--HHhhcCC
Confidence             2445566553 223467899999999999999887    8999999999999999999999 55554311  1122333


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                        .+|++  +++|.+++ |   |++++++++.+.+.......  +.+.+++.++++.++++.+.++.   ..++.+++.+
T Consensus       258 --~pDi~--~lsK~l~~-G~pig~v~~~~~i~~~~~~~~~~~--T~~~~pl~~aaa~a~l~~l~~~~---~~~~~~~~g~  327 (420)
T TIGR00700       258 --EPDLI--TTAKSLAD-GLPLSGVTGRAEIMDAPAPGGLGG--TYAGNPLACAAALAVLAIIESEG---LIERARQIGR  327 (420)
T ss_pred             --CCCEE--EeeccccC-CcceEEEEecHHHHhhcCCCCcCC--CCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence              78888  79999985 6   99999999988876543333  55788999999999999876555   5556666666


Q ss_pred             HHHHHHHhC----C-CccccCCCcEEEEEeCCC-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        394 YLRNELIQI----G-FPVEHTPSHIIPIKIGNP-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       394 ~l~~~L~~~----g-~~~~~~~~~~~~i~l~~~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++++.|+++    + +..+.+.|.++.+++.+.       .....+...++ ++||.+.|+..+     .+.+|++++..
T Consensus       328 ~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~p~~~f-----~~~lRl~p~l~  401 (420)
T TIGR00700       328 LVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAH-AAGLLLLTCGMF-----GNIIRFLPPLT  401 (420)
T ss_pred             HHHHHHHHHHhhCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeccCCC-----CCEEEEECCCC
Confidence            666666554    2 223345677888876321       22455666674 899999876432     36899999888


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~  479 (514)
                      ++++++++++++|++++.
T Consensus       402 ~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       402 IGDELLSEGLDILCAILA  419 (420)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            899999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.95  E-value=2.9e-26  Score=236.47  Aligned_cols=347  Identities=16%  Similarity=0.124  Sum_probs=226.8

Q ss_pred             CceeeecccCC--CCCChhHHHHHHHHHHHhCC--CCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccc
Q psy16848         17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGT--GAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVAND   89 (514)
Q Consensus        17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~   89 (514)
                      +..++|+..++  +..+|.+.+++.+.+.....  ...++....|..++.+.+.+.+.+..|.   +..|++|+|++..+
T Consensus        33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al  112 (409)
T PRK07590         33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDT  112 (409)
T ss_pred             CCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHH
Confidence            45678886543  33467889999888876321  1112222334455555555554443332   34566777766543


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++..+..  +||.|+++.++|......++..|.+.+..+.                        |.|            
T Consensus       113 ~~l~~~~~--~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~------------------------~~~------------  154 (409)
T PRK07590        113 GNILDIFG--PDNTIAVTDPVYPVYVDTNVMAGRTGEANED------------------------GRY------------  154 (409)
T ss_pred             HHHHHhcC--CCCEEEEeCCCCcchHHHHHHcCCccccccc------------------------ccc------------
Confidence            34445544  9999999999999998888877765221000                        000            


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC---CChh
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH---NDVN  246 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~---~d~~  246 (514)
                                                                                       .+++.++.   +++.
T Consensus       155 -----------------------------------------------------------------~~~~~v~~~~~~~~~  169 (409)
T PRK07590        155 -----------------------------------------------------------------SGIVYLPCTAENNFV  169 (409)
T ss_pred             -----------------------------------------------------------------cceeEeecccccCCc
Confidence                                                                             01112211   0111


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceE
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDI  322 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di  322 (514)
                      ..   +   ..++++++++++||||||.+++   +++|.++|++|++++|+||+|....... ...++..... ..+..+
T Consensus       170 ~d---~---~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~-~~~~vi  242 (409)
T PRK07590        170 PE---L---PEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEG-ARECAI  242 (409)
T ss_pred             cc---C---cccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCC-cccceE
Confidence            00   1   1246889999999999999999   6888899999999999999999433221 1112222211 124578


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHH-----------HhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTI-----------RSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l-----------~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      +++||||.+|.+|   ||+++++++++.+           ........+ .+.+.+.+.++..+++.....++++.++.+
T Consensus       243 ~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~  321 (409)
T PRK07590        243 EFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKF-NGVSYIVQRAAEAVYSPEGKAQIKELIDYY  321 (409)
T ss_pred             EEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcc-cCcCHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            8999999998768   9999999988732           111111111 145677777777777532234667788899


Q ss_pred             HHHHHHHHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        389 QDIVAYLRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      +++++.+.+.|++.++.+..+ .+.+++++++...+..++++.+++++||.+.|+..+. ..+.+++|+++.  .+++++
T Consensus       322 ~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-~~~~~~iRi~~~--~~~~~l  398 (409)
T PRK07590        322 MENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFG-PSGEGYFRLSAF--GSRENV  398 (409)
T ss_pred             HHHHHHHHHHHHhcCCceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhC-CCCCCEEEEEcc--CCHHHH
Confidence            999999999999988776655 4558889988655677888888767899999998653 334679999964  478999


Q ss_pred             HHHHHHHHHH
Q psy16848        468 DKFVTDLLAV  477 (514)
Q Consensus       468 d~~~~~l~~~  477 (514)
                      ++++++|.++
T Consensus       399 ~~~l~rl~~~  408 (409)
T PRK07590        399 LEAMERIKKA  408 (409)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.95  E-value=5.8e-26  Score=233.79  Aligned_cols=338  Identities=11%  Similarity=0.083  Sum_probs=228.9

Q ss_pred             CCceeeecccCCC------CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-------CCcEEEEe
Q psy16848         16 SNRVTCRLSSVQY------KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-------KEAGLVFT   82 (514)
Q Consensus        16 ~g~~~~d~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~~~i~~~   82 (514)
                      .|+.++++..+..      ...+.+.+++.+.+....  ..++....|.    .++++.++++++       .+..++++
T Consensus        29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~----~~lr~aia~~~~~~~~~~~~~~i~~t~  102 (401)
T TIGR01264        29 PEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGK--YNGYAPTVGA----LSAREAIASYYHNPDGPIEADDVVLCS  102 (401)
T ss_pred             cCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccC--CCCCCCCCCC----HHHHHHHHHHHhhcCCCCCHHHEEECc
Confidence            4567788865443      346788888888776421  1111122233    445555555554       23455555


Q ss_pred             ccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         83 SCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        83 sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      ++++++..++.++..  +||.|+++.++|......++..|.+++.++....                             
T Consensus       103 G~~~al~~~~~~l~~--~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~-----------------------------  151 (401)
T TIGR01264       103 GCSHAIEMCIAALAN--AGQNILVPRPGFPLYETLAESMGIEVKLYNLLPD-----------------------------  151 (401)
T ss_pred             ChHHHHHHHHHHhCC--CCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCc-----------------------------
Confidence            667788888888866  9999999999998877777766766554432100                             


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                     ++.                                             .
T Consensus       152 -------------------------------~~~---------------------------------------------~  155 (401)
T TIGR01264       152 -------------------------------KSW---------------------------------------------E  155 (401)
T ss_pred             -------------------------------cCC---------------------------------------------C
Confidence                                           000                                             0


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCcc
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLH  318 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~  318 (514)
                      -|.+.+++.+    .++++++++++|+||||.+++   +++|.++|+++|+++|+||+|..... +....++.....  .
T Consensus       156 ~d~~~l~~~~----~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~  229 (401)
T TIGR01264       156 IDLKQLESLI----DEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS--T  229 (401)
T ss_pred             CCHHHHHHHh----ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC--C
Confidence            1334444433    335789999999999999998   78999999999999999999994433 222212222221  1


Q ss_pred             CceEEEcCCcccccCCC---eEEEecH------HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTK------NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      ...++++||||.++.+|   ||+++++      ++++.+......   ..+.+.+.+.++...++...+.++++.++.++
T Consensus       230 ~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~  306 (401)
T TIGR01264       230 VPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQR---ILGPCTIVQGALPSILLRTPQEYFDGTLSVLE  306 (401)
T ss_pred             CcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhc---cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            24789999999988878   9999863      344444443221   12456777888777776432456778889999


Q ss_pred             HHHHHHHHHHHhC-CCccccC-CCcEEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        390 DIVAYLRNELIQI-GFPVEHT-PSHIIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       390 ~~~~~l~~~L~~~-g~~~~~~-~~~~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      ++++.+.+.|+++ ++.+..+ .+.++++.++.     ..+..++++.+++++||.+.|+..+.   ..+++|++++  .
T Consensus       307 ~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~---~~~~iRis~~--~  381 (401)
T TIGR01264       307 SNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFE---YPGFFRVVLT--V  381 (401)
T ss_pred             HHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcC---CCCeEEEEEc--C
Confidence            9999999999988 7665444 45577777642     22467788888667899999988643   2579999998  3


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy16848        463 TREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~  480 (514)
                      .++++++++++|.+++++
T Consensus       382 ~~~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       382 PVVMMEEACSRIQEFCER  399 (401)
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            688999999999998865

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.95  E-value=2.9e-26  Score=232.49  Aligned_cols=296  Identities=20%  Similarity=0.216  Sum_probs=215.5

Q ss_pred             chHHHHHHHHHHhHcCCC--c-EEEEeccccccccchhhccccCCCceEEecCccchhh--hhhhhcCCCCeeeccCCCh
Q psy16848         59 SLFHEKLEEDVAKLHQKE--A-GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASM--IQGIRNSSAPKIIYRHNDV  133 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~--~-~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~--~~~~~~~~~~~~~~~~~d~  133 (514)
                      .+..+++++.+++++|.+  + .+++.|||+++..++.++..  +||.|+++.+.|.+.  ...++..|++++.++.+..
T Consensus        31 ~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  108 (356)
T cd06451          31 LALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE--PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWG  108 (356)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCC--CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCC
Confidence            466889999999999973  3 45667779999888888865  999999988877663  3334444544443321000


Q ss_pred             HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848        134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  213 (514)
Q Consensus       134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~  213 (514)
                                                                                                      
T Consensus       109 --------------------------------------------------------------------------------  108 (356)
T cd06451         109 --------------------------------------------------------------------------------  108 (356)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEE
Q psy16848        214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF  293 (514)
Q Consensus       214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li  293 (514)
                                                 ...|.+.+++.+++   .+++++++++++||+|.+.|+++|.++|+++|++++
T Consensus       109 ---------------------------~~~~~~~l~~~i~~---~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li  158 (356)
T cd06451         109 ---------------------------EAVSPEEIAEALEQ---HDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLI  158 (356)
T ss_pred             ---------------------------CCCCHHHHHHHHhc---cCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEE
Confidence                                       01144555555532   257899999999999999999999999999999999


Q ss_pred             EeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecHHHHHHHHh--hcCce--------------
Q psy16848        294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTKNFIDTIRS--YAAGF--------------  355 (514)
Q Consensus       294 ~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~~~~~~l~~--~~~~~--------------  355 (514)
                      +|++|++|...     + +..  ..+.|++++|+||+++. .| |+++.++++++.+..  ....+              
T Consensus       159 ~D~~~~~g~~~-----~-~~~--~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
T cd06451         159 VDAVSSLGGEP-----F-RMD--EWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEG  230 (356)
T ss_pred             EeeehhccCcc-----c-ccc--ccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhccc
Confidence            99999866431     1 111  23678999999999975 35 999999998887763  11111              


Q ss_pred             -EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC---Cc-EEEEEeCCCccHHHHHHH
Q psy16848        356 -IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP---SH-IIPIKIGNPALNTKICDM  430 (514)
Q Consensus       356 -~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~-~~~i~l~~~~~~~~~~~~  430 (514)
                       ..+.+.+...+.++.++++.+...+++++.++.+++.+++.+.|++.|+.+..+.   .+ ++++.++...+..++++.
T Consensus       231 ~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (356)
T cd06451         231 YSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVDGDEVVRR  310 (356)
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCCHHHHHHH
Confidence             1122345566677788888876667788899999999999999998887665321   23 345666655567889999


Q ss_pred             HHHhC-CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        431 LLKEK-GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       431 Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      |. ++ ||.++++..+.   ..+++|++++..+|++|+++++++|++++
T Consensus       311 L~-~~~gI~~~~g~~~~---~~~~iRis~~~~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         311 LM-KRYNIEIAGGLGPT---AGKVFRIGHMGEATREDVLGVLSALEEAL  355 (356)
T ss_pred             HH-HhCCEEEecccccc---cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            95 77 99999876432   24599999999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=1.5e-26  Score=234.37  Aligned_cols=319  Identities=13%  Similarity=0.103  Sum_probs=226.5

Q ss_pred             Cceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecc-ccccccch
Q psy16848         17 NRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSC-YVANDSTL   92 (514)
Q Consensus        17 g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sG-t~a~~~~l   92 (514)
                      +...+|++.  +.+..+|.+.+++.+.+....      .+  . .....++++.++++++.+ ..+++++| ++++..++
T Consensus        28 ~~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~------~Y--p-~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~   98 (366)
T PRK01533         28 DHSFVKLASNENPFGCSPRVLDELQKSWLDHA------LY--P-DGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIIS   98 (366)
T ss_pred             CCceEEeCCCCCCCCCCHHHHHHHHHHHHhcC------cC--C-CCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHH
Confidence            345678854  344457889998888765421      11  1 122467888888888754 34555555 55677777


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++..  +||.|+++.++|......++..|.+++.++.++.                                       
T Consensus        99 ~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~---------------------------------------  137 (366)
T PRK01533         99 RAVLK--AGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNG---------------------------------------  137 (366)
T ss_pred             HHhcC--CCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCCC---------------------------------------
Confidence            77766  9999999999998888777766666654432100                                       


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                           .-|.+.+++.+
T Consensus       138 ---------------------------------------------------------------------~~d~~~l~~~~  148 (366)
T PRK01533        138 ---------------------------------------------------------------------VYDLDEISSVV  148 (366)
T ss_pred             ---------------------------------------------------------------------CcCHHHHHHHh
Confidence                                                                                 01334444433


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHH---HHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEV---SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l---~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                          +++++++++++||||||.+++.+++.++   |++++ ++|+||+|..........+...... ..+..+++.||||
T Consensus       149 ----~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~-~~~~vi~~~SfSK  222 (366)
T PRK01533        149 ----DNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLE-KHKNILVLRTFSK  222 (366)
T ss_pred             ----CcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhc-cCCCEEEEeCchH
Confidence                3457899999999999999996555554   44555 6778999983322211111111111 2357899999999


Q ss_pred             cccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848        330 AFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV  406 (514)
Q Consensus       330 ~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  406 (514)
                      .+|.+|   ||+++++++++.+......    .+.+.+.+.++.++|+  ..+..++.++..+++++++.+.++.+|+++
T Consensus       223 ~~~l~GlRiG~~i~~~~~~~~l~~~~~~----~~~~~~~q~aa~~~l~--~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~  296 (366)
T PRK01533        223 AYGLASFRVGYAVGHEELIEKLNVVRLP----FNVSSLAQKAATIAFG--DDEFIEEIVRVNTEGLRQYESFCKENEIPF  296 (366)
T ss_pred             HhcChHHHHhHHhCCHHHHHHHHHhcCC----CCcCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            999778   9999999999998776533    3678888988888886  234556677788888888889998889888


Q ss_pred             ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       407 ~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ..+.++|+++.+++   ..++.+.|+ ++||.|++.        .+++|++++   +.+++++++++|+++++..
T Consensus       297 ~~~~~nf~~~~~~~---~~~~~~~l~-~~GI~Vr~~--------~~~iRis~~---~~~~~~~l~~al~~~~~~~  356 (366)
T PRK01533        297 YQSQTNFIFLPVEN---GGEIYEACA-HAGFIIRPF--------PNGVRITVG---TREQNEGVISVLQQHFENK  356 (366)
T ss_pred             CCCcCcEEEEeCCC---HHHHHHHHH-HCCcEEccC--------CCceEEeCC---CHHHHHHHHHHHHHHHHhc
Confidence            88888899988753   568888896 999999862        358999999   8999999999999987654

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.95  E-value=3.5e-26  Score=235.33  Aligned_cols=337  Identities=18%  Similarity=0.199  Sum_probs=226.3

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCc-CcccCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccchhhc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGT-RNISGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l~~l   95 (514)
                      .+.|.++... .++.+.+++.+.+..+....++. ....+..+..+++++.+++++|.+.  .++++++|+++..++.++
T Consensus        19 ~yl~~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~   97 (397)
T TIGR01976        19 VFFDNPAGTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI   97 (397)
T ss_pred             EEecCCccCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHH
Confidence            4555544332 36789999999988754332222 1122334678899999999998653  454555666655555444


Q ss_pred             cc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         96 GK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        96 ~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      .. .+|||+|++.++.|.++...+.                                                       
T Consensus        98 ~~~~~~gd~vl~~~~~~~s~~~~~~-------------------------------------------------------  122 (397)
T TIGR01976        98 SRRWGPGDEVIVTRLDHEANISPWL-------------------------------------------------------  122 (397)
T ss_pred             HhcCCCCCEEEEcCCchHhHHHHHH-------------------------------------------------------
Confidence            21 3499999999999988753220                                                       


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC--ChhHHHHHH
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN--DVNHLTQVL  252 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~--d~~~l~~~l  252 (514)
                                                                           ..+...|++++.++.+  +.....+.+
T Consensus       123 -----------------------------------------------------~~~~~~g~~~~~~~~~~~~~~~~~~~l  149 (397)
T TIGR01976       123 -----------------------------------------------------QAAERAGAKVKWARVDEATGELHPDDL  149 (397)
T ss_pred             -----------------------------------------------------HHHHhcCCEEEEEeccccCCCcCHHHH
Confidence                                                                 1111223333333311  111222333


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      ++..+++++++++++++||+|...|+++|.++|+++|+++++|+++..+..      ..+..  ..++|++++|+||++|
T Consensus       150 ~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~------~~~~~--~~~~d~~~~s~~K~~g  221 (397)
T TIGR01976       150 ASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHG------LIDVQ--ATGADFLTCSAYKFFG  221 (397)
T ss_pred             HHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhcccc------CCCHH--HcCCCEEEEechhhcC
Confidence            333345689999999999999999999999999999999999999975431      11111  3478999999999998


Q ss_pred             CCCeEEEecHHHHHHHHhhcCceEec--------cCCcHHHHHHHHHHHHHhhhch--------------HHHHHHHHHH
Q psy16848        333 NIGGYIVGTKNFIDTIRSYAAGFIFT--------TSLPPTVLAGAREAIRILSSQE--------------GVELRAKHQD  390 (514)
Q Consensus       333 ~~GG~l~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~a~~~~l~~~~~~~--------------~~~~~~~~~~  390 (514)
                      +..|++++++++++.+.+....+.+.        .+.+....+++.++++.+.+.+              +++++++..+
T Consensus       222 ~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
T TIGR01976       222 PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENR  301 (397)
T ss_pred             CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHH
Confidence            75599999999888776543322111        1334455666667777664332              5667788888


Q ss_pred             HHHHHHHHHHhC-CCccccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC--------CCCCCcEEEE
Q psy16848        391 IVAYLRNELIQI-GFPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT--------VPVGEEKIRL  456 (514)
Q Consensus       391 ~~~~l~~~L~~~-g~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~--------~~~~~~~iRl  456 (514)
                      +.+++.+.|+++ ++.+..+     .++++.+.++. .+..++.++| +++||.++.+..|.        .+...+++|+
T Consensus       302 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRi  379 (397)
T TIGR01976       302 LAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHG-LPPQRVVRRL-ADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRV  379 (397)
T ss_pred             HHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCC-cCHHHHHHHH-HHCCeEEEeCccchHHHHHHhCCCCCCCeEEE
Confidence            999999999887 4766543     45677777653 3467899999 48999999775432        2223568999


Q ss_pred             EeCCCCCHHHHHHHHHHH
Q psy16848        457 APTPFHTREMIDKFVTDL  474 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l  474 (514)
                      +++.++|++|+++++++|
T Consensus       380 s~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       380 GLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             EeeccCCHHHHHHHHHhC
Confidence            999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK06541 hypothetical protein; Provisional

Probab=99.95  E-value=6.8e-26  Score=234.89  Aligned_cols=370  Identities=16%  Similarity=0.095  Sum_probs=234.6

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.|+||.+.   ..+|  ||++.+++.+++++...... .   ....+...++.+++++.+.  .++++|++||++|+
T Consensus        50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~-~---~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAv  125 (460)
T PRK06541         50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPL-W---SYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAV  125 (460)
T ss_pred             CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccc-c---ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHH
Confidence            56667776432   2233  79999999999998543221 1   1124677889999999864  45788899999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++.....            +                           . .....++.+++.+++.||..  +.+.. 
T Consensus       126 e~AlklAr~~------------~---------------------------~-~~g~~~r~~ii~~~~~yHG~t~~a~s~-  164 (460)
T PRK06541        126 ESAWKLAKQY------------F---------------------------K-LTGKPGKHKVISRAIAYHGTTQGALAI-  164 (460)
T ss_pred             HHHHHHHHHH------------H---------------------------H-hcCCCCccEEEEEcCcccCcchhhhcC-
Confidence            9999644310            0                           0 00112356778888888621  21110 


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                 .+..         ........+.....-+|.++.......+-..........+
T Consensus       165 ---------------------------~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (460)
T PRK06541        165 ---------------------------TGLP---------AFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAAD  208 (460)
T ss_pred             ---------------------------cCCh---------hhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHH
Confidence                                       0000         0000000000000000000000000000000000000124


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCce
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      .+++.+++...+++++|+++++++++|.+.+    +++|+++|++||+++|+||+++ +|..|..+  ..+.+++  .+|
T Consensus       209 ~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~--a~~~~gv--~PD  284 (460)
T PRK06541        209 RIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF--GCERFGY--VPD  284 (460)
T ss_pred             HHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhh--hhhhcCC--CCC
Confidence            5666665433456899999999999999988    9999999999999999999996 77665432  1233444  789


Q ss_pred             EEEcCCcccccC---CCeEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       322 i~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      ++  +++|++++   +-|++++++++.+.+......  ...+++.+++.++++.++++.+.++.   ..++++++.+++.
T Consensus       285 iv--t~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~---~~~~~~~~g~~l~  359 (460)
T PRK06541        285 II--TCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREG---LLDHVRDNEPAFR  359 (460)
T ss_pred             EE--EecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Confidence            98  79999985   127888898888877543222  22356789999999999999886554   6788999999999


Q ss_pred             HHHHhC-CCcc---ccCCCcEEEEEeCCCc---------c-----HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        397 NELIQI-GFPV---EHTPSHIIPIKIGNPA---------L-----NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       397 ~~L~~~-g~~~---~~~~~~~~~i~l~~~~---------~-----~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      +.|+++ ..++   +...|.++.+++.+..         .     ...+...|+ ++||.+.+.     +.+.+.+|+++
T Consensus       360 ~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----~~g~~~lrl~P  433 (460)
T PRK06541        360 ATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALF-EAGLYCRAD-----DRGDPVVQLAP  433 (460)
T ss_pred             HHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH-hCCeEEEec-----CCCCCEEEEEC
Confidence            999886 3333   3456778888773210         0     124667786 899999752     22346899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +..+|++|+++++++++++++++
T Consensus       434 pl~~t~~~id~~~~~l~~~l~~~  456 (460)
T PRK06541        434 PLISGQEEFDEIEQILRSVLTEA  456 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.95  E-value=5e-26  Score=234.10  Aligned_cols=336  Identities=21%  Similarity=0.248  Sum_probs=231.5

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++|+.+   +.+++  ||++.+++.+++++.....  .   ....+...+++++++++.+.+++++++||++|+.
T Consensus        36 ~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~---~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~  110 (396)
T PRK02627         36 DDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTS--N---LYYIEPQEELAEKLVELSGMDKVFFCNSGAEANE  110 (396)
T ss_pred             CCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccc--c---ccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHH
Confidence            37788888865   44555  5999999999998743211  1   1235788999999999999999999999999999


Q ss_pred             cchhhccccC-C----CceEE-ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         90 STLFTLGKMI-P----GLHYI-SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        90 ~~l~~l~~~~-~----gd~v~-~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      .+++.+...+ +    .+.|+ .+..+|.....++...+.......                           |      
T Consensus       111 ~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~---------------------------~------  157 (396)
T PRK02627        111 AAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEG---------------------------F------  157 (396)
T ss_pred             HHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCcccccc---------------------------C------
Confidence            9998664311 1    14454 445555444443333222110000                           0      


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                                                         ......+..++.+
T Consensus       158 -------------------------------------------------------------------~~~~~~~~~~~~~  170 (396)
T PRK02627        158 -------------------------------------------------------------------EPLVEGFIYVPFN  170 (396)
T ss_pred             -------------------------------------------------------------------CCCCCCceEeCCC
Confidence                                                                               0000113345566


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCcc-ccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGA-ICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~-~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                      |.+.+++.+    ++++++|++++++||+|. .++   +++|.++|++||+++|+||+|+ ++..|...  .....+.  
T Consensus       171 d~~~l~~~i----~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~--~~~~~~~--  242 (396)
T PRK02627        171 DIEALKAAI----TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLF--AYQHYGI--  242 (396)
T ss_pred             CHHHHHHhc----CCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCcee--eehhcCC--
Confidence            777777766    356899999999999994 555   8999999999999999999999 54443211  1122332  


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .+|++  ||||.+++ |   |++++++++++.+.......  +.+.+++.++++.++++.+..+.   ..++++++.+++
T Consensus       243 ~pdi~--t~sK~~~~-G~rig~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~~  314 (396)
T PRK02627        243 EPDIM--TLAKGLGG-GVPIGAVLAKEKVADVFTPGDHGS--TFGGNPLACAAALAVIEIIEEEG---LLENAAEVGEYL  314 (396)
T ss_pred             CCCEE--EEcchhhC-CcccEEEEEcHHHHhccCCCCCCC--CCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHH
Confidence            56777  89999995 6   99999999888776543333  44678999999999998775433   556666666666


Q ss_pred             HHHHHhC--CC---ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        396 RNELIQI--GF---PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       396 ~~~L~~~--g~---~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      .+.|.+.  .+   ....+.+.++++.++  .+..++++.|+ ++||.+.++.       .+++|++++..+++++++++
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~-------~~~lRi~~~~~~~~~~i~~~  384 (396)
T PRK02627        315 RAKLRELLEKYPGIKEVRGLGLMIGIELD--RPAAEIVKKAL-EKGLLINVTG-------DNVLRLLPPLIISKEEIDEA  384 (396)
T ss_pred             HHHHHHHHHhCCCeeeeccCcEEEEEEec--CcHHHHHHHHH-HCCeEEeecC-------CCEEEEECCcccCHHHHHHH
Confidence            6666554  12   122345667788773  24678999996 7899998642       35799999888999999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      +++|+++++++
T Consensus       385 ~~~l~~~l~~~  395 (396)
T PRK02627        385 VDRLEEVLKEL  395 (396)
T ss_pred             HHHHHHHHHhh
Confidence            99999988653

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.95  E-value=4.4e-26  Score=233.13  Aligned_cols=333  Identities=21%  Similarity=0.228  Sum_probs=231.7

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++||.+   ++|++  +|.+.+++.+++.++...  ...   ...+...++++++++++|.+++++++||++|+.
T Consensus        24 ~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~---~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~   98 (379)
T TIGR00707        24 VNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV--SNL---YYTEPQEELAEKLVEHSGADRVFFCNSGAEANE   98 (379)
T ss_pred             CCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccc--ccc---cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHH
Confidence            47889999987   67887  589999999999986432  111   135778999999999999999999999999999


Q ss_pred             cchhhccc-cC----CCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         90 STLFTLGK-MI----PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        90 ~~l~~l~~-~~----~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      .++..+.. ..    ++|.|++.++.|+.........+.......                                   
T Consensus        99 ~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~-----------------------------------  143 (379)
T TIGR00707        99 AALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK-----------------------------------  143 (379)
T ss_pred             HHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc-----------------------------------
Confidence            98876532 11    268877766655433222221111110000                                   


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                                                      ...........++.+|
T Consensus       144 ----------------------------------------------------------------~~~~~~~~~~~~~~~d  159 (379)
T TIGR00707       144 ----------------------------------------------------------------GFEPLVPGFSYAPYND  159 (379)
T ss_pred             ----------------------------------------------------------------cCCCCCCCceeeCCCC
Confidence                                                                            0000011233445557


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccc-cC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAI-CP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHN  319 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~-~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~  319 (514)
                      .+.+++.+.    ++++++++++++|++|.. ++   +++|.++|+++|+++|+||+|+ ++..+. +.. ....+.  .
T Consensus       160 ~~~l~~~~~----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~-~~~~~~--~  231 (379)
T TIGR00707       160 IESLKKAID----DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFA-YEHYGI--E  231 (379)
T ss_pred             HHHHHHHhh----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhh-HHhcCC--C
Confidence            777776664    357899999888888875 34   8999999999999999999998 433322 101 112222  4


Q ss_pred             ceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      +|++  +|||.+++ |   |++++++++++.+.......  ..+.+++.++++.++|+.+...   +.++++++++++++
T Consensus       232 ~d~~--t~sK~~~~-G~riG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~aaL~~~~~~---~~~~~~~~~~~~~~  303 (379)
T TIGR00707       232 PDII--TLAKGLGG-GVPIGATLAKEEVAEAFTPGDHGS--TFGGNPLACAAALAVLEVIEKE---RLLENVKEKGDYFK  303 (379)
T ss_pred             CCEE--EEcccccC-CcccEEEEEcHHHHhhhcCCCCCC--CCCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH
Confidence            5766  79999984 5   99999999998887644333  3357889999999999876432   46777888888888


Q ss_pred             HHHHhCC----CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q psy16848        397 NELIQIG----FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVT  472 (514)
Q Consensus       397 ~~L~~~g----~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~  472 (514)
                      +.|++.+    +....+.+.++++.+++.  ..++.+.|. ++||.+.+.       +.+++|++++..+++++++++++
T Consensus       304 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~l~-~~Gv~v~~~-------~~~~lRi~~~~~~t~~~i~~~~~  373 (379)
T TIGR00707       304 ERLEELGKNYPNKEVRGKGLMLGIELEAP--CKDIVKKAL-EKGLLVNCA-------GPKVLRFLPPLIITKEEIDEAVS  373 (379)
T ss_pred             HHHHHHHhhCCCCccccCceEEEEEecCc--HHHHHHHHH-HCCcEEeeC-------CCCEEEEECCCcCCHHHHHHHHH
Confidence            8877652    222234566778877643  578888885 999999863       23689999988899999999999


Q ss_pred             HHHHH
Q psy16848        473 DLLAV  477 (514)
Q Consensus       473 ~l~~~  477 (514)
                      +|+++
T Consensus       374 ~l~~~  378 (379)
T TIGR00707       374 ALEEA  378 (379)
T ss_pred             HHHHh
Confidence            99875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.95  E-value=4.6e-26  Score=233.02  Aligned_cols=344  Identities=21%  Similarity=0.183  Sum_probs=233.6

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~i~~~sGt~a~~   89 (514)
                      +|++|+||.+.   ..+|  ||++.+++.+++++.... + . .+  ..+...++.+++.+... .++++|++||++|++
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~-~-~~--~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e  112 (408)
T PRK04612         38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHT-S-N-VF--YSAPPLKLAEELVTASRFAEKVFLCNSGTEANE  112 (408)
T ss_pred             CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccc-c-c-cc--CCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHH
Confidence            66777777432   2223  899999999999974322 1 1 11  23567788888888763 467888999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHH-hc-ccCCCcEEEeeccccccCCccchh
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE-NM-DVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .|++.....                                         -. +. ..++++++.++++||....     
T Consensus       113 ~AlklAr~~-----------------------------------------~~~~g~~~~r~~ii~~~~~yHG~t~-----  146 (408)
T PRK04612        113 AAIKLVRKW-----------------------------------------ASSQGRPADKRVIVTFRGSFHGRTL-----  146 (408)
T ss_pred             HHHHHHHHH-----------------------------------------HHhhCCCCCCcEEEEECCCcCCccH-----
Confidence            999654320                                         00 00 1235567888888862100     


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                           |.....+                     .+      .+...+......+..++.+|.+.
T Consensus       147 ---------------------~~~s~~~---------------------~~------~~~~~~~~~~~~~~~~~~~d~~~  178 (408)
T PRK04612        147 ---------------------AAVTATA---------------------QP------KYQEGYEPLPGGFRYVDFNDVEA  178 (408)
T ss_pred             ---------------------HHHHhcC---------------------Cc------ccccCCCCCCCCceEcCCCCHHH
Confidence                                 0000000                     00      00000000011245567778888


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      +++.++   ..+++++++++.+...|...+    +++|+++|++||+++|+||+|+ +|..|.   .+. .......+|+
T Consensus       179 l~~~~~---~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~a-~~~~~~~pdi  251 (408)
T PRK04612        179 LEAAMA---GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT---LFA-HWQEQVTPDI  251 (408)
T ss_pred             HHHhhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---hhh-hhhcCCCCCE
Confidence            888774   245788899988776666654    8999999999999999999998 444332   121 1111236788


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      .  ||+|++++ |   |++++++++.+.+.......  +.+.+++.++++.++|+.+.++.   +.++++++.+++.+.|
T Consensus       252 ~--t~~K~l~~-G~piga~~~~~~~~~~~~~~~~~~--t~~~~p~~~aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~l  323 (408)
T PRK04612        252 V--TLAKALGG-GFPIGAMLAGPKVAETMQFGAHGT--TFGGNPLAAAVARVALRKLASPQ---IAANVARQSAALRAGL  323 (408)
T ss_pred             E--EEcchhcC-CCceEEEEECHHHHhhhcCCCcCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence            7  99999986 5   88888888888776544333  44688999999999999886544   7888899999999888


Q ss_pred             HhC--CCcc---ccCCCcEEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q psy16848        400 IQI--GFPV---EHTPSHIIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVT  472 (514)
Q Consensus       400 ~~~--g~~~---~~~~~~~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~  472 (514)
                      +++  .+++   +...|.++.+.+..  .....++++.++ ++|+.+.+       .+.+.+|+.++..++++|++++++
T Consensus       324 ~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~-~~Gvlv~~-------~g~~~lRl~Ppl~it~eeid~~l~  395 (408)
T PRK04612        324 EALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAA-EHGLLLLQ-------AGPDVLRFVPALNLTDAELADGLA  395 (408)
T ss_pred             HHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHH-HCCeEEee-------CCCCEEEEcCCccCCHHHHHHHHH
Confidence            876  2332   34567788888753  233567888885 99999863       234789999999999999999999


Q ss_pred             HHHHHHHHc
Q psy16848        473 DLLAVWKSL  481 (514)
Q Consensus       473 ~l~~~l~~~  481 (514)
                      ++++++.++
T Consensus       396 ~l~~~l~~~  404 (408)
T PRK04612        396 RLRLALADY  404 (408)
T ss_pred             HHHHHHHHH
Confidence            999998765

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.95  E-value=3.5e-26  Score=235.94  Aligned_cols=221  Identities=22%  Similarity=0.286  Sum_probs=161.5

Q ss_pred             CChhHHHHHHhhcc--CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848        243 NDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG  315 (514)
Q Consensus       243 ~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~  315 (514)
                      +|++.+++.+++..  .+++++|+++++++..|...+    +++|+++|++||+++|+||+++ +|..|...  ..+..+
T Consensus       180 ~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~--~~~~~~  257 (425)
T PRK09264        180 DTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF--SFERAG  257 (425)
T ss_pred             hHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH--HHhhcC
Confidence            46777888886542  246899999999999897654    8999999999999999999998 54443211  112333


Q ss_pred             CccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH-HHhhhchHHHHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI-RILSSQEGVELRAKHQDI  391 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~  391 (514)
                      +  .+|++  +++|.+++.|   |++++++++ ..+.......  +.+.+++.++++.+++ +.+.++   ++.++++++
T Consensus       258 v--~PDi~--t~~K~l~~~G~pigav~~~~~i-~~~~~~~~~~--T~~gnp~~~aaa~a~l~~~~~~~---~l~~~~~~~  327 (425)
T PRK09264        258 I--TPDIV--TLSKSISGYGLPMALVLIKPEL-DVWKPGEHNG--TFRGNNLAFVTATAALEEYWSDD---AFEKEVKAK  327 (425)
T ss_pred             C--CCCEE--EeccccCCCccceEEEEEchhh-hccCCCccCC--CCCCCHHHHHHHHHHHHHHHhhh---HHHHHHHHH
Confidence            3  78988  8899998755   888888776 3333222222  4467888888888998 444332   367778888


Q ss_pred             HHHHHHHHHhC--CCcc----ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHH
Q psy16848        392 VAYLRNELIQI--GFPV----EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE  465 (514)
Q Consensus       392 ~~~l~~~L~~~--g~~~----~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e  465 (514)
                      .+++.+.|+++  ..+.    +...+.++++.+++......+.+.++ ++||.+.+...     ....+|++++..+|++
T Consensus       328 g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~-~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~  401 (425)
T PRK09264        328 GELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAF-ENGLIIETSGP-----EDEVVKLLPPLTIDEE  401 (425)
T ss_pred             HHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHH-HCCCEEeccCC-----CCCEEEEeCCCCCCHH
Confidence            88888877664  2321    23356688888876555678888886 89999975321     2468999999999999


Q ss_pred             HHHHHHHHHHHHHHHc
Q psy16848        466 MIDKFVTDLLAVWKSL  481 (514)
Q Consensus       466 ~id~~~~~l~~~l~~~  481 (514)
                      ++++++++|+++++++
T Consensus       402 ei~~~~~~l~~~l~~~  417 (425)
T PRK09264        402 ELEEGLDILEEAVAEV  417 (425)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998775

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.95  E-value=1.9e-26  Score=229.67  Aligned_cols=359  Identities=19%  Similarity=0.203  Sum_probs=244.0

Q ss_pred             CCceeeecccCCCC-------------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEE
Q psy16848         16 SNRVTCRLSSVQYK-------------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGL   79 (514)
Q Consensus        16 ~g~~~~d~~~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i   79 (514)
                      +|.+++|..++.|+             +||++.+++.+|+++..+....    ..+.+...+|.++|+++..   .++++
T Consensus        34 eG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~----~~t~~Pa~~LA~~L~~~aP~~~l~~vF  109 (449)
T COG0161          34 EGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFG----GFTHEPAIELAEKLAELAPEGGLDHVF  109 (449)
T ss_pred             ceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhc----ccCCchHHHHHHHHHHhCCCCCccEEE
Confidence            55555555555555             3799999999999986654221    1223448999999999986   67889


Q ss_pred             EEeccccccccchhhccc----cC-C--CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEE
Q psy16848         80 VFTSCYVANDSTLFTLGK----MI-P--GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA  152 (514)
Q Consensus        80 ~~~sGt~a~~~~l~~l~~----~~-~--gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~  152 (514)
                      |++||++|++.+++....    .+ |  ...|-....+|..++.+++.+|..-                           
T Consensus       110 f~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~---------------------------  162 (449)
T COG0161         110 FTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVA---------------------------  162 (449)
T ss_pred             EeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchh---------------------------
Confidence            999999999999976543    00 1  1123333344444444433333210                           


Q ss_pred             eeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHH-HHHhhccCC--ceeeecchHHH
Q psy16848        153 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD-IISGTLVNP--EVAIHASMIQG  229 (514)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~-~~~~~l~~~--~v~~~~~~~~~  229 (514)
                                                                             .. .....++..  .++.|..|...
T Consensus       163 -------------------------------------------------------~~~~~~~~ll~~~~~~~~P~~y~~~  187 (449)
T COG0161         163 -------------------------------------------------------LRHAFYDPLLPEVLHLPAPYAYRRG  187 (449)
T ss_pred             -------------------------------------------------------hhhhhccccccCceecCCCcccccC
Confidence                                                                   00 000001000  11111111000


Q ss_pred             HhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC-CccccC----HHHHHHHHHHcCCEEEEecccc-cccc
Q psy16848        230 IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM-TGAICP----LKELCEVSHQHGALTFVDEVHA-VGLY  303 (514)
Q Consensus       230 ~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np-tG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~  303 (514)
                        ..+.....+ ....+.+++.+.+...++++++++|++..- +|..+|    +++++++|++||+++|.||+-+ +|++
T Consensus       188 --~~~~~~~~~-~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRT  264 (449)
T COG0161         188 --FFGEGDEEF-AEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRT  264 (449)
T ss_pred             --CCCCChHHH-HHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcC
Confidence              000000000 123577888888877788999999998877 888877    8999999999999999999999 7777


Q ss_pred             CCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhh-cCc--eEeccCCcHHHHHHHHHHHHHh
Q psy16848        304 GEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSY-AAG--FIFTTSLPPTVLAGAREAIRIL  376 (514)
Q Consensus       304 g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~a~~~~l~~~  376 (514)
                      |+..  ..+..++  .||++  +++|.+++ |    |.+++++++.+.+... ...  .+++++.+|+.|+++++.|+.+
T Consensus       265 G~~F--A~e~~gi--~PDi~--~~aKGLT~-GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~  337 (449)
T COG0161         265 GKMF--ACEHAGI--VPDIL--CLAKGLTG-GYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDIL  337 (449)
T ss_pred             chhh--hhhhcCC--CCCee--eecccccc-cchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHH
Confidence            6543  2345555  89999  99999976 4    7778888888888764 222  2346689999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHh-C-CCccc---cCCCcEEEEEeCCCcc---------HHHHHHHHHHhCCeEEecc
Q psy16848        377 SSQEGVELRAKHQDIVAYLRNELIQ-I-GFPVE---HTPSHIIPIKIGNPAL---------NTKICDMLLKEKGHYVQPI  442 (514)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~---~~~~~~~~i~l~~~~~---------~~~~~~~Ll~~~GI~v~~~  442 (514)
                      +++.   +.++.++...++.+.|++ + +.+.+   ...|.+..+++.....         ...+.+.++ ++|+.++|.
T Consensus       338 e~e~---l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~-e~Gl~iRp~  413 (449)
T COG0161         338 EEED---LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAAL-ERGLLIRPL  413 (449)
T ss_pred             HhcC---HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHH-HCCeEEeec
Confidence            8777   788888999999999987 3 33333   3456676777643322         456777775 999999964


Q ss_pred             cCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        443 NYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       443 ~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                              .+.+-++++...|++|++++++++++.+++..
T Consensus       414 --------g~~i~~~PPliit~~eid~l~~~l~~al~~~~  445 (449)
T COG0161         414 --------GDVIYLMPPLIITREEIDELVDALREALDETL  445 (449)
T ss_pred             --------CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence                    23788999999999999999999999998753

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.95  E-value=8.5e-26  Score=233.24  Aligned_cols=366  Identities=16%  Similarity=0.105  Sum_probs=231.8

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   ..++  ||++.+++.+++++......   . ....+...++.+++++++.  .++++|++||++|+
T Consensus        44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~---~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~  119 (442)
T PRK13360         44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA---F-QMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESV  119 (442)
T ss_pred             CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCccc---C-CcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            56666666432   2223  89999999999997543221   1 1124667889999999873  56789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++......                                       . .+...+|+++|.+++.||..  |.+.  
T Consensus       120 e~AlklAr~~~---------------------------------------~-~~g~~~r~~ii~~~~~yHG~t~gals--  157 (442)
T PRK13360        120 DTALKIALAYH---------------------------------------R-ARGEGSRTRLIGRERGYHGVGFGGIS--  157 (442)
T ss_pred             HHHHHHHHHHH---------------------------------------H-hcCCCCCcEEEEEcCCcCCccHhhhh--
Confidence            99996543200                                       0 00112356778888888621  1110  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchH-HHHhhCCCCEEEecCCCh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMI-QGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~-~~~~~~g~~~~~v~~~d~  245 (514)
                                                -.+..         ........+.....-+|..+. .... .+...........
T Consensus       158 --------------------------~tg~~---------~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~  201 (442)
T PRK13360        158 --------------------------VGGIV---------PNRKAFGALLPGVDHLPHTLDLARNA-FSKGQPEHGAELA  201 (442)
T ss_pred             --------------------------ccCCh---------hhhhccCCCCCCCEEeCCCchhhccc-cCCChHHHHHHHH
Confidence                                      00000         000000000000000111100 0000 0000000000123


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      +.+++.++....+++++|++++++...|...+    +++|+++|++||+++|+||+++ +|..|+.+  ..+..++  .+
T Consensus       202 ~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~--a~~~~gv--~P  277 (442)
T PRK13360        202 DELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF--AAQYFGV--TP  277 (442)
T ss_pred             HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch--hhhhcCC--CC
Confidence            56667776544467899999999999999988    9999999999999999999996 66665432  2344554  78


Q ss_pred             eEEEcCCcccccCC---CeEEEecHHHHHHHHhhcC-----ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAA-----GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       321 di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      |++  +++|++++.   -|.+++++++.+.+.....     ...++++.+++.++++.++|+.+.++.   +.++.+++.
T Consensus       278 Div--t~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~---l~~~~~~~g  352 (442)
T PRK13360        278 DLL--TCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREG---LLTRAARLA  352 (442)
T ss_pred             cee--eeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence            998  999999752   2667888888887653211     122355789999999999999886655   778888889


Q ss_pred             HHHHHHHHhC-CCccc---cCCCcEEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCC
Q psy16848        393 AYLRNELIQI-GFPVE---HTPSHIIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT  463 (514)
Q Consensus       393 ~~l~~~L~~~-g~~~~---~~~~~~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t  463 (514)
                      +++.+.|+++ ..+.+   ...|.+..+.+..     .....++.+.++ ++||++.+.        .+.+|++++..+|
T Consensus       353 ~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~--------~~~lr~~Ppl~~t  423 (442)
T PRK13360        353 PYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCF-EKGLMIRYT--------GDILALSPPLIIE  423 (442)
T ss_pred             HHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHH-HCCcEEEec--------CCEEEEeCCCccC
Confidence            9999888876 23222   2344455555532     123457778886 899998631        2479999999999


Q ss_pred             HHHHHHHHHHHHHHHHHc
Q psy16848        464 REMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~~  481 (514)
                      ++|+|+++++|+++++++
T Consensus       424 ~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        424 EAQIDELFDILAQALKET  441 (442)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998764

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=9e-26  Score=233.49  Aligned_cols=207  Identities=22%  Similarity=0.346  Sum_probs=158.9

Q ss_pred             CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      .+++++|+++++++..|...+    +++|+++|++||+++|+||+++ +|..|..+  ..+..++  .+|++  +++|++
T Consensus       205 ~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~--a~~~~gv--~pDi~--t~gK~l  278 (445)
T PRK08593        205 ADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS--SISHFNI--TPDLM--SFGKSL  278 (445)
T ss_pred             CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH--HHHhcCC--CCCEe--eecccc
Confidence            357899999999999999866    9999999999999999999997 65554321  1234444  78988  999999


Q ss_pred             cC--CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc-
Q psy16848        332 GN--IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV-  406 (514)
Q Consensus       332 g~--~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-  406 (514)
                      ++  +.|++++++++.+.+....  ..++++.++..++++.++|+.+.++.   +.++.+++.+++++.|+++  ..++ 
T Consensus       279 ~~G~p~gav~~~~~i~~~~~~~~--~~~T~~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v  353 (445)
T PRK08593        279 AGGMPMSAIVGRKEIMESLEAPA--HLFTTGANPVSCAAALATIDMIEDES---LLQRSAEKGEYARKRFDQWVSKYNFV  353 (445)
T ss_pred             cCCcccEEEEEcHHHHhhhccCC--CCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            75  2388999999988875332  33366889999999999999886554   7788888888888888765  2332 


Q ss_pred             --ccCCCcEEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        407 --EHTPSHIIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       407 --~~~~~~~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                        +...|.++.+.+..        ......+...++ ++||.+.+.       +.+.+|+.++..+|++|++++++++++
T Consensus       354 ~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~-------~~~~lr~~p~l~~t~~~id~~~~~l~~  425 (445)
T PRK08593        354 GDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCF-EHGVVIIAV-------AGNVLRFQPPLVITYEQLDTALNTIEQ  425 (445)
T ss_pred             EEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHH-HCCeEEecc-------CCCEEEEECCCccCHHHHHHHHHHHHH
Confidence              23456676666632        112456888886 899998642       235899999999999999999999999


Q ss_pred             HHHHcC
Q psy16848        477 VWKSLD  482 (514)
Q Consensus       477 ~l~~~~  482 (514)
                      +++++.
T Consensus       426 ~l~~~~  431 (445)
T PRK08593        426 AFTALE  431 (445)
T ss_pred             HHHHHh
Confidence            998764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.95  E-value=8.7e-26  Score=231.84  Aligned_cols=338  Identities=16%  Similarity=0.121  Sum_probs=228.5

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C--cEEEEecc-cc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E--AGLVFTSC-YV   86 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~--~~i~~~sG-t~   86 (514)
                      +|..++|+..+.  +..++.+.+++.+.+..    ...+....|..++.+++.+.+.+.+|.    +  ..+++++| ++
T Consensus        26 ~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~----~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~  101 (393)
T TIGR03538        26 ASKPPIALSIGEPKHPTPAFVLEALRENLHG----LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTRE  101 (393)
T ss_pred             cCCCeEEecCCCCCCCCCHHHHHHHHHHhhc----cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHH
Confidence            567788886433  33456788887776542    122223345566666666666665432    2  34666665 45


Q ss_pred             ccccchhhccccCCCce--EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         87 ANDSTLFTLGKMIPGLH--YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~--v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++..++.+++.  |||.  |+++.+.|......++..|.+++.++..+-                               
T Consensus       102 al~~~~~~l~~--~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-------------------------------  148 (393)
T TIGR03538       102 ALFAFAQAVIN--PGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAE-------------------------------  148 (393)
T ss_pred             HHHHHHHHHcC--CCCcceEEecCCCCcchHHHHHhcCCeEEEeecccc-------------------------------
Confidence            67777777766  8986  999999987776666666666554432100                               


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                   ++.                                             ..|
T Consensus       149 -----------------------------~~~---------------------------------------------~~d  154 (393)
T TIGR03538       149 -----------------------------NGF---------------------------------------------LPD  154 (393)
T ss_pred             -----------------------------CCC---------------------------------------------CCC
Confidence                                         000                                             013


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCcccc---CCC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGER---DGQ  316 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~---~~~  316 (514)
                      .+.+++.+.    ++++++++++||||||.+++   +++|.++|++|++++|+||+|.......  ...+....   .+.
T Consensus       155 ~~~l~~~~~----~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~  230 (393)
T TIGR03538       155 FDAVPESVW----RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGR  230 (393)
T ss_pred             HHHHHHHHh----hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccc
Confidence            344444443    35789999999999999999   7999999999999999999998443321  11111100   110


Q ss_pred             -ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        317 -LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       317 -~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                       ..+..+++.||||.++.+|   ||+++++++++.+.......  +.+.+.+.+.++.+.+.  ....+.+.++.+++++
T Consensus       231 ~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~--~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~  306 (393)
T TIGR03538       231 DDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYH--GCAMPIPTQLASIAAWN--DEQHVRENRALYREKF  306 (393)
T ss_pred             cccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhh--ccCcCHHHHHHHHHHhc--ChHHHHHHHHHHHHHH
Confidence             1246799999999988778   99999999998887655433  33567777777777664  2356777888899999


Q ss_pred             HHHHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-----CCCCcEEEEEeCCCCCHHH
Q psy16848        393 AYLRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-----PVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       393 ~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-----~~~~~~iRl~~~~~~t~e~  466 (514)
                      +.+.+.|++. +.+..+ .+.++++.++  .+..++++.+++++||.+.|+..+..     ..+.+++|++++.  ++++
T Consensus       307 ~~~~~~L~~~-~~~~~p~gg~f~~~~~~--~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~--~~~~  381 (393)
T TIGR03538       307 AAVLEILGQV-LDLELPDAGFYLWPKVP--GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA--PLEE  381 (393)
T ss_pred             HHHHHHHHhh-CcccCCCeeEEEEEECC--CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC--CHHH
Confidence            9999999875 444344 4457778887  23678888887678999999996532     2346799999983  6899


Q ss_pred             HHHHHHHHHHH
Q psy16848        467 IDKFVTDLLAV  477 (514)
Q Consensus       467 id~~~~~l~~~  477 (514)
                      +++++++|+++
T Consensus       382 l~~~l~~l~~~  392 (393)
T TIGR03538       382 CVEAAERIRSF  392 (393)
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.95  E-value=1.6e-25  Score=227.52  Aligned_cols=322  Identities=20%  Similarity=0.165  Sum_probs=224.5

Q ss_pred             CCceeeecccCCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccc-c
Q psy16848         16 SNRVTCRLSSVQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVA-N   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a-~   88 (514)
                      .+..++|+..++...  +|.+.+++.+.....     ++....|..++.+.+++++.+..|.    +..+++++|++. +
T Consensus        25 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~-----~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i   99 (364)
T PRK07865         25 HPDGIVDLSVGTPVDPVPPVIQEALAAAADAP-----GYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV   99 (364)
T ss_pred             cCCCEEEcCCCCCCCCCCHHHHHHHHHHHhhC-----CCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence            445689997665332  466777776654321     2223345567777777777766553    245777777665 4


Q ss_pred             ccchhhc-cccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTL-GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l-~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++..+ ++  +||.|+++.++|.....+++..|++++.++.  .+                                 
T Consensus       100 ~~~~~~l~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~---------------------------------  142 (364)
T PRK07865        100 AWLPTLLGLG--PGDVVVIPELAYPTYEVGARLAGATVVRADS--LT---------------------------------  142 (364)
T ss_pred             HHHHHHHcCC--CCCEEEECCCCcccHHHHHHhcCCEEEecCC--hh---------------------------------
Confidence            4444444 34  9999999999999888777777776654421  00                                 


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (364)
T PRK07865        143 --------------------------------------------------------------------------------  142 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccC--CCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD--GQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~--~~~~~~di  322 (514)
                         .+.   .++++++++++++||||.+++   +++|.++|+++|+++|+||+|..........+.....  +...+..+
T Consensus       143 ---~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i  216 (364)
T PRK07865        143 ---ELG---PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLL  216 (364)
T ss_pred             ---hCC---cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEE
Confidence               011   134789999999999999999   6888999999999999999999433221111111110  11224679


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +++||||.++.+|   ||+++++++++.+.......  +...+.+.+.++.++++.  ..+.++.++.++++++.+.+.|
T Consensus       217 ~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L  292 (364)
T PRK07865        217 AVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHA--GMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPAL  292 (364)
T ss_pred             EEeechhccCCCceeeEEEecCHHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998767   99999999999887655443  235677777777777753  3456678888899999999999


Q ss_pred             HhCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        400 IQIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       400 ~~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      ++.|+.+..+.++ ++++.++  .+..++.+.| .++||.+.++..+. +...+++|++++.  +++++++++++|+
T Consensus       293 ~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~l-~~~gv~v~pg~~f~-~~~~~~iRi~~~~--~~~~~~~~~~~l~  363 (364)
T PRK07865        293 EAAGFRVDHSEAGLYLWATRG--EDCWDTVAWL-AERGILVAPGDFYG-PAGAQHVRVALTA--TDERIAAAVERLA  363 (364)
T ss_pred             HHcCCcccCCCccEEEEEeCC--CCHHHHHHHH-HHCCEEEeCccccC-cCCCCEEEEEecC--CHHHHHHHHHHhh
Confidence            9988877666666 4556553  2356788888 49999999988643 3346799999983  6899999998875

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.95  E-value=1.1e-25  Score=231.66  Aligned_cols=339  Identities=13%  Similarity=0.122  Sum_probs=231.2

Q ss_pred             CCceeeecccCC------CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--------CcEEEE
Q psy16848         16 SNRVTCRLSSVQ------YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--------EAGLVF   81 (514)
Q Consensus        16 ~g~~~~d~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~i~~   81 (514)
                      .|..++|+...+      +..++++.+++.+.+.....  ..    ++......++++.++++++.        ++.+++
T Consensus        29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~--~~----Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t  102 (403)
T TIGR01265        29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKF--NG----YAPSVGALAAREAVAEYLSSDLPGKLTADDVVLT  102 (403)
T ss_pred             cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCC--CC----CCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEe
Confidence            567889996543      44578888888887764211  11    11222345566677777653        345666


Q ss_pred             eccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         82 TSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        82 ~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +++|+|+..++.++..  +||.|+++.++|......++..|.+++.++....+                           
T Consensus       103 ~G~t~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~---------------------------  153 (403)
T TIGR01265       103 SGCSQAIEICIEALAN--PGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEK---------------------------  153 (403)
T ss_pred             cChHHHHHHHHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEecCCccc---------------------------
Confidence            6678888888888865  99999999999887665555555554433210000                           


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                       +.                                             
T Consensus       154 ---------------------------------~~---------------------------------------------  155 (403)
T TIGR01265       154 ---------------------------------DW---------------------------------------------  155 (403)
T ss_pred             ---------------------------------CC---------------------------------------------
Confidence                                             00                                             


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCc
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQL  317 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~  317 (514)
                      ..|.+.+++.+    .++++++++++|+||||.+++   +++|.++|+++|+++|+|++|.....+. ...++.....  
T Consensus       156 ~~d~~~l~~~~----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--  229 (403)
T TIGR01265       156 EIDLDGLEALA----DEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFAS--  229 (403)
T ss_pred             ccCHHHHHHHh----CcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhcc--
Confidence            01333443333    446789999999999999998   7999999999999999999999443322 2112222221  


Q ss_pred             cCceEEEcCCcccccCCC---eEEEec-H-H-----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVGT-K-N-----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~~-~-~-----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      ....++++||||.++.+|   ||++++ + +     +++.+......   ....+.+.+.++.++++......+++.++.
T Consensus       230 ~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  306 (403)
T TIGR01265       230 IVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQR---ILGPATIVQGALPDILENTPQEFFDGKISV  306 (403)
T ss_pred             CCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhh---hcCCChHHHHHHHHHHHhChHHHHHHHHHH
Confidence            235799999999988778   999874 2 2     34444333211   224577888888888864334567778888


Q ss_pred             HHHHHHHHHHHHHhC-CCccccC-CCcEEEEEeCCC-----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        388 HQDIVAYLRNELIQI-GFPVEHT-PSHIIPIKIGNP-----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~i~l~~~-----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      ++++++.+.+.|+.. ++.+..+ .+.+++++++..     .+..++++.+++++||.+.|+..+.   .++++|++++ 
T Consensus       307 ~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~---~~~~iRis~~-  382 (403)
T TIGR01265       307 LKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFG---LPNWVRITIT-  382 (403)
T ss_pred             HHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccC---CCCeEEEEec-
Confidence            999999999999887 7765444 456778887643     2467888887668899999998753   2579999998 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHc
Q psy16848        461 FHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~  481 (514)
                       ..++.+++++++|++++++.
T Consensus       383 -~~~~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       383 -VPESMLEEACSRIKEFCERH  402 (403)
T ss_pred             -CCHHHHHHHHHHHHHHHHhc
Confidence             35788999999999888653

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07483 hypothetical protein; Provisional

Probab=99.95  E-value=1e-25  Score=232.70  Aligned_cols=375  Identities=17%  Similarity=0.139  Sum_probs=234.4

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   ..++  ||+|.+++.+++++.......  .  -..+...++.+++++++.  .++++|++||++|+
T Consensus        28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~--~--~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAv  103 (443)
T PRK07483         28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS--F--FTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAV  103 (443)
T ss_pred             CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCcccc--c--cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHH
Confidence            67777777542   2223  899999999999974321111  1  124677889999999863  46789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++.....                                        .-.+..+++++++.+++.||-.  +.+.  
T Consensus       104 e~AlklAr~~----------------------------------------~~~~g~~~r~~Ii~~~~~YHG~t~~a~s--  141 (443)
T PRK07483        104 EAALKLARQY----------------------------------------FVEIGQPQRRHFIARRQSYHGNTLGALA--  141 (443)
T ss_pred             HHHHHHHHHH----------------------------------------HHhcCCCCCcEEEEECCCcCCcCHHHhh--
Confidence            9999644320                                        0001124567788888888621  1110  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                ..+..         ........+..+..-++.++.......+.....+.....+
T Consensus       142 --------------------------~s~~~---------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (443)
T PRK07483        142 --------------------------IGGNA---------WRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLAD  186 (443)
T ss_pred             --------------------------hcCCc---------ccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHH
Confidence                                      00000         0000000000000000000000000000000000000023


Q ss_pred             HHHHHHhhccCCCceEEEEecCCC-CCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHS-MTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~n-ptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      .+++.+.+...+++++|++++++. ..|...+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++  .|
T Consensus       187 ~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~--a~~~~gv--~P  262 (443)
T PRK07483        187 ELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLF--ACEEDGV--AP  262 (443)
T ss_pred             HHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHH--HHhhcCC--CC
Confidence            445545443346789999999996 4577665    8999999999999999999999 66655322  1234454  79


Q ss_pred             eEEEcCCcccccCC---CeEEEecHHHHHHHHhhcC--ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAA--GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       321 di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      |++  +++|.+++.   -|.+++++++.+.+.....  ..+.+++.+++.++++.++|+.+.++.   +.++.+++.+++
T Consensus       263 Div--~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~---l~~~~~~~g~~l  337 (443)
T PRK07483        263 DLV--TIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDG---LLANVRARGEQL  337 (443)
T ss_pred             Cee--eehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence            999  899999761   2778889998887754321  122355789999999999999987665   778888888888


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCCC-----------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGNP-----------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~~-----------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      ++.|+++  ..+.   +...|.++.+++...           .....+.+.++ ++|+.+.+..........+.+|+.++
T Consensus       338 ~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~~~~~~~~~~~~l~~~Pp  416 (443)
T PRK07483        338 RARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAM-ARGLMVYPMGGTIDGVRGDHVLLAPP  416 (443)
T ss_pred             HHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHH-HCCcEEEecCccccCCCCCEEEEECC
Confidence            8888764  3332   244667777776321           12356778886 89999975422111112468999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHc
Q psy16848        460 PFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.+|++|+|+++++|+++++++
T Consensus       417 L~it~~eid~~~~~l~~~l~~~  438 (443)
T PRK07483        417 FIITAAQIDEIVERLGDAIDAA  438 (443)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999765

>PRK12403 putative aminotransferase; Provisional

Probab=99.95  E-value=1.1e-25  Score=233.61  Aligned_cols=359  Identities=16%  Similarity=0.117  Sum_probs=233.9

Q ss_pred             CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   ..+  +||+|.+++.+++++++...   ....+..+...+++++++++++  .++++|++||++|+
T Consensus        52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~---~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~  128 (460)
T PRK12403         52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYN---MFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEAN  128 (460)
T ss_pred             CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCee---cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHH
Confidence            56667776332   123  38999999999999865421   2223456788999999999986  56889999999999


Q ss_pred             ccchhhcccc----C-CCceEE--ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         89 DSTLFTLGKM----I-PGLHYI--SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        89 ~~~l~~l~~~----~-~gd~v~--~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +.|++.....    + ++..++  ....+|.+++.+++..+........              ...|.+           
T Consensus       129 e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~--------------~~~~~~-----------  183 (460)
T PRK12403        129 EVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMG--------------GLIPDV-----------  183 (460)
T ss_pred             HHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccC--------------CCCCCC-----------
Confidence            9999876421    1 333333  3455688877777666543210000              000000           


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                .-+|.++...   .+......+
T Consensus       184 ----------------------------------------------------------~~~~~p~~~~---~~~~~~~~~  202 (460)
T PRK12403        184 ----------------------------------------------------------AHIDEPYWYA---NGGELTPAE  202 (460)
T ss_pred             ----------------------------------------------------------EEeCCCcccc---cccCCChHH
Confidence                                                                      0000000000   000000000


Q ss_pred             CC--ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccC
Q psy16848        242 HN--DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERD  314 (514)
Q Consensus       242 ~~--d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~  314 (514)
                      .+  +.+.+++.+.+...+++++|+++++++..|.+.+    +++|+++|++||+++|.||+++ +|..|+.+  ..+.+
T Consensus       203 ~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~--a~e~~  280 (460)
T PRK12403        203 FGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF--AHEHF  280 (460)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh--hhhhc
Confidence            01  1244555554433456899999999999999887    9999999999999999999997 66655422  12445


Q ss_pred             CCccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      ++  .+|++  +++|++++.   -|.+++++++.+.+......  ++.+++.+++.++++.++|+.+.++.   ..++.+
T Consensus       281 gv--~PDiv--~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~---l~~~~~  353 (460)
T PRK12403        281 GF--EPDTL--SIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEG---VVTRVK  353 (460)
T ss_pred             CC--CCCeE--EEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHH
Confidence            55  78999  799999851   26667888888877532222  22355789999999999999987655   677775


Q ss_pred             -HHHHHHHHHHHhC--CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        390 -DIVAYLRNELIQI--GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       390 -~~~~~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                       ++.+++++.|+++  ..++   +...|.++.+++....           ....+...++ ++|+.+.+.        .+
T Consensus       354 ~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~--------~~  424 (460)
T PRK12403        354 DDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGF-EEGVIIRST--------LG  424 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHH-hCCEEEEec--------CC
Confidence             7788888877654  3332   3446778777774210           0123445565 899998631        13


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+|++++...|++|+++++++++++++++
T Consensus       425 ~~~l~Ppl~it~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        425 RMIMAPALVAGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999875

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=8.5e-26  Score=234.13  Aligned_cols=207  Identities=23%  Similarity=0.264  Sum_probs=160.2

Q ss_pred             CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      .+++++|++++++...|...+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++  .+|++  +++|.+
T Consensus       217 ~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f--a~~~~gv--~PDiv--~~gK~l  290 (443)
T PRK06058        217 ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF--ACEHEGI--VPDLI--TTAKGI  290 (443)
T ss_pred             CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh--HHHhcCC--CCCEE--EEcccc
Confidence            357899999999988888876    8999999999999999999998 55554322  1234444  78999  789999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV  406 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  406 (514)
                      ++ |   |++++++++.+.+.......  +++.+++.++++.++|+.+.++.   +.++.+++.+++.+.|+++  ..++
T Consensus       291 ~~-G~Pi~av~~~~~i~~~~~~~~~~~--T~~gnpl~~aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~  364 (443)
T PRK06058        291 AG-GLPLSAVTGRAEIMDAPHPGGLGG--TYGGNPVACAAALAAIETIEEDD---LVARARQIEALMTDRLRALAAEDDR  364 (443)
T ss_pred             cC-CCccEEEEEcHHHHhhccCCCCCC--CCCCCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            86 6   88999999888776543333  55889999999999999886555   7788888889999888775  2333


Q ss_pred             ---ccCCCcEEEEEeCCC-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        407 ---EHTPSHIIPIKIGNP-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       407 ---~~~~~~~~~i~l~~~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                         +...|.++.+.+...       .....+.+.++ ++||.+.++..     ..+++|+.++..+|+++++++++++++
T Consensus       365 i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~-----~~~~lr~~Ppl~~t~~~i~~~~~~l~~  438 (443)
T PRK06058        365 IGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGT-----YGNVIRLLPPLVIGDELLREGLDVLEA  438 (443)
T ss_pred             EEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCC-----CCCEEEEECCCccCHHHHHHHHHHHHH
Confidence               355677887777321       12456777775 89999975422     135899999999999999999999999


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      +++++
T Consensus       439 ~l~~~  443 (443)
T PRK06058        439 ALADL  443 (443)
T ss_pred             HHHhC
Confidence            98753

>PLN02656 tyrosine transaminase

Probab=99.95  E-value=1.7e-25  Score=230.55  Aligned_cols=344  Identities=12%  Similarity=0.109  Sum_probs=230.2

Q ss_pred             cCCceeeecccCC------CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEecc
Q psy16848         15 KSNRVTCRLSSVQ------YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSC   84 (514)
Q Consensus        15 ~~g~~~~d~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sG   84 (514)
                      .+|..++++.-.+      +..++.+.+++.+.+.....  .++....|..++.+++.+.+.+..|    .+.+++++++
T Consensus        28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~  105 (409)
T PLN02656         28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF--NGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGC  105 (409)
T ss_pred             ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCCh
Confidence            3677889996433      33467888888887775211  1122223444555555555544433    2345656666


Q ss_pred             ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         85 YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        85 t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++++..++.++..  +||.|++++++|.......+..|.+++.++....+                              
T Consensus       106 ~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~------------------------------  153 (409)
T PLN02656        106 TQAIDVALSMLAR--PGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEK------------------------------  153 (409)
T ss_pred             HHHHHHHHHHHhC--CCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcC------------------------------
Confidence            7778778877765  99999999999977665555555555443220000                              


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                    +.                                             ..|
T Consensus       154 ------------------------------~~---------------------------------------------~~d  158 (409)
T PLN02656        154 ------------------------------GW---------------------------------------------EVD  158 (409)
T ss_pred             ------------------------------CC---------------------------------------------CCC
Confidence                                          00                                             013


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCc
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNM  320 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~  320 (514)
                      .+.+++.+    +++++++++++|+||||.+++   +++|.++|+++|+++|+||+|....+. +...++....  ...+
T Consensus       159 ~~~l~~~~----~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~  232 (409)
T PLN02656        159 LDAVEALA----DQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFG--SIVP  232 (409)
T ss_pred             HHHHHHHh----ccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhc--ccCc
Confidence            33443333    446889999999999999987   789999999999999999999943332 2211221111  1246


Q ss_pred             eEEEcCCcccccCCC---eEEEec--------HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVGT--------KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      .++++||||.++.+|   ||++++        +++++.+.......   .+.+.+.+.++..+++...+..+++.++.++
T Consensus       233 vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~  309 (409)
T PLN02656        233 VLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDIL---GGPATFIQAAVPTILEQTDESFFKKTINILK  309 (409)
T ss_pred             EEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhh---cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            899999999988878   999984        57777776554321   2457788888888886422346778888999


Q ss_pred             HHHHHHHHHHHhC-CCc-cccCCC-cEEEEEeCCC-----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        390 DIVAYLRNELIQI-GFP-VEHTPS-HIIPIKIGNP-----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       390 ~~~~~l~~~L~~~-g~~-~~~~~~-~~~~i~l~~~-----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++++.+.+.|++. ++. +..+.+ .+++++++..     .+..+++..+++++||.+.|+..+.   ..+++|++++. 
T Consensus       310 ~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg---~~~~iRi~~~~-  385 (409)
T PLN02656        310 QSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVG---LKNWLRITFAA-  385 (409)
T ss_pred             HHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcC---CCCeEEEEeCC-
Confidence            9999999999887 333 234544 4667777521     1244555555568999999998753   25799999993 


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                       +++++++.+++|++++.+.
T Consensus       386 -~~e~l~eal~rl~~~~~~~  404 (409)
T PLN02656        386 -DPSSLEEALGRIKSFYLRH  404 (409)
T ss_pred             -CHHHHHHHHHHHHHHHHHh
Confidence             7899999999999988764

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.95  E-value=1.7e-25  Score=235.01  Aligned_cols=337  Identities=16%  Similarity=0.131  Sum_probs=224.1

Q ss_pred             hHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecc-ccccccchhhcc-ccCCCceEEec
Q psy16848         33 GGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSC-YVANDSTLFTLG-KMIPGLHYISD  107 (514)
Q Consensus        33 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sG-t~a~~~~l~~l~-~~~~gd~v~~~  107 (514)
                      .+.+++.+.++..+.....+....|..++.+.+.+++.+..|.   +..|++|+| ++++..++.++. .  +||.|+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~--~gD~Vlv~  169 (481)
T PTZ00377         92 DVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD--PSDGVMIP  169 (481)
T ss_pred             HHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccC--CCCEEEEC
Confidence            5666666666653322233334445566666666666554342   233555555 566777777775 4  99999999


Q ss_pred             CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848        108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       108 ~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|......++..|.+++.++....                                                      
T Consensus       170 ~P~y~~y~~~~~~~g~~~v~v~~~~~------------------------------------------------------  195 (481)
T PTZ00377        170 IPQYPLYSAAITLLGGKQVPYYLDEE------------------------------------------------------  195 (481)
T ss_pred             CCCchhHHHHHHHcCCEEEEEEeccc------------------------------------------------------
Confidence            99999988888888877765542100                                                      


Q ss_pred             ccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC--CCceEEEE
Q psy16848        188 VGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV--KIPKLVAF  265 (514)
Q Consensus       188 ~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~--~~~~~vv~  265 (514)
                            ++++                                             -|.+.+++.+.+...  ++++++++
T Consensus       196 ------~~~~---------------------------------------------~d~~~l~~~l~~~~~~~~~~k~l~l  224 (481)
T PTZ00377        196 ------KGWS---------------------------------------------LDQEELEEAYEQAVRNGITPRALVV  224 (481)
T ss_pred             ------cCCC---------------------------------------------CCHHHHHHHHHHHHhcCCCeeEEEE
Confidence                  0000                                             145566666654221  26888888


Q ss_pred             ecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CC-CCCCcccc-CCCcc-----CceEEEcCCcccc-cC
Q psy16848        266 ETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GE-HGAGIGER-DGQLH-----NMDIISGTLGKAF-GN  333 (514)
Q Consensus       266 ~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~-~~~~~~~~-~~~~~-----~~di~~~S~sK~l-g~  333 (514)
                      ++|+||||.+++   +++|+++|++|++++|+||+|....+ +. ...++... .....     ...++++||||.+ +.
T Consensus       225 ~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~  304 (481)
T PTZ00377        225 INPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGE  304 (481)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccC
Confidence            899999999999   89999999999999999999994433 21 11121111 01111     1468899999985 65


Q ss_pred             CC---eEEEe---cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh---------hhchHHHHHHHHHHHHHHHHHH
Q psy16848        334 IG---GYIVG---TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL---------SSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       334 ~G---G~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      +|   ||+++   ++++++.+......   ..+.+.+.+.++..+++..         ......+.++.++++++.+.+.
T Consensus       305 ~GlRiG~~~~~~~p~~li~~l~~~~~~---~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~  381 (481)
T PTZ00377        305 CGRRGGYFELTNIPPEVREQIYKLASI---NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDE  381 (481)
T ss_pred             CcCceEEEEEeCCCHHHHHHHHHHhhe---ecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67   99986   88999888775532   2256777888888877421         0112334445678899999999


Q ss_pred             HHhC-CCccccCCCc-EEEEEeC--CCc----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        399 LIQI-GFPVEHTPSH-IIPIKIG--NPA----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       399 L~~~-g~~~~~~~~~-~~~i~l~--~~~----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      |+++ |+.+..+.++ +++++++  ...          ...+++..+++++||.+.|+..+....+.+++|++++  .++
T Consensus       382 L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~  459 (481)
T PTZ00377        382 LNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPE  459 (481)
T ss_pred             HhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCH
Confidence            9987 8887777765 4444442  211          1334566666789999999997654345679999998  678


Q ss_pred             HHHHHHHHHHHHHHHHc
Q psy16848        465 EMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~  481 (514)
                      +++++++++|++++++.
T Consensus       460 e~l~~~l~rl~~~~~~~  476 (481)
T PTZ00377        460 EQIEEMVKKIKEFHESF  476 (481)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            89999999999988764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.95  E-value=2.7e-25  Score=228.92  Aligned_cols=344  Identities=12%  Similarity=0.099  Sum_probs=227.4

Q ss_pred             cCCceeeecccCCC------CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEecc
Q psy16848         15 KSNRVTCRLSSVQY------KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSC   84 (514)
Q Consensus        15 ~~g~~~~d~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sG   84 (514)
                      ..+...|++.-.++      -.+|.+.+++.+.+.....  ..+....|..++.+.+.+.+.+..|    .+..++++++
T Consensus        29 ~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~  106 (409)
T PLN00143         29 DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKF--NSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGC  106 (409)
T ss_pred             CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCC--CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecCh
Confidence            36678899865444      3466788888888775211  1122233555666666665555433    2334544555


Q ss_pred             ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         85 YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        85 t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++++..++.++..  +||.|+++.++|......++..|.+++.++..+.+                              
T Consensus       107 ~~al~~~~~~l~~--~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~------------------------------  154 (409)
T PLN00143        107 KHAAEIIIKVLAR--PEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEK------------------------------  154 (409)
T ss_pred             HHHHHHHHHHHcC--CCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCC------------------------------
Confidence            6677888888866  99999999999988877766666665544321000                              


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                    +.                                             .-|
T Consensus       155 ------------------------------~~---------------------------------------------~~d  159 (409)
T PLN00143        155 ------------------------------GW---------------------------------------------EVD  159 (409)
T ss_pred             ------------------------------CC---------------------------------------------cCC
Confidence                                          00                                             003


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCc
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNM  320 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~  320 (514)
                      ++.+++.    ..++++++++++||||||.+++   +++|.++|++|++++|+||+|.....+ ....++....  ....
T Consensus       160 ~~~l~~~----~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~--~~~~  233 (409)
T PLN00143        160 LDAVEAI----ADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFA--SIVP  233 (409)
T ss_pred             HHHHHHh----cccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhc--ccCc
Confidence            3444333    3345789999999999999999   788999999999999999999944332 2111111111  1246


Q ss_pred             eEEEcCCcccccCCC---eEEEec-H-HHH------HHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVGT-K-NFI------DTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~~-~-~~~------~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      .++++||||.++.+|   ||++++ + .++      +.+.......   ...+.+.+.++.++|+......+++.+++++
T Consensus       234 vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  310 (409)
T PLN00143        234 VITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPA---PFPPTFIQAAIPEILEKTTEDFFSKTINILR  310 (409)
T ss_pred             EEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhcc---CCCCchHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            899999999998878   999883 3 333      3333222111   1235677777777776322345677888888


Q ss_pred             HHHHHHHHHHHhCCCcc-c-cCC-CcEEEEEeCC----C-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        390 DIVAYLRNELIQIGFPV-E-HTP-SHIIPIKIGN----P-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       390 ~~~~~l~~~L~~~g~~~-~-~~~-~~~~~i~l~~----~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++++.+.+.|++++... . .+. +.+++++++.    . .+..+++..+++++||.+.|+..+.   .++++|++++  
T Consensus       311 ~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~---~~~~iRi~~~--  385 (409)
T PLN00143        311 AALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG---LKNWLRITFA--  385 (409)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC---CCCeEEEEEc--
Confidence            88899999998874322 2 343 4577788763    1 2356777666568999999998653   3579999998  


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+++++++.+++|++++++.
T Consensus       386 ~~~~~l~~al~rl~~~l~~~  405 (409)
T PLN00143        386 VEQSSLEDGLGRLKSFCGRH  405 (409)
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999988765

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.95  E-value=3.8e-25  Score=224.06  Aligned_cols=323  Identities=20%  Similarity=0.173  Sum_probs=223.9

Q ss_pred             cCCceeeecccCCC-CC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC----cEEEEeccc-cc
Q psy16848         15 KSNRVTCRLSSVQY-KV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE----AGLVFTSCY-VA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~~~-~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~~~sGt-~a   87 (514)
                      +.+...+|+..++. .. .|.+.+++.+.....     .+....|..++.+++++++.+.+|.+    ..+++++|+ ++
T Consensus        18 ~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~-----~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~   92 (357)
T TIGR03539        18 SHPDGIVDLSVGTPVDPVPPLIRAALAAAADAP-----GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKEL   92 (357)
T ss_pred             hCCCCeEEccCCCCCCCCCHHHHHHHHHHHhhC-----CCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHH
Confidence            45667899976542 22 567777776655432     12223456677777877777765532    346666665 45


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++..+. ..+||.|+++.+.|......++..|++++.++  +.+.                                
T Consensus        93 i~~~~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~--~~~~--------------------------------  137 (357)
T TIGR03539        93 VAWLPTLLG-LGPGDTVVIPELAYPTYEVGALLAGATPVAAD--DPTE--------------------------------  137 (357)
T ss_pred             HHHHHHHHc-CCCCCEEEECCCCcHHHHHHHHhcCCEEeccC--Chhh--------------------------------
Confidence            555555552 23999999999999988877777776665431  1110                                


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (357)
T TIGR03539       138 --------------------------------------------------------------------------------  137 (357)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCcccc--CCCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGER--DGQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~--~~~~~~~di  322 (514)
                             ...++++++++++++||||.+++   +++|.++|++||+++|+||+|.....+.........  .+...+..+
T Consensus       138 -------l~~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  210 (357)
T TIGR03539       138 -------LDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLL  210 (357)
T ss_pred             -------cCccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEE
Confidence                   11135789999999999999998   678999999999999999999832222211111111  011224579


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +++||||.++.+|   ||+++++++++.+.......  +.+.+.+.+.++.++++.  ..++.+.++.++++++++.+.|
T Consensus       211 ~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L  286 (357)
T TIGR03539       211 AVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHA--GLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPAL  286 (357)
T ss_pred             EEeccccccCCCceeEEEEecCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999997767   99999999998887655433  235677777777777752  3456678888899999999999


Q ss_pred             HhCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        400 IQIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       400 ~~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      ++.|+.+..+.++ ++++.++.  +..++.+.| .++||.+.|+.++ ...+++++|++++.  +++++++++++|
T Consensus       287 ~~~g~~~~~p~~~~~~~~~~~~--~~~~~~~~l-~~~gV~v~pg~~f-~~~~~~~iRis~~~--~~~~i~~~~~~l  356 (357)
T TIGR03539       287 EKAGFRIDHSEAGLYLWATRGE--DAWDTVDRL-AELGILVAPGDFY-GPAGSQHVRVALTA--TDERIAAAVARL  356 (357)
T ss_pred             HHcCCCCcCCCccEEEEEECCC--CHHHHHHHH-HhCCEEECCcccc-CCCCCCeEEEEecC--CHHHHHHHHHhh
Confidence            9888877767666 45555543  466788888 5999999998864 33456899999984  678899988876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=2e-25  Score=226.96  Aligned_cols=327  Identities=16%  Similarity=0.155  Sum_probs=230.1

Q ss_pred             CCce-eeecccCC-CC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccccc-ccc
Q psy16848         16 SNRV-TCRLSSVQ-YK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYVA-NDS   90 (514)
Q Consensus        16 ~g~~-~~d~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~a-~~~   90 (514)
                      .|+. +++++.++ .+ .+|.+.+++.+.+... ..+       +.. ...++++.++++++.+ +.+++++|++. +..
T Consensus        29 ~g~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~Y-------~~~-~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~   99 (369)
T PRK08153         29 RGRPFRARIGANESGFGPSPSVIAAMREAAAEI-WKY-------GDP-ENHDLRHALAAHHGVAPENIMVGEGIDGLLGL   99 (369)
T ss_pred             cCCcceeEecCCCCCCCCCHHHHHHHHHHHHHh-hcC-------CCC-ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHH
Confidence            5554 45786543 33 4788999888776531 111       111 1468999999998853 45777777765 445


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.+++.  +||.|+++.++|......++..|.+++.++.                                        
T Consensus       100 ~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~----------------------------------------  137 (369)
T PRK08153        100 IVRLYVE--PGDPVVTSLGAYPTFNYHVAGFGGRLVTVPY----------------------------------------  137 (369)
T ss_pred             HHHHhcC--CCCEEEECCCcchHHHHHHHHcCCeEEEeeC----------------------------------------
Confidence            5555555  9999999999998877666666665554332                                        


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                             .++...+++
T Consensus       138 -----------------------------------------------------------------------~~~~~~~~~  146 (369)
T PRK08153        138 -----------------------------------------------------------------------RDDREDLDA  146 (369)
T ss_pred             -----------------------------------------------------------------------CCCCCCHHH
Confidence                                                                                   111122223


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      .++.....+++++++++|+||||.+++.+++.++++.+  ++++|+||+|.....+..   ...... ..+..++++|||
T Consensus       147 l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~---~~~~~~-~~~~~i~~~SfS  222 (369)
T PRK08153        147 LLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGA---APPIDT-DDPNVIRMRTFS  222 (369)
T ss_pred             HHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCccc---chhhhh-cCCCEEEEecch
Confidence            33333344678999999999999999977777776654  899999999983322111   111111 224679999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |.+|.+|   ||+++++++++.+......+    +.+++.+.++.++++  ..+..++.++.++++++++.+.|++.|+.
T Consensus       223 K~~g~~GlRiG~~v~~~~~~~~l~~~~~~~----~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~~~~~~L~~~g~~  296 (369)
T PRK08153        223 KAYGLAGARVGYAIGAPGTIKAFDKVRNHF----GMNRIAQAAALAALK--DQAYLAEVVGKIAAARDRIAAIARANGLT  296 (369)
T ss_pred             HhccCcchheeeeecCHHHHHHHHHhhcCC----CCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            9999778   99999999999887765433    578888888888886  33456778888899999999999988876


Q ss_pred             cccCCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEe-cccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        406 VEHTPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQ-PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~-~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +.++.+.++++.++. .....++.+.|+ ++||.++ ++.    ...++++|++++   ++++++++++++++++...+
T Consensus       297 ~~p~~~~f~~~~~~~~~~~a~~l~~~l~-~~Gi~v~~p~~----~~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        297 PLPSATNFVAIDCGRDGAFARAVLDGLI-ARDIFVRMPGV----APLDRCIRVSCG---PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             cCCCcCcEEEEECCCCcccHHHHHHHHH-HCCeEEeeCCC----CCCCCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence            656667777777752 345678888886 8999995 432    123569999998   79999999999999887653

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.95  E-value=2.2e-25  Score=230.69  Aligned_cols=365  Identities=13%  Similarity=0.100  Sum_probs=233.6

Q ss_pred             CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   .-+  +||++.+++.+|+++.......    .-..+...++.+++++.++.  ++++|++|||+|+
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~----~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAv  127 (453)
T PRK06943         52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLA----GCTHEPAIELAERLAALTGGTLGHAFFASDGASAV  127 (453)
T ss_pred             CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCcccc----ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHH
Confidence            45555555332   112  3899999999999985432221    11246778899999998763  5788899999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++...+.                                        .-.+..++++++|.++++||..  |.++- 
T Consensus       128 e~AlKlA~~~----------------------------------------~~~rg~~~r~~Ii~~~~~yHG~t~gals~-  166 (453)
T PRK06943        128 EIALKMSFHA----------------------------------------WRNRGRGDKREFVCLANGYHGETIGALGV-  166 (453)
T ss_pred             HHHHHHHHHH----------------------------------------HHHhCCCCCCEEEEECCCcCCCcHHhhcc-
Confidence            9999655320                                        0011223566788888888621  11110 


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                 ++..         ........+......++.++..... .+.....+..++++
T Consensus       167 ---------------------------~~~~---------~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~  209 (453)
T PRK06943        167 ---------------------------TDVA---------LFKDAYDPLIRHAHVVASPDARGAR-PGETAADVAARALA  209 (453)
T ss_pred             ---------------------------cCCh---------hhhcccccCCCCCEEECCCCccccc-cCCCHHHHHHHHHH
Confidence                                       0000         0000000000000000100000000 00000000012456


Q ss_pred             HHHHHHhhccCCCceEEEEec-CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        247 HLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      .+++.+++. .+++++|++++ +++..|...+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++  .|
T Consensus       210 ~l~~~l~~~-~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f--a~~~~gv--~P  284 (453)
T PRK06943        210 DVRRLFAER-AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF--ACEQAGV--WP  284 (453)
T ss_pred             HHHHHHHhC-CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh--HHHhCCC--CC
Confidence            667777643 35799999999 5998898766    8999999999999999999998 76665432  1234555  79


Q ss_pred             eEEEcCCcccccCC---CeEEEecHHHHHHHHhhc--C--ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYA--A--GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       321 di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                      |++  +++|++++.   -|.+++++++.+.+....  .  ....+++.+++.++++.++|+.+.++.   +.++.+++.+
T Consensus       285 Div--t~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~G~  359 (453)
T PRK06943        285 DFL--CLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDD---VLARNARKSA  359 (453)
T ss_pred             CeE--eeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence            999  899999761   277888999888775321  0  122255789999999999999987665   6778888888


Q ss_pred             HHHHHHHhC-C---CccccCCCcEEEEEeCCCc-----cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        394 YLRNELIQI-G---FPVEHTPSHIIPIKIGNPA-----LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       394 ~l~~~L~~~-g---~~~~~~~~~~~~i~l~~~~-----~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      ++.+.|+++ .   +.-+...|.++.+++....     ....+.+.++ ++||.+.+.        .+.+|++++..+|+
T Consensus       360 ~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~-~~Gll~~~~--------g~~l~~~Ppl~it~  430 (453)
T PRK06943        360 RLRAALAPLAAHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAAL-ERELLLRPI--------GTTVYLMPPYVLDD  430 (453)
T ss_pred             HHHHHHHHHhcCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHH-HCCcEEEec--------CCEEEEeCCCcCCH
Confidence            888888775 2   2223456678888775211     2456778886 899998632        13699999999999


Q ss_pred             HHHHHHHHHHHHHHHHc
Q psy16848        465 EMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~  481 (514)
                      +|+++++++++++++++
T Consensus       431 ~eid~~~~~l~~al~~~  447 (453)
T PRK06943        431 DEIAWLAERTRATLDAT  447 (453)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999875

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.95  E-value=1.4e-25  Score=229.13  Aligned_cols=335  Identities=19%  Similarity=0.198  Sum_probs=228.5

Q ss_pred             eecccCCCCCChhHHHHHHHHHHHhCCCCCC--cCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhhc
Q psy16848         21 CRLSSVQYKVPKGGRKCLGEALEKFGTGAGG--TRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        21 ~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~l   95 (514)
                      .|-++..+..++.+.+++.+.++.++...+.  +....+..+..+++++.+++++|.+   ..++++|+|+++..++.++
T Consensus         3 ld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~   82 (376)
T TIGR01977         3 FDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL   82 (376)
T ss_pred             ccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc
Confidence            3444444445678999999988876422211  1111122467789999999999865   3455667788888888887


Q ss_pred             cccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848         96 GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus        96 ~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                      ..  +||.|+++..+|.++...+..                                                       
T Consensus        83 ~~--~gd~vl~~~~~~~~~~~~~~~-------------------------------------------------------  105 (376)
T TIGR01977        83 LK--EGDHVITTPMEHNSVARPLEC-------------------------------------------------------  105 (376)
T ss_pred             cC--CCCEEEECcchhhHHHHHHHH-------------------------------------------------------
Confidence            55  999999999999887533211                                                       


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHHHHHhh
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLTQVLEN  254 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~  254 (514)
                                                                           .....|.+++.++. .+...+.+.+++
T Consensus       106 -----------------------------------------------------~~~~~g~~~~~v~~~~~~~~d~~~l~~  132 (376)
T TIGR01977       106 -----------------------------------------------------LKEQIGVEITIVKCDNEGLISPERIKR  132 (376)
T ss_pred             -----------------------------------------------------HHHHcCcEEEEEecCCCCCcCHHHHHH
Confidence                                                                 01112333333331 111112223333


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-C
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-N  333 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~  333 (514)
                      ..+++++++++++++||||.+.|+++|.++|+++|+++|+|+++++|..        +......++|++++|+||+++ +
T Consensus       133 ~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~--------~~~~~~~~~D~~~~s~~K~l~~p  204 (376)
T TIGR01977       133 AIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVI--------PIDMTELAIDMLAFTGHKGLLGP  204 (376)
T ss_pred             hcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCcc--------CCCchhcCCCEEEecccccccCC
Confidence            3345689999999999999999999999999999999999999997764        111113478999999999985 4


Q ss_pred             CC-eEEEecHHH-HHHHHhhcC---------------ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        334 IG-GYIVGTKNF-IDTIRSYAA---------------GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       334 ~G-G~l~~~~~~-~~~l~~~~~---------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      .| |+++.+++. +..+.....               .+. ..+.+.....+..++++.+.+.+.+.++++.+++.+++.
T Consensus       205 ~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~  283 (376)
T TIGR01977       205 QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFE-SGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLL  283 (376)
T ss_pred             CCceEEEEcCCcCcCceecCCCccccccccccccchhhcc-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            45 666555443 111111000               010 123456667788888988877788889999999999999


Q ss_pred             HHHHhC-CCccccC-----CCcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCC-------CCCCcEEEEEeCCCC
Q psy16848        397 NELIQI-GFPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTV-------PVGEEKIRLAPTPFH  462 (514)
Q Consensus       397 ~~L~~~-g~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~-------~~~~~~iRl~~~~~~  462 (514)
                      +.|.+. ++.+..+     ..+++.+.++. .+..++.+.|. ++ ||.++.+..+..       ....+.+|++++..+
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~L~-~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~  361 (376)
T TIGR01977       284 NGLREINKVKIYGPADPANRVGVVSFTVEG-IDSEEVADILD-EKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFN  361 (376)
T ss_pred             HHHhcCCCeEEeCCCCccccCCeEEEEECC-CCHHHHHHHHh-ccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCC
Confidence            999876 6655432     24577777754 45678889995 66 999988765432       123568999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy16848        463 TREMIDKFVTDLLA  476 (514)
Q Consensus       463 t~e~id~~~~~l~~  476 (514)
                      |++|+++++++|++
T Consensus       362 t~~dv~~~~~~l~~  375 (376)
T TIGR01977       362 TEEEIEKLLEALSE  375 (376)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999999976

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.95  E-value=1.2e-25  Score=229.97  Aligned_cols=335  Identities=18%  Similarity=0.162  Sum_probs=228.2

Q ss_pred             eecccCCCCCChhHHHHHHHHHHHhCCCCCCcC-cccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccc
Q psy16848         21 CRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTR-NISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGK   97 (514)
Q Consensus        21 ~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~   97 (514)
                      .|.++... .++.+.+++.+.++......+... ......+..+++++.+++++|.+  ..++++|||+++..++..+..
T Consensus         3 ld~aa~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~   81 (379)
T TIGR03402         3 LDNNATTR-VDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALA   81 (379)
T ss_pred             CCCcCCCC-CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence            44444333 257889998888775321111111 10112456788999999999965  356667788888888876532


Q ss_pred             -cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848         98 -MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH  176 (514)
Q Consensus        98 -~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (514)
                       ..++|+|+++..+|+++...++.                                                        
T Consensus        82 ~~~~~~~vv~~~~~~~s~~~~~~~--------------------------------------------------------  105 (379)
T TIGR03402        82 AQPEKRHIITTAVEHPAVLSLCQH--------------------------------------------------------  105 (379)
T ss_pred             hcCCCCeEEEcccccHHHHHHHHH--------------------------------------------------------
Confidence             23678999999999887633221                                                        


Q ss_pred             CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHH
Q psy16848        177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQV  251 (514)
Q Consensus       177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~  251 (514)
                                                                           +...|.+++.++.     .|.+.+++.
T Consensus       106 -----------------------------------------------------~~~~G~~v~~v~~~~~g~~~~~~l~~~  132 (379)
T TIGR03402       106 -----------------------------------------------------LEKQGYKVTYLPVDEEGRLDLEELRAA  132 (379)
T ss_pred             -----------------------------------------------------HHHcCCEEEEEccCCCCcCCHHHHHHh
Confidence                                                                 1112333333331     133444444


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +    +++++++++++++|++|..+|+++|.++|+++|+++++|++|+.|..        +.+....++|++++|.||.+
T Consensus       133 i----~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~--------~~~~~~~~~D~~~~s~~K~~  200 (379)
T TIGR03402       133 I----TDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI--------PIDLKEMNIDMLSLSGHKLH  200 (379)
T ss_pred             c----CCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECccccccc--------ccCcccCCCCEEEEcHHHcC
Confidence            3    45689999999999999999999999999999999999999997643        12211347899999999977


Q ss_pred             cCCC-eEEEecHHHHHHHHhhcCc-e----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-C
Q psy16848        332 GNIG-GYIVGTKNFIDTIRSYAAG-F----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I-G  403 (514)
Q Consensus       332 g~~G-G~l~~~~~~~~~l~~~~~~-~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g  403 (514)
                      |+.| |+++.+++..  +.+...+ .    ....+.+.....++.+++++.. +.++++.++.+++.+++.+.|++ + +
T Consensus       201 gp~G~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~  277 (379)
T TIGR03402       201 GPKGVGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELAT-EHLEEENTRVRALRDRLEAGLLARIPD  277 (379)
T ss_pred             CCCceEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            8877 8888776531  2111110 0    0122456666777788888764 46777888999999999999985 4 5


Q ss_pred             CccccCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEEeCCCCC
Q psy16848        404 FPVEHTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLAPTPFHT  463 (514)
Q Consensus       404 ~~~~~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~~~~~~t  463 (514)
                      +.+..+.    .+++.+.++. .+..++...| +++||.++++..|....                ..+.+|+|++.++|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t  355 (379)
T TIGR03402       278 ARLNGDPTKRLPNTVNISFEY-IEGEAILLLL-DMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNT  355 (379)
T ss_pred             EEEeCCCccCCCCEEEEEecC-CCHHHHHHhh-ccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCC
Confidence            5554332    2355555543 3467888888 58999999888765431                13689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q psy16848        464 REMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~~~  482 (514)
                      ++|||++++.|+++++++.
T Consensus       356 ~~di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       356 EEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.95  E-value=2.5e-26  Score=231.23  Aligned_cols=323  Identities=19%  Similarity=0.171  Sum_probs=221.3

Q ss_pred             ecccCCCCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCC
Q psy16848         22 RLSSVQYKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIP  100 (514)
Q Consensus        22 d~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~  100 (514)
                      ||++.++.+ +|.+.+++.+.+...    .    .++..+..+++++.+++++|.+..+++++||+++..++.++..  +
T Consensus         1 ~~~~~~~~~~~~~v~~a~~~~~~~~----~----~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~--~   70 (338)
T cd06502           1 DFRSDTVTGPTPEMLEAMAAANVGD----D----VYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQ--P   70 (338)
T ss_pred             CcccccCCCCCHHHHHHHHhcccCC----c----ccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcC--C
Confidence            688888776 678888887755321    1    2234567899999999999966788889999999999888865  9


Q ss_pred             CceEEecCccchhhhhh---hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848        101 GLHYISDAGNHASMIQG---IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  177 (514)
Q Consensus       101 gd~v~~~~~~h~~~~~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
                      ||.|+++++.|.++..+   .+..|.+++.++..+                                             
T Consensus        71 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---------------------------------------------  105 (338)
T cd06502          71 GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN---------------------------------------------  105 (338)
T ss_pred             CCeEEEecCcceeeecCCcHHHHcCceEEeecCCC---------------------------------------------
Confidence            99999999999776532   223444444332210                                             


Q ss_pred             ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc-
Q psy16848        178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-  256 (514)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~-  256 (514)
                                                                                     ...|.+.+++.+.+.. 
T Consensus       106 ---------------------------------------------------------------~~~d~~~l~~~i~~~~~  122 (338)
T cd06502         106 ---------------------------------------------------------------GKLTPEDLEAAIRPRDD  122 (338)
T ss_pred             ---------------------------------------------------------------CcCCHHHHHHHhhccCC
Confidence                                                                           0124555555554321 


Q ss_pred             --CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        257 --VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       257 --~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                        .++++++++++++|+ |.+++   +++|.++|+++|+++|+||+|..+.....+....   ....++|+++.|+||++
T Consensus       123 ~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~---~~~~~~d~~~~s~sK~~  198 (338)
T cd06502         123 IHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALK---TYKSGVDSVSFCLSKGG  198 (338)
T ss_pred             CcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHH---HHHhcCCEEEEeccccC
Confidence              136899999999998 54445   7889999999999999999986443221121111   11236788899999999


Q ss_pred             cCCCe-EEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Q psy16848        332 GNIGG-YIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP  410 (514)
Q Consensus       332 g~~GG-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  410 (514)
                      +.+|| +++.++++++.+......+..+.+.++..++++..+|+.   ....+..+++.++++++.+.|+++++.+.++.
T Consensus       199 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  275 (338)
T cd06502         199 GAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALEN---DLWLRRLRHDHEMARRLAEALEELGGLESEVQ  275 (338)
T ss_pred             CCccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            87664 456788898888765433322334555666666666652   23345667888888999999999877666667


Q ss_pred             CcEEEEEeCCC-ccHHHHHHHHH--HhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        411 SHIIPIKIGNP-ALNTKICDMLL--KEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       411 ~~~~~i~l~~~-~~~~~~~~~Ll--~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      ++++.+.++.. .....+.+.+.  .++|+.+.+..       .+++|++++..++++|++++++++++
T Consensus       276 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         276 TNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWG-------EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             CCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecC-------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            77877776532 22233433332  15799986532       26899999999999999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.95  E-value=1.8e-25  Score=232.49  Aligned_cols=207  Identities=20%  Similarity=0.265  Sum_probs=153.7

Q ss_pred             CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      .+++++|++++++...|.+++    +++|+++|++||+++|+||+|+ +++.|... ++ ...+.  .+|++  |++|.+
T Consensus       217 ~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~-a~-~~~~v--~pDi~--t~sK~l  290 (451)
T PRK06918        217 PETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYF-AI-EHFDV--VPDLI--TVSKSL  290 (451)
T ss_pred             CCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCcee-hh-HhcCC--CCCEE--eeehhh
Confidence            356899999999988898766    8999999999999999999998 55554321 11 22232  58877  999999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV  406 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  406 (514)
                      ++ |   |++++++++.+.+.......  +.+.+++.++++.++++.+.++.   ..++.+++.+++.+.|+++  +.+.
T Consensus       291 ~~-G~pig~v~~~~~i~~~~~~~~~~~--T~~g~~l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~l~~~~~~  364 (451)
T PRK06918        291 GA-GVPISGVIGRKEIMDESAPGELGG--TYAGSPLGCAAALAVLDIIEKEN---LNDRAIELGKVVMNRFEEMKNKYNC  364 (451)
T ss_pred             cC-CCccEEEEEcHHHHhccCCCCcCc--CCCcCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            86 6   99999999988876544333  55789999999999999886555   5556666667777766654  2322


Q ss_pred             ---ccCCCcEEEEEeC--------CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        407 ---EHTPSHIIPIKIG--------NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       407 ---~~~~~~~~~i~l~--------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                         +...|.++.+.+.        +......+.+.++ ++||.+.++..+     .+.+|++++..++++++++++++|+
T Consensus       365 ~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~Gvlv~~~~~~-----~~~lrl~p~l~~t~~~id~~l~~l~  438 (451)
T PRK06918        365 IGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEAN-KRGLLLLSAGTY-----GNVIRVLMPLVITDEQLEEGLTIIE  438 (451)
T ss_pred             ceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHH-HCCeEEeecCCC-----CCEEEEECCCccCHHHHHHHHHHHH
Confidence               3445666665552        1122456777775 899999875321     3689999998899999999999999


Q ss_pred             HHHHHc
Q psy16848        476 AVWKSL  481 (514)
Q Consensus       476 ~~l~~~  481 (514)
                      ++++++
T Consensus       439 ~~l~~~  444 (451)
T PRK06918        439 ESLQAC  444 (451)
T ss_pred             HHHHHH
Confidence            998765

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.95  E-value=2.7e-25  Score=235.42  Aligned_cols=343  Identities=12%  Similarity=0.080  Sum_probs=223.1

Q ss_pred             cCCceeeecccCCC-----CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--C-CcEEEEecc-c
Q psy16848         15 KSNRVTCRLSSVQY-----KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--K-EAGLVFTSC-Y   85 (514)
Q Consensus        15 ~~g~~~~d~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~-~~~i~~~sG-t   85 (514)
                      .+|..+++++.++.     -.++++.+++.+.+.. ..   ++....|..++.+++.+.+.+..+  . +..|++++| +
T Consensus       143 ~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~~---~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~  218 (517)
T PRK13355        143 AAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-TE---GYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVS  218 (517)
T ss_pred             HcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-CC---CCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHH
Confidence            46778899865332     2256788888887753 11   222233444444444444433222  1 233556655 5


Q ss_pred             cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         86 VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        86 ~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      +++..++.++..  +||.|+++.++|......++..|.+++.++...                                 
T Consensus       219 eal~~~~~~l~~--~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~---------------------------------  263 (517)
T PRK13355        219 ELINLSMSALLD--DGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDE---------------------------------  263 (517)
T ss_pred             HHHHHHHHHhCC--CCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCc---------------------------------
Confidence            567777777765  999999999999887776666666655443210                                 


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~  245 (514)
                                                                                                  .+++
T Consensus       264 ----------------------------------------------------------------------------~~~~  267 (517)
T PRK13355        264 ----------------------------------------------------------------------------QSEW  267 (517)
T ss_pred             ----------------------------------------------------------------------------ccCC
Confidence                                                                                        1122


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCce
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~d  321 (514)
                      ..+.+.+++..+++++++++++|+||||.+++   +++|.++|++|++++|+||+|....+ +....++.....  ....
T Consensus       268 ~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~--~~~v  345 (517)
T PRK13355        268 YPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP--DLFC  345 (517)
T ss_pred             CCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC--CCeE
Confidence            22333444444567899999999999999999   89999999999999999999994433 222222222211  1235


Q ss_pred             EEEcCCcccccCCC---eEEEec--HHH----HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh--hchHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGNIG---GYIVGT--KNF----IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS--SQEGVELRAKHQD  390 (514)
Q Consensus       322 i~~~S~sK~lg~~G---G~l~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~  390 (514)
                      ++++||||.++.+|   ||++.+  +++    ++.+.... ..  ..+.+.+.+.++.++|+...  ...+.+. .++.+
T Consensus       346 i~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~-~~--~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~  421 (517)
T PRK13355        346 VTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLA-NM--RLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYE  421 (517)
T ss_pred             EEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHh-cC--cCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHH
Confidence            66799999998878   999853  433    33343222 11  22466777778877775211  1223332 34455


Q ss_pred             HHHHHHHHHHhC-CCccccCCCcEEE-EEeCCC----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        391 IVAYLRNELIQI-GFPVEHTPSHIIP-IKIGNP----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       391 ~~~~l~~~L~~~-g~~~~~~~~~~~~-i~l~~~----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      +++++.+.|+++ |+.+..+.++|+. ++++..    .+..+++..+++++||.+.|+..|. ..+++++|+++.  .++
T Consensus       422 ~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~-~~~~~~~Ris~~--~~~  498 (517)
T PRK13355        422 QRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFN-WDKPDHFRVVYL--PRL  498 (517)
T ss_pred             HHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhC-CCCcCEEEEEeC--CCH
Confidence            678899999888 8888788877544 466532    2355677666679999999998754 235789999996  688


Q ss_pred             HHHHHHHHHHHHHHHHc
Q psy16848        465 EMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~  481 (514)
                      +++++++++|+++++..
T Consensus       499 ~~l~~a~~rl~~~~~~~  515 (517)
T PRK13355        499 EDLEDAMDRLADFFSYY  515 (517)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998754

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=1.8e-25  Score=227.01  Aligned_cols=321  Identities=15%  Similarity=0.119  Sum_probs=220.5

Q ss_pred             hHHHHHHHHHHHhCCCCCCcCccc-----CcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEec
Q psy16848         33 GGRKCLGEALEKFGTGAGGTRNIS-----GNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISD  107 (514)
Q Consensus        33 ~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~  107 (514)
                      .+.+++.+++..|+.+++++....     ...+...++++.+++++|.+++++++++++++..++.++..  +||.|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~--~gd~Vl~~   89 (361)
T cd06452          12 RLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCE--KGDWVVVD   89 (361)
T ss_pred             CCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcC--CCCEEEEc
Confidence            455667777777775555443322     22467889999999999998888888888899989988866  99999999


Q ss_pred             CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848        108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       108 ~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .+.|.+...+++..|++++.++.+...                     .|                              
T Consensus        90 ~~~~~~~~~~~~~~g~~~~~v~~~~~~---------------------~~------------------------------  118 (361)
T cd06452          90 GLAHYTSYVAAERAGLNVREVPNTGHP---------------------EY------------------------------  118 (361)
T ss_pred             CCcchHHHHHHHhcCCEEEEEecCCCC---------------------Cc------------------------------
Confidence            999999887777777776655431000                     00                              


Q ss_pred             ccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc---CCCceEEE
Q psy16848        188 VGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD---VKIPKLVA  264 (514)
Q Consensus       188 ~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~---~~~~~~vv  264 (514)
                                                                            ..|.+.+++.+++..   .+++++++
T Consensus       119 ------------------------------------------------------~~d~~~l~~~l~~~~~~~~~~~~lv~  144 (361)
T cd06452         119 ------------------------------------------------------HITPEGYAEVIEEVKDEFGKPPALAL  144 (361)
T ss_pred             ------------------------------------------------------ccCHHHHHHHHHHHhhccCCCceEEE
Confidence                                                                  014455555554322   13588999


Q ss_pred             EecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC--eEEEecH
Q psy16848        265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--GYIVGTK  342 (514)
Q Consensus       265 ~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--G~l~~~~  342 (514)
                      +++++||+|...++++|.++|+++|+++|+|++|+.|..        +......+.|++++|+||++++++  |++++++
T Consensus       145 l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~--------~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~  216 (361)
T cd06452         145 LTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM--------PVSGKELGADFIVGSGHKSMAASAPIGVLATTE  216 (361)
T ss_pred             EECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCc--------CCCHHHcCCCEEEecCCccccCCCCeEEEEECH
Confidence            999999999999999999999999999999999986543        112223367999999999997533  9999999


Q ss_pred             HHHHHHHhhcCceE------eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc---cCCCc
Q psy16848        343 NFIDTIRSYAAGFI------FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE---HTPSH  412 (514)
Q Consensus       343 ~~~~~l~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~  412 (514)
                      ++++.+......+.      ...+.+...+.++.++++... +.++ ...+..++.+++.+.|+++ |+.+.   .+..+
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~-~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n  294 (361)
T cd06452         217 EWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVK-ERVK-RWDEEVEKARWFVAELEKIEGIKQLGEKPKNHD  294 (361)
T ss_pred             HHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCc
Confidence            99998866543321      111222233444455555432 2222 2333345568899999998 88765   23445


Q ss_pred             EEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        413 IIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       413 ~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++.+..+.        .....++.+.|+ ++||.+..      +...+++|++.. ..++++++.++++|+++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~------~~~~~~~ri~~~-g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         295 LMFFETPSFDEIAKKHKRRGYFLYSELK-KRGIHGIK------PGLTRYFKLSTY-GLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             eEEEEcCCcchhhhhccccchhHHHHHH-HcCceEEc------CCCceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence            66666541        111236888995 88999531      122458899883 469999999999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.95  E-value=1.6e-25  Score=229.08  Aligned_cols=218  Identities=21%  Similarity=0.194  Sum_probs=160.7

Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +++..+++++++++++++||||.+.|+++|.++|+++|+++++|++++.|..        +......++|++++|+||++
T Consensus       133 l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~--------~~~~~~~~~D~~~~s~~K~~  204 (382)
T TIGR03403       133 VREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI--------PVDVQKAGVDFLSFSAHKFH  204 (382)
T ss_pred             HHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC--------ccCccccCCCEEEEcchhhC
Confidence            3333345689999999999999999999999999999999999999986643        12222347899999999998


Q ss_pred             cCCC-eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CC
Q psy16848        332 GNIG-GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GF  404 (514)
Q Consensus       332 g~~G-G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  404 (514)
                      |++| |+++.++...  +.+...+.     ....+.+...+.++..+++... +.++...++.+++++++.+.|+++ ++
T Consensus       205 gp~G~g~l~vr~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~~  281 (382)
T TIGR03403       205 GPKGVGGLYIRKGVE--LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLAN-EYLDFEKSHVRRLRDRLEDALLELPDV  281 (382)
T ss_pred             CCCceEEEEECCCCC--CCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            9888 8887665431  11111000     0123466677777778887653 356778889999999999999886 67


Q ss_pred             ccccCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEEeCCCCCH
Q psy16848        405 PVEHTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLAPTPFHTR  464 (514)
Q Consensus       405 ~~~~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~~~~~~t~  464 (514)
                      .+..+.    .+++.+.++. .+..++...| .++||.++.|..|....                ..+.+|++++..+|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~  359 (382)
T TIGR03403       282 FVVGDREHRVPNTILISIKG-VEGEAMLWDL-NKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTE  359 (382)
T ss_pred             EEECCCCCCcCCEEEEEeCC-CCHHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCH
Confidence            666542    3366666653 3467788887 59999999876553110                136899999999999


Q ss_pred             HHHHHHHHHHHHHHHHcC
Q psy16848        465 EMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~~  482 (514)
                      +|+|+++++|++++++++
T Consensus       360 ~did~~~~~l~~~~~~~~  377 (382)
T TIGR03403       360 EEIDYTIEVFKKAVQRLR  377 (382)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999987764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.95  E-value=2.6e-25  Score=228.57  Aligned_cols=360  Identities=19%  Similarity=0.153  Sum_probs=237.7

Q ss_pred             CCceeeeccc---CCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSS---VQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~---~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+|+.+   +..+  +||++.+++.+|+++.......    .-..+...++.+++++.+.  .++++|++||++|+
T Consensus        42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAv  117 (429)
T PRK06173         42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFG----GFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAV  117 (429)
T ss_pred             CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcccc----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHH
Confidence            5667777743   2233  3899999999999985432111    1124677889999999873  56789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++.....                                        .-.+..+++++++.+++.||..  +.+.  
T Consensus       118 e~AlklAr~~----------------------------------------~~~~g~~~r~~ii~~~~~yHG~t~~a~s--  155 (429)
T PRK06173        118 EVAMKMALQY----------------------------------------QQAKGEVQRTKFATIRSGYHGDTWHAMS--  155 (429)
T ss_pred             HHHHHHHHHH----------------------------------------HHHhCCCCCcEEEEECCCcCCcchhhhc--
Confidence            9999654320                                        0001124567788888888621  1111  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                .++        ..................+|.++..    .+   ..+...+++
T Consensus       156 --------------------------~~~--------~~~~~~~~~~~~~~~~~~~~~p~~~----~~---~~~~~~~l~  194 (429)
T PRK06173        156 --------------------------VCD--------PVTGMHGLFNHSLPVQYFLPQPSIK----FG---EEWNDEAIE  194 (429)
T ss_pred             --------------------------cCC--------CchhhhhcccccCCCCeEeCCCCcc----cc---hhHHHHHHH
Confidence                                      000        0000000000000000001111000    00   000112355


Q ss_pred             HHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCccCc
Q psy16848        247 HLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLHNM  320 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~~~  320 (514)
                      .+++.+++. .+++++|++++. ++..|...+    +++|+++|++||+++|+||+++ | +|+.|.++ .+..++  .+
T Consensus       195 ~l~~~i~~~-~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv--~P  269 (429)
T PRK06173        195 PLQDLLEQK-GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIAT-G-FGRTGKLFALEHAGV--VP  269 (429)
T ss_pred             HHHHHHHhC-CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhc-C-CCcCCcchHHHhcCC--CC
Confidence            566777543 357999999996 999898865    8999999999999999999995 5 36655554 344554  78


Q ss_pred             eEEEcCCcccccC---CCeEEEecHHHHHHHHhhc-C--ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYA-A--GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       321 di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                      |++  +++|++++   +.+.++.++++.+.+.... .  .++.++..+++.++++.++|+.+.++.   .+++++++.++
T Consensus       270 Div--~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~---~~~~~~~~g~~  344 (429)
T PRK06173        270 DIM--CIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESP---WQQNIQRIEAQ  344 (429)
T ss_pred             CEE--EeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence            999  69999964   1266778888888775321 1  122234688999999999999886655   68888999999


Q ss_pred             HHHHHHhC-CCccc---cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        395 LRNELIQI-GFPVE---HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       395 l~~~L~~~-g~~~~---~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      +.+.|+++ +++.+   ...|.++.+.+.+......+.+.|+ ++||.+.+.        .+.+|+.++..+|++|++++
T Consensus       345 l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~-e~Gi~v~~~--------g~~l~~~Ppl~it~~ei~~~  415 (429)
T PRK06173        345 LKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFV-EHGIWVRPF--------GKLVYIMPPFIISPDELSQL  415 (429)
T ss_pred             HHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHH-HCCeEEEec--------CCEEEEeCCccCCHHHHHHH
Confidence            99988865 44433   3467788888876545678888886 899998642        24899999999999999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      +++|++++.+.
T Consensus       416 ~~~l~~~l~~~  426 (429)
T PRK06173        416 TSGLLRVLKQE  426 (429)
T ss_pred             HHHHHHHHHHH
Confidence            99999998763

>PRK06855 aminotransferase; Validated

Probab=99.95  E-value=2.9e-25  Score=230.12  Aligned_cols=228  Identities=15%  Similarity=0.173  Sum_probs=161.0

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccC
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHN  319 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~  319 (514)
                      |++.+++.+++  .++++++++++||||||.+++   +++|.++|++||+++|+||+|....+ +....++.....  ..
T Consensus       158 d~~~l~~~~~~--~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~--~~  233 (433)
T PRK06855        158 DLDDLENKVKY--NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG--DV  233 (433)
T ss_pred             CHHHHHHHHhc--CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC--cC
Confidence            44555555542  134788999999999999999   78889999999999999999994433 222222222211  12


Q ss_pred             ceEEEcCCcccccCCC---eEEEec-----HH---HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHHHHHH
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGT-----KN---FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVELRAK  387 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~-----~~---~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~  387 (514)
                      ..++++||||.++.+|   ||++++     +.   +++.+..... .  ....+.+.+.++..+++... +.++++.++.
T Consensus       234 ~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~  310 (433)
T PRK06855        234 PGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM-I--EVCSTTLPQMAIPRIMSHPEYKNYLKERNKR  310 (433)
T ss_pred             CeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc-c--ccCCChHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence            4699999999998668   999873     22   2333322221 1  22456778888877775321 3467788899


Q ss_pred             HHHHHHHHHHHHHhC-CCccccCCCc-EEEEEeCCCc---------------------------cHHHHHHHHHHhCCeE
Q psy16848        388 HQDIVAYLRNELIQI-GFPVEHTPSH-IIPIKIGNPA---------------------------LNTKICDMLLKEKGHY  438 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~i~l~~~~---------------------------~~~~~~~~Ll~~~GI~  438 (514)
                      ++++++.+.+.|++. ++.+..+.++ ++++.+++..                           +..+++..+++++||.
T Consensus       311 ~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~  390 (433)
T PRK06855        311 YEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGIC  390 (433)
T ss_pred             HHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEE
Confidence            999999999999886 7666667665 6677776531                           2456777766789999


Q ss_pred             EecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       439 v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.|+..+.. . ...+|++++. .+++++++.+++|++++++.
T Consensus       391 v~PG~~F~~-~-~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~  430 (433)
T PRK06855        391 VVPLSSFCT-E-LNGFRVTLLE-RDEEKFEWIYQTLAEKIEEY  430 (433)
T ss_pred             EecCCcCCC-C-CCceEEEECC-CcHHHHHHHHHHHHHHHHHH
Confidence            999997542 2 3469999984 57899999999999998753

>PRK06105 aminotransferase; Provisional

Probab=99.95  E-value=2.5e-25  Score=230.88  Aligned_cols=218  Identities=20%  Similarity=0.235  Sum_probs=166.5

Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      +.+++.+.+...+++++|+++++++..|...+    +++|+++|++||+++|+||+++ +|..|+.+ + .+.+++  .|
T Consensus       205 ~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f-~-~~~~~v--~P  280 (460)
T PRK06105        205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMF-G-CETFGI--KP  280 (460)
T ss_pred             HHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhh-h-HHhcCC--CC
Confidence            45566665443457899999999999998877    8999999999999999999996 77776532 1 234554  79


Q ss_pred             eEEEcCCcccccC---CCeEEEecHHHHHHHHhhcC-----ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAA-----GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       321 di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      |++  +++|.+++   +.|++++++++.+.+.....     .+.++++.+++.++++.++|+.+.+++   ..++.+++.
T Consensus       281 Di~--~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~---l~~~v~~~g  355 (460)
T PRK06105        281 DIL--VMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERD---LVGNAAERG  355 (460)
T ss_pred             Cee--eeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHH
Confidence            999  99999975   24888899998887764211     123466899999999999999997655   788888888


Q ss_pred             HHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        393 AYLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       393 ~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      +++++.|+++ ..++   +...|.++.+++....           ....+...++ ++||.+.+.        .+.+|++
T Consensus       356 ~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~-~~Gvl~~~~--------g~~i~l~  426 (460)
T PRK06105        356 ARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAH-EHGVISRAM--------GDTLAFC  426 (460)
T ss_pred             HHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHH-HCCeEEEec--------CCEEEEE
Confidence            9988888776 2322   2345667777763210           1346777785 899999642        2489999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++..+|++|++++++++.++++++
T Consensus       427 Ppl~it~~eid~~~~~l~~~l~~~  450 (460)
T PRK06105        427 PPLIITAAQVDEMVDRFGRALDDV  450 (460)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875

>PRK07480 putative aminotransferase; Validated

Probab=99.95  E-value=2.3e-25  Score=230.76  Aligned_cols=364  Identities=15%  Similarity=0.098  Sum_probs=228.5

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   .-++  ||++.+++.+|+++......   ......+...++.+++++.+.  .++++|++||++|+
T Consensus        48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~---~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~  124 (456)
T PRK07480         48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNT---FFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEAN  124 (456)
T ss_pred             CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc---ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHH
Confidence            55566666432   1223  79999999999998543211   111235778899999999884  46789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHH-hcccCCCcEEEeecccccc--CCccc
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE-NMDVKIPKLVAFETVHSMT--GAICP  165 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~  165 (514)
                      +.|++.....                                         .. +..+++++++.+++.||..  +.+..
T Consensus       125 e~AlklAr~~-----------------------------------------~~~~g~~~r~~ii~~~~~yHG~tl~a~s~  163 (456)
T PRK07480        125 DTVLRMVRHY-----------------------------------------WALKGKPQKKVIISRKNGYHGSTVAGASL  163 (456)
T ss_pred             HHHHHHHHHH-----------------------------------------HHhcCCCCCcEEEEECCCcCCcchhhhhc
Confidence            9999654320                                         00 0113456777777777621  10000


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC-
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND-  244 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d-  244 (514)
                                                  ++..         ........+.....-++.++..... .+..  ..+.++ 
T Consensus       164 ----------------------------~g~~---------~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~--~~~~~~~  203 (456)
T PRK07480        164 ----------------------------GGMK---------YMHEQGDLPIPGIVHIDQPYWFGEG-GDMT--PEEFGLA  203 (456)
T ss_pred             ----------------------------cCCh---------hhhcccCCCCCCCeecCCCcccccc-cCCC--hHHHHHH
Confidence                                        0000         0000000000000000000000000 0000  000111 


Q ss_pred             -hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        245 -VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       245 -~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                       .+.+++.+.+...+++++|++++++...|...+    +++|+++|++||+++|+||+++ +|..|+.+  ..+.+++  
T Consensus       204 ~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~--a~~~~gv--  279 (456)
T PRK07480        204 AARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWF--GSQHFGI--  279 (456)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh--hhhhcCC--
Confidence             244555555444567999999999999999877    8999999999999999999997 66665432  2234554  


Q ss_pred             CceEEEcCCcccccC---CCeEEEecHHHHHHHHh--hcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH-HHHH
Q psy16848        319 NMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRS--YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH-QDIV  392 (514)
Q Consensus       319 ~~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~-~~~~  392 (514)
                      .||++  +++|.+++   +-|.+++++++.+.+..  .....+.+++.+++.++++.++|+.+.++.   +.++. +++.
T Consensus       280 ~PDiv--~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~~g  354 (456)
T PRK07480        280 KPDLM--TIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEG---IVERVRDDTG  354 (456)
T ss_pred             CCCee--eeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence            79999  99999976   12778888888887732  111122355889999999999999987655   66677 4777


Q ss_pred             HHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-------c----HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        393 AYLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-------L----NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       393 ~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-------~----~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      +++.+.|+++ ..++   +...|.++.+++....       .    ...+.+.++ ++||.+.+.        .+.+|++
T Consensus       355 ~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~--------~~~l~~~  425 (456)
T PRK07480        355 PYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCF-ANGLIMRAV--------GDRMIIS  425 (456)
T ss_pred             HHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHH-HCCcEEeec--------CCEEEEE
Confidence            7777777664 2222   2345668788773210       0    235666775 899998631        2479999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++..+|++|+|+++++++++++++
T Consensus       426 Ppl~it~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        426 PPLVITHAEIDELVEKARKALDAT  449 (456)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998875

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=2.1e-25  Score=230.91  Aligned_cols=206  Identities=24%  Similarity=0.383  Sum_probs=158.0

Q ss_pred             CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCccCceEEEcCCcccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~~~di~~~S~sK~l  331 (514)
                      .+++++|++++++...|.+.|    +++|+++|++||+++|+||+++ | +|+.|..+ .+..++  .+|++  +++|++
T Consensus       220 ~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv--~PDiv--~~gK~l  293 (457)
T PRK05639        220 PDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-G-IGRTGKWFASEWFEV--KPDLI--IFGKGV  293 (457)
T ss_pred             CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcCchHHHHHhcCC--CCCEE--Eechhh
Confidence            467999999999999998776    8999999999999999999999 4 34444332 244555  79999  699999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV  406 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  406 (514)
                      ++ |   |++++++++.+ ...  ....++++.++..++++.++|+.+.++.   ..++.+++.+++++.|+++  +.++
T Consensus       294 ~g-G~pi~av~~~~~i~~-~~~--~~~~~T~~g~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~  366 (457)
T PRK05639        294 AS-GMGLSGVIGRKELMD-LTS--GSALLTPAANPVISAAAEATLEIIEEEN---LLKNALKVGEFIKKRLLEMKESFEV  366 (457)
T ss_pred             cC-CCcceeEEehHHHHh-hcC--CCcccCCCcCHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            75 3   88889998887 322  1223466789999999999999886655   6777788888888888774  3333


Q ss_pred             ---ccCCCcEEEEEeCCC------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        407 ---EHTPSHIIPIKIGNP------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       407 ---~~~~~~~~~i~l~~~------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                         +...|.++.+.+...      .....+.+.++ ++|+.+.+.     ....+.+|+.++..+|++|+|+++++++++
T Consensus       367 ~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~-----g~~~~~lr~~Ppl~it~~~id~~~~~l~~~  440 (457)
T PRK05639        367 IGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAF-ELGLILPSY-----GMFGNVIRITPPLVITKEIAEKGLEIMERA  440 (457)
T ss_pred             EEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCCeEEeec-----CCCCCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence               344666777776321      12456778886 899999643     122468999999999999999999999999


Q ss_pred             HHHc
Q psy16848        478 WKSL  481 (514)
Q Consensus       478 l~~~  481 (514)
                      ++++
T Consensus       441 l~~~  444 (457)
T PRK05639        441 IKDA  444 (457)
T ss_pred             HHHH
Confidence            8765

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.95  E-value=1.3e-25  Score=229.10  Aligned_cols=322  Identities=20%  Similarity=0.256  Sum_probs=227.9

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCc--CcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhhccc-cCCCceE
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGT--RNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFTLGK-MIPGLHY  104 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~l~~-~~~gd~v  104 (514)
                      .+.+.+++.+.++.+...+.+.  ...........++++.+++++|.+   +.++++|+|+++..++.++.. ..+||.|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~v   91 (373)
T cd06453          12 PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEI   91 (373)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEE
Confidence            4678888888887654322211  112223566778999999999866   456677778888888877753 1279999


Q ss_pred             EecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeec
Q psy16848        105 ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE  184 (514)
Q Consensus       105 ~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (514)
                      +++.+.|.+....+..                                                                
T Consensus        92 l~~~~~~~~~~~~~~~----------------------------------------------------------------  107 (373)
T cd06453          92 VTSVMEHHSNIVPWQQ----------------------------------------------------------------  107 (373)
T ss_pred             EECcchhHHHHHHHHH----------------------------------------------------------------
Confidence            9999999886532110                                                                


Q ss_pred             cccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-----ChhHHHHHHhhccCCC
Q psy16848        185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-----DVNHLTQVLENMDVKI  259 (514)
Q Consensus       185 ~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~~  259 (514)
                                                                  .....|++++.++.+     |.+.+++.+    .++
T Consensus       108 --------------------------------------------~~~~~g~~~~~v~~~~~~~~d~~~l~~~l----~~~  139 (373)
T cd06453         108 --------------------------------------------LAERTGAKLKVVPVDDDGQLDLEALEKLL----TER  139 (373)
T ss_pred             --------------------------------------------HHhhcCcEEEEeecCCCCCcCHHHHHHHh----cCC
Confidence                                                        011123333333311     344444444    346


Q ss_pred             ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEE
Q psy16848        260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYI  338 (514)
Q Consensus       260 ~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l  338 (514)
                      ++++++++++||+|...|+++|.++|+++|+++++|++|+.+...     + +..  ..++|++++|++|++++.| |++
T Consensus       140 ~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~d~~~~s~~K~~~~~g~g~~  211 (373)
T cd06453         140 TKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMP-----V-DVQ--DLGCDFLAFSGHKMLGPTGIGVL  211 (373)
T ss_pred             ceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCcee-----e-ecc--ccCCCEEEeccccccCCCCcEEE
Confidence            899999999999999999999999999999999999999865431     1 111  2368999999999998766 999


Q ss_pred             EecHHHHHHHHhhcCce------------------Eec-cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        339 VGTKNFIDTIRSYAAGF------------------IFT-TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       339 ~~~~~~~~~l~~~~~~~------------------~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      ++++++++.+.....+.                  .+. .+.+.....++.++++.+.+.+.++++++.+++++++.+.|
T Consensus       212 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l  291 (373)
T cd06453         212 YGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL  291 (373)
T ss_pred             EEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            99999888776543211                  011 13445556677777887776777888999999999999999


Q ss_pred             HhC-CCccccC---CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeCCCCCHHHHHHH
Q psy16848        400 IQI-GFPVEHT---PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       400 ~~~-g~~~~~~---~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      +++ ++.+..+   .++++.+.++. .+..++.+.|. ++||.+.++..|..+     ...+++|++++..+|++|+|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~-~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~  369 (373)
T cd06453         292 SEIPGVRVYGDAEDRAGVVSFNLEG-IHPHDVATILD-QYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDAL  369 (373)
T ss_pred             hcCCCeEEeCCccccCCeEEEEECC-cCHHHHHHHHH-HCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHH
Confidence            988 6666532   35577888764 35678889985 899999877654321     1256999999999999999999


Q ss_pred             HHHH
Q psy16848        471 VTDL  474 (514)
Q Consensus       471 ~~~l  474 (514)
                      +++|
T Consensus       370 ~~~l  373 (373)
T cd06453         370 VEAL  373 (373)
T ss_pred             HhhC
Confidence            9864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK05839 hypothetical protein; Provisional

Probab=99.95  E-value=3.1e-25  Score=225.94  Aligned_cols=334  Identities=13%  Similarity=0.079  Sum_probs=222.9

Q ss_pred             CceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc-ccc
Q psy16848         17 NRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA-NDS   90 (514)
Q Consensus        17 g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a-~~~   90 (514)
                      |..++||..+..  -..+.+.+++.+....    ...+....|..++.+.+++.+.+.+|   .++.|++++|++. +..
T Consensus        23 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~----~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~   98 (374)
T PRK05839         23 EYKGLDLTIGEPQFETPKFIQDALKNNAHL----LNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN   98 (374)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHhhc----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence            668999975442  2345666666554432    12223334556777777777777766   2345777777664 444


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..-.+||.|+++.++|......++..|++++.++....                     +.|             
T Consensus        99 ~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~---------------------~~~-------------  144 (374)
T PRK05839         99 FPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKE---------------------NDF-------------  144 (374)
T ss_pred             HHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccc---------------------cCC-------------
Confidence            4454431137999999999998888777777776665443100                     000             


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                               +.+..+.
T Consensus       145 -------------------------------------------------------------------------~~d~~~~  151 (374)
T PRK05839        145 -------------------------------------------------------------------------TPSLNEK  151 (374)
T ss_pred             -------------------------------------------------------------------------cCCcchh
Confidence                                                                                     0111111


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccC----CCccCceEE
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD----GQLHNMDII  323 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~----~~~~~~di~  323 (514)
                      .+     ++++++++++||||||.+++   +++|.++|+++|+++|+||+|.....+....++....    ....+..++
T Consensus       152 ~~-----~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~  226 (374)
T PRK05839        152 EL-----QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLV  226 (374)
T ss_pred             hh-----ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEE
Confidence            11     34789999999999999999   7888889999999999999999533222211111110    011257899


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++||||.++.+|   ||+++++++++.+.......  +...+.+.+.++..++.  .+.++++.++.++++++.+.+.| 
T Consensus       227 ~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l-  301 (374)
T PRK05839        227 INSISKRSSAPGLRSGFIAGDASILKKYKAYRTYL--GCASPLPLQKAAAVAWL--DDEHAEFFRNIYAKNLKLAREIL-  301 (374)
T ss_pred             EeccccccCCccceeEEEecCHHHHHHHHHHHhhc--CCCCChHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHhc-
Confidence            999999998878   99999999999887664433  22456666766666664  24566777888888888777655 


Q ss_pred             hCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       401 ~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                        ++. .++.+.++++++++   ..++++.|++++||.+.|+..+..+ .+.+++|++++  .+++++++++++|+++++
T Consensus       302 --~~~-~p~gg~fi~~~~~~---~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        302 --GIT-IPPATFYVWLPVDN---DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--YDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             --CCC-CCCeeEEEEEeCCC---hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence              333 33445577788763   5688888875699999998764432 23689999997  468999999999998864

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.95  E-value=4e-25  Score=228.42  Aligned_cols=366  Identities=18%  Similarity=0.175  Sum_probs=232.1

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   ..+|  ||++.+++.+++++......   .. -..+...++.+++++++.  .++++|++||++|+
T Consensus        47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~---~~-~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAv  122 (445)
T PRK09221         47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPA---FQ-MGHPLAFELAERLAELAPGGLDHVFFTNSGSESV  122 (445)
T ss_pred             CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccc---cc-cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            56677777432   2233  79999999999998543221   11 124667889999999873  46789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++......                                        -.+....++++|.+++.||..  |.+.  
T Consensus       123 e~AlklAr~~~----------------------------------------~~~g~~~r~~ii~~~~~yHG~t~gals--  160 (445)
T PRK09221        123 DTALKIALAYH----------------------------------------RARGQGTRTRLIGRERGYHGVGFGGIS--  160 (445)
T ss_pred             HHHHHHHHHHH----------------------------------------HhcCCCCCcEEEEECCCcCccchhhhc--
Confidence            99996543200                                        000112356778888888621  1111  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecch-HHHHhhCCCCEEEecCCCh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASM-IQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~-~~~~~~~g~~~~~v~~~d~  245 (514)
                                                ..+.         ..-......+.....-+|.++ .... ..+...........
T Consensus       161 --------------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  204 (445)
T PRK09221        161 --------------------------VGGI---------VNNRKMFGGLLPGVDHLPHTLDLPEN-AFSKGQPEHGAELA  204 (445)
T ss_pred             --------------------------cCCC---------hhhhhccCCCCCCCeEeCCCcccccc-ccCCChHHHHHHHH
Confidence                                      0000         000000000000000000000 0000 00000000000013


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      +.+++.++....+++++|+++++++..|...+    +++|+++|++||+++|+||+++ +|..|..+  ..+.+++  .+
T Consensus       205 ~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~--~~~~~gv--~P  280 (445)
T PRK09221        205 DDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAF--AAERFGV--TP  280 (445)
T ss_pred             HHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhh--HHHhcCC--CC
Confidence            45666666544467899999999999999988    9999999999999999999997 55554321  1234444  78


Q ss_pred             eEEEcCCcccccCC---CeEEEecHHHHHHHHhhcC-----ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAA-----GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       321 di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      |++  +++|.+++.   .|.+++++++.+.+.....     ...++++.+++.++++.++|+.+.++.   +.++.+++.
T Consensus       281 Di~--~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~---l~~~~~~~g  355 (445)
T PRK09221        281 DII--TFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREED---LFERAAELA  355 (445)
T ss_pred             CEE--EeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHH
Confidence            998  999999752   2778888888887753110     122355789999999999999886554   678899999


Q ss_pred             HHHHHHHHhC-CCcc---ccCCCcEEEEEeCCC-----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCC
Q psy16848        393 AYLRNELIQI-GFPV---EHTPSHIIPIKIGNP-----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT  463 (514)
Q Consensus       393 ~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~-----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t  463 (514)
                      +++++.|+++ +.+.   +...|.+..+.+...     .....+.+.++ ++||.+.+.        .+.+|++++..+|
T Consensus       356 ~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~--------~~~lr~~Ppl~~t  426 (445)
T PRK09221        356 PYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCF-EKGLLVRYT--------GDTIALSPPLIIE  426 (445)
T ss_pred             HHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHH-HCCeEEeec--------CCEEEEECCccCC
Confidence            9999988876 4332   233455666665321     12457788886 899998631        2589999999999


Q ss_pred             HHHHHHHHHHHHHHHHHc
Q psy16848        464 REMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~~  481 (514)
                      ++|+++++++|+++++++
T Consensus       427 ~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        427 KAQIDELVDALGDALRAV  444 (445)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998764

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=1.1e-25  Score=228.78  Aligned_cols=320  Identities=20%  Similarity=0.175  Sum_probs=222.9

Q ss_pred             CceeeecccC-CCCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccc-cccc
Q psy16848         17 NRVTCRLSSV-QYKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVA-NDST   91 (514)
Q Consensus        17 g~~~~d~~~~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a-~~~~   91 (514)
                      +..++|++.+ .+++ .|.+.+++.+.+.... .+       +. ....++++.++++++.+  ..+++++|+++ +..+
T Consensus        33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~y-------~~-~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~  103 (361)
T PRK00950         33 PESIIKLGSNENPLGPSPKAVEAIEKELSKIH-RY-------PE-PDAPELREALSKYTGVPVENIIVGGDGMDEVIDTL  103 (361)
T ss_pred             ccceEEccCCCCCCCCCHHHHHHHHHHHHhhc-CC-------CC-CCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHH
Confidence            4478999765 3444 6788888887766421 11       11 12378999999999864  34443777654 5556


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.+.|......++..|.+++.++..+                                       
T Consensus       104 ~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~---------------------------------------  142 (361)
T PRK00950        104 MRTFID--PGDEVIIPTPTFSYYEISAKAHGAKPVYAKREE---------------------------------------  142 (361)
T ss_pred             HHHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEeecCC---------------------------------------
Confidence            666655  999999999988776666666666555433100                                       


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                             +.                                             ..+.+.+++.
T Consensus       143 -----------------------~~---------------------------------------------~~~~~~l~~~  154 (361)
T PRK00950        143 -----------------------DF---------------------------------------------SLDVDSVLNA  154 (361)
T ss_pred             -----------------------CC---------------------------------------------CcCHHHHHHH
Confidence                                   00                                             0133444443


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +    +++++++++++|+||||.++|.+++.++|+++|+++|+||+|.... +...   ..... ..+..++++||||.+
T Consensus       155 ~----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~~~~---~~~~~-~~~~vi~~~S~SK~~  225 (361)
T PRK00950        155 I----TEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-EYDY---TPLAL-EYDNLIIGRTFSKVF  225 (361)
T ss_pred             h----ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-ccch---HHHHH-hcCCEEEEEeehHhh
Confidence            3    3457899999999999999999999999999999999999998332 2111   11111 124578999999999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH  408 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  408 (514)
                      |.+|   ||+++++++++.+......+    ..+.+.+.++..+++.  .+.+++.+++++++++++.+.|.   +.+.+
T Consensus       226 g~~GlRiG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l~---~~~~~  296 (361)
T PRK00950        226 GLAGLRIGYGFVPEWLIDYYMRAKTPF----SLTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNELP---FKVYP  296 (361)
T ss_pred             cCchhhcchhcCCHHHHHHHHHhcCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhcC---eeECC
Confidence            9778   99999999998887765443    3567777777777752  23456667777777777776665   44445


Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.++++++.++ ..+..++++.|. ++||.+.++..+. ..+++++|++++   +.+++++++++|++++
T Consensus       297 ~~~~~i~~~~~-~~~~~~~~~~l~-~~gv~v~~~~~f~-~~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        297 SEANFVLVDVT-PMTAKEFCEELL-KRGVIVRDCTSFR-GLGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             CcceEEEEECC-CCCHHHHHHHHH-HCCEEEeeCCccC-CCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence            56677888873 346789999996 8899999876532 234679999998   7889999999999875

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=1.6e-25  Score=234.39  Aligned_cols=314  Identities=12%  Similarity=0.092  Sum_probs=214.1

Q ss_pred             ccCcchHHHHHHHHHHhHcC------CCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhh-cCCCCeee
Q psy16848         55 ISGNSLFHEKLEEDVAKLHQ------KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIR-NSSAPKII  127 (514)
Q Consensus        55 ~~~~~~~~~~~~~~la~~~~------~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~-~~~~~~~~  127 (514)
                      ..|..++.+++.+.+.+.+|      .++.++++++++|+..++.+++.  |||.|+++.++|......++ ..|.+++.
T Consensus        93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~--pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~  170 (496)
T PLN02376         93 YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLAD--PGDVFLIPSPYYAAFDRDLRWRTGVEIIP  170 (496)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCC--CCCEEEECCCCccchHHHHHhhCCCEEEE
Confidence            34555666666666665544      22344444455678888888876  99999999999998876665 35666665


Q ss_pred             ccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhh
Q psy16848        128 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN  207 (514)
Q Consensus       128 ~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~  207 (514)
                      ++....+                                                            +.           
T Consensus       171 v~~~~~~------------------------------------------------------------~~-----------  179 (496)
T PLN02376        171 VPCSSSD------------------------------------------------------------NF-----------  179 (496)
T ss_pred             EeCCCCc------------------------------------------------------------cC-----------
Confidence            4431000                                                            00           


Q ss_pred             HHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCccccC---HHHHH
Q psy16848        208 MDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP---LKELC  282 (514)
Q Consensus       208 i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~---l~~l~  282 (514)
                                                        .-+.+.+++.+++..  +.+++++++++|+||||.+++   +++|.
T Consensus       180 ----------------------------------~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~  225 (496)
T PLN02376        180 ----------------------------------KLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLV  225 (496)
T ss_pred             ----------------------------------cCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHH
Confidence                                              013455555444322  346899999999999999999   78899


Q ss_pred             HHHHHcCCEEEEecccccccc-CCCCCCccccCC------CccCceEEEcCCcccccCCC---eEEEec-HHHHHHHHhh
Q psy16848        283 EVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDG------QLHNMDIISGTLGKAFGNIG---GYIVGT-KNFIDTIRSY  351 (514)
Q Consensus       283 ~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~------~~~~~di~~~S~sK~lg~~G---G~l~~~-~~~~~~l~~~  351 (514)
                      ++|++|++++|+||+|....+ +....++.....      ...+..+++.||||.+|.+|   ||++++ +.+.+.++..
T Consensus       226 ~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~  305 (496)
T PLN02376        226 RFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKM  305 (496)
T ss_pred             HHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHH
Confidence            999999999999999994433 322222221110      01123466889999999778   999985 5555555443


Q ss_pred             cCceEeccCCcHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-cEEEEEeCCCc------
Q psy16848        352 AAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS-HIIPIKIGNPA------  422 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~i~l~~~~------  422 (514)
                      . .+  . ..+.+.+.++...|+..  .+..+.+.+++++++++.+.+.|++.++.+..+.+ .++++.++...      
T Consensus       306 ~-~~--~-~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~  381 (496)
T PLN02376        306 S-SF--G-LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSF  381 (496)
T ss_pred             h-hc--C-CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCch
Confidence            3 22  2 35777777777777522  13345667888899999999999998888776665 57778876421      


Q ss_pred             -cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        423 -LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       423 -~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                       ...++.+.++++.||.+.||..+.. ..++++|++++ ..++++++.++++|++++++.
T Consensus       382 ~~e~~l~~~ll~~~gV~v~pGs~F~~-~~~g~~Ri~fa-~~~~~~l~~al~rl~~~l~~~  439 (496)
T PLN02376        382 ESEIELWHIIIDKVKLNVSPGSSFRC-TEPGWFRICFA-NMDDDTLHVALGRIQDFVSKN  439 (496)
T ss_pred             hHHHHHHHHHHHcCCEEEeCccccCC-CCCCEEEEEee-CCCHHHHHHHHHHHHHHHHHh
Confidence             2357888887567999999987543 24679999998 356799999999999998754

>PRK07046 aminotransferase; Validated

Probab=99.95  E-value=2.7e-25  Score=229.81  Aligned_cols=340  Identities=19%  Similarity=0.200  Sum_probs=231.7

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      +|+.|+||.+.   ..++  ||++.+++.+++++ +...+      ...+...++.+++++.++.+++.|++|||+|++.
T Consensus        73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~-~~~~~------~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~  145 (453)
T PRK07046         73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR-GLTTM------LPSEDAAWVGEELARRFGLPYWQVATTATDANRF  145 (453)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHHh-CCCCC------CCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHH
Confidence            56666666322   1223  79999999999997 22211      2347778899999999888889999999999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      |++.                                              ++..++|++++.|+|+||.-.+.       
T Consensus       146 Alrl----------------------------------------------AR~~TGr~~ii~~~g~YHG~~d~-------  172 (453)
T PRK07046        146 VLRW----------------------------------------------ARAVTGRPKILVFNGCYHGTVDD-------  172 (453)
T ss_pred             HHHH----------------------------------------------HHHhhCCCEEEEECCCCCCCcHH-------
Confidence            9943                                              33445678888888888621100       


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc-eeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE-VAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~-v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                         ...                     .+.... ...+. +..........+..++++|.+.++
T Consensus       173 -------------------~l~---------------------~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~nd~~~l~  211 (453)
T PRK07046        173 -------------------VFV---------------------DLVDGRPVQRPG-LLGQVHDLTATTRVVEFNDLAALE  211 (453)
T ss_pred             -------------------hHh---------------------hccCCCCCCCCC-CCCCCccccCceEeeCCCCHHHHH
Confidence                               000                     000000 00000 000000001234567788999999


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+.   .+++++|++++.+...|.+.+    +++|+++|++||+++|.||++++ ..|..+  ....+++  .+|++  
T Consensus       212 ~~l~---~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tf-r~g~Gg--~~~~~gv--~PDi~--  281 (453)
T PRK07046        212 AALA---DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTI-SSGPGG--YTRAHGL--EPDFL--  281 (453)
T ss_pred             HHhC---CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccC-ccCCcc--hhHHhCC--Cccce--
Confidence            8884   256899999999999898877    89999999999999999999983 233222  3344555  79999  


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhc-----C--ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYA-----A--GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~-----~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      +++|.+|+ |   |++++++++.+.+....     .  ....+++.+++.++++.++|+.+.++.   ..++..++.+++
T Consensus       282 t~gK~lgg-G~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~---~~~~~~~~g~~l  357 (453)
T PRK07046        282 VVGKPIAG-GVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEA---AYAHMLALAARL  357 (453)
T ss_pred             eehhhhcC-CCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHH
Confidence            89999986 5   88899999988876321     1  122355789999999999999886554   677777788888


Q ss_pred             HHHHHhC----CCcc-ccCCCcEEEEEeCCC--------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        396 RNELIQI----GFPV-EHTPSHIIPIKIGNP--------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       396 ~~~L~~~----g~~~-~~~~~~~~~i~l~~~--------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      .+.|+++    ++.. +...+.++.+.+...              .....+...++ ++||++.+.        .+.+++
T Consensus       358 ~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~--------~~~~~~  428 (453)
T PRK07046        358 AAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLL-NRGVLITPF--------HNMMLV  428 (453)
T ss_pred             HHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHH-HCCCEEecc--------cCcEEE
Confidence            7777653    4433 234556666665221              11235666775 899998642        135778


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++.  +|++|+++++++++++++++
T Consensus       429 ~p~--~t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        429 CPA--TTAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             eCC--CCHHHHHHHHHHHHHHHHHH
Confidence            775  89999999999999998765

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.95  E-value=3.9e-25  Score=227.02  Aligned_cols=306  Identities=16%  Similarity=0.130  Sum_probs=228.6

Q ss_pred             cchHHHHHHHHHHhHcCCCc---EEEEeccccccccchhhccccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCC
Q psy16848         58 NSLFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHND  132 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d  132 (514)
                      ..+.++++++++++++|.+.   .++.+|||.++..++..+.+  +||.|++..+.|.+..  ..++..|.+++.++.++
T Consensus        40 ~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~--~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~  117 (401)
T PLN02409         40 FPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS--PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPW  117 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC--CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCC
Confidence            35788899999999998642   46667788888888877765  9999999998886653  22333344433322110


Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHH
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  212 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~  212 (514)
                                                                                    +.                
T Consensus       118 --------------------------------------------------------------~~----------------  119 (401)
T PLN02409        118 --------------------------------------------------------------GQ----------------  119 (401)
T ss_pred             --------------------------------------------------------------CC----------------
Confidence                                                                          00                


Q ss_pred             hhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHH--HHHcCC
Q psy16848        213 GTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV--SHQHGA  290 (514)
Q Consensus       213 ~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l--~~~~gv  290 (514)
                                                   ..+.+.+++.+++...++++++++++++|+||.++|+++|.++  |+++|+
T Consensus       120 -----------------------------~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~  170 (401)
T PLN02409        120 -----------------------------GADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPA  170 (401)
T ss_pred             -----------------------------CCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCc
Confidence                                         0145566666654211368999999999999999999999999  999999


Q ss_pred             EEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHHHHHHHHhhcCc-eE-----------
Q psy16848        291 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFIDTIRSYAAG-FI-----------  356 (514)
Q Consensus       291 ~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~~l~~~~~~-~~-----------  356 (514)
                      ++|+|+++++|..        +.....++.|++++|.+|+++ +.| |+++.+++.++.+.+.... ..           
T Consensus       171 ~~vvD~v~s~g~~--------~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
T PLN02409        171 LLLVDGVSSIGAL--------DFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYK  242 (401)
T ss_pred             EEEEEcccccCCc--------cccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHh
Confidence            9999999986643        222213478999999999994 467 9999999988887653211 00           


Q ss_pred             ---e-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC----C-cEEEEEeCCCccHHHH
Q psy16848        357 ---F-TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP----S-HIIPIKIGNPALNTKI  427 (514)
Q Consensus       357 ---~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~-~~~~i~l~~~~~~~~~  427 (514)
                         + ..+.+...+.++.++++++.+.+.++++++.+++.+++.+.|+++|+.+..+.    . .+.++.++...+..++
T Consensus       243 ~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l  322 (401)
T PLN02409        243 LGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDSAEI  322 (401)
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCHHHH
Confidence               0 12455667888899999887778899999999999999999998887765431    2 2455777766677889


Q ss_pred             HHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        428 CDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       428 ~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      .+.|++++||.+..+..+   .....+|++...+++.+++.+++++|++++++++.
T Consensus       323 ~~~l~~~~~i~i~~G~~~---~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g~  375 (401)
T PLN02409        323 VKNAWKKYNLSLGLGLNK---VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVGY  375 (401)
T ss_pred             HHHHHHhCCEEEEcCCCc---ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            888877889999877652   23568999999999999999999999999998874

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.95  E-value=3.3e-25  Score=229.42  Aligned_cols=343  Identities=22%  Similarity=0.219  Sum_probs=232.9

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~~   89 (514)
                      +|+.|+|+.+.   ..++  ||+|.+++.+++++. ...+      ...+...++.+++++.+ +.+++.|++|||+|++
T Consensus        97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~-~~~~------~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e  169 (474)
T PLN02482         97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKG-TSFG------APCLLENVLAEMVIDAVPSVEMVRFVNSGTEACM  169 (474)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHhhC-CCCC------CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHH
Confidence            56666666432   2223  799999999999973 2211      13466778889998887 4678899999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .|++                                              +++..++|++++.|+|+||.-.+..     
T Consensus       170 ~Alk----------------------------------------------lAR~~tgr~~Ii~~~g~YHG~~~~~-----  198 (474)
T PLN02482        170 GVLR----------------------------------------------LARAYTGREKIIKFEGCYHGHADSF-----  198 (474)
T ss_pred             HHHH----------------------------------------------HHHHhcCCCEEEEECCccCCCcchh-----
Confidence            9984                                              3344466788888888887311100     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC-ceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP-EVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~-~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                           ....+.+..              .+-.+ ...+|.       .....+..++++|.+.+
T Consensus       199 ---------------------~~~~~~~~~--------------~~~~~~~~g~~~-------~~~~~~~~~~~nd~~~l  236 (474)
T PLN02482        199 ---------------------LVKAGSGVA--------------TLGLPDSPGVPK-------AATSATLTAPYNDLEAV  236 (474)
T ss_pred             ---------------------hhhcCCCcc--------------ccCCCCCCCCCC-------CCCCCeEEecCCChHHH
Confidence                                 000000000              00000 000000       00124566788999999


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di~  323 (514)
                      ++.+++. .+++++|+++++++..|.+.|    +++|+++|++||+++|+||+++ |+ .+. + +..+.+++  .+|++
T Consensus       237 ~~~l~~~-~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~-~-ga~~~~gv--~PDi~  310 (474)
T PLN02482        237 KKLFEAN-KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAY-G-GAQEYFGI--TPDLT  310 (474)
T ss_pred             HHHHHhC-CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCc-c-hHhHHhCC--CCCEE
Confidence            9998754 356899999999999998877    7899999999999999999997 43 332 1 23345555  78998


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                        +++|++|+ |   |.+++++++.+.+..... ....+++.+++.++++.++|+.+.++.   ..+++.++.+++++.|
T Consensus       311 --t~gK~lgg-G~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~---~~~~~~~~g~~l~~~L  384 (474)
T PLN02482        311 --TLGKVIGG-GLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPG---TYEYLDKITKKLIQGI  384 (474)
T ss_pred             --EecchhhC-CCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHH
Confidence              89999986 4   777899999988863221 122244689999999999999886544   7788888888888888


Q ss_pred             HhC----CCccc-cCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        400 IQI----GFPVE-HTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       400 ~~~----g~~~~-~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      +++    ++++. ...++++.+.+...             .....+.+.|+ ++||++.+..++.        + .++..
T Consensus       385 ~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~-~~Gv~~~~~~~~~--------~-~psl~  454 (474)
T PLN02482        385 LEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGML-EEGVYLAPSQFEA--------G-FTSLA  454 (474)
T ss_pred             HHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHH-HCCeEEeccCCCC--------C-cCCCC
Confidence            765    44543 23344666555321             12346778886 8999997643311        1 26677


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~  480 (514)
                      +|++|+|++++++++++++
T Consensus       455 ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        455 HTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999875

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.95  E-value=1.4e-25  Score=226.47  Aligned_cols=318  Identities=19%  Similarity=0.183  Sum_probs=224.6

Q ss_pred             ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecc-ccccccchh
Q psy16848         18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSC-YVANDSTLF   93 (514)
Q Consensus        18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sG-t~a~~~~l~   93 (514)
                      ..+|||..++  +..+|++.+++.+++... ..+       +... ..++++.++++++.+ +.+++++| ++++..++.
T Consensus        19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~-~~y-------~~~~-~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~   89 (346)
T TIGR01141        19 KEVIKLNSNENPFGPPPKAKEALRAEADKL-HRY-------PDPD-PAELKQALADYYGVDPEQILLGNGSDEIIELLIR   89 (346)
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHhHHHh-hcC-------CCCC-HHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHH
Confidence            4689997544  334788999999876532 111       1112 268999999999853 33445554 566767777


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      ++..  +||.|+++.+.|......++..|.+++.++..+ +                                       
T Consensus        90 ~l~~--~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~-~---------------------------------------  127 (346)
T TIGR01141        90 AFLE--PGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDE-D---------------------------------------  127 (346)
T ss_pred             HhcC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCC-C---------------------------------------
Confidence            7765  999999999988765544555555544332210 0                                       


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                         ...|.+.+++.  
T Consensus       128 -------------------------------------------------------------------~~~d~~~l~~~--  138 (346)
T TIGR01141       128 -------------------------------------------------------------------GQLDLEDILVA--  138 (346)
T ss_pred             -------------------------------------------------------------------CCCCHHHHHHh--
Confidence                                                                               00133444443  


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                        .+++++++++++++||||.+++++++.++|+.+  ++++|+|++|+.......   ..+... ....+++++|+||++
T Consensus       139 --~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~---~~~~~~-~~~~~i~~~S~sK~~  212 (346)
T TIGR01141       139 --IDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPS---TLPLLA-EYPNLIVLRTLSKAF  212 (346)
T ss_pred             --cCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCcc---HHHHHh-hCCCEEEEehhhHhh
Confidence              345689999999999999999999999999887  999999999982221111   111111 123578899999999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      |.+|   ||+++++++++.++.....+    +.+++.+.++.+.++..  .+..+.+++++++++++.+.|++. |+.+.
T Consensus       213 g~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  286 (346)
T TIGR01141       213 GLAGLRIGYAIANAEIIDALNKVRAPF----NLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEVY  286 (346)
T ss_pred             hchhhhceeeecCHHHHHHHHhccCCC----CCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEEC
Confidence            7767   99999999999887654333    45777777777777543  256778889999999999999988 87765


Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        408 HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       408 ~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      ++.+.++++.++.  +..++.+.|. ++||.+.++..+...  ++++|++++   ++++++++++.|+
T Consensus       287 ~~~g~~~~~~~~~--~~~~~~~~L~-~~gI~v~~g~~f~~~--~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       287 PSDANFVLIRFPR--DADALFEALL-EKGIIVRDLNSYPGL--PNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             CCcCCEEEEecCC--CHHHHHHHHH-HCCeEEEeCCCcCCC--CCeEEEecC---CHHHHHHHHHHhC
Confidence            5567788888775  5788999996 899999998754322  679999987   7999999998763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK06917 hypothetical protein; Provisional

Probab=99.95  E-value=3.3e-25  Score=229.23  Aligned_cols=373  Identities=17%  Similarity=0.103  Sum_probs=237.1

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.|+||.+.   .-++  ||+|.+++.+|+++...... +..   ..+...++.+++++.+.  .++++|++|||+|+
T Consensus        29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~-~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAv  104 (447)
T PRK06917         29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYR-SQF---TSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEAN  104 (447)
T ss_pred             CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccc-ccc---CCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHH
Confidence            56667776433   1223  89999999999998533211 111   24677889999999874  34678889999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++....             |                           .-.+..++|++++.++|.||..  +.+.  
T Consensus       105 e~AlklAr~-------------~---------------------------~~~rg~t~r~~ii~~~~~yHG~t~~als--  142 (447)
T PRK06917        105 ETAMKIAIQ-------------H---------------------------FQERGIQGKHKILSRWMSYHGITMGALS--  142 (447)
T ss_pred             HHHHHHHHH-------------H---------------------------HHhcCCCCCCEEEEECCCcCCccHHHHH--
Confidence            999965432             0                           0012234567888888888621  1110  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                ..+..         ........+......++.++.... ..+.....+..++.+
T Consensus       143 --------------------------~~~~~---------~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~  186 (447)
T PRK06917        143 --------------------------MSGHP---------LRRQRFVSLLEDYPTISAPYCYRC-PVQKVYPTCQLACAT  186 (447)
T ss_pred             --------------------------hcCCc---------cccccCCCCCCCCeEeCCCccccc-ccCCChHHHHHHHHH
Confidence                                      00000         000000000000000000000000 000111111123455


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCC-CccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc-cccCCCccC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSM-TGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI-GERDGQLHN  319 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~np-tG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~-~~~~~~~~~  319 (514)
                      .+++.+++...+++++|++++++.. .|.+.+    +++|+++|++||+++|.||+++ +|..|.   .+ .+.+++  .
T Consensus       187 ~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~---~~a~~~~gv--~  261 (447)
T PRK06917        187 ELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA---MFAMEHWGV--E  261 (447)
T ss_pred             HHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc---hhhHHhcCC--C
Confidence            6677776554567999999999875 456555    8999999999999999999998 444443   22 234454  7


Q ss_pred             ceEEEcCCcccccC---CCeEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        320 MDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       320 ~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                      +|++  +++|++++   +.|++++++++.+.+......  ...+++.+++.++++.++|+.+.++.   +.++++++.++
T Consensus       262 PDi~--~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~g~~  336 (447)
T PRK06917        262 PDIM--TLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHN---LPEKAAEKGEY  336 (447)
T ss_pred             CCEE--EeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence            9998  89999975   237888899988877643221  12255789999999999999886555   77888888888


Q ss_pred             HHHHHHhC--CCcc---ccCCCcEEEEEeCCC-----------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        395 LRNELIQI--GFPV---EHTPSHIIPIKIGNP-----------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       395 l~~~L~~~--g~~~---~~~~~~~~~i~l~~~-----------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      +++.|+++  ..+.   +...|.++.+++...           .....+...++ ++||.+.+..........+.+|+++
T Consensus       337 l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~~~g~~~~~i~l~P  415 (447)
T PRK06917        337 LIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAA-KNGLLLYPAVAGQDGKEGDAVIIAP  415 (447)
T ss_pred             HHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHH-hCCcEEEecccccCCCCCCEEEEEC
Confidence            88888775  2332   234566777776311           12456778886 8999997642211112246899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +..+|++|+++++++++++++++
T Consensus       416 pl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        416 PMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>PRK09105 putative aminotransferase; Provisional

Probab=99.95  E-value=5.4e-25  Score=223.56  Aligned_cols=315  Identities=13%  Similarity=0.152  Sum_probs=223.2

Q ss_pred             eeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc
Q psy16848         20 TCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        20 ~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l   95 (514)
                      +++++.  +.+..+|.+.+++.+.+...+      .  |+... ..++++.+++++|.+  +.++++++++++..++.++
T Consensus        45 ~i~l~~~~~~~~~~~~~~~a~~~~~~~~~------~--Y~~~~-~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l  115 (370)
T PRK09105         45 AVFLNANECPLGPSPAARDAAARSAALSG------R--YDLEL-EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF  115 (370)
T ss_pred             cEEecCCCCCCCCCHHHHHHHHHHHHHhc------C--CCCch-HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence            556643  334457889999888765421      1  22222 678889999998743  3444445566777888777


Q ss_pred             cccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848         96 GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus        96 ~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                      ..  +||.|+++.++|......++..|.+++.++..                                            
T Consensus       116 ~~--~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~--------------------------------------------  149 (370)
T PRK09105        116 TS--PTAGLVTADPTYEAGWRAADAQGAPVAKVPLR--------------------------------------------  149 (370)
T ss_pred             cC--CCCEEEEeCCChHHHHHHHHHcCCeEEEecCC--------------------------------------------
Confidence            65  99999999999998887777777766654331                                            


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  255 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~  255 (514)
                                                                                         .++..+.+.+.+.
T Consensus       150 -------------------------------------------------------------------~~~~~d~~~l~~~  162 (370)
T PRK09105        150 -------------------------------------------------------------------ADGAHDVKAMLAA  162 (370)
T ss_pred             -------------------------------------------------------------------CCCCCCHHHHHhc
Confidence                                                                               0111111222222


Q ss_pred             cCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                       .++++++++++|+||||.+++.+++.++++.  +++++|+||+|......   .+...... ..+..+++.||||.+|.
T Consensus       163 -~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~---~s~~~~~~-~~~~vi~~~SfSK~~g~  237 (370)
T PRK09105        163 -DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDA---PSVVDLVA-QRKDLIVLRTFSKLYGM  237 (370)
T ss_pred             -CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccC---cchHHHHh-hCCCEEEEecccHhhcC
Confidence             2457899999999999999998777777654  48999999999732111   11111111 12467889999999998


Q ss_pred             CC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Q psy16848        334 IG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP  410 (514)
Q Consensus       334 ~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  410 (514)
                      +|   ||+++++++++.+... .    ....+...+.++.++++.  ..++++.+++++++++++.+.|++.|+.+..+.
T Consensus       238 ~GlRiG~~v~~~~~i~~l~~~-~----~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~  310 (370)
T PRK09105        238 AGMRLGLAAARPDLLAKLARF-G----HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTPSQ  310 (370)
T ss_pred             CccceeeeecCHHHHHHHHhc-C----CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCC
Confidence            78   9999999999988765 2    224667777777777763  356677888999999999999999888877777


Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++++.+.++  .+..++++.|. ++||.+..  .+  +..++++|++++   +++++++++++|++++
T Consensus       311 ~~f~~~~~~--~~~~~l~~~L~-~~gI~v~~--~~--~~~~~~~Ris~~---~~~~~~~l~~al~~~~  368 (370)
T PRK09105        311 ANCFMVDVK--RPAKAVADAMA-KQGVFIGR--SW--PIWPNWVRVTVG---SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             CcEEEEeCC--CCHHHHHHHHH-HCCcEEec--CC--CCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            887777664  34678999996 78999832  21  223679999998   7899999999998865

>PRK07036 hypothetical protein; Provisional

Probab=99.95  E-value=4.8e-25  Score=228.97  Aligned_cols=218  Identities=22%  Similarity=0.260  Sum_probs=162.8

Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCce
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      .+++.+.....+++++|+++++++..|...+    +++|+++|++||+++|+||+++ +|+.|+.+ ++...+++  .||
T Consensus       208 ~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~~gv--~PD  284 (466)
T PRK07036        208 EFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFF-ASEAVFGI--QPD  284 (466)
T ss_pred             HHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhh-hhhhhcCC--CCC
Confidence            3445555444567999999999999999887    8999999999999999999997 77765422 12123454  799


Q ss_pred             EEEcCCcccccCC---CeEEEecHHHHHHHHhh---c--CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGNI---GGYIVGTKNFIDTIRSY---A--AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       322 i~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~---~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                      ++  +++|++++.   -|.+++++++.+.+...   .  ...+.+++.+++.++++.++|+.+.++.   +.++.+++.+
T Consensus       285 iv--t~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~---l~~~~~~~g~  359 (466)
T PRK07036        285 II--TFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREG---LCEHVREVGP  359 (466)
T ss_pred             EE--EEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence            99  899999761   27788899998877532   1  1122255789999999999999986555   7888888888


Q ss_pred             HHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        394 YLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       394 ~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      ++++.|+++ ..+.   +...|.++.+++.+..           ....+...++ ++||.+.+.        .+.+|+++
T Consensus       360 ~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~--------~~~~~l~P  430 (466)
T PRK07036        360 YFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQ-ERGLLVRPL--------EHLCVLSP  430 (466)
T ss_pred             HHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHH-HCCcEEeec--------CCEEEEeC
Confidence            888888765 3332   2345668888774211           1346777785 899998632        14689999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +..+|++|+++++++++++++++
T Consensus       431 pl~it~~~id~~~~~l~~al~~~  453 (466)
T PRK07036        431 PLIITRAQIDEIVAILRAAIEET  453 (466)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988765

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=3.8e-25  Score=221.69  Aligned_cols=262  Identities=19%  Similarity=0.172  Sum_probs=194.0

Q ss_pred             CceeeecCchhhHHHHHhhccCC-ceeeec----chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCC
Q psy16848        196 AGIGERDGQLHNMDIISGTLVNP-EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS  270 (514)
Q Consensus       196 ~g~~~~~G~~~~i~~~~~~l~~~-~v~~~~----~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~n  270 (514)
                      ..|+.++|++++++.++. ++++ +++++.    .|...+...|++++.++.++.+.+.+.+++   .+++++++++|||
T Consensus        58 ~~I~it~Gs~~~l~~~~~-~~~~~~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~~~~~~~~l~~---~~~k~v~l~nP~N  133 (332)
T PRK06425         58 IKVLIGPGLTHFIYRLLS-YINVGNIIIVEPNFNEYKGYAFTHGIRISALPFNLINNNPEILNN---YNFDLIFIVSPDN  133 (332)
T ss_pred             ceEEECCCHHHHHHHHHH-HhCCCcEEEeCCChHHHHHHHHHcCCeEEEEeCCcccCcHHHHhh---cCCCEEEEeCCCC
Confidence            347778899999999997 4666 566655    557778899999999996444444555543   3678999999999


Q ss_pred             CCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHH
Q psy16848        271 MTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNF  344 (514)
Q Consensus       271 ptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~  344 (514)
                      |||.+++   +++|.++|+++++++|+||+|....... ..+...... ..+..++++||||.+|.+|   ||+++++++
T Consensus       134 PTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~-~~~~~~~~~-~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~l  211 (332)
T PRK06425        134 PLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR-AEEDVLLNR-SYGNVIIGRSLTKILGIPSLRIGYIATDDYN  211 (332)
T ss_pred             CcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc-chhHHHHhc-cCCCEEEEeecHHhcCCchhhheeeecCHHH
Confidence            9999999   6888888999999999999999443221 111111111 2257899999999999768   999999999


Q ss_pred             HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc-cCCCcEEEEEeCCCcc
Q psy16848        345 IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE-HTPSHIIPIKIGNPAL  423 (514)
Q Consensus       345 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~l~~~~~  423 (514)
                      ++.+......+    +.+...+.++ ....  .....++.++.++++++++.+.|++.|+.+. ++.++++++.++   +
T Consensus       212 i~~l~~~~~~~----~~~~~~~~~l-~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~---~  281 (332)
T PRK06425        212 MKISRKITEPW----SVCDPAIDFI-RSID--LDYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIP---D  281 (332)
T ss_pred             HHHHHHcCCCC----ccCHHHHHHH-HHhh--hHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcC---C
Confidence            99888755433    2333332221 1111  1233456788899999999999999887765 466778888876   3


Q ss_pred             HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        424 NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       424 ~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ..++.+.|+ ++||.+.++..+. ..+++++|++++   +.+++++++++|++++
T Consensus       282 ~~~~~~~l~-~~gi~v~~~~~f~-~~~~~~iRis~~---~~~~~~~l~~al~~~~  331 (332)
T PRK06425        282 AHDFYSYLL-KNGILVRLLDDYE-CLGEQYIRIAIR---RRSFNIKLVNALRNFL  331 (332)
T ss_pred             HHHHHHHHH-HCCeEEEECCCCC-CCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence            678999996 7999999987643 233579999999   8999999999999764

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.95  E-value=3.4e-25  Score=229.76  Aligned_cols=218  Identities=22%  Similarity=0.292  Sum_probs=162.3

Q ss_pred             hhHHHHHHhhcc--CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCc
Q psy16848        245 VNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQL  317 (514)
Q Consensus       245 ~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~  317 (514)
                      .+.+++.+++..  .+++++|++++++...|.+.+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++ 
T Consensus       215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~--a~e~~gv-  291 (464)
T PRK06938        215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMF--AFEHAGI-  291 (464)
T ss_pred             HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHH--HHHhcCC-
Confidence            456667775432  246899999999999898876    8999999999999999999999 66665422  2234555 


Q ss_pred             cCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                       .||++  +++|.+|+ |   |++++++++ +.+....  ...+++.+++.++++.++|+.+.++.   +.++.+++.++
T Consensus       292 -~PDiv--~~gKglgg-G~PlsAv~~~~~~-~~~~~~~--~~~T~~gnpla~Aaa~a~L~~l~~~~---l~~~~~~~G~~  361 (464)
T PRK06938        292 -IPDVV--VLSKAIGG-SLPLAVVVYREWL-DTWQPGA--HAGTFRGNQMAMAAGSATLRYIKEHR---LAEHAAAMGER  361 (464)
T ss_pred             -CCCEE--EeeccccC-CCceEEEeehhHh-hccCCCC--CCCCCCcCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence             79999  89999986 5   777777764 5443222  22355789999999999999886554   67788888888


Q ss_pred             HHHHHHhC--CCcc---ccCCCcEEEEEeCCC--------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEE
Q psy16848        395 LRNELIQI--GFPV---EHTPSHIIPIKIGNP--------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIR  455 (514)
Q Consensus       395 l~~~L~~~--g~~~---~~~~~~~~~i~l~~~--------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iR  455 (514)
                      +.+.|+++  ..++   +...|.++.+++...              .....+...++ ++|+.+.+..     ...+.+|
T Consensus       362 l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g-----~~~~~l~  435 (464)
T PRK06938        362 LREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILELGG-----RHGSVVR  435 (464)
T ss_pred             HHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEeecC-----CCCCEEE
Confidence            88888775  2332   344677888877421              11345777886 8999986421     1246899


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        456 LAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       456 l~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.++..+|++|+++++++++++++++
T Consensus       436 ~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        436 FLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             EECCCccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998764

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.95  E-value=4.3e-25  Score=229.07  Aligned_cols=364  Identities=13%  Similarity=0.077  Sum_probs=234.0

Q ss_pred             CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.|+||.+.   ..+  +||+|.+++.+|+++.......    .-..+...++.+++++++.  .++++|++||++|+
T Consensus        45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAv  120 (466)
T PRK07030         45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILA----GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAI  120 (466)
T ss_pred             CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcccc----ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHH
Confidence            45555665332   112  3899999999999985432211    1124777889999999863  46788899999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++.....                                        .-.+..++++++|.+++.||..  +.+.  
T Consensus       121 e~AlKlAr~~----------------------------------------~~~~g~t~r~~ii~~~~~yHG~t~ga~s--  158 (466)
T PRK07030        121 EVALKMSFHY----------------------------------------WRNRGKPRKKRFVTLTNSYHGETLAAMS--  158 (466)
T ss_pred             HHHHHHHHHH----------------------------------------HHHhCCCCCcEEEEECCCcCcccHHHHh--
Confidence            9999654320                                        0001223466777787777621  1110  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                .++..         ........+......+|.+..... ..|........++++
T Consensus       159 --------------------------~~~~~---------~~~~~~~p~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~l~  202 (466)
T PRK07030        159 --------------------------VGDVA---------LFTETYKPLLLDTIKVPSPDCYLR-PEGMSWEEHSRRMFA  202 (466)
T ss_pred             --------------------------ccCCc---------cccccCCccCCCCEEcCCCCcccc-ccCCCHHHHHHHHHH
Confidence                                      00000         000000000000000110000000 001100001123455


Q ss_pred             HHHHHHhhccCCCceEEEEec-CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        247 HLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      .+++.+.+ ..+++++|++++ ++...|...+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++  .|
T Consensus       203 ~le~~~~~-~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~--a~~~~gv--~P  277 (466)
T PRK07030        203 HMEQTLAE-HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF--ACEQAGI--RP  277 (466)
T ss_pred             HHHHHHHh-CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch--HHHhcCC--CC
Confidence            66777763 345789999999 6888898776    8999999999999999999998 77766432  2244555  89


Q ss_pred             eEEEcCCcccccCCC----eEEEecHHHHHHHHhhc-----CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYA-----AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       321 di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      |++  +++|++++ |    |.+++++++.+.+....     .....+++.+++.++++.++|+.+.++.   +.++.+++
T Consensus       278 Div--~~gKgl~g-G~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~  351 (466)
T PRK07030        278 DFL--CLSKALTG-GYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDN---VIENNRAL  351 (466)
T ss_pred             CEE--eeehhccC-CcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence            999  89999976 4    77888999888774311     1122355789999999999999987665   77888888


Q ss_pred             HHHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        392 VAYLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       392 ~~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      .+++++.|+++ ..+.   +...|.++.+++....           ....+.+.++ ++|+.+.+.        .+.+|+
T Consensus       352 G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~--------g~~i~~  422 (466)
T PRK07030        352 ARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHAL-ERGALLRPL--------GSVVYF  422 (466)
T ss_pred             HHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHH-HCCeEEEec--------CCEEEE
Confidence            99998888776 2222   2345667777774211           1246777886 899998642        247999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .++..+|++|+++++++++++++++
T Consensus       423 ~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        423 LPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             ECCccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=3.5e-25  Score=229.54  Aligned_cols=350  Identities=14%  Similarity=0.106  Sum_probs=238.6

Q ss_pred             CCceeeecccCCC--C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQY--K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~~   89 (514)
                      +|+.|+||.+..+  +  +||+|.+++.+|+++..+..  +.+   ..+...+++++++++++  .++++|++||++|++
T Consensus        70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~--~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve  144 (459)
T PRK06082         70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP--RRF---TNETAIECAEKLTEIAGGELNRVLFAPGGTSAIG  144 (459)
T ss_pred             CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc--Ccc---CCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHH
Confidence            6788888865433  2  38999999999999865432  111   24778899999999985  357888899999999


Q ss_pred             cchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         90 STLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        90 ~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .|++.... .++...|.....+|.....++...+.....-..             ....|.+      ...+        
T Consensus       145 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~-------------~~~~~~~------~~~~--------  197 (459)
T PRK06082        145 MALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGM-------------GPLMAGV------ERIP--------  197 (459)
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCC-------------CCCCCCC------EEeC--------
Confidence            99976543 335567777888899888777766543211000             0000000      0000        


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-----
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-----  243 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-----  243 (514)
                                                                             .++          ....+.+     
T Consensus       198 -------------------------------------------------------~~~----------~~~~~~~~~~~~  212 (459)
T PRK06082        198 -------------------------------------------------------PAV----------SYRGAFPDADGS  212 (459)
T ss_pred             -------------------------------------------------------CCc----------ccccccCChhHH
Confidence                                                                   000          0000011     


Q ss_pred             ---ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCC
Q psy16848        244 ---DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQ  316 (514)
Q Consensus       244 ---d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~  316 (514)
                         ..+.+++.+++.  +++++|+++++++..+...|   +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++
T Consensus       213 ~~~~~~~l~~~i~~~--~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~f--a~e~~gv  288 (459)
T PRK06082        213 DVHYADYLEYVIEKE--GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWF--THQAYGI  288 (459)
T ss_pred             HHHHHHHHHHHHhcC--CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh--HhHhhCC
Confidence               124455666532  36899999999987544555   8999999999999999999999 44444321  1244555


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                        .+|++  +++|++++..   |.+++++++.+.... .... ++++.+++.++++.++|+.+.++.   ..++.+++.+
T Consensus       289 --~PDiv--~~gKgl~gG~~P~~av~~~~~i~~~~~~-~~~~-~T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~  359 (459)
T PRK06082        289 --EPDIL--CIGKGLGGGLVPIAAMITKDKYNTAAQI-SLGH-YTHEKSPLGCAAALATIEVIEQEG---LLEKVKADSQ  359 (459)
T ss_pred             --CCCEE--EecccccCCCCcceEEEEcHHHHhhccC-CCCC-CCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence              79999  7999998622   777778776643321 1111 366889999999999999886554   7888899999


Q ss_pred             HHHHHHHhC--CCcc---ccCCCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        394 YLRNELIQI--GFPV---EHTPSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       394 ~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      ++.+.|+++  ..++   +...|.++.+++...        .....+...++ ++|+.+.+.       +.+.+|++++.
T Consensus       360 ~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~-------~~~~i~~~Ppl  431 (459)
T PRK06082        360 FMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCL-NNGLSFKVS-------QGNVIQLSPPL  431 (459)
T ss_pred             HHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHH-hCCCEEEec-------CCCEEEEeCCC
Confidence            999888775  3333   344677888877421        11346777786 899998642       24689999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        461 FHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      .+|++|++++++++++++.++.+
T Consensus       432 ~it~~eid~~~~~l~~~l~~~~~  454 (459)
T PRK06082        432 IITREELTQALAILEEAIAKICQ  454 (459)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999987643

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=3.2e-25  Score=231.25  Aligned_cols=232  Identities=13%  Similarity=0.052  Sum_probs=167.6

Q ss_pred             hhHHHHHHhhc--cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccC----
Q psy16848        245 VNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERD----  314 (514)
Q Consensus       245 ~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~----  314 (514)
                      .+.+++.+++.  ...+++++++++|+||||.+++   +++|.++|++|++++|+||+|....+ +....++....    
T Consensus       175 ~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~  254 (468)
T PLN02450        175 ESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRK  254 (468)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcc
Confidence            34455555432  2346889999999999999999   78899999999999999999994332 22221221111    


Q ss_pred             --CC-ccCceEEEcCCcccccCCC---eEEEecHH-HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh--hhchHHHHH
Q psy16848        315 --GQ-LHNMDIISGTLGKAFGNIG---GYIVGTKN-FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELR  385 (514)
Q Consensus       315 --~~-~~~~di~~~S~sK~lg~~G---G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~  385 (514)
                        +. ..+..+++.||||.++.+|   ||++++++ +++.+.... .+  . ..+.+.+.++...|+..  ....+++.+
T Consensus       255 ~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~-~~--~-~~s~~~Q~a~~~~L~~~~~~~~~l~~~~  330 (468)
T PLN02450        255 LENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS-SF--G-LVSSQTQYLLSALLSDKKFTKNYLEENQ  330 (468)
T ss_pred             cccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh-hc--C-CCCHHHHHHHHHHhCCchhHHHHHHHHH
Confidence              00 2357899999999999778   99999855 556555442 21  1 35777888888877632  123567788


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCc-EEEEEeCCCc------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        386 AKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGNPA------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~~~------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      ++++++++.+.+.|++.|+++..+.++ ++++.++...      ...++...+++++||.+.||..+.. ...+++|+++
T Consensus       331 ~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~-~~~g~~Rl~f  409 (468)
T PLN02450        331 KRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHC-TEPGWFRVCF  409 (468)
T ss_pred             HHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCC-CCCCEEEEEe
Confidence            999999999999999999887777666 7778876321      1245777777678999999987543 3467999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +. .+++++++++++|++++++..
T Consensus       410 ~~-~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        410 AN-MSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             cC-CCHHHHHHHHHHHHHHHHhcc
Confidence            83 568999999999999987653

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.95  E-value=4.4e-25  Score=221.59  Aligned_cols=327  Identities=20%  Similarity=0.180  Sum_probs=217.6

Q ss_pred             cCCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|++++||.+.   .-+  +||++.+++.+|+++....  ++.+   ..+...+++++++++.+.++++|++|||+|++
T Consensus        21 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~--~~~~---~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e   95 (364)
T PRK04013         21 SQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVA--GPMF---EHEEKEEMLEELSKWVNYEYVYMGNSGTEAVE   95 (364)
T ss_pred             CCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCc--cCCc---CCHHHHHHHHHHHhhcCCCEEEEeCchHHHHH
Confidence            367777777543   222  3799999999999984322  1111   24677899999999988889999999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccchh
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPLK  167 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~  167 (514)
                      .+++.....                                              ++++++|.+++.||..  +.+.   
T Consensus        96 ~Alklar~~----------------------------------------------~gr~~Ii~~~~syHG~t~~~ls---  126 (364)
T PRK04013         96 AALKFARLY----------------------------------------------TGRKEIIAMTNAFHGRTMGALS---  126 (364)
T ss_pred             HHHHHHHHH----------------------------------------------hCCCEEEEECCccccCchhhcc---
Confidence            999765431                                              1233444444444311  0000   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                               ..+.                           ..+...+...-..+..++.+|.+.
T Consensus       127 -------------------------~~~~---------------------------~~~~~~~~p~~~~~~~~~~~d~~~  154 (364)
T PRK04013        127 -------------------------ATWK---------------------------PKYREDFEPLVPGFKHIPFNDVEA  154 (364)
T ss_pred             -------------------------CCCC---------------------------cccccCCCCCCCCcEEecCCCHHH
Confidence                                     0000                           000000000011245566677777


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+.    +++++|++++.+...|...+    +++|+++|++||+++|+||+++-...|..+  ....+++  .+|++
T Consensus       155 l~~~i~----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~--a~~~~gv--~PDiv  226 (364)
T PRK04013        155 AKEAIT----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFL--AIEHYKV--EPDIV  226 (364)
T ss_pred             HHHHhc----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchh--HHHhcCC--CCCEE
Confidence            776664    46899999999998888765    899999999999999999999921444322  1233444  79999


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                        +++|.+++ |   |.++.++++    ....  ...+++.+++.++++.++|+.+.+++   +.++.++.   +. .+.
T Consensus       227 --~~gK~lgg-G~P~~a~~~~~~~----~~~~--~~~T~~gnp~~~aaa~a~l~~i~~~~---l~~~~~~~---l~-~l~  290 (364)
T PRK04013        227 --TMGKGIGN-GVPVSLTLTNFDV----ERGK--HGSTFGGNPLACKAVAVTLRILRRER---LVEKAGEK---FI-EIK  290 (364)
T ss_pred             --EecccccC-CceeEEEEecccc----cCCC--cCCCCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHH---HH-Hhc
Confidence              89999987 5   666666554    1222  22356889999999999999997666   33444332   21 222


Q ss_pred             hCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       401 ~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      .--+.-+...|.++.+++...  ...+.+.++ ++|+.+.+       .+.+.+|+.++..+|++|++++++++++++++
T Consensus       291 ~~~v~~vRG~Gl~~gve~~~~--~~~i~~~~~-~~Gll~~~-------~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        291 GERVVTTRGRGLMIGIVLKKP--VGKYVEELQ-NRGYLVHT-------AGQRVIRLLPPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             cCcceeeeeCcEEEEEEeCCc--HHHHHHHHH-hCCcEEee-------CCCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence            111122345677888888643  567888886 89999863       23468999999999999999999999999876


Q ss_pred             c
Q psy16848        481 L  481 (514)
Q Consensus       481 ~  481 (514)
                      +
T Consensus       361 ~  361 (364)
T PRK04013        361 I  361 (364)
T ss_pred             H
Confidence            3

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.94  E-value=3e-25  Score=227.85  Aligned_cols=354  Identities=17%  Similarity=0.157  Sum_probs=239.1

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.|+|+.+.   ..++  ||++.+++.+|+++.......    .-..+...++.+++++++.  .++++|++||++|+
T Consensus        41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~----~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAv  116 (428)
T PRK07986         41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG----GITHPPAIELCRKLVAMTPQPLECVFLADSGSVAV  116 (428)
T ss_pred             CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcccc----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHH
Confidence            56667777432   2333  799999999999985432111    1134677889999999874  35788899999999


Q ss_pred             ccchhhccc------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         89 DSTLFTLGK------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        89 ~~~l~~l~~------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      +.|++....      .++...|.....+|..+..++..++.....-..            .....+..+.          
T Consensus       117 e~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~------------~~~~~~~~~~----------  174 (428)
T PRK07986        117 EVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSL------------YKGYLPENLF----------  174 (428)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhc------------cCCCCCCCEE----------
Confidence            999986542      123456777777888777666554421100000            0000000000          


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                 ++.++..    .+   ..++.
T Consensus       175 -----------------------------------------------------------~~~p~~~----~~---~~~~~  188 (428)
T PRK07986        175 -----------------------------------------------------------APAPQSR----FD---GEWDE  188 (428)
T ss_pred             -----------------------------------------------------------ECCCCcc----cc---hhhHH
Confidence                                                                       0000000    00   00123


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQ  316 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~  316 (514)
                      +|++.+++.+++. .+++.+|+++++ +...|...+    +++|+++|++||+++|+||+++ |+ |+.|.++ .+..++
T Consensus       189 ~d~~~l~~~l~~~-~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~t-G~-GrtG~~fa~~~~gv  265 (428)
T PRK07986        189 RDIAPFARLMAAH-RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIAT-GF-GRTGKLFACEHAGI  265 (428)
T ss_pred             HHHHHHHHHHHhC-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CC-ccCCCeeeecccCC
Confidence            4667777777643 346889999996 777787554    8999999999999999999996 43 5555443 244554


Q ss_pred             ccCceEEEcCCcccccC---CCeEEEecHHHHHHHHhhcC---ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAA---GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                        .+|++  +++|++++   +.|.+++++++.+.+.....   ....+++.+++.++++.++|+.+.++.   .+++.++
T Consensus       266 --~PDi~--t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~---~~~~~~~  338 (428)
T PRK07986        266 --APDIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGD---WQQQVAA  338 (428)
T ss_pred             --CCCEE--EechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence              78999  79999964   11566788898888865321   122355789999999999999886655   6888888


Q ss_pred             HHHHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        391 IVAYLRNELIQI-GFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       391 ~~~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      +.+++.+.|+++ ..+.   +...|.++.+.+.+......+.+.++ ++|+++.+.        .+.+|+.++..+|++|
T Consensus       339 ~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~~~~~~~~l~-~~Gl~~~~~--------g~~i~~~Ppl~it~~e  409 (428)
T PRK07986        339 IEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVNMAALQRFFV-EQGVWIRPF--------GKLIYLMPPYIILPEQ  409 (428)
T ss_pred             HHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcccHHHHHHHHH-HCCcEEEec--------CCEEEEeCCCCCCHHH
Confidence            899998888875 3332   23456788888865444667888886 999998642        2489999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy16848        467 IDKFVTDLLAVWKS  480 (514)
Q Consensus       467 id~~~~~l~~~l~~  480 (514)
                      ++++++++++++++
T Consensus       410 i~~~~~~l~~~l~~  423 (428)
T PRK07986        410 LQRLTAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999865

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=8e-25  Score=221.29  Aligned_cols=322  Identities=16%  Similarity=0.152  Sum_probs=223.1

Q ss_pred             eeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccc-cccccchhh
Q psy16848         19 VTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~~~~l~~   94 (514)
                      ..+||..+.  +..++.+.+++.+.+... ..       |.... ..++++.++++++.+ +.+++++|+ +++..++.+
T Consensus        20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~-~~-------Y~~~~-~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~   90 (354)
T PRK06358         20 MILDFSANINPLGVPESLKQAITENLDKL-VE-------YPDPD-YLELRKRIASFEQLDLENVILGNGATELIFNIVKV   90 (354)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHhh-hc-------CCCcc-HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence            468886543  223678888888776431 11       11122 468889999998753 345555555 555556555


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      + .  + +.|+++.+.|......++..|.+++.++...                                          
T Consensus        91 ~-~--~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~------------------------------------------  124 (354)
T PRK06358         91 T-K--P-KKVLILAPTFAEYERALKAFDAEIEYAELTE------------------------------------------  124 (354)
T ss_pred             h-C--C-CcEEEecCChHHHHHHHHHcCCeeEEEeCcc------------------------------------------
Confidence            4 2  4 5788899988887766666666655443210                                          


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                                                                         ..++..+++.++.
T Consensus       125 -------------------------------------------------------------------~~~~~~d~~~~~~  137 (354)
T PRK06358        125 -------------------------------------------------------------------ETNFAANEIVLEE  137 (354)
T ss_pred             -------------------------------------------------------------------ccCCCccHHHHHh
Confidence                                                                               0011111122222


Q ss_pred             ccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      . .++++++++++|+||||.+++   +++|.++|+++++++|+||+|..........+...... ..+..++++||||.+
T Consensus       138 ~-~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~  215 (354)
T PRK06358        138 I-KEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLE-NFKNLIIIRAFTKFF  215 (354)
T ss_pred             h-ccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhcc-CCCCEEEEEechhhc
Confidence            2 335788889999999999999   78999999999999999999984433221111111111 235689999999999


Q ss_pred             cCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc
Q psy16848        332 GNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV  406 (514)
Q Consensus       332 g~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  406 (514)
                      |.+|   ||++++ +.+++.+......+    +.+.+.+.++..+++.  ...+.+.++.++++++++.+.|++. ++.+
T Consensus       216 gl~G~RiG~lv~~~~~~~~~~~~~~~~~----~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  289 (354)
T PRK06358        216 AIPGLRLGYGLTSNKNLAEKLLQMREPW----SINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIKV  289 (354)
T ss_pred             cCcchhheeeecCCHHHHHHHHHhCCCC----cchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            9768   999874 67888887665433    5677777787777752  2345677888899999999999887 7766


Q ss_pred             ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       407 ~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ..+.++++++++++   ..++++.|+ ++||.+.++..+. ..+.+++|++++   ++++.++++++|++++
T Consensus       290 ~~~~g~f~~~~~~~---~~~~~~~l~-~~gI~v~~~~~f~-~~~~~~iRls~~---~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        290 YKPSVNFIFFKLEK---PIDLRKELL-KKGILIRSCSNYR-GLDENYYRVAVK---SREDNKKLLKALEVIL  353 (354)
T ss_pred             cCCcceEEEEEcCc---hHHHHHHHH-HCCeEEEECCCCC-CCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence            67778888888875   368999996 8999999998642 234679999998   8999999999998864

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.94  E-value=6.4e-25  Score=225.96  Aligned_cols=214  Identities=20%  Similarity=0.156  Sum_probs=154.5

Q ss_pred             CCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCC-CCCccccCCCccCceEEEcCCcccccC
Q psy16848        258 KIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEH-GAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~-~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                      ++++++++++||||||.+++   +++|.++|++|++++|+||+|.....+.. ..++..... ..+..++++||||.+|.
T Consensus       172 ~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-~~~~vi~~~SfSK~~g~  250 (402)
T TIGR03542       172 PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPG-AKECAIEFRSFSKTAGF  250 (402)
T ss_pred             CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCC-CcccEEEEecCccccCC
Confidence            45789999999999999999   79999999999999999999995433221 111111111 12457889999999987


Q ss_pred             CC---eEEEecHHHH--------HHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        334 IG---GYIVGTKNFI--------DTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       334 ~G---G~l~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +|   ||++++++++        +.+.......  ..+.+.+.+.++...++........+.++.++++++.+.+.|++.
T Consensus       251 pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  328 (402)
T TIGR03542       251 TGVRLGWTVVPKELTYADGHSVIQDWERRQCTK--FNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA  328 (402)
T ss_pred             CCcceEEEEecHHHhhcchhhHHHHHHHHhhhc--ccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            78   9999998876        2221111111  114566777776666652211234556777888999999999988


Q ss_pred             CCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        403 GFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       403 g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      ++.+..+ .+.+++++++...+..++.+.++++.||.+.++..+. ..+.+++|+++.  .+++++++++++|+++
T Consensus       329 ~~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~-~~~~~~iRis~~--~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       329 GFKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFG-PSGEGFVRFSAF--GKRENIVEACERIKEA  401 (402)
T ss_pred             CceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHhh
Confidence            8776655 4558889988755677899998767899999988643 334679999976  3789999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK07481 hypothetical protein; Provisional

Probab=99.94  E-value=8.9e-25  Score=226.34  Aligned_cols=354  Identities=17%  Similarity=0.145  Sum_probs=234.9

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a   87 (514)
                      +|++|+||.+.   ..++  ||++.+++.+++++......   ......+...++.++++++++   .++++|++||++|
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~---~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEA  116 (449)
T PRK07481         40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYST---FDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDS  116 (449)
T ss_pred             CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceec---ccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHH
Confidence            56666666432   2233  79999999999998443211   111134777889999999873   4678889999999


Q ss_pred             cccchhhcccc-------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         88 NDSTLFTLGKM-------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        88 ~~~~l~~l~~~-------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      ++.|++.....       ++...|.....+|.....++...+.....  ..           .....+.+      .+  
T Consensus       117 ve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~--~~-----------~~~~~~g~------~~--  175 (449)
T PRK07481        117 VETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFR--RN-----------YEPLLPGC------FH--  175 (449)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccc--cc-----------cCCCCCCC------EE--
Confidence            99999865421       23446677777888777666554432110  00           00000000      00  


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                   ++.++          ...+
T Consensus       176 -------------------------------------------------------------~~~~~----------~~~~  184 (449)
T PRK07481        176 -------------------------------------------------------------VETPW----------LYRN  184 (449)
T ss_pred             -------------------------------------------------------------eCCCc----------cccc
Confidence                                                                         00000          0001


Q ss_pred             cCC--Chh--------HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCC
Q psy16848        241 RHN--DVN--------HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGE  305 (514)
Q Consensus       241 ~~~--d~~--------~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~  305 (514)
                      +.+  |.+        .+++.+.....+++++|++++++...|...+    +++|+++|++||+++|.||+++ +|+.|.
T Consensus       185 ~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~  264 (449)
T PRK07481        185 PFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS  264 (449)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch
Confidence            111  222        2333343223467999999999999998776    8999999999999999999999 666554


Q ss_pred             CCCCccccCCCccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcC-----ceEeccCCcHHHHHHHHHHHHHhh
Q psy16848        306 HGAGIGERDGQLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAA-----GFIFTTSLPPTVLAGAREAIRILS  377 (514)
Q Consensus       306 ~~~~~~~~~~~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~  377 (514)
                      .+  ..+.+++  .||++  +++|++++.   -|.+++++++.+.+.....     ....+.+.+++.++++.++|+.+.
T Consensus       265 ~~--a~~~~gv--~PDiv--~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~  338 (449)
T PRK07481        265 WF--GSRGWGV--KPDIM--CLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVV  338 (449)
T ss_pred             hh--HhhhcCC--CCCEE--EEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            22  1234444  79999  899999761   2778889888887754211     122355789999999999999886


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHhC--CCcc---ccCCCcEEEEEeCCC-----------ccHHHHHHHHHHhCCeEEec
Q psy16848        378 SQEGVELRAKHQDIVAYLRNELIQI--GFPV---EHTPSHIIPIKIGNP-----------ALNTKICDMLLKEKGHYVQP  441 (514)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~-----------~~~~~~~~~Ll~~~GI~v~~  441 (514)
                      ++.   ..++.+++.+++.+.|+++  ..++   +...|.++.+++...           .....+...++ ++||++.+
T Consensus       339 ~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~  414 (449)
T PRK07481        339 RED---LPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAR-ENGVLVRP  414 (449)
T ss_pred             hhh---HHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHH-hCCeEEEe
Confidence            554   7778888888888888775  3333   344667888877321           12346777785 89999864


Q ss_pred             ccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        442 INYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       442 ~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .        .+.+|++++..+|++|+|+++++++++++++.
T Consensus       415 ~--------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  447 (449)
T PRK07481        415 S--------GTKIILSPPLVIQREDVDRIVDALDAGLSAVP  447 (449)
T ss_pred             c--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            2        13589999999999999999999999998753

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.94  E-value=7.9e-25  Score=226.68  Aligned_cols=205  Identities=19%  Similarity=0.207  Sum_probs=154.6

Q ss_pred             CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        258 KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      +++++++++++++..|.+.+    +++|+++|++||+++|.||+++ +|+.|..+  ..+..++  .+|++  +++|+++
T Consensus       205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~--a~~~~gv--~PDiv--~~gK~l~  278 (442)
T TIGR00709       205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF--AFEHAGI--EPDFV--VMSKAVG  278 (442)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh--HHHHcCC--CCcEE--EEccccc
Confidence            46899999999998888755    8999999999999999999999 66665422  1223444  78999  6999998


Q ss_pred             CCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc-
Q psy16848        333 NIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV-  406 (514)
Q Consensus       333 ~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-  406 (514)
                      + |   |+++++++ .+.+....  ...+++.+++.++++.++|+.+.++.   +.++.+++.+++.+.|+++  ..+. 
T Consensus       279 ~-G~Pigav~~~~~-~~~~~~~~--~~~T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v  351 (442)
T TIGR00709       279 G-GLPLAVLLIAPE-FDAWQPAG--HTGTFRGNQLAMVTGTEALNYWKDDN---LAQNAQERGERITSFLDDMIKEHPCI  351 (442)
T ss_pred             C-CcccEEEEEchH-HhccCCCc--CCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            7 6   88888877 44443222  22355789999999999999886655   6778888888888888765  3332 


Q ss_pred             --ccCCCcEEEEEeCCCc--------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        407 --EHTPSHIIPIKIGNPA--------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       407 --~~~~~~~~~i~l~~~~--------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                        +...|.++.+++.+..              ....+...++ ++|+.+.+..     ...+.+|+.++..+|++|++++
T Consensus       352 ~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~-----~~~~~l~~~Ppl~it~~ei~~~  425 (442)
T TIGR00709       352 GNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACF-ENGLLLETGG-----REGEVFRLLCPITIDQEECEEG  425 (442)
T ss_pred             eeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHH-HCCeEEeecC-----CCCCEEEEECCCCCCHHHHHHH
Confidence              2446778888774321              1345677775 8999986421     1246899999999999999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      +++++++++++
T Consensus       426 ~~~l~~~l~~~  436 (442)
T TIGR00709       426 ISRFKQAVEEA  436 (442)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=223.05  Aligned_cols=217  Identities=21%  Similarity=0.238  Sum_probs=161.2

Q ss_pred             CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      +++++++++++|+||||.+++   +++|.++|+++|+++|+|++|..... +....++....+ ..+..+++.||||.+|
T Consensus       160 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~-~~~~~i~~~S~SK~~~  238 (397)
T PRK07568        160 TPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEG-LEDRVIIIDSVSKRYS  238 (397)
T ss_pred             CccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCC-CcCCEEEEecchhhcc
Confidence            456889999999999999998   78999999999999999999984332 222222222221 1356799999999998


Q ss_pred             CCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        333 NIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       333 ~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      .+|   ||++++ +++++.+......   ..+.+.+.+.++..+++.. +.+++++++.++++++.+.+.|++. ++.+.
T Consensus       239 ~~G~R~G~~~~~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  314 (397)
T PRK07568        239 ACGARIGCLISKNKELIAAAMKLCQA---RLSPPTLEQIGAAALLDTP-ESYFDEVREEYKKRRDILYEELNKIPGVVCE  314 (397)
T ss_pred             CCCcceEEEecCCHHHHHHHHHHhhc---cCCCCcHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence            767   999874 6788776554322   2256777777777777642 4567778889999999999999887 66666


Q ss_pred             cCCCc-EEEEEeCCCccHHHHHHHHHHh-----CCeEEecccCCCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        408 HTPSH-IIPIKIGNPALNTKICDMLLKE-----KGHYVQPINYPTVP--VGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       408 ~~~~~-~~~i~l~~~~~~~~~~~~Ll~~-----~GI~v~~~~~~~~~--~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .+.++ +++++++.. +..++++.++++     +||.+.|+..+...  .+.+++|++++  .+++++++++++|+++++
T Consensus       315 ~p~g~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~  391 (397)
T PRK07568        315 KPKGAFYIIAKLPVD-DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKRAMEILKEALE  391 (397)
T ss_pred             CCCcceEEEEecCCC-CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHH
Confidence            66665 456777653 467888888643     69999998864322  23579999997  468999999999999887


Q ss_pred             Hc
Q psy16848        480 SL  481 (514)
Q Consensus       480 ~~  481 (514)
                      +.
T Consensus       392 ~~  393 (397)
T PRK07568        392 KY  393 (397)
T ss_pred             Hh
Confidence            65

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.94  E-value=7.4e-25  Score=226.43  Aligned_cols=202  Identities=25%  Similarity=0.308  Sum_probs=153.9

Q ss_pred             CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc-cccCCCccCceEEEcCCccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI-GERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~-~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+++++|+++++++..|...+    +++|.++|++||+++|+||+++ +|..|   ..+ ...+++  .+|++  +++|.
T Consensus       219 ~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G---~~~a~~~~gv--~pDiv--t~~K~  291 (441)
T PRK05769        219 PEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG---KMFAIEHFGV--EPDII--TLAKA  291 (441)
T ss_pred             CCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---ceehhhccCC--CCCEE--EEccc
Confidence            457899999999999999888    9999999999999999999999 44443   222 233444  68998  78999


Q ss_pred             ccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCc
Q psy16848        331 FGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFP  405 (514)
Q Consensus       331 lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  405 (514)
                      ++. |   |++++++++.+.. .....  .+++.+++.++++.++|+.+.+    +..++.+++.+++++.|+++  ..+
T Consensus       292 l~~-G~p~gav~~~~~i~~~~-~~~~~--~T~~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~  363 (441)
T PRK05769        292 IAG-GLPLGAVIGRAELMFLP-PGSHA--NTFGGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYE  363 (441)
T ss_pred             ccC-CcccEEEEEehhhhhcC-CCCCC--CCCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            985 4   8888888877533 22222  2446789999999999998854    47888889999999888775  233


Q ss_pred             cc---cCCCcEEEEEeCCC------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        406 VE---HTPSHIIPIKIGNP------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       406 ~~---~~~~~~~~i~l~~~------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      ++   ...|.++.+.+.+.      .....+.+.++ ++||.+.+       .+.+.+|++++..+|++|++++++++++
T Consensus       364 ~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~Gil~~~-------~~~~~lr~~p~l~~t~~~id~~~~~l~~  435 (441)
T PRK05769        364 FIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAF-KRGLLLLG-------AGKSAIRIIPPLIITEEEADIGLEILEE  435 (441)
T ss_pred             CeeeeecceEEEEEEeccCCccccHHHHHHHHHHHH-hCCcEEec-------CCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            32   33566777777432      23456777886 89999863       2346899999999999999999999999


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      +++++
T Consensus       436 ~l~~~  440 (441)
T PRK05769        436 AIKEL  440 (441)
T ss_pred             HHHHh
Confidence            98753

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=6.8e-25  Score=223.74  Aligned_cols=321  Identities=16%  Similarity=0.093  Sum_probs=224.8

Q ss_pred             CceeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccc-cccccch
Q psy16848         17 NRVTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VANDSTL   92 (514)
Q Consensus        17 g~~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~~~~l   92 (514)
                      +..++|+..+  .+..+|.+.+++.+. ..    ..  .  |+. ....++++.++++++.+ +.+++++|+ +++..++
T Consensus        51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~-~~----~~--~--Yp~-~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~  120 (380)
T PLN03026         51 PEDIVKLDANENPYGPPPEVLEALGNM-KF----PY--V--YPD-PESRRLRAALAEDSGLESENILVGCGADELIDLLM  120 (380)
T ss_pred             ccceEEccCCCCCCCCCHHHHHHHHhh-Hh----hc--c--CCC-CCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHH
Confidence            4567888654  344567777776542 11    00  1  111 12578999999999854 346666665 4666666


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++..  +||.|+++.+.|......++..|.+++.++..+.                                       
T Consensus       121 ~~~~~--~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~---------------------------------------  159 (380)
T PLN03026        121 RCVLD--PGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPD---------------------------------------  159 (380)
T ss_pred             HHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCC---------------------------------------
Confidence            66655  9999999999887655555555555544322100                                       


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                             .                                             ..|.+.+++.+
T Consensus       160 -----------------------~---------------------------------------------~~d~~~l~~~~  171 (380)
T PLN03026        160 -----------------------F---------------------------------------------SLDVPRIVEAV  171 (380)
T ss_pred             -----------------------C---------------------------------------------CcCHHHHHHHH
Confidence                                   0                                             01333343333


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      +   +++++++++++|+||||.+++.+++.++++.. +++|+||+|........   ...... ..+.+++++||||.+|
T Consensus       172 ~---~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~---~~~~~~-~~~~viv~~SfSK~~g  243 (380)
T PLN03026        172 E---THKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQES---RMKWVK-KYDNLIVLRTFSKRAG  243 (380)
T ss_pred             h---ccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcc---hHHHHH-hCCCEEEEecchHhhc
Confidence            2   34689999999999999999999999999865 99999999983322111   111111 2357899999999999


Q ss_pred             CCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-Ccccc
Q psy16848        333 NIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-FPVEH  408 (514)
Q Consensus       333 ~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~  408 (514)
                      .+|   ||+++++++++.+......+    +.+.+.+.++.++|+.  .+.+++.++.++++++++.+.|++++ +.+.+
T Consensus       244 laGlRiGy~~~~~~~i~~l~~~~~~~----~~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p  317 (380)
T PLN03026        244 LAGLRVGYGAFPLSIIEYLWRAKQPY----NVSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLEPYP  317 (380)
T ss_pred             CccccceeeecCHHHHHHHHHhcCCC----CCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECC
Confidence            878   99999999999887766543    5677778888888863  34567788889999999999999885 44445


Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.++++++.++...+..++.+.|+ ++||.++++..   ...++++|++++   +.+++++++++|+++
T Consensus       318 ~~~~f~~~~~~~~~~~~~~~~~l~-~~gI~v~~~~~---~~~~~~lRis~~---~~~~~~~l~~al~~~  379 (380)
T PLN03026        318 SDANFILCRVTSGRDAKKLKEDLA-KMGVMVRHYNS---KELKGYIRVSVG---KPEHTDALMEALKQL  379 (380)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH-HCCeEEEECCC---CCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence            667788888875455788999996 89999987643   234579999998   788999999998764

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.94  E-value=6e-25  Score=223.49  Aligned_cols=228  Identities=19%  Similarity=0.271  Sum_probs=174.8

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      |++.+++.+.+    +++.+++.+.+|. |...|+++|+++|+++|+++++|++|+.|..+...  .........++|++
T Consensus       208 D~d~l~~~~~~----~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~--~~~~~~~~~~~D~v  280 (493)
T PRK13580        208 DYDEIAALARE----FKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKV--FTGDEDPVPHADIV  280 (493)
T ss_pred             CHHHHHHHHhh----cCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceecccc--chhhcCCCCCCcEE
Confidence            55666666543    4677888888877 55789999999999999999999999998876221  11111112368999


Q ss_pred             EcCCcccc-cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        324 SGTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       324 ~~S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ++|+||++ |+.||++++++++++.+... .++.+++..++..++++. ++.....+...+.++++.++.++|.+.|.+.
T Consensus       281 tgT~hKaL~GP~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iAA~av-Al~e~~~~ef~~y~~~l~~Na~~La~~L~~~  358 (493)
T PRK13580        281 TTTTHKTLRGPRGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMAAKAV-ALAEARTPEFQKYAQQVVDNARALAEGFLKR  358 (493)
T ss_pred             EeCChhhccCCCeEEEEecHHHHHHHhhC-CCcccCCCccHHHHHHHH-HHHHHhCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999 77789999999999888544 356666666665555555 4554444445678999999999999999999


Q ss_pred             CCccc--cCCCcEEEEEeCCCccHH-HHHHHHHHhCCeEEecccCCCCCCC---CcEEEEEeCC----CCCHHHHHHHHH
Q psy16848        403 GFPVE--HTPSHIIPIKIGNPALNT-KICDMLLKEKGHYVQPINYPTVPVG---EEKIRLAPTP----FHTREMIDKFVT  472 (514)
Q Consensus       403 g~~~~--~~~~~~~~i~l~~~~~~~-~~~~~Ll~~~GI~v~~~~~~~~~~~---~~~iRl~~~~----~~t~e~id~~~~  472 (514)
                      |+++.  .+.++++.+.+++..... .+.+.| .+.||.+.+...|+.+.+   ...||++++.    .++++|++++++
T Consensus       359 G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L-~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad  437 (493)
T PRK13580        359 GARLVTGGTDNHLVLIDVTSFGLTGRQAESAL-LDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAE  437 (493)
T ss_pred             CCCccCCCCCCCEEEEEeCCHHHHHHHHHHHH-HHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHH
Confidence            99876  356789999887654333 555577 599999999888888877   7899999886    567999999999


Q ss_pred             HHHHHHHHc
Q psy16848        473 DLLAVWKSL  481 (514)
Q Consensus       473 ~l~~~l~~~  481 (514)
                      .|.++++..
T Consensus       438 ~l~~~l~~~  446 (493)
T PRK13580        438 LIVKVLSNT  446 (493)
T ss_pred             HHHHHHHhh
Confidence            999988754

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=5.1e-25  Score=223.10  Aligned_cols=321  Identities=16%  Similarity=0.089  Sum_probs=224.1

Q ss_pred             ceeeecccCC-CC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchh
Q psy16848         18 RVTCRLSSVQ-YK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLF   93 (514)
Q Consensus        18 ~~~~d~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~   93 (514)
                      ...+|++.+. .+ .+|.+.+++.+.+...-..       |+.. ...++++.++++++.+  +.++++++++++..++.
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-------y~~~-~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~   95 (353)
T PRK05387         24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRL-------YPDP-NADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFL   95 (353)
T ss_pred             cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhc-------CCCC-cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHH
Confidence            4568886533 23 4678888888877641111       1111 2368999999998753  34444445567777887


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      ++..  +||.|+++.++|......++..|.+++.++..                                          
T Consensus        96 ~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~------------------------------------------  131 (353)
T PRK05387         96 AFFN--HDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD------------------------------------------  131 (353)
T ss_pred             HhcC--CCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC------------------------------------------
Confidence            7766  99999999999977665555555554433221                                          


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                           +++..+.+.+.
T Consensus       132 ---------------------------------------------------------------------~~~~~d~~~l~  142 (353)
T PRK05387        132 ---------------------------------------------------------------------DDFSIDVEDYL  142 (353)
T ss_pred             ---------------------------------------------------------------------CCCCCCHHHHH
Confidence                                                                                 11111112222


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHc-CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH-GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~-gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      +    +++++++++||||||.+++.+++.++++.+ ++++|+||+|... .+..   ...... ..+.+++++||||.+|
T Consensus       143 ~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~-~~~~---~~~~~~-~~~~~i~~~S~SK~~~  213 (353)
T PRK05387        143 R----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDF-GGES---AIPLID-RYPNLLVVQTFSKSRS  213 (353)
T ss_pred             h----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCccccc-CCcc---hHHHHh-hCCCEEEEEehhHhhc
Confidence            1    246889999999999999999999999886 9999999999731 1111   111111 1246899999999999


Q ss_pred             CCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        333 NIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       333 ~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      .+|   ||+++++++++.+......+ ...+.+...+.++.++++.  .+..++.+++++++++++.+.|++.|+.+.++
T Consensus       214 ~~GlR~G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  290 (353)
T PRK05387        214 LAGLRVGFAIGHPELIEALNRVKNSF-NSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVLPS  290 (353)
T ss_pred             chhhhceeeecCHHHHHHHHHhhccC-CCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeECCC
Confidence            768   99999999999887765332 1235677788777777752  34566788889999999999999988876555


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .++++++.++. .+..++++.|. ++||.+.....   +...+++|++++   +.+++++++++|++++.
T Consensus       291 ~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~~~~---~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        291 KANFVFARHPS-HDAAELAAKLR-ERGIIVRHFNK---PRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             cCcEEEEECCC-CCHHHHHHHHH-HCCEEEEECCC---CCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            66777777663 45778999995 89999974322   234679999998   67999999999998764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.94  E-value=6.2e-25  Score=227.72  Aligned_cols=205  Identities=23%  Similarity=0.319  Sum_probs=155.4

Q ss_pred             CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        258 KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      +++++|++++++...|...+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++  .||++  +++|.++
T Consensus       224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~--a~~~~gv--~PDiv--t~gK~l~  297 (459)
T PRK06931        224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF--AFEHAGI--EPDII--VMSKAVG  297 (459)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHH--HhhhcCC--CCCEE--Eeccccc
Confidence            56899999999999998876    8999999999999999999999 76666432  2234554  89999  8999998


Q ss_pred             CCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc-
Q psy16848        333 NIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV-  406 (514)
Q Consensus       333 ~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-  406 (514)
                      + |   |.++.++++ +.+....  ...+++.+++.++++.++|+.+.++.   ..++.+++.+++.+.|+++  ..++ 
T Consensus       298 g-G~Pi~av~~~~~~-~~~~~~~--~~~T~~gnpla~aaala~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~i  370 (459)
T PRK06931        298 G-GLPLAVLGIKKEF-DAWQPGG--HTGTFRGNQLAMATGLTTLKILKEEN---LAQNAAERGEWLKAQLAELQKRYPCI  370 (459)
T ss_pred             C-CcceeeeeeHHHH-hhccCCC--CCCCCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            7 5   667777664 5553322  22355789999999999999887665   6778888888888888765  2332 


Q ss_pred             --ccCCCcEEEEEeCCC--------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        407 --EHTPSHIIPIKIGNP--------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       407 --~~~~~~~~~i~l~~~--------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                        +...|.++.+++...              .....+...++ ++|+.+.+..     ...+.+|+.++..+|++|++++
T Consensus       371 ~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~-----~~~~~l~~~Ppl~it~~eid~~  444 (459)
T PRK06931        371 GNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLERGG-----RNGNVVRLLPPLLITQAECEEF  444 (459)
T ss_pred             EeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEeecC-----CCCCEEEEECCCCcCHHHHHHH
Confidence              244667888877421              11345777776 8999986421     1246899999999999999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      ++++++++.++
T Consensus       445 ~~~l~~~l~~~  455 (459)
T PRK06931        445 IDRFEQALLAA  455 (459)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1e-24  Score=220.45  Aligned_cols=320  Identities=19%  Similarity=0.190  Sum_probs=225.6

Q ss_pred             eeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecccc-ccccchhh
Q psy16848         19 VTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYV-ANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~-a~~~~l~~   94 (514)
                      ..+|++.  +++..++.+.+++.+.+.....  ..    ++. +...++++.++++++.+ +.+++++|++ ++..++.+
T Consensus        23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~--~~----y~~-~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~   95 (351)
T PRK14807         23 YKYKMDANETPFELPEEVIKNIQEIVKSSQV--NI----YPD-PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLA   95 (351)
T ss_pred             ceeEccCCCCCCCCCHHHHHHHHHHhhcCcc--cC----CCC-ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHH
Confidence            4566643  4444578899888887753211  11    111 22578999999998854 4566777765 46666667


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      +..  +||.|+++.++|......++..|++++.++.++.                                         
T Consensus        96 l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-----------------------------------------  132 (351)
T PRK14807         96 FIN--KGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKED-----------------------------------------  132 (351)
T ss_pred             hcC--CCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCC-----------------------------------------
Confidence            755  9999999999998776666666666654432100                                         


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                           .                                             ..|.+.+++.++.
T Consensus       133 ---------------------~---------------------------------------------~~d~~~l~~~~~~  146 (351)
T PRK14807        133 ---------------------Y---------------------------------------------TYDVGSFIKVIEK  146 (351)
T ss_pred             ---------------------C---------------------------------------------CCCHHHHHHHhhc
Confidence                                 0                                             0134444444432


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI  334 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~  334 (514)
                         .+++++++++|+||||.+++.+++.++|++++.++|+||+|... .+...   .+... ..+..++++||||.+|.+
T Consensus       147 ---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~-~~~~~---~~~~~-~~~~vi~~~S~SK~~~~~  218 (351)
T PRK14807        147 ---YQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEF-YGNTI---VDVIN-EFENLIVLRTLSKAFGLA  218 (351)
T ss_pred             ---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhh-cccch---HHHhh-hCCCEEEEecchHhcccc
Confidence               35789999999999999999999999999999999999999732 22211   11111 225689999999999976


Q ss_pred             C---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC
Q psy16848        335 G---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP  410 (514)
Q Consensus       335 G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  410 (514)
                      |   ||+++++++++.+......+    ..+.+.+.++...++.   ..+++..+.++++++++.+.|++. |+.+.++.
T Consensus       219 GlRiG~~v~~~~~~~~~~~~~~~~----~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~  291 (351)
T PRK14807        219 GLRVGYAVANENILKYLNLVKSPY----NINSLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKVYPSK  291 (351)
T ss_pred             hhceeeeecCHHHHHHHHHccCCC----CcCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEECcCC
Confidence            8   99999999999887655433    4567777777777753   345566677888888899999876 77766667


Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.++++.+++   ..++++.|+ ++||.+.++...  ....+++|++++   +.++.+++++.|++++
T Consensus       292 ~~~~~i~~~~---~~~~~~~l~-~~gV~v~~~~~~--~~~~~~iRis~~---~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        292 TNFILVKFKD---ADYVYQGLL-ERGILVRDFSKV--EGLEGALRITVS---SCEANDYLINGLKELL  350 (351)
T ss_pred             ccEEEEEcCC---HHHHHHHHH-HCCEEEEECCCC--CCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence            7788888763   577888885 889999865421  123579999998   7888999999998753

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.94  E-value=1.6e-24  Score=224.61  Aligned_cols=366  Identities=12%  Similarity=0.089  Sum_probs=228.7

Q ss_pred             CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-------CCcEEEEec
Q psy16848         16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-------KEAGLVFTS   83 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~~~i~~~s   83 (514)
                      +|+.|+||.+.   ..+  .||+|.+++.++++++...... .+   ..+...++.+++++.+.       .++++|++|
T Consensus        62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~-~~---~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~s  137 (472)
T PRK08742         62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLA-GF---THEPAVQLAEQLLAIAPRQDGRAPLSKVFYADN  137 (472)
T ss_pred             CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCcccc-cc---CCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCC
Confidence            55566666332   122  3899999999999875432211 11   24667889999998874       357888999


Q ss_pred             cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--C
Q psy16848         84 CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--G  161 (514)
Q Consensus        84 Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~  161 (514)
                      |++|++.|++.....                                        ...+..++++++|.+++.||..  |
T Consensus       138 GSEAvE~AlKlAr~~----------------------------------------~~~~g~~~r~~ii~~~~syHG~t~g  177 (472)
T PRK08742        138 GSAGVEVALKMAFHY----------------------------------------FHNRGEHRRTRFIALENGYHGETIG  177 (472)
T ss_pred             chHHHHHHHHHHHHH----------------------------------------HHhcCCCCCcEEEEECCCcCCCchh
Confidence            999999999654320                                        0001123467788888888621  2


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                      .+.                            .++..         ........+.....-+|.++.... ..+.......
T Consensus       178 als----------------------------~~~~~---------~~~~~~~p~~~~~~~~~~p~~~~~-~~~~~~~~~~  219 (472)
T PRK08742        178 ALA----------------------------VGDIP---------LYRRVYAPLLLESLFAPSPDAYLA-EPGQSAEDYA  219 (472)
T ss_pred             hhh----------------------------ccCCc---------ccccccCCCCCCCEEeCCCCcccc-ccCCCHHHHH
Confidence            111                            00000         000000000000000010000000 0000000000


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEec-CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG  315 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~  315 (514)
                      ..+.+.+++.+.+ ..+++++|++++ .++..|...+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.++
T Consensus       220 ~~~~~~l~~~~~~-~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~--a~e~~g  296 (472)
T PRK08742        220 LQAADALQALFEQ-SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLF--ACEQAG  296 (472)
T ss_pred             HHHHHHHHHHHHh-CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch--HHHhcC
Confidence            1124555566653 235789999999 6888898766    8999999999999999999999 77766432  123455


Q ss_pred             CccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhc--C--ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYA--A--GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      +  .||++  +++|.+++.   -|.+++++++.+.+....  .  ..+.+++.+++.++++.++|+.+.++.   +.++.
T Consensus       297 v--~PDiv--~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~---l~~~~  369 (472)
T PRK08742        297 V--MPDLL--CLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDD---VIARN  369 (472)
T ss_pred             C--CCCEE--EEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCC---HHHHH
Confidence            5  79999  899999761   277888888887764211  1  122355789999999999999987666   56666


Q ss_pred             HHHHHHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        389 QDIVAYLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       389 ~~~~~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                      +++.+++.+.++.. ..+.   +...|.++.+++....           ....+.+.++ ++||.+.+.        .+.
T Consensus       370 ~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~--------g~v  440 (472)
T PRK08742        370 QPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAAL-ARGVVLRPL--------GDV  440 (472)
T ss_pred             HHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHH-HCCeEEEec--------CCE
Confidence            66677776655543 2222   3446678888774211           1245677786 899998641        258


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        454 IRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +|+.+++.+|++|+++++++|+++++++.
T Consensus       441 i~~~PpL~it~~ei~~~~~~l~~~l~~~~  469 (472)
T PRK08742        441 LYWMPPYCVDEAQLALLADTTRHAIDEAV  469 (472)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998754

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.94  E-value=1.1e-24  Score=226.21  Aligned_cols=364  Identities=15%  Similarity=0.119  Sum_probs=231.6

Q ss_pred             CCceeeecccCC---CC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQ---YK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+|+.+.-   -+  +||+|.+++.+|+++......   . .-..+...++.+++++++.  .++++|++||++|+
T Consensus        54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~---~-~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAv  129 (460)
T PRK06916         54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTL---L-GLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAV  129 (460)
T ss_pred             CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccc---c-ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            555666664321   12  389999999999998543211   1 1124667889999999874  36789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++.....                                        .-.+..++|++++.++++||..  +.+.  
T Consensus       130 e~AlklAr~~----------------------------------------~~~~g~tgr~~ii~~~~~YHG~t~~als--  167 (460)
T PRK06916        130 EIAIKMAFQY----------------------------------------WQNKGKPKKQRFVTLKNAYHGDTIGAVS--  167 (460)
T ss_pred             HHHHHHHHHH----------------------------------------HHhcCCCCCcEEEEECCcCCcccHHhHh--
Confidence            9999644320                                        0001124567788888888621  1110  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                ..+..         ........+.....-+|.++..... .+.....+...+++
T Consensus       168 --------------------------~s~~~---------~~~~~~~~~~~~~~~~p~p~~~~~~-~~~~~~~~~~~~~~  211 (460)
T PRK06916        168 --------------------------VGAID---------LFHQVYSSLLFEAIKMPYPYTYRSP-YGNDKAEIVKKHLE  211 (460)
T ss_pred             --------------------------ccCCc---------ccccccCCCCCCCEEeCCCcccccc-cCCChHHHHHHHHH
Confidence                                      00000         0000000000000011111000000 00000000112345


Q ss_pred             HHHHHHhhccCCCceEEEEec-CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        247 HLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      .+++.+++. .+++++|++++ +++..|.+.+    +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++  .+
T Consensus       212 ~l~~~l~~~-~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~--a~~~~gv--~P  286 (460)
T PRK06916        212 ELEELLKEK-HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF--ACEHENV--TP  286 (460)
T ss_pred             HHHHHHHhC-CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh--HHHhcCC--CC
Confidence            566666633 35689999999 6998898865    8999999999999999999998 55554322  2234554  79


Q ss_pred             eEEEcCCcccccCCC----eEEEecHHHHHHHHhhc-----CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYA-----AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       321 di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      |++  +++|.+++ |    |.+++++++.+.+....     .....+++.+++.++++.++|+.+.++.   +.++.+++
T Consensus       287 Div--~~gK~l~g-G~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~  360 (460)
T PRK06916        287 DIM--TAGKGLTG-GYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTN---LIEQVARK  360 (460)
T ss_pred             Cee--eeehhhhc-CccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHH
Confidence            999  89999976 3    77888988887764311     1122255789999999999999886655   77888888


Q ss_pred             HHHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        392 VAYLRNELIQI-GFPV---EHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       392 ~~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      .+++.+.|+++ ..+.   +...|.++.+++.+..           ....+...++ ++||.+.+.        .+.+|+
T Consensus       361 g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~--------g~~l~~  431 (460)
T PRK06916        361 TEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSR-ELGMLTRPL--------GNTIVF  431 (460)
T ss_pred             HHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHH-HCCeEEEec--------CCEEEE
Confidence            99999888876 2222   2345667777764211           1246778886 899998642        248999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .++..+|++|+++++++++++++++
T Consensus       432 ~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        432 MPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             eCCcccCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999865

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1e-24  Score=221.91  Aligned_cols=322  Identities=18%  Similarity=0.173  Sum_probs=221.5

Q ss_pred             eeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CC---CcEEEEeccc-cccc
Q psy16848         20 TCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QK---EAGLVFTSCY-VAND   89 (514)
Q Consensus        20 ~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~---~~~i~~~sGt-~a~~   89 (514)
                      .+|+..+  .+..+|.+.+++.+++.........+. ..|    ..++++.+++++    |.   +..|++++|+ +++.
T Consensus        28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~-~~g----~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~  102 (368)
T PRK03317         28 PVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYP-DRD----AVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQ  102 (368)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCC-CCc----hHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHH
Confidence            4677543  344578899999988764221111111 112    345555555555    42   2346666665 5677


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.++|......++..|.+++.++..+                                     
T Consensus       103 ~~~~~~~~--~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~-------------------------------------  143 (368)
T PRK03317        103 QLLQAFGG--PGRTALGFVPSYSMHPIIARGTHTEWVEGPRAA-------------------------------------  143 (368)
T ss_pred             HHHHHhcC--CCCEEEEeCCChHHHHHHHHhcCCeeEEcccCC-------------------------------------
Confidence            77777766  999999999999888776666666555432110                                     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                               +.                                             .-|.+.++
T Consensus       144 -------------------------~~---------------------------------------------~~d~~~l~  153 (368)
T PRK03317        144 -------------------------DF---------------------------------------------TLDVDAAV  153 (368)
T ss_pred             -------------------------CC---------------------------------------------CCCHHHHH
Confidence                                     00                                             01344555


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceEEEcCCc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      +.+++   .+++++++++|+||||.+++.+++.++++.+++++|+||+|+... .+..  +...... .....++++|||
T Consensus       154 ~~~~~---~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~--~~~~~~~-~~~~~i~~~SfS  227 (368)
T PRK03317        154 AAIAE---HRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTP--SALTLLP-EYPRLVVSRTMS  227 (368)
T ss_pred             HHHhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCc--CHHHHHH-hCCCEEEEEech
Confidence            55442   246788899999999999999999999999999999999999332 2211  1111211 123568899999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |.+|.+|   ||+++++++++.+......+    ..+++.++++.++++..  +...+.+++++++++.+.+.|++.|+.
T Consensus       228 K~~g~~GlRiG~~~~~~~~~~~l~~~~~~~----~~s~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~  301 (368)
T PRK03317        228 KAFAFAGGRLGYLAAAPAVVDALRLVRLPY----HLSAVTQAAARAALRHA--DELLASVAALRAERDRVVAWLRELGLR  301 (368)
T ss_pred             hhhccchhhhhhhhCCHHHHHHHHhcCCCC----CCCHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence            9999768   99999999999887655332    56788888888888743  234455667788888899999988887


Q ss_pred             cccCCCcEEEE-EeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        406 VEHTPSHIIPI-KIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       406 ~~~~~~~~~~i-~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +..+.++++.+ .++   +..++.+.|+ ++||.+.+...      ++++|++++   +.+++++++++++++++.
T Consensus       302 ~~~~~~~~~~~~~~~---~~~~~~~~l~-~~Gv~v~~~~~------~~~iRi~~~---~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        302 VAPSDANFVLFGRFA---DRHAVWQGLL-DRGVLIRDVGI------PGWLRVTIG---TPEENDAFLAALAEVLAT  364 (368)
T ss_pred             eCCCCCcEEEEeccC---CHHHHHHHHH-HCCEEEEeCCC------CCeEEEecC---CHHHHHHHHHHHHHHHHH
Confidence            77777776544 332   3678888885 89999985321      469999987   789999999999998754

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.94  E-value=2.1e-24  Score=222.80  Aligned_cols=342  Identities=18%  Similarity=0.198  Sum_probs=227.5

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~~   89 (514)
                      +|++|+|+.+.-   .++  ||+|.+++.+|+++... .+      -..+...++.+++.+.+ +.++++|++||++|++
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~------~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e  123 (428)
T PRK12389         51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL-YG------TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVM  123 (428)
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc-cC------CCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence            566677764322   223  79999999999997321 11      12466788888988876 4567899999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccchh
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPLK  167 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~  167 (514)
                      .|++...                                              ..+++++++.+++.||-.  +.+.   
T Consensus       124 ~AlklAr----------------------------------------------~~tgr~~ii~~~~~yHG~t~~~~~---  154 (428)
T PRK12389        124 TTIRVAR----------------------------------------------AYTGRTKIIKFAGCYHGHSDLVLV---  154 (428)
T ss_pred             HHHHHHH----------------------------------------------HhhCCCEEEEECCCcCCChHHHHH---
Confidence            9995433                                              223456666666666521  1000   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHh-hCCCCEEEecCCChh
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIR-NSSAPKIIYRHNDVN  246 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~-~~g~~~~~v~~~d~~  246 (514)
                                               ..+..                 ..  ...  .+....+. .....+..++++|.+
T Consensus       155 -------------------------~~~~~-----------------~~--~~~--~~~~~~~~~~~~~~~~~~~~~d~~  188 (428)
T PRK12389        155 -------------------------AAGSG-----------------PS--TLG--TPDSAGVPKSIAQEVITVPFNDIE  188 (428)
T ss_pred             -------------------------hcCCc-----------------cc--ccC--CCCCCCCCCcccCceEEcCCCCHH
Confidence                                     00000                 00  000  00000000 011245667788999


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      .+++.+++.. +++++|+++++++..|.+.|    +++|+++|++||+++|.||+++-+..+..  +..+.+++  .+|+
T Consensus       189 ~l~~~l~~~~-~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~--~a~~~~gv--~PDi  263 (428)
T PRK12389        189 ALKEALDKWG-DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYG--GAQDLLGV--EPDL  263 (428)
T ss_pred             HHHHHHHhcC-CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcc--hhhHHhCC--CCCe
Confidence            9999887543 56899999999999999888    99999999999999999999992233211  12334454  7999


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      +  +++|++++ |   |.+++++++.+.+..... ....+++.+++.++++.++|+.+.++.   +.++++++.+++++.
T Consensus       264 v--t~gK~lgg-G~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~---l~~~~~~~g~~l~~~  337 (428)
T PRK12389        264 T--ALGKIIGG-GLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEG---VYEKLDRLGAMLEEG  337 (428)
T ss_pred             e--eechhhcC-CCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHH
Confidence            8  99999986 4   777889999888753221 122255789999999999999986554   778888889998888


Q ss_pred             HHhC----CCcccc-CCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        399 LIQI----GFPVEH-TPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       399 L~~~----g~~~~~-~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      |+++    ++.... ...+++.+.+...             .....+.+.++ ++||++.+...       +.+  .++.
T Consensus       338 L~~l~~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-------~~~--~~~l  407 (428)
T PRK12389        338 ILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLML-NQGINLAPSKY-------EAW--FLTT  407 (428)
T ss_pred             HHHHHHhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHH-HCCcEeecCCC-------CCe--eecC
Confidence            8764    322211 2223666655321             11356778886 89999975421       122  3566


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~  480 (514)
                      .+|++|++++++++++++++
T Consensus       408 ~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        408 AHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            78999999999999998865

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.94  E-value=7.8e-25  Score=225.31  Aligned_cols=337  Identities=17%  Similarity=0.123  Sum_probs=226.3

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCC-cC-cccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhh
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGG-TR-NISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~   94 (514)
                      .|.|.++... -++.+.+++.+.++....+... .. ......+..+++++.+++++|.+  ..+|++|||+++..++.+
T Consensus         5 ~yld~aa~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~   83 (402)
T TIGR02006         5 IYLDYAATTP-VDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKG   83 (402)
T ss_pred             EEeeCCcCCC-CCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHH
Confidence            5677765543 3688999998888653222211 11 11112356788999999999965  456667778888877766


Q ss_pred             ccc--cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         95 LGK--MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        95 l~~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      +..  ..+||+|+++..+|.++...++..                                                   
T Consensus        84 l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~---------------------------------------------------  112 (402)
T TIGR02006        84 IAHFYKSKGNHIITSKTEHKAVLDTCRYL---------------------------------------------------  112 (402)
T ss_pred             HHHhhcCCCCEEEECCCccHHHHHHHHHH---------------------------------------------------
Confidence            531  248999999999999987543211                                                   


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-----CChhH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNH  247 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~  247 (514)
                                                                                ...|.+++.++.     .|.+.
T Consensus       113 ----------------------------------------------------------~~~g~~v~~v~~~~~~~~d~~~  134 (402)
T TIGR02006       113 ----------------------------------------------------------EREGFEVTYLPPKSNGLIDLEE  134 (402)
T ss_pred             ----------------------------------------------------------HhcCCEEEEEccCCCCcCCHHH
Confidence                                                                      111223333331     13333


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +++.    .+++++++++++++|++|...|+++|.++|+++|+++++|++++.|..        +......++|++++|+
T Consensus       135 l~~~----l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~--------~~~~~~~~~D~~~~s~  202 (402)
T TIGR02006       135 LKAA----IRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI--------PINVNELKVDLMSISG  202 (402)
T ss_pred             HHHh----cCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCc--------ccCccccCCCEEEEeh
Confidence            4333    345689999999999999999999999999999999999999997654        1111134789999999


Q ss_pred             cccccCCC-eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        328 GKAFGNIG-GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       328 sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      ||.+|+.| |+++.+++....+.....+.     ....+.+.....++..+++.+. ++++.+.++.+++.+++.+.|++
T Consensus       203 ~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~  281 (402)
T TIGR02006       203 HKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKS  281 (402)
T ss_pred             hhhcCCCceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhc
Confidence            99988877 88877765443333221110     0123456667777778888764 46778889999999999999987


Q ss_pred             C-CCccccC---CC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEEeCC
Q psy16848        402 I-GFPVEHT---PS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLAPTP  460 (514)
Q Consensus       402 ~-g~~~~~~---~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~~~~  460 (514)
                      + ++.+..+   .. +.+.+.++. ...+++...+   +++.++.|..|....                ..+++|+|++.
T Consensus       282 ~~~v~~~~~~~~~~p~~~~v~f~~-~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~  357 (402)
T TIGR02006       282 IEEVYLNGDLEHRVPGNLNVSFNY-VEGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGR  357 (402)
T ss_pred             CCCEEEeCCccccCCCeEEEEEeC-cCHHHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecC
Confidence            6 5544322   11 222333332 2244554443   588888777654211                13799999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcC
Q psy16848        461 FHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+|++|+|++++.|+++++.++
T Consensus       358 ~~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       358 FTTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1.1e-24  Score=221.75  Aligned_cols=324  Identities=17%  Similarity=0.130  Sum_probs=221.0

Q ss_pred             ceeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccc-cccccchh
Q psy16848         18 RVTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VANDSTLF   93 (514)
Q Consensus        18 ~~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~~~~l~   93 (514)
                      ..++|+..+  .+...|.+.+++.+..... ..       |+.... .++++.++++++.+ ..+++++|+ +++..++.
T Consensus        36 ~~~i~l~~~~~~~~~~~~~~~al~~~~~~~-~~-------Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  106 (371)
T PRK05166         36 PRIAKLGSNENPLGPSPAVRRAFADIAELL-RL-------YPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAVICR  106 (371)
T ss_pred             cceEEcCCCCCCCCCCHHHHHHHHHHHHHh-hc-------CCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            357888653  3444677888877644321 11       122222 37888899998754 345566665 55666666


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      ++.+  +||.|+++.++|......++..|.+++.++....                                        
T Consensus       107 ~~~~--~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~----------------------------------------  144 (371)
T PRK05166        107 AVLR--PGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPD----------------------------------------  144 (371)
T ss_pred             HhcC--CCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCC----------------------------------------
Confidence            6655  9999999999998877666666665554432100                                        


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                            .                                             .-|.+.+++.+ 
T Consensus       145 ----------------------~---------------------------------------------~~~~~~l~~~~-  156 (371)
T PRK05166        145 ----------------------L---------------------------------------------GFDLDALCAAV-  156 (371)
T ss_pred             ----------------------C---------------------------------------------CCCHHHHHHhh-
Confidence                                  0                                             00334444433 


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                         +++++++++++++||||.+++.+++.++++.  .++++|+||+|.....+....+.........+..++++||||.+
T Consensus       157 ---~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~  233 (371)
T PRK05166        157 ---ARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAY  233 (371)
T ss_pred             ---hcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhh
Confidence               3457899999999999999997666666654  48899999999854433222121111110123579999999999


Q ss_pred             cCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy16848        332 GNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE  407 (514)
Q Consensus       332 g~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  407 (514)
                      |.+|   ||+++ ++++++.+......+    +.+.+.+.++.+++..  .+++++.++.++++++++.+.|++.|+.+.
T Consensus       234 ~l~GlRiG~~i~~~~~l~~~~~~~~~~~----~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~  307 (371)
T PRK05166        234 GLAGLRVGYGLVSDPELVGLLDRVRTPF----NVNGAAQAAALAALDD--EEHLAKGVALALAERERLKKELAEMGYRIA  307 (371)
T ss_pred             hcchhheeeeecCCHHHHHHHHHhccCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCcCeeC
Confidence            9768   99765 678888887654332    4677777777777752  346677788889999999999999888766


Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        408 HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       408 ~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++.+.++++.++.  +..++++.|+ ++||.+.++..+   ...+++|++++   +.++.+++.+.|+.++
T Consensus       308 p~~g~fl~~~~~~--~~~~l~~~l~-~~gi~v~p~~~~---~~~~~iRi~~~---~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        308 PSRANFLFFDARR--PASAVAEALL-RQGVIVKPWKQP---GFETFIRVSIG---SPEENDHFVAALDKVL  369 (371)
T ss_pred             CCcCCEEEEeCCC--CHHHHHHHHH-HCCeEEecCCCC---CCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            6677787777653  3678999996 789999987642   23679999999   7888999999988764

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.94  E-value=6.1e-25  Score=225.63  Aligned_cols=344  Identities=14%  Similarity=0.137  Sum_probs=231.6

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~   88 (514)
                      +|++|+|+.+.-   .+|  ||++.+++.+++++. ...      .-..+...++.+++.+.++.  +++.|++||++|+
T Consensus        51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-~~~------~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~  123 (433)
T PRK00615         51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERG-TSY------GLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEAT  123 (433)
T ss_pred             CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC-CCC------CCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHH
Confidence            677777774422   223  899999999999873 211      11246678889999988753  4789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc--cCCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM--TGAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~  166 (514)
                      +.|++..                                              +..++|++++.++++||.  +..+.. 
T Consensus       124 e~AiklA----------------------------------------------r~~tgr~~ii~~~~~yHG~td~~~~~-  156 (433)
T PRK00615        124 MTAVRLA----------------------------------------------RGITGRSIIIKFLGCYHGHADTLLQG-  156 (433)
T ss_pred             HHHHHHH----------------------------------------------HHhhCCCEEEEEcCccCCCCcccCcc-
Confidence            9999533                                              233456778888888862  110000 


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                              ....+.                  ..++   .+..+  ...........++++|.+
T Consensus       157 ------------------------~~~~~~------------------~~~~---~~~~~--~~~~~~~~~~~~~~~d~~  189 (433)
T PRK00615        157 ------------------------ISFSET------------------SLDT---LTHLV--DTDLAHPLTLSLPYNDFQ  189 (433)
T ss_pred             ------------------------cccCCC------------------CcCc---CCCCC--CCCCCCCCeEeCCCCCHH
Confidence                                    000000                  0000   00000  000011223456778899


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCce
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~d  321 (514)
                      .+++.+.+.. +++++|+++++++..|...|    +++|+++|++||+++|+||+++ |+ .|..  +..+.+++  .+|
T Consensus       190 ~l~~~l~~~~-~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~--ga~~~~gv--~PD  263 (433)
T PRK00615        190 IFQTVMNSLG-HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQG--GAAAIYHV--KPD  263 (433)
T ss_pred             HHHHHHHhcC-CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHh--HHHHhcCC--CCC
Confidence            9999987543 56889999999999999887    6799999999999999999996 43 4422  23344554  789


Q ss_pred             EEEcCCcccccC--CCeEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       322 i~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      ++  +++|++|+  ++|++++++++.+.+...... ...+++.+++.++++.++|+.+.++.   .+++++++.+++.+.
T Consensus       264 i~--~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~---~~~~~~~~g~~l~~~  338 (433)
T PRK00615        264 IT--VYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQG---FYTQLSTLEQNFLSP  338 (433)
T ss_pred             eE--EEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHH
Confidence            98  79999975  358899999999888543221 12244689999999999999886554   677777788888666


Q ss_pred             HHhC----CCcccc-CCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        399 LIQI----GFPVEH-TPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       399 L~~~----g~~~~~-~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      |++.    ++++.. ..+.++.+.+.+.             .....+...|+ ++||++.+..++.         ..++.
T Consensus       339 l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~---------~~ls~  408 (433)
T PRK00615        339 IEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAF-SKGVYLSPSPFEA---------SFLSS  408 (433)
T ss_pred             HHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHH-HCCeeecCccccc---------cceec
Confidence            6553    555321 2566777777432             11346888886 8999997655422         13455


Q ss_pred             CCCHHHHHHHHHHHHHHHHHc
Q psy16848        461 FHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+|++|+|+++++++++++++
T Consensus       409 ~ht~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        409 AHSMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            689999999999999998874

>KOG1402|consensus

Probab=99.94  E-value=4.3e-25  Score=205.28  Aligned_cols=344  Identities=19%  Similarity=0.169  Sum_probs=249.3

Q ss_pred             CCceeeecccCCCC-------------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEe
Q psy16848         16 SNRVTCRLSSVQYK-------------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFT   82 (514)
Q Consensus        16 ~g~~~~d~~~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~   82 (514)
                      +|.+++|..+..|+             .||.+.+++.+|.++.-.   +++.+|  .....++++.+++++|.+..+=.+
T Consensus        49 ~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtl---ssrafY--nd~~~~f~~~vt~lf~~~kvlpmn  123 (427)
T KOG1402|consen   49 KGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTL---SSRAFY--NDVLGEFAEYVTKLFGYDKVLPMN  123 (427)
T ss_pred             CCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhh---hhHHHh--hhhHHHHHHHHHHhcCcceeeecc
Confidence            56666666666665             289999999999997432   334444  467789999999999999998899


Q ss_pred             ccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccc--cc
Q psy16848         83 SCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS--MT  160 (514)
Q Consensus        83 sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~--~~  160 (514)
                      +|.+|++.++.-..+++                                      ..-+..+..+.+++.+.+.||  +.
T Consensus       124 TGaEa~Eta~KLaR~wg--------------------------------------y~~K~ip~nka~il~~~~nFhGrT~  165 (427)
T KOG1402|consen  124 TGAEAVETACKLARKWG--------------------------------------YRKKNIPKNKAKILSAENNFHGRTL  165 (427)
T ss_pred             cchhHHHHHHHHHHHHH--------------------------------------HhhccCCccceeEEEecccccCcee
Confidence            99999999986544210                                      000111223344555555553  11


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                      |.+..                         .+                             =|+++...-.........+
T Consensus       166 ~ais~-------------------------s~-----------------------------d~ds~~~fgp~~P~~~~~v  191 (427)
T KOG1402|consen  166 GAISL-------------------------ST-----------------------------DPDSWDGFGPFLPGVVDKV  191 (427)
T ss_pred             eeEEe-------------------------cC-----------------------------CcchhhccCCCCCCcceee
Confidence            11100                         00                             0011111112222336677


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG  315 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~  315 (514)
                      |++|.++++.+|++   ++.+++++++.|...|++.|    +++++++|++|++++|.||+|+ +++.|+..  ..++..
T Consensus       192 ~Y~d~eale~~l~~---~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~l--a~d~en  266 (427)
T KOG1402|consen  192 PYGDAEALEVALKS---PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLL--ACDYEN  266 (427)
T ss_pred             ccCCHHHHHHHhcC---CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEE--Eeehhh
Confidence            88999999999987   67899999999999999988    8999999999999999999999 55555422  233433


Q ss_pred             CccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                        ..+|++  -++|++++ |    +.+++++++.-.+++..++-  +++.+++.++++.++|+.+.++.   +.++...+
T Consensus       267 --v~PDiv--ilgKalSG-G~~Pvsavl~~~~im~~~~pgeHgs--TyggNpLg~~vaiAalevi~eek---L~era~~l  336 (427)
T KOG1402|consen  267 --VRPDIV--ILGKALSG-GVYPVSAVLADDDIMLNIKPGEHGS--TYGGNPLGCAVAIAALEVIVEEK---LVERAAKL  336 (427)
T ss_pred             --cCCCeE--EEeccccC-CeeeeEEEEecHHHHhccCCCcccc--ccCCChHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence              478999  79999987 5    66788888888887777665  45889999999999999997665   88889999


Q ss_pred             HHHHHHHHHhC--CC----ccccCCCcEEEEEeC----CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        392 VAYLRNELIQI--GF----PVEHTPSHIIPIKIG----NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       392 ~~~l~~~L~~~--g~----~~~~~~~~~~~i~l~----~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      .+.++..|.++  .+    ..+...|.+..+.+.    ...++.++|-.+ +++|+...|.+       .+.+|+++++.
T Consensus       337 G~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~l-k~~g~LAkptH-------~~IiRfaPPL~  408 (427)
T KOG1402|consen  337 GEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLAL-KENGLLAKPTH-------GNIIRFAPPLV  408 (427)
T ss_pred             HHHHHHHHHhccccccchhheeeccceEEEEEeccccccchhHHHHHHcc-cccccccCCCC-------CCeEEecCCcc
Confidence            99999999988  33    223456666666654    224567788888 59999987544       45999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~  479 (514)
                      ++++|+++.++++.+.+.
T Consensus       409 I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  409 ISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             cCHHHHHHHHHHHHHHhc
Confidence            999999999999988753

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.94  E-value=7.7e-25  Score=224.82  Aligned_cols=357  Identities=15%  Similarity=0.121  Sum_probs=228.6

Q ss_pred             CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.|+||.+.   ..+  +||++.+++.+++++.......    .-..+...++.+++++.+.  .++++|++||++|+
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~  113 (422)
T PRK05630         38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFG----GLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSV  113 (422)
T ss_pred             CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccC----CcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHH
Confidence            55666666432   222  3799999999999985432111    1124667889999999873  56789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccch
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (514)
                      +.|++......                                        -.+...+|++++.+++.||-.  +.+.  
T Consensus       114 e~AlklAr~~~----------------------------------------~~~g~~~r~~ii~~~~~yHG~t~~als--  151 (422)
T PRK05630        114 EVAIKMALQYS----------------------------------------KGQGHPERTRLLTWRSGYHGDTFAAMS--  151 (422)
T ss_pred             HHHHHHHHHHH----------------------------------------HhcCCCCCcEEEEECCCcCCccHHHhc--
Confidence            99996543200                                        001112456788888888621  1110  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                ..+..        .........+......+|.+...          ..+.++.+
T Consensus       152 --------------------------~~~~~--------~~~~~~~~~~~~~~~~~p~~~~~----------~~~~~~~~  187 (422)
T PRK05630        152 --------------------------VCDPE--------GGMHSLWKGTLPEQIFAPAPPVR----------GSSPQEIS  187 (422)
T ss_pred             --------------------------cCCCc--------ccccccccccCCCCeEcCCCccc----------CCChHHHH
Confidence                                      00000        00000000000000000000000          00111222


Q ss_pred             HHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCccCc
Q psy16848        247 HLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLHNM  320 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~~~  320 (514)
                      ...+.+++...+++++|++++. ++..|...+    +++|+++|++||+++|+||+++ |+ |+.|..+ .+.+++  .|
T Consensus       188 ~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~t-G~-GrtG~~~a~~~~gv--~P  263 (422)
T PRK05630        188 EYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIAT-GF-GRTGELFATLAAGV--TP  263 (422)
T ss_pred             HHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccee-CC-CcCchhhHHHhcCC--CC
Confidence            2233333333356899999996 888888766    8999999999999999999997 33 3444332 234444  79


Q ss_pred             eEEEcCCcccccC---CCeEEEecHHHHHHHHhhc--C--ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYA--A--GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       321 di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                      |++  +++|++++   ++|++++++++.+.+....  .  ....++..++..++++.++|+.+.++.   .+++++++.+
T Consensus       264 Di~--t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~---~~~~~~~~g~  338 (422)
T PRK05630        264 DIM--CVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGM---WRKQVKRIEA  338 (422)
T ss_pred             Cee--eeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCc---HHHHHHHHHH
Confidence            999  99999954   3488889999988875321  1  122355789999999999999986554   5678888888


Q ss_pred             HHHHHHHhC-CCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        394 YLRNELIQI-GFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       394 ~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      ++++.|+++ ..+.   +...|.++.+++.+......+.+.++ ++|+++.+.        .+.+|+.++..+|++|+|+
T Consensus       339 ~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~~-~~Gl~~~~~--------g~~l~~~PpL~it~~~i~~  409 (422)
T PRK05630        339 ELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVDMEEATQAAV-DHGVWLRPF--------GRLVYVMPPYITTSEQIAQ  409 (422)
T ss_pred             HHHHHHHHhhcCCCeeeeeccccEEEEEECCcccHHHHHHHHH-HCCeEEEec--------CCEEEEECCccCCHHHHHH
Confidence            888877764 2222   33457788888865444567888886 899998631        2589999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy16848        470 FVTDLLAVWKS  480 (514)
Q Consensus       470 ~~~~l~~~l~~  480 (514)
                      ++++++++++.
T Consensus       410 ~~~~l~~al~~  420 (422)
T PRK05630        410 ICAALAAAVKA  420 (422)
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.94  E-value=2.4e-24  Score=223.34  Aligned_cols=340  Identities=18%  Similarity=0.182  Sum_probs=238.5

Q ss_pred             eeec-ccCCCCCChhHHHHHHHHH-HHhCCCCCCcCcccCcchHHHHHHH----HHHhHcCCCc-EEEE----ecccccc
Q psy16848         20 TCRL-SSVQYKVPKGGRKCLGEAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVAKLHQKEA-GLVF----TSCYVAN   88 (514)
Q Consensus        20 ~~d~-~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~la~~~~~~~-~i~~----~sGt~a~   88 (514)
                      .+.+ +|.+|. .|.+.+++...+ .+|+.+++++++..|+. .++++|+    +..+.|+.++ .+.+    +||+.||
T Consensus        36 ~l~liasen~~-s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~-~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN  113 (475)
T PLN03226         36 GLELIASENFT-SRAVMEALGSCLTNKYSEGLPGARYYGGNE-YIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPAN  113 (475)
T ss_pred             CeeEecCCccC-CHHHHHHHhhHHhccccCCCCCCcCcCCCh-hHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHH
Confidence            3444 344443 588999999999 78999999999988875 7777775    4566667554 3334    8999999


Q ss_pred             ccchhhccccCCCceEEecC------ccchhhhhhhhcCCCCee----eccCCChHHHHHHHHhcccCCCcEEEeecccc
Q psy16848         89 DSTLFTLGKMIPGLHYISDA------GNHASMIQGIRNSSAPKI----IYRHNDVNHLTQVLENMDVKIPKLVAFETVHS  158 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~------~~h~~~~~~~~~~~~~~~----~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~  158 (514)
                      +.++.++++  |||.|+..+      ..|.+...+.+.......    .|.++.                          
T Consensus       114 ~av~~aL~~--pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~--------------------------  165 (475)
T PLN03226        114 FAVYTALLQ--PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE--------------------------  165 (475)
T ss_pred             HHHHHHhCC--CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC--------------------------
Confidence            999999977  999999855      556665555544443322    333330                          


Q ss_pred             ccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEE
Q psy16848        159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKI  238 (514)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~  238 (514)
                                                          ..|                                         
T Consensus       166 ------------------------------------~~g-----------------------------------------  168 (475)
T PLN03226        166 ------------------------------------STG-----------------------------------------  168 (475)
T ss_pred             ------------------------------------CCC-----------------------------------------
Confidence                                                000                                         


Q ss_pred             EecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCcc
Q psy16848        239 IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       239 ~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~  318 (514)
                         .-|++.+++.+++.   ++++|++. . +.+|...|+++|.++|+++|+++++|++|..|..+..+.+.  .   ..
T Consensus       169 ---~iD~d~Le~~l~~~---~pklIv~~-~-S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~--p---~~  235 (475)
T PLN03226        169 ---LIDYDKLEKKAMLF---RPKLIIAG-A-SAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAAS--P---FE  235 (475)
T ss_pred             ---CcCHHHHHHHHhhc---CCeEEEEe-c-CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC--C---CC
Confidence               01455555555432   24555442 2 23678888999999999999999999999988876544211  1   12


Q ss_pred             CceEEEcCCcccc-cCCCeEEEecHHHH-----------HH--HHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848        319 NMDIISGTLGKAF-GNIGGYIVGTKNFI-----------DT--IRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL  384 (514)
Q Consensus       319 ~~di~~~S~sK~l-g~~GG~l~~~~~~~-----------~~--l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  384 (514)
                      .+|++++|+||++ |+.||+++++++..           +.  .........++++.++...++..++++.+...+.+++
T Consensus       236 ~~Div~~t~hK~L~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~  315 (475)
T PLN03226        236 YCDVVTTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAY  315 (475)
T ss_pred             CCeEEEecCcccccCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHH
Confidence            6899999999999 78889888887544           22  1121222234556677778888889998877777888


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccC--CCcEEEEEe-CCCccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEE---
Q psy16848        385 RAKHQDIVAYLRNELIQIGFPVEHT--PSHIIPIKI-GNPALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRL---  456 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~i~l-~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl---  456 (514)
                      ++++.++.+++.+.|.+.|+.+..+  ..+++.+.+ +.+.+..++.+.| ++.||.+.....|..  +...+.+|+   
T Consensus       316 ~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L-~~~~I~~nk~~~p~~~~~~~~~giRiGt~  394 (475)
T PLN03226        316 QKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVL-DLAHITLNKNAVPGDSSALVPGGVRIGTP  394 (475)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHH-HHCCCEECCCCCCCCcccCCCCCcccCcH
Confidence            9999999999999999999988753  356776766 3344566777777 699999976543221  123467888   


Q ss_pred             -EeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        457 -APTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       457 -~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                       ..+..++++|++++++.|.++++.
T Consensus       395 ~lt~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        395 AMTSRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHH
Confidence             455688999999999999999874

>PRK06149 hypothetical protein; Provisional

Probab=99.94  E-value=1.2e-24  Score=244.50  Aligned_cols=351  Identities=19%  Similarity=0.187  Sum_probs=232.9

Q ss_pred             CCceeeecccCCC-C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEecccccccc
Q psy16848         16 SNRVTCRLSSVQY-K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVANDS   90 (514)
Q Consensus        16 ~g~~~~d~~~~~~-~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a~~~   90 (514)
                      +|+.|+||.++.. +  +||+|.+++.+++.+..+.   ++.   ..+...++++++++++  +.++++|++||++|++.
T Consensus       583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~---~~~---~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~  656 (972)
T PRK06149        583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTN---SRF---HYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDL  656 (972)
T ss_pred             CCCEEEECCCCccccCCCCHHHHHHHHHHHHhcccc---ccc---cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHH
Confidence            6788888865421 2  3899999999999974332   122   2367789999999998  46788999999999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc--CCccchhH
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT--GAICPLKE  168 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  168 (514)
                      |++...                                              ..++++++|.+++.||..  |...    
T Consensus       657 AlklAr----------------------------------------------~~tgr~~ii~~~~~yHG~t~ga~~----  686 (972)
T PRK06149        657 AIRLAW----------------------------------------------AASGRRDVVSVLEAYHGWTVATDA----  686 (972)
T ss_pred             HHHHHH----------------------------------------------HhcCCCeEEEEeCCCCCcChhHhh----
Confidence            996332                                              122344555555555410  1000    


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC--ceeeecchHHHHhhCCCCEEEecCCC--
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP--EVAIHASMIQGIRNSSAPKIIYRHND--  244 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~--~v~~~~~~~~~~~~~g~~~~~v~~~d--  244 (514)
                                           +.+....+.    +       ....+.+.  .++.|..+.          ..++.++  
T Consensus       687 ---------------------~s~~~~~~~----~-------~~~~~~~~v~~~~~p~~~~----------~~~~~~~~~  724 (972)
T PRK06149        687 ---------------------VSTSIADNP----Q-------ALETRPDWVHPVESPNTYR----------GRFRGADSA  724 (972)
T ss_pred             ---------------------hcCCccccc----c-------ccCCCCCCeEEeCCCcccC----------CcCCCcccH
Confidence                                 000000000    0       00000000  000011000          0011111  


Q ss_pred             ---hhHHHHHHhhc--cCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccC
Q psy16848        245 ---VNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERD  314 (514)
Q Consensus       245 ---~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~  314 (514)
                         .+.+++.++..  ..+++++|++++++...|.+.+    +++|+++|++||+++|+||+++ +|..|+.+.++ +.+
T Consensus       725 ~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~-e~~  803 (972)
T PRK06149        725 ADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGF-EQQ  803 (972)
T ss_pred             HHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhh-hhc
Confidence               23444444432  2356899999999999998888    9999999999999999999996 77776533222 345


Q ss_pred             CCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      ++  .+|++  +++|++|+ |   |++++++++.+.+.... .+..+++.+++.++++.++|+.+.++.   +.++.+++
T Consensus       804 gv--~PDiv--t~gK~lg~-G~Pl~av~~~~~i~~~~~~~~-~~~sT~~gnP~~~aaala~L~~i~~e~---l~~~~~~~  874 (972)
T PRK06149        804 GV--VPDII--TMAKGMGN-GHPLGAVITRREIAEALEAEG-YFFSSTGGSPVSCRIGMAVLDVLREEK---LQENARRV  874 (972)
T ss_pred             CC--CCCEE--EecccccC-CeeeEEEEEcHHHHhhhccCC-cccCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence            55  79999  99999986 5   88999999988876421 122245789999999999999987665   77888888


Q ss_pred             HHHHHHHHHhC--CCcc---ccCCCcEEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        392 VAYLRNELIQI--GFPV---EHTPSHIIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       392 ~~~l~~~L~~~--g~~~---~~~~~~~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      .+++++.|+++  ..++   +...|.++.+++..        ......+++.++ ++||.+.+..     ...+.+|+.+
T Consensus       875 G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~-~~Gvl~~~~g-----~~~~vl~~~P  948 (972)
T PRK06149        875 GDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLL-ELGVIMQPTG-----DHLNILKIKP  948 (972)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHH-hCCeEEeecC-----CCCCEEEEEC
Confidence            88888888775  2332   34467788887731        122457888886 8999997531     1246899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +..+|+++++++++++++++.+
T Consensus       949 pl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        949 PLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999865

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.94  E-value=3.1e-24  Score=217.71  Aligned_cols=328  Identities=13%  Similarity=0.035  Sum_probs=223.8

Q ss_pred             eeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccc-cccccchhh
Q psy16848         19 VTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~~~~l~~   94 (514)
                      ..+|++.+  .+..+|.+.+++.+.+... ..       |+... ..++++.++++++.+ ..+++++|+ +++..++.+
T Consensus        23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~~-~~-------Y~~~~-~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~   93 (360)
T PRK07392         23 AILDFSASINPLGPPESVIAAIQSALSAL-RH-------YPDPD-YRELRLALAQHHQLPPEWILPGNGAAELLTWAGRE   93 (360)
T ss_pred             cEEEeCCcCCCCCCCHHHHHHHHHHHHHh-hc-------CCCcC-HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence            46888643  3444678888888766541 11       11112 357888888888643 335566655 455556655


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      +.   +||.|+++.++|......++..|.+++.++..+.+.                     +                 
T Consensus        94 l~---~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---------------------~-----------------  132 (360)
T PRK07392         94 LA---QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQP---------------------S-----------------  132 (360)
T ss_pred             hC---CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccC---------------------C-----------------
Confidence            43   788999999999999988888888777654311000                     0                 


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                                                                         ..+...+++..+.
T Consensus       133 -------------------------------------------------------------------~~~~~~~~~~~~~  145 (360)
T PRK07392        133 -------------------------------------------------------------------PGLTLRLQTLPPQ  145 (360)
T ss_pred             -------------------------------------------------------------------cccccCHHHHHHh
Confidence                                                                               0000112222222


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI  334 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~  334 (514)
                        .++++++++++||||||.+++.++|.++++++++ +|+||+|..........++..... ..+..++++||||.+|.+
T Consensus       146 --~~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~-~~~~vi~i~S~SK~~~l~  221 (360)
T PRK07392        146 --LTPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLA-EYPNLIILRSLTKFYSLP  221 (360)
T ss_pred             --ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhh-cCCCEEEEEechhhhcCC
Confidence              1357899999999999999999999999999985 666999994432211112111111 224689999999999976


Q ss_pred             C---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC
Q psy16848        335 G---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP  410 (514)
Q Consensus       335 G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  410 (514)
                      |   ||+++++++++.+......    .+.+.+.+.++.++++.  ....+..++.++++++++.+.|+++ ++.+.++.
T Consensus       222 GlRiG~~v~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~  295 (360)
T PRK07392        222 GLRLGYAIAHPDRLQRWQQWRDP----WPVNGLAAAAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLTPLPSA  295 (360)
T ss_pred             chheeeeeCCHHHHHHHHhhCCC----CCCCHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCC
Confidence            8   9999999998888755432    25788888888888763  2344556677888899999999887 77665555


Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.+++++++.  +..++++.+++++||.+.++..+. ..+.+++|++++   +.++.+++.+.+++++.
T Consensus       296 ~~fl~~~~~~--~~~~l~~~ll~~~gv~v~pg~~f~-~~~~~~iRi~~~---~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        296 ANFLLVQSQG--SALQLQEKLLQQHRILIRDCLSFP-ELGDRYFRVAVR---TEAENQRLLEALAAILA  358 (360)
T ss_pred             CCEEEEEcCC--CHHHHHHHHHhhCCEEEEeCCCCC-CCCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            6677777654  467888887667899999998653 334679999998   57777888888877654

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.94  E-value=1.3e-24  Score=221.73  Aligned_cols=334  Identities=19%  Similarity=0.147  Sum_probs=220.3

Q ss_pred             cCCceeeecccCC-CC---CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSVQ-YK---VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~~-~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~a~~   89 (514)
                      .+|++++|+.++. +.   .||++.+++.++++++....  +.   ...+...++.+.+...  .+ .++|++|||+|+.
T Consensus        26 ~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~~~--~~---~~~~~~~~la~~l~~~--~~~~~~~~~SGseA~~   98 (375)
T PRK04260         26 TDGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWHSP--NL---YLNSLQEEVAQKLIGD--KDYLAFFCNSGAEANE   98 (375)
T ss_pred             CCCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCccc--Cc---cCCHHHHHHHHHHhcC--cCCEEEEcCccHHHHH
Confidence            3778889996653 22   38999999999998754321  11   1123334444433321  12 3578899999999


Q ss_pred             cchhhcccc-CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         90 STLFTLGKM-IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        90 ~~l~~l~~~-~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .++..+... ++...|..+..+|.++..+++..+.+...-..                .+.                   
T Consensus        99 ~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~----------------~~~-------------------  143 (375)
T PRK04260         99 AAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGF----------------GDG-------------------  143 (375)
T ss_pred             HHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCC----------------CCC-------------------
Confidence            998876432 23445556778888888777665543210000                000                   


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                       -..+...+.+|++.+
T Consensus       144 -----------------------------------------------------------------~~~~~~~~~~dl~~l  158 (375)
T PRK04260        144 -----------------------------------------------------------------VPHFSYAIFNDLNSV  158 (375)
T ss_pred             -----------------------------------------------------------------CCCeEEeCCCCHHHH
Confidence                                                                             001122234577777


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCccCceEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLHNMDII  323 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~~~di~  323 (514)
                      ++.+.    ++++++++++++|++|...+    ++++.++|+++|+++|+||+|+ | +++.+.++ ....+.  .+|++
T Consensus       159 ~~~l~----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g-~g~~g~~~~~~~~~~--~pdi~  230 (375)
T PRK04260        159 KALVN----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-G-MGRTGKLYAFEHYGI--EPDIF  230 (375)
T ss_pred             HHhcC----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccchhhhHhhCC--CCCEE
Confidence            76663    45789999999999999876    8999999999999999999997 3 23333222 123333  67877


Q ss_pred             EcCCcccccC--CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE-GVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~  400 (514)
                        ||||++++  +.|++++++++.+.+.......  +.+.+++.++++.++++.+..+. .++.++..+.+++.+.+.+.
T Consensus       231 --t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  306 (375)
T PRK04260        231 --TLAKGLANGVPVGAMLAKSSLGGAFGYGSHGS--TFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQ  306 (375)
T ss_pred             --EecccccCCcceEEEEEcHHHHhhcCCCCCCC--CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence              99999986  1299999999888776433333  44678999999999998875333 23333444444444444444


Q ss_pred             hCC-CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        401 QIG-FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       401 ~~g-~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.+ +..+...+.++++++..  ...++.+.+. ++||.+.+.       +.+.+|++++..++++|+++++++++++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~-~~Gi~v~~~-------~~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        307 DKETVTTVRGLGYMIGIETTA--DLSQLVEAAR-DKGLIVLTA-------GTNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             hCCCeeEEeccceEEEEEecC--cHHHHHHHHH-hCCCEEecC-------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            432 22233467788888743  3678999995 899998642       3468999999999999999999999875

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.94  E-value=6.5e-25  Score=226.75  Aligned_cols=218  Identities=21%  Similarity=0.254  Sum_probs=160.0

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                      +++.+++.+.+. .+++++|++++++...|.+.+    +++|+++|++||+++|.||+++ +|+.|..+  ..+..++  
T Consensus       211 ~~~~~~~~i~~~-~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~--a~~~~gv--  285 (443)
T PRK08297        211 ALAQARAAFERH-PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAW--AYQQLGV--  285 (443)
T ss_pred             HHHHHHHHHHhC-CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHH--HHHhcCC--
Confidence            455566666643 457999999999999998765    8999999999999999999998 55554321  1233444  


Q ss_pred             CceEEEcCCcccccCCCeEEEecHHHHHHHHh-h--cCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIGGYIVGTKNFIDTIRS-Y--AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~GG~l~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .+|++  +++|.++. ||++.+++ +.+.... .  ......+++.+++.++++.++|+.+.++.   +.++.+++.+++
T Consensus       286 ~PDiv--~~gK~l~~-~a~l~~~~-i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l  358 (443)
T PRK08297        286 RPDIV--AFGKKTQV-CGIMAGRR-VDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDG---LVENAARQGEYL  358 (443)
T ss_pred             CCCEE--Eecccccc-cceecchH-HHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence            79999  79999965 66665543 2222111 1  11122245789999999999999886554   777788888888


Q ss_pred             HHHHHhC--CCc----cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        396 RNELIQI--GFP----VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       396 ~~~L~~~--g~~----~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      .+.|+++  .++    .+...|.++.+++.+......+.+.++ ++||.+.+.       +...+|+.++..+|++|+++
T Consensus       359 ~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~l~-~~Gvl~~~~-------~~~~lr~~P~l~~t~~eid~  430 (443)
T PRK08297        359 LARLEELAAEFPAVVSNVRGRGLMCAFDLPTTADRDEVIRRLW-EEGVLVLPC-------GERSIRFRPALTVTTEEIDA  430 (443)
T ss_pred             HHHHHHHHHHCCCcceeeeccceEEEEEecCHHHHHHHHHHHH-HCCEEEecC-------CCCeEEEECCccCCHHHHHH
Confidence            8888765  222    234567788888876445668888996 899998642       23579999999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy16848        470 FVTDLLAVWKSL  481 (514)
Q Consensus       470 ~~~~l~~~l~~~  481 (514)
                      ++++++++++++
T Consensus       431 ~l~~l~~~l~~~  442 (443)
T PRK08297        431 AIDALRRALPEV  442 (443)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=2.9e-24  Score=217.54  Aligned_cols=207  Identities=13%  Similarity=0.084  Sum_probs=155.7

Q ss_pred             CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        257 VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                      .++++++++++|+||||.+++   +++|.++|+++++++|+||+|.......  ....+... ..+.+++++||||++|.
T Consensus       140 ~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~-~~~~~i~~~S~SK~~~~  216 (356)
T PRK08056        140 TPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE--TGFIPQLA-DNPHLWVLRSLTKFYAI  216 (356)
T ss_pred             cCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc--hHHHHHhc-cCCCEEEEEechhhccC
Confidence            367899999999999999999   7889999999999999999998332211  11111111 22578999999999997


Q ss_pred             CC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc
Q psy16848        334 IG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH  408 (514)
Q Consensus       334 ~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  408 (514)
                      +|   ||+++ ++++++.+......+    +.+...+.++...++  ......+.++.++++++++.+.|+++ ++.+.+
T Consensus       217 ~G~RiG~~v~~~~~~~~~l~~~~~~~----~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~  290 (356)
T PRK08056        217 PGLRLGYLVNSDDAAVARMRRQQMPW----SINAFAALAGEVILQ--DRAYQQATWQWLAEEGARFYQALCALPLLTVWP  290 (356)
T ss_pred             cchhheeeecCCHHHHHHHHHhCCCC----chhHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC
Confidence            78   99987 467777776543322    456666666666664  23345667888899999999999887 766666


Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.+.++++.++.  +..++++.|+ ++||.+.++..+. ....+++|++++   +.++.++++++|+++++
T Consensus       291 ~~~~~~~~~~~~--~~~~~~~~l~-~~gI~v~~~~~f~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        291 GRANYLFLRCER--PDIDLQRALL-TQRILIRSCANYP-GLDSRYYRVAIR---SAAENERLLAALRNVLT  354 (356)
T ss_pred             CCCcEEEEEcCC--ChHHHHHHHH-HCCeEEEECCCCC-CCCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence            677788887763  2568999996 8999999988542 234579999998   78999999999988753

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.94  E-value=1.2e-24  Score=225.22  Aligned_cols=233  Identities=12%  Similarity=0.069  Sum_probs=168.9

Q ss_pred             ChhHHHHHHhhc--cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccC---
Q psy16848        244 DVNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERD---  314 (514)
Q Consensus       244 d~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~---  314 (514)
                      +.+.+++.+++.  ...+++++++++|+||||.+++   +++|.++|++|++++|+||+|....++. ...++.+..   
T Consensus       183 ~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~  262 (447)
T PLN02607        183 TPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEAR  262 (447)
T ss_pred             CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhc
Confidence            455666666543  2346889999999999999999   7999999999999999999999544332 222222110   


Q ss_pred             C-Cc-cCceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh--hhchHHHHHH
Q psy16848        315 G-QL-HNMDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRA  386 (514)
Q Consensus       315 ~-~~-~~~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~  386 (514)
                      + .. .+..+++.||||.+|.+|   ||+++ +++++..+......   + ..|.+.+.++...|+..  .+..+.+.++
T Consensus       263 ~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~---~-~~s~~~q~~~~~~L~d~~~~~~~l~~~r~  338 (447)
T PLN02607        263 GYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF---T-LVSSQTQHLLASMLSDEEFTENYIRTNRE  338 (447)
T ss_pred             CCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhc---C-CCCHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            0 01 356788999999999778   99998 56676766544321   1 34666777777766531  1245667888


Q ss_pred             HHHHHHHHHHHHHHhCCCccccCCC-cEEEEEeCCC------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        387 KHQDIVAYLRNELIQIGFPVEHTPS-HIIPIKIGNP------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~i~l~~~------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      +++++++.+.+.|++.|+++..+.+ .++++.++..      ....++.++++++.||.+.||..|.. ..++++|++++
T Consensus       339 ~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~-~~~g~fRi~fa  417 (447)
T PLN02607        339 RLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHC-SEPGWFRVCFA  417 (447)
T ss_pred             HHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCC-CCCCEEEEEec
Confidence            8999999999999999988777654 4777887532      12346777887568999999987543 34789999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        460 PFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      . .+++++++++++|.+++++.+
T Consensus       418 ~-~~~~~l~~gl~Ri~~~l~~~~  439 (447)
T PLN02607        418 N-MSEDTLEVALKRIHRFMDRRK  439 (447)
T ss_pred             c-CCHHHHHHHHHHHHHHHHHHH
Confidence            3 468999999999999987653

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=219.67  Aligned_cols=322  Identities=16%  Similarity=0.151  Sum_probs=228.1

Q ss_pred             Cceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccc-cccc
Q psy16848         17 NRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVA-NDST   91 (514)
Q Consensus        17 g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a-~~~~   91 (514)
                      +..++|++.  +.|..+|++++++.+.+.....  ..+    +. ....++++.++++++.+  ..+++++|++. +..+
T Consensus        25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y----~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~   97 (356)
T PRK04870         25 ATGMVKLDAMENPYRLPAELRAELGERLAEVAL--NRY----PD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLL   97 (356)
T ss_pred             CCCceeCcCCCCCCCCCHHHHHHHHHHhhcccc--ccC----CC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHH
Confidence            345777743  4444578999999988764221  111    11 12478889999998854  25777777754 5556


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.++|......++..|++++.++.++.                                      
T Consensus        98 ~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~--------------------------------------  137 (356)
T PRK04870         98 ALACAK--PGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD--------------------------------------  137 (356)
T ss_pred             HHHhcC--CCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCC--------------------------------------
Confidence            656655  9999999999999888777777777665543100                                      


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                              .                                             ..|.+.+++.
T Consensus       138 ------------------------~---------------------------------------------~~d~~~l~~~  148 (356)
T PRK04870        138 ------------------------F---------------------------------------------TLDLPAMLAA  148 (356)
T ss_pred             ------------------------C---------------------------------------------CCCHHHHHHH
Confidence                                    0                                             0134444444


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +..   .+++++++++|+||||.+++.+++.++++..++++|+||+|..... ...  .....  ..+..+++.|||| +
T Consensus       149 ~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~-~~~--~~~~~--~~~~vi~~~S~SK-~  219 (356)
T PRK04870        149 IAE---HRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAG-DSW--LPRLA--RFPNLLVMRTVSK-L  219 (356)
T ss_pred             hhc---CCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcC-cch--HHHHh--hCCCEEEEecchh-h
Confidence            432   3578999999999999999988888887777899999999973221 110  11111  2246899999999 7


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      +.+|   ||+++++++++.+......+    +.+.+.+.++..+++..  +.+++.+++++++++++.+.|+++ ++.+.
T Consensus       220 ~~~GlRiG~~i~~~~~i~~~~~~~~~~----~~~~~~q~~a~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  293 (356)
T PRK04870        220 GLAGLRLGYLAGHPAWIAELDKVRPPY----NVNVLTQATALFALEHV--DVLDAQAAQLRAERTRLAAALAALPGVTVF  293 (356)
T ss_pred             hhHHHhhhhhhCCHHHHHHHHHccCCC----cCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC
Confidence            7767   99999999999887755333    45667777777766532  346677888899999999999987 77665


Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        408 HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       408 ~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      ++.+.++++.++   +..++.+.| +++||.+.++..+. ....+++|++++   +.+++++++++|+++
T Consensus       294 ~~~~~~~~~~~~---~~~~~~~~l-~~~gI~v~~~~~f~-~~~~~~iRis~~---~~~~~~~l~~al~~~  355 (356)
T PRK04870        294 PSAANFILVRVP---DAAAVFDGL-KTRGVLVKNLSGMH-PLLANCLRVTVG---TPEENAQFLAALKAA  355 (356)
T ss_pred             CCCCeEEEEECC---CHHHHHHHH-HHCCEEEEECCCCC-CCCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence            666778888876   356788888 59999999887542 334679999999   799999999999875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.94  E-value=4.3e-24  Score=215.62  Aligned_cols=327  Identities=19%  Similarity=0.163  Sum_probs=221.0

Q ss_pred             CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccchhhccccCCCce
Q psy16848         28 YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTLFTLGKMIPGLH  103 (514)
Q Consensus        28 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l~~l~~~~~gd~  103 (514)
                      +..+|.+.+.+.+  .........+....+..++.+.+++.+...++    .+..+++++||+++..++.++.+  +||+
T Consensus        10 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~g~~   85 (350)
T cd00609          10 FPPPPEVLEALAA--AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN--PGDE   85 (350)
T ss_pred             CCCCHHHHHHHHH--HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC--CCCE
Confidence            3346776666655  22222222222333444444445444444433    33466677778888888888865  8999


Q ss_pred             EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848        104 YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  183 (514)
Q Consensus       104 v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (514)
                      |+++.+.|.+...+++..+.+++.++..+..                                                 
T Consensus        86 vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------------------------------  116 (350)
T cd00609          86 VLVPDPTYPGYEAAARLAGAEVVPVPLDEEG-------------------------------------------------  116 (350)
T ss_pred             EEEcCCCchhHHHHHHHCCCEEEEEeccccc-------------------------------------------------
Confidence            9999999999988887777666554432100                                                 


Q ss_pred             ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEE
Q psy16848        184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV  263 (514)
Q Consensus       184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v  263 (514)
                                                                                  .....++.++....++++++
T Consensus       117 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~v  136 (350)
T cd00609         117 ------------------------------------------------------------GFLLDLELLEAAKTPKTKLL  136 (350)
T ss_pred             ------------------------------------------------------------CCccCHHHHHhhcCccceEE
Confidence                                                                        01100223333445678999


Q ss_pred             EEecCCCCCccccCH---HHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eE
Q psy16848        264 AFETVHSMTGAICPL---KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GY  337 (514)
Q Consensus       264 v~~~~~nptG~~~~l---~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~  337 (514)
                      ++++++||+|..+|.   .+|.++|+++|+++|+|++|+.+..+....... ......+.|++++|++|+++..|   |+
T Consensus       137 ~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~K~~~~~g~~~G~  215 (350)
T cd00609         137 YLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPAL-ALLDAYERVIVLRSFSKTFGLPGLRIGY  215 (350)
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccc-cCcCccCcEEEEeecccccCCcccceEE
Confidence            999999999999994   555689999999999999999544432221100 11113467999999999998434   89


Q ss_pred             EEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc--ccCCCcEE
Q psy16848        338 IVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHII  414 (514)
Q Consensus       338 l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~  414 (514)
                      +++++ ++.+.+.......  +.+.+...+.++...++... ...++.+++++++++++.+.|++.+...  ....+.++
T Consensus       216 i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~  292 (350)
T cd00609         216 LIAPPEELLERLKKLLPYT--TSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFL  292 (350)
T ss_pred             EecCHHHHHHHHHHHHHhc--ccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEE
Confidence            99888 7888887665443  33567777777777777543 5677888999999999999999985443  23345566


Q ss_pred             EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        415 PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       415 ~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      ++.++.......+.+.| +++||.+.++..+.. ....++|++++..  .+|+++++++|+
T Consensus       293 ~~~~~~~~~~~~~~~~l-~~~gi~i~~~~~~~~-~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         293 WLDLPEGDDEEFLERLL-LEAGVVVRPGSAFGE-GGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             EEecCCCChHHHHHHHH-HhCCEEEeccccccc-CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence            77776543444555555 588999987765432 4567999999965  999999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02651 cysteine desulfurase

Probab=99.94  E-value=6.2e-25  Score=223.18  Aligned_cols=316  Identities=17%  Similarity=0.108  Sum_probs=219.0

Q ss_pred             ChhHHHHHHHHHHH-hCCCCC-CcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccc--cCCCceE
Q psy16848         31 PKGGRKCLGEALEK-FGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGK--MIPGLHY  104 (514)
Q Consensus        31 ~~~~~~a~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~--~~~gd~v  104 (514)
                      ++.+.+++.+.+.. ++.... .+.......+..+++++.+++++|.+  ..+|++|+|+++..++..+..  ..+||.|
T Consensus        12 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~v   91 (364)
T PLN02651         12 DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHV   91 (364)
T ss_pred             CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEE
Confidence            57889999888865 222211 11111122466788999999999865  346666677887777655421  2489999


Q ss_pred             EecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeec
Q psy16848        105 ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE  184 (514)
Q Consensus       105 ~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (514)
                      +++..+|+++...+..                                                                
T Consensus        92 l~~~~~h~s~~~~~~~----------------------------------------------------------------  107 (364)
T PLN02651         92 ITTQTEHKCVLDSCRH----------------------------------------------------------------  107 (364)
T ss_pred             EEcccccHHHHHHHHH----------------------------------------------------------------
Confidence            9999999987643321                                                                


Q ss_pred             cccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHHHHHhhccCCCceEE
Q psy16848        185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLTQVLENMDVKIPKLV  263 (514)
Q Consensus       185 ~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v  263 (514)
                                                                   +...|.+++.++. .+.....+.+++..+++++++
T Consensus       108 ---------------------------------------------~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv  142 (364)
T PLN02651        108 ---------------------------------------------LQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALV  142 (364)
T ss_pred             ---------------------------------------------HHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEE
Confidence                                                         1112333333331 111122233333334568999


Q ss_pred             EEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEEEecH
Q psy16848        264 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYIVGTK  342 (514)
Q Consensus       264 v~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l~~~~  342 (514)
                      ++++++|+||.+.|+++|.++|+++|+++++|++++.|..        +.+....++|++++|.||++|+.| |+++.++
T Consensus       143 ~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~--------~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~  214 (364)
T PLN02651        143 SVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI--------PVDVDDLGVDLMSISGHKIYGPKGVGALYVRR  214 (364)
T ss_pred             EEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCc--------ccCcccCCCCEEEechhhhCCCCceEEEEEcC
Confidence            9999999999999999999999999999999999997654        222223478999999999888777 9998887


Q ss_pred             HHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-CCccccC---C--
Q psy16848        343 NFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I-GFPVEHT---P--  410 (514)
Q Consensus       343 ~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~---~--  410 (514)
                      +..+.+.+...+.     ....+.+.....++.++++++.+ ..++++++.+++.+++.+.|++ . ++.+..+   .  
T Consensus       215 ~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~  293 (364)
T PLN02651        215 RPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKR  293 (364)
T ss_pred             CCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccC
Confidence            6655544332211     01235677778888999998854 5588889999999999999986 3 7766553   1  


Q ss_pred             -CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEEeCCCCCHHHHH
Q psy16848        411 -SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       411 -~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~~~~~~t~e~id  468 (514)
                       .+++.+.++. .+..++...|. +  |.++.+..|..+.                ..+.+|+|++.++|++|||
T Consensus       294 ~~~i~~~~~~~-~~~~~~~~~L~-~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        294 YPGTLNLSFAY-VEGESLLMGLK-E--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             cCCEEEEEeCC-CCHHHHHHHhC-C--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence             2377777764 45778888883 4  9999888765431                1369999999999999985

>PRK06148 hypothetical protein; Provisional

Probab=99.94  E-value=1.3e-24  Score=244.12  Aligned_cols=348  Identities=18%  Similarity=0.179  Sum_probs=235.7

Q ss_pred             CCceeeecccCC-CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccccc
Q psy16848         16 SNRVTCRLSSVQ-YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVANDS   90 (514)
Q Consensus        16 ~g~~~~d~~~~~-~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~~~   90 (514)
                      +|+.|+||.++. .+|  ||+|.+++.+|+.+.....   .+   ..+...++.+++++.+.  .+.++|++|||+|++.
T Consensus       622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~---~~---~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~  695 (1013)
T PRK06148        622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNT---RY---LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSL  695 (1013)
T ss_pred             CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcC---Cc---CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHH
Confidence            677777775432 223  8999999999999853221   11   24677889999999874  3678999999999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc--cCCccchhH
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM--TGAICPLKE  168 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  168 (514)
                      |++..                                              +..++++++|.+++.||.  .+.++... 
T Consensus       696 AlklA----------------------------------------------r~~tGr~~ii~~~~~YHG~t~~a~s~s~-  728 (1013)
T PRK06148        696 ALRLA----------------------------------------------RAHTGQRDAIVLDHAYHGTTTELIDLSP-  728 (1013)
T ss_pred             HHHHH----------------------------------------------HHhcCCCeEEEEcCCccCCCcchhhcCc-
Confidence            99433                                              334556667777777761  12111000 


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC---ceeeecchHHHHhhCCCCEEEecCC--
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP---EVAIHASMIQGIRNSSAPKIIYRHN--  243 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~---~v~~~~~~~~~~~~~g~~~~~v~~~--  243 (514)
                      . ..                    ..+.+                ....+   .+..|..+            ..+++  
T Consensus       729 ~-~~--------------------~~~~~----------------~~~~~~~~~~~~p~~~------------~~~~~~~  759 (1013)
T PRK06148        729 Y-KF--------------------NRKGG----------------KGRPDHVEVAEVPDSY------------RGPERWP  759 (1013)
T ss_pred             h-hh--------------------cccCC----------------CCCCCCceEcCCCCcc------------ccCCCCC
Confidence            0 00                    00000                00000   00011111            01111  


Q ss_pred             C-------hhHHHHHHhhc--cCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCC
Q psy16848        244 D-------VNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAG  309 (514)
Q Consensus       244 d-------~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~  309 (514)
                      +       .+.+++.++..  ..+++++|++|+++...|.+.+    +++|+++|++||+++|.||+++ +|+.|.... 
T Consensus       760 ~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~-  838 (1013)
T PRK06148        760 DAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWW-  838 (1013)
T ss_pred             hhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcch-
Confidence            1       13345555432  2356899999999999998887    8999999999999999999997 777764321 


Q ss_pred             ccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        310 IGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       310 ~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                      ..+.+++  .+||+  +++|++|+ |   |.+++++++.+.+.... .+..+++.+++.++++.++|+.+.++.   +.+
T Consensus       839 a~e~~gv--~PDiv--t~gK~lgg-G~Plgav~~~~ei~~~~~~g~-~~~~Tf~gnpla~aaa~a~L~~i~~e~---l~~  909 (1013)
T PRK06148        839 AFETQGV--VPDIV--TMGKPIGN-GHPMGAVVTTREIADSFDNGM-EYFNTFGGNPVSCAIGLAVLDIIEDED---LQR  909 (1013)
T ss_pred             hhhhcCC--Cccee--eecccccC-CcceEEEEEcHHHHhhccCCC-ccccCCCCCHHHHHHHHHHHHHHhhcc---HHH
Confidence            2234555  89999  89999987 5   88889999988775432 123366889999999999999987665   778


Q ss_pred             HHHHHHHHHHHHHHhC--CCcc---ccCCCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        387 KHQDIVAYLRNELIQI--GFPV---EHTPSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                      +.+++.+++++.|+++  ..++   +...|.++.+++...        .....+...++ ++||.+.+..     ...+.
T Consensus       910 ~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g-----~~~~v  983 (1013)
T PRK06148        910 NALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEG-----PHDNV  983 (1013)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccC-----CCCCE
Confidence            8889999999888775  3333   244567888877421        12456778886 8999996421     12478


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        454 IRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +|+.++..+|++++|++++++++++.++
T Consensus       984 lr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        984 LKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             EEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998764

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.94  E-value=2.2e-24  Score=222.29  Aligned_cols=345  Identities=21%  Similarity=0.185  Sum_probs=226.5

Q ss_pred             eeeec-ccCCCCCChhHHHHHHHHH-HHhCCCCCCcCcccCcc--hHHHH-HHHHHHhHcCCCcE-EEEeccccccccch
Q psy16848         19 VTCRL-SSVQYKVPKGGRKCLGEAL-EKFGTGAGGTRNISGNS--LFHEK-LEEDVAKLHQKEAG-LVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~-~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~la~~~~~~~~-i~~~sGt~a~~~~l   92 (514)
                      +.+++ ++.+++ +|++++++.+.+ .+|+.+.++++...+..  +..++ .++.+++++|.+.. ++++|||+|+..++
T Consensus        20 ~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l   98 (402)
T cd00378          20 ETLELIASENFT-SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVY   98 (402)
T ss_pred             hCeeeeccCCcC-CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHH
Confidence            34554 566666 789999998776 46765555555443431  12223 45567889998766 55578999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhh-----hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQG-----IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~-----~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .++.+  |||+|+++++.|.+....     ++..|.++..++...                                   
T Consensus        99 ~~l~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------------------------------  141 (402)
T cd00378          99 FALLE--PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGV-----------------------------------  141 (402)
T ss_pred             HHhcC--CCCEEEEecCccCccccccccccccccceeEEEecCCc-----------------------------------
Confidence            99876  999999999998766432     222332222111000                                   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                     +         ..+                                             ..-|++.
T Consensus       142 ---------------~---------~~~---------------------------------------------~~id~~~  152 (402)
T cd00378         142 ---------------D---------PET---------------------------------------------GLIDYDA  152 (402)
T ss_pred             ---------------C---------ccc---------------------------------------------CCcCHHH
Confidence                           0         000                                             0115566


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +++.+.+   ++++++++++++|+  ...++++|.++|+++|+++|+|++|..|..+...  .. . ... ..|++++|+
T Consensus       153 l~~~i~~---~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~--~~-~-~~~-~~dv~~~s~  222 (402)
T cd00378         153 LEKMALE---FKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGV--FP-N-PLP-GADVVTTTT  222 (402)
T ss_pred             HHHHHHh---CCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhccc--CC-C-ccc-CCcEEEecc
Confidence            6665542   34778888777654  5678999999999999999999998755432111  01 0 112 468999999


Q ss_pred             cccc-cCCCeEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        328 GKAF-GNIGGYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       328 sK~l-g~~GG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      ||++ |+.||+++.++ ++.+.+........++ +.+....+++..++........++.+++++++++++.+.|++.|+.
T Consensus       223 sK~l~G~~gg~i~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  301 (402)
T cd00378         223 HKTLRGPRGGLILTRKGELAKKINSAVFPGLQG-GPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFK  301 (402)
T ss_pred             ccCCCCCCceEEEeccHHHHHHHHHHhCccccC-CchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            9999 55668888776 8888887654333222 2223334444444544433356678888999999999999998887


Q ss_pred             ccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCC---CCCcEEEEEeCC----CCCHHHHHHHHHHHH
Q psy16848        406 VEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVP---VGEEKIRLAPTP----FHTREMIDKFVTDLL  475 (514)
Q Consensus       406 ~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~---~~~~~iRl~~~~----~~t~e~id~~~~~l~  475 (514)
                      +..  ..++++++.+++ ......+.+.| +++||.+.+..+|..+   ....++|++++.    .++++|++.+++.|+
T Consensus       302 ~~~~~~~~~~v~v~~~~~~~~~~~~~~~l-~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~  380 (402)
T cd00378         302 VVSGGTDNHLVLVDLRPKGITGKAAEDAL-EEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIA  380 (402)
T ss_pred             EeecCCCCeEEEEeCCccCCCHHHHHHHH-HHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHH
Confidence            642  345677788763 23345666666 6899999876555442   245789998875    357999999999999


Q ss_pred             HHHHHcC
Q psy16848        476 AVWKSLD  482 (514)
Q Consensus       476 ~~l~~~~  482 (514)
                      +++++-.
T Consensus       381 ~~~~~~~  387 (402)
T cd00378         381 RALKDAE  387 (402)
T ss_pred             HHHhccc
Confidence            9887644

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK07908 hypothetical protein; Provisional

Probab=99.94  E-value=3.4e-24  Score=216.55  Aligned_cols=319  Identities=15%  Similarity=0.126  Sum_probs=217.1

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccc-cccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~~~~   91 (514)
                      .+..++|+..+.  +..++.+.+++.+.+.... .       |+......++++.++++++.+ ..|++++|+ +++..+
T Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-------Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~   91 (349)
T PRK07908         20 AGPGLLDFAVNVRHDTPPEWLRERLAARLGDLA-A-------YPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALL   91 (349)
T ss_pred             CCCCeEEecCCCCCCCCCHHHHHHHHHHhhHhh-c-------CCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence            345688986544  5557789999988776421 1       111233567888888888743 345566655 555555


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.  ..  +++ +++..++|......++..|.+++.++.++                                       
T Consensus        92 ~~--l~--~~~-viv~~P~y~~~~~~~~~~G~~i~~v~~~~---------------------------------------  127 (349)
T PRK07908         92 AR--LR--PRR-AAVVHPSFTEPEAALRAAGIPVHRVVLDP---------------------------------------  127 (349)
T ss_pred             Hh--cC--CCe-EEEeCCCChHHHHHHHHcCCEEEeeccCc---------------------------------------
Confidence            44  33  655 45567777776666666666655443210                                       


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                              ++....+.
T Consensus       128 ------------------------------------------------------------------------~~~~d~~~  135 (349)
T PRK07908        128 ------------------------------------------------------------------------PFRLDPAA  135 (349)
T ss_pred             ------------------------------------------------------------------------ccCcChhH
Confidence                                                                                    11111112


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +    .++++++++++|+||||.+++.++|.++|+ ++.++|+||+|.....+. ..++..   ...+..++++||||.+
T Consensus       136 l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~~~-~~~l~~---~~~~~~i~i~S~SK~~  206 (349)
T PRK07908        136 V----PDDADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVPGE-PESLAG---DDLPGVLVLRSLTKTW  206 (349)
T ss_pred             h----ccCCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhccCC-cccccc---ccCCCEEEEeeccccc
Confidence            2    235789999999999999999999999996 588899999998433222 111211   1224578899999999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH  408 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  408 (514)
                      +.+|   ||+++++++++.+......+    ..+...+.++...++.....++++.+++++++++++.+.|++.++.+..
T Consensus       207 ~l~GlRiG~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~  282 (349)
T PRK07908        207 SLAGLRVGYALGAPDVLARLTRGRAHW----PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVD  282 (349)
T ss_pred             CCccceeeeeecCHHHHHHHHhcCCCC----CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEecc
Confidence            9667   99999999999887765443    3455555555444431112356678888999999999999988877665


Q ss_pred             -CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        409 -TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       409 -~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                       +.+.++++.+++   ..++.+.| +++||.+.++..+. ..+.+++|++++   +++++++++++|++++.
T Consensus       283 p~~g~~~~~~~~~---~~~~~~~l-~~~gI~v~~g~~f~-~~~~~~vRis~~---~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        283 PAAAPFVLVRVPD---AELLRKRL-RERGIAVRRGDTFP-GLDPDYLRLAVR---PRAEVPVLVQALAEILK  346 (349)
T ss_pred             CCCceEEEEECCc---HHHHHHHH-HhCCEEEEECCCCC-CCCCCeEEEEeC---CCccHHHHHHHHHHHHh
Confidence             456688888774   45777777 59999999988643 224679999997   78999999999998765

>PLN02231 alanine transaminase

Probab=99.94  E-value=6.5e-24  Score=223.46  Aligned_cols=339  Identities=15%  Similarity=0.148  Sum_probs=224.4

Q ss_pred             hhHHHHHHHHHHHh-CCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecc-ccccccchhhccccCCCceEEe
Q psy16848         32 KGGRKCLGEALEKF-GTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSC-YVANDSTLFTLGKMIPGLHYIS  106 (514)
Q Consensus        32 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sG-t~a~~~~l~~l~~~~~gd~v~~  106 (514)
                      .++.+...+.+... +.....+....|..++.+.+.+++.+..|.   +..|++|+| ++|+..++.++.. .+||.|++
T Consensus       143 ~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-~~gd~Vli  221 (534)
T PLN02231        143 ADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEKDGILC  221 (534)
T ss_pred             HHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-CCCCEEEE
Confidence            35555555555542 222333444556666666666666655442   234555555 5567777777652 37999999


Q ss_pred             cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848        107 DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  186 (514)
Q Consensus       107 ~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (514)
                      +.+.|......++..|.+++.++.+. +                                                    
T Consensus       222 ~~P~Y~~y~~~~~~~g~~~v~~~l~~-~----------------------------------------------------  248 (534)
T PLN02231        222 PIPQYPLYSASIALHGGTLVPYYLDE-A----------------------------------------------------  248 (534)
T ss_pred             eCCCChhHHHHHHHcCCEEEEEecCc-c----------------------------------------------------
Confidence            99999999988888888877664310 0                                                    


Q ss_pred             cccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC--CCceEEE
Q psy16848        187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV--KIPKLVA  264 (514)
Q Consensus       187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~--~~~~~vv  264 (514)
                             ++++                                             -|.+.+++.+++...  .++++++
T Consensus       249 -------~~~~---------------------------------------------~d~~~Le~~l~~~~~~~~~~k~iv  276 (534)
T PLN02231        249 -------TGWG---------------------------------------------LEISELKKQLEDARSKGITVRALV  276 (534)
T ss_pred             -------cCCC---------------------------------------------CCHHHHHHHHHHHhhcCCCeEEEE
Confidence                   0011                                             155666666654322  2578999


Q ss_pred             EecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC--CCCCCccccC---CC--ccCceEEEcCCcccc-cC
Q psy16848        265 FETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG--EHGAGIGERD---GQ--LHNMDIISGTLGKAF-GN  333 (514)
Q Consensus       265 ~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g--~~~~~~~~~~---~~--~~~~di~~~S~sK~l-g~  333 (514)
                      +++|+||||.+++   +++|+++|++||++||+||+|....+.  ....++....   +.  .....++++||||.+ |.
T Consensus       277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~  356 (534)
T PLN02231        277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGE  356 (534)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccC
Confidence            9999999999999   799999999999999999999954432  2222222111   11  012468889999976 55


Q ss_pred             CC---eEEEe---cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH-------hh--hchHHHHHHHHHHHHHHHHHH
Q psy16848        334 IG---GYIVG---TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI-------LS--SQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       334 ~G---G~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~-------~~--~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      +|   ||+++   ++++++.+.+... .  +...+...+.++..+++.       +.  ..+.+++++.++++++.+.+.
T Consensus       357 pGlRiGy~~~~~~~~~l~~~l~k~~~-~--~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~  433 (534)
T PLN02231        357 CGKRGGYMEVTGFTSDVREQIYKVAS-V--NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDA  433 (534)
T ss_pred             CccceEEEEEecCCHHHHHHHHHHHh-h--hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67   99875   6788888876543 2  224455566666665631       11  112334678899999999999


Q ss_pred             HHhC-CCccccCCCcEEEE-Ee--CCC----------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        399 LIQI-GFPVEHTPSHIIPI-KI--GNP----------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       399 L~~~-g~~~~~~~~~~~~i-~l--~~~----------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      |+++ |+.+..+.|+|+.+ ++  +..          .....++..|+++.||.+.||..+....+..++|+++.  .++
T Consensus       434 L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~--~~~  511 (534)
T PLN02231        434 LNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTIL--PQE  511 (534)
T ss_pred             HhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeC--CCH
Confidence            9988 88887787775443 33  321          11234667777788999999997654445668999996  678


Q ss_pred             HHHHHHHHHHHHHHHHc
Q psy16848        465 EMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~  481 (514)
                      +++++++++|++++++.
T Consensus       512 e~l~eal~RL~~~~~~~  528 (534)
T PLN02231        512 DKIPAIVSRLTEFHKSF  528 (534)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887664

>PLN02721 threonine aldolase

Probab=99.94  E-value=1.9e-24  Score=218.98  Aligned_cols=329  Identities=18%  Similarity=0.217  Sum_probs=215.9

Q ss_pred             ceeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcc
Q psy16848         18 RVTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLG   96 (514)
Q Consensus        18 ~~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~   96 (514)
                      .+.+||.++... ..|.+.+++.+.  ..+.  .  .  .++.+...++++.++++++.+.+++++|||+++..++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~--~--~--~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~   76 (353)
T PLN02721          5 SRVVDLRSDTVTKPTDAMRAAMANA--EVDD--D--V--LGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHC   76 (353)
T ss_pred             hhhhhhhcccccCCCHHHHHHHHhc--cCCC--c--c--cCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHc
Confidence            356788665544 356777776543  1111  1  1  12345578999999999999889999999999877776654


Q ss_pred             ccCCCceEEecCccchhhhhh---hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         97 KMIPGLHYISDAGNHASMIQG---IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        97 ~~~~gd~v~~~~~~h~~~~~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      . .+||.|+++.++|.++...   ....|.+++.++.++..                                       
T Consensus        77 ~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---------------------------------------  116 (353)
T PLN02721         77 D-VRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDG---------------------------------------  116 (353)
T ss_pred             c-CCCCeEEEcCccceehhcccchhhhcCceeEecCCCcCC---------------------------------------
Confidence            1 2899999999999776642   33445555444321000                                       


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                          ..|.+.+++.++
T Consensus       117 --------------------------------------------------------------------~~d~~~l~~~i~  128 (353)
T PLN02721        117 --------------------------------------------------------------------TMDLDAIEAAIR  128 (353)
T ss_pred             --------------------------------------------------------------------CcCHHHHHHHHH
Confidence                                                                                014455555554


Q ss_pred             hcc---CCCceEEEEecC-CCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        254 NMD---VKIPKLVAFETV-HSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       254 ~~~---~~~~~~vv~~~~-~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +..   .+++++++++++ +||+|.++|   +++|.++|+++|+++|+|++|.++.....+  . .......+.|.++.|
T Consensus       129 ~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~--~-~~~~~~~~~d~~~~s  205 (353)
T PLN02721        129 PKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALG--V-PVHRLVKAADSVSVC  205 (353)
T ss_pred             hccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhC--C-CHHHHhhhCCEEEEe
Confidence            321   146788888774 678999888   789999999999999999998754321111  1 111112257888889


Q ss_pred             CcccccCCC-eEEEecHHHHHHHHhhcCceEeccCCcH--HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        327 LGKAFGNIG-GYIVGTKNFIDTIRSYAAGFIFTTSLPP--TVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       327 ~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      +||+++++. ++++.++++++.+......+  ....+.  ..++++..+++..    .+ ..++..++.+++.+.|+++ 
T Consensus       206 ~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~----~~-~~~~~~~~~~~l~~~L~~~~  278 (353)
T PLN02721        206 LSKGLGAPVGSVIVGSKSFIRKAKRLRKTL--GGGMRQVGVLAAAALVALQEN----VP-KLEDDHKKAKLLAEGLNQIK  278 (353)
T ss_pred             cccccCCceeeEEecCHHHHHhHHHHHHhc--CCCeehhHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhCC
Confidence            999998644 45778888888766544322  112222  2222333333322    22 2334456778899999887 


Q ss_pred             CCcc--ccCCCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        403 GFPV--EHTPSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       403 g~~~--~~~~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++.+  ..+.+++++++++..  ....++++.|. ++||.+.++.       ..++|++++..++++|+++++++|++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~~~-------~~~lR~~~~~~~~~~~i~~~~~~l~~~~  350 (353)
T PLN02721        279 GLRVNVAAVETNIVYFDITDGSRITAEKLCKSLE-EHGVLLMPGN-------SSRIRVVTHHQISDSDVQYTLSCFQQAA  350 (353)
T ss_pred             CcEEecCCccceEEEEEccCCccccHHHHHHHHH-hCCcEEecCC-------CceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence            6643  344566788887643  35778999995 9999998652       4589999998899999999999999877


Q ss_pred             HH
Q psy16848        479 KS  480 (514)
Q Consensus       479 ~~  480 (514)
                      ..
T Consensus       351 ~~  352 (353)
T PLN02721        351 LT  352 (353)
T ss_pred             hc
Confidence            54

>KOG1404|consensus

Probab=99.94  E-value=8.7e-25  Score=208.16  Aligned_cols=340  Identities=18%  Similarity=0.162  Sum_probs=240.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEeccccccccchhhccc-cCCCceEEec
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVANDSTLFTLGK-MIPGLHYISD  107 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~~~~l~~l~~-~~~gd~v~~~  107 (514)
                      ||+|.+++.+|+.++-.....   +  ..+...++++.|.+.+-  .+.++|++||++||+.+++.... ++.-|.|...
T Consensus        68 hP~v~~a~~kQl~~l~H~t~~---~--~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r  142 (442)
T KOG1404|consen   68 HPDVVAAAVKQLKKLYHTTSG---Y--LNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARR  142 (442)
T ss_pred             ChHHHHHHHHhhhhhEEeecc---c--cCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEee
Confidence            899999999999764332211   1  23556777777777763  45578889999999998865432 5677888889


Q ss_pred             CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848        108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       108 ~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      ..+|.....++.+.+...+.++-.-                   .+.|++++   ++                       
T Consensus       143 ~~YHG~t~~t~glt~~~~~k~~~~~-------------------~~~~~~~~---~~-----------------------  177 (442)
T KOG1404|consen  143 NSYHGNTLYTLGLTGLSPWKQNFPG-------------------VASGVHHT---MN-----------------------  177 (442)
T ss_pred             ccccCCchhhcccccCCcccccCCC-------------------CCCccccc---CC-----------------------
Confidence            9999999988888887776543210                   01122221   01                       


Q ss_pred             ccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEec
Q psy16848        188 VGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET  267 (514)
Q Consensus       188 ~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~  267 (514)
                                                         |++|...+  .|.+--.....-.+.+++.+.....++.++++.++
T Consensus       178 -----------------------------------Pdp~r~~~--~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEt  220 (442)
T KOG1404|consen  178 -----------------------------------PDPYRGIF--GGSNEEEASDRYAKELEDLILYDGPETVAAFIAET  220 (442)
T ss_pred             -----------------------------------CCcccccC--CCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeeh
Confidence                                               11111000  00000000001124455555555556788999999


Q ss_pred             CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEE
Q psy16848        268 VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIV  339 (514)
Q Consensus       268 ~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~  339 (514)
                      ++...|.+.+    +++..++|+++|.++|.||+++ +|++| +.+++- ..++  -|||+  |+.|.+|. |   |+++
T Consensus       221 IqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG-~~wgfe-~h~v--~PDIv--TmAKgiGn-G~Pl~AVv  293 (442)
T KOG1404|consen  221 IQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG-HMWGFE-SHGV--VPDIV--TMAKGIGN-GFPLGAVV  293 (442)
T ss_pred             hccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc-cccccc-ccCC--CccHH--HHHhhccC-CCcceeee
Confidence            9999999877    8999999999999999999999 88887 443443 3333  79999  99999988 5   8899


Q ss_pred             ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCccc---cCCCcEE
Q psy16848        340 GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPVE---HTPSHII  414 (514)
Q Consensus       340 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~---~~~~~~~  414 (514)
                      ..+++.+.+.+... +.++++.+|..++++.++|+.++++.   +.++..+...+|++.|.++  +.+++   +..|.|+
T Consensus       294 tt~EIa~v~~~~~~-~fnTyggnP~a~avg~aVL~Vikee~---LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~  369 (442)
T KOG1404|consen  294 TTPEIADVLNQKSS-HFNTYGGNPVACAVGLAVLKVIKEEN---LQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLML  369 (442)
T ss_pred             cCHHHHHHHHhccc-cccccCCCchhHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEE
Confidence            99999998877653 22366899999999999999997666   7888899999999999887  55554   3456677


Q ss_pred             EEEeCCCc---------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        415 PIKIGNPA---------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       415 ~i~l~~~~---------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      .+++-+..         ....+.+.+ ++.|+.+..+..     ..+.+|++++...|++|+|.+++..
T Consensus       370 GvE~V~dk~~~~pp~~~~~~~i~~~c-ke~Gvlvg~g~i-----~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  370 GVELVSDKSEPKPPATAEGAVIGEQC-KELGVLVGKGGI-----HGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             EEEEecccCCCCCcchHHHHHHHHHH-HHhCeeeecccc-----cceEEEecCCeeccHHHHHHHHHHH
Confidence            77764321         234677888 599999954443     2349999999999999998887766

>PRK09265 aminotransferase AlaT; Validated

Probab=99.94  E-value=7.8e-24  Score=218.11  Aligned_cols=340  Identities=13%  Similarity=0.121  Sum_probs=215.1

Q ss_pred             hcCCceeeecccCC-----CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc------CC-CcEEEE
Q psy16848         14 HKSNRVTCRLSSVQ-----YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH------QK-EAGLVF   81 (514)
Q Consensus        14 ~~~g~~~~d~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~-~~~i~~   81 (514)
                      ..+|...+|+..++     +-..+++.+++.+.+...    ..+....|.    .++++.+++++      +. +..+++
T Consensus        29 ~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~----~~Y~~~~G~----~~lr~~ia~~~~~~~~~~~~~~~i~~  100 (404)
T PRK09265         29 EEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTA----QGYSDSKGL----FSARKAIMQYYQQKGIPDVDVDDIYI  100 (404)
T ss_pred             HHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcC----CCCCCCCCc----HHHHHHHHHHHhccCCCCCCcccEEE
Confidence            34667788886432     123567777777655431    112222233    35555555554      22 234556


Q ss_pred             ecccc-ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         82 TSCYV-ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        82 ~sGt~-a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      ++|++ ++..++.++..  +||.|+++.++|......++..|.+++.++.+..+                     .|   
T Consensus       101 t~G~~~~l~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~---------------------~~---  154 (404)
T PRK09265        101 GNGVSELIVMAMQALLN--NGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEA---------------------GW---  154 (404)
T ss_pred             eCChHHHHHHHHHHhCC--CCCEEEEeCCCCcChHHHHHHcCCEEEEEeccccc---------------------CC---
Confidence            66654 56677777765  99999999999988877776666665543221000                     00   


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (404)
T PRK09265        155 --------------------------------------------------------------------------------  154 (404)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQ  316 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~  316 (514)
                       ..|.+.+++.+    .++++++++++|+||||.+++   +++|.++|+++|+++|+||+|....+. ....++....  
T Consensus       155 -~~d~~~l~~~~----~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--  227 (404)
T PRK09265        155 -FPDLDDIRSKI----TPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLA--  227 (404)
T ss_pred             -CCCHHHHHHhc----cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcC--
Confidence             01333333333    346889999999999999999   899999999999999999999843332 2221222221  


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEe--cHH----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh-chHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVG--TKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS-QEGVELRA  386 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~--~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~  386 (514)
                      .....++++||||.+|.+|   ||++.  +++    +++.+.... ..  ..+.+.+.+.++.++|..... ....+..+
T Consensus       228 ~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  304 (404)
T PRK09265        228 PDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLA-SM--RLCANVPAQHAIQTALGGYQSINELILPGG  304 (404)
T ss_pred             CCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHh-cc--ccCCCcHHHHHHHHHhcCchhHHHHHHHHH
Confidence            1135688899999998778   99985  343    334333221 11  225667777777777742210 01111224


Q ss_pred             HHHHHHHHHHHHHHhC-CCccccCCC-cEEEEEeCCCc----cHHH-HHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        387 KHQDIVAYLRNELIQI-GFPVEHTPS-HIIPIKIGNPA----LNTK-ICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~i~l~~~~----~~~~-~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      ++.++++.+.+.|++. ++.+..+.+ .++++.++...    +..+ +.+.+ .++||.+.|+..+.. ...+++|+++.
T Consensus       305 ~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l-~~~gv~v~pg~~F~~-~~~~~~Ri~~~  382 (404)
T PRK09265        305 RLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLL-LQEKVLLVQGTGFNW-PEPDHFRIVTL  382 (404)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccCCCCHHHHHHHHH-HhCCEEEECchhhCC-CCCCeEEEEeC
Confidence            5677788888999887 777666654 46677776421    2334 44555 699999999886532 24679999996


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHc
Q psy16848        460 PFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~~  481 (514)
                        .+++++++++++|+++++..
T Consensus       383 --~~~e~l~~~l~rl~~~l~~~  402 (404)
T PRK09265        383 --PRVDDLEEAIGRIGRFLSGY  402 (404)
T ss_pred             --CCHHHHHHHHHHHHHHHHHh
Confidence              67899999999999988754

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.94  E-value=2.9e-24  Score=221.88  Aligned_cols=347  Identities=18%  Similarity=0.175  Sum_probs=233.9

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~   88 (514)
                      .+|++++|+.++   .++|  ||++.+++.+++++ +...      +...+...++.+++++.+ +.++++|++||++|+
T Consensus        47 ~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~-~~~~------~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~  119 (426)
T PRK00062         47 VDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK-GLSF------GAPTELEVELAELVIELVPSIEMVRMVNSGTEAT  119 (426)
T ss_pred             CCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh-CCcC------CCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHH
Confidence            367788888654   4444  89999999999987 3211      123466778999998876 567789999999999


Q ss_pred             ccchhhcccc-CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGKM-IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~~-~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +.+++..... ++.+.|..+..+|......+...+.....+...        +   ....+.                  
T Consensus       120 e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~--------~---~~~~~~------------------  170 (426)
T PRK00062        120 MSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLP--------D---SPGVPE------------------  170 (426)
T ss_pred             HHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCC--------C---CCCCCc------------------
Confidence            9999875542 234455556666766543433332211100000        0   000000                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                      ........++++|.+.
T Consensus       171 ----------------------------------------------------------------~~~~~~~~~~~~d~~~  186 (426)
T PRK00062        171 ----------------------------------------------------------------DFAKHTLTAPYNDLEA  186 (426)
T ss_pred             ----------------------------------------------------------------ccccceEEcCCCCHHH
Confidence                                                                            0001234456678888


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+.+. .+++++|+++++++.+|.+.+    +++|+++|++||+++|+||+|+-...|..  +..+..+.  .+|++
T Consensus       187 l~~~i~~~-~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~--~~~~~~~~--~pDi~  261 (426)
T PRK00062        187 VEELFEEY-GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALG--GAQGYYGV--TPDLT  261 (426)
T ss_pred             HHHHHHhC-CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCc--cHHHHhCC--CcchH
Confidence            88888653 356899999999999999988    89999999999999999999982233321  22333443  57876


Q ss_pred             EcCCcccccC--CCeEEEecHHHHHHHHhhcCceEe-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAGFIF-TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                        +++|.++.  +.|++++++++.+.+......+.+ +.+.+++.++++.++|+.+.++   +..++++++.+++++.|+
T Consensus       262 --~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~  336 (426)
T PRK00062        262 --TLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLK  336 (426)
T ss_pred             --hhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHH
Confidence              99999985  238888999999888643222222 3478999999999999988554   366677777777777666


Q ss_pred             hC----CCcc-ccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        401 QI----GFPV-EHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       401 ~~----g~~~-~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      ++    ++.. ....|.++.+.+.+.             .....+.+.|+ ++||.+.+..+       +.++++  ..+
T Consensus       337 ~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~~-------~~~~~~--~~~  406 (426)
T PRK00062        337 EAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQF-------EAGFVS--AAH  406 (426)
T ss_pred             HHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCCc-------Cceeee--ccC
Confidence            43    4433 345677888776431             12357888886 89999975322       245665  468


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      |++|+++++++++++++++
T Consensus       407 t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        407 TDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998764

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.94  E-value=5.5e-24  Score=219.25  Aligned_cols=354  Identities=18%  Similarity=0.160  Sum_probs=239.2

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~   88 (514)
                      +|++++||.++.   ++|  ||++.+++.+++++.+......    -..+...++.++++++++.  ++++|++||++|+
T Consensus        43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~----~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~  118 (427)
T TIGR00508        43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGG----FTHKPAIELCQKLVKMTPNALDCVFLADSGSVAV  118 (427)
T ss_pred             CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccc----cCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHH
Confidence            678888886543   555  7999999999999865432211    1235567888888888743  5789999999999


Q ss_pred             ccchhhcccc-------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         89 DSTLFTLGKM-------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        89 ~~~l~~l~~~-------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +.+++.....       ++...|..+..+|..+..++...+........            .....+.....        
T Consensus       119 e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~------------~~~~~~~~~~~--------  178 (427)
T TIGR00508       119 EVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSL------------YKGYLPEQIFA--------  178 (427)
T ss_pred             HHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccccccc------------ccccCCCCeEc--------
Confidence            9999865421       23456777788888777666555432110000            00000000000        


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                   +.+...    .   ...+.
T Consensus       179 -------------------------------------------------------------~~p~~~----~---~~~~~  190 (427)
T TIGR00508       179 -------------------------------------------------------------PAPQNR----F---DEEWN  190 (427)
T ss_pred             -------------------------------------------------------------CCCCcc----c---cchhH
Confidence                                                                         000000    0   00001


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCC
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDG  315 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~  315 (514)
                      .++++.+++.+.+. .++.++|+++++ ++..|...+    +++|+++|++||+++|+||+++ | +|+.|.++ .+..+
T Consensus       191 ~~~~~~l~~~l~~~-~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~t-G-~Gr~G~~~~~~~~~  267 (427)
T TIGR00508       191 EEAITPLAKLMELH-SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIAT-G-FGRTGKLFACEHAG  267 (427)
T ss_pred             HHHHHHHHHHHHhc-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCCccchhhhcC
Confidence            22556677777643 346889999997 777777654    8999999999999999999996 4 24444432 23444


Q ss_pred             CccCceEEEcCCcccccC---CCeEEEecHHHHHHHHhhcC-c--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAA-G--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~-~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      +  .+|++  +++|++++   +.+.++.++++.+.+..... .  ...++..+++.++++.++++.+.++.   ..++++
T Consensus       268 v--~pDi~--~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~---~~~~~~  340 (427)
T TIGR00508       268 V--VPDIL--CVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGE---WQKQVS  340 (427)
T ss_pred             C--CCCEE--EechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHH
Confidence            4  78988  68999964   12667888888888864321 1  11244678999999999999886554   678889


Q ss_pred             HHHHHHHHHHHhCCC-cc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHH
Q psy16848        390 DIVAYLRNELIQIGF-PV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE  465 (514)
Q Consensus       390 ~~~~~l~~~L~~~g~-~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e  465 (514)
                      ++.+++++.|++++. +.   +...+.++.+.+.+......+.+.|+ ++||.+.+.        .+.+|++++..+|++
T Consensus       341 ~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~-~~Gv~~~~~--------~~~l~~~ppl~~t~~  411 (427)
T TIGR00508       341 AIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFV-EQGVWIRPF--------GKLIYVMPPYIITTE  411 (427)
T ss_pred             HHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHH-HCCeEEEec--------CCEEEEECCCCCCHH
Confidence            999999999988732 21   22357788888865555678889996 999999642        137999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy16848        466 MIDKFVTDLLAVWKS  480 (514)
Q Consensus       466 ~id~~~~~l~~~l~~  480 (514)
                      |++++++++++++++
T Consensus       412 ~id~~~~~l~~~l~~  426 (427)
T TIGR00508       412 QLQKLTAALIEALHE  426 (427)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK03321 putative aminotransferase; Provisional

Probab=99.94  E-value=2.8e-24  Score=217.47  Aligned_cols=319  Identities=18%  Similarity=0.161  Sum_probs=218.8

Q ss_pred             eeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-EEEEeccccc-cccchhh
Q psy16848         19 VTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-GLVFTSCYVA-NDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~i~~~sGt~a-~~~~l~~   94 (514)
                      .++|+..+  .+...|.+.+++.+.+.... .       ++ .....++++.++++++.+. .+++++|+++ +..++.+
T Consensus        23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~-------y~-~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~   93 (352)
T PRK03321         23 GAIKLSSNETPFGPLPSVRAAIARAAAGVN-R-------YP-DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQA   93 (352)
T ss_pred             cceeccCCCCCCCCCHHHHHHHHHHHHhcC-c-------CC-CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHH
Confidence            46788654  33346788888887765321 1       11 1236788999999988643 4667777765 4555555


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      +.+  +||.|+++.+.|......++..|.+++.++.+. +                                        
T Consensus        94 ~~~--~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~-~----------------------------------------  130 (352)
T PRK03321         94 TAG--PGDEVIFAWRSFEAYPILVQVAGATPVQVPLTP-D----------------------------------------  130 (352)
T ss_pred             hcC--CCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCC-C----------------------------------------
Confidence            655  999999998887666555555555554433210 0                                        


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                                                                        ...+.+.+++.+  
T Consensus       131 ------------------------------------------------------------------~~~~~~~l~~~~--  142 (352)
T PRK03321        131 ------------------------------------------------------------------HTHDLDAMAAAI--  142 (352)
T ss_pred             ------------------------------------------------------------------CCCCHHHHHHhh--
Confidence                                                                              001334444433  


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                        .++++++++++|+||||.++|.+++.++|++  +++++|+||+|.....+........... ..+..++++||||.+|
T Consensus       143 --~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g  219 (352)
T PRK03321        143 --TDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR-DHPNVVVLRTFSKAYG  219 (352)
T ss_pred             --ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh-hCCCEEEEecchHHhh
Confidence              3467899999999999999999999999988  5999999999984433221111111111 1246799999999999


Q ss_pred             CCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        333 NIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       333 ~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      .+|   ||+++++++++.+......    .+.+.+.+.++.+++...  +...+..++..+.++.+.+.|++.++.+.++
T Consensus       220 ~~GlRiG~~v~~~~~~~~~~~~~~~----~~~s~~~q~~a~~~l~~~--~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~  293 (352)
T PRK03321        220 LAGLRVGYAVGHPEVIAALRKVAVP----FSVNSLAQAAAIASLAAE--DELLERVDAVVAERDRVRAALRAAGWTVPPS  293 (352)
T ss_pred             hHHHhhhhhcCCHHHHHHHHHhcCC----CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCccCCC
Confidence            667   9999999999998865432    256778887777777532  2333444555566678889998888766555


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .+.++++.++.  ...++++.| +++||.+.+.       +..++|++++   +.+++++++++|++++.
T Consensus       294 ~g~~i~i~l~~--~~~~~~~~l-~~~gI~v~~~-------~~~~iRi~~~---~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        294 QANFVWLPLGE--RTADFAAAA-AEAGVVVRPF-------AGEGVRVTIG---APEENDAFLRAARAWRA  350 (352)
T ss_pred             CCCEEEEeCCC--CHHHHHHHH-HHCCEEEEcc-------CCCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence            67788887753  367899998 5899999852       1346999997   89999999999998754

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.94  E-value=2e-24  Score=223.49  Aligned_cols=377  Identities=16%  Similarity=0.117  Sum_probs=249.7

Q ss_pred             cCCceeeecccCC----CCCCh---hHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSVQ----YKVPK---GGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~~----~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a   87 (514)
                      ..|..++++...+    ++.+.   .+.+++.+++.. |..      .|+......++++.++++++.+++++++||++|
T Consensus        33 ~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~-g~~------~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A  105 (460)
T PRK13238         33 EAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMR-GDE------AYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAA  105 (460)
T ss_pred             HcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHh-CCc------ccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHH
Confidence            3566788886544    33333   477777777764 211      122234568899999999999999999999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.++.+  ||| |+++.+.|......+..+|++++.++.......       ..                      
T Consensus       106 ~~~~~~all~--pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~-------~~----------------------  153 (460)
T PRK13238        106 EQILFPVLIK--KGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDT-------GS----------------------  153 (460)
T ss_pred             HHHHHHHhCC--CCC-EEccCCcccchHHHHHHcCCEEEEEeccccccc-------cc----------------------
Confidence            9999888866  999 888888777777667778887775543100000       00                      


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                               ..+.                                           -..-|++.
T Consensus       154 -------------------------~~~f-------------------------------------------~g~id~e~  165 (460)
T PRK13238        154 -------------------------RHPF-------------------------------------------KGNFDLEK  165 (460)
T ss_pred             -------------------------cccc-------------------------------------------cCCcCHHH
Confidence                                     0000                                           00126677


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCc-cccC---HHHHHHHHHHcCCEEEEecccccc-c-cC------CCCCCccccC-
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTG-AICP---LKELCEVSHQHGALTFVDEVHAVG-L-YG------EHGAGIGERD-  314 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG-~~~~---l~~l~~l~~~~gv~li~Dea~~~g-~-~g------~~~~~~~~~~-  314 (514)
                      +++.+.+...+++++|++++++||+| .+++   +++|.++|++||+++|+|+++..+ . +.      ..+.++.+.. 
T Consensus       166 Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~  245 (460)
T PRK13238        166 LEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAR  245 (460)
T ss_pred             HHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhh
Confidence            77777655446799999999999997 7777   689999999999999999988632 1 11      1111111110 


Q ss_pred             CCccCceEEEcCCcccc-cCCCeEEEec-HHHHHHHHhhc---CceEeccC-CcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAF-GNIGGYIVGT-KNFIDTIRSYA---AGFIFTTS-LPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~l-g~~GG~l~~~-~~~~~~l~~~~---~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      ....-.|++++|.+|.. ++.||+++.+ +++.+.++...   .++. +.+ .+...+.|+..+|+...++.   ..+..
T Consensus       246 ~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~-t~~g~~~~~~~Ala~~l~e~~~~~---~~~~~  321 (460)
T PRK13238        246 EMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFP-TYGGLAGRDMEALAVGLYEGMDED---YLAYR  321 (460)
T ss_pred             hhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcc-cccCcHHHHHHHHHhhHHHhhChH---HHHHH
Confidence            00124789999999965 4457888877 68888887653   1221 223 34444566665665432222   33333


Q ss_pred             HHHHHHHHHHHHhCCCccccCCCc-EEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCC----C-----
Q psy16848        389 QDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPV----G-----  450 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----~-----  450 (514)
                      .+++++|.+.|++.|+++..+.+. ++.+.+..        .....+++.+|+++.||.+.++..+..+.    +     
T Consensus       322 ~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~  401 (460)
T PRK13238        322 IGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPA  401 (460)
T ss_pred             HHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCC
Confidence            446799999999999999877665 44444432        11357899999999999999877433332    1     


Q ss_pred             -CcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCccCCcchhhHhHHHHHHHH
Q psy16848        451 -EEKIRLAPTP-FHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILF  502 (514)
Q Consensus       451 -~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  502 (514)
                       ...+|++++. ..|.++++.++++|+++.++-....+..--.+.+++++|.+.
T Consensus       402 ~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~f~~~  455 (460)
T PRK13238        402 PAELLRLAIPRRVYTQSHMDYVAEALKAVKENRESIKGLRFTYEPPVLRHFTAR  455 (460)
T ss_pred             ccceEEEecccccCCHHHHHHHHHHHHHHHHhHhhcCCeEEeecCccceeeeee
Confidence             4799999984 458999999999999988765543333344677888766554

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=4.9e-24  Score=216.07  Aligned_cols=320  Identities=18%  Similarity=0.153  Sum_probs=217.1

Q ss_pred             CCceeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEeccc-cccccc
Q psy16848         16 SNRVTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~~~~   91 (514)
                      .+...+|+..+  .+...|.+.+++.+.+... ..+       +. ....++++.++++++.+ ..+++++|+ +++..+
T Consensus        28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~Y-------~~-~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~   98 (357)
T PRK14809         28 DPDDLVKLSSNENPHGPSPAAVEAIREAAERV-HSY-------PK-ASHADLTAALADRWDVSPEQVWLANGGDGALDYL   98 (357)
T ss_pred             CccceeEecCCCCCCCCCHHHHHHHHHHHhhh-hcC-------CC-CCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHH
Confidence            34567888653  3445778888887776531 111       11 12457888888888743 345565554 567777


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.++|.......+..|..++.++...                                       
T Consensus        99 ~~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~---------------------------------------  137 (357)
T PRK14809         99 ARAMLD--PGDTVLVPDPGFAYYGMSARYHHGEVREYPVSK---------------------------------------  137 (357)
T ss_pred             HHHhcC--CCCEEEEeCCChHHHHHHHHHcCCeEEEEeccc---------------------------------------
Confidence            777765  999999999988765544444554444332100                                       


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                            .+++....+.
T Consensus       138 ----------------------------------------------------------------------~~~~~~~~~~  147 (357)
T PRK14809        138 ----------------------------------------------------------------------ADDFEQTADT  147 (357)
T ss_pred             ----------------------------------------------------------------------CcCCCcCHHH
Confidence                                                                                  0112211222


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      +.+.. ++++++++++||||||.+++.+++.++++..  ++++|+||+|........   ...... ..+..++++||||
T Consensus       148 ~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~---~~~~~~-~~~~vi~~~SfSK  222 (357)
T PRK14809        148 VLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPS---AVALVE-ERDDVAVLRTFSK  222 (357)
T ss_pred             HHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCch---hHHHHh-hCCCEEEEecchh
Confidence            22221 2478999999999999999977777776654  789999999994332111   111111 2256799999999


Q ss_pred             cccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848        330 AFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV  406 (514)
Q Consensus       330 ~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  406 (514)
                      .+|.+|   ||+++++++++.+.+....+    ..+...+.++.++++  ...++++.++.++++++++.+.|.+..+  
T Consensus       223 ~~~~~GlRiG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~--  294 (357)
T PRK14809        223 AYGLAGLRLGYAVVPEEWADAYARVNTPF----AASELACRAGLAALD--DDEHVERTVETARWAREYIREELDAPTW--  294 (357)
T ss_pred             HhcCcchhheeeecCHHHHHHHHHhCCCC----CCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHhcCccC--
Confidence            999778   99999999999887754322    567777777777775  2445667788888888888888866432  


Q ss_pred             ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       407 ~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                       ++.+.+++++++   +..++++.| .++||.+.++..+..   .+++|++++   +++++++++++|+++++
T Consensus       295 -~~~g~f~~~~~~---~~~~~~~~l-~~~gv~v~~g~~f~~---~~~iRls~~---~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        295 -ESAGNFVLAEVG---DASAVAEAA-QERGVIVRDCTSFGL---PECIRITCG---TREETERAVEVLNEVLA  356 (357)
T ss_pred             -CCCCCEEEEECC---CHHHHHHHH-HHCCEEEEECccCCC---CCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence             456778888775   367888888 489999999986532   469999987   57899999999998764

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.94  E-value=4e-24  Score=214.18  Aligned_cols=273  Identities=17%  Similarity=0.193  Sum_probs=197.3

Q ss_pred             HHHHHHHHHhHcCCC-cEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHH
Q psy16848         62 HEKLEEDVAKLHQKE-AGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  140 (514)
Q Consensus        62 ~~~~~~~la~~~~~~-~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l  140 (514)
                      ..+++++++++++.+ ..+++++|+++.+.++..+..  +| .|++..+.|......++..|.+++.++  |++.     
T Consensus        49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~--~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~--d~~~-----  118 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLA--PG-RVLVLAPTYSEYARAWRAAGHEVVELP--DLDR-----  118 (330)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC--CC-eEEEeCCCcHHHHHHHHHcCCEEEEeC--CHHH-----
Confidence            388999999999864 567788887765555545543  77 588888888887766666665555443  3333     


Q ss_pred             HhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCce
Q psy16848        141 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEV  220 (514)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v  220 (514)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (330)
T TIGR01140       119 --------------------------------------------------------------------------------  118 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecc
Q psy16848        221 AIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       221 ~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea  297 (514)
                                                 +++.+     ++++++++++|+||||.+++   +++|.++|+++|+++|+||+
T Consensus       119 ---------------------------l~~~~-----~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~  166 (330)
T TIGR01140       119 ---------------------------LPAAL-----EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEA  166 (330)
T ss_pred             ---------------------------HHhhc-----ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECc
Confidence                                       33332     12568888999999999999   77888999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      |.......   ++....+ ..+.+++++||||.+|.+|   ||+++++++++.+......+    +.+.+.+.++...++
T Consensus       167 y~~~~~~~---~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~~----~~s~~~q~~~~~~l~  238 (330)
T TIGR01140       167 FIDFTPDA---SLAPQAA-RFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALGPW----TVNGPARAAGRAALA  238 (330)
T ss_pred             ccccCCcc---chhhHhc-cCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCCCC----CchHHHHHHHHHHHh
Confidence            98433221   1211111 2367899999999999767   99999999999888765433    456777777777776


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhCC-CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQIG-FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                      .  ....++.+++++++++++.+.|++.+ +.+.++.+.++++.+++   ..++++.|+ ++||.+.++..+. ....++
T Consensus       239 ~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~---~~~l~~~l~-~~gi~v~pg~~f~-~~~~~~  311 (330)
T TIGR01140       239 D--TAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVRTPD---AAALHEALA-RRGILIRDFDNFP-GLDPRY  311 (330)
T ss_pred             c--hHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEcCC---HHHHHHHHH-HCCEEEEECCCCC-CCCCCE
Confidence            2  23446778999999999999999986 55545556677777653   568999996 7999999998753 224579


Q ss_pred             EEEEeCCCCCHHHHHHHHHHH
Q psy16848        454 IRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l  474 (514)
                      +|++++  ...++ ++++++|
T Consensus       312 iRi~~~--~~~~~-~~~~~~l  329 (330)
T TIGR01140       312 LRFALP--TDEEN-DRLEEAL  329 (330)
T ss_pred             EEEEec--CHHHH-HHHHHhh
Confidence            999998  23344 8877765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>KOG0259|consensus

Probab=99.93  E-value=1e-23  Score=200.09  Aligned_cols=321  Identities=13%  Similarity=0.139  Sum_probs=241.5

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--------CCcEEEEeccccccccchhhccccCCCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--------KEAGLVFTSCYVANDSTLFTLGKMIPGL  102 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~i~~~sGt~a~~~~l~~l~~~~~gd  102 (514)
                      .++..+|+.++++.-..+  +    |+........++.+|++++        .++++++.++++|++.++.++++  ||.
T Consensus        80 s~~a~~Av~~al~Sgk~N--~----Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~--p~a  151 (447)
T KOG0259|consen   80 SQEAEQAVVDALRSGKGN--G----YAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLAN--PGA  151 (447)
T ss_pred             CHHHHHHHHHHHhcCCCC--C----cCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcC--CCC
Confidence            578999999999862221  1    2222334566777777753        34556666678999999999987  999


Q ss_pred             eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848        103 HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  182 (514)
Q Consensus       103 ~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (514)
                      .|+++.+.++-........                                                             
T Consensus       152 NILlPrPGfp~Y~~~a~~~-------------------------------------------------------------  170 (447)
T KOG0259|consen  152 NILLPRPGFPLYDTRAIYS-------------------------------------------------------------  170 (447)
T ss_pred             ceecCCCCCchHHHhhhhc-------------------------------------------------------------
Confidence            9999988775544333333                                                             


Q ss_pred             eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec---CCChhHHHHHHhhccCCC
Q psy16848        183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR---HNDVNHLTQVLENMDVKI  259 (514)
Q Consensus       183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~---~~d~~~l~~~l~~~~~~~  259 (514)
                                                                         |.++.+++   +++++.+...+++...++
T Consensus       171 ---------------------------------------------------~lEVR~ydlLPe~~weIDL~~veal~DEN  199 (447)
T KOG0259|consen  171 ---------------------------------------------------GLEVRYYDLLPEKDWEIDLDGVEALADEN  199 (447)
T ss_pred             ---------------------------------------------------CceeEeecccCcccceechHHHHHhhccC
Confidence                                                               33444443   667888888888888889


Q ss_pred             ceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEcCCcccccCCC
Q psy16848        260 PKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISGTLGKAFGNIG  335 (514)
Q Consensus       260 ~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G  335 (514)
                      |.++++.||+||.|.+++   |++|++.|+++|+++|.||+|....+| .+..++..+..+  -+.+.+++.||.+=.+|
T Consensus       200 T~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi--VPVitlggisKrW~VPG  277 (447)
T KOG0259|consen  200 TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI--VPVITLGGISKRWIVPG  277 (447)
T ss_pred             eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc--CceEeecccccccccCC
Confidence            999999999999999999   999999999999999999999955554 344444444433  78999999999887668


Q ss_pred             ---eEEEecH--------HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        336 ---GYIVGTK--------NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       336 ---G~l~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                         ||++..+        ..++.+......   +...+.+.++|+-..|+.-.++.......-++.+.+...+.|++. +
T Consensus       278 WRlGWi~~hD~~gvf~~~~~~q~~~~~~~~---~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~  354 (447)
T KOG0259|consen  278 WRLGWIALHDPRGVFRDTKVVQGIKNFLDI---IPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPC  354 (447)
T ss_pred             ceeeeEEEecccccccchHHHHHHHHHHhc---cCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence               9987642        233444443322   346778889999999987777788888999999999999999998 6


Q ss_pred             Cc-cccCCCcE-EEEEe-----CCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        404 FP-VEHTPSHI-IPIKI-----GNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       404 ~~-~~~~~~~~-~~i~l-----~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +. ...|.+.+ +.+.+     ++-.+..+|+.+|.+|+.+.+-||..+..   ++|+|++++  +..+.+++++++|++
T Consensus       355 l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~---~nw~Ri~i~--~~~~~leea~~Rik~  429 (447)
T KOG0259|consen  355 LTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGL---KNWLRIVIT--VEEEMLEEAFSRIKE  429 (447)
T ss_pred             cccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccC---CCeEEEEEc--cChHHHHHHHHHHHH
Confidence            66 45566653 33332     34566789999999999999999987544   579999998  678899999999999


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      +..+-
T Consensus       430 Fc~RH  434 (447)
T KOG0259|consen  430 FCDRH  434 (447)
T ss_pred             HHHhh
Confidence            98764

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.93  E-value=2.4e-24  Score=219.53  Aligned_cols=318  Identities=20%  Similarity=0.245  Sum_probs=231.0

Q ss_pred             ChhHHHHHHHHHHHhCCCCCC--cCcccCcchHHHHHHHHHHhHcCCCc---EEEEeccccccccchhhccc-cCCCceE
Q psy16848         31 PKGGRKCLGEALEKFGTGAGG--TRNISGNSLFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTLFTLGK-MIPGLHY  104 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l~~l~~-~~~gd~v  104 (514)
                      ++.+.+++.+.+..+......  +.......+..+++++.+++++|.+.   .+|++|+|+++..++..+.. ..+||+|
T Consensus        12 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~v   91 (371)
T PF00266_consen   12 PKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEV   91 (371)
T ss_dssp             BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEE
T ss_pred             CHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccccccccc
Confidence            578999999998865433311  11122236778899999999999766   46667778888888888721 3499999


Q ss_pred             EecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeec
Q psy16848        105 ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE  184 (514)
Q Consensus       105 ~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (514)
                      ++....|.+....+..                                                                
T Consensus        92 l~~~~~~~s~~~~~~~----------------------------------------------------------------  107 (371)
T PF00266_consen   92 LVTSNEHPSNRYPWEE----------------------------------------------------------------  107 (371)
T ss_dssp             EEEESSHHHHHHHHHH----------------------------------------------------------------
T ss_pred             cccccccccccccccc----------------------------------------------------------------
Confidence            9999999998733211                                                                


Q ss_pred             cccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCChhHHHHHHhhccCCC
Q psy16848        185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HNDVNHLTQVLENMDVKI  259 (514)
Q Consensus       185 ~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d~~~l~~~l~~~~~~~  259 (514)
                                                                  .....|.++..++     ..|.+.+++.+.    ++
T Consensus       108 --------------------------------------------~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~----~~  139 (371)
T PF00266_consen  108 --------------------------------------------IAKRKGAEVRVIPADPGGSLDLEDLEEALN----PD  139 (371)
T ss_dssp             --------------------------------------------HHHHTTEEEEEEEEGTTSSCSHHHHHHHHH----TT
T ss_pred             --------------------------------------------ccccchhhhccccccccchhhhhhhhhhhc----cc
Confidence                                                        1112233333333     124555666663    56


Q ss_pred             ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEE
Q psy16848        260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYI  338 (514)
Q Consensus       260 ~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l  338 (514)
                      ++++++++..|.+|...|+++|.++|+++|+++++|.++++|..        +.+....++|++++|.+|.+|+.| |++
T Consensus       140 ~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~--------~id~~~~~~D~~~~s~~Kl~gp~G~g~l  211 (371)
T PF00266_consen  140 TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV--------PIDLDELGADFLVFSSHKLGGPPGLGFL  211 (371)
T ss_dssp             ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS--------S--TTTTTESEEEEESTSTTSSSTEEEE
T ss_pred             cceEEeecccccccEEeeeceehhhhhccCCceeEechhccccc--------cccccccccceeeecccccCCCCchhhh
Confidence            89999999999999999999999999999999999999998775        222224589999999999557778 999


Q ss_pred             EecHHHHHHHHhhcCceE------------------e-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        339 VGTKNFIDTIRSYAAGFI------------------F-TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       339 ~~~~~~~~~l~~~~~~~~------------------~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +.+++.++.+++...++.                  + ..+.+.....++..+++.+.+.+++++.++..++.+++.+.|
T Consensus       212 ~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l  291 (371)
T PF00266_consen  212 YVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREAL  291 (371)
T ss_dssp             EEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhh
Confidence            999999999865544332                  1 124566777888889998877788899999999999999999


Q ss_pred             HhC-CCccccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeCCCCCHHHHH
Q psy16848        400 IQI-GFPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       400 ~~~-g~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~~~~t~e~id  468 (514)
                      ++. ++.+..+     .++++.+.++. .+..++.+.|. ++||.+..|..+..+     ...+.+|+|++.++|++|||
T Consensus       292 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~L~-~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~  369 (371)
T PF00266_consen  292 EELPGIEVLGPDDEPRRPSIVSFNLPG-SDADDVVKYLE-ERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVD  369 (371)
T ss_dssp             HHTTTEEESSSSCGGBGTTEEEEEETT-SSHHHHHHHHH-HHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHH
T ss_pred             hcCCceeEeeecccccccceEEEeecC-CCHHHHHHHHh-hcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHh
Confidence            998 4444332     34588888754 56788888885 779999987664411     12379999999999999999


Q ss_pred             HH
Q psy16848        469 KF  470 (514)
Q Consensus       469 ~~  470 (514)
                      ++
T Consensus       370 ~l  371 (371)
T PF00266_consen  370 RL  371 (371)
T ss_dssp             HH
T ss_pred             hC
Confidence            85

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=4.5e-24  Score=217.51  Aligned_cols=325  Identities=18%  Similarity=0.156  Sum_probs=216.2

Q ss_pred             eeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---------CcEEEEecccc-c
Q psy16848         20 TCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---------EAGLVFTSCYV-A   87 (514)
Q Consensus        20 ~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~i~~~sGt~-a   87 (514)
                      ++|++.+.  +..+|.+.+++.+.+.. +.....+. ..|    ..++++.++++++.         ++.|++++|++ +
T Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~-~~G----~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a  103 (374)
T PRK02610         30 LDRLDTNEFPYDLPPDLKQKLAWLYQQ-GIESNRYP-DGG----HEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL  103 (374)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHhh-cccccCCC-CCc----hHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence            66775443  33467899988887664 11111111 123    35566666666542         12366677665 4


Q ss_pred             cccchhhccccCCCc-eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         88 NDSTLFTLGKMIPGL-HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd-~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +..++.+++.  +|| .|+++.++|......++..|.+++.++..+ +                                
T Consensus       104 l~~~~~~~~~--~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~--------------------------------  148 (374)
T PRK02610        104 IRSLLIATCL--GGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-E--------------------------------  148 (374)
T ss_pred             HHHHHHHHcC--CCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-c--------------------------------
Confidence            5555555554  775 899999999998888888888777654310 0                                


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                  +.                                             ..|.+
T Consensus       149 ----------------------------~~---------------------------------------------~~d~~  155 (374)
T PRK02610        149 ----------------------------TF---------------------------------------------EIDLA  155 (374)
T ss_pred             ----------------------------cC---------------------------------------------CCCHH
Confidence                                        00                                             01455


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH-cCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      .+++.+++....+++++++++||||||.+++.+++.++.+- +++++|+||+|..... ..  ......  .....++++
T Consensus       156 ~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~-~~--~~~~~~--~~~~~ivi~  230 (374)
T PRK02610        156 AAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQ-TT--LVGELA--QHPNWVILR  230 (374)
T ss_pred             HHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCc-cc--hHHHHh--cCCCEEEEE
Confidence            55555544323468999999999999999996555554431 4899999999983321 11  111111  123568899


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ||||.+|.+|   ||+++++++++.+......+    +.+.+.+.++..+++.. +...+.++... +.++.+.+.|+++
T Consensus       231 SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~~~----~~~~~~q~a~~~~l~~~-~~~~~~~~~~~-~~r~~l~~~L~~~  304 (374)
T PRK02610        231 TFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPY----NLPSFSQLAAQLALEHR-QELLAAIPEIL-QERDRLYQALQEL  304 (374)
T ss_pred             ecchhccCcccceeeeecCHHHHHHHHHhcCCC----CCCHHHHHHHHHHhcCH-HHHHHHHHHHH-HHHHHHHHHHHhC
Confidence            9999998878   99999999999887765333    45777777777777643 23333444443 4467788888776


Q ss_pred             -CCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        403 -GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       403 -g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                       ++.+.++.+.+++++++...+..++++.| .++||.+.+.        .+++|++++   +.+++++++++|+++++.+
T Consensus       305 ~~~~~~p~~g~f~~~~l~~~~~~~~~~~~l-~~~gi~v~~~--------~~~lRls~~---~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        305 PQLRVWPSAANFLYLRLSQDAALAALHQAL-KAQGTLVRHT--------GGGLRITIG---TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             CCcEeCCCcceEEEEeCCCCCCHHHHHHHH-HHCCEEEEeC--------CCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence             66555556678888887655678899998 4999999642        358999998   5678999999999988765

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.93  E-value=7.1e-24  Score=216.23  Aligned_cols=323  Identities=18%  Similarity=0.168  Sum_probs=227.2

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccchhhcccc--CCCceEE
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTLFTLGKM--IPGLHYI  105 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l~~l~~~--~~gd~v~  105 (514)
                      .+|.+.+++.+++...   .+.+....+.....+++++++++++|.+.  .+++++||+++..++.++...  .++|.|+
T Consensus        32 ~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl  108 (371)
T PRK13520         32 PHPIARKAHEMFLETN---LGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIV  108 (371)
T ss_pred             chHHHHHHHHHHHhcC---CCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEE
Confidence            4789899999888752   12222223456677899999999999753  577888999998888766432  3689999


Q ss_pred             ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848        106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  185 (514)
Q Consensus       106 ~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (514)
                      +++..|.+...+++..|.+++.++.++.                                                    
T Consensus       109 ~~~~~h~s~~~~~~~~g~~~~~v~~~~~----------------------------------------------------  136 (371)
T PRK13520        109 VPESAHFSFDKAADMLGVELRRAPLDDD----------------------------------------------------  136 (371)
T ss_pred             ecCcchHHHHHHHHHcCceEEEecCCCC----------------------------------------------------
Confidence            9999999987776666666554432100                                                    


Q ss_pred             ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEE
Q psy16848        186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF  265 (514)
Q Consensus       186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~  265 (514)
                                                                             ...|.+.+++.++    ++++++++
T Consensus       137 -------------------------------------------------------~~~d~~~l~~~i~----~~~~~vi~  157 (371)
T PRK13520        137 -------------------------------------------------------YRVDVKAVEDLID----DNTIGIVG  157 (371)
T ss_pred             -------------------------------------------------------CcCCHHHHHHHHh----hCCEEEEE
Confidence                                                                   0114455555553    33667777


Q ss_pred             ecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccC--CCCCCccccCCCccCceEEEcCCcccccC-C-CeEEE-e
Q psy16848        266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG--EHGAGIGERDGQLHNMDIISGTLGKAFGN-I-GGYIV-G  340 (514)
Q Consensus       266 ~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g--~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~-GG~l~-~  340 (514)
                      .+++|++|.+.|+++|.++|+++|+++++|++|+.+...  ..+   ........+.|.+++|.+|+..+ . +|+++ .
T Consensus       158 ~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~---~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~  234 (371)
T PRK13520        158 IAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDP---PNFDFSLPGVDSITIDPHKMGLAPIPAGGILFR  234 (371)
T ss_pred             EcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCC---CCccccCCCCceEEECCccccCccCCceEEEEc
Confidence            778899999999999999999999999999999854321  111   00111123678898899997643 2 25454 5


Q ss_pred             cHHHHHHHHhhcCce------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc-cccCCCcE
Q psy16848        341 TKNFIDTIRSYAAGF------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP-VEHTPSHI  413 (514)
Q Consensus       341 ~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~  413 (514)
                      ++++++.+......+      .+..+.+...+.++.++++.+..+++++.+++..++.+++.+.|++.|++ +..+..++
T Consensus       235 ~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  314 (371)
T PRK13520        235 DESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEPVLNI  314 (371)
T ss_pred             CHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCceE
Confidence            666777664221111      01112344557778888887766677888999999999999999988887 55556667


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.+.++   ...++.+.|. ++||.+....      ..+++|++++..+|++|++++++.|+++++
T Consensus       315 v~~~~~---~~~~v~~~L~-~~gi~v~~~~------~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        315 VAFDDP---NPDEVREKLR-ERGWRVSVTR------CPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             EEEecC---CHHHHHHHHH-HCCceeccCC------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            777765   3678888995 8899987532      245899999888999999999999998765

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.93  E-value=1.1e-23  Score=210.78  Aligned_cols=270  Identities=13%  Similarity=0.045  Sum_probs=195.6

Q ss_pred             HHHHHHHHhHcCCCcEEEEecccc-ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHH
Q psy16848         63 EKLEEDVAKLHQKEAGLVFTSCYV-ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  141 (514)
Q Consensus        63 ~~~~~~la~~~~~~~~i~~~sGt~-a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  141 (514)
                      .++++.++++++.+..+ +++|++ ++..++  ..  .+||.|+++.++|......++..|.+++.++..   ++     
T Consensus        52 ~~Lr~~ia~~~~~~~I~-it~Gs~~al~~~~--~~--~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~---~~-----  118 (330)
T PRK05664         52 DGLEAAARAYYGAPQLL-PVAGSQAAIQALP--RL--RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA---EV-----  118 (330)
T ss_pred             HHHHHHHHHHhCCCCEE-ECcCHHHHHHHHH--Hc--cCCCEEEEcCCChHHHHHHHHHcCCeEEEechh---hH-----
Confidence            68889999999987544 555554 544432  23  399999999999999888877777776655321   11     


Q ss_pred             hcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCcee
Q psy16848        142 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVA  221 (514)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~  221 (514)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (330)
T PRK05664        119 --------------------------------------------------------------------------------  118 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccc
Q psy16848        222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       222 ~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~  298 (514)
                                                 ++.+     ++++++++++|+||||.+++   +++|.++|+++++++|+||+|
T Consensus       119 ---------------------------~~~~-----~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y  166 (330)
T PRK05664        119 ---------------------------EAAL-----DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAF  166 (330)
T ss_pred             ---------------------------hhhh-----cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCc
Confidence                                       1111     13568888899999999999   577777789999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI  375 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~  375 (514)
                      .....   ..++....  ..+..++++||||.+|.+|   ||+++++++++.+......+    ..+...+.++.++|+.
T Consensus       167 ~~~~~---~~s~~~~~--~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~L~~  237 (330)
T PRK05664        167 MDNTP---QHSLAACA--HRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGPW----TVSGPTRWLAQAALAD  237 (330)
T ss_pred             ccCCC---cccccccc--cCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCCC----CCCHHHHHHHHHHHhC
Confidence            73321   11222222  2245799999999999778   99999999999988765433    4566777777777763


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEE
Q psy16848        376 LSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIR  455 (514)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iR  455 (514)
                      .  ...++.++.++++++++.+.|++.++...++...++++.++   +..++.+.|. ++||.++..   .   ..+++|
T Consensus       238 ~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~f~~~~~~---~~~~~~~~l~-~~gi~v~~f---~---~~~~iR  305 (330)
T PRK05664        238 T--PWQRRQRERLLAASQRLAALLRRHGLTPAGGCALFQWVRTE---DAAALHEFLA-RRGILTRLF---E---QPASLR  305 (330)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHHHHCCCcccCCcceEEEEecC---CHHHHHHHHH-HCCeEEEEC---C---CCCeEE
Confidence            2  34456788889999999999999876533333346666654   3678888885 899999742   1   246999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        456 LAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       456 l~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++++.  +.++++++.+.|+++.++
T Consensus       306 is~~~--~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        306 FGLPA--DEADWARLDQALLAYRKE  328 (330)
T ss_pred             EECCC--CHHHHHHHHHHHHHHHhh
Confidence            99983  678899999999887654

>TIGR01814 kynureninase kynureninase

Probab=99.93  E-value=2e-23  Score=215.09  Aligned_cols=330  Identities=18%  Similarity=0.167  Sum_probs=221.1

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcc--cCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhh
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNI--SGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~   94 (514)
                      .+.|-++... .++.+.+++.+.++.++...++....  .+.....+++++ + +++|.+  ..+|++|+|+++..++.+
T Consensus        29 iyld~~a~g~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~  105 (406)
T TIGR01814        29 IYLDGNSLGL-MPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLAS  105 (406)
T ss_pred             EEecCCCcCc-CcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHH
Confidence            4555444433 37789999999888776543322211  122334445544 4 788864  456666677777777777


Q ss_pred             ccccC-CCceEEecCccchhhhhhhh----cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         95 LGKMI-PGLHYISDAGNHASMIQGIR----NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        95 l~~~~-~gd~v~~~~~~h~~~~~~~~----~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      +...+ +++.|+++..+|+++...+.    ..|.+++..                                         
T Consensus       106 ~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~-----------------------------------------  144 (406)
T TIGR01814       106 FYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEES-----------------------------------------  144 (406)
T ss_pred             hcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccc-----------------------------------------
Confidence            64311 23478999999999764432    223332000                                         


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCC
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HND  244 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d  244 (514)
                                                                                         .+.++     ..+
T Consensus       145 -------------------------------------------------------------------~~~~~~~~~g~~~  157 (406)
T TIGR01814       145 -------------------------------------------------------------------MVQIEPREEETLR  157 (406)
T ss_pred             -------------------------------------------------------------------eEEeccCCCCccC
Confidence                                                                               01111     014


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      .+.+++.+++ .+++|++|++++++|.+|...|+++|.++|+++|+++++|++|++|..        +.+....++|+++
T Consensus       158 ~~~l~~~~~~-~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~--------~id~~~~gvD~~~  228 (406)
T TIGR01814       158 LEDILDTIEK-NGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV--------PLDLHDWGVDFAC  228 (406)
T ss_pred             HHHHHHHHHh-cCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc--------ccccccCCCCEEE
Confidence            4556565543 246799999999999999999999999999999999999999998765        2221134789999


Q ss_pred             cCCcccc-cCCCeEEEecHHHHHHHHhhcCce--------------------Ee-ccCCcHHHHHHHHHHHHHhhhchHH
Q psy16848        325 GTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGF--------------------IF-TTSLPPTVLAGAREAIRILSSQEGV  382 (514)
Q Consensus       325 ~S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~--------------------~~-~~~~~~~~~~a~~~~l~~~~~~~~~  382 (514)
                      +|.||++ |++||.++..++....+.+...++                    .+ ..+.+...++++.++++.+.+.+.+
T Consensus       229 ~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~  308 (406)
T TIGR01814       229 WCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGME  308 (406)
T ss_pred             EcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHH
Confidence            9999998 455655554433333332211110                    00 1235667778888899988777888


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-C----CccccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        383 ELRAKHQDIVAYLRNELIQI-G----FPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~-g----~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                      +++++.+.+.+++.+.|++. +    +.+..+     .++++.+.++  ....++.+.|. ++||.+..       ...+
T Consensus       309 ~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~~~~~~~~~L~-~~gi~v~~-------~~~~  378 (406)
T TIGR01814       309 ALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--VPGKAVFQALI-KRGVIGDK-------REPS  378 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--CCHHHHHHHHH-HCCEEEec-------cCCC
Confidence            99999999999999999874 3    555443     2457777776  34678888985 89998752       2235


Q ss_pred             EEEEEe-CCCCCHHHHHHHHHHHHHHH
Q psy16848        453 KIRLAP-TPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       453 ~iRl~~-~~~~t~e~id~~~~~l~~~l  478 (514)
                      .+|+++ +.++|++|+++++++|++++
T Consensus       379 ~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       379 VIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             eEEEechhccCCHHHHHHHHHHHHHHh
Confidence            899999 58999999999999998864

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.93  E-value=1.8e-23  Score=211.86  Aligned_cols=219  Identities=18%  Similarity=0.269  Sum_probs=163.6

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      |.+.+++.+++.  ++++++++.+++|++|...|+++|.++|++||+++|+|+++++|..     ++ +..  ..+.|++
T Consensus       112 d~~~l~~~l~~~--~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~-----~~-~~~--~~~~d~~  181 (355)
T TIGR03301       112 DLNRIEEALAAD--PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAI-----PI-DIE--ELDVDAL  181 (355)
T ss_pred             CHHHHHHHHHhC--CCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCc-----cc-chh--hcCccEE
Confidence            455666666542  3467888899999999999999999999999999999999886643     11 112  2368999


Q ss_pred             EcCCcccc-cCCC-eEEEecHHHHHHHHhhcCceE---------------eccCCcHHHHHHHHHHHHHhhhch-HHHHH
Q psy16848        324 SGTLGKAF-GNIG-GYIVGTKNFIDTIRSYAAGFI---------------FTTSLPPTVLAGAREAIRILSSQE-GVELR  385 (514)
Q Consensus       324 ~~S~sK~l-g~~G-G~l~~~~~~~~~l~~~~~~~~---------------~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~  385 (514)
                      ++|++|++ |+.| |+++.++++++.+......+.               +..+.+...+.++.++++.+.+++ +++.+
T Consensus       182 ~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~  261 (355)
T TIGR03301       182 IASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARI  261 (355)
T ss_pred             EecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHH
Confidence            99999987 5567 999999999888763211110               112456777788888888775554 78888


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccC---CCc-EEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        386 AKHQDIVAYLRNELIQIGFPVEHT---PSH-IIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g~~~~~~---~~~-~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      ++++++++++.+.|++.|+.+..+   .++ ++++.++..  .+..++.+.|. ++||.+.++..+.    .+++|+++.
T Consensus       262 ~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~i~~~~~~~----~~~iRis~~  336 (355)
T TIGR03301       262 ARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELK-ERGFVIYPGKLTL----ADTFRIGTI  336 (355)
T ss_pred             HHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHH-HCCEEEECCcccc----ccEEEEecC
Confidence            999999999999999888765433   223 456777642  34568888885 8999998765321    268999998


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~  477 (514)
                      ..++++|++++++.|+++
T Consensus       337 ~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       337 GEIDAADIERLLEAIKDA  354 (355)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            788999999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.93  E-value=2.6e-23  Score=211.41  Aligned_cols=221  Identities=18%  Similarity=0.238  Sum_probs=165.6

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      |.+.+++.+++.  ++++++.+.+++|+||...|+++|.++|+++|+++++|+++++|..     ++ +..  ..++|++
T Consensus       116 d~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~-----~~-~~~--~~~~D~~  185 (363)
T TIGR02326       116 DVVEVEAILAAD--PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGI-----PI-DIA--ELHIDYL  185 (363)
T ss_pred             CHHHHHHHHhhC--CCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCc-----cc-chh--hcCccEE
Confidence            456666666542  3467888999999999999999999999999999999999986653     11 122  3478999


Q ss_pred             EcCCcccc-cCCC-eEEEecHHHHHHHHhhcCceE----------------eccCCcHHHHHHHHHHHHHhhhc-hHHHH
Q psy16848        324 SGTLGKAF-GNIG-GYIVGTKNFIDTIRSYAAGFI----------------FTTSLPPTVLAGAREAIRILSSQ-EGVEL  384 (514)
Q Consensus       324 ~~S~sK~l-g~~G-G~l~~~~~~~~~l~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~-~~~~~  384 (514)
                      ++|+||++ |++| |+++.+++.++.+......+.                ..++.+...+.++.++++.+..+ +++++
T Consensus       186 ~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~  265 (363)
T TIGR02326       186 ISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAAR  265 (363)
T ss_pred             EecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHH
Confidence            99999988 5568 999999888776543211110                01245677788888888876544 47788


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccC---CCc-EEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        385 RAKHQDIVAYLRNELIQIGFPVEHT---PSH-IIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~g~~~~~~---~~~-~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      .++++++++++.+.|+++|+....+   .++ +.++.+++.  .+..++.+.| +++||.++++..+    ..+.+|+++
T Consensus       266 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L-~~~gi~v~~g~~~----~~~~iRi~~  340 (363)
T TIGR02326       266 HQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRL-KEQGFVIYPGKVS----QVDCFRIGN  340 (363)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHH-HHCCEEEECCcCC----CCCEEEEec
Confidence            9999999999999999988776433   333 455776653  3567788888 4899999877642    246899998


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q psy16848        459 TPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~  479 (514)
                      ...++.+|+++++++|++++.
T Consensus       341 ~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       341 IGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             CCCCCHHHHHHHHHHHHHHhC
Confidence            767899999999999998764

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.93  E-value=2.2e-24  Score=216.66  Aligned_cols=322  Identities=17%  Similarity=0.214  Sum_probs=209.0

Q ss_pred             eeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcccc
Q psy16848         20 TCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKM   98 (514)
Q Consensus        20 ~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~   98 (514)
                      ++|++++..- .+|.+.+++.+....        ...|+..+...++++.+++++|.+..+++++|++++..++.++.. 
T Consensus         1 ~~~~~~~~~~~p~~~~~~a~~~~~~~--------~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~-   71 (333)
T PRK10534          1 MIDLRSDTVTRPSRAMLEAMMAAPVG--------DDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCE-   71 (333)
T ss_pred             CcccccccCCCCCHHHHHHHHhccCC--------CcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcC-
Confidence            4788765543 467787777553321        112334567899999999999999899999999998888877765 


Q ss_pred             CCCceEEecCccchhhhhh--hhcCC-CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848         99 IPGLHYISDAGNHASMIQG--IRNSS-APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus        99 ~~gd~v~~~~~~h~~~~~~--~~~~~-~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                       +||+|+++.+.|.....+  .+..+ .+++.++..+                                           
T Consensus        72 -~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  107 (333)
T PRK10534         72 -RGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA-------------------------------------------  107 (333)
T ss_pred             -CCCeeEEechhhhhHhcCCchHHhcCceEEeecCCC-------------------------------------------
Confidence             999999988887544321  11111 2222111100                                           


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  255 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~  255 (514)
                                         .                                             ...|.+.+++.+.+.
T Consensus       108 -------------------~---------------------------------------------~~~d~~~l~~~i~~~  123 (333)
T PRK10534        108 -------------------D---------------------------------------------GTLPLDKVAAKIKPD  123 (333)
T ss_pred             -------------------C---------------------------------------------CCCCHHHHHHhhccc
Confidence                               0                                             011334444433221


Q ss_pred             c--CCCceEEEEecCCCCCccccCH---HHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        256 D--VKIPKLVAFETVHSMTGAICPL---KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       256 ~--~~~~~~vv~~~~~nptG~~~~l---~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .  ..+++++++++++  +|.+.+.   ++|.++|++|++++++||+|.++.....+....   ......|.++.||||.
T Consensus       124 ~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~---~~~~~~~~~~~s~SK~  198 (333)
T PRK10534        124 DIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELK---EITQYCDSFTICLSKG  198 (333)
T ss_pred             CcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHH---HHHhcCCEEEEEeEcC
Confidence            0  0157889988755  5999994   566788999999999999987432211111111   1111234445599999


Q ss_pred             ccC-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        331 FGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       331 lg~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      ++. .||++++++++++.+......+....+.+...++++.++++..     .+.+++..+.++++.+.|++.|+++..+
T Consensus       199 ~~~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~r~~l~~~L~~~g~~~~~~  273 (333)
T PRK10534        199 LGTPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN-----VARLQEDHDNAAWLAEQLREAGADVMRQ  273 (333)
T ss_pred             CCCcccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence            986 3457889999999888765443211223345566666666532     1233445556789999999999888777


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .++++++++++ ....++.+.| +++||.++++.         .+|++.+..+|++++++++++|++++.
T Consensus       274 ~~nfv~~~~~~-~~~~~~~~~l-~~~gi~v~~~~---------~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        274 DTNMLFVRVGE-EQAAALGEYM-RERNVLINASP---------IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             CceEEEEECCc-hhHHHHHHHH-HHcCeeecCCc---------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            88888888764 2356777777 59999997542         478888766799999999999997764

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.93  E-value=4.8e-23  Score=211.44  Aligned_cols=335  Identities=15%  Similarity=0.123  Sum_probs=215.5

Q ss_pred             ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccc
Q psy16848         18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDST   91 (514)
Q Consensus        18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~   91 (514)
                      ..++||..+.  +...+.+.+++.+.++........+....|..++.+.+++.+.+..+    .++.++++++++++..+
T Consensus        33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~  112 (394)
T PRK06836         33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVA  112 (394)
T ss_pred             CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHH
Confidence            4568885433  22346777777776654221122222223444444444444443322    23445555556777777


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.+++.  +||.|+++.+.|......++..|.+++.++..+ +                                     
T Consensus       113 ~~~l~~--~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~-~-------------------------------------  152 (394)
T PRK06836        113 LKAILN--PGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDT-D-------------------------------------  152 (394)
T ss_pred             HHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEEecCC-c-------------------------------------
Confidence            777766  999999999988776655555555554433210 0                                     


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                             +.                                             .-|.+.+++.
T Consensus       153 -----------------------~~---------------------------------------------~~d~~~l~~~  164 (394)
T PRK06836        153 -----------------------TF---------------------------------------------QPDLDALEAA  164 (394)
T ss_pred             -----------------------cC---------------------------------------------cCCHHHHHhh
Confidence                                   00                                             0033344443


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHH------cCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQ------HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~------~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      +    +++++++++++++||||.++|   +++|.++|++      ||+++|+||+|.....+...  ...... ..+.++
T Consensus       165 ~----~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~--~~~~~~-~~~~~i  237 (394)
T PRK06836        165 I----TPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAE--VPYIFK-YYDNSI  237 (394)
T ss_pred             c----CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCC--CCChHH-ccCcEE
Confidence            3    456899999999999999999   6888888999      89999999999844332111  111111 125689


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHH---HHhh---cCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDT---IRSY---AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~---l~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                      +++||||.++.+|   ||+++++++.+.   +...   ..... ....+...+.++...++.    .  ..++.++++++
T Consensus       238 ~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~----~--~~~~~~~~~r~  310 (394)
T PRK06836        238 VVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILG-FVNAPALMQRVVAKCLDA----T--VDVSIYKRNRD  310 (394)
T ss_pred             EEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccc-cccCCHHHHHHHHHHhCC----h--HHHHHHHHHHH
Confidence            9999999999667   999998766432   1111   11110 124556666666655542    1  13566788888


Q ss_pred             HHHHHHHhCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q psy16848        394 YLRNELIQIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVT  472 (514)
Q Consensus       394 ~l~~~L~~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~  472 (514)
                      .+.+.|++.|+.+..+.++ ++++.++. .+..++++.| .++||.+.++..+..   .+++|++++  .++++++++++
T Consensus       311 ~l~~~L~~~g~~~~~~~gg~~~~~~~~~-~~~~~~~~~l-~~~gv~v~~g~~f~~---~~~iRi~~~--~~~~~~~~~i~  383 (394)
T PRK06836        311 LLYDGLTELGFECVKPQGAFYLFPKSPE-EDDVAFCEKA-KKHNLLLVPGSGFGC---PGYFRLSYC--VDTETIERSLP  383 (394)
T ss_pred             HHHHHHHhCCCEeecCCceEEEEEeCCC-CCHHHHHHHH-HhCCEEEECchhcCC---CCeEEEEec--CCHHHHHHHHH
Confidence            9999998888877666655 56666665 3577888888 489999999876432   469999998  57999999999


Q ss_pred             HHHHHHHHc
Q psy16848        473 DLLAVWKSL  481 (514)
Q Consensus       473 ~l~~~l~~~  481 (514)
                      +|+++++++
T Consensus       384 ~l~~~l~~~  392 (394)
T PRK06836        384 AFEKLAKEY  392 (394)
T ss_pred             HHHHHHHHh
Confidence            999998875

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.93  E-value=1.9e-23  Score=216.54  Aligned_cols=228  Identities=24%  Similarity=0.311  Sum_probs=160.8

Q ss_pred             CEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCcc
Q psy16848        236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG  311 (514)
Q Consensus       236 ~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~  311 (514)
                      ....++.+|.+.+++.+.+. .+++++|++++.++.+|.+.+    +++|+++|++||+++|+||+|+....|..+  ..
T Consensus       173 ~~~~~~~~d~~~l~~~i~~~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~--~~  249 (423)
T TIGR00713       173 LTLVLPYNDLEALEEVFEEY-GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGG--AQ  249 (423)
T ss_pred             ceEEeCCCCHHHHHHHHHHc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcch--hH
Confidence            45667778899999888753 356889999887777898877    799999999999999999999822433222  22


Q ss_pred             ccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhch-HHHHHH
Q psy16848        312 ERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQE-GVELRA  386 (514)
Q Consensus       312 ~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~  386 (514)
                      +..+.  .+|++  +|+|.+++ |   |++++++++.+.+...... ...+++.+++.++++.++|+.+.++. .++.++
T Consensus       250 ~~~~~--~pDi~--t~sK~l~~-G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~  324 (423)
T TIGR00713       250 EYFGV--EPDLT--TLGKIIGG-GLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDE  324 (423)
T ss_pred             HHhCC--Ccchh--hhhhhhcC-CCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            33343  67877  89999985 5   9999999999888643211 11244789999999999999886543 334444


Q ss_pred             HHHHHHHHHHHHHHhCCCccc-cCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        387 KHQDIVAYLRNELIQIGFPVE-HTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                      ....+++.+.+.+++.++... ...+.++.+.+...             .....+++.|+ ++||.+.+..+       +
T Consensus       325 ~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~  396 (423)
T TIGR00713       325 LAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPSQF-------E  396 (423)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecCCc-------c
Confidence            444555555555555565442 35677777766421             01235778886 89999864321       3


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+|++++  +|++++++++++|+++++++
T Consensus       397 ~~~l~~~--~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       397 ACFLSAA--HTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             ceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence            5788876  79999999999999988653

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.93  E-value=3.9e-23  Score=210.53  Aligned_cols=224  Identities=17%  Similarity=0.228  Sum_probs=166.9

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      |.+.+++.+++.  ++++++.+++++||||...|+++|.++|+++|+++|+|+++++|..     ++ +..  ..++|++
T Consensus       118 d~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~-----~~-~~~--~~~~d~~  187 (368)
T PRK13479        118 DAAEVEAALAAD--PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAI-----PI-DIA--ELGIDAL  187 (368)
T ss_pred             CHHHHHHHHHhC--CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCc-----cc-ccc--ccCceEE
Confidence            455666655432  3467899999999999999999999999999999999988876542     11 112  3468999


Q ss_pred             EcCCcccc-cCCC-eEEEecHHHHHHHHhhcCceEec---------------cCCcHHHHHHHHHHHHHhhhc-hHHHHH
Q psy16848        324 SGTLGKAF-GNIG-GYIVGTKNFIDTIRSYAAGFIFT---------------TSLPPTVLAGAREAIRILSSQ-EGVELR  385 (514)
Q Consensus       324 ~~S~sK~l-g~~G-G~l~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~a~~~~l~~~~~~-~~~~~~  385 (514)
                      ++|++|++ |++| |++++++++++.+......+..+               .+.+...+.++.++++.+.++ ++++..
T Consensus       188 v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~  267 (368)
T PRK13479        188 ISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARG  267 (368)
T ss_pred             EecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            99999987 6678 99999999888876543221111               145666677777888766443 467888


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccC---CCc-EEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        386 AKHQDIVAYLRNELIQIGFPVEHT---PSH-IIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g~~~~~~---~~~-~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      +++.++++++.+.|+++|+.+..+   ..+ ++.+.++..  .+..++.+.|. ++||.+.++..+    ..+++|++..
T Consensus       268 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~g~~~----~~~~iRis~~  342 (368)
T PRK13479        268 ARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLK-EQGFVIYPGKLT----QVDTFRIGCI  342 (368)
T ss_pred             HHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHH-HCCEEEecCCCC----CCCEEEEecC
Confidence            999999999999999998776433   122 455655543  35678889995 899999876432    2458999986


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        460 PFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      ..++++|+++++++|++++++++
T Consensus       343 ~~~t~edi~~~l~~L~~~l~~~~  365 (368)
T PRK13479        343 GDVDAADIRRLVAAIAEALYWMG  365 (368)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcC
Confidence            67899999999999999998765

>PLN02672 methionine S-methyltransferase

Probab=99.93  E-value=2.7e-23  Score=228.33  Aligned_cols=338  Identities=13%  Similarity=0.089  Sum_probs=227.3

Q ss_pred             CCceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC----cEEEEeccccc-c
Q psy16848         16 SNRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE----AGLVFTSCYVA-N   88 (514)
Q Consensus        16 ~g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a-~   88 (514)
                      +|..++++..  +++..+|.+.+++.+.+.+...       ..+..++.+++.+++++.+|.+    ..+++++|+++ +
T Consensus       695 ~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~-------s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL  767 (1082)
T PLN02672        695 QESSLIHMDVDESFLPVPSAVKASIFESFVRQNI-------SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF  767 (1082)
T ss_pred             CCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCC-------CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence            4556777743  4444578899999887765322       2245577889999999987753    25777778766 4


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++..  |||.|+++.++|......++..|++++.++....+                     .|           
T Consensus       768 ~lll~aLl~--pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~---------------------gf-----------  813 (1082)
T PLN02672        768 NKLVLCCVQ--EGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSD---------------------GF-----------  813 (1082)
T ss_pred             HHHHHHHcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEEeccccc---------------------CC-----------
Confidence            456677765  99999999999999888888777777655431000                     00           


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                               ..|++.+
T Consensus       814 -------------------------------------------------------------------------~lD~d~L  820 (1082)
T PLN02672        814 -------------------------------------------------------------------------KLTAKTL  820 (1082)
T ss_pred             -------------------------------------------------------------------------CCCHHHH
Confidence                                                                                     0133444


Q ss_pred             HHHHhhccCCCceEEEEecCC-CCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCC--CCccc---cCCC--
Q psy16848        249 TQVLENMDVKIPKLVAFETVH-SMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHG--AGIGE---RDGQ--  316 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~-nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~--~~~~~---~~~~--  316 (514)
                      ++.++.   .+.+++++++|+ ||||.+++   +++|.++|++||++||+||+|+...+ +...  .++.+   ....  
T Consensus       821 e~al~~---~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~s  897 (1082)
T PLN02672        821 ASTLET---VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSN  897 (1082)
T ss_pred             HHHhcc---CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhcccc
Confidence            444432   123477778876 99999999   78899999999999999999983332 2210  01111   0000  


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh------hchHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS------SQEGVELRA  386 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~  386 (514)
                      .....++++||||.++.+|   ||+++++ ++++.+.......    ......+.++.+++....      ..++.+.++
T Consensus       898 ks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s----~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~  973 (1082)
T PLN02672        898 PSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLS----RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKK  973 (1082)
T ss_pred             CCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhc----CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            0125789999999999888   9999865 4888887643211    111222323333232110      234566788


Q ss_pred             HHHHHHHHHHHHHHhCCCccccCCCcEE-EEEeCC-----------------CccHHHHHHHHHHhCCeEEecccCCCCC
Q psy16848        387 KHQDIVAYLRNELIQIGFPVEHTPSHII-PIKIGN-----------------PALNTKICDMLLKEKGHYVQPINYPTVP  448 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~i~l~~-----------------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~  448 (514)
                      .++++++++.+.|++.|+.+..+.++++ ++.++.                 ..+..++++.|+++.||.+.||.++.. 
T Consensus       974 ~Lk~rRd~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~- 1052 (1082)
T PLN02672        974 ILKSRAERLKETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI- 1052 (1082)
T ss_pred             HHHHHHHHHHHHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC-
Confidence            8999999999999999988877877644 444320                 135678999998667999999976432 


Q ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        449 VGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       449 ~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                        ++++|++++  .+++++++++++|+++.+
T Consensus      1053 --~g~~RIsfa--~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1053 --PGYCRFSFA--LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             --CCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence              579999998  478899999999998665

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.93  E-value=2.1e-23  Score=215.73  Aligned_cols=347  Identities=15%  Similarity=0.127  Sum_probs=225.5

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a   87 (514)
                      +|+.++||.+.   .-+|  ||++.+++.+++++......   ...+ .+...++.+++++..+.   ++.+|++||++|
T Consensus        39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~---~~~~-~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea  114 (425)
T PRK08088         39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCF---QVLA-YEPYLELCEKMNQKVPGDFAKKTLLVTTGSEA  114 (425)
T ss_pred             CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccc---cccC-CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHH
Confidence            66667777432   1223  89999999999998543211   1111 24556888888887753   477899999999


Q ss_pred             cccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         88 NDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        88 ~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      ++.+++.... +++++.|.+++.+|.....+....+.. ..+...                                   
T Consensus       115 ~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~-~~~~~~-----------------------------------  158 (425)
T PRK08088        115 VENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKV-NPYSAG-----------------------------------  158 (425)
T ss_pred             HHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCC-CccccC-----------------------------------
Confidence            9999876543 345666677666776665554433211 000000                                   


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec--CC-
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR--HN-  243 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~--~~-  243 (514)
                                                   .+                 .               ...+.....++  .+ 
T Consensus       159 -----------------------------~~-----------------~---------------~~~~~~~~~~p~~~~~  177 (425)
T PRK08088        159 -----------------------------MG-----------------L---------------MPGHVYRALYPCPLHG  177 (425)
T ss_pred             -----------------------------CC-----------------C---------------CCCCcEEcCCCccccC
Confidence                                         00                 0               00000000011  11 


Q ss_pred             -----ChhHHHHHHhhc-cCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccc
Q psy16848        244 -----DVNHLTQVLENM-DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGE  312 (514)
Q Consensus       244 -----d~~~l~~~l~~~-~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~  312 (514)
                           +++.+++.++.. ..++.++++++++++..|...+    +++|+++|++||+++|+||+|+ +++.|...  ..+
T Consensus       178 ~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~--~~~  255 (425)
T PRK08088        178 VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLF--AME  255 (425)
T ss_pred             ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh--HHh
Confidence                 144566666532 2356889999999988787665    8999999999999999999999 33432210  111


Q ss_pred             cCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        313 RDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       313 ~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      ..+.  .+|+.  ||||.+++ |   ||+++++++++.+.......  +.+.+++.++++.+.|+....+.   ..++++
T Consensus       256 ~~~~--~pdi~--s~sK~l~~-G~rig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~  325 (425)
T PRK08088        256 QMGV--AADLT--TFAKSIAG-GFPLAGVTGRAEVMDAIAPGGLGG--TYAGNPIACAAALAVLKVFEQEN---LLQKAN  325 (425)
T ss_pred             hcCC--CCCEE--EEeccccC-CCcceeeEecHHHHhhcCCCCCCC--CCCcCHHHHHHHHHHHHHHHhcC---HHHHHH
Confidence            2232  56765  99999986 6   99999999999887654443  55788999999999999775444   444455


Q ss_pred             HHHHHHHHHHHhC----CC-ccccCCCcEEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        390 DIVAYLRNELIQI----GF-PVEHTPSHIIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       390 ~~~~~l~~~L~~~----g~-~~~~~~~~~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      +..+++.+.|.++    +. ..+...|.++++.+.+        .....++.+.++ ++||.+.+...     ..+.+|+
T Consensus       326 ~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~-~~Gv~~~~~~~-----~~~~iRl  399 (425)
T PRK08088        326 ALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARAR-DKGLILLSCGP-----YYNVLRI  399 (425)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHH-hCCCEEecCCC-----CCCEEEE
Confidence            5555555544443    22 1223447788888732        233677888886 89998875332     1368999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +++..++++++++++++|++++++.
T Consensus       400 ~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        400 LVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             ECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            9998899999999999999998764

>PRK14012 cysteine desulfurase; Provisional

Probab=99.93  E-value=1.1e-23  Score=216.97  Aligned_cols=339  Identities=17%  Similarity=0.138  Sum_probs=217.9

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHH---HhCCCCCCcC-cccCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccch
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALE---KFGTGAGGTR-NISGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l   92 (514)
                      .|.|.++.. .-++.+.+++.+.+.   .++....... ......+..+++++.+++++|.+.  +++++|||+++..++
T Consensus         5 iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l   83 (404)
T PRK14012          5 IYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAI   83 (404)
T ss_pred             EEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHH
Confidence            455655544 235788898888886   2222111110 011123567889999999999754  677788889988877


Q ss_pred             hhccc--cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         93 FTLGK--MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        93 ~~l~~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      .++..  ..+||.|++++.+|.++...++..                                                 
T Consensus        84 ~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-------------------------------------------------  114 (404)
T PRK14012         84 KGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-------------------------------------------------  114 (404)
T ss_pred             HHHHHhhcCCCCEEEEecCccHHHHHHHHHH-------------------------------------------------
Confidence            76641  248999999999998886443211                                                 


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLT  249 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~  249 (514)
                                                                                  ...|++++.++. .+...+.
T Consensus       115 ------------------------------------------------------------~~~g~~~~~v~~~~~g~~d~  134 (404)
T PRK14012        115 ------------------------------------------------------------EREGFEVTYLDPQSNGIIDL  134 (404)
T ss_pred             ------------------------------------------------------------HhCCCEEEEEccCCCCcCCH
Confidence                                                                        111333333331 1122222


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      +.+++..+++++++++++++|++|.+.|+++|.++|+++|+++|+|+++++|..        +......++|++++|++|
T Consensus       135 ~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~--------~~~~~~~~~D~~~~s~~K  206 (404)
T PRK14012        135 EKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV--------PIDLSKLKVDLMSFSAHK  206 (404)
T ss_pred             HHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc--------ccCcccCCCCEEEEehhh
Confidence            333334455689999999999999999999999999999999999999997654        111113368999999999


Q ss_pred             cccCCC-eEEEecHHHHHHHHhhcCceE----e-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        330 AFGNIG-GYIVGTKNFIDTIRSYAAGFI----F-TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       330 ~lg~~G-G~l~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      .+|+.| |+++.+++....+.+...+..    + ..+.+.....+..++++... ....+..++.+++.+++.+.|++. 
T Consensus       207 ~~gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~  285 (404)
T PRK14012        207 IYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAK-EEMATENERIRALRDRLWNGIKDIE  285 (404)
T ss_pred             ccCCCceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            888766 887776654333322111100    1 11234444555556666553 345667788889999999998876 


Q ss_pred             CCccccC---C-Cc--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----------------CCCcEEEEEeCC
Q psy16848        403 GFPVEHT---P-SH--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----------------VGEEKIRLAPTP  460 (514)
Q Consensus       403 g~~~~~~---~-~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----------------~~~~~iRl~~~~  460 (514)
                      ++.+...   . .+  ++++.+.+   ..++...|   +++.+..+..|...                ...+.+|++++.
T Consensus       286 ~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l---~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~  359 (404)
T PRK14012        286 EVYLNGDLEQRVPGNLNVSFNYVE---GESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGR  359 (404)
T ss_pred             CEEEeCCccccCCCEEEEEEeCcC---HHHHHHhC---CCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecC
Confidence            4443221   1 12  33444332   34565555   36666666544321                124789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcC
Q psy16848        461 FHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+|++|+|++++.|+++++.++
T Consensus       360 ~~t~~dvd~~~~~l~~~~~~~~  381 (404)
T PRK14012        360 FTTEEEIDYAIELVRKSIGKLR  381 (404)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987763

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.93  E-value=1.6e-23  Score=210.27  Aligned_cols=199  Identities=16%  Similarity=0.166  Sum_probs=151.4

Q ss_pred             ceEEEEecCCCCCccccCHHHH---HHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        260 PKLVAFETVHSMTGAICPLKEL---CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       260 ~~~vv~~~~~nptG~~~~l~~l---~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      ++++++++||||||.+++.+++   .+.|.+++.++|+||+|......   .++....  ..+..++++||||.+|.+| 
T Consensus       131 ~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~---~s~~~~~--~~~~vi~l~SfSK~~gl~Gl  205 (339)
T PRK06959        131 LTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA---ASLAAHT--DRPGLVVLRSVGKFFGLAGV  205 (339)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc---ccchhcc--CCCCEEEEecChhhcCCcch
Confidence            4689999999999999995555   45566789999999999943321   1122111  1245799999999999778 


Q ss_pred             --eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE
Q psy16848        336 --GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI  413 (514)
Q Consensus       336 --G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  413 (514)
                        ||+++++++++.+......+    +.+.+.+.++.++|+.  .+..++.++.++++++++.+.|++.|+.+. +.+.+
T Consensus       206 RiGy~v~~~~li~~l~~~~~~~----~vs~~~q~a~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~~f  278 (339)
T PRK06959        206 RAGFVLAAPALLAALRDALGAW----TVSGPARHAVRAAFAD--AAWQAAMRERLAADGARLAALLRAHGFAVH-ATPLF  278 (339)
T ss_pred             heEEEecCHHHHHHHHHhcCCC----CCcHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcc-CcceE
Confidence              99999999999998876544    4677788888888863  345567889999999999999999987664 33445


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++.++   +..++.+.|. ++||.++...      ..+++|++++  .+++++++++++|+++++.+.
T Consensus       279 ~~~~~~---~~~~l~~~l~-~~GI~vr~~~------~~~~lRisi~--~~~~e~~~l~~al~~~~~~~~  335 (339)
T PRK06959        279 SWTDDP---RAAALHAALA-RRGIWTRYFA------PPPSVRFGLP--ADEAEWQRLEDALAECVPTLA  335 (339)
T ss_pred             EEEeCC---CHHHHHHHHH-hCCeEEEECC------CCCeEEEECC--CCHHHHHHHHHHHHHHHHHHh
Confidence            567654   3578889895 8999997431      2358999984  378899999999999887764

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.93  E-value=5.8e-23  Score=212.58  Aligned_cols=343  Identities=19%  Similarity=0.187  Sum_probs=223.4

Q ss_pred             ceeeecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHHHHH----HHHhHcCCCcE-EEEeccccccccc
Q psy16848         18 RVTCRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEKLEE----DVAKLHQKEAG-LVFTSCYVANDST   91 (514)
Q Consensus        18 ~~~~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~la~~~~~~~~-i~~~sGt~a~~~~   91 (514)
                      +..+++.++.-.-+|++.+++.+.+. +|+.+.+++....|. +..+++++    .+++++|.+.. ++++|||+|+..+
T Consensus        25 ~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~  103 (416)
T PRK00011         25 EEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGC-EYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAV  103 (416)
T ss_pred             hcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHH
Confidence            45677744333357899999887754 555555555544442 33444444    89999998876 6668999999888


Q ss_pred             hhhccccCCCceEEecCccchhhhhhh-----hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGI-----RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~-----~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +.++.+  |||.|+++.++|.+.....     ...|.+++.++.+. +                                
T Consensus       104 l~~l~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--------------------------------  148 (416)
T PRK00011        104 YFALLK--PGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-E--------------------------------  148 (416)
T ss_pred             HHHhcC--CCCEEEEeccccCCccccccccccccceeeEeecCcCc-c--------------------------------
Confidence            888865  9999999999997653211     11122222211100 0                                


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                                                               -...|.+
T Consensus       149 -------------------------------------------------------------------------~~~~d~~  155 (416)
T PRK00011        149 -------------------------------------------------------------------------TGLIDYD  155 (416)
T ss_pred             -------------------------------------------------------------------------cCCcCHH
Confidence                                                                                     0012556


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++.+.+   .+++++++++.  .+|...|+++|.++|+++|+++|+|++|..|..+...  . +.. .. ..|++++|
T Consensus       156 ~l~~~i~~---~~~k~v~~~~~--~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~--~-~~~-~~-~~di~~~S  225 (416)
T PRK00011        156 EVEKLALE---HKPKLIIAGAS--AYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGV--H-PSP-VP-HADVVTTT  225 (416)
T ss_pred             HHHHHHHh---cCCCEEEECCC--cCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCc--c-CCC-CC-CCcEEEec
Confidence            66666643   24677777543  3466778999999999999999999999866543211  0 111 12 56899999


Q ss_pred             Ccccc-cCCCeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        327 LGKAF-GNIGGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       327 ~sK~l-g~~GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      +||++ |+.||+++++ +++.+.+......+.++ +.....++++..++.....+++++.+++++++++++.+.|++.|+
T Consensus       226 ~~K~l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~-~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  304 (416)
T PRK00011        226 THKTLRGPRGGLILTNDEELAKKINSAVFPGIQG-GPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGF  304 (416)
T ss_pred             CCcCCCCCCceEEEeCCHHHHHHHHHHhCccccC-CccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998 4567898885 68888887655443222 222333344333443333445678899999999999999999887


Q ss_pred             cccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCC---CCCCCcEEEEEeC----CCCCHHHHHHHHHHH
Q psy16848        405 PVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPT---VPVGEEKIRLAPT----PFHTREMIDKFVTDL  474 (514)
Q Consensus       405 ~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~---~~~~~~~iRl~~~----~~~t~e~id~~~~~l  474 (514)
                      .+..  +.++++++.+++. .+..++.+.| +++||.+..+..+.   .+..+..+|++..    ..++++|++++++.|
T Consensus       305 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l  383 (416)
T PRK00011        305 RVVSGGTDNHLVLVDLRSKGLTGKEAEAAL-EEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELI  383 (416)
T ss_pred             eeeecCCCCeEEEEeCcccCCCHHHHHHHH-HHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHH
Confidence            6643  3446777777532 2567788878 59999997433221   1223457898542    257899999999999


Q ss_pred             HHHHHHc
Q psy16848        475 LAVWKSL  481 (514)
Q Consensus       475 ~~~l~~~  481 (514)
                      ++++...
T Consensus       384 ~~~~~~~  390 (416)
T PRK00011        384 ADVLDNP  390 (416)
T ss_pred             HHHHhcc
Confidence            9987753

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.92  E-value=4.6e-23  Score=210.43  Aligned_cols=322  Identities=17%  Similarity=0.181  Sum_probs=221.0

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccc----cCCCce
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGK----MIPGLH  103 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~----~~~gd~  103 (514)
                      .+|.+.+++.+.++..   .+.+....+..+..+++++.+++++|.+  ..+++++|++++..++.++..    -.+||.
T Consensus        32 ~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~  108 (373)
T TIGR03812        32 PHPIAVKAYDMFIETN---LGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPN  108 (373)
T ss_pred             chHHHHHHHHHHhhcC---CCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcE
Confidence            4567777777765542   1212222355677899999999999975  357788889988877765531    137799


Q ss_pred             EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848        104 YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  183 (514)
Q Consensus       104 v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (514)
                      |++++++|.+...+++..|.+++.++.++..                                                 
T Consensus       109 vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~-------------------------------------------------  139 (373)
T TIGR03812       109 IIVPESAHFSFEKAAEMLGLELRYAPLDEDY-------------------------------------------------  139 (373)
T ss_pred             EEECCcchHHHHHHHHHcCCeEEEEeeCCCC-------------------------------------------------
Confidence            9999999999877777777766654431000                                                 


Q ss_pred             ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEE
Q psy16848        184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV  263 (514)
Q Consensus       184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v  263 (514)
                                                                                ..|.+.+++.+.+    ++..+
T Consensus       140 ----------------------------------------------------------~~d~~~l~~~l~~----~~~~v  157 (373)
T TIGR03812       140 ----------------------------------------------------------TVDVKDVEDLIDD----NTIGI  157 (373)
T ss_pred             ----------------------------------------------------------CcCHHHHHHHHhh----CcEEE
Confidence                                                                      0144445554432    34444


Q ss_pred             EEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCCCccCceEEEcCCcccc-cC--CCeEE
Q psy16848        264 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDGQLHNMDIISGTLGKAF-GN--IGGYI  338 (514)
Q Consensus       264 v~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~~~~~~di~~~S~sK~l-g~--~GG~l  338 (514)
                      ++..++|++|...|+++|.++|+++|+++|+|++|+.+....  .+......+-...+.|.+.+|.||+. ++  .||++
T Consensus       158 v~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~  237 (373)
T TIGR03812       158 VGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGIL  237 (373)
T ss_pred             EEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEE
Confidence            444468999999999999999999999999999998543210  00011111111236788888999964 23  22556


Q ss_pred             EecHHHHHHHHhhcCceEec-------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc-cccCC
Q psy16848        339 VGTKNFIDTIRSYAAGFIFT-------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP-VEHTP  410 (514)
Q Consensus       339 ~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~  410 (514)
                      +.++++++.+.... .+...       .+.+....+++.++++.+.++++++..++..++++++.+.|+++++. +..+.
T Consensus       238 ~~~~~~~~~l~~~~-~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  316 (373)
T TIGR03812       238 FRSKSYLKYLSVDA-PYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPV  316 (373)
T ss_pred             EeCHHHHhhhcccC-cccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCC
Confidence            67888887764322 22111       13445667888888888767778889999999999999999998764 33455


Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .+++.+.+++   ..++.+.|. ++||.++...      .+.++|++++..+|++|+++++++|++
T Consensus       317 ~~~v~~~~~~---~~~v~~~L~-~~gi~v~~~~------~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       317 LNIVAFEVDD---PEEVRKKLR-DRGWYVSVTR------CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             ceEEEEEeCC---HHHHHHHHH-HCCceeccCC------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            6677777664   457888895 8899997432      246899999989999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=8.9e-24  Score=213.81  Aligned_cols=202  Identities=18%  Similarity=0.140  Sum_probs=150.2

Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHc-CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQH-GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~-gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      ++++++++++|+||||.+++.+++.++++.. ++++|+||+|.......   ....... ..+..+++.||||++|.+| 
T Consensus       146 ~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~---s~~~~~~-~~~~~iv~~S~SK~~~l~Gl  221 (354)
T PRK04635        146 DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEY---SVADLLA-SYPNLVVLRTLSKAFALAGA  221 (354)
T ss_pred             cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCc---chHHHHh-hCCCEEEEechHHHhhhhHH
Confidence            4689999999999999999999999988874 79999999998432111   1111111 1245788999999999768 


Q ss_pred             --eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-CccccCCCc
Q psy16848        336 --GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-FPVEHTPSH  412 (514)
Q Consensus       336 --G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~  412 (514)
                        ||+++++++++.+......+    +.+...+.++.++++....+.+.+.++.++++++++.+.|++++ +.+.++.+.
T Consensus       222 RlG~~i~~~~~~~~l~~~~~~~----~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~  297 (354)
T PRK04635        222 RCGFTLANEELIEILMRVIAPY----PVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGN  297 (354)
T ss_pred             HHhhhhCCHHHHHHHHhhcCCC----CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCc
Confidence              99999999999887654333    45666666667766532123345667778888999999999884 776777778


Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        413 IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       413 ~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      ++++++++   ..++.+.| +++||.++.+..   ...++++|++++   +.+|+++++++|++-
T Consensus       298 f~~~~~~~---~~~~~~~l-~~~gv~v~~~~~---~~~~~~lRis~~---~~e~~~~l~~al~~~  352 (354)
T PRK04635        298 YVLAKFDD---VDAVFKAL-WDAGIVARAYKD---PRLANCIRFSFS---NRAETDKLIGLIRNQ  352 (354)
T ss_pred             EEEEECCC---HHHHHHHH-HHCCEEEEECCC---CCCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence            88887763   56787777 599999985432   223569999997   899999999999753

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=4.3e-23  Score=209.38  Aligned_cols=205  Identities=18%  Similarity=0.140  Sum_probs=153.5

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI  334 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~  334 (514)
                      .++++++++++|+||||.+++.+++.++++.  +++++|+||+|.......   ....... ..+..++++||||.+|.+
T Consensus       150 ~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~---~~~~~~~-~~~~vi~~~SfSK~~gl~  225 (364)
T PRK04781        150 ASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVP---SAVGLLA-RYDNLAVLRTLSKAHALA  225 (364)
T ss_pred             ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCc---chHHHHh-hCCCEEEEecChhhcccc
Confidence            4568999999999999999998777777765  479999999998433211   1111111 225689999999999976


Q ss_pred             C---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-cccC
Q psy16848        335 G---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-VEHT  409 (514)
Q Consensus       335 G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~  409 (514)
                      |   ||+++++++++.+.+....+    +.+.+.+.++..+|+........+.++.++++++.+.+.|+++ ++. +.++
T Consensus       226 GlRvGy~v~~~~l~~~l~~~~~~~----~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~  301 (364)
T PRK04781        226 AARIGSLIANAELIAVLRRCQAPY----PVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPS  301 (364)
T ss_pred             cceeeeeeCCHHHHHHHHhccCCC----CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC
Confidence            8   99999999999998776544    4566677777777753211234455667788999999999887 654 4556


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      .+.++++++++   ..++.+.+ .++||.++++..+.  ...+++|++++   +++++++++++|+++.
T Consensus       302 ~g~f~~~~~~~---~~~~~~~l-~~~gI~v~~~~~~~--~~~~~~Ris~~---~~~~~~~l~~al~~~~  361 (364)
T PRK04781        302 QGNFLLVRFDD---AEAAFQAL-LAAGVVVRDQRAAP--RLSDALRITLG---TPEQNDRVLAALQRTQ  361 (364)
T ss_pred             CCcEEEEEcCC---HHHHHHHH-HHCCeEEeeCCCCC--CCCCeEEEeCC---CHHHHHHHHHHHHHHH
Confidence            77788888863   56788888 49999999886432  23579999998   7999999999998754

>PRK08354 putative aminotransferase; Provisional

Probab=99.92  E-value=1.4e-22  Score=201.19  Aligned_cols=293  Identities=20%  Similarity=0.130  Sum_probs=192.8

Q ss_pred             eeeecccC-CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccc-cccccchhhcc
Q psy16848         19 VTCRLSSV-QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCY-VANDSTLFTLG   96 (514)
Q Consensus        19 ~~~d~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt-~a~~~~l~~l~   96 (514)
                      ..+|++.+ +.+.+|.+.+++.+.+....    .  +.     ....+++.++++++. . +++++|+ +++..++ .+.
T Consensus         9 ~~i~l~~~~np~~p~~~~~a~~~~~~~~~----~--yp-----~~~~l~~~ia~~~~~-~-I~vt~G~~~al~~~~-~~~   74 (311)
T PRK08354          9 GLIDFSASVNPYPPEWLDEMFERAKEISG----R--YT-----YYEWLEEEFSKLFGE-P-IVITAGITEALYLIG-ILA   74 (311)
T ss_pred             ceeEecCCCCCCCCHHHHHHHHHHHHHhh----c--CC-----ChHHHHHHHHHHHCC-C-EEECCCHHHHHHHHH-Hhh
Confidence            47888655 44456788888877655321    1  11     135688899999884 3 5566665 4554444 443


Q ss_pred             ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848         97 KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH  176 (514)
Q Consensus        97 ~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (514)
                      .  +||.|+++.++|......++..|.+++.++. |++.+                                        
T Consensus        75 ~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l----------------------------------------  111 (311)
T PRK08354         75 L--RDRKVIIPRHTYGEYERVARFFAARIIKGPN-DPEKL----------------------------------------  111 (311)
T ss_pred             C--CCCeEEEeCCCcHHHHHHHHHcCCEEeecCC-CHHHH----------------------------------------
Confidence            3  8999999999999999888888887765432 33333                                        


Q ss_pred             CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848        177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD  256 (514)
Q Consensus       177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~  256 (514)
                                                                                              ++.++   
T Consensus       112 ------------------------------------------------------------------------~~~~~---  116 (311)
T PRK08354        112 ------------------------------------------------------------------------EELVE---  116 (311)
T ss_pred             ------------------------------------------------------------------------HHhhc---
Confidence                                                                                    22221   


Q ss_pred             CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        257 VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                        +++++++++|+||||.+++   +++|.++|+++|+++|+||+|.....+...        ...+..++++||||.++.
T Consensus       117 --~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~--------~~~~~vi~~~S~SK~~~l  186 (311)
T PRK08354        117 --RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES--------PEGENIIKLRTFTKSYGL  186 (311)
T ss_pred             --CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc--------cCCCcEEEEeccHhhcCC
Confidence              2467888999999999999   688888899999999999999843332111        113578999999999997


Q ss_pred             CC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Q psy16848        334 IG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP  410 (514)
Q Consensus       334 ~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  410 (514)
                      +|   ||+++   +.+.++.....+    ..+...++++.+.++.. .+.+.+.++.+.+.++.+.+.+      ...+.
T Consensus       187 ~GlRiG~~v~---~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l------~~~~~  252 (311)
T PRK08354        187 PGIRVGYVKG---FEEAFRSVRMPW----SIGSTGYAFLEFLIEDD-FEHLRKTMPLIWREKERFEKAL------YVKSD  252 (311)
T ss_pred             ccceeeeeee---hHHHHHHcCCCc----cCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhc------CCCCC
Confidence            78   99988   455555544333    34444444444444311 1122223333333333322221      23466


Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      ++++.+.++   +..++++.|. ++||.+.++..+..   .+++|++++   ++++.++++++++++
T Consensus       253 ~~~~~~~~~---~~~~~~~~l~-~~gv~v~~g~~f~~---~~~iRi~~~---~~~~~~~l~~al~~~  309 (311)
T PRK08354        253 ANFFIKDVG---DAEKFVEFLK-RNGILVRDCTSFGL---PGYIRFSVR---DREENEKLIRALREW  309 (311)
T ss_pred             CcEEEEECC---CHHHHHHHHH-HCCeEEEecccCCC---CCeEEEEeC---CHHHHHHHHHHHHHh
Confidence            777766654   3578888885 89999999987532   479999999   788889998888875

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.92  E-value=1.6e-23  Score=215.61  Aligned_cols=298  Identities=14%  Similarity=0.123  Sum_probs=199.1

Q ss_pred             ccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccc-hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCC
Q psy16848         55 ISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDST-LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHN  131 (514)
Q Consensus        55 ~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~-l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~  131 (514)
                      ..|..++.+++++++++++|.+  .+++++||+++...+ +.++...++||+|++++++|.+...+++..+..       
T Consensus        59 ~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~-------  131 (398)
T cd00613          59 SQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEP-------  131 (398)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhccc-------
Confidence            4567788999999999999876  566777677654444 333433224999999999999988776655410       


Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHH
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  211 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~  211 (514)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (398)
T cd00613         132 --------------------------------------------------------------------------------  131 (398)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCCceeeecchHHHHhhCCCCEEEecCC-ChhHHHHHHhhccCCCceEEEEecCCCCCccccC-HHHHHHHHHHcC
Q psy16848        212 SGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-LKELCEVSHQHG  289 (514)
Q Consensus       212 ~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~-l~~l~~l~~~~g  289 (514)
                                           .|++++.++.+ +.....+.+++..++++++|++++++ ++|.+.+ +++|.++|++||
T Consensus       132 ---------------------~g~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g  189 (398)
T cd00613         132 ---------------------LGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAG  189 (398)
T ss_pred             ---------------------CCcEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcC
Confidence                                 01222223211 11111233333335678999999985 8999988 599999999999


Q ss_pred             CEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-----CC-eEEEecHHHHHHHHhhcC----------
Q psy16848        290 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-----IG-GYIVGTKNFIDTIRSYAA----------  353 (514)
Q Consensus       290 v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-----~G-G~l~~~~~~~~~l~~~~~----------  353 (514)
                      +++|+|++++.+.. .     ....  ..++|++++|+||++++     +| |+++.++++++.+.....          
T Consensus       190 ~~livD~~~~~~~~-~-----~~~~--~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  261 (398)
T cd00613         190 ALVYVDGDNLNLTG-L-----KPPG--EYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNR  261 (398)
T ss_pred             CEEEEEeccccccC-C-----CChH--HcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCc
Confidence            99999999874431 0     0111  23689999999999832     23 889998888776522100          


Q ss_pred             -----------------ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc--CCCcEE
Q psy16848        354 -----------------GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH--TPSHII  414 (514)
Q Consensus       354 -----------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~  414 (514)
                                       ......+.+...+.++..++..+.++++++++++++++.+++.+.|++++.....  +..+.+
T Consensus       262 ~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v  341 (398)
T cd00613         262 AFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEF  341 (398)
T ss_pred             ceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEE
Confidence                             0000112334555555566666656677889999999999999999987543211  122334


Q ss_pred             EEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        415 PIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       415 ~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      .+.++.  ..+..++++.|+ ++||.+....    +...+.+|++++.++|++|+|+++++|
T Consensus       342 ~~~~~~~~~~~~~~~~~~L~-~~gi~~~~~~----~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         342 VLRLPPLYGIRAEDLAKALI-DGGFHAPTMY----LPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             EEEcCCcchHHHHHHHHhhh-hcCccccccc----cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            566654  345678999996 8999864321    234578999999999999999998764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=4.7e-23  Score=206.59  Aligned_cols=308  Identities=15%  Similarity=0.093  Sum_probs=216.0

Q ss_pred             CCceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccc-ccc
Q psy16848         16 SNRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCY-VAN   88 (514)
Q Consensus        16 ~g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt-~a~   88 (514)
                      .+...+|+..  +++..+|.+.+++.+.+.. +. ...+    . .....++++.++++++.    +..+++++|+ +++
T Consensus        17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~Y----~-~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i   89 (335)
T PRK14808         17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNS-DT-LRIY----Y-DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (335)
T ss_pred             CCCceeEecCCCCCCCCCHHHHHHHHHHhhh-hh-hhcC----C-CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHH
Confidence            4556788854  3344477889888887653 11 1101    1 11256788888888762    3346666665 556


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++      |.|++++++|......++..|.+++.++..+                                    
T Consensus        90 ~~~~~~~------d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~------------------------------------  127 (335)
T PRK14808         90 YVMMLMF------DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK------------------------------------  127 (335)
T ss_pred             HHHHHHh------CcEEECCCCHHHHHHHHHHcCCeEEEecCCC------------------------------------
Confidence            5555444      5689999999998888888887776554311                                    


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                                 ++...
T Consensus       128 ---------------------------------------------------------------------------~~~~~  132 (335)
T PRK14808        128 ---------------------------------------------------------------------------DLRIP  132 (335)
T ss_pred             ---------------------------------------------------------------------------cCCCC
Confidence                                                                                       00000


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      +..+     ++++++++++||||||.+++.+++.+++ ++++++|+||+|.... +..   ..+... ..+..++++|||
T Consensus       133 ~~~~-----~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~-~~~---~~~~~~-~~~~vi~~~S~S  201 (335)
T PRK14808        133 EVNV-----GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFH-GES---YVDLLK-KYENLAVIRTFS  201 (335)
T ss_pred             hhHc-----cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhc-CCc---hHHHHH-hCCCEEEEEech
Confidence            0011     2357999999999999999999999998 5899999999998432 211   111111 124689999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |.++.+|   ||+++++++++.+......+    +.+.+.+.++.++++..  +...+.++.+.++++++.+.|++.|+.
T Consensus       202 K~~~l~GlRvG~~v~~~~~~~~l~~~~~~~----~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~g~~  275 (335)
T PRK14808        202 KAFSLAAQRIGYVVSSEKFIDAYNRVRLPF----NVSYVSQMFAKVALDHR--EIFEERTKFIVEERERMKSALREMGYR  275 (335)
T ss_pred             hhccCcccceEEEEeCHHHHHHHHHhcCCC----CCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence            9999778   99999999999987765333    45667777777777632  344566677778888999999998888


Q ss_pred             cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +..+.++++++.++. .+..++.+.|. ++||.++..        ..++|++++   +.++++++++.|+++
T Consensus       276 ~~~~~g~f~~~~l~~-~~~~~~~~~l~-~~Gi~V~~~--------~~~~Risi~---~~~~~~~~~~~l~~~  334 (335)
T PRK14808        276 ITDSRGNFVFIFMEK-EEKERLLEHLR-AKNIAVRSF--------REGVRITIG---KREENDMILKELEVF  334 (335)
T ss_pred             ECCCCCeEEEEeCCC-ccHHHHHHHHH-HCCeEEEEC--------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence            777888899988874 34577888885 899999842        247999998   789999999998753

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.92  E-value=2.4e-23  Score=214.16  Aligned_cols=213  Identities=20%  Similarity=0.258  Sum_probs=156.7

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                      +++.+++.+++. .+++++|++++++...|...+    +++|+++|++||+++|+||+++ +|..|..+  ..+.+++..
T Consensus       237 ~l~~l~~~l~~~-~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~f--a~e~~gv~~  313 (464)
T TIGR00699       237 CLEEVEDLIKKW-HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFW--AHEHWNLDD  313 (464)
T ss_pred             HHHHHHHHHHhc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchh--HHHhcCCCC
Confidence            456667777643 345899999999999999987    9999999999999999999997 54433211  234445433


Q ss_pred             CceEEEcCCcccccCCCeEEEecHHHHHHHHhhcC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~GG~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      .+|++  +++|++++ ||+++.++.    +..... ....++..++..++++.++|+.+.++.   +.++.+++.+++.+
T Consensus       314 ~PDi~--t~gK~lg~-gG~~~~~~~----~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~  383 (464)
T TIGR00699       314 PPDMV--TFSKKFQT-AGYFFHDPA----FRPNKPYRQFNTWMGDPSRALILREIIQEIKRKD---LLENVAHVGDYLYT  383 (464)
T ss_pred             CCCEE--Eehhhhcc-CCccccchh----ccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHH
Confidence            49998  89999975 455544432    211111 122255789999999999999886655   77788888888888


Q ss_pred             HHHhC--CCc-c---cc--CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        398 ELIQI--GFP-V---EH--TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       398 ~L~~~--g~~-~---~~--~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      .|+++  .++ .   +.  ..|.++.+.+++......+.+.++ ++|+++.+.       +.+.+|+.++..+|++|+++
T Consensus       384 ~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~-~~Gvl~~~~-------g~~~ir~~Ppl~it~~eid~  455 (464)
T TIGR00699       384 GLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKAR-NNGVNIGGC-------GVKAIRLRPMLVFQKHHADI  455 (464)
T ss_pred             HHHHHHHhCCCceeeecccCeEEEEEEecCCHHHHHHHHHHHH-HCCcEEecC-------CCCeEEEeCCCCCCHHHHHH
Confidence            88775  243 1   23  567788898876444678888886 899998632       34689999999999999999


Q ss_pred             HHHHHHHH
Q psy16848        470 FVTDLLAV  477 (514)
Q Consensus       470 ~~~~l~~~  477 (514)
                      ++++|.++
T Consensus       456 ~~~~l~~~  463 (464)
T TIGR00699       456 FLEIISKI  463 (464)
T ss_pred             HHHHHHHh
Confidence            99999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.92  E-value=2.6e-23  Score=210.36  Aligned_cols=324  Identities=15%  Similarity=0.166  Sum_probs=216.5

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCc
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAG  109 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~  109 (514)
                      .++++.+++.+.+..|          .+..+..+++++++++++|.+++++++|||+|+.+++.++..  +||+++++. 
T Consensus        25 ~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~--~Gd~~~~~~-   91 (363)
T TIGR01437        25 VSDEVADAQKRGAQNY----------FEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVIT--RGNRYLVEN-   91 (363)
T ss_pred             CCHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhc--CCCcchhhc-
Confidence            3789999998887643          134588899999999999999999999999999999999876  999888875 


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      .|.+....                              ..+|....+|...+                            
T Consensus        92 ~~~s~~~~------------------------------~eVi~~~~~~~~~~----------------------------  113 (363)
T TIGR01437        92 LHDSKIEV------------------------------NEVVLPKGHNVDYG----------------------------  113 (363)
T ss_pred             cccccccc------------------------------ceEEEECccchhcC----------------------------
Confidence            56554311                              11111111111000                            


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEE-EecC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA-FETV  268 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv-~~~~  268 (514)
                                                        .++...+.+.|+++++++.. .....+.+++..+++|++++ ++++
T Consensus       114 ----------------------------------~~~~~~~~~~g~~~v~v~~~-~~~d~~~le~ai~~~t~ai~~v~~~  158 (363)
T TIGR01437       114 ----------------------------------APVETMVRLGGGKVVEAGYA-NECSAEQLEAAITEKTAAILYIKSH  158 (363)
T ss_pred             ----------------------------------CchHHHHHhcCCeEEEEcCC-CCCCHHHHHHhcChhceEEEEEecC
Confidence                                              02234556788888888742 23444555555567788766 5778


Q ss_pred             CCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCCeEEEecHHHHHH
Q psy16848        269 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIGGYIVGTKNFIDT  347 (514)
Q Consensus       269 ~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~GG~l~~~~~~~~~  347 (514)
                      +||+|.+.|+++|.++|++||+++|+|++|+...        ....  ..+.|++++|+||+++ +.+|++++++++++.
T Consensus       159 ~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~--------~~~~--~~g~D~~~~S~~K~l~gp~~G~l~~~~~~i~~  228 (363)
T TIGR01437       159 HCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL--------QKYY--RLGADLVIYSGAKAIEGPTSGLVLGKKKYIEW  228 (363)
T ss_pred             CCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch--------HHHH--HcCCCEEEEeCCcccCCCceEEEEEcHHHHHH
Confidence            8999999999999999999999999999997211        0011  2257999999999884 456999998888887


Q ss_pred             HHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccC--C-Cc---EEEEEeC-
Q psy16848        348 IRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHT--P-SH---IIPIKIG-  419 (514)
Q Consensus       348 l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~-~~---~~~i~l~-  419 (514)
                      ++....+............+++.++++.+.+.. .+..+...++.+++.+.|+++ |+.+...  . +.   .+.+.+. 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~-~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~  307 (363)
T TIGR01437       229 VKLQSKGIGRAMKVGKENILGLTAALEQYLSTG-KESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDE  307 (363)
T ss_pred             HHhccCCCcceeccCHHHHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEec
Confidence            754332221111222234556666776654322 234445556677899999987 7765421  1 11   1223333 


Q ss_pred             --CCccHHHHHHHHHHhCC--eEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        420 --NPALNTKICDMLLKEKG--HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       420 --~~~~~~~~~~~Ll~~~G--I~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                        .+.+..++.+.| ++++  |.+++  +   ....+.+|+.+.. ++++|++.++++|+++
T Consensus       308 ~~~g~~~~~l~~~L-~~~~~~I~~r~--~---~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~  362 (363)
T TIGR01437       308 SELGMTAADVVQAL-RQGEPAIYTRG--Y---KANEGIIEIDPRS-VTGGQLDIIVERIREI  362 (363)
T ss_pred             cCCCCCHHHHHHHH-hcCCCCEEEee--e---eecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence              245678999999 4777  66654  1   1224578998884 6799999999999876

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=9.3e-24  Score=213.28  Aligned_cols=283  Identities=16%  Similarity=0.108  Sum_probs=198.6

Q ss_pred             HHHHHHHHHhHcCCCc-EEEEecc-ccccccchhhccccCCC-ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         62 HEKLEEDVAKLHQKEA-GLVFTSC-YVANDSTLFTLGKMIPG-LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        62 ~~~~~~~la~~~~~~~-~i~~~sG-t~a~~~~l~~l~~~~~g-d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      ..++++++++++|.+. .|++++| ++++..++.++..  +| |.|+++.++|......++..|++++.++..+ +    
T Consensus        59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~--~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~-~----  131 (351)
T PRK01688         59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD-N----  131 (351)
T ss_pred             hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC--CCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC-C----
Confidence            4788999999988542 3555555 5667777777755  76 8999999999877666666666555433210 0    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                        |                                                             
T Consensus       132 ------------------~-------------------------------------------------------------  132 (351)
T PRK01688        132 ------------------W-------------------------------------------------------------  132 (351)
T ss_pred             ------------------C-------------------------------------------------------------
Confidence                              0                                                             


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEec
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDE  296 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~De  296 (514)
                                             ..|.+.+++.+     ++++++++++|+||||..++.+++.++++..  ++++|+||
T Consensus       133 -----------------------~~d~~~l~~~~-----~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDE  184 (351)
T PRK01688        133 -----------------------QLDLPAIADNL-----DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADE  184 (351)
T ss_pred             -----------------------CCCHHHHHHhc-----cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence                                   01333333332     3578999999999999999977766666543  68999999


Q ss_pred             cccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        297 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       297 a~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +|.......   ....... ..+..+++.||||++|.+|   ||+++++++++.+.+....+    +.+.+.+.++.++|
T Consensus       185 ay~~f~~~~---s~~~~~~-~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~----~v~~~~~~~a~~~L  256 (351)
T PRK01688        185 AYIEFCPQA---SLAGWLA-EYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPY----PLSTPVADIAAQAL  256 (351)
T ss_pred             chhhcCCCC---ChHHHHh-hCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC----CCCHHHHHHHHHHH
Confidence            998433111   1111111 2256899999999999878   99999999999888766554    45666666666776


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE  451 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~  451 (514)
                      +....+.+.+.++.+.+.++++.+.|+++ ++. +.++.++++++.++   +..++.+.|+ ++||.++++..+.  ..+
T Consensus       257 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~---~~~~l~~~L~-~~gi~vr~~~~~~--~~~  330 (351)
T PRK01688        257 SPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT---ASSAVFKSLW-DQGIILRDQNKQP--GLS  330 (351)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC---CHHHHHHHHH-HCCeEEEECCCcC--CCC
Confidence            53212345667778888899999999988 664 55667778888775   3678999996 8999998755321  235


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      +++|++++   +++|+++++++|+
T Consensus       331 ~~iRis~~---~~~e~~~l~~al~  351 (351)
T PRK01688        331 NCLRITIG---TREECQRVIDALR  351 (351)
T ss_pred             CeEEEeCC---CHHHHHHHHHhhC
Confidence            79999999   7899999998873

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.92  E-value=1.5e-22  Score=209.56  Aligned_cols=216  Identities=17%  Similarity=0.140  Sum_probs=155.7

Q ss_pred             CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        257 VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                      .++++++++++||||||.+++   +++|.++|+++++++|+||+|........   +........+..++++||||. +.
T Consensus       177 ~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~---~~~~~~~~~~~vI~~~SfSK~-~~  252 (416)
T PRK09440        177 DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGII---FSEATPLWNPNIILCMSLSKL-GL  252 (416)
T ss_pred             CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcc---hhhcCccccCCeEEEeccccc-CC
Confidence            346789999999999999999   78899999999999999999973221100   001100013568999999996 66


Q ss_pred             CC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHH-HHHHHHHHHHHHHHHHHhC----CC
Q psy16848        334 IG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVE-LRAKHQDIVAYLRNELIQI----GF  404 (514)
Q Consensus       334 ~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~~----g~  404 (514)
                      +|   ||+++++++++.+.......  +.+.+.+.+.++..+++... ..+..+ +++.++++++.+.+.|.+.    ++
T Consensus       253 pGlRiG~~i~~~~l~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~  330 (416)
T PRK09440        253 PGVRCGIVIADEEIIEALSNMNGII--SLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPC  330 (416)
T ss_pred             CcceEEEEeCCHHHHHHHHHHHHHh--ccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCe
Confidence            68   99999999999888766544  33567788888888776321 112222 4666777778788877664    34


Q ss_pred             ccccCC-CcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCC------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        405 PVEHTP-SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPV------GEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       405 ~~~~~~-~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~------~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .+..+. +.++++.++. ..+..++.+.+ .++||.+.|+..+....      ..+++|++++  .+++++++++++|++
T Consensus       331 ~~~~p~gg~fiw~~~~~~~~~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~  407 (416)
T PRK09440        331 LIHKPEGAIFLWLWFKDLPITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAE  407 (416)
T ss_pred             EEecCCCceEEEEECCCCCCCHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHH
Confidence            444555 5577888876 34567888888 48999999998653221      1358999998  378999999999999


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      ++++.
T Consensus       408 ~~~~~  412 (416)
T PRK09440        408 EVEKA  412 (416)
T ss_pred             HHHHH
Confidence            88764

>PLN02397 aspartate transaminase

Probab=99.92  E-value=3.7e-23  Score=213.64  Aligned_cols=215  Identities=13%  Similarity=0.092  Sum_probs=150.2

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---CCCCccccCCCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE---HGAGIGERDGQL  317 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~---~~~~~~~~~~~~  317 (514)
                      |++.+++.+++. .++++++++++||||||.+++   +++|.++|++||+++|+||+|.....+.   ...++..... .
T Consensus       180 d~~~l~~~l~~~-~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~-~  257 (423)
T PLN02397        180 DFDGLLEDLKAA-PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVE-D  257 (423)
T ss_pred             CHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHh-c
Confidence            556666666544 356889999999999999999   7888999999999999999999444332   1111111111 1


Q ss_pred             cCceEEEcCCcccccCCC---eEEE--e-cHHHHHH----HHhhcCceEeccCCcHHHHHHHHHHHHHh--hh---chHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIV--G-TKNFIDT----IRSYAAGFIFTTSLPPTVLAGAREAIRIL--SS---QEGV  382 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~--~-~~~~~~~----l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~---~~~~  382 (514)
                      .+..++++||||.++.+|   ||++  . ++++++.    +.......  ..+.+...+.++..+|+..  .+   +.++
T Consensus       258 ~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~  335 (423)
T PLN02397        258 GHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPM--YSNPPIHGASIVATILGDPELFSEWTKELK  335 (423)
T ss_pred             CCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcc--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            235799999999999878   9984  3 5555443    33322222  2245666677766666421  11   2256


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC----CccccCCCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        383 ELRAKHQDIVAYLRNELIQIG----FPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      ++++.++++++.+.+.|++++    +.+..+++++ +++.++     .+++++|+++.||.+.       +  .+  |++
T Consensus       336 ~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~-----~~~~~~Ll~~~~V~v~-------~--~~--Ri~  399 (423)
T PLN02397        336 GMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN-----KEQVDRMTKEYHIYMT-------R--DG--RIS  399 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC-----HHHHHHHHHhCCEEEC-------C--CC--eEE
Confidence            788899999999999999986    6655666664 444442     4689999888899985       1  12  999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHH
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      ++ ..+.+++++++++|+++++
T Consensus       400 ~~-~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        400 MA-GLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             Ee-eCCHHHHHHHHHHHHHHHh
Confidence            96 4789999999999999975

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.92  E-value=6.8e-23  Score=213.34  Aligned_cols=347  Identities=16%  Similarity=0.133  Sum_probs=228.8

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc--chHHH-HHHHHHHhHcCCCcE-E-EE---eccccccc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN--SLFHE-KLEEDVAKLHQKEAG-L-VF---TSCYVAND   89 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~--~~~~~-~~~~~la~~~~~~~~-i-~~---~sGt~a~~   89 (514)
                      ..+++....-.-.|.+++++...+. +|+.+++++++..|.  .+..+ ..++++++++|.+.. + +.   +||+++|.
T Consensus        35 ~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~  114 (452)
T PTZ00094         35 EGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANF  114 (452)
T ss_pred             cCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHH
Confidence            4555533333346889999999885 676566666666664  22223 255689999987532 2 33   57999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++.+  +||+|++++..|.+.+..........+..                    ...                  
T Consensus       115 ~v~~al~~--~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~--------------------~~~------------------  154 (452)
T PTZ00094        115 AVYTALLQ--PHDRIMGLDLPSGGHLTHGFYTAKKKVSA--------------------TSI------------------  154 (452)
T ss_pred             HHHHHhcC--CCCEEEecccccCCccccccccccccccc--------------------cee------------------
Confidence            99999866  99999999999988764332110000000                    000                  


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCC
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HND  244 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d  244 (514)
                                                                                      +.++..++     ..|
T Consensus       155 ----------------------------------------------------------------~~~~~~~~~~~~g~id  170 (452)
T PTZ00094        155 ----------------------------------------------------------------YFESLPYQVNEKGLID  170 (452)
T ss_pred             ----------------------------------------------------------------eeeeeecccCCCCCcC
Confidence                                                                            00011111     126


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+++.+++.   +++++++.  ++.+|...|+++|.++|+++|+++++|++|++|..+....   +. . ..++|+++
T Consensus       171 ~~~L~~~l~~~---~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~---~~-~-~~~~D~l~  240 (452)
T PTZ00094        171 YDKLEELAKAF---RPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVL---PS-P-FPYADVVT  240 (452)
T ss_pred             HHHHHHHHHHh---CCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCC---CC-C-CCCCcEEE
Confidence            77777777543   24566553  3468999999999999999999999999999888743221   11 1 12689999


Q ss_pred             cCCcccc-cCCCeEEEecHHHHHHHHhhcCceE---eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        325 GTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFI---FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       325 ~S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      +|+||++ |+.||+++.++++.+.+........   +..+.++...+++.++++.+.....+++++++.++.+++.+.|.
T Consensus       241 ~S~hK~l~GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~  320 (452)
T PTZ00094        241 TTTHKSLRGPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALE  320 (452)
T ss_pred             cCCccCCCCCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999988 6777888777655443332211111   12255677788888889888666777889999999999999998


Q ss_pred             hCCCccccC--CCcEEEEEeCC-CccHHHHHHHHHHhCCeEEe-cccCCCC-CCCCcEEEEEeCCCCC----HHHHHHHH
Q psy16848        401 QIGFPVEHT--PSHIIPIKIGN-PALNTKICDMLLKEKGHYVQ-PINYPTV-PVGEEKIRLAPTPFHT----REMIDKFV  471 (514)
Q Consensus       401 ~~g~~~~~~--~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~-~~~~~~~-~~~~~~iRl~~~~~~t----~e~id~~~  471 (514)
                      +.|+++..+  ..+...+.+.. +....++...| +++||.+. ++..+.. ....+.+|++++..+|    ++|+++++
T Consensus       321 ~~g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~  399 (452)
T PTZ00094        321 KRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLL-DAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVA  399 (452)
T ss_pred             hCCcEEecCCCCCceEeecCCcCCCCHHHHHHHH-HHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHH
Confidence            888776542  23444444442 23456677777 68899995 3322211 1124799999965554    99999999


Q ss_pred             HHHHHHHHH
Q psy16848        472 TDLLAVWKS  480 (514)
Q Consensus       472 ~~l~~~l~~  480 (514)
                      +.|+++++.
T Consensus       400 ~~l~~~~~~  408 (452)
T PTZ00094        400 DFLDRAVKL  408 (452)
T ss_pred             HHHHHHHHH
Confidence            999998875

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.92  E-value=5.7e-23  Score=211.54  Aligned_cols=335  Identities=14%  Similarity=0.061  Sum_probs=211.8

Q ss_pred             ceeeecccCCC---CCChhHHHHHHHHHHHhCC--CCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEE---Eecccc
Q psy16848         18 RVTCRLSSVQY---KVPKGGRKCLGEALEKFGT--GAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLV---FTSCYV   86 (514)
Q Consensus        18 ~~~~d~~~~~~---~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~---~~sGt~   86 (514)
                      ...+|+....+   ..++...+++.+++.....  ....+....|..++.+++.+++.+..+   .+..+.   +.+|++
T Consensus        29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~  108 (404)
T PTZ00376         29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTG  108 (404)
T ss_pred             cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcch
Confidence            46688876543   2333455666666543211  112233334555555555554433321   122344   334445


Q ss_pred             ccccchh---hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         87 ANDSTLF---TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        87 a~~~~l~---~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      |...++.   ++..  |||.|+++.++|......++..|++++.++..+.+                             
T Consensus       109 al~~~~~~l~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~-----------------------------  157 (404)
T PTZ00376        109 ALRLGFEFLKRFLP--AGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPK-----------------------------  157 (404)
T ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCceeeccccCcc-----------------------------
Confidence            5544443   4444  99999999999999998888888888766531000                             


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                     +.                                             ..
T Consensus       158 -------------------------------~~---------------------------------------------~~  161 (404)
T PTZ00376        158 -------------------------------TK---------------------------------------------GL  161 (404)
T ss_pred             -------------------------------cC---------------------------------------------Cc
Confidence                                           00                                             01


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---CCCCccccCCCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE---HGAGIGERDGQL  317 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~---~~~~~~~~~~~~  317 (514)
                      |++.+++.+++. +++++++++++||||||.+++   +++|.++|++|++++|+||+|.....+.   ....+..... .
T Consensus       162 d~~~l~~~~~~~-~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~-~  239 (404)
T PTZ00376        162 DFDGMLEDLRTA-PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAE-R  239 (404)
T ss_pred             CHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHh-c
Confidence            556666666543 234678899999999999999   7888999999999999999998433221   0101111111 1


Q ss_pred             cCceEEEcCCcccccCCC---eEE---EecHHHHHHHH----hhcCceEeccCCcHHHHHHHHHHHHHhh--h---chHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYI---VGTKNFIDTIR----SYAAGFIFTTSLPPTVLAGAREAIRILS--S---QEGV  382 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l---~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~---~~~~  382 (514)
                      .+..++++||||.++.+|   ||+   ++++++++.+.    ......  ..+.+...+.++..+++...  +   ....
T Consensus       240 ~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  317 (404)
T PTZ00376        240 GVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPM--YSSPPIHGARIADRILSDPELRAEWLSELK  317 (404)
T ss_pred             CCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhh--cCCCchHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            236799999999999768   998   56777655443    222111  12346677777777775211  1   2245


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCC----ccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        383 ELRAKHQDIVAYLRNELIQIGF----PVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      +.+++++++++.+.+.|++.++    .+..+.++ ++++.+     ..+++++|+++.||.+.|+          . |++
T Consensus       318 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~-----~~~~~~~L~~~~~v~v~p~----------~-Ris  381 (404)
T PTZ00376        318 EMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGL-----TKEQVERLIEKYHIYLLDN----------G-RIS  381 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCC-----CHHHHHHHHHhCCEeecCC----------C-eEE
Confidence            5677889999999999998753    33445555 444544     2578889986669998754          1 999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++. .+.++++.++++|+++++.
T Consensus       382 ~~~-~~~~~~~~~~~~l~~~~~~  403 (404)
T PTZ00376        382 VAG-LTSKNVDYVAEAIHDVVRN  403 (404)
T ss_pred             Eec-cCHHhHHHHHHHHHHHHhc
Confidence            963 7899999999999998754

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.92  E-value=8.6e-23  Score=212.14  Aligned_cols=226  Identities=14%  Similarity=0.075  Sum_probs=155.0

Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHN  319 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~  319 (514)
                      +....+.+++..++++|++++++|+||||.+++   +++|+++|++  +++++|+||+|.....  ...++...   ..+
T Consensus       227 f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~~~~---~~~  301 (527)
T PRK09275        227 WQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSLFAV---LPY  301 (527)
T ss_pred             CCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCHHHh---CCC
Confidence            444445555666778999999999999999999   7888999965  4999999999984321  11122111   235


Q ss_pred             ceEEEcCCcccccCCC---eEEEecHH-----HHHHH--------------------------------HhhcCceEecc
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGTKN-----FIDTI--------------------------------RSYAAGFIFTT  359 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~~~-----~~~~l--------------------------------~~~~~~~~~~~  359 (514)
                      ..+++.||||.++.+|   ||++++++     +++.+                                +......  +.
T Consensus       302 ~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~--t~  379 (527)
T PRK09275        302 NTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNH--TA  379 (527)
T ss_pred             CEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhh--cc
Confidence            7899999999999888   99998876     33322                                1222222  33


Q ss_pred             CCcHHHHHH-H----HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE-EEEEeCC-------------
Q psy16848        360 SLPPTVLAG-A----REAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI-IPIKIGN-------------  420 (514)
Q Consensus       360 ~~~~~~~~a-~----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~i~l~~-------------  420 (514)
                      +.+.+.+.+ +    .+.++. .+...+++++.++++++.+.+.|. .++....+.+.+ +++.++.             
T Consensus       380 ~~s~p~Q~a~al~~~~all~~-~~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~  457 (527)
T PRK09275        380 GLSTPQQVQMALFSLFALLDE-EDAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADY  457 (527)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhh
Confidence            455555543 2    233432 234567788888999888877772 123223455554 3344432             


Q ss_pred             ---CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        421 ---PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       421 ---~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                         ..+..+++.+|+++.||.+.||..+..  .+.++|++++ ..+++++.++.++|+++++++.
T Consensus       458 l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~--~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y~  519 (527)
T PRK09275        458 LKKNYSPVDLLFRLAEETGVVLLPGGGFGG--PEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEYY  519 (527)
T ss_pred             hhccCCHHHHHHHHHhcCCEEEeCchhhCC--CCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHHH
Confidence               124678889998889999999997653  2578999997 4578999999999999988764

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.92  E-value=8.2e-23  Score=210.97  Aligned_cols=344  Identities=15%  Similarity=0.131  Sum_probs=214.7

Q ss_pred             ChhHH--HHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc---CCCcEEEEeccccccccchhhcccc-------
Q psy16848         31 PKGGR--KCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH---QKEAGLVFTSCYVANDSTLFTLGKM-------   98 (514)
Q Consensus        31 ~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~i~~~sGt~a~~~~l~~l~~~-------   98 (514)
                      ||+|.  +++.+++++.........  .-..+...++.++++++.   +.++++|++||++|++.|++.....       
T Consensus        56 ~p~v~~~~ai~~q~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~  133 (431)
T TIGR03251        56 HPALVDDLAFRARLGAAAVNKPSNS--DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQA  133 (431)
T ss_pred             ChhhhHHHHHHHHHHHhhhcccccC--CCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhh
Confidence            79999  999999987432111111  112355667777777774   3467899999999999999865421       


Q ss_pred             -C-----CCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         99 -I-----PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        99 -~-----~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                       +     +...|.....+|..+..++..++.....-..                .|..   .+. +.+.+..+.      
T Consensus       134 ~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~----------------~~~~---~~~-~~~~p~~~~------  187 (431)
T TIGR03251       134 RGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTAR----------------FPKF---DWP-RIDNPKLTF------  187 (431)
T ss_pred             cCCCCCCCceEEEECCccCCcchhhhhccCCccccccC----------------CCCC---CCc-cCCCCcccC------
Confidence             1     1245667778888888777766642110000                0000   000 000000000      


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                        .++.                 ..                                    ...+.....++++.+++.+
T Consensus       188 --~~~~-----------------~~------------------------------------~~~~~~~~~~~l~~~~~~~  212 (431)
T TIGR03251       188 --PLDA-----------------PN------------------------------------LDQVIALEEEALRQARAAF  212 (431)
T ss_pred             --Cccc-----------------cc------------------------------------cchhhHHHHHHHHHHHHHH
Confidence              0000                 00                                    0000001122445556666


Q ss_pred             hhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      ... .+++++++++++++..|...+    +++|+++|++||+++|+||+++ +|..|..+  ..+..++  .+|++  ++
T Consensus       213 ~~~-~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~--a~~~~gv--~PDi~--~~  285 (431)
T TIGR03251       213 AER-PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAW--AYQQLGV--QPDIV--AF  285 (431)
T ss_pred             HhC-CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHH--HHHhcCC--CCCEE--Ee
Confidence            543 457999999999999998865    8999999999999999999999 55543211  1234444  79999  78


Q ss_pred             cccccCCCeEEEecH--HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--C
Q psy16848        328 GKAFGNIGGYIVGTK--NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--G  403 (514)
Q Consensus       328 sK~lg~~GG~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g  403 (514)
                      +|.+.. +|++..++  ++.............+++.+++.++++.++|+.+.++.   ..++++++.+++.+.|+++  .
T Consensus       286 gK~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~  361 (431)
T TIGR03251       286 GKKTQV-CGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEER---LVDNARVQGAHLLARLHELAAE  361 (431)
T ss_pred             cccCcc-ceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHh
Confidence            998733 56665543  22221111111122244788999999999999886655   5566677777777666553  2


Q ss_pred             Cc-c---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        404 FP-V---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       404 ~~-~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .+ +   +...|.++.+++++......+.+.|+ ++||.+.+.       +.+.+|++++..+|++|++++++++++
T Consensus       362 ~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~-~~Gvl~~~~-------g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       362 FPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLY-REGVLLLGC-------GERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             CccceecccccceeEEEEeCCHHHHHHHHHHHH-hCCeEEecC-------CCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            22 2   23456788888876544567888996 999998642       235799999999999999999999876

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.91  E-value=6.8e-23  Score=195.90  Aligned_cols=327  Identities=17%  Similarity=0.154  Sum_probs=223.0

Q ss_pred             eeecccCCCCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcccc
Q psy16848         20 TCRLSSVQYKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKM   98 (514)
Q Consensus        20 ~~d~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~   98 (514)
                      ++||.|..+-+ +|++.+++.++-..       ....||.++...++++++++++|.+.++|++|||+||+.+|.+.++ 
T Consensus         1 ~~~f~SDn~~g~~~~m~eam~~a~~~-------~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~-   72 (342)
T COG2008           1 MIDFRSDNVAGPTPEMREALAAANAV-------GDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQ-   72 (342)
T ss_pred             CCccccCccCCCCHHHHHHHHhcccc-------CCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcC-
Confidence            36787777765 89999888875532       2345788999999999999999998899999999999999999987 


Q ss_pred             CCCceEEecCccchhhhhhh--hcCC--CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         99 IPGLHYISDAGNHASMIQGI--RNSS--APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        99 ~~gd~v~~~~~~h~~~~~~~--~~~~--~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                       ||+.|++.+..|....++-  ...+  .+....+..                                           
T Consensus        73 -~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~-------------------------------------------  108 (342)
T COG2008          73 -PGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGA-------------------------------------------  108 (342)
T ss_pred             -CCCeEEEeccccceecccCcHHHHcCCceeccCCCC-------------------------------------------
Confidence             9999999999998876532  1111  111111100                                           


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                           .|                                            .-+.+.++..++.
T Consensus       109 ---------------------~G--------------------------------------------klt~e~v~~~i~~  123 (342)
T COG2008         109 ---------------------DG--------------------------------------------KLTPEDVEAAIRP  123 (342)
T ss_pred             ---------------------CC--------------------------------------------CcCHHHHHHhhcC
Confidence                                 00                                            0123334443332


Q ss_pred             c--cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        255 M--DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       255 ~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      .  ....+.+++.++.+|..|+++|   +++|.++|+++|+.|++|.+.-+...-..+.   +...+....|+++++++|
T Consensus       124 ~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~---~~~~~~~~~D~v~~~~tK  200 (342)
T COG2008         124 DDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGV---ALKTIKSYVDSVSFCLTK  200 (342)
T ss_pred             CCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCC---CHHHHHhhCCEEEEeccc
Confidence            1  1223566777777779999999   6888999999999999999987443321221   112223478999999999


Q ss_pred             cccCCC-eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        330 AFGNIG-GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       330 ~lg~~G-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      .++.++ +++++++++++.+...++..+...+...+..++....|+.   .-....-.+..+++.+|.+.|... |+++.
T Consensus       201 ~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~---~~~~~~~~Han~mA~~La~~~~~~~G~~~~  277 (342)
T COG2008         201 GGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALED---DVWRLAADHANAMAARLAEGLEAKPGVKLA  277 (342)
T ss_pred             CCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhhhcCCceec
Confidence            998766 6778899999988876665533334455555555555542   222233344455689999999955 88886


Q ss_pred             c-CCCcEEEEEeCCCcc-HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        408 H-TPSHIIPIKIGNPAL-NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       408 ~-~~~~~~~i~l~~~~~-~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      . ++.+++.+.+++... .-.....+ ...|+.+.+..        ..+|+..+..++++++++++..+++++
T Consensus       278 ~~~~tN~vf~~l~~~~i~~l~~~~~~-~~~~~~~~~~~--------~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         278 FPVETNMVFVRLPESAIEALRLAGAL-FYRGVLIGAHG--------EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             cCCcccEEEEECChHHHHHHHhhchh-heeeeeccCCC--------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            5 578888888875311 11222222 24444443211        379999999999999999999998764

>KOG1401|consensus

Probab=99.91  E-value=6.6e-23  Score=196.96  Aligned_cols=351  Identities=23%  Similarity=0.202  Sum_probs=231.5

Q ss_pred             cCCceeeecccCCCC---C--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc---CCCcEEEEecccc
Q psy16848         15 KSNRVTCRLSSVQYK---V--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH---QKEAGLVFTSCYV   86 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~---~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~i~~~sGt~   86 (514)
                      .+|.-||||.+.-+.   +  ||++.+++.+++.+++++..++    -+.+ ..++++.+.+..   ..++++|++|||+
T Consensus        53 ~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~----~t~e-av~l~~~l~~~~~~~~~~rvff~nsGTe  127 (433)
T KOG1401|consen   53 PDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGY----FTLE-AVELEEVLSAVLGKGSAERVFFCNSGTE  127 (433)
T ss_pred             CCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCcc----ccHH-HHHHHHHHHhcccCCCccEEEEecCCcH
Confidence            477788888654333   2  7999999999999988765433    1223 567888888888   5778999999999


Q ss_pred             ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      ||+.||....+-                                        -..++...+.++|.|+|+||..      
T Consensus       128 Ane~ALK~Ark~----------------------------------------~~~~~~~~~t~~Iaf~nsyHG~------  161 (433)
T KOG1401|consen  128 ANETALKFARKF----------------------------------------TGKKHPEKKTKFIAFENSYHGR------  161 (433)
T ss_pred             HHHHHHHHHHHh----------------------------------------hcccCCccceeEEEEecCcCCc------
Confidence            999999765430                                        1122333445788888888622      


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                          ..|.+..++.                     +      .|-..+...--.++...++|..
T Consensus       162 --------------------tlgals~~~~---------------------s------~y~~~~~p~~p~v~~~~ynd~t  194 (433)
T KOG1401|consen  162 --------------------TLGALSVTGN---------------------S------KYGLPFDPIAPDVVTAEYNDST  194 (433)
T ss_pred             --------------------chhHHHhhcc---------------------c------ccCCCCCCCCCceeecccCCHH
Confidence                                1111110000                     0      0000000012245666688999


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCce
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      .+++.+..+..+ ++++++++.+...|..+.    +..|+++|+++|+++|.||+++ +|++|..+  ..++.+.  .||
T Consensus       195 ~l~k~~~~h~~~-IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~--a~e~~~~--~PD  269 (433)
T KOG1401|consen  195 ALEKLFESHKGE-IAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW--AQEYFGV--TPD  269 (433)
T ss_pred             HHHHHHHhCCCc-eEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH--HHHHhCc--CCc
Confidence            999999987544 899999999999998877    8999999999999999999999 67766543  3445554  899


Q ss_pred             EEEcCCcccccCCC---eEEEecHHHHHHHHhhcC---ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAA---GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       322 i~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      |.  ++.|.+++ |   |+.++++++.+.+.....   +.  +++.+++.|.++...++.+.+..   .++++.+..+.|
T Consensus       270 I~--t~aK~L~g-GlPigA~~v~~kV~~~i~~~~~l~hg~--Tf~gnpLacsa~~~~l~~l~~~e---~~k~vs~~~k~L  341 (433)
T KOG1401|consen  270 IT--TVAKPLGG-GLPIGATGVRDKVAEMISPGDHLYHGG--TFSGNPLACSAGIKVLDELKDPE---TLKNVSKIGKEL  341 (433)
T ss_pred             ce--eehhhccC-CceeEEEeehHHHHhhcCCCCccccCc--ccCCChhhhhHHHHHHHHHcCHH---HHHHHHHHHHHH
Confidence            99  99999987 6   889999999999876655   33  55889999999999999886554   666677777777


Q ss_pred             HHHHHhCCCc----ccc--CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe----CCCCCHH
Q psy16848        396 RNELIQIGFP----VEH--TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP----TPFHTRE  465 (514)
Q Consensus       396 ~~~L~~~g~~----~~~--~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~----~~~~t~e  465 (514)
                      ++.|.+....    ...  ..+.++.+.+..+  ..++.+... +.+.++.++..   ..-...+|+.+    +..+|+|
T Consensus       342 ~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p--~~~~~d~~~-~~~ll~~~~~~---~~~~~gv~i~P~~~l~~~~~~E  415 (433)
T KOG1401|consen  342 RKLLDEYLKKTPNSICGGVGRGLVIGFEFEGP--VYKFADAAR-EQGLLILTLGK---GLLEEGVRIAPIYLLTVEHTPE  415 (433)
T ss_pred             HHHHHHHhccCCCceeeeeeeEEEEEEEEeec--hhhhhhhhh-hhhHHHHHHhc---ccccceEEEeccccccccCcHH
Confidence            7777665211    111  1222333333221  223333331 33333322211   00112344444    2345689


Q ss_pred             HHHHHHHHHHHHHHHcC
Q psy16848        466 MIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       466 ~id~~~~~l~~~l~~~~  482 (514)
                      .++++++++.+.+.++.
T Consensus       416 ~i~~~l~i~~~~l~~~~  432 (433)
T KOG1401|consen  416 VIQRLLTILEKVLSALN  432 (433)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999888763

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.91  E-value=5.1e-23  Score=211.52  Aligned_cols=331  Identities=17%  Similarity=0.103  Sum_probs=209.2

Q ss_pred             eeeecccCCC-----CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEE--EEecc-c
Q psy16848         19 VTCRLSSVQY-----KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGL--VFTSC-Y   85 (514)
Q Consensus        19 ~~~d~~~~~~-----~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i--~~~sG-t   85 (514)
                      ..+|+..+.+     ..  .+.+.+++.+.++..  ....+....|..++.+.+.+++.+..+   .++.+  ++|+| +
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~--~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~  104 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETE--TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGT  104 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhcccc--cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCcc
Confidence            5688865532     11  246666666654431  111233344655666666655544432   12223  56665 4


Q ss_pred             cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         86 VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        86 ~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      +|+..++..+....|||.|+++.++|......++..|++++.++..+.+                               
T Consensus       105 ~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~-------------------------------  153 (396)
T PRK09257        105 GALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAA-------------------------------  153 (396)
T ss_pred             HHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccc-------------------------------
Confidence            5666666555323499999999999999998888888888766531000                               


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~  245 (514)
                                                   +.|                                             -|.
T Consensus       154 -----------------------------~~~---------------------------------------------~d~  159 (396)
T PRK09257        154 -----------------------------TKG---------------------------------------------LDF  159 (396)
T ss_pred             -----------------------------cCc---------------------------------------------cCH
Confidence                                         000                                             145


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-C-CCCCccccCCCccCc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-E-HGAGIGERDGQLHNM  320 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~-~~~~~~~~~~~~~~~  320 (514)
                      +.+++.+++. .+++++++++++|||||.+++   +++|.++|++|++++|+||+|.....+ . ...++..... ..+.
T Consensus       160 ~~l~~~~~~~-~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~-~~~~  237 (396)
T PRK09257        160 DAMLADLSQA-PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA-AGLE  237 (396)
T ss_pred             HHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh-cCCc
Confidence            5555555532 233578888999999999999   799999999999999999999843221 1 1111111111 1245


Q ss_pred             eEEEcCCcccccCCC---eEEEe---cHHHH----HHHHhhcCceEeccCCcHHHHHHHHHHHHHh-----hhchHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVG---TKNFI----DTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEGVELR  385 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~---~~~~~----~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~  385 (514)
                      .++++||||.++++|   ||+++   +++.+    ..+.......  ....+...+.++...++..     ...++++.+
T Consensus       238 vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r  315 (396)
T PRK09257        238 LLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTN--YSNPPAHGAAIVATILNDPELRAEWEAELEEMR  315 (396)
T ss_pred             EEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhh--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            799999999999878   99873   34433    3332222111  1134666666666666421     134567789


Q ss_pred             HHHHHHHHHHHHHHHhCC----CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        386 AKHQDIVAYLRNELIQIG----FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g----~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      ++++++++.+.+.|++.+    +.+..+.++ ++++.++     .+++..+++++||.+.|       .    .|++++ 
T Consensus       316 ~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~-----~~~~~~l~~~~~V~~~p-------~----~ri~~~-  378 (396)
T PRK09257        316 ERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT-----PEQVDRLREEFGVYAVG-------S----GRINVA-  378 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCC-----HHHHHHHHHcCCEEEcC-------C----CeEEEe-
Confidence            999999999999999874    444456555 4555553     24556666788999864       1    199996 


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAV  477 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~  477 (514)
                      ..+++++++++++|+++
T Consensus       379 ~~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        379 GLNESNIDYVAEAIAAV  395 (396)
T ss_pred             eCCHHHHHHHHHHHHhh
Confidence            37899999999999875

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.91  E-value=8.6e-23  Score=207.36  Aligned_cols=286  Identities=20%  Similarity=0.208  Sum_probs=199.5

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+...++++++++++|.+++++++||++|+..++.++.+  +||+|+++.+.|.+....++                  
T Consensus        38 ~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~--~gd~Vl~~~~~y~~~~~~~~------------------   97 (369)
T cd00614          38 GNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK--AGDHVVASDDLYGGTYRLFE------------------   97 (369)
T ss_pred             CChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcC--CCCEEEECCCCcchHHHHHH------------------
Confidence            4678899999999999999999999999999999998876  99999999998877653221                  


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus        98 --------------------------------------------------------------------------------   97 (369)
T cd00614          98 --------------------------------------------------------------------------------   97 (369)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                ..+...|.++..++.++.+.+++.++    +++++|++++++||+|.+.|+++|.++|+++|+++|+|++
T Consensus        98 ----------~~~~~~g~~~~~v~~~d~~~l~~~i~----~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t  163 (369)
T cd00614          98 ----------RLLPKLGIEVTFVDPDDPEALEAAIK----PETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNT  163 (369)
T ss_pred             ----------HHHhhcCeEEEEeCCCCHHHHHHhcC----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence                      11122345555666555555555553    3589999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      ++.+...         .....++|++++|++|.+++.    ||++++++ ++++.++.....+  +..+++..++++...
T Consensus       164 ~~~~~~~---------~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~--g~~~~p~~a~~~l~~  232 (369)
T cd00614         164 FATPYLQ---------RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLAL--GTILSPFDAWLLLRG  232 (369)
T ss_pred             CcchhcC---------ChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhh--CCCCCHHHHHHHHcC
Confidence            9855431         111337899999999999753    48998876 8888887655443  446777777666555


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-Cccc------------------cCCCcEEEEEeC-CCccHHHHHHHHH
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQIG-FPVE------------------HTPSHIIPIKIG-NPALNTKICDMLL  432 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~------------------~~~~~~~~i~l~-~~~~~~~~~~~Ll  432 (514)
                      ++     .+...+++..++.+++.+.|++.+ +..+                  ...++++.+.+. +.....+|.+.| 
T Consensus       233 l~-----tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l-  306 (369)
T cd00614         233 LK-----TLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNAL-  306 (369)
T ss_pred             CC-----CHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcC-
Confidence            54     234467788889999999998873 3211                  124668888886 333344455444 


Q ss_pred             HhCCeEEe----------ccc--CCCCC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        433 KEKGHYVQ----------PIN--YPTVP--------VGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       433 ~~~GI~v~----------~~~--~~~~~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +--.+..+          +..  .+..+        ..++.+|++++.    |+.+.+++.|++.+
T Consensus       307 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         307 KLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             CcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence            12221111          111  00000        125789999995    56666676666554

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN02242 methionine gamma-lyase

Probab=99.91  E-value=9.9e-23  Score=208.78  Aligned_cols=293  Identities=14%  Similarity=0.163  Sum_probs=197.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.+.+++++||++|+..++.++.+  +||+|+++.+.|......+...                 
T Consensus        75 ~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~--~GD~Vl~~~~~Y~~~~~~~~~~-----------------  135 (418)
T PLN02242         75 NPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCS--SGGHVVASNTLYGGTHALLAHF-----------------  135 (418)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHh-----------------
Confidence            577899999999999999999999999999999988876  9999999999887665332110                 


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (418)
T PLN02242        136 --------------------------------------------------------------------------------  135 (418)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                .....|.++++++..|.+.+++.+.+   .++++|++++++||+|.+.++++|.++|+++|+++|+|++|
T Consensus       136 ----------~~~~~G~~~~~~d~~d~e~l~~~i~~---~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~  202 (418)
T PLN02242        136 ----------LPRKCNITTTFVDITDLEAVKKAVVP---GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTF  202 (418)
T ss_pred             ----------hhhccCceEEEcCCCCHHHHHHhcCc---CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCC
Confidence                      00112444444544455555555432   14899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~  372 (514)
                      +.+...        ..  ..+.|++++|+||.+++.|    |++++++++++.+......  ...+..+++..++.+.  
T Consensus       203 ~~~~~~--------~~--~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~--  270 (418)
T PLN02242        203 APMVLS--------PA--RLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELS--  270 (418)
T ss_pred             CccCCC--------HH--HcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHH--
Confidence            733221        11  2257999999999997643    8999999998888765432  1112233333333222  


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc--------------------CCCcEEEEEeCCCccHHHHHHHHH
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH--------------------TPSHIIPIKIGNPALNTKICDMLL  432 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--------------------~~~~~~~i~l~~~~~~~~~~~~Ll  432 (514)
                      +.   ...+..++++..++++++.+.|++.++.+..                    ..++++.|.+.+......|++.+ 
T Consensus       271 ~~---l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l-  346 (418)
T PLN02242        271 ER---LPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYL-  346 (418)
T ss_pred             cC---CCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHh-
Confidence            22   2244557788899999999999988544431                    12458888886544456677766 


Q ss_pred             HhC----CeEEecccCCCC--------------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        433 KEK----GHYVQPINYPTV--------------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       433 ~~~----GI~v~~~~~~~~--------------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +--    .+.++-|.....                    ...++.+|+|++...   +.+.+++-|++.++.++
T Consensus       347 ~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~---~~~dli~dl~~al~~~~  417 (418)
T PLN02242        347 QNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTG---TLEQRWSQFEKALSAMK  417 (418)
T ss_pred             hcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCC---CHHHHHHHHHHHHHHhh
Confidence            222    222332221110                    012468999999432   35666666666666543

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.91  E-value=2.5e-22  Score=208.41  Aligned_cols=223  Identities=14%  Similarity=0.094  Sum_probs=152.9

Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHN  319 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~  319 (514)
                      +....+.+++..+++++++++++|+||||.+++   +++|.++|++|  ++++|+||+|.....  ...++...   ..+
T Consensus       226 ~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl~~~---~~~  300 (521)
T TIGR03801       226 WQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSLFAE---LPY  300 (521)
T ss_pred             CCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccchhhh---CCC
Confidence            334445555556678999999999999999999   78889999987  999999999984322  11122211   235


Q ss_pred             ceEEEcCCcccccCCC---eEEEecHH-----HHH--------HH------------------------HhhcCceEecc
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGTKN-----FID--------TI------------------------RSYAAGFIFTT  359 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~~~-----~~~--------~l------------------------~~~~~~~~~~~  359 (514)
                      ..+++.||||.+|.+|   ||++++++     +++        .+                        +......  +.
T Consensus       301 ~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~--~~  378 (521)
T TIGR03801       301 NTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNH--TA  378 (521)
T ss_pred             CEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhc--cC
Confidence            7899999999999888   99998764     221        11                        1111112  22


Q ss_pred             CCcHHHHH--H---HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc--ccCCCc-EEEEEeCCC----------
Q psy16848        360 SLPPTVLA--G---AREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSH-IIPIKIGNP----------  421 (514)
Q Consensus       360 ~~~~~~~~--a---~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~-~~~i~l~~~----------  421 (514)
                      +.+.+.+.  +   +.+.++. .+...++.++.++++++.+.+.|   |+.+  ..+.+. ++++.++.-          
T Consensus       379 g~s~p~Q~q~al~a~~all~~-~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~  454 (521)
T TIGR03801       379 GLSTPQQVQMALFSLFALMDK-ENAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFS  454 (521)
T ss_pred             CCCcHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHH
Confidence            33444333  2   3333332 23456778888888888888887   5443  335554 444555421          


Q ss_pred             ------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        422 ------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       422 ------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                            .+..+++.+|+++.||.+.||..+..+  ..++|++++ ..++++++++.++|+++++++
T Consensus       455 ~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~--~~~vRisla-~l~~~~~~~~~~rl~~~~~~~  517 (521)
T TIGR03801       455 SYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP--EWSVRVSLA-NLNEYDYAEIGRAIRKILDEY  517 (521)
T ss_pred             HHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC--CCeEEEEec-CCCHHHHHHHHHHHHHHHHHH
Confidence                  146788999988899999999976543  568999996 467899999999999998765

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK08637 hypothetical protein; Provisional

Probab=99.91  E-value=8e-22  Score=202.01  Aligned_cols=227  Identities=15%  Similarity=0.099  Sum_probs=151.3

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHH-----cCCEEEEecccccccc-CCCCCCcc-cc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQ-----HGALTFVDEVHAVGLY-GEHGAGIG-ER  313 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~-----~gv~li~Dea~~~g~~-g~~~~~~~-~~  313 (514)
                      |++.+++.++....++.+++++++||||||.+++   +++|.++|++     |++++|+||+|....+ +....++. ..
T Consensus       131 d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~  210 (388)
T PRK08637        131 DTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAAL  210 (388)
T ss_pred             CHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHh
Confidence            4555556555322344667889999999999999   6777777765     8999999999984433 22111111 11


Q ss_pred             CCCccCc--eEEEcCCcccccCCC---eEEEec------HHHHHHHHhhcC---ceEeccCCcHHHHHHHHHHHHHhh-h
Q psy16848        314 DGQLHNM--DIISGTLGKAFGNIG---GYIVGT------KNFIDTIRSYAA---GFIFTTSLPPTVLAGAREAIRILS-S  378 (514)
Q Consensus       314 ~~~~~~~--di~~~S~sK~lg~~G---G~l~~~------~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~-~  378 (514)
                      .+ ..+.  .++++|+||.++.+|   ||++.+      +++.+.+.....   ... ..+.|.+.+.++.+.++... .
T Consensus       211 ~~-~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~  288 (388)
T PRK08637        211 AN-LHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSN-ISNGPHPSQSAVLRALNSPEFD  288 (388)
T ss_pred             hc-ccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcc-cCCCCcHHHHHHHHHhCCHHHH
Confidence            11 1123  345569999988878   999854      577777654211   110 12567788888888775211 1


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhC----CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        379 QEGVELRAKHQDIVAYLRNELIQI----GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                      .+..+.+..++++++.+.+.|++.    ++.+..+.++ +++++++. .+..++++.|++++||.+.+.       +.++
T Consensus       289 ~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~l~~~l~~~~gv~~~~~-------~~~~  360 (388)
T PRK08637        289 KEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG-VDAEELRVHLLEKYGIGTIAL-------NETD  360 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh-HHHHHHHHHHhhhcceEEEec-------cCCc
Confidence            234455666788888888888765    4555565554 66677763 356789999865789988631       2568


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        454 IRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +|++++. .+.+++++++++|.++++.+
T Consensus       361 iRi~~~~-~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        361 LRIAFSC-VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             eEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence            9999984 67899999999999998765

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.90  E-value=5.1e-22  Score=202.81  Aligned_cols=359  Identities=16%  Similarity=0.156  Sum_probs=233.0

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      ..+.++..+++..-...       |+...-..+|++.+++++|.+++++++||+.|+..++.++.+  |||.| ++.+.+
T Consensus        32 ~ams~~~~~a~~~gd~~-------Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~--pGD~V-~~~~~f  101 (431)
T cd00617          32 GAMSDYQWAAMMLGDEA-------YAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLK--PGRTV-PSNMHF  101 (431)
T ss_pred             HHHHHHHHHHHHhCCCc-------cCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCC--CCCEE-ccCCcc
Confidence            35555555665532122       222344679999999999999999999999999999988876  99987 567777


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      ......+..+|+.++.++......            +.                                          
T Consensus       102 ~~~~~~i~~~Ga~pv~v~i~~~~~------------~~------------------------------------------  127 (431)
T cd00617         102 DTTRGHIEANGAVPVDLVIDEAHD------------AQ------------------------------------------  127 (431)
T ss_pred             cchHHHHHhCCCEeEEEecccccc------------cc------------------------------------------
Confidence            777777788888777554310000            00                                          


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHS  270 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~n  270 (514)
                                                                  ...+.. .-|.+.+++.+.+...+++++|+++.++|
T Consensus       128 --------------------------------------------~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N  163 (431)
T cd00617         128 --------------------------------------------ELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNN  163 (431)
T ss_pred             --------------------------------------------cccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcC
Confidence                                                        000000 12667777777654445689999999999


Q ss_pred             CC-ccccC---HHHHHHHHHHcCCEEEEecccccc-cc-------CCCCCCccccC-CCccCceEEEcCCcccccC-CCe
Q psy16848        271 MT-GAICP---LKELCEVSHQHGALTFVDEVHAVG-LY-------GEHGAGIGERD-GQLHNMDIISGTLGKAFGN-IGG  336 (514)
Q Consensus       271 pt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~g-~~-------g~~~~~~~~~~-~~~~~~di~~~S~sK~lg~-~GG  336 (514)
                      |+ |.+++   +++|.++|++||++||+|+++..+ ..       |..+.++.+.. ....-.|.+..|++|..+. .||
T Consensus       164 ~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG  243 (431)
T cd00617         164 TAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGG  243 (431)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccce
Confidence            97 89887   578899999999999999998743 11       11222221110 0012467888888886644 478


Q ss_pred             EEEecH-HHHHHHHhhc---CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc
Q psy16848        337 YIVGTK-NFIDTIRSYA---AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH  412 (514)
Q Consensus       337 ~l~~~~-~~~~~l~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  412 (514)
                      ++++++ ++++.++...   .++....+++....+++..+|+...+  .+.+.+++ ++++++.+.|++.|+++..|.+.
T Consensus       244 ~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~--~~~l~~~~-~~r~~l~~~L~~~G~~v~~P~Gg  320 (431)
T cd00617         244 FLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE--EDYLRHRV-EQVRYLGDRLDEAGVPIVEPAGG  320 (431)
T ss_pred             EEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc--HHHHHHHH-HHHHHHHHHHHHCCCCccCCCcc
Confidence            999876 6888887532   11111123455555555446654211  22233344 45589999999999998877654


Q ss_pred             -EEEEEeCC--------CccHHHHHHHHHHhCCeEEec-ccC--CCCCC-------CCcEEEEEeCC-CCCHHHHHHHHH
Q psy16848        413 -IIPIKIGN--------PALNTKICDMLLKEKGHYVQP-INY--PTVPV-------GEEKIRLAPTP-FHTREMIDKFVT  472 (514)
Q Consensus       413 -~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~-~~~--~~~~~-------~~~~iRl~~~~-~~t~e~id~~~~  472 (514)
                       ++++..+.        ...+.+++.+|+++.||.+.. |..  ...+.       ....+|++++. ..|.+++|.+++
T Consensus       321 h~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~  400 (431)
T cd00617         321 HAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAA  400 (431)
T ss_pred             eEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHH
Confidence             55555432        124788998888899999753 221  11111       13789999975 678999999999


Q ss_pred             HHHHHHHHcCCccCCcchhhHhHHHHHHH
Q psy16848        473 DLLAVWKSLDLPLSGLTCAQVNILLFIIL  501 (514)
Q Consensus       473 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  501 (514)
                      ++.+++++.....+...-.++|++++|.+
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~lr~f~~  429 (431)
T cd00617         401 AVIALYERREDIRGLRIVYEPKLLRHFTA  429 (431)
T ss_pred             HHHHHHhhHhhCCCeEEEecCccceeeec
Confidence            99999988654443334467777776544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=2.3e-21  Score=191.36  Aligned_cols=311  Identities=18%  Similarity=0.232  Sum_probs=223.4

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      .+..+++.+.+.. |.      ...  .+...++|+.+++++|.++++.++|||.|+.++|+++. .+|||.|+++..++
T Consensus        15 ~~e~~~v~~vl~s-g~------i~~--G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~-ig~GDeVI~ps~Tf   84 (374)
T COG0399          15 EEELAAVQEVLKS-GW------LTG--GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALA-IGPGDEVIVPSFTF   84 (374)
T ss_pred             hHHHHHHHHHHHc-CC------eec--ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcC-CCCCCEEEecCCch
Confidence            4556667777664 11      111  47889999999999999999999999999999999877 67999999999999


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      .++..++-..|+++                                                                  
T Consensus        85 vATan~i~~~Ga~P------------------------------------------------------------------   98 (374)
T COG0399          85 VATANAVLLVGAKP------------------------------------------------------------------   98 (374)
T ss_pred             HHHHHHHHHcCCeE------------------------------------------------------------------
Confidence            99887665555554                                                                  


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec--CCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~--~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                                                                    ++++  .+++..+.+.+++..+++||+|+..+..
T Consensus        99 ----------------------------------------------VFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~  132 (374)
T COG0399          99 ----------------------------------------------VFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLA  132 (374)
T ss_pred             ----------------------------------------------EEEecCCcccCCCHHHHHHHcccCCeEEEEehhc
Confidence                                                          4444  3457777888888888889999988875


Q ss_pred             CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEec-HHHH
Q psy16848        270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGT-KNFI  345 (514)
Q Consensus       270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~-~~~~  345 (514)
                         |...++++|.++|++||++||+|.+|++|...+..     ..|-  --|+.++||+  |.++. .||+++.+ +++.
T Consensus       133 ---G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk-----~vGt--~Gd~~~fSF~~~K~ittgEGGav~tnd~ela  202 (374)
T COG0399         133 ---GQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGK-----KVGS--FGDIGAFSFHATKNLTTGEGGAVVTNDEELA  202 (374)
T ss_pred             ---cCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCc-----cccc--ccceEEEEecCCCCccccCceEEEeCCHHHH
Confidence               88999999999999999999999999988752211     1111  1256666775  88855 46887665 6777


Q ss_pred             HHHHhhcCc--------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc--cc
Q psy16848        346 DTIRSYAAG--------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV--EH  408 (514)
Q Consensus       346 ~~l~~~~~~--------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~  408 (514)
                      +.++..+..              .+++..++.+.++.+...|+.++     ++.++.++..+++.+.|+++ ++.+  ..
T Consensus       203 ~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~-----~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~  277 (374)
T COG0399         203 EKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLD-----EINERRREIAQIYAEALKGLPGITLPPEP  277 (374)
T ss_pred             HHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence            776543211              23455778888888888887653     46677777777888888876 3332  22


Q ss_pred             CC--C--cEEEEEeCCC-ccHHHHHHHHHHhCCeE----EecccCC-------CC-----CC----CCcEEEEEeCCCCC
Q psy16848        409 TP--S--HIIPIKIGNP-ALNTKICDMLLKEKGHY----VQPINYP-------TV-----PV----GEEKIRLAPTPFHT  463 (514)
Q Consensus       409 ~~--~--~~~~i~l~~~-~~~~~~~~~Ll~~~GI~----v~~~~~~-------~~-----~~----~~~~iRl~~~~~~t  463 (514)
                      ..  .  .++.+.+++. ...+.+...| +++||.    ..|.+..       ..     +.    ..+.+.+.+...++
T Consensus       278 ~~~~~~~~~~~i~~~~~~~~R~~l~~~L-~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~  356 (374)
T COG0399         278 DGAVHAWHLYTILVDEEGISRDALMESL-KEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLS  356 (374)
T ss_pred             CCceeeeeeeEEEecCCCCCHHHHHHHH-HhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCC
Confidence            22  1  1444555553 5677888888 588555    3442211       00     11    24788999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy16848        464 REMIDKFVTDLLAVWKS  480 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~  480 (514)
                      ++|++++++++++++..
T Consensus       357 ~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         357 EEDVDRVIEALKEVLGS  373 (374)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999998753

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=9.3e-22  Score=197.55  Aligned_cols=313  Identities=19%  Similarity=0.150  Sum_probs=209.1

Q ss_pred             CceeeecccCC-CCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecccc-ccccch
Q psy16848         17 NRVTCRLSSVQ-YKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYV-ANDSTL   92 (514)
Q Consensus        17 g~~~~d~~~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~-a~~~~l   92 (514)
                      +...+|++.+. .++ +|.+.+++.+.+....  ...+    . .....++++.++++++.+ ..+++++|++ ++..++
T Consensus        17 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y----~-~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~   89 (337)
T PRK03967         17 GNYRIWLDKNENPFDLPEELKEEIFEELKRVP--FNRY----P-HITSDPLREAIAEFYGLDAENIAVGNGSDELISYLV   89 (337)
T ss_pred             CCceEEecCCCCCCCCCHHHHHHHHHHhhcCc--cccC----C-CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence            44568886544 223 6788888888775421  1111    1 123467888888888743 3455666655 444443


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      ..+    +||.|+++.+.|......++..|.+++.++..                                         
T Consensus        90 ~~~----~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~-----------------------------------------  124 (337)
T PRK03967         90 KLF----EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLK-----------------------------------------  124 (337)
T ss_pred             HHh----CCCeEEEeCCChHHHHHHHHHcCCeEEEeecC-----------------------------------------
Confidence            322    79999999999986655555556555543321                                         


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                            .++..+.+.+
T Consensus       125 ----------------------------------------------------------------------~~~~~d~~~l  134 (337)
T PRK03967        125 ----------------------------------------------------------------------EDFTIDGERI  134 (337)
T ss_pred             ----------------------------------------------------------------------CCCCcCHHHH
Confidence                                                                                  1111112222


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      ++.. ++++++++++|+||||.+++.++|.++++ +++++|+||+|.... +.   +...... ..+..++++||||.+|
T Consensus       135 ~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~-~~---~~~~~~~-~~~~vi~l~S~SK~~~  207 (337)
T PRK03967        135 AEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS-GK---SLIGLID-EYPNLILLRTFSKAFG  207 (337)
T ss_pred             HHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc-cc---chHHHHh-hCCCEEEEecchHhhc
Confidence            2221 45788889999999999999999999995 799999999998422 11   1111111 1245799999999999


Q ss_pred             CCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        333 NIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       333 ~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      .+|   ||+++++++++.+......+    +.+.+.+.++..+++..  +...+.++...+.++.+.+.|.+..   .++
T Consensus       208 l~GlRiG~iv~~~~~i~~~~~~~~~~----~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~---~~~  278 (337)
T PRK03967        208 LAGIRAGYAIANEEIIDALYRIKPPF----SLNILTMKIVRLALDHY--DLIEERIDYIIKERERVRRELGEYA---YPS  278 (337)
T ss_pred             chhhhheeeecCHHHHHHHHhhcCCC----CCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHhccCc---CCC
Confidence            768   99999999999888765443    55778888888777632  2444455566677777888887652   234


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+.++++.++       +.+.|. ++||.++++..    ...+++|++++   +.++.++++++|+++.+.++
T Consensus       279 ~~~~~~~~~~-------~~~~l~-~~gi~v~~~~~----~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~~~  336 (337)
T PRK03967        279 DANFLLLKLD-------AYDYLL-ENGIVVRKLSG----RLEGHIRVTVG---KREENDEFIKALKEIKEGYG  336 (337)
T ss_pred             CCcEEEEhHH-------HHHHHH-HCCEEEEeCCC----CCCCeEEEecC---CHHHHHHHHHHHHHHHHhcC
Confidence            5666666542       677885 88999986532    23569999998   78899999999998877653

>KOG1368|consensus

Probab=99.90  E-value=1.5e-22  Score=186.03  Aligned_cols=335  Identities=20%  Similarity=0.234  Sum_probs=236.0

Q ss_pred             eeeecccCCCCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccc
Q psy16848         19 VTCRLSSVQYKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGK   97 (514)
Q Consensus        19 ~~~d~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~   97 (514)
                      +.+|+-|...-. ..++++++.++...        --.||.++-..+||++.|+++|++.++|++|||++|+++++.-+ 
T Consensus        22 ~~vDLRSDTvT~PTdeMr~am~eA~vg--------DdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc-   92 (384)
T KOG1368|consen   22 RSVDLRSDTVTVPTDEMRRAMAEASVG--------DDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHC-   92 (384)
T ss_pred             eccccccccccCChHHHHHHHhhcccC--------cccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHh-
Confidence            456776554443 45777777775442        23456677789999999999999999999999999999999877 


Q ss_pred             cCCCceEEecCccchhhhhhh---hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         98 MIPGLHYISDAGNHASMIQGI---RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        98 ~~~gd~v~~~~~~h~~~~~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      ..+|..|++.+..|.-.++..   .+.|..+.++....                                          
T Consensus        93 ~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~------------------------------------------  130 (384)
T KOG1368|consen   93 HQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNEN------------------------------------------  130 (384)
T ss_pred             cCCCceEEeccchheeehhccChhhhccceeEeeeeCC------------------------------------------
Confidence            359999999999998887643   22344333332210                                          


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                           .|                                            .-++++.+..+..
T Consensus       131 ---------------------dg--------------------------------------------tm~ledIe~~ir~  145 (384)
T KOG1368|consen  131 ---------------------DG--------------------------------------------TMDLEDIEAAIRV  145 (384)
T ss_pred             ---------------------CC--------------------------------------------eeeHHHHHHhhcC
Confidence                                 00                                            0023344444432


Q ss_pred             cc----CCCceEEEEecCCCCCc-cccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        255 MD----VKIPKLVAFETVHSMTG-AICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       255 ~~----~~~~~~vv~~~~~nptG-~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      ..    .+.|++|++++-+|.+| .++|   ++++.++|++||+.|+.|.+.-+..--..+.+...+   -..+|.+.-+
T Consensus       146 ~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i---~~~fDSVsiC  222 (384)
T KOG1368|consen  146 PKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKI---CSAFDSVSIC  222 (384)
T ss_pred             CCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHH---HHhhhhhhhh
Confidence            21    24589999999888766 8899   588889999999999999998865432223222222   2246778779


Q ss_pred             CcccccCC-CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CC
Q psy16848        327 LGKAFGNI-GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GF  404 (514)
Q Consensus       327 ~sK~lg~~-GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  404 (514)
                      +||++|.+ |.++++++++++..+.++...+.+...+...+++++-+|+.-.    + ..+.-++++..+.+.+... ++
T Consensus       223 LSKglgAPVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~----~-~L~~dHk~A~~lAe~~~~~~~i  297 (384)
T KOG1368|consen  223 LSKGLGAPVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENV----P-LLRADHKRAKELAEYINTPEEI  297 (384)
T ss_pred             hhccCCCCcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcch----H-HHHHHHHHHHHHHHHhccccce
Confidence            99999864 6888999999999887776665556778888888888887432    1 4445556666666666665 36


Q ss_pred             cccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH-HHHHHH
Q psy16848        405 PVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL-LAVWKS  480 (514)
Q Consensus       405 ~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l-~~~l~~  480 (514)
                      ++..  .+.+++.+.+.. ..+.+++++.+ +++||.+.++..       ..+|+.++...|+++++.+...+ +.++..
T Consensus       298 ~v~v~a~etNiv~~~l~q~~~~~~~l~~~~-~k~gi~lm~~~s-------~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q  369 (384)
T KOG1368|consen  298 RVEVPAVETNIVNMVLCQARLTAEELCKFL-EKNGILLMGGAS-------RRIRIVLHHQVTDEDVEYVKSVLSKKFLKQ  369 (384)
T ss_pred             eeecchhhcceeeeecccccCCHHHHHHHH-HHCCeEEeeccc-------cceEEEEEEecCHHHHHHHHHHHHHHHHhh
Confidence            5543  366777776653 35688999999 599999975432       35999999999999999999999 555555


Q ss_pred             cCCcc
Q psy16848        481 LDLPL  485 (514)
Q Consensus       481 ~~~~~  485 (514)
                      ...++
T Consensus       370 ~~~~~  374 (384)
T KOG1368|consen  370 LTFCF  374 (384)
T ss_pred             cCccc
Confidence            54333

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.90  E-value=1.8e-22  Score=204.40  Aligned_cols=305  Identities=20%  Similarity=0.237  Sum_probs=205.3

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcCcccC--cchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhcccc--CCC-c
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTRNISG--NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGKM--IPG-L  102 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~~--~~g-d  102 (514)
                      .++.+.+++.+.++.....++......+  ..+..+++++++++++|.+  ..++++|+|+++..++.++...  .+| +
T Consensus        10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~   89 (353)
T TIGR03235        10 IDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKK   89 (353)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCC
Confidence            3678999998888652212111111111  2356789999999999875  3454555577888888776531  255 8


Q ss_pred             eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848        103 HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  182 (514)
Q Consensus       103 ~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (514)
                      +|+++..+|+++...++.                                                              
T Consensus        90 ~vi~~~~~~~s~~~~~~~--------------------------------------------------------------  107 (353)
T TIGR03235        90 HIITSAIEHPAVLEPIRA--------------------------------------------------------------  107 (353)
T ss_pred             eeeEcccccHHHHHHHHH--------------------------------------------------------------
Confidence            899999999987644321                                                              


Q ss_pred             eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHHHhhccC
Q psy16848        183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQVLENMDV  257 (514)
Q Consensus       183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~  257 (514)
                                                                     +...|.+++.++.     .|.+.+++.+    +
T Consensus       108 -----------------------------------------------~~~~G~~v~~v~~~~~~~~d~~~l~~~l----~  136 (353)
T TIGR03235       108 -----------------------------------------------LERNGFTVTYLPVDESGRIDVDELADAI----R  136 (353)
T ss_pred             -----------------------------------------------HHhcCCEEEEEccCCCCcCCHHHHHHhC----C
Confidence                                                           1112334444441     1334444443    4


Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-e
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-G  336 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G  336 (514)
                      ++++++++++++||+|.+.|+++|.++|+++|+++++|++++.|..        +......++|++++|++|++|+.| |
T Consensus       137 ~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~--------~~~~~~~~~D~~~~s~~K~~gp~g~g  208 (353)
T TIGR03235       137 PDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI--------TVDLSADRIDLISCSGHKIYGPKGIG  208 (353)
T ss_pred             CCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc--------cccccccCCCEEEeehhhcCCCCceE
Confidence            5689999999999999999999999999999999999999997764        112113478999999999988877 8


Q ss_pred             EEEecHHHHHH--HHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        337 YIVGTKNFIDT--IRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       337 ~l~~~~~~~~~--l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      +++.+++....  +......     .....+.+.....++.++++.+. .+.++++++++++.+++.+.|++.|+++..+
T Consensus       209 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~  287 (353)
T TIGR03235       209 ALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGVKLNGD  287 (353)
T ss_pred             EEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCeEEeCC
Confidence            98888764332  1111000     00122456677778888888764 5678889999999999999998888876533


Q ss_pred             C----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC-CCcEEEEEeC
Q psy16848        410 P----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV-GEEKIRLAPT  459 (514)
Q Consensus       410 ~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~-~~~~iRl~~~  459 (514)
                      .    ..++.+.++. .+..++.+.| ++ +|.++++..|.... +...+|.+++
T Consensus       288 ~~~~~~~i~~~~~~~-~~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g  339 (353)
T TIGR03235       288 PAETIPHILNFSIDG-VNSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMG  339 (353)
T ss_pred             cccccCCEEEEEeCC-cCHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcC
Confidence            2    2366666653 4567788888 35 89999998765432 2335566665

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.90  E-value=7e-22  Score=202.23  Aligned_cols=288  Identities=17%  Similarity=0.199  Sum_probs=197.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+|+++++++.|.+++++++||+.|+..++.++.+  +||+|+++.+.|.+.....                    
T Consensus        63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~--~Gd~Vl~~~~~y~~~~~~~--------------------  120 (400)
T PRK06234         63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALK--AGDHVVASDTLYGCTFALL--------------------  120 (400)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC--CCCEEEEecCccchHHHHH--------------------
Confidence            355789999999999999999999999998888887766  9999999999887765221                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (400)
T PRK06234        121 --------------------------------------------------------------------------------  120 (400)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEec
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDE  296 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~De  296 (514)
                              ...+...|+++++++..|.+.+++.+.    +++++|++++|+||+|.+.++++|.++|+++  |+++|+|+
T Consensus       121 --------~~~~~~~G~~v~~vd~~d~e~l~~~i~----~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDe  188 (400)
T PRK06234        121 --------NHGLTRYGVEVTFVDTSNLEEVRNALK----ANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDN  188 (400)
T ss_pred             --------HHHHhhCCeEEEEECCCCHHHHHHHhc----cCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEEC
Confidence                    112233455666666556555555553    4589999999999999999999999999997  99999999


Q ss_pred             cccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        297 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       297 a~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      +|+.+..+.       .  ...+.|++++|++|.+++.|    |++++++++++.++.......++..+++..++.+...
T Consensus       189 a~~~~~~~~-------~--l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~  259 (400)
T PRK06234        189 TFCTPYIQR-------P--LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRG  259 (400)
T ss_pred             CCCchhcCC-------c--hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence            998654321       1  12368999999999997644    9999999888887643222222456778777777666


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc------------------ccCCCcEEEEEeCCC-ccHHHHHHHHH
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV------------------EHTPSHIIPIKIGNP-ALNTKICDMLL  432 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~------------------~~~~~~~~~i~l~~~-~~~~~~~~~Ll  432 (514)
                      ++.+     +.++++..++..++.+.|++. .+..                  ....++++.|.+... ....+|.+.| 
T Consensus       260 l~tl-----~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l-  333 (400)
T PRK06234        260 MKTL-----QIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNV-  333 (400)
T ss_pred             cCcH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhC-
Confidence            6533     346666778888888888875 1110                  011355888988643 3345666666 


Q ss_pred             HhCCeEEecccCCC------C--------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        433 KEKGHYVQPINYPT------V--------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       433 ~~~GI~v~~~~~~~------~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +-.++..+-|....      .              ...++.+|+|++...    .+.+++-|+++++
T Consensus       334 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~----~~dl~~dl~~al~  396 (400)
T PRK06234        334 KLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLED----VDDIIADLKQALD  396 (400)
T ss_pred             CcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCC----HHHHHHHHHHHHH
Confidence            34454443222110      0              012478999999654    4444444444443

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.90  E-value=9.1e-22  Score=217.49  Aligned_cols=359  Identities=14%  Similarity=0.109  Sum_probs=231.2

Q ss_pred             CceeeecccCCCCCChhHHHHHHHHHHHhCCCCCC-cCcccCcchHHHHHHHHHHhHcCCC--c-E-EEEeccccccccc
Q psy16848         17 NRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGG-TRNISGNSLFHEKLEEDVAKLHQKE--A-G-LVFTSCYVANDST   91 (514)
Q Consensus        17 g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~--~-~-i~~~sGt~a~~~~   91 (514)
                      +..|.|.++........+.+++.+.+..+..+.++ +....-..+.+++.++++++++|.+  + . +|+.|+|+++..+
T Consensus        34 ~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlv  113 (805)
T PLN02724         34 GVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLV  113 (805)
T ss_pred             CCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHH
Confidence            35677877766555456666666665543333322 1122223567899999999999963  2 3 4444566776666


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhc---CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRN---SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~---~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ...+. ..+||+|+++..+|.+++...+.   .|+++..++.+...                                  
T Consensus       114 a~~l~-~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~----------------------------------  158 (805)
T PLN02724        114 GETFP-WSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAA----------------------------------  158 (805)
T ss_pred             HHHCC-CCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhcc----------------------------------
Confidence            65553 45899999999999887632211   13332222110000                                  


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                          +.. ....|.                                         + ..+.+.+
T Consensus       159 --------------------~~~-~~~~g~-----------------------------------------~-~~~~~~l  175 (805)
T PLN02724        159 --------------------NQP-TNSQGS-----------------------------------------V-VVKSRGL  175 (805)
T ss_pred             --------------------ccc-cccccc-----------------------------------------c-ccchhhh
Confidence                                000 000000                                         0 0000223


Q ss_pred             HHHHh------hccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--------CCEEEEeccccccccCCCCCCccccC
Q psy16848        249 TQVLE------NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--------GALTFVDEVHAVGLYGEHGAGIGERD  314 (514)
Q Consensus       249 ~~~l~------~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--------gv~li~Dea~~~g~~g~~~~~~~~~~  314 (514)
                      ++.++      ....+++++|.+++.+|.+|.+.|++.+.++++..        ++++++|.+++.|..        +.+
T Consensus       176 ~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~--------piD  247 (805)
T PLN02724        176 QRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTS--------PPD  247 (805)
T ss_pred             hhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCC--------CCC
Confidence            33221      11235678999999999999999998775555532        358999999997764        222


Q ss_pred             CCccCceEEEcCCccccc-CCC-eEEEecHHHHHHHHhhcCceE---------------------e-ccCCcHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFIDTIRSYAAGFI---------------------F-TTSLPPTVLAGAR  370 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~~l~~~~~~~~---------------------~-~~~~~~~~~~a~~  370 (514)
                      ....++|++++|+||++| +.| |+++.++++++.+.+...+.+                     | ..+.+....+++.
T Consensus       248 v~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~  327 (805)
T PLN02724        248 LSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALR  327 (805)
T ss_pred             hhhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHH
Confidence            223489999999999998 667 999999888877664322110                     0 1245667778888


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-------CccccC---------CCcEEEEEeCCCc---cHHHHHHHH
Q psy16848        371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-------FPVEHT---------PSHIIPIKIGNPA---LNTKICDML  431 (514)
Q Consensus       371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-------~~~~~~---------~~~~~~i~l~~~~---~~~~~~~~L  431 (514)
                      ++++++.+.+++++.++.+++.+++.+.|+++.       +.+..+         +++++.|.+.+..   .....+..|
T Consensus       328 aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l  407 (805)
T PLN02724        328 HGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKL  407 (805)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHH
Confidence            899988776888999999999999999998872       444432         3567777765321   112224455


Q ss_pred             HHhCCeEEecccCCCCCC--------------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        432 LKEKGHYVQPINYPTVPV--------------------------------GEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       432 l~~~GI~v~~~~~~~~~~--------------------------------~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.++||.++.|.+|....                                ..+.+|+|++.++|.+||+++++.|++.+.
T Consensus       408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence            468899999998876320                                137899999999999999999999999775


Q ss_pred             Hc
Q psy16848        480 SL  481 (514)
Q Consensus       480 ~~  481 (514)
                      .-
T Consensus       488 ~~  489 (805)
T PLN02724        488 ST  489 (805)
T ss_pred             cC
Confidence            43

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.90  E-value=2.3e-21  Score=196.28  Aligned_cols=290  Identities=17%  Similarity=0.188  Sum_probs=202.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++++.+++++|.+++++++|||+|+..++.++. ..+||.|+++.+.|.++..++...|.+++.++.+. +.   
T Consensus        17 ~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~-~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~---   91 (352)
T cd00616          17 GPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALG-IGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP-DT---   91 (352)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCC-Cc---
Confidence            46788999999999999999999999999999988873 23999999999999999887777777666543210 00   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus        92 --------------------------------------------------------------------------------   91 (352)
T cd00616          92 --------------------------------------------------------------------------------   91 (352)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                            ...|.+.+++.+    +++++++++++   ++|...|+++|.++|+++|+++|+|++|
T Consensus        92 ----------------------~~~d~~~l~~~i----~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~  142 (352)
T cd00616          92 ----------------------YNIDPELIEAAI----TPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQ  142 (352)
T ss_pred             ----------------------CCcCHHHHHHhc----CcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCC
Confidence                                  001334444333    45678888764   6899999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEec-HHHHHHHHhhcCc-------------eEeccCC
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGT-KNFIDTIRSYAAG-------------FIFTTSL  361 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~-~~~~~~l~~~~~~-------------~~~~~~~  361 (514)
                      ++|.... +    ...+  ...|+.++|++  |+++. .||+++.+ +++.+.++.....             ..++..+
T Consensus       143 ~~g~~~~-~----~~~~--~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (352)
T cd00616         143 ALGATYK-G----RKVG--TFGDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRL  215 (352)
T ss_pred             CCCCeEC-C----EEcc--cCcceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCc
Confidence            9765411 1    0011  12466777876  99954 45777765 5777766543211             1122345


Q ss_pred             cHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC------CcEEEEEeCC--CccHHHHHHHHH
Q psy16848        362 PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP------SHIIPIKIGN--PALNTKICDMLL  432 (514)
Q Consensus       362 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~~~~~i~l~~--~~~~~~~~~~Ll  432 (514)
                      ++..++.+...++.     ++++.++.+++.+++.+.|.+. |+.+..+.      ..++.+.+++  .....++.+.|.
T Consensus       216 ~~~~aa~~~~~l~~-----~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~  290 (352)
T cd00616         216 SEIQAAIGLAQLEK-----LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALK  290 (352)
T ss_pred             CHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHH
Confidence            55555555554443     3457788889999999999986 77654322      2366677764  456889999994


Q ss_pred             HhCCeEEecccCCCCCC--------------------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        433 KEKGHYVQPINYPTVPV--------------------GEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       433 ~~~GI~v~~~~~~~~~~--------------------~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                       ++||.+.....+....                    ..+.+|++++..+|++|+++++++|+
T Consensus       291 -~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         291 -EAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             -HCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence             8999876443322111                    12689999999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.90  E-value=7.7e-22  Score=201.24  Aligned_cols=243  Identities=16%  Similarity=0.144  Sum_probs=172.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.+++++++||++|+..++.++.+  +||+|+++.+.|.++...+                    
T Consensus        60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~t~~~~--------------------  117 (390)
T PRK08133         60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQ--AGDHVVSSRSLFGSTVSLF--------------------  117 (390)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEccCcchhHHHHH--------------------
Confidence            466889999999999999999999999999988888866  9999999998887765221                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (390)
T PRK08133        118 --------------------------------------------------------------------------------  117 (390)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|+++++++..|.+.+++.+    ++++++|++++|+||+|.+.++++|.++|+++|+++|+|+++
T Consensus       118 --------~~~~~~~G~~v~~vd~~d~~~l~~~i----~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~  185 (390)
T PRK08133        118 --------EKIFARFGIETTFVDLTDLDAWRAAV----RPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCF  185 (390)
T ss_pred             --------HHHHHHcCcEEEEECCCCHHHHHHhc----CcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence                    11223345566666655555555554    356899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      +.+....         ....++|++++|+||++++.|    |++++++++++.+.......  +...++..+..+...++
T Consensus       186 ~~~~~~~---------pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~--g~~~~~~~a~~~l~gl~  254 (390)
T PRK08133        186 CTPALQQ---------PLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTA--GPTLSPFNAWVFLKGLE  254 (390)
T ss_pred             cccccCC---------chhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHh--CCCCCHHHHHHHHcccc
Confidence            7443211         113367999999999998754    78888888777665433332  33456665555444443


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHH
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDML  431 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~L  431 (514)
                           .+..+.++..++...+.+.|++. ++..+                  ...++++.|.+.+. .....|.+.|
T Consensus       255 -----tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l  326 (390)
T PRK08133        255 -----TLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDAT  326 (390)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhC
Confidence                 33446667777888888888876 32211                  11355888988532 2234555554

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.90  E-value=7.3e-22  Score=199.33  Aligned_cols=282  Identities=18%  Similarity=0.166  Sum_probs=198.4

Q ss_pred             CcchHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhccc------------cCCCceEEecCccchhhhhhhhc
Q psy16848         57 GNSLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTLGK------------MIPGLHYISDAGNHASMIQGIRN  120 (514)
Q Consensus        57 ~~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l~~------------~~~gd~v~~~~~~h~~~~~~~~~  120 (514)
                      +..++.+++.+++++++|.+    .++++++||+++..++.++..            .+++++|++++++|.+...+++.
T Consensus        35 ~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~  114 (345)
T cd06450          35 AATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAY  114 (345)
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHH
Confidence            44677778888888888875    578889999999988887642            11245899999999999888777


Q ss_pred             CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceee
Q psy16848        121 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE  200 (514)
Q Consensus       121 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~  200 (514)
                      .|.+++.++.++.                                                               +   
T Consensus       115 ~g~~~~~v~~~~~---------------------------------------------------------------~---  128 (345)
T cd06450         115 LDVKVRLVPVDED---------------------------------------------------------------G---  128 (345)
T ss_pred             HhcCeEEeeeCCC---------------------------------------------------------------C---
Confidence            7777665542100                                                               0   


Q ss_pred             ecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc--cCCCceEEEEecCCCCCccccCH
Q psy16848        201 RDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM--DVKIPKLVAFETVHSMTGAICPL  278 (514)
Q Consensus       201 ~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~l  278 (514)
                                                               ..|.+.+++.+.+.  ...+++++++++++|++|.+.++
T Consensus       129 -----------------------------------------~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~  167 (345)
T cd06450         129 -----------------------------------------RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPL  167 (345)
T ss_pred             -----------------------------------------CcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCH
Confidence                                                     01445555555431  12246788999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecHHHHHHHHhhcCce
Q psy16848        279 KELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTKNFIDTIRSYAAGF  355 (514)
Q Consensus       279 ~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~~~~~~l~~~~~~~  355 (514)
                      ++|.++|+++|+++++|++|+.+.... .....  ... ..+.|.+++|+||++++ .| |+++.+              
T Consensus       168 ~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~-~~~~d~~~~s~~K~l~~p~g~g~~~~~--------------  230 (345)
T cd06450         168 EEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DFG-IERVDSISVDPHKYGLVPLGCSAVLVR--------------  230 (345)
T ss_pred             HHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hcC-ccccCEEEEchhHhhCCCcchHHHHHH--------------
Confidence            999999999999999999999665311 11000  011 23679999999998754 34 655433              


Q ss_pred             EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc-CCCcEEEEEeCC----CccHHHHHH
Q psy16848        356 IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH-TPSHIIPIKIGN----PALNTKICD  429 (514)
Q Consensus       356 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~i~l~~----~~~~~~~~~  429 (514)
                                ..+..++++.+...++++++++..++.+++.+.|++. ++.+.. +..+++.+.++.    +....++.+
T Consensus       231 ----------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~  300 (345)
T cd06450         231 ----------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSD  300 (345)
T ss_pred             ----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHH
Confidence                      3334445555555677889999999999999999987 666543 456788887765    245678888


Q ss_pred             HHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC-CHHHHHHHHHHHHH
Q psy16848        430 MLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH-TREMIDKFVTDLLA  476 (514)
Q Consensus       430 ~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~-t~e~id~~~~~l~~  476 (514)
                      .|. ++|+.+.+...+   ..+.++|++++..+ |++|++++++.|++
T Consensus       301 ~L~-~~g~~~~~~~~~---~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         301 RLN-ERGGWHVPATTL---GGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             HHH-hcCCEEEEeeEE---CCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            885 776544433221   13568999999764 99999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>KOG0634|consensus

Probab=99.90  E-value=4.1e-21  Score=185.60  Aligned_cols=291  Identities=16%  Similarity=0.082  Sum_probs=212.7

Q ss_pred             EEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCC----ChHHHHHHHHhcccCCCcEEEe
Q psy16848         78 GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHN----DVNHLTQVLENMDVKIPKLVAF  153 (514)
Q Consensus        78 ~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~----d~~~l~~~l~~~~~~~~~~~~~  153 (514)
                      .+++++.|++...+++.++.  +||+|+++..+|.+.+++++..|..+++++.+    +++.|++.+.+-....-     
T Consensus       127 iiit~G~t~~l~~~l~~~~N--~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~-----  199 (472)
T KOG0634|consen  127 IIITNGNTDGLFKVLRTLIN--RGDHVLIEEYTYPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSY-----  199 (472)
T ss_pred             EEEecCCchHHHHHHHHhhc--CCCceEEecccchHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccc-----
Confidence            34444456788999999977  99999999999999999999999888887653    56777776665432200     


Q ss_pred             eccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhC
Q psy16848        154 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNS  233 (514)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~  233 (514)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (472)
T KOG0634|consen  200 --------------------------------------------------------------------------------  199 (472)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCEEEecCCChhHHHHHHhhccCCCc-eEEEEecCCCCCccccCH---HHHHHHHHHcCCEEEEeccccccccCC----
Q psy16848        234 SAPKIIYRHNDVNHLTQVLENMDVKIP-KLVAFETVHSMTGAICPL---KELCEVSHQHGALTFVDEVHAVGLYGE----  305 (514)
Q Consensus       234 g~~~~~v~~~d~~~l~~~l~~~~~~~~-~~vv~~~~~nptG~~~~l---~~l~~l~~~~gv~li~Dea~~~g~~g~----  305 (514)
                                            ..+++ .++.+++.+||||..+++   ++|.++|++|++++|+||.|.+..+..    
T Consensus       200 ----------------------k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~  257 (472)
T KOG0634|consen  200 ----------------------KKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPS  257 (472)
T ss_pred             ----------------------cCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCC
Confidence                                  01122 357789999999999994   899999999999999999999655431    


Q ss_pred             ---CC--CC---cc-----ccCCC-ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHH
Q psy16848        306 ---HG--AG---IG-----ERDGQ-LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAG  368 (514)
Q Consensus       306 ---~~--~~---~~-----~~~~~-~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a  368 (514)
                         ..  ..   +.     ..... -.+.+|-..||||.+++ |   ||+.+++-+++++-......  +.+.+...+..
T Consensus       258 ~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaP-GlRlG~it~~~~~l~ril~~ae~~--t~~pSg~sq~i  334 (472)
T KOG0634|consen  258 LELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAP-GLRLGWITGNSLFLKRILDLAEVA--TSGPSGFSQGI  334 (472)
T ss_pred             ccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcC-cceeEEeecCHHHHHHHhhhccee--ecCcccccHHH
Confidence               00  00   00     00111 13677999999999998 7   99999998888876655443  33466777777


Q ss_pred             HHHHHHHhhh----chHHHHHHHHHHHHHHHHHHHHhC---C-CccccCC-CcEEEEEeC-------CCcc-HHHHHHHH
Q psy16848        369 AREAIRILSS----QEGVELRAKHQDIVAYLRNELIQI---G-FPVEHTP-SHIIPIKIG-------NPAL-NTKICDML  431 (514)
Q Consensus       369 ~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~~~-~~~~~i~l~-------~~~~-~~~~~~~L  431 (514)
                      ..+.|+.+.+    .++.+++..+..++..+..+|.+.   . ..+.++. |.|+|++++       +..+ ..++...+
T Consensus       335 v~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~  414 (472)
T KOG0634|consen  335 VYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIK  414 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHH
Confidence            7777777665    456788888889999999999886   3 4455554 447788886       3222 45555555


Q ss_pred             HHhCCeEEecccCCCCCCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        432 LKEKGHYVQPINYPTVPVG----EEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       432 l~~~GI~v~~~~~~~~~~~----~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.++||.+.+|.++.....    +-++|++++ ....|++++.++++..++++.
T Consensus       415 ~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a-~a~~e~l~~g~~rf~~~ike~  467 (472)
T KOG0634|consen  415 AVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA-FAEPEKLDEGIERFGSVIKEH  467 (472)
T ss_pred             HHHCCeEEecCceeEEcCccCCCcceEEEEee-cCCHHHHHHHHHHHHHHHHHH
Confidence            5799999999986554322    239999998 466889999999999988764

>PRK05968 hypothetical protein; Provisional

Probab=99.90  E-value=1.3e-21  Score=199.51  Aligned_cols=287  Identities=18%  Similarity=0.148  Sum_probs=203.4

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..+++++++++++|.+++++++||+.|+..++.++.+  +||+|+++.+.|.++...+.                  
T Consensus        61 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~y~~t~~~~~------------------  120 (389)
T PRK05968         61 DNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVE--PGDRIVAVRHVYPDAFRLFE------------------  120 (389)
T ss_pred             CChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHH------------------
Confidence            3466899999999999999999999999999888887765  99999999998887652211                  


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (389)
T PRK05968        121 --------------------------------------------------------------------------------  120 (389)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                ..+...|.++++++..|.+.+++.+     +++++|++++|.|+++...++++|.++|+++|+++|+|++
T Consensus       121 ----------~~~~~~G~~v~~vd~~d~~~l~~~i-----~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a  185 (389)
T PRK05968        121 ----------TILKRMGVEVDYVDGRDEEAVAKAL-----PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS  185 (389)
T ss_pred             ----------HHHHHcCceEEEeCCCCHHHHHHhc-----ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence                      1122345556666655555555554     2478999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      |+.+....         ....+.|+++.|++|.+++.    ||+++.++++++.++.....+ .+..+++..++.+...|
T Consensus       186 ~a~~~~~~---------p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~-~g~~~~~~~A~~~l~~L  255 (389)
T PRK05968        186 WASPVFQR---------PITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPY-LGAKLSPFEAWLLLRGL  255 (389)
T ss_pred             CcchhccC---------chhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHh-CCCCCChHHHHHHHccc
Confidence            98554211         11236799999999999763    488888988888777543221 13356777777766666


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc-C------------CCcEEEEEeCCCccHHHHHHHHHHhCCeEE
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH-T------------PSHIIPIKIGNPALNTKICDMLLKEKGHYV  439 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~------------~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v  439 (514)
                      +.+     ....++..++.+++.+.|++. ++..+. +            .++++.+.+.+.....+|++.| +..++.+
T Consensus       256 ~tl-----~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L-~~~~~~~  329 (389)
T PRK05968        256 RTL-----PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADAL-KLFRLGV  329 (389)
T ss_pred             CcH-----HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhC-CccEEec
Confidence            533     446677777788889999887 443221 1            2458888887555677888888 4777666


Q ss_pred             ecccCCC------------C-C-------CCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        440 QPINYPT------------V-P-------VGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       440 ~~~~~~~------------~-~-------~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      +-|..+.            . .       ..++.+|+|++...+++-++.+-++|+
T Consensus       330 s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~  385 (389)
T PRK05968        330 SWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALA  385 (389)
T ss_pred             CCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence            6444333            0 0       125799999997665544444444444

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.89  E-value=1.7e-21  Score=198.72  Aligned_cols=288  Identities=19%  Similarity=0.188  Sum_probs=196.1

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +..+++++++++++|.+++++++||+.|+..++.++.+  +||+|+++.+.|......+.                    
T Consensus        59 p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~--~Gd~Vi~~~~~y~~t~~~~~--------------------  116 (391)
T TIGR01328        59 PTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILK--AGDHLISDECLYGCTFALLE--------------------  116 (391)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCcchHHHHHHH--------------------
Confidence            56789999999999999999999999999888888865  99999999988876542211                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (391)
T TIGR01328       117 --------------------------------------------------------------------------------  116 (391)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                              ..+...|+++++++..|.+.+++.+    ++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+
T Consensus       117 --------~~~~~~G~~~~~vd~~d~e~l~~~i----~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a  184 (391)
T TIGR01328       117 --------HALTKFGIQVDFINMAIPEEVKAHI----KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA  184 (391)
T ss_pred             --------HHHhcCCeEEEEECCCCHHHHHHhh----ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence                    1122345566666655555555554    3468999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI  375 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~  375 (514)
                      .+..+.+         ...+.|++++|++|.+++.    ||++++++++++.++.......++..+++..++.+...|+.
T Consensus       185 ~~~~~~~---------~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t  255 (391)
T TIGR01328       185 TPMLTNP---------VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT  255 (391)
T ss_pred             hhccCCc---------hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc
Confidence            6543211         1336899999999999864    38888899988887753322212345677777666665543


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHHHHhC
Q psy16848        376 LSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDMLLKEK  435 (514)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~  435 (514)
                      +     ..++++..++.+++.+.|++. ++..+                  ...++++.|.+... ....+|.+.| +--
T Consensus       256 l-----~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l-~~~  329 (391)
T TIGR01328       256 L-----NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNL-KLI  329 (391)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhC-Ccc
Confidence            3     346777788888888888876 22210                  11355888988632 2234455544 211


Q ss_pred             CeEEecccC------CCC------C--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        436 GHYVQPINY------PTV------P--------VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       436 GI~v~~~~~------~~~------~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      .+..+-|..      |..      +        ..++.+|+|+++    ||.+.+++-|++.++.
T Consensus       330 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  390 (391)
T TIGR01328       330 RLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALDA  390 (391)
T ss_pred             eEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHhh
Confidence            122211111      000      0        124689999995    4466666666666553

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.89  E-value=3.9e-21  Score=194.93  Aligned_cols=312  Identities=15%  Similarity=0.173  Sum_probs=205.5

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      ++-.+++.+.+.. +.       .++..+..+++++++++++|.+++++++|||+|+..++.++. .+|||+|+++.++|
T Consensus        11 ~~e~~a~~~~~~~-~~-------~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~-~~pGd~Viv~~~t~   81 (376)
T TIGR02379        11 GQELEYIAEAISE-GK-------LSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLD-IQPGDEVIMPSYTF   81 (376)
T ss_pred             HHHHHHHHHHHHc-CC-------ccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCc
Confidence            3446677776664 11       123357789999999999999999999999999887777762 34999999999999


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      .++..++...|++++.++.+                                                            
T Consensus        82 ~~~~~~~~~~G~~~v~vd~d------------------------------------------------------------  101 (376)
T TIGR02379        82 VSTANAFVLRGAKIVFVDIR------------------------------------------------------------  101 (376)
T ss_pred             HHHHHHHHHcCCEEEEEecC------------------------------------------------------------
Confidence            99887776666665544321                                                            


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  271 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np  271 (514)
                                                                        .+++..+.+.+++..++++++|+   ++|+
T Consensus       102 --------------------------------------------------~~~~~~d~~~le~~i~~~tk~Ii---p~~~  128 (376)
T TIGR02379       102 --------------------------------------------------PDTMNIDETLIESAITHRTKAIV---PVHY  128 (376)
T ss_pred             --------------------------------------------------CCcCCCCHHHHHHhcCcCceEEE---EeCC
Confidence                                                              11122222334444455788886   4567


Q ss_pred             CccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC--CCeEEEec-HHHHH
Q psy16848        272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN--IGGYIVGT-KNFID  346 (514)
Q Consensus       272 tG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~--~GG~l~~~-~~~~~  346 (514)
                      +|...++++|.++|++||+++|+|++|++|.. ..+...    +  .-.|+.++||+  |.+.+  .||+++.+ +++.+
T Consensus       129 ~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~-~~~~~~----g--~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~  201 (376)
T TIGR02379       129 AGVACDMDTIMALANKHQLFVIEDAAQGVMST-YKGRAL----G--SIGHLGTFSFHETKNYTSGGEGGALLINDQAFIE  201 (376)
T ss_pred             CCCccCHHHHHHHHHHCCCEEEEECccccCCc-cCCccc----C--CCCCEEEEeCCCCCcCcccCCceEEEECCHHHHH
Confidence            89999999999999999999999999997652 111111    1  11266666775  54533  56877665 77888


Q ss_pred             HHHhhcCc-------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC---C-
Q psy16848        347 TIRSYAAG-------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI---G-  403 (514)
Q Consensus       347 ~l~~~~~~-------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-  403 (514)
                      +++..+..                   .+++..++.+.++.+...|+.++     +..++.++.+++..+.|.++   + 
T Consensus       202 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~-----~~~~~r~~~~~~y~~~L~~~~~~~~  276 (376)
T TIGR02379       202 RAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQAD-----RINQDRLATWQLYQDALKPLEEKGI  276 (376)
T ss_pred             HHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHhccCCcCCe
Confidence            77654321                   22344567777777777777653     34555555555566666543   1 


Q ss_pred             Ccc--ccCCC----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC--C--------C---------CCcEEEEEe
Q psy16848        404 FPV--EHTPS----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV--P--------V---------GEEKIRLAP  458 (514)
Q Consensus       404 ~~~--~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~--------~---------~~~~iRl~~  458 (514)
                      +..  ..+..    .++.+.++...+.+++.+.| +++||.++....+..  +        .         ..+.+.+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~i~~~~~~~r~~l~~~L-~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~  355 (376)
T TIGR02379       277 IELPSIPNGCQHNAHMFYIKLKDEDDRNELIKYL-KEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPL  355 (376)
T ss_pred             eeCCCCCCCCeeeeEEEEEEECCcCCHHHHHHHH-HHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccC
Confidence            111  11111    24556666544678999999 599999873321110  0        0         135788888


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy16848        459 TPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l  478 (514)
                      +..++++|++++++.+++++
T Consensus       356 ~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       356 YYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            88999999999999998864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.89  E-value=1.2e-21  Score=199.73  Aligned_cols=285  Identities=17%  Similarity=0.097  Sum_probs=197.9

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +...++++.+++++|.+++++++||+.|+..++.++.+  +||+|+++.+.|......++...                 
T Consensus        61 pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~--~Gd~Vv~~~~~y~~~~~~~~~~~-----------------  121 (386)
T PRK06767         61 PTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLK--AGDHIICSNGLYGCTYGFLEVLE-----------------  121 (386)
T ss_pred             cchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHHH-----------------
Confidence            45789999999999999999999999998888888866  99999999998877664332211                 


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (386)
T PRK06767        122 --------------------------------------------------------------------------------  121 (386)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                                 ...|.++..++..|.+.+++.+    .+++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+
T Consensus       122 -----------~~~gi~~~~~~~~d~~~l~~~i----~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a  186 (386)
T PRK06767        122 -----------EKFMITHSFCDMETEADIENKI----RPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFC  186 (386)
T ss_pred             -----------hhcCeEEEEeCCCCHHHHHHhh----CcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCc
Confidence                       0112223333333455555444    3468999999999999999999999999999999999999997


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhh-cCceEeccCCcHHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSY-AAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      .+..+.      +   ...+.|+++.|++|.+++.    ||++++++++++.+... ...+  +..+++..++++...|+
T Consensus       187 ~~~~~~------p---l~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~--g~~~~~~~a~l~~~~L~  255 (386)
T PRK06767        187 SPYLQR------P---LELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDI--GGIMAPFDAWLLLRGLK  255 (386)
T ss_pred             ccccCC------c---hhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHh--CCCCCHHHHHHHHcCCC
Confidence            543321      1   1236799999999999764    48999998877665332 2222  23456666655555444


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc------------CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEe
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH------------TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQ  440 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~------------~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~  440 (514)
                      .     +..++++.+++..++.+.|++. ++..+.            ..++++.|.+.. .....+|.+.| +..++.++
T Consensus       256 t-----l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l-~~~~~~~s  329 (386)
T PRK06767        256 T-----LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDL-HFITIAVS  329 (386)
T ss_pred             c-----HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhC-CccEEecC
Confidence            2     3346788899999999999987 554221            245688888863 23566888888 57777766


Q ss_pred             cccCCCC---C-----------------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        441 PINYPTV---P-----------------VGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       441 ~~~~~~~---~-----------------~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      -|.....   +                 ..++.+|+|++..    +.+.+++-|.+.+.
T Consensus       330 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~  384 (386)
T PRK06767        330 LGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLE----SWEDIVSDLEQALK  384 (386)
T ss_pred             CCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHh
Confidence            3321110   0                 1246899999954    45555555555554

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.89  E-value=3.2e-21  Score=196.72  Aligned_cols=214  Identities=19%  Similarity=0.202  Sum_probs=162.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..++++++++++.|.+.+++++||++|+..++.++.+  +||+|+++.+.|.++...++                   
T Consensus        63 ~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~--~GD~Vi~~~~~y~~~~~~~~-------------------  121 (398)
T PRK08249         63 NPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLK--PGDRVVSIKDTYGGTNKIFT-------------------  121 (398)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHH-------------------
Confidence            577899999999999999999999999999888888866  99999999999987653221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (398)
T PRK08249        122 --------------------------------------------------------------------------------  121 (398)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|+++++++..|.+.+++.+    ++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|
T Consensus       122 ---------~~~~~~Gi~v~~vd~~d~e~l~~~i----~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~  188 (398)
T PRK08249        122 ---------EFLPRMGVDVTLCETGDHEQIEAEI----AKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTF  188 (398)
T ss_pred             ---------HHHhhCCeEEEEcCCCCHHHHHHhc----CCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCc
Confidence                     0112234444445444555555444    346899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      +.+....         ....+.|++++|++|++++.    ||++++++++++.+.......  +..+++..++.+...++
T Consensus       189 a~~~~~~---------~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~--g~~~s~~~a~l~l~~l~  257 (398)
T PRK08249        189 ATPINQN---------PLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREIN--GATMDPMSAYLILRGMK  257 (398)
T ss_pred             CccccCC---------chhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHhCcc
Confidence            8543211         11236889999999999863    388888888888887655433  44677887777777766


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      .+     ....++..+++..+.+.|++.
T Consensus       258 tL-----~~R~~~~~~na~~la~~L~~~  280 (398)
T PRK08249        258 TL-----KLRVRQQQESAMALAKYLQTH  280 (398)
T ss_pred             hH-----HHHHHHHHHHHHHHHHHHHcC
Confidence            54     235677778888888888875

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.89  E-value=3.1e-20  Score=183.05  Aligned_cols=300  Identities=20%  Similarity=0.239  Sum_probs=232.1

Q ss_pred             chHHHHHHHHHHhHcCCC--cEE-EEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848         59 SLFHEKLEEDVAKLHQKE--AGL-VFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNH  135 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~--~~i-~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~  135 (514)
                      ...+.++.+.+...++.+  .++ +..|||.+.++++..+..  |||+|++-.+.-.+-                     
T Consensus        37 ~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~--pgdkVLv~~nG~FG~---------------------   93 (383)
T COG0075          37 VGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE--PGDKVLVVVNGKFGE---------------------   93 (383)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCChHHH---------------------
Confidence            367778888899999876  444 447899999999999977  999988754433221                     


Q ss_pred             HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848        136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  215 (514)
Q Consensus       136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l  215 (514)
                                                                                                      
T Consensus        94 --------------------------------------------------------------------------------   93 (383)
T COG0075          94 --------------------------------------------------------------------------------   93 (383)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCceeeecchHHHHhhCCCCEEEec-----CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCC
Q psy16848        216 VNPEVAIHASMIQGIRNSSAPKIIYR-----HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  290 (514)
Q Consensus       216 ~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv  290 (514)
                               .+...+.++|+++..+.     .-+.+++++.|++  .+..+++.+.|.-++||...|+++|.++|++||+
T Consensus        94 ---------R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~--~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~  162 (383)
T COG0075          94 ---------RFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDK--DPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGA  162 (383)
T ss_pred             ---------HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc--CCCccEEEEEeccCcccccCcHHHHHHHHHHcCC
Confidence                     11223334444444444     2367788888874  3457899999999999999999999999999999


Q ss_pred             EEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHHHHHHHHhhcCc-eE-----------
Q psy16848        291 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFIDTIRSYAAG-FI-----------  356 (514)
Q Consensus       291 ~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~~l~~~~~~-~~-----------  356 (514)
                      ++|+|.+-++|..        +...-.++.|+++.+..|.++ ++| |++..+++..+.+...... +.           
T Consensus       163 l~iVDaVsS~Gg~--------~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~  234 (383)
T COG0075         163 LLIVDAVSSLGGE--------PLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYME  234 (383)
T ss_pred             EEEEEecccCCCc--------ccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHh
Confidence            9999999998764        222225689999999999995 478 9999999888888755433 11           


Q ss_pred             ----eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC---Cc-EEEEEeCCCccHHHHH
Q psy16848        357 ----FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP---SH-IIPIKIGNPALNTKIC  428 (514)
Q Consensus       357 ----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~-~~~i~l~~~~~~~~~~  428 (514)
                          +-++.+.....++..+|+.+.+++++++.++++.+.+++++.++++|++.....   ++ +..+..|.+.+..++.
T Consensus       235 ~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~~~~~  314 (383)
T COG0075         235 KKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDDKKVR  314 (383)
T ss_pred             hcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCcHHHH
Confidence                223567778899999999999999999999999999999999999999876532   33 5557788776655566


Q ss_pred             HHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        429 DMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       429 ~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      ..++++.|+.+.++..+   .....+||......+.+++...+.+|..++++++.
T Consensus       315 ~~~~~~~g~~i~gg~~~---l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~  366 (383)
T COG0075         315 RALLKEYGVEIAGGQGP---LKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV  366 (383)
T ss_pred             HHHHHhCCEEecccccc---cCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence            67766779999887753   33569999998889999999999999999999875

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.89  E-value=2.1e-21  Score=196.81  Aligned_cols=287  Identities=14%  Similarity=0.156  Sum_probs=193.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+++++++++.|.+.+++++||++|+..++ ++..  +||+|+++.+.|.+....+.                   
T Consensus        51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~--~Gd~Vl~~~~~y~~t~~~~~-------------------  108 (366)
T PRK08247         51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFR--SGDELIVSSDLYGGTYRLFE-------------------  108 (366)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhC--CCCEEEEecCCcCcHHHHHH-------------------
Confidence            4568999999999999999999999999887665 4554  99999999988877542211                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       109 --------------------------------------------------------------------------------  108 (366)
T PRK08247        109 --------------------------------------------------------------------------------  108 (366)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|+++..++..|.+.+++.+.    +++++|++++|+||+|...++++|.++|+++|+++|+|++|
T Consensus       109 ---------~~~~~~G~~v~~vd~~d~~~l~~~i~----~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~  175 (366)
T PRK08247        109 ---------EHWKKWNVRFVYVNTASLKAIEQAIT----PNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF  175 (366)
T ss_pred             ---------HHhhccCceEEEECCCCHHHHHHhcc----cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence                     11223455566666556655555553    45899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+....      +   ...+.|++++|++|.+++.    ||+++++ +++.+.+...+...  +...++..+..+...+
T Consensus       176 ~~~~~~~------p---~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~--g~~~s~~~a~l~~~~l  244 (366)
T PRK08247        176 YTPVLQR------P---LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAA--GAVLSPFDSWLLIRGM  244 (366)
T ss_pred             ccccccC------c---hhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhc--CCCCChHHHHHHHhcc
Confidence            6433211      1   1236899999999999863    4888876 67777776544333  3355666666666655


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc--ccCCCcEEEEEeCCCccHHHHHHHHH---------HhCCeEEec
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV--EHTPSHIIPIKIGNPALNTKICDMLL---------KEKGHYVQP  441 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~~~~~~~i~l~~~~~~~~~~~~Ll---------~~~GI~v~~  441 (514)
                      +.     +...+++.+++++.+.+.|++. ++..  .++.++++.+.+........+.+.+-         ..+.+.+.|
T Consensus       245 ~t-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p  319 (366)
T PRK08247        245 KT-----LALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYP  319 (366)
T ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECC
Confidence            42     3345667799999999999987 6553  23367888888754222223333321         122334444


Q ss_pred             ccCCCC----------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        442 INYPTV----------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       442 ~~~~~~----------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +.....          ...++.+|++++.    |+++.+++-|++.+++
T Consensus       320 ~~~~~~~~~~~~r~~~gi~~~~~R~svGl----E~~~dl~~dl~~al~~  364 (366)
T PRK08247        320 ATQTHADIPEEIRIANGVCNRLLRFSVGI----ENVEDLIADLKQAFKQ  364 (366)
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            432111          0125689999995    4455556666655543

>PRK06460 hypothetical protein; Provisional

Probab=99.89  E-value=5.1e-21  Score=194.24  Aligned_cols=244  Identities=16%  Similarity=0.131  Sum_probs=168.1

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..++++++++++.|.+.+++++||++|+..++.++.+  +||+|+++.+.|.....                     
T Consensus        43 ~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~--~Gd~Vl~~~~~~~~ty~---------------------   99 (376)
T PRK06460         43 ANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLK--PGNSVLVHRDMFGRSYR---------------------   99 (376)
T ss_pred             CCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcCcHHH---------------------
Confidence            3567899999999999998899999999998888888866  99999997655433221                     


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (376)
T PRK06460        100 --------------------------------------------------------------------------------   99 (376)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                             .+...+...|.++..++.++.+.+    ++...+++++|++++|+||+|.++|+++|.++|+++|+++|+|++
T Consensus       100 -------~~~~~~~~~G~~v~~~~~~~~~~l----~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea  168 (376)
T PRK06460        100 -------FFTDYLKNWGVNVDASNPGSDNII----EKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDAT  168 (376)
T ss_pred             -------HHHHHHHhhCcEEEEECCCCHHHH----HHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence                   011122233444444443332222    222345689999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      |..+..      .   .....++|+++.|+||++++.    +|++++++++++.+......+  +.+.++..+..+...+
T Consensus       169 ~~~~~~------~---~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~--g~~~~~~~a~~~l~~~  237 (376)
T PRK06460        169 FSTPIN------Q---KPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTL--GTSLDPHAAYLTLRGI  237 (376)
T ss_pred             cCcccc------C---ChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhc--CCCCCHHHHHHHHhch
Confidence            974321      1   111235799999999999753    489999999998887665554  4445554444333333


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc--c----------------cCCCcEEEEEeCCC-ccHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV--E----------------HTPSHIIPIKIGNP-ALNTKICDML  431 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~----------------~~~~~~~~i~l~~~-~~~~~~~~~L  431 (514)
                      +     .++..++++.++++++.+.|++. .+..  .                ...|+++.+.+... .....+++.|
T Consensus       238 ~-----~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l  310 (376)
T PRK06460        238 K-----TLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSL  310 (376)
T ss_pred             h-----hHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhC
Confidence            3     34567888889999999999876 2210  0                12356889988642 2344455544

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.89  E-value=4.1e-21  Score=194.43  Aligned_cols=285  Identities=16%  Similarity=0.101  Sum_probs=195.0

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +....+|++++++.|.+++++++||+.|+..++.++.+  +||+|+++++.|......+.                    
T Consensus        50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~--~GD~Vl~~~~~y~~t~~~~~--------------------  107 (377)
T TIGR01324        50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVK--AGDHVLMVDSAYEPTRYFCD--------------------  107 (377)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHH--------------------
Confidence            56789999999999999999999999999999988866  99999998888876542110                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (377)
T TIGR01324       108 --------------------------------------------------------------------------------  107 (377)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                              ..+...|.++..++..+.    +.+++..++++++|++++|+||+|...++++|.++|+++|+++|+|++|+
T Consensus       108 --------~~~~~~gi~v~~~d~~~~----e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a  175 (377)
T TIGR01324       108 --------IVLKRMGVDITYYDPLIG----EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWA  175 (377)
T ss_pred             --------HHHHhcCcEEEEECCCCH----HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence                    001122334444433222    23444445679999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI  375 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~  375 (514)
                      .|...+         ....++|++++|++|++++.    ||+++++++..+.+......  ++...++..+......++.
T Consensus       176 ~g~~~~---------pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~--~G~~l~p~~a~~~~rgl~t  244 (377)
T TIGR01324       176 AGLLFK---------PLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYL--MGQMVDADDAYTTLRGLRT  244 (377)
T ss_pred             cccccC---------ccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHH--hCCCCCHHHHHHHHhhhhh
Confidence            766421         12458899999999999763    38888888877766643322  2556777777666666653


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-c-----------------ccCCCcEEEEEeCC--CccHHHHHHHHHHh
Q psy16848        376 LSSQEGVELRAKHQDIVAYLRNELIQI-GFP-V-----------------EHTPSHIIPIKIGN--PALNTKICDMLLKE  434 (514)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-----------------~~~~~~~~~i~l~~--~~~~~~~~~~Ll~~  434 (514)
                      +     ..++++..++...+.+.|++. .+. +                 ....++++.+.+.+  .....+|.+.| +-
T Consensus       245 l-----~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l-~~  318 (377)
T TIGR01324       245 L-----GVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHL-QL  318 (377)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhC-Cc
Confidence            3     336777778878888888875 221 0                 01235688898863  23356777777 45


Q ss_pred             CCeEEecccCCCC----------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        435 KGHYVQPINYPTV----------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       435 ~GI~v~~~~~~~~----------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .++.++-|.....                ...++.+|++++..    +.+.+++-|.+.++
T Consensus       319 ~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGlE----~~~dl~~dl~~al~  375 (377)
T TIGR01324       319 FGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGLE----NVDDLKADLKAGFE  375 (377)
T ss_pred             ceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCCC----CHHHHHHHHHHHHh
Confidence            5555442221110                01235899999954    44555555555443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>KOG1403|consensus

Probab=99.89  E-value=7.5e-22  Score=181.41  Aligned_cols=369  Identities=16%  Similarity=0.161  Sum_probs=249.1

Q ss_pred             chhhhhcCCceeeecccCCCCC-----------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc
Q psy16848          9 NFKQVHKSNRVTCRLSSVQYKV-----------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA   77 (514)
Q Consensus         9 ~~~~~~~~g~~~~d~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~   77 (514)
                      +++..+.+++.+.|-.++.|++           ||+++++...++....++   .++..  .++.+-.+...+.+-+..-
T Consensus        30 P~kivRaq~QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN---~RFlh--d~lv~cA~~l~stlPeLsv  104 (452)
T KOG1403|consen   30 PLKIVRAQGQYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTN---NRFLH--DELVQCARTLTSTLPELSV  104 (452)
T ss_pred             chhhehhccceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhccc---chhhH--HHHHHHHHHHhhcCCCceE
Confidence            3556666778888888888872           799999999999985443   23322  2333333334444446666


Q ss_pred             EEEEeccccccccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecc
Q psy16848         78 GLVFTSCYVANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV  156 (514)
Q Consensus        78 ~i~~~sGt~a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~  156 (514)
                      ++|++||++||.++|+.... ++..|.|.++..+|..+..-+...   +..|.+.           ....+|.++-.   
T Consensus       105 c~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~S---PYKF~~g-----------~~v~kpd~VHV---  167 (452)
T KOG1403|consen  105 CFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVS---PYKFNQG-----------GGVAKPDYVHV---  167 (452)
T ss_pred             EEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeecc---ceeccCC-----------CCcCCCceeEe---
Confidence            89999999999999976543 567888999888887765333221   1112110           00112222110   


Q ss_pred             ccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCC
Q psy16848        157 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAP  236 (514)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~  236 (514)
                                                                                     .++|+-|....+     
T Consensus       168 ---------------------------------------------------------------APcPDvyrGK~r-----  179 (452)
T KOG1403|consen  168 ---------------------------------------------------------------APCPDVYRGKFR-----  179 (452)
T ss_pred             ---------------------------------------------------------------cCCccccccccc-----
Confidence                                                                           111222211111     


Q ss_pred             EEEecCCC-----hhHHHHHHhhcc--CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccC
Q psy16848        237 KIIYRHND-----VNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYG  304 (514)
Q Consensus       237 ~~~v~~~d-----~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g  304 (514)
                      ...++..+     -+..++++.+..  ..+.++++.++.++-.|.++|    ++++.+..+.+|-+.|.||++. +|+.|
T Consensus       180 ~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG  259 (452)
T KOG1403|consen  180 DKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVG  259 (452)
T ss_pred             cccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccc
Confidence            11111111     234445554432  334678889999999999998    7999999999999999999999 88888


Q ss_pred             CCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchH
Q psy16848        305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEG  381 (514)
Q Consensus       305 ~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  381 (514)
                      ++.+.+. .++.  -+||+  +++|.+|. |   +.++..+++.+.+....-.+..+++.+|.+++++++.++...++. 
T Consensus       260 ~hyWafq-~y~f--iPDIV--tmgKpmGN-GhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~-  332 (452)
T KOG1403|consen  260 SHYWAFQ-TYNF--IPDIV--TMGKPMGN-GHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDEN-  332 (452)
T ss_pred             hhhhhhh-hhcc--ccchh--eecccCCC-CCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhh-
Confidence            8775554 3333  68999  99999998 6   889999999998876444444466899999999999999886655 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC--CCcccc---CCCcEEEEEeC--------CCccHHHHHHHHHHhCCeEEecccCCCCC
Q psy16848        382 VELRAKHQDIVAYLRNELIQI--GFPVEH---TPSHIIPIKIG--------NPALNTKICDMLLKEKGHYVQPINYPTVP  448 (514)
Q Consensus       382 ~~~~~~~~~~~~~l~~~L~~~--g~~~~~---~~~~~~~i~l~--------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~  448 (514)
                        +.++.++..++|...|+++  ..+.++   .-|.|+.+.+-        +...+..+..+|.+.++|+++     ...
T Consensus       333 --Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLls-----aDG  405 (452)
T KOG1403|consen  333 --LQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLS-----ADG  405 (452)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEe-----cCC
Confidence              7777888888888888776  334433   23446666552        234455677788666779986     233


Q ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        449 VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       449 ~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ..++.+.+-++...+++++++++..|++++..+
T Consensus       406 Ph~NilKiKPPmCFneena~e~v~~ld~iLT~m  438 (452)
T KOG1403|consen  406 PHRNILKIKPPMCFNEENADEFVLGLDEILTVM  438 (452)
T ss_pred             CCCceeecCCCcccChhhHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999988644

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.89  E-value=4.3e-22  Score=199.29  Aligned_cols=296  Identities=21%  Similarity=0.239  Sum_probs=198.9

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a   87 (514)
                      .+|+.++||.+   +.-++  ||++.+++.+++.+......    .....+...++.+++.+.+  +.++++|++||++|
T Consensus        13 ~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~----~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseA   88 (339)
T PF00202_consen   13 VDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSF----SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEA   88 (339)
T ss_dssp             TTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCST----TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHH
T ss_pred             CCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccc----cceeccchhhhhhhhhhccccccceeeeccCchHH
Confidence            47888999953   33443  79999999999998544321    1123577889999999999  56778999999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ++.|++....                                        ..-.+..+++++++.|+|.||-..      
T Consensus        89 ve~Alkla~~----------------------------------------~~~~~~~~~r~~il~~~~~yHG~t------  122 (339)
T PF00202_consen   89 VEAALKLARQ----------------------------------------YHNKRAYTGRRKILAFEGSYHGRT------  122 (339)
T ss_dssp             HHHHHHHHHH----------------------------------------HHHHTHHHTTTEEEEETTTB-TSS------
T ss_pred             HHHHHHHhhc----------------------------------------ccccccccCCceEEEeeeeeeccC------
Confidence            9999965431                                        001123456778888888886211      


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                          .|.....+.                           ..+..........+..+|..+...
T Consensus       123 --------------------~~~~s~~~~---------------------------~~~~~~~~~~~~~~~~~p~~~~~~  155 (339)
T PF00202_consen  123 --------------------LGALSLTGN---------------------------PPYRKGFGPLYPGVVFVPFPDPAA  155 (339)
T ss_dssp             --------------------HHHHHHSSS---------------------------THHHTTTCSSSTTEEEEETTCHHH
T ss_pred             --------------------cccccccCC---------------------------ccccccccccccccccccCCccch
Confidence                                000000000                           011111112222345566555444


Q ss_pred             ----------HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccc
Q psy16848        248 ----------LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGE  312 (514)
Q Consensus       248 ----------l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~  312 (514)
                                +++.+.+...++++++++++++...|...+    +++|+++|++||+++|+||+++ +|+.|+.+  ..+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~--a~~  233 (339)
T PF00202_consen  156 DEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF--ASE  233 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS--GHH
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcc--cee
Confidence                      555555555677899999999999887765    8999999999999999999999 66766533  233


Q ss_pred             cCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy16848        313 RDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ  389 (514)
Q Consensus       313 ~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  389 (514)
                      .+++  .||++  +++|++++ |   |.+++++++.+.+.......  +...+++.++++.++|+.+.+++   +.++.+
T Consensus       234 ~~gv--~PDiv--~~gK~l~g-G~p~sav~~~~~i~~~~~~~~~~~--T~~g~p~~~aaa~~~l~~~~~~~---~~~~~~  303 (339)
T PF00202_consen  234 HYGV--DPDIV--TFGKGLGG-GLPISAVLGSEEIMEAFQPGSHGS--TFGGNPLSCAAALATLEILEEED---LLERVR  303 (339)
T ss_dssp             HHTS--SSSEE--EEEGGGGT-TSSEEEEEEEHHHHTTSCTTSSTC--TTTT-HHHHHHHHHHHHHHHHTT---HHHHHH
T ss_pred             cccc--cCccc--ccccchhh-hhhcccccccchhhcccccccccc--ccccchHhhhhhhhHHHhhccHH---HHHHHH
Confidence            4554  89999  78899987 5   88899999888775544333  55789999999999999997766   667777


Q ss_pred             HHHHHHHHHHHhC--CCcc---ccCCCcEEEEEeC
Q psy16848        390 DIVAYLRNELIQI--GFPV---EHTPSHIIPIKIG  419 (514)
Q Consensus       390 ~~~~~l~~~L~~~--g~~~---~~~~~~~~~i~l~  419 (514)
                      ++.+++.+.|+++  ..+.   +...|.++.+++.
T Consensus       304 ~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  304 ELGERLREGLRELAARYPLIGEVRGIGLMIGIELV  338 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEEEEEEETTEEEEEES
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEeeeCeEEEEEEE
Confidence            8888888777765  1122   2345667777653

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.89  E-value=5.1e-21  Score=194.81  Aligned_cols=243  Identities=19%  Similarity=0.188  Sum_probs=175.2

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++++++++++|.+++++++||+.|+..++.++.+  +||+|+++...|.+....+                    
T Consensus        53 ~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~~~~t~~~~--------------------  110 (380)
T TIGR01325        53 NPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQ--AGDHVVASRSLFGSTVGFI--------------------  110 (380)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCCcchHHHHH--------------------
Confidence            356789999999999999999999999999999988866  9999999888776654211                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (380)
T TIGR01325       111 --------------------------------------------------------------------------------  110 (380)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|.++..++.+|.+.+++.+    .+++++|++++|+||+|.+.++++|.++|+++|+++|+|++|
T Consensus       111 --------~~~~~~~g~~v~~v~~~d~~~l~~~i----~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~  178 (380)
T TIGR01325       111 --------SEILPRFGIEVSFVDPTDLNAWEAAV----KPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVF  178 (380)
T ss_pred             --------HHHHHHhCCEEEEECCCCHHHHHHhc----CCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence                    11223345566666665665555544    346899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      +.+...         .....++|+++.|++|++++.|    |++++++++++.++......  +...++..+..+...++
T Consensus       179 ~~~~~~---------~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~--g~~~~p~~a~~~l~~l~  247 (380)
T TIGR01325       179 ATPVLQ---------QPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHT--GPAMSPFNAWVLLKGLE  247 (380)
T ss_pred             cccccC---------CchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhh--CCCCCHHHHHHHHhccC
Confidence            844321         1113368999999999998644    88888888888777654333  34556666665555554


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc-----cc-------------CCCcEEEEEeCCCccHHHHHHHH
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV-----EH-------------TPSHIIPIKIGNPALNTKICDML  431 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-----~~-------------~~~~~~~i~l~~~~~~~~~~~~L  431 (514)
                      .+     ....++..+++..+.+.|++. ++..     ..             ..++++.+.+.+......|.+.|
T Consensus       248 tl-----~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l  318 (380)
T TIGR01325       248 TL-----SLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDAV  318 (380)
T ss_pred             cH-----HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcC
Confidence            33     346777778888888888876 2221     11             13558889887433345566655

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.89  E-value=6.8e-21  Score=196.73  Aligned_cols=220  Identities=18%  Similarity=0.244  Sum_probs=148.7

Q ss_pred             EEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCC
Q psy16848        237 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ  316 (514)
Q Consensus       237 ~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~  316 (514)
                      +..++++|++.+++.+++. .+++++|++++.++..+..-.+++|+++|++||+++|+||+++ |+. ..+.+....+++
T Consensus       166 ~~~~~~~d~~~l~~~l~~~-~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~-~~~~g~~~~~gv  242 (431)
T PRK06209        166 TVTFRYNDIASLEALFEDH-PGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFR-WHMRGAQKLYGI  242 (431)
T ss_pred             ccccCCCCHHHHHHHHHhC-CCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCC-cCcchhhHHhCC
Confidence            3456688999999998753 3468899999987552222228999999999999999999996 431 122223333444


Q ss_pred             ccCceEEEcCCcccccC--CCeEEEecHHHHHH--HHhh--cCce--EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGN--IGGYIVGTKNFIDT--IRSY--AAGF--IFTTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~--~GG~l~~~~~~~~~--l~~~--~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                        .+|++  +++|++|+  ++|++++++++.+.  +...  ...+  +.+.+.+++.++++.++|+.+.++.   +.+++
T Consensus       243 --~PDi~--t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~---~~~~~  315 (431)
T PRK06209        243 --VPDLS--CFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDED---VIERL  315 (431)
T ss_pred             --Cccee--eehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccC---HHHHH
Confidence              78987  89999986  34888899888876  3111  2222  2244567899999999999986655   67778


Q ss_pred             HHHHHHHHHHHHhC----CCcc-ccCCCcEEEEEe---CC---Ccc--HHHHHHHHHHhCCeEEecccCCCCCCCCcEEE
Q psy16848        389 QDIVAYLRNELIQI----GFPV-EHTPSHIIPIKI---GN---PAL--NTKICDMLLKEKGHYVQPINYPTVPVGEEKIR  455 (514)
Q Consensus       389 ~~~~~~l~~~L~~~----g~~~-~~~~~~~~~i~l---~~---~~~--~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iR  455 (514)
                      +++.+++++.|++.    ++.. +...+.++.+.+   ..   ...  ...+.+.++ ++||++.            .++
T Consensus       316 ~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~p------------~l~  382 (431)
T PRK06209        316 HEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETI-RRGVLMP------------SLV  382 (431)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHH-HCCcccc------------ccc
Confidence            88888888777653    3321 112233333222   11   111  235677785 8999862            133


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        456 LAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       456 l~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +  +..+|++|+++++++++++++++
T Consensus       383 i--s~~ht~~dId~~l~~l~~~l~~~  406 (431)
T PRK06209        383 V--SYAHGDADIERTIDAVHGALGVY  406 (431)
T ss_pred             c--cccCCHHHHHHHHHHHHHHHHHH
Confidence            3  35689999999999999998876

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=2.9e-21  Score=196.38  Aligned_cols=212  Identities=18%  Similarity=0.192  Sum_probs=155.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++|+++++++|.+++++++||+.|+..++.++.+  +||+|+++.+.|.++...++..                 
T Consensus        52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~--~GD~Vlv~~~~y~~~~~~~~~~-----------------  112 (385)
T PRK08574         52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK--AGDRVVLPMEAYGTTLRLLKSL-----------------  112 (385)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHh-----------------
Confidence            466889999999999999999999999999999888866  9999999999998876544221                 


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       113 --------------------------------------------------------------------------------  112 (385)
T PRK08574        113 --------------------------------------------------------------------------------  112 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC-CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK-IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~-~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                  ...|+++..++. +.+.+++.+    .+ ++++|++++++||+|.++|+++|.++|+++|+++|+|++
T Consensus       113 ------------~~~g~~v~~~~~-d~~~l~~~i----~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t  175 (385)
T PRK08574        113 ------------EKFGVKVVLAYP-STEDIIEAI----KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNT  175 (385)
T ss_pred             ------------hccCcEEEEECC-CHHHHHHhc----CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECC
Confidence                        111222222221 333333333    33 689999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEE-EecHHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYI-VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      ++.+...         ..+..+.|++++|++|++++.    ||++ +.++++.+.++.....+  +..+++..++.+...
T Consensus       176 ~a~~~~~---------~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~--g~~~~p~~a~l~l~~  244 (385)
T PRK08574        176 FATPLLY---------RPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRL--GTIMQPFEAYLVLRG  244 (385)
T ss_pred             CCccccC---------ChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHcc
Confidence            9855431         112346899999999999753    4744 45678888776554433  446777777666666


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ++.+     ..+.++..++..++.+.|++.
T Consensus       245 l~tL-----~~R~~~~~~na~~la~~L~~~  269 (385)
T PRK08574        245 LKTL-----EVRFERQCRNAMAIAEFLSEH  269 (385)
T ss_pred             cCcH-----HHHHHHHHHHHHHHHHHHHcC
Confidence            6543     346666677888888888765

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.88  E-value=4.5e-21  Score=195.98  Aligned_cols=213  Identities=17%  Similarity=0.137  Sum_probs=161.5

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +..++++++++++.|.+++++++||+.|+..++.++..  +||+|+++...|......                      
T Consensus        70 p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~~~~t~~~----------------------  125 (403)
T PRK07810         70 PTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLG--AGDRLVAARSLFGSCFVV----------------------  125 (403)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhC--CCCEEEEccCCcchHHHH----------------------
Confidence            45789999999999999999999999999888888865  999999988766554321                      


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (403)
T PRK07810        126 --------------------------------------------------------------------------------  125 (403)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                            +...+...|+++++++..|.+.+++.+.    +++++|++++|+||+|.+.++++|.++|+++|+++|+|++|+
T Consensus       126 ------~~~~~~~~G~~v~~vd~~d~~~l~~ai~----~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        126 ------CNEILPRWGVETVFVDGEDLSQWEEALS----VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             ------HHHHHHHcCcEEEEECCCCHHHHHHhcC----cCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence                  1122334466666776666666666553    458999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHH-HHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFID-TIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      .+....         ....++|++++|++|++++.|    |+++++++.+. .++......  +..+++..++.+...|+
T Consensus       196 ~~~~~~---------~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~--g~~~s~~~a~l~l~~L~  264 (403)
T PRK07810        196 TPLLQR---------GLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHT--GPALSAFNAWVLLKGLE  264 (403)
T ss_pred             ccccCC---------hhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHh--CCCCCHHHHHHHHhccC
Confidence            554311         113368999999999997643    88888877554 344332222  34678888888777776


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      .+     ..+.++..++..++.+.|++.
T Consensus       265 tl-----~~R~~~~~~~a~~~a~~L~~~  287 (403)
T PRK07810        265 TL-----ALRVRHSNASALRIAEFLEGH  287 (403)
T ss_pred             cH-----HHHHHHHHHHHHHHHHHHhcC
Confidence            54     346777788888888888876

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.88  E-value=7.4e-21  Score=194.42  Aligned_cols=287  Identities=16%  Similarity=0.162  Sum_probs=191.4

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++++++++++|.+++++++||+.|+..++.++.+  +||+|+++.+.|.+....++                   
T Consensus        64 ~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l~--~Gd~Vl~~~~~y~~~~~~~~-------------------  122 (398)
T PRK07504         64 NPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVK--AGDHVVAARALFGSCRYVVE-------------------  122 (398)
T ss_pred             CchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHhC--CCCEEEEcCCchhHHHHHHH-------------------
Confidence            355789999999999999999999999998877777665  99999999988877542221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (398)
T PRK07504        123 --------------------------------------------------------------------------------  122 (398)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.+++.++..|.+.+++.+    ++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|
T Consensus       123 ---------~~~~~~G~~v~~vd~~d~e~l~~ai----~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~  189 (398)
T PRK07504        123 ---------TLLPRYGIESTLVDGLDLDNWEKAV----RPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVF  189 (398)
T ss_pred             ---------HHHhhcCeEEEEECCCCHHHHHHhc----CcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCc
Confidence                     0111234455555544555555444    456899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHH-HHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFID-TIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+....       .  ...++|++++|++|++++.|    |+++++++.+. .++......  +..+++..++.+...|
T Consensus       190 a~~~~~~-------~--~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~--g~~~s~~~A~~~l~~L  258 (398)
T PRK07504        190 ATPLFQK-------P--LELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT--GPSLSPFNAWTLLKGL  258 (398)
T ss_pred             cccccCC-------c--hhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHh--CCCCCHHHHHHHHhcc
Confidence            8554311       1  13368999999999997644    78888777654 343222222  3467888888877777


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-c-----------------ccCCCcEEEEEeCCC-ccHHHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-V-----------------EHTPSHIIPIKIGNP-ALNTKICDMLLK  433 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-----------------~~~~~~~~~i~l~~~-~~~~~~~~~Ll~  433 (514)
                      +.+     ..+.++..++...+.+.|++. ++. +                 ....++++.|.+.+. .....|++.| +
T Consensus       259 ~tl-----~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l-~  332 (398)
T PRK07504        259 ETL-----PVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNAL-K  332 (398)
T ss_pred             chH-----HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhC-C
Confidence            654     346666778888888888875 332 0                 011256899998532 2334555555 2


Q ss_pred             hCCeEEecccC------CC--------------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        434 EKGHYVQPINY------PT--------------VPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       434 ~~GI~v~~~~~------~~--------------~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      --.+.++-|..      |.              ....++.+|+++++..    .+.+++-|++.+++
T Consensus       333 ~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~----~~dl~~dl~~al~~  395 (398)
T PRK07504        333 IVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLED----TDDLIEDLAAALKK  395 (398)
T ss_pred             cceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCC----HHHHHHHHHHHHHh
Confidence            22222221110      00              0012578999999544    45555555555543

>PRK02769 histidine decarboxylase; Provisional

Probab=99.88  E-value=5.1e-20  Score=186.08  Aligned_cols=296  Identities=17%  Similarity=0.144  Sum_probs=213.4

Q ss_pred             cchHHHHHHHHHHhHcCCC--c--EEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCCh
Q psy16848         58 NSLFHEKLEEDVAKLHQKE--A--GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDV  133 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~--~--~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~  133 (514)
                      ..+..+++.+++++++|.+  .  ++|+++||++|+.++.+.....++++|++++.+|.++..+++..|.+...++... 
T Consensus        63 ~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~-  141 (380)
T PRK02769         63 SFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP-  141 (380)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCC-
Confidence            4577788999999999864  2  3677778999887776543334789999999999999988887776544332100 


Q ss_pred             HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848        134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  213 (514)
Q Consensus       134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~  213 (514)
                                                                                    .|                
T Consensus       142 --------------------------------------------------------------~g----------------  143 (380)
T PRK02769        142 --------------------------------------------------------------NG----------------  143 (380)
T ss_pred             --------------------------------------------------------------CC----------------
Confidence                                                                          00                


Q ss_pred             hccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC---C
Q psy16848        214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG---A  290 (514)
Q Consensus       214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g---v  290 (514)
                                                  .-|.+.+++.+.+. +.++.+|+++.++|++|.+.|+++|.++|+++|   +
T Consensus       144 ----------------------------~id~~~L~~~i~~~-~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~  194 (380)
T PRK02769        144 ----------------------------EIDYDDLISKIKEN-KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDY  194 (380)
T ss_pred             ----------------------------cCcHHHHHHHHHhC-CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCce
Confidence                                        11667777777665 556889999999999999999999999999998   6


Q ss_pred             EEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHHHHHHHHhhcCc-----eEeccCCcH
Q psy16848        291 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFIDTIRSYAAG-----FIFTTSLPP  363 (514)
Q Consensus       291 ~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~~l~~~~~~-----~~~~~~~~~  363 (514)
                      ++++|.+++.+..-... ...+.+. ..++|.++.|.||+++ +.| |+++.+++.++.+......     .....+.+.
T Consensus       195 ~lHVDaA~gg~~~p~~~-~~~~~d~-~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g  272 (380)
T PRK02769        195 YIHADAALSGMILPFVN-NPPPFSF-ADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNG  272 (380)
T ss_pred             EEEEEecccceeecccC-ccccCCc-cCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCc
Confidence            99999999965431000 0011222 2378999999999987 666 8888887776655321111     111223455


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecc
Q psy16848        364 TVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPI  442 (514)
Q Consensus       364 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~  442 (514)
                      ....++.++|+.+...+..++.++..++.+++.+.|++.|++... +....+.+..++    .+    +  .+|..+.+.
T Consensus       273 ~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~----~~----~--~~~w~l~~~  342 (380)
T PRK02769        273 HTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS----ER----I--WKKWHLATS  342 (380)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC----HH----H--HhCeeEccc
Confidence            667788888998888888999999999999999999998887654 445566665443    12    2  145555421


Q ss_pred             cCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        443 NYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       443 ~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                              ...+|+.+...+|++.+|++++.|.+.+...
T Consensus       343 --------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~~  373 (380)
T PRK02769        343 --------GNQAHIITMPHHNKQQIDSLIDELIFDLKNP  373 (380)
T ss_pred             --------CCEEEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence                    2489999999999999999999998877643

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=5.1e-20  Score=187.65  Aligned_cols=312  Identities=21%  Similarity=0.222  Sum_probs=204.4

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      ++-.+++.+.+.. +.      ..  ..+...++|+++++++|.+++++++|||+|+.+++.++. .++||+|+++.++|
T Consensus        14 ~~e~~~~~~~l~~-~~------~~--~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~-~~~Gd~Viv~~~~~   83 (379)
T PRK11658         14 DEELAAVKEVLRS-GW------IT--TGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALG-IGPGDEVITPSLTW   83 (379)
T ss_pred             HHHHHHHHHHHHc-CC------cc--CCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC-CCCCCEEEECCCcH
Confidence            4446667776654 11      11  135679999999999999999999999999999998873 23999999999999


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      .+...++...|++++.++.+                                                            
T Consensus        84 ~~~~~~~~~~G~~~v~vd~~------------------------------------------------------------  103 (379)
T PRK11658         84 VSTLNMIVLLGATPVMVDVD------------------------------------------------------------  103 (379)
T ss_pred             HHHHHHHHHcCCEEEEEecC------------------------------------------------------------
Confidence            99887776666665544321                                                            


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  271 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np  271 (514)
                                                                        .+++..+.+.+++..++++++|+   +.|+
T Consensus       104 --------------------------------------------------~~~~~~d~~~l~~~i~~~tkav~---~~~~  130 (379)
T PRK11658        104 --------------------------------------------------RDTLMVTPEAIEAAITPRTKAII---PVHY  130 (379)
T ss_pred             --------------------------------------------------CCcCCcCHHHHHHhcccCCeEEE---EeCC
Confidence                                                              11111222333333445688887   3456


Q ss_pred             CccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CCeEEEec-HHHHHHHH
Q psy16848        272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IGGYIVGT-KNFIDTIR  349 (514)
Q Consensus       272 tG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~GG~l~~~-~~~~~~l~  349 (514)
                      +|...++++|.++|+++|+++|+|++|++|... .+..    .+ ..+.+++.++.+|.+.. .||+++.+ +++.++++
T Consensus       131 ~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~-~~~~----~g-~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~  204 (379)
T PRK11658        131 AGAPADLDAIRAIGERYGIPVIEDAAHAVGTYY-KGRH----IG-ARGTAIFSFHAIKNITCAEGGLVVTDDDELADRLR  204 (379)
T ss_pred             CCCcCCHHHHHHHHHHcCCeEEEECCCccCCeE-CCee----cC-CCCCEEEeCCCCCcCcccCceEEEECCHHHHHHHH
Confidence            899999999999999999999999999976531 1111    11 12346675566687743 45877764 77777766


Q ss_pred             hhcC-c---------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc-c
Q psy16848        350 SYAA-G---------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP-V  406 (514)
Q Consensus       350 ~~~~-~---------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~  406 (514)
                      .... +                     .+++..++.+..+.....++     .+++..++.+++.+++.+.|++.++. +
T Consensus       205 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~-----~l~~~~~~r~~~a~~~~~~L~~~~~~~~  279 (379)
T PRK11658        205 SLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLA-----KLEALNARRREIAARYLQALADLPFQPL  279 (379)
T ss_pred             HHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCccC
Confidence            4321 1                     01122344445555555444     44567888888888888999876432 2


Q ss_pred             ccCC-----C-cEEEEEeCC---CccHHHHHHHHHHhCCeEEecccCCC--------------CCC----CCcEEEEEeC
Q psy16848        407 EHTP-----S-HIIPIKIGN---PALNTKICDMLLKEKGHYVQPINYPT--------------VPV----GEEKIRLAPT  459 (514)
Q Consensus       407 ~~~~-----~-~~~~i~l~~---~~~~~~~~~~Ll~~~GI~v~~~~~~~--------------~~~----~~~~iRl~~~  459 (514)
                      ..+.     . ..+.+.++.   +.+.+++.+.| +++||.+.....+.              .+.    ..+.+.+.++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~  358 (379)
T PRK11658        280 SLPAWPHQHAWHLFIIRVDEERCGISRDALMEAL-KERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLF  358 (379)
T ss_pred             cCCCCCCceeEEEEEEEECCccccCCHHHHHHHH-HHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCC
Confidence            1111     1 234455543   23578899999 59999865322110              000    1367778888


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l  478 (514)
                      ...+++|++++++.+++++
T Consensus       359 ~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        359 PDMTDADVDRVITALQQIA  377 (379)
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            8899999999999999875

>KOG1549|consensus

Probab=99.88  E-value=1.5e-20  Score=184.25  Aligned_cols=344  Identities=17%  Similarity=0.145  Sum_probs=213.6

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhcc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLG   96 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~   96 (514)
                      .++|..+.... +|.|.+++.+.+..+-.++....+........++.|+.+|++.|++  +.+|+.++|++|.+++..+.
T Consensus        45 vyld~~at~p~-~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~  123 (428)
T KOG1549|consen   45 VYLDNQATGPM-DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVA  123 (428)
T ss_pred             EEEecCcCCCC-CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhh
Confidence            34554433322 6899999999888643333222233333444789999999999865  35666778889988888876


Q ss_pred             ccCCCc----eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         97 KMIPGL----HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        97 ~~~~gd----~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      . ..+|    +|++-..+|+++..+++.                                                    
T Consensus       124 ~-~~~~~~~k~iitl~~eH~~v~~s~~~----------------------------------------------------  150 (428)
T KOG1549|consen  124 R-FFGDKTKKHIITLQTEHPCVLDSCRA----------------------------------------------------  150 (428)
T ss_pred             c-cccccccceEEEecccCcchhHHHHH----------------------------------------------------
Confidence            3 3566    999999999998755432                                                    


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLTQV  251 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~  251 (514)
                                                                               +...|.++.++|. ++...+.+.
T Consensus       151 ---------------------------------------------------------l~~~g~~Vt~lpv~~~~~~d~~~  173 (428)
T KOG1549|consen  151 ---------------------------------------------------------LQEEGLEVTYLPVEDSGLVDISK  173 (428)
T ss_pred             ---------------------------------------------------------HHhcCeEEEEeccCccccccHHH
Confidence                                                                     2233455666662 344555666


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +++..+++|+++.+.+++|..|+.+|+++|.++|+++|+.+++|.+|+.|..        +.+..+.++|+++.|.||++
T Consensus       174 ~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i--------~vDV~eln~D~~s~s~HK~y  245 (428)
T KOG1549|consen  174 LREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKI--------PVDVQELNADFLSISAHKIY  245 (428)
T ss_pred             HHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCc--------cccHHHcCchheeeeccccc
Confidence            6677778899999999999999999999999999999999999999998765        34444569999999999999


Q ss_pred             cCCC-eEEEecH--HHHHHHHhhcCce----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--
Q psy16848        332 GNIG-GYIVGTK--NFIDTIRSYAAGF----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--  402 (514)
Q Consensus       332 g~~G-G~l~~~~--~~~~~l~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  402 (514)
                      |++| |++++++  +.+........+.    ..+.+...+.+...-.+.++..+ ........+....+.+...+...  
T Consensus       246 gp~~iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~-~~~~~~~~~~~~~~~ll~~i~~~~~  324 (428)
T KOG1549|consen  246 GPPGIGALYVRRKRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNK-EMAYDEAIIKRLSEKLLMGIGQSLP  324 (428)
T ss_pred             CCCcceEEEEccCCCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhhCc
Confidence            9998 9999886  1111111111110    01223444555555555555432 21223333334555555554332  


Q ss_pred             CCccccC----CCcEEEEEeC--CCc-cHHHHHHHHHHhCCeEEeccc-CC--C-------CCCCCcEEEEEeCCCCCHH
Q psy16848        403 GFPVEHT----PSHIIPIKIG--NPA-LNTKICDMLLKEKGHYVQPIN-YP--T-------VPVGEEKIRLAPTPFHTRE  465 (514)
Q Consensus       403 g~~~~~~----~~~~~~i~l~--~~~-~~~~~~~~Ll~~~GI~v~~~~-~~--~-------~~~~~~~iRl~~~~~~t~e  465 (514)
                      .+....+    ......+-++  .+. ...+.....+ ..|..+.... .|  .       .......+||+++.+++++
T Consensus       325 ~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~  403 (428)
T KOG1549|consen  325 EVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVAL-SSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEE  403 (428)
T ss_pred             hhhccCCcccccccceeeecccccCcchhhhhhhhhh-cccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHH
Confidence            1111111    1122233333  211 1111111111 2222222111 00  0       0113579999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCC
Q psy16848        466 MIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       466 ~id~~~~~l~~~l~~~~~  483 (514)
                      |++++++.+.+.+..+..
T Consensus       404 di~~~~~~i~~~v~~~~~  421 (428)
T KOG1549|consen  404 DIDYLVDAIKKLVSLLRE  421 (428)
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999998887653

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.88  E-value=4.7e-20  Score=188.80  Aligned_cols=216  Identities=20%  Similarity=0.183  Sum_probs=159.7

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++++.++++.|.+++++++||+.|+..++.++.+  +||+|+++.+.|..+....                    
T Consensus        64 ~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~--~Gd~Viv~~~~y~~t~~~~--------------------  121 (403)
T PRK07503         64 NPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLR--PGDEVIVDQTLYGCTFAFL--------------------  121 (403)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC--CCCEEEEccCccchHHHHH--------------------
Confidence            356789999999999999999999999998888887765  9999999998886544211                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (403)
T PRK07503        122 --------------------------------------------------------------------------------  121 (403)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|+++++++..|.+.+++.+.    +++++|++++++||+|.+.++++|.++|+++|+++|+|++|
T Consensus       122 --------~~~~~~~G~~v~~vd~~d~~~l~~~i~----~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~  189 (403)
T PRK07503        122 --------HHGLGEFGVTVRHVDLTDPAALKAAIS----DKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTY  189 (403)
T ss_pred             --------HHHHhhCCEEEEEeCCCCHHHHHHhcC----ccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence                    111223455566666555555555443    46899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      +.+..+.      + .  ..+.|++++|++|++++.    ||+++.++++.++++........+..+++..++.+...|+
T Consensus       190 a~~~~~~------~-l--~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~  260 (403)
T PRK07503        190 CTPYLQR------P-L--ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK  260 (403)
T ss_pred             cccccCC------c-h--hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc
Confidence            8554321      1 1  236799999999999874    3888888888888764311111244678888877777665


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      .+     ..+.++..++...+.+.|++.
T Consensus       261 tl-----~~r~~~~~~na~~~a~~L~~~  283 (403)
T PRK07503        261 TL-----ALRMDRHCASAQAVAEWLARH  283 (403)
T ss_pred             hH-----HHHHHHHHHHHHHHHHHHHhC
Confidence            44     235556667777888888775

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.88  E-value=1.8e-20  Score=191.27  Aligned_cols=283  Identities=14%  Similarity=0.140  Sum_probs=192.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..++++++++++.|.+.+++++||+.|+..++. +.+  +||+|+++.+.|.++...+                    
T Consensus        53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~--~Gd~Vlv~~~~y~~~~~~~--------------------  109 (390)
T PRK08064         53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLS--KGDHVLISEDVYGGTYRMI--------------------  109 (390)
T ss_pred             ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhC--CCCEEEEccCccchHHHHH--------------------
Confidence            46788999999999999899999999998877774 444  9999999999887655221                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (390)
T PRK08064        110 --------------------------------------------------------------------------------  109 (390)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|++++.++..|.+.+++.+    ++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|
T Consensus       110 --------~~~~~~~G~~v~~v~~~d~~~l~~~l----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~  177 (390)
T PRK08064        110 --------TEVLSRFGIEHTFVDMTNLEEVAQNI----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTF  177 (390)
T ss_pred             --------HHHHHHcCCEEEEECCCCHHHHHHhc----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence                    11223345566666655555444444    456899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+...         .....++|+++.|+||++++.    +|+++. ++++.+.++.....+  +...++..+..+...+
T Consensus       178 ~~~~~~---------~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~--g~~~~~~~a~l~~~gl  246 (390)
T PRK08064        178 LTPLLQ---------KPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSF--GAVLGVQDCWLVLRGL  246 (390)
T ss_pred             Cccccc---------CchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHccc
Confidence            844321         111336899999999999642    276665 467888887766554  4455555555433333


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhCC-C--------c------cc----cCCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQIG-F--------P------VE----HTPSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------~------~~----~~~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +     .+...+++..+....+.+.|++.+ +        +      +.    ...++++.|.+.+.   .+. ..+++.
T Consensus       247 ~-----tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~---~~~-~~f~~~  317 (390)
T PRK08064        247 K-----TLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSE---EAV-RQFVSH  317 (390)
T ss_pred             C-----cHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCH---HHH-HHHHHh
Confidence            2     344567777888888888888751 1        1      00    12455888888642   233 333345


Q ss_pred             CCe---EEecc------------cCCCCC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        435 KGH---YVQPI------------NYPTVP--------VGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       435 ~GI---~v~~~------------~~~~~~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .++   .++-|            ..+..+        ..++.+|+|++..++++.++.+.++|++
T Consensus       318 l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~  382 (390)
T PRK08064        318 VKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSY  382 (390)
T ss_pred             CCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence            565   33322            111111        1257899999988777777777777765

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.88  E-value=3.2e-20  Score=188.20  Aligned_cols=309  Identities=19%  Similarity=0.186  Sum_probs=210.3

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      .+-.+++.+.++.--.        ....+..+++|+++++++|.++++.++|||.|+.+++.++. +++||+|+++..++
T Consensus         5 ~e~~~~v~~~l~s~~~--------~~~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~-~~~gdeVi~p~~t~   75 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWL--------STYGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALG-LGPGDEVIVPAYTF   75 (363)
T ss_dssp             HHHHHHHHHHHHHTCC--------SSSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTT-GGTTSEEEEESSS-
T ss_pred             HHHHHHHHHHHHhCCc--------cCCCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcC-CCcCceEecCCCcc
Confidence            3456677777776211        11147889999999999999999999999999999998875 56999999999999


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      .++..++...|++++.+..                                                             
T Consensus        76 ~~~~~ai~~~G~~pv~~Di-------------------------------------------------------------   94 (363)
T PF01041_consen   76 PATASAILWAGAEPVFVDI-------------------------------------------------------------   94 (363)
T ss_dssp             THHHHHHHHTT-EEEEE-B-------------------------------------------------------------
T ss_pred             hHHHHHHHHhccEEEEEec-------------------------------------------------------------
Confidence            9999887777666554322                                                             


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  271 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np  271 (514)
                                                                       +.+++..+.+.+++..++++++|++.+..  
T Consensus        95 -------------------------------------------------~~~~~~id~~~~~~~i~~~t~ai~~~h~~--  123 (363)
T PF01041_consen   95 -------------------------------------------------DPETLNIDPEALEKAITPKTKAILVVHLF--  123 (363)
T ss_dssp             -------------------------------------------------ETTTSSB-HHHHHHHHHTTEEEEEEE-GG--
T ss_pred             -------------------------------------------------cCCcCCcCHHHHHHHhccCccEEEEecCC--
Confidence                                                             12344555555555556778999988875  


Q ss_pred             CccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEec-HHHHHH
Q psy16848        272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGT-KNFIDT  347 (514)
Q Consensus       272 tG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~-~~~~~~  347 (514)
                       |...++++|.++|+++|++||+|.+|++|..- .++    .-+.  --|+.++||+  |.+.. .||+++.+ +++.++
T Consensus       124 -G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~-~g~----~~G~--~gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~  195 (363)
T PF01041_consen  124 -GNPADMDAIRAIARKHGIPLIEDAAQAFGARY-KGR----PVGS--FGDIAIFSFHPTKIITTGEGGAVVTNDPELAER  195 (363)
T ss_dssp             -GB---HHHHHHHHHHTT-EEEEE-TTTTT-EE-TTE----ETTS--SSSEEEEESSTTSSS-SSS-EEEEESTHHHHHH
T ss_pred             -CCcccHHHHHHHHHHcCCcEEEccccccCcee-CCE----eccC--CCCceEecCCCCCCCcCCCCeeEEecHHHHHHH
Confidence             88889999999999999999999999987641 111    1111  2377777884  88854 45888775 667777


Q ss_pred             HHhhcCc---------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--cC
Q psy16848        348 IRSYAAG---------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE--HT  409 (514)
Q Consensus       348 l~~~~~~---------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~  409 (514)
                      ++.....               .++...++...++.+...|+.+     ++..++.+++.+++.+.|... ++...  ..
T Consensus       196 ~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L-----~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~  270 (363)
T PF01041_consen  196 ARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL-----DEIIARRRENAQRYREALAGIPGIKPPPIPD  270 (363)
T ss_dssp             HHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHTTGTTEEEEGCGT
T ss_pred             hhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            7654321               2334578888888888888755     346777788888899999887 44221  11


Q ss_pred             C---Cc--EEEEEeCCC--ccHHHHHHHHHHhCCeEEecccC-CCC--C---------C---------CCcEEEEEeCCC
Q psy16848        410 P---SH--IIPIKIGNP--ALNTKICDMLLKEKGHYVQPINY-PTV--P---------V---------GEEKIRLAPTPF  461 (514)
Q Consensus       410 ~---~~--~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~-~~~--~---------~---------~~~~iRl~~~~~  461 (514)
                      .   ..  .+.+.+++.  .+.+++.+.|. ++||.+.+... +..  +         .         ..+.+.+.+...
T Consensus       271 ~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~-~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~  349 (363)
T PF01041_consen  271 GAERSSYYRFPIRLPDEALADRDELVEALR-ARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPR  349 (363)
T ss_dssp             TTEEBCESSEEEEETCCGCSTHHHHHHHHH-HTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTT
T ss_pred             cccccccccccccccccccchHHHHHHHHH-HCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCC
Confidence            1   12  456777654  35788999994 99999986552 110  0         0         125888999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLL  475 (514)
Q Consensus       462 ~t~e~id~~~~~l~  475 (514)
                      ++++|++++++.|+
T Consensus       350 lt~edv~~I~~~ir  363 (363)
T PF01041_consen  350 LTEEDVDYIAEAIR  363 (363)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhhccC
Confidence            99999999999875

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.88  E-value=3.9e-20  Score=201.00  Aligned_cols=218  Identities=17%  Similarity=0.223  Sum_probs=157.8

Q ss_pred             hHHHHHHhh----ccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848        246 NHLTQVLEN----MDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG  315 (514)
Q Consensus       246 ~~l~~~l~~----~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~  315 (514)
                      +.+++.|++    ...++++++++|++ ++..|.+.+    +++|+++|++||+++|.||+++ +|++|+.+  ..+..+
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~f--a~e~~g  644 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVES--AWELLG  644 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchh--hHHhcC
Confidence            456666654    22457899999995 888899876    8999999999999999999999 77776543  234455


Q ss_pred             CccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhc----CceEeccCCcHHHHHHHHHHHHHhhhch-HHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYA----AGFIFTTSLPPTVLAGAREAIRILSSQE-GVELRA  386 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~  386 (514)
                      +  .|||+  +++|.+++ |    |.+++++++.+.+....    ...+++++.+++.++++.++|+.+.++. ..++.+
T Consensus       645 v--~PDIi--~~gKgLtg-G~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~  719 (817)
T PLN02974        645 C--KPDIA--CYAKLLTG-GLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIP  719 (817)
T ss_pred             C--CCCEE--eecccccC-CCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            4  79999  99999976 4    78889999988875211    1133466899999999999999987653 234455


Q ss_pred             HHHHHHHHHHHHHH-hC-CCcc---ccCCCcEEEEEeCCCc--------cHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        387 KHQDIVAYLRNELI-QI-GFPV---EHTPSHIIPIKIGNPA--------LNTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       387 ~~~~~~~~l~~~L~-~~-g~~~---~~~~~~~~~i~l~~~~--------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                      +..++.+++.+.|. .+ ..+.   +...|.++.+++.+..        ....+.+.++.++||.+++.        .+.
T Consensus       720 ~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~--------Gnv  791 (817)
T PLN02974        720 PGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL--------GNV  791 (817)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec--------CCE
Confidence            55566566665552 22 2222   3446678888875321        13456777743899999752        247


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        454 IRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +++.++..++++++++++++|.+.+
T Consensus       792 i~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        792 VYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            8998888999999999999998765

>KOG0256|consensus

Probab=99.87  E-value=3.1e-20  Score=178.13  Aligned_cols=231  Identities=13%  Similarity=0.080  Sum_probs=168.3

Q ss_pred             ChhHHHHHHhhcc--CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCC-
Q psy16848        244 DVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQ-  316 (514)
Q Consensus       244 d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~-  316 (514)
                      +.+.+|.++.++.  +.+.+.+++.||+||.|.+.+   +..+.+++.++++.+|+||+|+...++. ...++.++... 
T Consensus       209 tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~  288 (471)
T KOG0256|consen  209 TVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDP  288 (471)
T ss_pred             cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhcc
Confidence            3566666666543  456889999999999999999   7888888999999999999999544433 23333322211 


Q ss_pred             --ccCceEEEcCCcccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHH--HhhhchHHHHHHHH
Q psy16848        317 --LHNMDIISGTLGKAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR--ILSSQEGVELRAKH  388 (514)
Q Consensus       317 --~~~~di~~~S~sK~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~  388 (514)
                        +.+..-++.|+||-+|.+|   |+++..+ +++....+.....    ..|+..+..+...|.  .+.+..+++...++
T Consensus       289 ~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~----~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl  364 (471)
T KOG0256|consen  289 HLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG----LVSSQTQYLLASLLSDEEFTREYLRENNKRL  364 (471)
T ss_pred             ccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc----CCcHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence              2345567779999999999   9998765 5555555544322    456666665555554  34456778899999


Q ss_pred             HHHHHHHHHHHHhCCCccccCCCc-EEEEEeCC----C--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        389 QDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGN----P--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~----~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      +.+..++.+.|+++|+++..+.++ +.|+.+..    .  ....++.++++.+-++.++||..|.+.. ++|+|++|. .
T Consensus       365 ~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~E-pGWFRvcFA-n  442 (471)
T KOG0256|consen  365 RIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHE-PGWFRVCFA-N  442 (471)
T ss_pred             HHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecC-CCeEEEEec-c
Confidence            999999999999999999877655 56666532    1  2234677788755599999999766543 789999998 5


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~  480 (514)
                      +.++.++-++++++.++.+
T Consensus       443 ~~~~t~~~am~Ri~~~~~~  461 (471)
T KOG0256|consen  443 MSEETLEVAMRRLKQFLDS  461 (471)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            6666677799999998874

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.87  E-value=5.2e-20  Score=188.48  Aligned_cols=332  Identities=13%  Similarity=0.082  Sum_probs=225.8

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC----cEEE--Eeccccccccchhhcccc------
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE----AGLV--FTSCYVANDSTLFTLGKM------   98 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~--~~sGt~a~~~~l~~l~~~------   98 (514)
                      +|++.+.+.+.+.....++.+.   ....++.+++.+++++++|.+    ..++  +++||+||..++.+....      
T Consensus        54 ~p~~~~~~~~~l~~~~~np~s~---~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~  130 (431)
T TIGR01788        54 EPEARKLMDETINKNMIDKDEY---PQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME  130 (431)
T ss_pred             CHHHHHHHHHHHhcCCCCcccC---ccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888887432222221   123478889999999999976    3444  577899998888654310      


Q ss_pred             C-----CCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         99 I-----PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        99 ~-----~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      .     +..+|++++.+|.++..+++..|.++..++.+.                                         
T Consensus       131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-----------------------------------------  169 (431)
T TIGR01788       131 AAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-----------------------------------------  169 (431)
T ss_pred             hcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-----------------------------------------
Confidence            0     124799999999999988877776544332210                                         


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                           +.+                                            .-|.+.+++.++
T Consensus       170 ---------------------~~~--------------------------------------------~vd~~~L~~~i~  184 (431)
T TIGR01788       170 ---------------------GRY--------------------------------------------VIDPEQVVEAVD  184 (431)
T ss_pred             ---------------------Cce--------------------------------------------eeCHHHHHHHHh
Confidence                                 000                                            004455555554


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHc------CCEEEEeccccccc----cCCCCCCccccCCCccCceEE
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH------GALTFVDEVHAVGL----YGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~------gv~li~Dea~~~g~----~g~~~~~~~~~~~~~~~~di~  323 (514)
                          +++.+|++..++|.+|.+.|+++|.++|+++      |+++++|.+|+.+.    .++..    ..+. ..++|.+
T Consensus       185 ----~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~----~~~~-~~~~DSi  255 (431)
T TIGR01788       185 ----ENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLE----WDFR-LPRVKSI  255 (431)
T ss_pred             ----hCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCch----hhcC-CCCceEE
Confidence                4478999999999999999999999999999      99999999999333    12111    0111 3478999


Q ss_pred             EcCCcccc-cCCC-eEEEecHH--HHHHHHhh---cC----ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        324 SGTLGKAF-GNIG-GYIVGTKN--FIDTIRSY---AA----GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       324 ~~S~sK~l-g~~G-G~l~~~~~--~~~~l~~~---~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      +.|.||++ ++.| |+++.++.  +.+.+...   ..    ..+...+-+..........|..+...++.++.++..++.
T Consensus       256 s~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la  335 (431)
T TIGR01788       256 NVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVA  335 (431)
T ss_pred             EECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            99999987 8888 88876643  32333211   00    011111112222333444555555678889999999999


Q ss_pred             HHHHHHHHhC-CCccccC--CCcEEEEEeCC----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHH
Q psy16848        393 AYLRNELIQI-GFPVEHT--PSHIIPIKIGN----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE  465 (514)
Q Consensus       393 ~~l~~~L~~~-g~~~~~~--~~~~~~i~l~~----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e  465 (514)
                      +++.+.|++. ++++..+  ..+++.|++..    ..+..++.+.| .++|+.+.....+..-.+..++|+++....+++
T Consensus       336 ~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L-~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~  414 (431)
T TIGR01788       336 RYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRL-RERGWIVPAYTLPKNAEDIVVMRIVVREGFSRD  414 (431)
T ss_pred             HHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHH-HHCCCcccCCCCCCccCCeEEEEEEecCCCCHH
Confidence            9999999998 5776643  56688888763    24567888888 589998654444333345678999998788999


Q ss_pred             HHHHHHHHHHHHHHHc
Q psy16848        466 MIDKFVTDLLAVWKSL  481 (514)
Q Consensus       466 ~id~~~~~l~~~l~~~  481 (514)
                      .++++++.|++++.++
T Consensus       415 ~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       415 LAELLIEDIEAALAYL  430 (431)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.87  E-value=1.7e-20  Score=189.88  Aligned_cols=242  Identities=14%  Similarity=0.094  Sum_probs=173.7

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +...+++++++++.+.+.+++++||++|+..++.++.+  +||+|++.++.|......+.                    
T Consensus        61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~--~GD~Vvv~~~~Y~~t~~l~~--------------------  118 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLK--AGDHLLMVDSCYEPTRDLCD--------------------  118 (394)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHH--------------------
Confidence            44679999999999888899999999999988888866  99999999988877653211                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (394)
T PRK09028        119 --------------------------------------------------------------------------------  118 (394)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                              ..+...|.++.+++..+.+.+++.    .+++|++|++++|+||+|.+.++++|.++|+++|+++++|++|+
T Consensus       119 --------~~l~~~Gi~v~~v~~~~~e~l~~~----l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a  186 (394)
T PRK09028        119 --------KILKGFGIETTYYDPMIGEGIREL----IRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWA  186 (394)
T ss_pred             --------HhhhhcceEEEEECCCCHHHHHHh----cCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence                    011123444555544343333333    35679999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI  375 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~  375 (514)
                      .+..         ...+..++|+++.|.+|++++.|    |+++.++++.+.+.......  +..+++..+..+...|+.
T Consensus       187 ~p~~---------~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~--G~~~~p~~a~l~~rgl~T  255 (394)
T PRK09028        187 SPIN---------SRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLM--GQCTSPDDVYLAMRGLRT  255 (394)
T ss_pred             cccc---------CCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHcccCc
Confidence            5432         11224589999999999998764    87777777777665443332  446778777766666653


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-cc-----------------cCCCcEEEEEeCCC--ccHHHHHHHH
Q psy16848        376 LSSQEGVELRAKHQDIVAYLRNELIQI-GFP-VE-----------------HTPSHIIPIKIGNP--ALNTKICDML  431 (514)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-----------------~~~~~~~~i~l~~~--~~~~~~~~~L  431 (514)
                           +.-++++..++...+.+.|++. .+. +.                 ...++++.|.+.+.  .....|.+.|
T Consensus       256 -----L~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l  327 (394)
T PRK09028        256 -----LGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGM  327 (394)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhC
Confidence                 3347788888999999999886 221 10                 11356899998632  2334555555

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.87  E-value=1.9e-20  Score=190.17  Aligned_cols=286  Identities=18%  Similarity=0.170  Sum_probs=194.9

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +..+++++++++++|.+++++++||+.|+..++. +.+  +||+|+++++.|.++...++                    
T Consensus        47 p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll~--~Gd~Vl~~~~~y~~~~~~~~--------------------  103 (378)
T TIGR01329        47 PTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LLN--NGDEIIAGDDLYGGTDRLLT--------------------  103 (378)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC--CCCEEEEcCCCchHHHHHHH--------------------
Confidence            4578999999999999999999999988766554 544  99999999988877653211                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (378)
T TIGR01329       104 --------------------------------------------------------------------------------  103 (378)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                              ..+...|.+++.++..|.+.+++.+    +++++++++++++||+|.+.++++|.++|+++|+++|+|+++.
T Consensus       104 --------~~~~~~G~~v~~vd~~d~~~le~~i----~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~  171 (378)
T TIGR01329       104 --------QVVPRSGVVVVHVDTTDLDKVKAAL----GPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMM  171 (378)
T ss_pred             --------HHHHHcCcEEEEeCCCCHHHHHHhc----CcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence                    1112335556666655555555554    3568999999999999999999999999999999999999986


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      .+...         .....+.|++++|++|++++.    ||+++. ++.+.+++.......  +...++..+..+...++
T Consensus       172 ~~~~~---------~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~--G~~~~~~~a~l~~~~l~  240 (378)
T TIGR01329       172 SPLLC---------NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNST--GSGLAPFDCWLLLRGIK  240 (378)
T ss_pred             ccccC---------ChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhc--CCcCCHHHHHHHHccCC
Confidence            44321         111236899999999999753    488876 455656666544322  33455655544333332


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC-CC--------cc------c----cCCCcEEEEEeCCCccHHHHHHHHHHhC
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI-GF--------PV------E----HTPSHIIPIKIGNPALNTKICDMLLKEK  435 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~------~----~~~~~~~~i~l~~~~~~~~~~~~Ll~~~  435 (514)
                           .+..+.++..++...+.+.|++. .+        +-      .    ...++++.|.+.+.....++++.| +..
T Consensus       241 -----tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L-~~~  314 (378)
T TIGR01329       241 -----TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEAT-KLF  314 (378)
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhC-cCc
Confidence                 34556777778888888888765 11        10      0    113468889985433367888888 577


Q ss_pred             CeEEecccCCCC------------C--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        436 GHYVQPINYPTV------------P--------VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       436 GI~v~~~~~~~~------------~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++.++-|.....            +        ..++.+|+|++.    |+.+.+++-|++.+++.
T Consensus       315 ~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~  376 (378)
T TIGR01329       315 SITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFVTA  376 (378)
T ss_pred             ccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhc
Confidence            777764442110            0        125799999994    45666666666666543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.87  E-value=1.9e-20  Score=190.97  Aligned_cols=286  Identities=13%  Similarity=0.021  Sum_probs=190.5

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..++++++++++.|.+++++++||++|+..++.++.+  +||+|+++.+.|......+.                   
T Consensus        64 ~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~--~GD~Vl~~~~~y~~~~~~~~-------------------  122 (394)
T PRK07050         64 TPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVK--AGDDVLIPDNAYGPNRDHGE-------------------  122 (394)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhC--CCCEEEEecCCcccHHHHHH-------------------
Confidence            355689999999999999999999999999999988866  99999999999987653210                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (394)
T PRK07050        123 --------------------------------------------------------------------------------  122 (394)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|+++.+++..+.+.+    ++..++++++|++++|+||+|...++++|.++|+++|+++|+|++|
T Consensus       123 ---------~~~~~~Gi~v~~vd~~~~~~l----~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~  189 (394)
T PRK07050        123 ---------WLARDFGITVRFYDPLIGAGI----ADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTY  189 (394)
T ss_pred             ---------HHHHhcCeEEEEECCCCHHHH----HHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCc
Confidence                     111223445555553333333    3334567899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+..         ..+...+.|+++.|++|.+++.    ||++++ ++++.+.++..+...  +...++..+..+...+
T Consensus       190 a~~~~---------~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~--G~~~~~~~a~l~lr~l  258 (394)
T PRK07050        190 SAGLA---------FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRL--GIGVSADDCSLVLRGL  258 (394)
T ss_pred             ccccc---------cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHcCC
Confidence            86543         1222347899999999999752    366654 678888776554433  3355665554443333


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC---ccHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP---ALNTKICDML  431 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~---~~~~~~~~~L  431 (514)
                      +     .+..+.++..++...+.+.|++. ++..+                  ...++++.+.+...   ....++.+.|
T Consensus       259 ~-----tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l  333 (394)
T PRK07050        259 P-----SLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEAL  333 (394)
T ss_pred             C-----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcC
Confidence            2     33346667777777888888876 22110                  11245777887532   4466777777


Q ss_pred             HHhCCeEEecccCCC--------------CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        432 LKEKGHYVQPINYPT--------------VPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       432 l~~~GI~v~~~~~~~--------------~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                       +..++.++-|....              .+...+.||+|++....++-++.+-++|.
T Consensus       334 -~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGlE~~~dl~~dl~~al~  390 (394)
T PRK07050        334 -ELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGLEDEADLIADLEQALE  390 (394)
T ss_pred             -CCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCcCCHHHHHHHHHHHHH
Confidence             46665544222111              01123689999996543333444444443

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=2.1e-20  Score=190.52  Aligned_cols=243  Identities=16%  Similarity=0.169  Sum_probs=170.9

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+++++++++.|.+.+++++||++|+..++.++..  +||+|+++.+.|.++...+..                  
T Consensus        60 ~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~y~~t~~~~~~------------------  119 (388)
T PRK07811         60 NPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLR--PGDHIVIPNDAYGGTFRLIDK------------------  119 (388)
T ss_pred             CccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchHHHHHHHH------------------
Confidence            356789999999999999999999999999999988866  999999999999876533211                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (388)
T PRK07811        120 --------------------------------------------------------------------------------  119 (388)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                .+...|.++..++..|.+.+++.+.    +++++|++++|+||+|...++++|.++|+++|+++|+|++|
T Consensus       120 ----------~~~~~gi~~~~~d~~d~e~l~~~i~----~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~  185 (388)
T PRK07811        120 ----------VFTRWGVEYTPVDLSDLDAVRAAIT----PRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTF  185 (388)
T ss_pred             ----------hCcCCCeEEEEeCCCCHHHHHHhcC----cCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCC
Confidence                      0011234455555545555555553    46899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+....      +   ...+.|++++|++|++++.    ||+++. ++++.+.+.......  +...++..+..+...|
T Consensus       186 a~~~~~~------p---~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~--g~~~s~~~a~l~~~~L  254 (388)
T PRK07811        186 ASPYLQQ------P---LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGA--GAVPGPFDAYLTLRGL  254 (388)
T ss_pred             CccccCC------c---hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHhcc
Confidence            8654311      1   1236799999999999874    487776 466767665444332  2345565555555544


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDML  431 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~L  431 (514)
                      +.     +..++++..++...+.+.|++. ++..+                  ...|+++.|.+... .....|.+.|
T Consensus       255 ~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l  327 (388)
T PRK07811        255 KT-----LAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCART  327 (388)
T ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhC
Confidence            43     3456677788888888888876 32210                  11355899998632 2344555554

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.87  E-value=9.5e-20  Score=186.23  Aligned_cols=317  Identities=18%  Similarity=0.173  Sum_probs=211.9

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      ++-.+++.+.+....       +.  ..+...++++.+++++|.+++++++|||+|+..++.++. .++||.|+++.++|
T Consensus        10 ~~~~~~v~~~~~~~~-------~~--~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~-~~~Gd~Viv~~~~~   79 (380)
T TIGR03588        10 QDDIDAVVEVLKSDF-------LT--QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALG-VGPGDRVWTTPITF   79 (380)
T ss_pred             HHHHHHHHHHHhcCC-------cc--CChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcC-CCCCCEEEeCCcch
Confidence            344666777666411       11  135578999999999999999999999999999988872 33999999999999


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      .+...++...|++++.++.+. +.                                                        
T Consensus        80 ~~~~~~~~~~G~~~~~~~~~~-~~--------------------------------------------------------  102 (380)
T TIGR03588        80 VATANCALYCGAKVDFVDIDP-DT--------------------------------------------------------  102 (380)
T ss_pred             HHHHHHHHHcCCEEEEEecCC-Cc--------------------------------------------------------
Confidence            998877777777766543210 00                                                        


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  271 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np  271 (514)
                                                                       ...|.+.+++.+.+...+++++|++.+   +
T Consensus       103 -------------------------------------------------~~~d~~~l~~~i~~~~~~~t~~v~~~~---~  130 (380)
T TIGR03588       103 -------------------------------------------------GNIDEDALEKKLAAAKGKLPKAIVPVD---F  130 (380)
T ss_pred             -------------------------------------------------CCcCHHHHHHHhhcccCCCceEEEEeC---C
Confidence                                                             001445555555433225678887544   5


Q ss_pred             CccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEe-cHHHHHH
Q psy16848        272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVG-TKNFIDT  347 (514)
Q Consensus       272 tG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~-~~~~~~~  347 (514)
                      +|...++++|.++|++||+++|+|++|++|.. ..+..+. .   ....|+.++|+|  |+++. .||+++. ++++.+.
T Consensus       131 ~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~~~~g-~---~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~  205 (380)
T TIGR03588       131 AGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGGKPVG-N---CRYADATVFSFHPVKIITTAEGGAVTTNDEELAER  205 (380)
T ss_pred             CCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCCEeCC-C---ccccceEEEecCCCCcccccCceEEEECCHHHHHH
Confidence            79999999999999999999999999997753 1111111 0   012388888987  88854 4576665 5677776


Q ss_pred             HHhhcCc-----------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        348 IRSYAAG-----------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       348 l~~~~~~-----------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      ++.....                       .+++..++....+.+...|+.+     +++.++.+++.+++.+.|... +
T Consensus       206 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l-----~~~~~~r~~~~~~~~~~L~~~~~  280 (380)
T TIGR03588       206 MRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL-----DRFVAKRREIAARYDRLLKDLPY  280 (380)
T ss_pred             HHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCC
Confidence            6532110                       1122345666666666666543     457788889999999999887 3


Q ss_pred             CccccC-C----Cc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCC---------CC---------CCcEEEEE
Q psy16848        404 FPVEHT-P----SH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTV---------PV---------GEEKIRLA  457 (514)
Q Consensus       404 ~~~~~~-~----~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~---------~~---------~~~~iRl~  457 (514)
                      +.+..+ .    .. ++.+.+..  ....+++.+.| +++||.++....+..         ..         ..+.++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP  359 (380)
T TIGR03588       281 FTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEAL-RAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLP  359 (380)
T ss_pred             ccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHH-HHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcC
Confidence            433222 1    11 33444542  24578899999 599999874432210         00         12689999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHH
Q psy16848        458 PTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++...|++|++++++.+++++
T Consensus       360 ~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       360 LHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999998864

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.87  E-value=6.4e-20  Score=191.99  Aligned_cols=331  Identities=15%  Similarity=0.135  Sum_probs=212.9

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCc-CcccCcchHHHHHHHHHHhHcCCCcEEEE-eccccccccchhhc--cccCCCc---
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGT-RNISGNSLFHEKLEEDVAKLHQKEAGLVF-TSCYVANDSTLFTL--GKMIPGL---  102 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~i~~-~sGt~a~~~~l~~l--~~~~~gd---  102 (514)
                      -+|.+.+++.+.-...+..+-.+ ....|..+...++++++++++|.+.+.+. ++|+.+...++..+  ....+||   
T Consensus        82 ~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~  161 (481)
T PRK04366         82 YNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKR  161 (481)
T ss_pred             CCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCC
Confidence            36788888877532222211111 24557778899999999999998876555 56666554433211  1123565   


Q ss_pred             -eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEE
Q psy16848        103 -HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF  181 (514)
Q Consensus       103 -~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (514)
                       .|+++.+.|++....++..|.+++.++.+                                                  
T Consensus       162 ~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~--------------------------------------------------  191 (481)
T PRK04366        162 TEVIVPDSAHGTNPASAAMAGFKVVEIPSN--------------------------------------------------  191 (481)
T ss_pred             CEEEEcCCccHhHHHHHHHcCCEEEEeecC--------------------------------------------------
Confidence             99999999999887766666655543221                                                  


Q ss_pred             eeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCce
Q psy16848        182 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK  261 (514)
Q Consensus       182 ~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~  261 (514)
                                                                                   .++..+.+.+++..+++++
T Consensus       192 -------------------------------------------------------------~~~~~D~e~L~~~i~~~t~  210 (481)
T PRK04366        192 -------------------------------------------------------------EDGLVDLEALKAAVGEDTA  210 (481)
T ss_pred             -------------------------------------------------------------CCCCcCHHHHHhhcccCCe
Confidence                                                                         1122222333333345688


Q ss_pred             EEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC------C
Q psy16848        262 LVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN------I  334 (514)
Q Consensus       262 ~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~------~  334 (514)
                      ++++++|+ ++|.. .++++|.++|+++|+++++|+++..+..+..     +..  ..++|++++|.||+++.      +
T Consensus       211 ~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~-----~~~--~~GaD~~~~~~hK~l~~P~g~Ggp  282 (481)
T PRK04366        211 ALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKA-----RPG--DMGFDVVHLNLHKTFSTPHGGGGP  282 (481)
T ss_pred             EEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccC-----Ccc--ccCCCEEEEechhhcCCCCCCCCC
Confidence            99999876 99987 4799999999999999999999985544311     111  34789999999999863      2


Q ss_pred             C-eEEEecHHHHHHHHhhc-----CceEec------------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        335 G-GYIVGTKNFIDTIRSYA-----AGFIFT------------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       335 G-G~l~~~~~~~~~l~~~~-----~~~~~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      | |++++++++.+.+....     ..+.++            ++.+...+.++...+..+..+++.++.++...+.+++.
T Consensus       283 ~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~  362 (481)
T PRK04366        283 GSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLK  362 (481)
T ss_pred             CeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 78888888777663110     011111            11122334444455555555666777788888999999


Q ss_pred             HHHHhC-CCccccCCCcEEEEEeC----CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q psy16848        397 NELIQI-GFPVEHTPSHIIPIKIG----NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFV  471 (514)
Q Consensus       397 ~~L~~~-g~~~~~~~~~~~~i~l~----~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~  471 (514)
                      +.|+++ .+.+..+...-+.+..+    .+.+..++.+.|. ++||.+....++..  ....+|++++..+|++|+|+++
T Consensus       363 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~~~~p~~--~~~~l~is~~e~~t~edid~l~  439 (481)
T PRK04366        363 ARLKDIYDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLL-DYGFHPPTIYFPLI--VPEALMIEPTETESKETLDAFI  439 (481)
T ss_pred             HHhHhhCcccCCCCeeEEEEEECccccccCCCHHHHHHHHH-HCCccCCccccccc--cCCeEEEcccCCCCHHHHHHHH
Confidence            999986 33221111112223221    1235788999995 99999763333221  2468999999999999999999


Q ss_pred             HHHHHHHHHcC
Q psy16848        472 TDLLAVWKSLD  482 (514)
Q Consensus       472 ~~l~~~l~~~~  482 (514)
                      +.|+++.++..
T Consensus       440 ~~l~~i~~~~~  450 (481)
T PRK04366        440 AAMKQIAEEAK  450 (481)
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

>PRK07049 methionine gamma-lyase; Validated

Probab=99.87  E-value=4.7e-20  Score=189.79  Aligned_cols=217  Identities=17%  Similarity=0.152  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +....+++.++++.|.+.+++++||++|+..++.+++.  +||+|+++.+.|......+.                    
T Consensus        83 Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~--~Gd~Vv~~~p~Y~~~~~~~~--------------------  140 (427)
T PRK07049         83 PNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVR--PGDVILHSQPLYGGTETLLA--------------------  140 (427)
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCCcccHHHHHH--------------------
Confidence            45689999999999999999999999998888888876  99999999998877653321                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (427)
T PRK07049        141 --------------------------------------------------------------------------------  140 (427)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhcc-CCCceEEEEecCCCCCccccCHHHHHHHHHH------cCCE
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICPLKELCEVSHQ------HGAL  291 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~------~gv~  291 (514)
                              ..+...|.+++.++ ..|.+.+++.+.+.. .+++++|++++|+||||.++++++|.++++.      ++++
T Consensus       141 --------~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~  212 (427)
T PRK07049        141 --------KTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPI  212 (427)
T ss_pred             --------HHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCE
Confidence                    01112233433333 235555666665432 3468999999999999999999999999988      8999


Q ss_pred             EEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHH
Q psy16848        292 TFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLA  367 (514)
Q Consensus       292 li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  367 (514)
                      +|+|++|.....         ...+..++|+++.|+||.+|+ +|   |++++++++++.+......+  +..+++..+.
T Consensus       213 vvvDety~~~~~---------~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~--g~~ls~~~a~  281 (427)
T PRK07049        213 IACDNTLLGPVF---------QKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAI--GTQLDPHSCW  281 (427)
T ss_pred             EEEECCcccccc---------CCccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHH
Confidence            999999862211         011123679999999999985 44   99999999988887765554  4567888888


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        368 GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       368 a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ++...++.     +...+++..++++.+.+.|++.
T Consensus       282 l~~r~L~t-----l~~R~~~~~~~a~~la~~L~~~  311 (427)
T PRK07049        282 MLGRSLET-----LVLRMERANRNARAVAEFLRDH  311 (427)
T ss_pred             HHHcCCCh-----HHHHHHHHHHHHHHHHHHHHhC
Confidence            77776653     3345667788899999999886

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.87  E-value=1.9e-19  Score=183.45  Aligned_cols=309  Identities=13%  Similarity=0.152  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhh
Q psy16848         35 RKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASM  114 (514)
Q Consensus        35 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~  114 (514)
                      .+++.+.+.. +.       .+|..+..+++++++++++|.+++++++||++|+..++.++. .++||+|+++.++|.++
T Consensus        14 ~~~~~~~l~~-~~-------~~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~-~~~Gd~Viv~~~t~~~~   84 (375)
T PRK11706         14 LDYIQQAMSS-GK-------LCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLD-IQPGDEVIMPSYTFVST   84 (375)
T ss_pred             HHHHHHHHHc-CC-------ccCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC-CCCCCEEEECCCCcHHH
Confidence            5556666654 11       224457889999999999999999999999999877766553 34999999999999999


Q ss_pred             hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccC
Q psy16848        115 IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEH  194 (514)
Q Consensus       115 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  194 (514)
                      ..+++..|++++.++.+. +.                     |                                     
T Consensus        85 ~~~~~~~G~~~v~~d~d~-~~---------------------~-------------------------------------  105 (375)
T PRK11706         85 ANAFVLRGAKIVFVDIRP-DT---------------------M-------------------------------------  105 (375)
T ss_pred             HHHHHHcCCEEEEEecCC-Cc---------------------C-------------------------------------
Confidence            988887777766543210 00                     0                                     


Q ss_pred             CCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCcc
Q psy16848        195 GAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  274 (514)
Q Consensus       195 ~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~  274 (514)
                                                                     ..|.+.+++.+    ++++++|++.+   ++|.
T Consensus       106 -----------------------------------------------~~d~~~le~~i----~~~tk~i~~~~---~~G~  131 (375)
T PRK11706        106 -----------------------------------------------NIDETLIEAAI----TPKTRAIVPVH---YAGV  131 (375)
T ss_pred             -----------------------------------------------CcCHHHHHHhc----CCCCeEEEEeC---CCCC
Confidence                                                           01333333333    44678888654   6899


Q ss_pred             ccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCe-EEEecHHHHHHHHh
Q psy16848        275 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGG-YIVGTKNFIDTIRS  350 (514)
Q Consensus       275 ~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG-~l~~~~~~~~~l~~  350 (514)
                      ..++++|.++|+++|+++|+|++|++|... .+...    +.  -.|+.++||+  |.+++ .|| +++.++++.++++.
T Consensus       132 ~~~~~~i~~la~~~~i~vIeD~a~a~g~~~-~~~~~----g~--~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~  204 (375)
T PRK11706        132 ACEMDTIMALAKKHNLFVVEDAAQGVMSTY-KGRAL----GT--IGHIGCFSFHETKNYTAGEGGALLINDPALIERAEI  204 (375)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECcccccccc-CCeee----ec--CcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHH
Confidence            999999999999999999999999977631 11111    11  1366666777  99965 235 44556788776654


Q ss_pred             hcCc-------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC----Cccc
Q psy16848        351 YAAG-------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG----FPVE  407 (514)
Q Consensus       351 ~~~~-------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~  407 (514)
                      ....                   .+++..++...++.+...++.+     ++..++.+++.+++.+.|....    +.+.
T Consensus       205 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l-----~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~  279 (375)
T PRK11706        205 IREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA-----DRINQRRLALWQRYYDALAPLAEAGRIELP  279 (375)
T ss_pred             HHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCcCCeeecC
Confidence            4311                   1122334556666666666654     3466666777777777776652    2221


Q ss_pred             --cCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC---------------CCC----CCcEEEEEeCCCC
Q psy16848        408 --HTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT---------------VPV----GEEKIRLAPTPFH  462 (514)
Q Consensus       408 --~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~---------------~~~----~~~~iRl~~~~~~  462 (514)
                        .+.    ..++++.+++..+..++.+.|. ++||.++....+.               .+.    ..+.+.+.+....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l  358 (375)
T PRK11706        280 SIPDDCKHNAHMFYIKLRDLEDRSALINFLK-EAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNL  358 (375)
T ss_pred             CCCCCCceeeEEEEEEECCcCCHHHHHHHHH-HCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCC
Confidence              111    2255666765556889999995 9999976322110               000    1356778888889


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy16848        463 TREMIDKFVTDLLAVW  478 (514)
Q Consensus       463 t~e~id~~~~~l~~~l  478 (514)
                      +++|++.+++.+++++
T Consensus       359 ~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        359 TDVEQRTVIDTILEFF  374 (375)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998864

>PLN02509 cystathionine beta-lyase

Probab=99.86  E-value=4.3e-20  Score=190.17  Aligned_cols=284  Identities=17%  Similarity=0.177  Sum_probs=188.4

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +..++++++++++.+.+.+++++||+.|+.+ +..+.+  +||+|+++.+.|.++...+.                    
T Consensus       133 pt~~aLE~~lA~leg~e~ai~~~SG~aAi~~-il~ll~--~GD~VI~~~~~y~~t~~ll~--------------------  189 (464)
T PLN02509        133 PTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIK--NGEEIVAGDDVYGGSDRLLS--------------------  189 (464)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHHHHH-HHHHhC--CCCEEEEcCCchhhHHHHHH--------------------
Confidence            5789999999999999999999999877644 335544  99999999998877642211                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (464)
T PLN02509        190 --------------------------------------------------------------------------------  189 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                              ..+...|++++.++..|.+.+++.+    ++++++|++++|+||+|.+.++++|.++|+++|+++|+|++++
T Consensus       190 --------~~l~~~G~~v~~vd~~d~e~l~~ai----~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a  257 (464)
T PLN02509        190 --------QVVPRSGVVVKRVNTTNLDEVAAAI----GPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIM  257 (464)
T ss_pred             --------HHHHHCCeEEEEeCCCCHHHHHHhC----CcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcc
Confidence                    1122334555555554554444443    4568999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      .+..+..         ...+.|++++|++|++++.    ||+++++ +.+.+.+...+...  +...++..++.+...|+
T Consensus       258 ~~~~~~p---------l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~--g~~l~p~~A~l~lr~L~  326 (464)
T PLN02509        258 SPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE--GSGLAPFDCWLCLRGIK  326 (464)
T ss_pred             ccccCCh---------hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhc--CCCcCHHHHHHHHhhhh
Confidence            6554211         1237899999999999763    4777764 44555444332222  33467788777777777


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-cc-----------------cCCCcEEEEEeCCCccHHHHHHHHHHhC
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-VE-----------------HTPSHIIPIKIGNPALNTKICDMLLKEK  435 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-----------------~~~~~~~~i~l~~~~~~~~~~~~Ll~~~  435 (514)
                      .+     +.++++..++++++.+.|++. .+. +.                 ...++++.|.+.+......|++.| +--
T Consensus       327 tL-----~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l-~l~  400 (464)
T PLN02509        327 TM-----ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT-KYF  400 (464)
T ss_pred             hH-----HHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcC-Ccc
Confidence            55     347788888889999999876 222 10                 113558888885333344555555 222


Q ss_pred             CeEEecccC------CC------C--------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        436 GHYVQPINY------PT------V--------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       436 GI~v~~~~~------~~------~--------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .+.++-|..      |.      .        ...++.||++++.    |+++.+++-|+++++
T Consensus       401 ~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGl----E~~~DLi~Dl~~Al~  460 (464)
T PLN02509        401 SIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFR  460 (464)
T ss_pred             eEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHc
Confidence            222221110      00      0        0125799999994    456666666666554

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=7.9e-20  Score=185.24  Aligned_cols=214  Identities=16%  Similarity=0.132  Sum_probs=158.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+....++++++++.|.+.+++++||++|+..++.++.+  +||+|+++.+.|.+....+..                  
T Consensus        52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~--~Gd~Il~~~~~y~~~~~~~~~------------------  111 (388)
T PRK08861         52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLG--PDDLIVAPHDCYGGTYRLFNT------------------  111 (388)
T ss_pred             CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCchHHHHHHHHH------------------
Confidence            456789999999999999999999999999999988866  999999999988766532210                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (388)
T PRK08861        112 --------------------------------------------------------------------------------  111 (388)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                .....|.++.+++..|.+.+++.+    ++++++|++++|+||+|.++|+++|.++|+++|+++|+|++|
T Consensus       112 ----------~~~~~gi~v~~vd~~d~e~l~~~i----~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~  177 (388)
T PRK08861        112 ----------RANKGDFKVQFVDQSDAAALDAAL----AKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTF  177 (388)
T ss_pred             ----------HHhcCCeEEEEECCCCHHHHHHhc----CcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCc
Confidence                      011123445555544555555444    346899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+...         ..+..++|++++|++|++++.    ||++++ ++++.+.++..+...  +..+++..+..+...|
T Consensus       178 ~~~~~~---------~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~--G~~~~p~~a~l~~rgl  246 (388)
T PRK08861        178 LTPVLQ---------KPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCI--GATGTPFDSYMTLRGI  246 (388)
T ss_pred             cccccC---------CCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhcc--CCCCChHHHHHHHhcC
Confidence            855431         111347899999999999763    487776 456767666544333  4466777777665555


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +-     +.-+.++..+++..+.+.|++.
T Consensus       247 ~T-----l~lR~~~~~~~a~~~a~~L~~~  270 (388)
T PRK08861        247 RT-----LGARMRVHEESAQQILAYLQTQ  270 (388)
T ss_pred             CC-----HHHHHHHHHHHHHHHHHHHHhC
Confidence            43     3346777888888888989876

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=1.5e-19  Score=184.77  Aligned_cols=214  Identities=19%  Similarity=0.142  Sum_probs=157.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..++++++++++.|.+.+++++||++|+..++.++.+  +||+|+++.+.|......++                   
T Consensus        59 ~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all~--pGD~Vvv~~p~Y~~t~~~~~-------------------  117 (405)
T PRK08776         59 NPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQ--PGDTLVVPHDAYGGSWRLFN-------------------  117 (405)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHhC--CCCEEEEccCCchHHHHHHH-------------------
Confidence            456789999999999999999999999988888888865  99999999998877542211                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (405)
T PRK08776        118 --------------------------------------------------------------------------------  117 (405)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.+++.++..|.+.+++.++    +++++|++++|+||+|.+.++++|.++|+++|+++|+|++|
T Consensus       118 ---------~~~~~~g~~v~~v~~~d~~~l~~~i~----~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~  184 (405)
T PRK08776        118 ---------ALAKKGHFALITADLTDPRSLADALA----QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTF  184 (405)
T ss_pred             ---------HHHHhcCcEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCC
Confidence                     01112244455555445555555443    46899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+..      .   .....++|++++|++|.+++.    ||+++. ++++.+.+.......  +...++..+.++...+
T Consensus       185 a~~~~------~---~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~--g~~~s~~~a~l~~~gl  253 (405)
T PRK08776        185 LSPAL------Q---KPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANAL--GLTGSPFDAFLTLRGL  253 (405)
T ss_pred             ccccc------C---CcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhh
Confidence            84321      0   111236899999999999753    377765 567777776544333  2346777777766555


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +.     ++.++++..++...+.+.|++.
T Consensus       254 ~t-----l~~r~~~~~~na~~la~~L~~~  277 (405)
T PRK08776        254 RT-----LDARLRVHQENADAIAALLDGH  277 (405)
T ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHHcC
Confidence            43     3457788888888999988876

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.86  E-value=6.7e-20  Score=184.94  Aligned_cols=214  Identities=12%  Similarity=0.090  Sum_probs=162.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+-...+|++++++-|.+.+++++||+.|+.+++.++.+  +||+|+++...|..+...++                   
T Consensus        61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~--~GD~Vv~~~~~Yg~t~~l~~-------------------  119 (395)
T PRK08114         61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVE--QGDHVLMTGTAYEPTQDFCS-------------------  119 (395)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcC--CCCEEEEeCCCcHHHHHHHH-------------------
Confidence            567889999999999999999999999999988888866  99999999888877764321                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (395)
T PRK08114        120 --------------------------------------------------------------------------------  119 (395)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC--CEEEEec
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDE  296 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g--v~li~De  296 (514)
                               ..+...|.++.+++..|.+.+++.+    .++|++|+++++.||+|.+.|+++|.++|+++|  +++++|.
T Consensus       120 ---------~~l~~~Gi~v~~vd~~d~~~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDn  186 (395)
T PRK08114        120 ---------KILSKLGVTTTWFDPLIGADIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDN  186 (395)
T ss_pred             ---------HHHHhcCcEEEEECCCCHHHHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEEC
Confidence                     1122345566666655655555555    346899999999999999999999999999984  9999999


Q ss_pred             cccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        297 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       297 a~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      +++.+..         ......++|+++.|.+|++++.+    |+++.+++..+.+.......  +..+++..+..+...
T Consensus       187 T~a~p~~---------~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~--G~~~~p~~a~l~~rg  255 (395)
T PRK08114        187 TWAAGVL---------FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLM--GQMVDADTAYMTSRG  255 (395)
T ss_pred             CCccccc---------cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhc--cCCCCHHHHHHHHcC
Confidence            9985542         22234589999999999998754    87777777766665433322  446677777665555


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      |+-     +.-++++..+++..+.+.|++.
T Consensus       256 l~T-----L~lR~~~~~~na~~va~~L~~h  280 (395)
T PRK08114        256 LRT-----LGVRLRQHEESSLKVAEWLAEH  280 (395)
T ss_pred             CCc-----HHHHHHHHHHHHHHHHHHHHcC
Confidence            543     3347788888899999999876

>PLN02368 alanine transaminase

Probab=99.86  E-value=4.6e-20  Score=188.66  Aligned_cols=253  Identities=12%  Similarity=0.033  Sum_probs=173.8

Q ss_pred             cccCcchHHHHHHHHHHhHcCC---CcEEEEecc-ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeecc
Q psy16848         54 NISGNSLFHEKLEEDVAKLHQK---EAGLVFTSC-YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYR  129 (514)
Q Consensus        54 ~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sG-t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~  129 (514)
                      ...|..++.+++.+++.+..|.   +..|++|+| ++++..++.++. ..+||.|+++.++|......++..|.+++.++
T Consensus       105 ~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~  183 (407)
T PLN02368        105 DSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI-RGEKDGVLVPVPQYPLYSATISLLGGTLVPYY  183 (407)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc-CCCCCEEEEeCCCCccHHHHHHHcCCEEEEEe
Confidence            3345556666666666655452   234556665 456777777765 13999999999999999998888888877654


Q ss_pred             CCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHH
Q psy16848        130 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD  209 (514)
Q Consensus       130 ~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~  209 (514)
                      ....                                                            .++             
T Consensus       184 ~~~~------------------------------------------------------------~~~-------------  190 (407)
T PLN02368        184 LEES------------------------------------------------------------ENW-------------  190 (407)
T ss_pred             cccc------------------------------------------------------------cCC-------------
Confidence            3100                                                            000             


Q ss_pred             HHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCccccC---HHHHHHH
Q psy16848        210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP---LKELCEV  284 (514)
Q Consensus       210 ~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~---l~~l~~l  284 (514)
                                                      .-|.+.+++.+.+..  ..+++++++++|+||||.+++   +++|.++
T Consensus       191 --------------------------------~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~  238 (407)
T PLN02368        191 --------------------------------GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKF  238 (407)
T ss_pred             --------------------------------CCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHH
Confidence                                            014556666665321  126899999999999999999   7888999


Q ss_pred             HHHcCCEEEEeccccccccCC--CCCCccccC-CC-----ccCceEEEcCCcccc-cCCC---eEEE---ecHHHHHHHH
Q psy16848        285 SHQHGALTFVDEVHAVGLYGE--HGAGIGERD-GQ-----LHNMDIISGTLGKAF-GNIG---GYIV---GTKNFIDTIR  349 (514)
Q Consensus       285 ~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~-~~-----~~~~di~~~S~sK~l-g~~G---G~l~---~~~~~~~~l~  349 (514)
                      |++|++++|+||+|....++.  ...++.... ..     ..+..+++.||||.+ +.+|   ||++   +++++++.+.
T Consensus       239 a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~  318 (407)
T PLN02368        239 CYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIY  318 (407)
T ss_pred             HHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHH
Confidence            999999999999999544322  121221110 00     123689999999998 6678   9998   4888988887


Q ss_pred             hhcCceEeccCCcHHHHHHHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCCcEEE
Q psy16848        350 SYAAGFIFTTSLPPTVLAGAREAIRILS---------SQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPSHIIP  415 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  415 (514)
                      ... ..  ..+.+.+.+.++.++|+...         .++..++++.++++++.+.+.|+++ |+.+..+.|.|+.
T Consensus       319 ~~~-~~--~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~  391 (407)
T PLN02368        319 KVA-SI--ALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYS  391 (407)
T ss_pred             HHh-cc--cCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEe
Confidence            753 22  23567788888888875211         1122346788899999999999998 8888778877554

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=1.9e-19  Score=182.94  Aligned_cols=287  Identities=11%  Similarity=0.079  Sum_probs=191.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..++++++++++.|.+.+++++||++|+..++.++.+  +||+|+++.+.|.++...+...                 
T Consensus        51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~--~GD~Vl~~~~~y~~~~~~~~~~-----------------  111 (386)
T PRK08045         51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSL-----------------  111 (386)
T ss_pred             CccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHH-----------------
Confidence            356789999999999988889899999999888888866  9999999999998755322110                 


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (386)
T PRK08045        112 --------------------------------------------------------------------------------  111 (386)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                 ....|.++..++..|.+.+++.+    .+++++|++++|+||+|.++|+++|.++|+++|+++|+|++|
T Consensus       112 -----------~~~~gi~v~~vd~~d~e~l~~~l----~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay  176 (386)
T PRK08045        112 -----------AKRGCYRVLFVDQGDEQALRAAL----AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTF  176 (386)
T ss_pred             -----------HhhCCeEEEEeCCCCHHHHHHhc----ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence                       00111233333333444444444    346899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+...         .....++|+++.|++|++++.    ||++++ ++++.+.+.......  +...++..+..+...|
T Consensus       177 ~~~~~~---------~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~--g~~~~p~~~~l~~rgl  245 (386)
T PRK08045        177 LSPALQ---------NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--GVTGGAFDSYLLLRGL  245 (386)
T ss_pred             CccccC---------CchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhh
Confidence            854321         111336799999999999752    277765 577877776544443  4467888887777777


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDMLLK  433 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~Ll~  433 (514)
                      +.     +..++++..+++..+.+.|++. .+..+                  ...++++.|.+.+. .....|++.| +
T Consensus       246 ~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l-~  319 (386)
T PRK08045        246 RT-----LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGL-S  319 (386)
T ss_pred             cc-----HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhc-c
Confidence            64     3457788888889999999876 22110                  11355888888642 2234566655 2


Q ss_pred             hCCeEEecccC------CCC--------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        434 EKGHYVQPINY------PTV--------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       434 ~~GI~v~~~~~------~~~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      --.+.++-|..      |..              ...++.+|+|++..    +.+.+++-|++.++.
T Consensus       320 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~  382 (386)
T PRK08045        320 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRA  382 (386)
T ss_pred             ceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHHH
Confidence            22222221110      000              01257999999954    455555555555544

>PLN03032 serine decarboxylase; Provisional

Probab=99.86  E-value=3.9e-19  Score=178.33  Aligned_cols=318  Identities=14%  Similarity=0.085  Sum_probs=216.9

Q ss_pred             hhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--c--EEEEeccccccccchhhccccCCCceEEe
Q psy16848         32 KGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--A--GLVFTSCYVANDSTLFTLGKMIPGLHYIS  106 (514)
Q Consensus        32 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~--~i~~~sGt~a~~~~l~~l~~~~~gd~v~~  106 (514)
                      +...+++.+.+. .+|..+..+.......++.+++.+++++++|.+  .  .+|+++||++|+.++.+.....++.+|++
T Consensus        37 ~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~  116 (374)
T PLN03032         37 YGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYA  116 (374)
T ss_pred             hHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEe
Confidence            345566666554 344433322222245788889999999999864  2  48888899999988876543235679999


Q ss_pred             cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848        107 DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  186 (514)
Q Consensus       107 ~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (514)
                      ++.+|.++..+++..+..+..++.+.                                                      
T Consensus       117 s~~~H~Sv~kaa~~lg~~~~~V~~d~------------------------------------------------------  142 (374)
T PLN03032        117 SRESHYSVFKAARMYRMEAVKVPTLP------------------------------------------------------  142 (374)
T ss_pred             CCCceeHHHHHHHHcCCCCeEeeeCC------------------------------------------------------
Confidence            99999999999888776544332110                                                      


Q ss_pred             cccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe
Q psy16848        187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE  266 (514)
Q Consensus       187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~  266 (514)
                               .|                                            .-|.+.+++.+.+. +.++.+++++
T Consensus       143 ---------~g--------------------------------------------~id~~~L~~~i~~~-~~~~~lvv~t  168 (374)
T PLN03032        143 ---------SG--------------------------------------------EIDYDDLERALAKN-RDKPAILNVN  168 (374)
T ss_pred             ---------CC--------------------------------------------cCcHHHHHHHHHHc-CCCCEEEEEE
Confidence                     00                                            11556666666543 2246788888


Q ss_pred             cCCCCCccccCHHHHHHHHHHcC-----CEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEE
Q psy16848        267 TVHSMTGAICPLKELCEVSHQHG-----ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIV  339 (514)
Q Consensus       267 ~~~nptG~~~~l~~l~~l~~~~g-----v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~  339 (514)
                      ..+|++|.+.|+++|.++|+++|     +++++|.+++.+..--.. ...... ....+|.++.|.||+++ +.| |+++
T Consensus       169 agtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~-~~~~~~-~~~~vDSis~s~HK~~g~P~g~G~ll  246 (374)
T PLN03032        169 IGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVS-RAPEVT-FRKPIGSVSVSGHKFLGCPMPCGVAL  246 (374)
T ss_pred             ecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccC-CCcccC-CCcCCcEEEECcccccCCCcCeEEEE
Confidence            99999999999999999999997     589999999855431000 000111 12368999999999998 777 8888


Q ss_pred             ecHHHHHHHHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc-cCCCcE
Q psy16848        340 GTKNFIDTIRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE-HTPSHI  413 (514)
Q Consensus       340 ~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~  413 (514)
                      .++..++.+......     .+...+-+......+..+|..+..+++.++.++..++.+++.+.|++.++... .|....
T Consensus       247 ~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~  326 (374)
T PLN03032        247 TRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSST  326 (374)
T ss_pred             EEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceE
Confidence            887776655432211     11122334455667777788777788889999999999999999999887754 455555


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.+.-+..   .    .+  .+|..+..        ..+.+++.+...++++.+|++++.|++
T Consensus       327 V~f~~~~~---~----~~--~~~w~l~~--------~~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        327 VVFERPMD---E----AF--IKKWQLAC--------EGDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             EEEcCCCc---H----hH--hheeeecc--------cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            55554421   1    12  35665542        124899999988999999999988875

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.86  E-value=3.3e-20  Score=187.06  Aligned_cols=283  Identities=13%  Similarity=0.065  Sum_probs=185.7

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+|+++++++.|.+++++++||++|+.+++ .+.+  +||+|+++...|.....-+..                  
T Consensus        53 ~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l-~~l~--~GD~VI~~~~~yg~~~~~~~~------------------  111 (364)
T PRK07269         53 NPTRAKLEETLAAIESADYALATSSGMSAIVLAF-SVFP--VGSKVVAVRDLYGGSFRWFNQ------------------  111 (364)
T ss_pred             CccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHH-HHhC--CCCEEEEecCCcCchHHHHHH------------------
Confidence            3567899999999999999999999999988887 4544  999999987766443311100                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                      ...+                                                                            
T Consensus       112 ~~~~----------------------------------------------------------------------------  115 (364)
T PRK07269        112 QEKE----------------------------------------------------------------------------  115 (364)
T ss_pred             HHhc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                    .+.++.+  ..|.+.+    ++..+++|++|++++|+||+|.+.++++|.++|+++|+++|+|+++
T Consensus       116 --------------~~~~~~~--~~d~~~l----~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~  175 (364)
T PRK07269        116 --------------GRFHFTY--ANTEEEL----IAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTF  175 (364)
T ss_pred             --------------CcEEEEe--cCCHHHH----HHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence                          0000000  1133333    3344567999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+...         ..+..++|++++|++|.+++.    ||++++ ++++.+.++......  +..+++..++.+...|
T Consensus       176 ~~~~~~---------~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~--G~~~s~~~a~l~~~~L  244 (364)
T PRK07269        176 YSPIYQ---------RPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTT--GAVLSPFDSYLLMRGL  244 (364)
T ss_pred             cccccC---------CchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHh--CCCCCHHHHHHHHcCC
Confidence            633221         112347899999999999762    488776 567777776433222  3467888877777777


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-c-ccCCCcEEEEEeCCCccHHHHHHHHH---------HhCCeEEec
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-V-EHTPSHIIPIKIGNPALNTKICDMLL---------KEKGHYVQP  441 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~~~~~i~l~~~~~~~~~~~~Ll---------~~~GI~v~~  441 (514)
                      +.     ++.++++..++...+.+.|++. ++. + .++.++++.|.+.+......|.+.+-         ..+.+.+.|
T Consensus       245 ~t-----L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p  319 (364)
T PRK07269        245 KT-----LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYP  319 (364)
T ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCC
Confidence            64     3457788888999999999886 333 2 25677888988864223334444441         012233333


Q ss_pred             ccCCCC----------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        442 INYPTV----------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       442 ~~~~~~----------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ......          ...++.+|++++..    +.+.+++-|++.+
T Consensus       320 ~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE----~~~dli~dl~~al  362 (364)
T PRK07269        320 TTQTHADIPAEVRHSYGLTDDLLRLSIGIE----DARDLIADLKQAL  362 (364)
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHh
Confidence            221100          01257999999954    4555555555544

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.85  E-value=1.2e-19  Score=199.31  Aligned_cols=308  Identities=14%  Similarity=0.148  Sum_probs=216.7

Q ss_pred             ccCcchHHHHHHHHHHhHcCCCcEEEEeccc----cccccchhhccccCCCc----eEEecCccchhhhhhhhcCCCCee
Q psy16848         55 ISGNSLFHEKLEEDVAKLHQKEAGLVFTSCY----VANDSTLFTLGKMIPGL----HYISDAGNHASMIQGIRNSSAPKI  126 (514)
Q Consensus        55 ~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt----~a~~~~l~~l~~~~~gd----~v~~~~~~h~~~~~~~~~~~~~~~  126 (514)
                      ..|+.+.+.++++++++++|.+.++|.+++|    .++..++.++.+ .+||    +|+++..+|.++...+...|.+++
T Consensus       563 ~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~-~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv  641 (993)
T PLN02414        563 AQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHL-SRGDHHRNVCIIPVSAHGTNPASAAMCGMKIV  641 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHh-ccCCCCCCEEEeCCCcCccCHHHHHHCCCEEE
Confidence            4467788999999999999998888887766    678888888764 2377    999999999998877666666665


Q ss_pred             eccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchh
Q psy16848        127 IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH  206 (514)
Q Consensus       127 ~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~  206 (514)
                      .++.++                                                               .|         
T Consensus       642 ~v~~d~---------------------------------------------------------------~G---------  649 (993)
T PLN02414        642 VVGTDA---------------------------------------------------------------KG---------  649 (993)
T ss_pred             EeccCC---------------------------------------------------------------CC---------
Confidence            544310                                                               00         


Q ss_pred             hHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHH
Q psy16848        207 NMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  286 (514)
Q Consensus       207 ~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~  286 (514)
                                                         .-|++.+++.+++. ++++++|++++++|.+|...|+++|.++|+
T Consensus       650 -----------------------------------~vDle~L~~~i~~~-~~~ta~V~vt~pSn~gg~e~~I~eI~~iah  693 (993)
T PLN02414        650 -----------------------------------NINIEELRKAAEAH-KDNLAALMVTYPSTHGVYEEGIDEICDIIH  693 (993)
T ss_pred             -----------------------------------CcCHHHHHHHHhcc-CCCeEEEEEECCCccccccchHHHHHHHHH
Confidence                                               11556666666432 236899999999999999999999999999


Q ss_pred             HcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-C-----CC-eEEEecHHHHHHHHhhc--C--ce
Q psy16848        287 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-N-----IG-GYIVGTKNFIDTIRSYA--A--GF  355 (514)
Q Consensus       287 ~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~-----~G-G~l~~~~~~~~~l~~~~--~--~~  355 (514)
                      ++|+++++|.++..+..+     +....  ..++|++++|.||+++ +     +| |++++++++...+....  .  .+
T Consensus       694 ~~Galv~vDgAq~~a~~~-----l~~p~--~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~  766 (993)
T PLN02414        694 DNGGQVYMDGANMNAQVG-----LTSPG--FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGI  766 (993)
T ss_pred             HcCCEEEEEecCHHhccC-----cCCcc--ccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCc
Confidence            999999999999865432     11111  4489999999999775 2     23 99999988776654211  0  00


Q ss_pred             E---ec---cC------CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCCcE---EEEEeC
Q psy16848        356 I---FT---TS------LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPSHI---IPIKIG  419 (514)
Q Consensus       356 ~---~~---~~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---~~i~l~  419 (514)
                      .   -+   .+      .+...+.++...+..+..+++.+..++...+.+|+++.|.+. ++.+..+.+++   +.+.+.
T Consensus       767 ~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~  846 (993)
T PLN02414        767 PRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLR  846 (993)
T ss_pred             ccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEecc
Confidence            0   00   11      111233333444444445667777888999999999999874 44444433442   222322


Q ss_pred             ---C--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        420 ---N--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       420 ---~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                         .  +.+..++.++|+ +.||......+   + ..+.+|++++...+++|+|+++++|..+.++...
T Consensus       847 ~l~~~~g~~~~di~krL~-d~Gihapt~~~---p-v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~  910 (993)
T PLN02414        847 PFKNTAGIEPEDVAKRLM-DYGFHAPTMSW---P-VPGTLMIEPTESESKAELDRFCDALISIREEIAD  910 (993)
T ss_pred             ccccccCCCHHHHHHHHH-HcCcEEeeecc---c-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence               1  245688999997 99998754333   2 2678999999999999999999999999887653

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.85  E-value=2.5e-19  Score=187.07  Aligned_cols=296  Identities=18%  Similarity=0.209  Sum_probs=190.0

Q ss_pred             cCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCCh
Q psy16848         56 SGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDV  133 (514)
Q Consensus        56 ~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~  133 (514)
                      .|..+...++.+++++++|.+.  .+++++||+++..++.++. ..+||.|+++++.|.+...+++..            
T Consensus       108 ~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~-~~~g~~Vlv~~~~~~~~~~~~~~~------------  174 (447)
T PRK00451        108 QGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVR-ITKRKKVLVSGAVHPEYREVLKTY------------  174 (447)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHH-hcCCCEEEEeCccCHHHHHHHHHH------------
Confidence            3444555666688899998763  3556666766666666653 238999999999998877554321            


Q ss_pred             HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848        134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  213 (514)
Q Consensus       134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~  213 (514)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (447)
T PRK00451        175 --------------------------------------------------------------------------------  174 (447)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCceeeecchHHHHhhCCCCEEEecCC-ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEE
Q psy16848        214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT  292 (514)
Q Consensus       214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~l  292 (514)
                                      ....|.+++.++.+ + ....+.+++..++++++++++++ |++|.+.|+++|.++|+++|+++
T Consensus       175 ----------------~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~  236 (447)
T PRK00451        175 ----------------LKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALF  236 (447)
T ss_pred             ----------------HHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEE
Confidence                            01123344444421 1 22233444444567899999998 89999999999999999999999


Q ss_pred             EE--eccccccccCCCCCCccccCCCccCceEEEcCCccc-----ccCCC-eEEEecHHHHHHHHhhcC-----------
Q psy16848        293 FV--DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA-----FGNIG-GYIVGTKNFIDTIRSYAA-----------  353 (514)
Q Consensus       293 i~--Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~-----lg~~G-G~l~~~~~~~~~l~~~~~-----------  353 (514)
                      ++  |.+ +.|...        ..+ ..+.|++++|.+|+     ++++| |++++++++++.+.....           
T Consensus       237 iv~~d~~-~~g~~~--------~~~-~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~  306 (447)
T PRK00451        237 IVGVDPV-SLGLLK--------PPG-EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRG  306 (447)
T ss_pred             EEEcChH-HhccCC--------Ccc-cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCee
Confidence            98  433 333321        111 34789999865553     34345 888888888887421100           


Q ss_pred             ---------------ceEeccCCcH-HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCCcE---
Q psy16848        354 ---------------GFIFTTSLPP-TVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPSHI---  413 (514)
Q Consensus       354 ---------------~~~~~~~~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---  413 (514)
                                     ....+...+. ....++..+++.+.+++++++.+++.++++++.+.|+++ ++.+.  .+.+   
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~  384 (447)
T PRK00451        307 FVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNE  384 (447)
T ss_pred             eEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEE
Confidence                           0000111111 121333334555556678899999999999999999988 66664  2232   


Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCeEEe-cccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        414 IPIKIGNPALNTKICDMLLKEKGHYVQ-PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       414 ~~i~l~~~~~~~~~~~~Ll~~~GI~v~-~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.+.++  .+..+++++|. ++||.+. ++.. ..+...+++|++++..+|+++++++++.|++++
T Consensus       385 ~~v~~~--~~~~~~~~~L~-~~gi~~~~~~~~-~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        385 FVVRLP--KPAEEVNEALL-EKGILGGYDLGR-YYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             EEEecC--CCHHHHHHHHH-hcCCCCCccccc-ccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            224443  24678999996 7887642 2222 112224689999998899999999999998764

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.85  E-value=1.3e-19  Score=183.99  Aligned_cols=286  Identities=13%  Similarity=0.102  Sum_probs=189.5

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++++.++++.|.+.+++++||++|+..++.++.+  +||+|+++.+.|.++...+...                 
T Consensus        50 ~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~--~GD~Vl~~~p~y~~~~~~~~~~-----------------  110 (382)
T TIGR02080        50 NPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLG--PDDLLVAPHDCYGGTYRLLNAL-----------------  110 (382)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHH-----------------
Confidence            356789999999999988899899999999999988866  9999999999998765322110                 


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (382)
T TIGR02080       111 --------------------------------------------------------------------------------  110 (382)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                 ....+.++..++..|.+.+++.+    .+++++|++++|+||+|.++++++|.++|+++|+++|+|++|
T Consensus       111 -----------~~~~~~~v~~~d~~d~~~l~~ai----~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~  175 (382)
T TIGR02080       111 -----------AKKGCFRVLFVDQGDEQALRAAL----AQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTF  175 (382)
T ss_pred             -----------HhhcCeEEEEECCCCHHHHHHhc----CcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence                       01112233333333444444444    346899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccC-C---CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-I---GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~---GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+...         .....+.|++++|++|++++ .   +|+++. ++++.+.+.......  +..+++..+..+...+
T Consensus       176 ~~~~~~---------~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~--g~~~sp~~a~l~lr~l  244 (382)
T TIGR02080       176 LSPALQ---------NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNL--GVTGGAFDSYLTLRGL  244 (382)
T ss_pred             cccccC---------CchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHcc--CCCCCHHHHHHHHccc
Confidence            854321         11123679999999999975 2   377765 677888776555443  4467788777766665


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc---c--c-------------cCCCcEEEEEeCCCc-cHHHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFP---V--E-------------HTPSHIIPIKIGNPA-LNTKICDMLLK  433 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~--~-------------~~~~~~~~i~l~~~~-~~~~~~~~Ll~  433 (514)
                      +.+     ..++++..++...+.+.|++. .+.   +  .             ...++++.|.+.+.. ....|.+.| +
T Consensus       245 ~tl-----~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l-~  318 (382)
T TIGR02080       245 RTL-----VARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGL-S  318 (382)
T ss_pred             chH-----HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcC-C
Confidence            533     335667778888888888875 221   0  0             113558899986422 234555555 2


Q ss_pred             hCCeEEecccC------CCC------C--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        434 EKGHYVQPINY------PTV------P--------VGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       434 ~~GI~v~~~~~------~~~------~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      --.+.++-|..      |..      +        ..++.+|+|++.    |+.+.+++-|++.++
T Consensus       319 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~dl~~dl~~al~  380 (382)
T TIGR02080       319 LFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL----EDADDLIADLEQGLR  380 (382)
T ss_pred             cceEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence            22222221110      000      0        124689999995    445555666665554

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK05939 hypothetical protein; Provisional

Probab=99.85  E-value=2.1e-19  Score=183.21  Aligned_cols=243  Identities=13%  Similarity=0.091  Sum_probs=163.0

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++|++++++.|.++++.++||+.|+..++.++.+  +||+|++++..|.+....                     
T Consensus        46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~--~Gd~Vv~~~~~y~~t~~~---------------------  102 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLR--AGDHLVSSQFLFGNTNSL---------------------  102 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcC--CCCEEEECCCccccHHHH---------------------
Confidence            466889999999999999999999999999988888865  999999998887654311                     


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (397)
T PRK05939        103 --------------------------------------------------------------------------------  102 (397)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|++++.++..|.+.+++.+    ++++++|++++++||+|.+.|+++|.++|+++|+++|+|+++
T Consensus       103 --------~~~l~~~G~~v~~v~~~d~e~l~~~l----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~  170 (397)
T PRK05939        103 --------FGTLRGLGVEVTMVDATDVQNVAAAI----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM  170 (397)
T ss_pred             --------HHHHHhcCCEEEEECCCCHHHHHHhC----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence                    11122335555555555555555544    356899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEec-HH--------HHH-------------HHHhhcC
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGT-KN--------FID-------------TIRSYAA  353 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~-~~--------~~~-------------~l~~~~~  353 (514)
                      +.+..         ......++|+++.|++|++++.|   |.++.+ ..        +.+             .+.....
T Consensus       171 a~~~~---------~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (397)
T PRK05939        171 TSPWL---------FRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGL  241 (397)
T ss_pred             ccccc---------cCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHH
Confidence            74321         11223478999999999998766   333332 21        111             1111000


Q ss_pred             ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc---c---------------ccCCCcEE
Q psy16848        354 GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP---V---------------EHTPSHII  414 (514)
Q Consensus       354 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~---------------~~~~~~~~  414 (514)
                       ..++..+++..+..+...++.     +..+.++..++...+.+.|++. .+.   +               ....|.++
T Consensus       242 -~~~G~~~~p~~a~l~~rgl~t-----l~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~  315 (397)
T PRK05939        242 -RDMGATLSSEAAHRIAIGAET-----LALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLL  315 (397)
T ss_pred             -HhcCCCCCHHHHHHHHcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEE
Confidence             011335666666555544443     3346666777888888888876 221   1               01235588


Q ss_pred             EEEeCCCccHHHHHHHH
Q psy16848        415 PIKIGNPALNTKICDML  431 (514)
Q Consensus       415 ~i~l~~~~~~~~~~~~L  431 (514)
                      .|.+.+......|.+.+
T Consensus       316 sf~~~~~~~~~~f~~~l  332 (397)
T PRK05939        316 SFELADGIDCFDFLNRL  332 (397)
T ss_pred             EEEeCCHHHHHHHHHhC
Confidence            88887543344555554

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.85  E-value=1.2e-18  Score=179.82  Aligned_cols=294  Identities=16%  Similarity=0.159  Sum_probs=200.0

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcc-------ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCC
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLG-------KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHND  132 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~-------~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d  132 (514)
                      ....++++.+++++|.+++++++|||+|+..++.++.       ..+|||.|+++.++|.++..++...|++++.++.+ 
T Consensus        63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd-  141 (438)
T PRK15407         63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE-  141 (438)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC-
Confidence            4578999999999999999999999999999888763       34699999999999999988877777665543221 


Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHH
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  212 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~  212 (514)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (438)
T PRK15407        142 --------------------------------------------------------------------------------  141 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEE
Q psy16848        213 GTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT  292 (514)
Q Consensus       213 ~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~l  292 (514)
                                                   ..++..+.+.+++..++++++|+++++   .|...++++|.++|+++|+++
T Consensus       142 -----------------------------~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~v  189 (438)
T PRK15407        142 -----------------------------LPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWL  189 (438)
T ss_pred             -----------------------------CCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEE
Confidence                                         011222233344444567899998875   577788999999999999999


Q ss_pred             EEeccccccccCCCCCCccccCCCccCceEEEcCCc--cccc-CCCeEEEec-HHHHHHHHhhcC---------------
Q psy16848        293 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFG-NIGGYIVGT-KNFIDTIRSYAA---------------  353 (514)
Q Consensus       293 i~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg-~~GG~l~~~-~~~~~~l~~~~~---------------  353 (514)
                      |+|++|++|..-. ++..    + . --|+.++||+  |.+. +.||+++.+ +++.+.++....               
T Consensus       190 IeDaa~a~G~~~~-g~~~----G-~-~gd~~~fSf~~~k~~~~geGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~  262 (438)
T PRK15407        190 IEDNCDALGSTYD-GRMT----G-T-FGDIATLSFYPAHHITMGEGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTC  262 (438)
T ss_pred             EEECccchhhhcC-Ceee----e-c-cCceEEEeCCCCCCccccCceEEEECCHHHHHHHHHHHHhCccccccccccccc
Confidence            9999999876421 1111    1 1 1266677776  6564 346888775 455544432211               


Q ss_pred             ----------------------ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C-Cccc--
Q psy16848        354 ----------------------GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G-FPVE--  407 (514)
Q Consensus       354 ----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-~~~~--  407 (514)
                                            ..+++..++.+.++.+...|+.++     ++.++.+++.+++.+.|.+. + +.+.  
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~-----~~~~~R~~~a~~y~~~L~~~~~~~~~~~~  337 (438)
T PRK15407        263 GKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLP-----GFIEARKANFAYLKEGLASLEDFLILPEA  337 (438)
T ss_pred             ccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCCCccccCcC
Confidence                                  023345678888888888888663     46777777888888888765 2 2121  


Q ss_pred             cCC--Cc--EEEEEeCC--CccHHHHHHHHHHhCCeEEecccC-C-----C-----------CCC----CCcEEEEEeCC
Q psy16848        408 HTP--SH--IIPIKIGN--PALNTKICDMLLKEKGHYVQPINY-P-----T-----------VPV----GEEKIRLAPTP  460 (514)
Q Consensus       408 ~~~--~~--~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~-~-----~-----------~~~----~~~~iRl~~~~  460 (514)
                      .+.  ..  .+.+.+.+  ..+.+++.+.| +++||.++.... +     .           .|.    ..+.+-+.+..
T Consensus       338 ~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L-~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~  416 (438)
T PRK15407        338 TPNSDPSWFGFPITVKEDAGFTRVELVKYL-EENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYP  416 (438)
T ss_pred             CCCCeeEEEEEEEEECCcCCCCHHHHHHHH-HHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCC
Confidence            111  11  34455543  23578999999 599998763221 0     0           000    13567777888


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~  479 (514)
                      .+|++|+++++++++++++
T Consensus       417 ~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        417 GLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            8899999999999999875

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.85  E-value=1.8e-19  Score=182.87  Aligned_cols=286  Identities=17%  Similarity=0.147  Sum_probs=184.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+|+++++++.|.+++++++||+.|+.+++ .+.+  |||+|+++++.|.+....+.                   
T Consensus        49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l-~~l~--pGd~Vi~~~~~y~~t~~~~~-------------------  106 (380)
T PRK06176         49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVF-SLFQ--SGDHVLLGDDVYGGTFRLFD-------------------  106 (380)
T ss_pred             ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHH-HHcC--CCCEEEEcCCChhHHHHHHH-------------------
Confidence            4568899999999999999999999999887555 4544  99999999988877653221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (380)
T PRK06176        107 --------------------------------------------------------------------------------  106 (380)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.++.+++..|.+.+++.+    ++++++|++++|+||+|.+.++++|.++|+++|+++|+|++|
T Consensus       107 ---------~~~~~~gi~v~~vd~~d~e~l~~ai----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~  173 (380)
T PRK06176        107 ---------KVLVKNGLSCTIIDTSDLSQIKKAI----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTF  173 (380)
T ss_pred             ---------HHHHhcCeEEEEcCCCCHHHHHHhc----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCc
Confidence                     1122234455555555555555544    346899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+....       .  ...+.|++++|++|++++.    ||+++.+ +++.+.+...+...  +...++.........+
T Consensus       174 a~~~~~~-------p--~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~--G~~~~~~~~~l~~~gl  242 (380)
T PRK06176        174 ATPYYQN-------P--LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAI--GGVLGPQDSWLLQRGI  242 (380)
T ss_pred             cccccCC-------c--cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHh--cCCCCHHHHHHHHhcc
Confidence            8543321       1  1347899999999999763    4877764 56666665444332  2234444443333322


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-----c-------------ccCCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-----V-------------EHTPSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-----~-------------~~~~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +     .+..++++..+....+.+.|++. .+.     -             ....++++.|.+.+.....+|++.| +-
T Consensus       243 ~-----tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l-~~  316 (380)
T PRK06176        243 K-----TLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESL-KL  316 (380)
T ss_pred             C-----cHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcC-Cc
Confidence            2     23345566667777777877765 221     0             1113558889886533344555554 22


Q ss_pred             CCeEEecccC------CCC--------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        435 KGHYVQPINY------PTV--------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       435 ~GI~v~~~~~------~~~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..+.++-|..      |..              ...++.+|+|+++    |+++.+++-|++.+++
T Consensus       317 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~Al~~  378 (380)
T PRK06176        317 FILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI----EHEQDLLEDLEQAFAK  378 (380)
T ss_pred             ceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            1222111110      000              0125799999994    4566666666666654

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=2.2e-19  Score=181.36  Aligned_cols=288  Identities=15%  Similarity=0.075  Sum_probs=192.2

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..+.++++++.+-+.+.+++++||+.|+..++.++.+  +||+|+++.+.|.+....+.                  
T Consensus        62 gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~--~GD~Vlv~~~~Y~~~~~l~~------------------  121 (395)
T PRK05967         62 GTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLS--PGDHALIVDSVYYPTRHFCD------------------  121 (395)
T ss_pred             CChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcC--CCCEEEEccCCcHHHHHHHH------------------
Confidence            4577889999999998888899999999999988888866  99999999998887652210                  


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (395)
T PRK05967        122 --------------------------------------------------------------------------------  121 (395)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                ..+...|.++.+++..+.+.    +++...++|++|++++|+||++...++++|.++|+++|+++|+|++
T Consensus       122 ----------~~l~~~Gi~v~~vd~~~~e~----l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t  187 (395)
T PRK05967        122 ----------TMLKRLGVEVEYYDPEIGAG----IAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT  187 (395)
T ss_pred             ----------HHHHhcCeEEEEeCCCCHHH----HHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence                      11223344455554333333    3444456799999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ++.+..         ...+..++|+++.|.+|.+++.|    |+++.++++.+.+.......  +..+++..+..+...+
T Consensus       188 ~a~p~~---------~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~--G~~~~p~da~l~~rgl  256 (395)
T PRK05967        188 WATPLY---------FRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTL--GLCAGPDDTYQILRGL  256 (395)
T ss_pred             ccCcee---------cChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHcCc
Confidence            984332         12224589999999999998744    77777777666665333322  4467777766666555


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc---c---------------ccCCCcEEEEEeCCC-----ccHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFP---V---------------EHTPSHIIPIKIGNP-----ALNTKICD  429 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~---------------~~~~~~~~~i~l~~~-----~~~~~~~~  429 (514)
                      +.+     .-++++..++...+.+.|++. .+.   +               ....++++.|.+...     ....+|.+
T Consensus       257 ~Tl-----~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~  331 (395)
T PRK05967        257 RTM-----GIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLD  331 (395)
T ss_pred             ccH-----HHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHH
Confidence            533     346777788888888888876 221   1               011355888988632     23445555


Q ss_pred             HHHHhCCeEEecccCC------CC--------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        430 MLLKEKGHYVQPINYP------TV--------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       430 ~Ll~~~GI~v~~~~~~------~~--------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      .| +-..+.++-|...      ..        ....+.+|++++..    +.+.+++-|.+.++.
T Consensus       332 ~l-~l~~~~~slG~~~sLi~~~~~~~~~~~~~~~~~~liRlSvGlE----d~~dLi~Dl~~Al~~  391 (395)
T PRK05967        332 AL-EIFGLGYSWGGYESLALHVKLGDRTVAKAPYAGPVIRLQIGLE----DVPDLKADLERGFAA  391 (395)
T ss_pred             hC-CcceEccCCCCcceeeeeCCCChhHhhhccCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence            55 2212221111100      00        01235899999954    455555555555544

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.85  E-value=2.3e-19  Score=184.33  Aligned_cols=287  Identities=21%  Similarity=0.245  Sum_probs=188.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+++++++++.|.+++++++||++|+..++.++.+  +||+|+++.+.|..+...+...                 
T Consensus        57 ~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~--~Gd~Vl~~~~~Y~~t~~~~~~~-----------------  117 (425)
T PRK06084         57 NPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAE--AGDNIVSVAKLYGGTYNLLAHT-----------------  117 (425)
T ss_pred             CchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHHHh-----------------
Confidence            355689999999999999999999999999999988876  9999999988887665332210                 


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (425)
T PRK06084        118 --------------------------------------------------------------------------------  117 (425)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                 +...|.++.+++..|.+.+++.++    +++++|++++|+||+|.++++++|.++|+++|+++|+|+++
T Consensus       118 -----------l~~~gi~v~~~d~~d~e~le~ai~----~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~  182 (425)
T PRK06084        118 -----------LPRIGIETRFAAHDDIAALEALID----ERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTV  182 (425)
T ss_pred             -----------cccceeEEEEECCCCHHHHHHHhc----cCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence                       011233444555556666666654    35889999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHH--HH---HH---------------------
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNF--ID---TI---------------------  348 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~--~~---~l---------------------  348 (514)
                      +.+...         .....++|+++.|++|++++.|    |+++.++.+  .+   .+                     
T Consensus       183 a~~~~~---------~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  253 (425)
T PRK06084        183 ATPVLC---------RPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGP  253 (425)
T ss_pred             cccccC---------ChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcch
Confidence            855431         1113478999999999998654    666643321  00   00                     


Q ss_pred             --------HhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc-------------
Q psy16848        349 --------RSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV-------------  406 (514)
Q Consensus       349 --------~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-------------  406 (514)
                              .....  .++..+++..++.+...|+.+     ..+.++..++...+.+.|++. ++..             
T Consensus       254 ~~~~~~~~~~~~~--~~g~~l~~~~a~l~lrgl~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~  326 (425)
T PRK06084        254 AAFIGRCRVVPLR--NMGAALSPFNAFLILQGLETL-----ALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHE  326 (425)
T ss_pred             HHHHHHHHHHHHH--hcCCCCCHHHHHHHHcCcCcH-----HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHH
Confidence                    00011  124467777777666666543     357778888888899999876 2210             


Q ss_pred             -----ccC-CCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CC------CC--------CCCcEEEEEeC
Q psy16848        407 -----EHT-PSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PT------VP--------VGEEKIRLAPT  459 (514)
Q Consensus       407 -----~~~-~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~------~~--------~~~~~iRl~~~  459 (514)
                           ... .++++.|.+... ....+|.+.| +--.+.++-|..      |.      .+        ..++.+|+|++
T Consensus       327 ~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l-~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svG  405 (425)
T PRK06084        327 LARRYMGGKPASILSFGIKGGQAAGARFIDAL-KLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIG  405 (425)
T ss_pred             HHHHhCCCCcceEEEEEecCCHHHHHHHHHhC-CcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec
Confidence                 011 255888888543 2234555555 222221211110      00      00        12579999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +    ||.+.+++-|++.++.
T Consensus       406 l----Ed~~dLi~dl~~Al~~  422 (425)
T PRK06084        406 I----EHIDDIIADLAQALDA  422 (425)
T ss_pred             c----CCHHHHHHHHHHHHHh
Confidence            5    4556666666666553

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.85  E-value=2.2e-19  Score=184.32  Aligned_cols=289  Identities=17%  Similarity=0.152  Sum_probs=187.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..++++++++++.|.+++++++||+.|+..++.++..  +||+|+++...|.++...+.                   
T Consensus        68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~--~Gd~Vv~~~~~y~~t~~~~~-------------------  126 (436)
T PRK07812         68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAG--AGDHIVSSPRLYGGTYNLFH-------------------  126 (436)
T ss_pred             CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC--CCCEEEEeCCcchHHHHHHH-------------------
Confidence            466789999999999999999999999999999988866  99999999888877653211                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (436)
T PRK07812        127 --------------------------------------------------------------------------------  126 (436)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                               ..+...|.++++++ ..|.+.+++.    .++++++|++++++||+|.+.|+++|.++|+++|+++|+|++
T Consensus       127 ---------~~l~~~Gi~v~~vdd~~d~e~l~~a----i~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t  193 (436)
T PRK07812        127 ---------YTLPKLGIEVSFVEDPDDLDAWRAA----VRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNT  193 (436)
T ss_pred             ---------HHhhcCeEEEEEECCCCCHHHHHHh----CCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence                     01112344555554 2234444433    346789999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHH-----------------------------
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNF-----------------------------  344 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~-----------------------------  344 (514)
                      ++.+...         .....++|+++.|++|++|+.|    |.++....+                             
T Consensus       194 ~a~~~~~---------~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (436)
T PRK07812        194 IATPYLI---------RPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPA  264 (436)
T ss_pred             CcccccC---------CchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhH
Confidence            9854321         1123479999999999998866    444432210                             


Q ss_pred             -HHHHH-hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc--c------------
Q psy16848        345 -IDTIR-SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV--E------------  407 (514)
Q Consensus       345 -~~~l~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~------------  407 (514)
                       +.... ......  +..+++..+..+...|+.     +..+.++..+++..+.+.|++. ++..  .            
T Consensus       265 ~~~~~~~~~~~~~--G~~l~p~~a~l~~rgl~t-----L~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~  337 (436)
T PRK07812        265 YALKARVQLLRDL--GSAISPFNAFLIAQGLET-----LSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERA  337 (436)
T ss_pred             HHHHHHHHHHHhc--CCCCCHHHHHHHhcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence             00111 011111  345667666655555543     3457788888888999999886 2210  0            


Q ss_pred             -----cCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CCC--------------CCCCcEEEEEeCCC
Q psy16848        408 -----HTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PTV--------------PVGEEKIRLAPTPF  461 (514)
Q Consensus       408 -----~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~~--------------~~~~~~iRl~~~~~  461 (514)
                           ...|+++.|++... .....|.+.| +--.+.++-|..      |..              ...++.+|+|+++ 
T Consensus       338 ~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l-~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl-  415 (436)
T PRK07812        338 KRLAPKGTGAVLSFELAGGVEAGKAFVNAL-TLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI-  415 (436)
T ss_pred             HHhCcCCCceEEEEEecCCHHHHHHHHHhC-CcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc-
Confidence                 11355888988542 2345566655 222222211110      000              0125689999994 


Q ss_pred             CCHHHHHHHHHHHHHHHHHcC
Q psy16848        462 HTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~~  482 (514)
                         |+.+.+++-|++.++..+
T Consensus       416 ---Ed~~dli~dl~~Al~~~~  433 (436)
T PRK07812        416 ---EGIDDILADLEAGFAAAK  433 (436)
T ss_pred             ---CCHHHHHHHHHHHHHhhh
Confidence               456666666666666543

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.85  E-value=1.6e-18  Score=166.74  Aligned_cols=342  Identities=20%  Similarity=0.210  Sum_probs=232.2

Q ss_pred             eeeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcE-EEEeccccccccch
Q psy16848         19 VTCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAG-LVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~-i~~~sGt~a~~~~l   92 (514)
                      ..|.+ +|-+| ..|.+.++.-..+. +|+.++++.+++.|.   ++......++..++||.+++ +-..||++||++++
T Consensus        27 ~~ieLIASEN~-~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~  105 (413)
T COG0112          27 EHIELIASENF-TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVY  105 (413)
T ss_pred             hceeeeecccc-CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHH
Confidence            34555 44444 45888888887776 788888888888775   33333445778888999986 55789999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++.+  |||+|+--+..|..-+.-....+..-.+                                             
T Consensus       106 ~All~--pGDtimgm~l~~GGHltHg~~v~~sG~~---------------------------------------------  138 (413)
T COG0112         106 LALLQ--PGDTIMGLDLSHGGHLTHGSPVNFSGKL---------------------------------------------  138 (413)
T ss_pred             HHHcC--CCCeEecccCCCCCcccCCCCCCcccee---------------------------------------------
Confidence            99977  9999998777776544211000000000                                             


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCChh
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HNDVN  246 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d~~  246 (514)
                                                                                    -+.+.++      .-|++
T Consensus       139 --------------------------------------------------------------~~~v~Y~vd~et~~IDyD  156 (413)
T COG0112         139 --------------------------------------------------------------FNVVSYGVDPETGLIDYD  156 (413)
T ss_pred             --------------------------------------------------------------EEeEecccccccCccCHH
Confidence                                                                          0122222      12677


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++..++.   ++|+|+.-.-  -.-...|+++++++|++.|.+|++|.+|-.|....   +.  +......+|++++|
T Consensus       157 ~~~k~a~e~---kPK~ii~G~S--aY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~---G~--~p~P~~~AdvVTtT  226 (413)
T COG0112         157 EVEKLAKEV---KPKLIIAGGS--AYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAG---GV--HPNPLPHADVVTTT  226 (413)
T ss_pred             HHHHHHHHh---CCCEEEECcc--ccccccCHHHHHHHHHHhCceEEehHHHHHHHHhc---cc--CCCCCCccceEeCC
Confidence            777777765   4677775432  22356679999999999999999999999776521   11  11113358999999


Q ss_pred             Ccccc-cCCCeEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        327 LGKAF-GNIGGYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       327 ~sK~l-g~~GG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      .||++ |+.||++.++. ++.+.+...-.+...+ +.....+++-.-++....+...++..+++.++++.|.+.|.+.|+
T Consensus       227 THKTlrGPrGG~Il~~~eel~kkin~aVFPg~qg-gpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~  305 (413)
T COG0112         227 THKTLRGPRGGIILTNDEELAKKINSAVFPGLQG-GPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGF  305 (413)
T ss_pred             cccCCCCCCceEEEeccHHHHHHhhhhcCCccCC-ChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999 77889998884 8888887644333211 222223333344455444667788899999999999999999999


Q ss_pred             ccccC--CCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCC---CCCcEEEEEeC----CCCCHHHHHHHHHHH
Q psy16848        405 PVEHT--PSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVP---VGEEKIRLAPT----PFHTREMIDKFVTDL  474 (514)
Q Consensus       405 ~~~~~--~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~---~~~~~iRl~~~----~~~t~e~id~~~~~l  474 (514)
                      +++..  ..+++.+.+.+ +....+....| .+.||.+..-.-|+.+   -.++.||+..+    ..+.++|++++.+.|
T Consensus       306 ~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L-~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I  384 (413)
T COG0112         306 KVVSGGTDNHLVLVDLRSKGLTGKKAEAAL-ERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLI  384 (413)
T ss_pred             eEecCCccceEEEEEcccCCCCHHHHHHHH-HHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHH
Confidence            98753  45677777763 23344444444 7999999754444432   23678999765    456688999999999


Q ss_pred             HHHHHHcC
Q psy16848        475 LAVWKSLD  482 (514)
Q Consensus       475 ~~~l~~~~  482 (514)
                      .+++...+
T Consensus       385 ~~vl~~~~  392 (413)
T COG0112         385 ADVLDGLK  392 (413)
T ss_pred             HHHHhccc
Confidence            99988765

>PLN02271 serine hydroxymethyltransferase

Probab=99.85  E-value=9.9e-19  Score=178.67  Aligned_cols=331  Identities=15%  Similarity=0.127  Sum_probs=219.3

Q ss_pred             ChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHH----HHHHHHhHcCCCc----E-EEEeccccccccchhhccccCC
Q psy16848         31 PKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEK----LEEDVAKLHQKEA----G-LVFTSCYVANDSTLFTLGKMIP  100 (514)
Q Consensus        31 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~la~~~~~~~----~-i~~~sGt~a~~~~l~~l~~~~~  100 (514)
                      .|.+.+++...+. +|+.++++.+++.|. +..++    +.++..++|+.++    + +-..||+.||.+++.++.+  |
T Consensus       161 S~av~~algS~ltnkYaEG~pG~Ryy~G~-~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~--P  237 (586)
T PLN02271        161 CRAVMEALGSHLTNKYSEGMPGARYYTGN-QYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLL--P  237 (586)
T ss_pred             CHHHHHHhcCcccccCCCCCCCCcCCCCC-hhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcC--C
Confidence            4777777766665 577777777777665 33344    4466777788665    2 4467999999999999976  9


Q ss_pred             CceEEecCccchhhhhhhhcC--CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCc
Q psy16848        101 GLHYISDAGNHASMIQGIRNS--SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  178 (514)
Q Consensus       101 gd~v~~~~~~h~~~~~~~~~~--~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (514)
                      ||+|+.-+..|...+......  +..                          +.+.|.+                     
T Consensus       238 GD~IL~ldl~~GGHlshg~~~~~g~~--------------------------vs~sG~~---------------------  270 (586)
T PLN02271        238 GDRIMGLDSPSGGHMSHGYYTPGGKK--------------------------VSGASIF---------------------  270 (586)
T ss_pred             CCEEEEecCCCCCchhcccccccccc--------------------------cccccce---------------------
Confidence            999999888777665321100  000                          0000000                     


Q ss_pred             eEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCChhHHHHHH
Q psy16848        179 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HNDVNHLTQVL  252 (514)
Q Consensus       179 ~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d~~~l~~~l  252 (514)
                                                                              .+.++++      ..|++.+++..
T Consensus       271 --------------------------------------------------------~~~vpY~~d~~~g~IDyd~lek~a  294 (586)
T PLN02271        271 --------------------------------------------------------FESLPYKVNPQTGYIDYDKLEEKA  294 (586)
T ss_pred             --------------------------------------------------------EEEEEcccccccCccCHHHHHHHh
Confidence                                                                    0112221      12566666644


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-  331 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-  331 (514)
                      .   ..++|+|++....++  ..+|+++++++|+++|+++++|.+|..|.....-     .......+|++++|.||++ 
T Consensus       295 ~---~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~-----~~sP~~~aDvvt~TTHKtLr  364 (586)
T PLN02271        295 L---DFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKE-----CVNPFDYCDIVTSTTHKSLR  364 (586)
T ss_pred             h---hcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCc-----CCCCCcCCcEEEeCCcccCC
Confidence            3   356899999887777  6788999999999999999999999988763211     1111236899999999999 


Q ss_pred             cCCCeEEEecHH--------------------HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        332 GNIGGYIVGTKN--------------------FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       332 g~~GG~l~~~~~--------------------~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      |+.||+++.+++                    +.+.+.....+. +..+.....+++...++.........+..+++.++
T Consensus       365 GPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPg-lqgGphn~~IAalAvalkea~~~efk~Ya~QVv~N  443 (586)
T PLN02271        365 GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPS-LQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKN  443 (586)
T ss_pred             CCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCc-cccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            777888776643                    444444332221 12222333356666667766555667888999999


Q ss_pred             HHHHHHHHHhCCCccccC--CCcEEEEEeCCCc-cHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeC----CCC
Q psy16848        392 VAYLRNELIQIGFPVEHT--PSHIIPIKIGNPA-LNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPT----PFH  462 (514)
Q Consensus       392 ~~~l~~~L~~~g~~~~~~--~~~~~~i~l~~~~-~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~----~~~  462 (514)
                      .+.|.+.|.+.|++++..  ..+++.+.+.... +.....+.| ++.||.+..-..|..  +..++.+|+...    ..+
T Consensus       444 AkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~L-e~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~  522 (586)
T PLN02271        444 AQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVC-EMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGC  522 (586)
T ss_pred             HHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHH-HHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCC
Confidence            999999999999998743  4567777775432 344444445 789999975443322  223578999765    456


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy16848        463 TREMIDKFVTDLLAVWK  479 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~  479 (514)
                      .++|++++.+.|.++++
T Consensus       523 ~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        523 LESDFETIADFLLRAAQ  539 (586)
T ss_pred             CcHHHHHHHHHHHHHHh
Confidence            67899999999998876

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.84  E-value=3.4e-19  Score=180.10  Aligned_cols=317  Identities=13%  Similarity=0.101  Sum_probs=210.6

Q ss_pred             CCChhHHHHHHHHHHHhCCCCCCcCcccC-----cchHHHHHHHHHHhHcCCC---cEEEEec-cccccccchhhccc-c
Q psy16848         29 KVPKGGRKCLGEALEKFGTGAGGTRNISG-----NSLFHEKLEEDVAKLHQKE---AGLVFTS-CYVANDSTLFTLGK-M   98 (514)
Q Consensus        29 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~---~~i~~~s-Gt~a~~~~l~~l~~-~   98 (514)
                      ..++.|.+++.+.+..++ +.++..+..+     ..+.++++++.++++++.+   .++|+++ ||+++..++..+.. .
T Consensus         9 ~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~   87 (355)
T cd00611           9 ALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDK   87 (355)
T ss_pred             CCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCC
Confidence            347899999999998776 4443322222     1367889999999999952   3566655 88888888888752 2


Q ss_pred             CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCc
Q psy16848         99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  178 (514)
Q Consensus        99 ~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (514)
                      .++|+|++....|.+. +-.+..|.++..++..+                                              
T Consensus        88 ~~~~~i~~g~~~~~~~-~~a~~~g~~~~~~~~~~----------------------------------------------  120 (355)
T cd00611          88 GTADYVVTGAWSAKAA-KEAKRYGGVVVIVAAKE----------------------------------------------  120 (355)
T ss_pred             CeEEEEECCHHHHHHH-HHHHhcCCCcEEEeccc----------------------------------------------
Confidence            4677887755554442 11222233322221100                                              


Q ss_pred             eEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC
Q psy16848        179 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK  258 (514)
Q Consensus       179 ~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~  258 (514)
                                                                                     ..++....+......++
T Consensus       121 ---------------------------------------------------------------~g~~~~~~~~~~~~~~~  137 (355)
T cd00611         121 ---------------------------------------------------------------EGKYTKIPDVETWDLAP  137 (355)
T ss_pred             ---------------------------------------------------------------ccCCCCCCCHhhcCCCC
Confidence                                                                           00010111111112346


Q ss_pred             CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eE
Q psy16848        259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GY  337 (514)
Q Consensus       259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~  337 (514)
                      ++++|.+++..|.||...+     ++++.||+++++|.++++|..        +.+..  ..++++.|.+|.+|++| |+
T Consensus       138 ~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~--------~idv~--~~~~~~ss~~K~lGP~G~g~  202 (355)
T cd00611         138 DAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSR--------PIDVS--KFGVIYAGAQKNLGPAGVTV  202 (355)
T ss_pred             CCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCC--------CCCHH--HhCEEEeecccccCCCceEE
Confidence            7899999999999999843     455569999999999998765        22221  23455567999999999 99


Q ss_pred             EEecHHHHHHHHhhcCceE----------eccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16848        338 IVGTKNFIDTIRSYAAGFI----------FTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQI-GFP  405 (514)
Q Consensus       338 l~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~  405 (514)
                      ++.++++++++.+......          ...+.+.....++.++++++.+. +++++.++.+++.+++.+.|+++ |+.
T Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~  282 (355)
T cd00611         203 VIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFY  282 (355)
T ss_pred             EEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            9999998877654321110          01245666788999999999887 79999999999999999999999 752


Q ss_pred             -cc-c--CCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        406 -VE-H--TPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       406 -~~-~--~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                       .. .  .+. .++.+.+++.....++.+.+ .++|+.+.++..     ..+.+|+|+..++|++||++++++|+++
T Consensus       283 ~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~-~r~G~~~~~~~~-----~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         283 RGPVDKRARSRMNVPFRLGKEELEKEFLKEA-EAAGMIGLKGHR-----SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             ccCCCHHHcCceEEEEEcCChhhhHHHHHHH-HHCCCcccCCCc-----ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence             21 1  133 34777776531124554566 489997544432     1358999999999999999999999884

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=2.6e-19  Score=182.80  Aligned_cols=287  Identities=14%  Similarity=0.136  Sum_probs=190.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+||+.++++.|.++++.++||+.|+.+++.++++  +||+|+++.+.|.++...+.                   
T Consensus        60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~--~GD~VI~~~~~Y~~T~~~~~-------------------  118 (432)
T PRK06702         60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICS--SGDHLLCSSTVYGGTFNLFG-------------------  118 (432)
T ss_pred             CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHH-------------------
Confidence            366899999999999999999999999999999988866  99999999999987764311                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (432)
T PRK06702        119 --------------------------------------------------------------------------------  118 (432)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCC-ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                               ..+...|+++.+++.+ |.+.+++    ..+++|++|+++++.||++.+.++++|.++|+++|+++|+|++
T Consensus       119 ---------~~l~~~Gi~v~~vd~~~d~~~l~~----~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T  185 (432)
T PRK06702        119 ---------VSLRKLGIDVTFFNPNLTADEIVA----LANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNT  185 (432)
T ss_pred             ---------HHHHHCCCEEEEECCCCCHHHHHH----hCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECC
Confidence                     1122334555555432 4444433    4456799999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHH----------HH------------------
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKN----------FI------------------  345 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~----------~~------------------  345 (514)
                      ++....         ...+..++||++.|++|.+++.+    |+++....          ++                  
T Consensus       186 ~~tP~~---------~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~  256 (432)
T PRK06702        186 LATPYL---------CQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAA  256 (432)
T ss_pred             CCchhh---------CChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchh
Confidence            862221         11224589999999999998744    66553211          11                  


Q ss_pred             ---HHHH-hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc-------------
Q psy16848        346 ---DTIR-SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE-------------  407 (514)
Q Consensus       346 ---~~l~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-------------  407 (514)
                         .... .....+  +..+++..+..+...|+.+     +.+.++..++...+.+.|++. .+..+             
T Consensus       257 ~~~~~~~~~~~~~~--g~~~sp~~a~l~~rgL~Tl-----~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l  329 (432)
T PRK06702        257 AYIVKARVQLLRDY--GNCMSPFNAYISNIGLETL-----HLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSL  329 (432)
T ss_pred             hHHHHHHHHHHHHc--cCCCCHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHH
Confidence               1111 111222  4578888888777777643     346777788888999999876 22211             


Q ss_pred             ------cCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CCC--------------CCCCcEEEEEeCC
Q psy16848        408 ------HTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PTV--------------PVGEEKIRLAPTP  460 (514)
Q Consensus       408 ------~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~~--------------~~~~~~iRl~~~~  460 (514)
                            ...++++.|.+... ....+|++.| +--.+.++-|..      |..              ...++.+|+|++.
T Consensus       330 ~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l-~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl  408 (432)
T PRK06702        330 AQKYLKKGASGVLTFGIKGGLEAAKEFIANV-KLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGI  408 (432)
T ss_pred             HHHhCcCCCceEEEEEecCCHHHHHHHHHhC-ccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEecc
Confidence                  11245888888632 2344555555 222222221110      000              0124689999994


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~  480 (514)
                          |+.|.+++-|++.++-
T Consensus       409 ----Ed~eDLi~Dl~~Al~~  424 (432)
T PRK06702        409 ----EDVSDIIADLEAALVG  424 (432)
T ss_pred             ----CCHHHHHHHHHHHHhc
Confidence                4566666666666553

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=4e-19  Score=182.65  Aligned_cols=289  Identities=18%  Similarity=0.150  Sum_probs=188.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++|++++++.|.+++++++||+.|+..++.++.+  +||+|++++..|.++...+..                  
T Consensus        63 ~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~--~Gd~Vi~~~~~y~~t~~~~~~------------------  122 (433)
T PRK08134         63 NPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMG--AGSHIVASSALYGGSHNLLHY------------------  122 (433)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCccHHHHHHHHH------------------
Confidence            467899999999999999999999999999988888865  999999999999877533211                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (433)
T PRK08134        123 --------------------------------------------------------------------------------  122 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                .+...|+++++++..|.+.+++.+    +++|++|++++++||+|.+.|+++|.++|+++|+++|+|.++
T Consensus       123 ----------~l~~~Gi~v~~vd~~d~~~l~~~i----~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~  188 (433)
T PRK08134        123 ----------TLRRFGIETTFVKPGDIDGWRAAI----RPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTF  188 (433)
T ss_pred             ----------HHhhCCeEEEEECCCCHHHHHHhc----CCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence                      112345566666655555555544    457899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHH------------------------------
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNF------------------------------  344 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~------------------------------  344 (514)
                      +.+...         .....++|+++.|.+|++++.|    |+++....+                              
T Consensus       189 a~~~~~---------~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  259 (433)
T PRK08134        189 TTPYLL---------RPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVA  259 (433)
T ss_pred             cccccC---------CchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchh
Confidence            865431         1123489999999999998766    554432110                              


Q ss_pred             --HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc---c------------
Q psy16848        345 --IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP---V------------  406 (514)
Q Consensus       345 --~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~------------  406 (514)
                        ....+. .....++..+++..++.+...|+.     ++.+.++..++...+.+.|++. ++.   +            
T Consensus       260 ~~~~~~~~-~~~~~~G~~ls~~~A~l~~~gL~t-----l~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~  333 (433)
T PRK08134        260 AFLLRARR-EGLRDFGACLSPMNAWQLLQGIET-----LPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALA  333 (433)
T ss_pred             HHHHHHHH-HHHHhcCCCCCHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence              000000 000111334566666655555543     3457777888888888888875 221   0            


Q ss_pred             ---c-cCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CC------CC--------CCCcEEEEEeCCC
Q psy16848        407 ---E-HTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PT------VP--------VGEEKIRLAPTPF  461 (514)
Q Consensus       407 ---~-~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~------~~--------~~~~~iRl~~~~~  461 (514)
                         . ...++++.|.+... .....|++.| +--.+..+-|..      |.      .+        ..++.||+|+++.
T Consensus       334 ~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l-~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGlE  412 (433)
T PRK08134        334 KRLLPRGAGSVFSFDLKGGRAAGRKFIESL-KLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLE  412 (433)
T ss_pred             HHhCCCCCceEEEEEecCCHHHHHHHHHhC-CcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccC
Confidence               0 12356888998642 3344555555 222222111110      00      00        1257899999954


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                          +.+.+++-|++.+++.
T Consensus       413 ----~~~dli~dl~~Al~~~  428 (433)
T PRK08134        413 ----DADDLIDDLKRALKAA  428 (433)
T ss_pred             ----CHHHHHHHHHHHHHhh
Confidence                4555566666655543

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=3.6e-19  Score=180.65  Aligned_cols=242  Identities=16%  Similarity=0.144  Sum_probs=167.4

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++++.++++.|.+.+++++||+.++..++ .+.+  +||+|+++.+.|.+....+.                   
T Consensus        49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~-~~l~--~Gd~Viv~~~~y~~~~~~~~-------------------  106 (377)
T PRK07671         49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM-MLFS--SGDHVILTDDVYGGTYRVMT-------------------  106 (377)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH-HHhC--CCCEEEECCCccchHHHHHH-------------------
Confidence            4668999999999999999999999988766554 4544  99999999998876542211                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (377)
T PRK07671        107 --------------------------------------------------------------------------------  106 (377)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|+++++++..|.+.+++.+    ++++++|++++|+||+|.+.++++|.++|+++|+++|+|++|
T Consensus       107 ---------~~~~~~G~~v~~v~~~d~~~l~~ai----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~  173 (377)
T PRK07671        107 ---------KVLNRFGIEHTFVDTSNLEEVEEAI----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTF  173 (377)
T ss_pred             ---------HHHhcCCeEEEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence                     1112335556666655555555544    346899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      ..+....       .  ...+.|++++|++|++++.    ||+++. ++++.+.+...+...  +...++..+..+...+
T Consensus       174 ~~~~~~~-------p--~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~--g~~~~~~~a~l~~~~l  242 (377)
T PRK07671        174 MTPYWQS-------P--ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNST--GGILGPQDSWLLLRGL  242 (377)
T ss_pred             CccccCC-------h--hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhh--cCCCCHHHHHHHHcCc
Confidence            7433211       1  1236799999999999753    376665 567777776555433  3345666665555444


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCCccHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNPALNTKICDML  431 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~~~~~~~~~~L  431 (514)
                      +.     +...+++..++...+.+.|++. ++..+                  ...++++.|.+.+......|.+.|
T Consensus       243 ~t-----l~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l  314 (377)
T PRK07671        243 KT-----LGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERL  314 (377)
T ss_pred             Ch-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhC
Confidence            32     3346777788888889988876 22110                  113558889884333344454444

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.84  E-value=3.4e-19  Score=180.43  Aligned_cols=279  Identities=17%  Similarity=0.136  Sum_probs=186.7

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+-..+++++++++. .+++++++||++|+..++.++.+  +||+|+++.+.|......++                   
T Consensus        50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~y~~~~~~~~-------------------  107 (366)
T PRK07582         50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLR--PGDTVVVPADGYYQVRALAR-------------------  107 (366)
T ss_pred             CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcC--CCCEEEEeCCCcHhHHHHHH-------------------
Confidence            355789999999999 67889999999998888888765  99999998888866542211                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (366)
T PRK07582        108 --------------------------------------------------------------------------------  107 (366)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|++++.++..+...       ...++++++++++|+||+|.+.++++|.++|+++|+++|+|++|
T Consensus       108 ---------~~l~~~G~~v~~v~~~~~~~-------~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~  171 (366)
T PRK07582        108 ---------EYLAPLGVTVREAPTAGMAE-------AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT  171 (366)
T ss_pred             ---------HHHhcCeEEEEEECCCChHH-------HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence                     01122345555555332211       11246899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccC-CC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      .... +     ..+.   ..++|++++|++|++++ .|   ||+++ ++++.+.+.......  +..+++..+..+...+
T Consensus       172 ~~~~-~-----~~p~---~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~--g~~~~~~~a~l~~r~l  240 (366)
T PRK07582        172 ATPL-G-----QRPL---ELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLA--GAIPGPFEAWLAHRSL  240 (366)
T ss_pred             CCcc-c-----cCch---hcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHh--CCCCCHHHHHHHHhcc
Confidence            6221 1     1111   23679999999999965 33   88886 477877776554333  3356677766666655


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc-------cC-----------CCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE-------HT-----------PSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-------~~-----------~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +.+     +.+.++..++...+.+.|++. .+..+       .+           .++++.+.+++   ..+..+.+ +.
T Consensus       241 ~tl-----~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~---~~~~~~~~-~~  311 (366)
T PRK07582        241 GTL-----GLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD---AAAAERFV-AA  311 (366)
T ss_pred             ccH-----HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC---HHHHHHHH-Hh
Confidence            533     345677788888899999876 22211       11           35688999863   33444444 45


Q ss_pred             CCeEEecccCCC------------CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        435 KGHYVQPINYPT------------VPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       435 ~GI~v~~~~~~~------------~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      .++.....++-.            ....++.||+|++....++.++.+.++|+
T Consensus       312 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~  364 (366)
T PRK07582        312 SRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD  364 (366)
T ss_pred             CCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence            666543111100            00124689999998776666666666654

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.84  E-value=4.8e-19  Score=180.40  Aligned_cols=207  Identities=16%  Similarity=0.130  Sum_probs=156.2

Q ss_pred             ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-eE
Q psy16848        260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GY  337 (514)
Q Consensus       260 ~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~  337 (514)
                      ++.|.++++.|.||...|+++|.+  +++|+++++|.++++|..        +.+. . +.|++++|.+|++++ +| |+
T Consensus       137 ~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~--------pidv-~-~iD~~~~s~~K~l~~P~G~g~  204 (378)
T PRK03080        137 DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL--------PLDW-S-KLDVYTFSWQKVLGGEGGHGM  204 (378)
T ss_pred             CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccC--------CCCH-H-HCcEEEEehhhhCCCCCceEE
Confidence            456899999999999999999999  889999999999998775        2332 1 379999999999954 78 99


Q ss_pred             EEecHHHHHHHHhhcCce-----------------Ee---c-cCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHH
Q psy16848        338 IVGTKNFIDTIRSYAAGF-----------------IF---T-TSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYL  395 (514)
Q Consensus       338 l~~~~~~~~~l~~~~~~~-----------------~~---~-~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l  395 (514)
                      ++.+++.++.+.....++                 .+   + .+.+.....++.++++++.+. +++++.++.+++.+++
T Consensus       205 l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l  284 (378)
T PRK03080        205 AILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVL  284 (378)
T ss_pred             EEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999988876532110                 00   0 123344556678899988776 7899999999999999


Q ss_pred             HHHHHhCC-Ccccc--C--CC-cEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        396 RNELIQIG-FPVEH--T--PS-HIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       396 ~~~L~~~g-~~~~~--~--~~-~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      .+.|++++ +.+..  +  .+ .++.+.+++.  ....++...++ ++|+.+..+.++.   ..+.+|++++.++|++|+
T Consensus       285 ~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~-~~~i~v~~g~~~~---~~~~vRis~~~~~t~~di  360 (378)
T PRK03080        285 YDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLL-RENGAVDIEPYRD---APNGLRIWCGPTVEPADV  360 (378)
T ss_pred             HHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHH-HcCCeeccccccC---CCCcEEEecCCCCCHHHH
Confidence            99999884 44432  1  23 3677777651  12345677775 6788887654421   246899999999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q psy16848        468 DKFVTDLLAVWKSLD  482 (514)
Q Consensus       468 d~~~~~l~~~l~~~~  482 (514)
                      ++++++|++++++++
T Consensus       361 ~~l~~al~~~~~~~~  375 (378)
T PRK03080        361 EALTPWLDWAFERLK  375 (378)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988764

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=8.5e-19  Score=180.34  Aligned_cols=287  Identities=17%  Similarity=0.184  Sum_probs=188.2

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+....|++.++++.|.+++++++||+.|+..++.++..  +||+|+++.+.|......+                    
T Consensus        63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~--~GD~Vlv~~~~y~~t~~~~--------------------  120 (431)
T PRK08248         63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIAS--AGDEIVSSSSLYGGTYNLF--------------------  120 (431)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEccCchhhHHHHH--------------------
Confidence            456789999999999999999999999999989888866  9999999998887654221                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (431)
T PRK08248        121 --------------------------------------------------------------------------------  120 (431)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|+++++++..|.+.+++.++    +++++|++++++||+|.+.|+++|.++|+++|+++|+|+++
T Consensus       121 --------~~~~~~~Gv~v~~vd~~d~e~l~~ai~----~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~  188 (431)
T PRK08248        121 --------AHTLPKLGITVKFVDPSDPENFEAAIT----DKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF  188 (431)
T ss_pred             --------HHHHHhCCEEEEEECCCCHHHHHHhcC----CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence                    112234456666666656666555553    45899999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHH-----------------------H-----
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFI-----------------------D-----  346 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~-----------------------~-----  346 (514)
                      +.+..      ..+   ...++|+++.|++|++|+.|    |+++.+.+..                       +     
T Consensus       189 a~~~~------~~p---l~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (431)
T PRK08248        189 ASPYL------LRP---IEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEA  259 (431)
T ss_pred             Ccccc------CCh---hHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchh
Confidence            73321      111   24579999999999998766    5455433210                       0     


Q ss_pred             -----HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc--c-----------
Q psy16848        347 -----TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV--E-----------  407 (514)
Q Consensus       347 -----~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~-----------  407 (514)
                           ........  .+..+++..+..+...|+.     ++.+.++..+++..+.+.|++. ++..  .           
T Consensus       260 ~~~~~~~~~~~~~--~G~~l~p~~a~l~~rgl~t-----l~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~  332 (431)
T PRK08248        260 AYITKARVQLLRD--LGAALSPFNSFLLLQGLET-----LHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYEL  332 (431)
T ss_pred             hHHHHHHHHHHHh--cCCCCCHHHHHHHhcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHH
Confidence                 00001111  1345666666655555543     3357788888899999999887 3221  0           


Q ss_pred             ------cCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CCC--------------CCCCcEEEEEeCC
Q psy16848        408 ------HTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PTV--------------PVGEEKIRLAPTP  460 (514)
Q Consensus       408 ------~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~~--------------~~~~~~iRl~~~~  460 (514)
                            ...|+++.|.+.+. .....|++.| +--.+.++-|..      |..              ...++.+|+|+++
T Consensus       333 ~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l-~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl  411 (431)
T PRK08248        333 AKKYLPKGQGAILTFGIKGGVEAGKKLIDSV-KLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGT  411 (431)
T ss_pred             HHHhCcCCCceEEEEEecCCHHHHHHHHHhC-CcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEecc
Confidence                  11255888988543 2344555555 222222221110      100              0125789999995


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~  480 (514)
                          |+.+.+++-|.++++.
T Consensus       412 ----Ed~~dL~~Dl~~Al~~  427 (431)
T PRK08248        412 ----EAIDDILDDLRQAIRQ  427 (431)
T ss_pred             ----CCHHHHHHHHHHHHHh
Confidence                4455556666665554

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=8.7e-19  Score=180.04  Aligned_cols=287  Identities=15%  Similarity=0.147  Sum_probs=188.2

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..+++++.++++.|.+++++++||+.|+.+++.++.+  +||+|+++...|.++...+                   
T Consensus        67 ~~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~--~Gd~VI~~~~~y~~t~~~~-------------------  125 (437)
T PRK05613         67 TNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAG--AGDHIVTSPRLYGGTETLF-------------------  125 (437)
T ss_pred             cChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcC--CCCEEEECCCccHHHHHHH-------------------
Confidence            3577899999999999999999999999998888877755  9999999999998874221                   


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (437)
T PRK05613        126 --------------------------------------------------------------------------------  125 (437)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEec
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE  296 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~De  296 (514)
                               ...+...|.++++++ ..|.+.+++.    .+++|++|+++++.||+|.+.|+++|.++|+++|+++|+|.
T Consensus       126 ---------~~~l~~~Gi~v~~vd~~~d~e~l~~~----l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~  192 (437)
T PRK05613        126 ---------LVTLNRLGIEVTFVENPDDPESWQAA----VQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDN  192 (437)
T ss_pred             ---------HHHHHhcCeEEEEECCCCCHHHHHHh----CCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEEC
Confidence                     112233455666665 3344444443    45568999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHH---------------------------
Q psy16848        297 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFI---------------------------  345 (514)
Q Consensus       297 a~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~---------------------------  345 (514)
                      +++.+..         ......++|++++|++|++++.|    |+++.+.++.                           
T Consensus       193 t~a~g~~---------~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (437)
T PRK05613        193 TIATAAL---------VRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYA  263 (437)
T ss_pred             CCccccc---------cChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCcccccccccc
Confidence            9985542         11123478999999999998753    7666432210                           


Q ss_pred             ---------HHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--------
Q psy16848        346 ---------DTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE--------  407 (514)
Q Consensus       346 ---------~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--------  407 (514)
                               +........  ++..+++..+..+...|+.+     ..+.++..+++..+.+.|++. ++..+        
T Consensus       264 ~~~~~~~~~~~~~~~~~~--~G~~~~p~~a~l~~rgl~TL-----~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~  336 (437)
T PRK05613        264 DLGAPAFGLKARAGLLRD--TGATLSPFNAWVTAQGLDTL-----SLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDS  336 (437)
T ss_pred             ccchHHHHHHHHHHHHHh--cCCCCCHHHHHHHHcccCcH-----HHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCC
Confidence                     000011111  24466777777666655533     346778888899999999886 22100        


Q ss_pred             -----------cCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CCCC--------------CCCcEEE
Q psy16848        408 -----------HTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PTVP--------------VGEEKIR  455 (514)
Q Consensus       408 -----------~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~~~--------------~~~~~iR  455 (514)
                                 ...|+++.|.+... .....|++.| +--.+..+-|..      |...              ..++.||
T Consensus       337 p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l-~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liR  415 (437)
T PRK05613        337 PWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDAL-KLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVR  415 (437)
T ss_pred             ccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhC-CcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEE
Confidence                       01255888988632 3344555555 222222211110      1100              1257899


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        456 LAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       456 l~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +|+++    |+.+.+++-|++.++
T Consensus       416 lsvGl----E~~~dLi~Dl~~Al~  435 (437)
T PRK05613        416 LSVGI----EDIDDIIADLEGGFA  435 (437)
T ss_pred             EEecc----CCHHHHHHHHHHHHh
Confidence            99995    445556666665554

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.83  E-value=2.2e-18  Score=172.98  Aligned_cols=202  Identities=14%  Similarity=0.132  Sum_probs=154.2

Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-e
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-G  336 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G  336 (514)
                      +++++|.+++..|.||...+     ++++.+++++++|.++++|..        +.+..  +.|++++|.+|++|++| |
T Consensus       129 ~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~--------~id~~--~~d~~~~ssqK~lgP~Glg  193 (349)
T TIGR01364       129 EDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSR--------PIDVS--KFGLIYAGAQKNIGPAGLT  193 (349)
T ss_pred             CCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCc--------cCCHH--HccEEEEecccccCCCceE
Confidence            46889999999999999876     677778999999999997764        22221  34699999999999999 9


Q ss_pred             EEEecHHHHHHHHhhcCceE----------eccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhC-CC
Q psy16848        337 YIVGTKNFIDTIRSYAAGFI----------FTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQI-GF  404 (514)
Q Consensus       337 ~l~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~  404 (514)
                      +++.+++.++.+.+....+.          ...+++.....++.++|+++.++ +++++.++.+++.+++.+.|+++ |+
T Consensus       194 ~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl  273 (349)
T TIGR01364       194 VVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGF  273 (349)
T ss_pred             EEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            99999998887644211110          01255677889999999999888 69999999999999999999999 55


Q ss_pred             ccc-c---CCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        405 PVE-H---TPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       405 ~~~-~---~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      ... .   .++ .++.+.+++.....++.+.+ .++|+.+.++..     ..+.+|+|+..++|.|||++++++|+++.+
T Consensus       274 ~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~-~~~Gi~~~~~~~-----~~g~vRvS~~~~nt~edid~l~~al~~~~~  347 (349)
T TIGR01364       274 YRNPVDPRNRSRMNVVFTLGNEELEKRFLKEA-EERGLVSLKGHR-----SVGGMRASIYNAMPLEGVQALVDFMKEFQK  347 (349)
T ss_pred             eccCCCHHHcCCeEEEEecCChhHhHHHHHHH-HHCCCcccCCcc-----ccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence            332 1   133 35667776532235666677 489997665543     135899999999999999999999999765


Q ss_pred             H
Q psy16848        480 S  480 (514)
Q Consensus       480 ~  480 (514)
                      +
T Consensus       348 ~  348 (349)
T TIGR01364       348 K  348 (349)
T ss_pred             h
Confidence            4

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.83  E-value=1.9e-18  Score=174.36  Aligned_cols=201  Identities=12%  Similarity=0.083  Sum_probs=155.2

Q ss_pred             CCceEEEEecCCCCCcccc-CHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        258 KIPKLVAFETVHSMTGAIC-PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~-~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      +++++|.+++..+.||... ++++|      +|+++++|.++++|..        +.+..  +.|++++|.+|++|++| 
T Consensus       140 ~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~--------~idv~--~~d~~~~ssqK~lgP~Gl  203 (360)
T PRK05355        140 DDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSR--------PIDVS--KFGLIYAGAQKNIGPAGL  203 (360)
T ss_pred             CCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCc--------cCCHH--HccEEEEeccccccCCce
Confidence            3578999999999999998 67666      8999999999998764        22221  23699999999999999 


Q ss_pred             eEEEecHHHHHHHHhhcCc----------eEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        336 GYIVGTKNFIDTIRSYAAG----------FIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       336 G~l~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      |+++.++++++.+.+....          ...-.+.|.....++.++|+++.++ +++++.++.+++.+++.+.|+++++
T Consensus       204 g~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~  283 (360)
T PRK05355        204 TIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF  283 (360)
T ss_pred             EEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999998877652110          0011356778889999999999888 7999999999999999999999864


Q ss_pred             c-c-cc--CCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        405 P-V-EH--TPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       405 ~-~-~~--~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      - . ..  .+. .++.+.+++.....++.+.+. ++|+.+.++..     ..+.+|+|+..++|.+||+++++.|+++++
T Consensus       284 ~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~-~~Gi~~~~~~~-----~~g~vRiS~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        284 YRNPVAPEDRSRMNVPFTLADEELDKKFLAEAK-AAGLVGLKGHR-----SVGGMRASIYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             cccCCChhhcCCcEEEEEcCChHHHHHHHHHHH-HCCCcccCCCC-----ccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            2 1 11  133 357788776534456667774 89999854432     236899999999999999999999999876


Q ss_pred             H
Q psy16848        480 S  480 (514)
Q Consensus       480 ~  480 (514)
                      +
T Consensus       358 ~  358 (360)
T PRK05355        358 R  358 (360)
T ss_pred             h
Confidence            4

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.83  E-value=1.7e-18  Score=174.43  Aligned_cols=285  Identities=19%  Similarity=0.204  Sum_probs=191.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+....++++++++.|.+.+++++||..|+..++.++.+  +||+|++....|..+..-++                   
T Consensus        54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~--~Gd~iv~~~~~Y~~t~~~~~-------------------  112 (386)
T PF01053_consen   54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLK--PGDHIVASDDLYGGTYRLLE-------------------  112 (386)
T ss_dssp             -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS---TTBEEEEESSSSHHHHHHHH-------------------
T ss_pred             cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcc--cCCceEecCCccCcchhhhh-------------------
Confidence            577899999999999999999999999999889988877  99999999988877763221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       113 --------------------------------------------------------------------------------  112 (386)
T PF01053_consen  113 --------------------------------------------------------------------------------  112 (386)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC-CEEEEecc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG-ALTFVDEV  297 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g-v~li~Dea  297 (514)
                               ..+...|.++.+++..|.+.+++.+++    ++++|++++|.||+..+.|+++|+++|+++| +++++|+.
T Consensus       113 ---------~~l~~~gv~v~~~d~~d~~~l~~~l~~----~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT  179 (386)
T PF01053_consen  113 ---------ELLPRFGVEVTFVDPTDLEALEAALRP----NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNT  179 (386)
T ss_dssp             ---------HCHHHTTSEEEEESTTSHHHHHHHHCT----TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECT
T ss_pred             ---------hhhcccCcEEEEeCchhHHHHHhhccc----cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecc
Confidence                     123345667777777788888888865    6899999999999999999999999999998 99999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec--HHHHHHHHhhcCceEeccCCcHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT--KNFIDTIRSYAAGFIFTTSLPPTVLAGARE  371 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~  371 (514)
                      .+-+..         ...+..++|+++.|.+|.+++.+    |+++.+  +++.+.++.....+  +..+++..+..+..
T Consensus       180 ~atp~~---------~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~--G~~~~p~da~ll~r  248 (386)
T PF01053_consen  180 FATPYN---------QNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLL--GATLSPFDAWLLLR  248 (386)
T ss_dssp             TTHTTT---------C-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHH--T-B--HHHHHHHHH
T ss_pred             ccceee---------eccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhc--CccchHHHHHHHhc
Confidence            983321         12234579999999999998744    888765  47777776554443  44566766666666


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-cc-----------------cCCCcEEEEEeCCCc-cHHHHHHHH
Q psy16848        372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-VE-----------------HTPSHIIPIKIGNPA-LNTKICDML  431 (514)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-----------------~~~~~~~~i~l~~~~-~~~~~~~~L  431 (514)
                      .++.+     .-+.++..+++..+.+.|++. .+. +.                 ...++++.|.+.+.. ....|.+.|
T Consensus       249 gl~Tl-----~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l  323 (386)
T PF01053_consen  249 GLRTL-----PLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDAL  323 (386)
T ss_dssp             HHTTH-----HHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-
T ss_pred             CCCcH-----HHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhh
Confidence            55533     347788888899999999887 221 10                 123458999998764 455666666


Q ss_pred             HHhCCeEEe----------cccCCC----------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        432 LKEKGHYVQ----------PINYPT----------VPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       432 l~~~GI~v~----------~~~~~~----------~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                       +-..+..+          |.....          ....++.+|+|++.    |+.+.+++-|++++
T Consensus       324 -~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL  385 (386)
T PF01053_consen  324 -KLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQAL  385 (386)
T ss_dssp             -SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHH
T ss_pred             -hhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhc
Confidence             22111111          111000          01125799999994    45666666666654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=1.6e-18  Score=178.51  Aligned_cols=215  Identities=20%  Similarity=0.176  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +...+++++++++.|.+.+++++||++|+.+++.++.+  +||+|+++...|.+....+.                    
T Consensus        63 p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~--pGd~VIv~~~~y~~t~~~~~--------------------  120 (427)
T PRK05994         63 PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQ--PGDEFIAARKLYGGSINQFG--------------------  120 (427)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC--CCCEEEEecCcchhHHHHHH--------------------
Confidence            55789999999999999999999999999999988866  99999999988876542211                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (427)
T PRK05994        121 --------------------------------------------------------------------------------  120 (427)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                              ..+...|.++++++..|.+.+++.+    ++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++
T Consensus       121 --------~~~~~~G~~v~~vd~~d~~~l~~ai----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a  188 (427)
T PRK05994        121 --------HAFKSFGWQVRWADADDPASFERAI----TPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLA  188 (427)
T ss_pred             --------HHHHhcCcEEEEECCCCHHHHHHhc----CcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcc
Confidence                    1122345566666655655555554    3468999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHH-----------------------HHHHHH---
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKN-----------------------FIDTIR---  349 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~-----------------------~~~~l~---  349 (514)
                      .+...         ..+..++|+++.|++|++|+.|    |+++....                       +.+.+.   
T Consensus       189 ~~~~~---------~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  259 (427)
T PRK05994        189 SPYLI---------RPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFA  259 (427)
T ss_pred             ccccC---------CccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhh
Confidence            54321         1123489999999999998744    55553221                       111100   


Q ss_pred             -----hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        350 -----SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       350 -----~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                           ........+..+++..++.+...|+.+     +.+.++..++..++.+.|++.
T Consensus       260 ~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL-----~~r~~~~~~~a~~la~~L~~~  312 (427)
T PRK05994        260 FAIAARVLGLRDLGPAISPFNAFLILTGIETL-----PLRMQRHSDNALAVAEWLKGH  312 (427)
T ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHcCcccH-----HHHHHHHHHHHHHHHHHHHhC
Confidence                 000001113356777777776666544     347777888888889999876

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.82  E-value=8.3e-18  Score=152.96  Aligned_cols=323  Identities=13%  Similarity=0.121  Sum_probs=215.1

Q ss_pred             HHHHHHHHhCCCCCCcCcc------cCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCcc
Q psy16848         37 CLGEALEKFGTGAGGTRNI------SGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGN  110 (514)
Q Consensus        37 a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~  110 (514)
                      +.++++-.||-+++-.-+.      .-..+.+..+-+.+++++|++.+-++++.-++-.+++.++++  +||.|+++.+.
T Consensus        32 eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~--~gd~vV~D~~a  109 (382)
T COG1103          32 EARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCK--EGDWVVVDSLA  109 (382)
T ss_pred             HHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhcc--CCCEEEEcCcc
Confidence            3444455566554432222      122445566667799999999998888888899999999987  99999999999


Q ss_pred             chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        111 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       111 h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+..-|...+|.++..+++.+              .|..                                        
T Consensus       110 HYttyvAAEragl~v~eVp~tg--------------~Pey----------------------------------------  135 (382)
T COG1103         110 HYTTYVAAERAGLNVAEVPNTG--------------YPEY----------------------------------------  135 (382)
T ss_pred             hHHHHHHHHhcCCeEEecCCCC--------------CCce----------------------------------------
Confidence            9999999999999988776521              1110                                        


Q ss_pred             cccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCC
Q psy16848        191 YGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS  270 (514)
Q Consensus       191 ~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~n  270 (514)
                                                                      .+....+....+..++...+.+++.+++++..
T Consensus       136 ------------------------------------------------~i~~e~y~~viee~~~~~g~~~~lallTh~Dg  167 (382)
T COG1103         136 ------------------------------------------------KITPEGYAEVIEEVKDEGGDPPALALLTHVDG  167 (382)
T ss_pred             ------------------------------------------------EecHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence                                                            00011222222223333335588999999999


Q ss_pred             CCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC--eEEEecHHHHHHH
Q psy16848        271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--GYIVGTKNFIDTI  348 (514)
Q Consensus       271 ptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--G~l~~~~~~~~~l  348 (514)
                      ..|.+.+.+.+.++|+++|++++..++|+.|.+        +..+...++|++++|.||++...|  |++..+.+..+.+
T Consensus       168 ~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grm--------pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V  239 (382)
T COG1103         168 EYGNLADAKKVAKICREYGVPLLLNCAYTVGRM--------PVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIV  239 (382)
T ss_pred             CcCCchhhHHHHHHHHHcCCceEeecceeeccc--------cccccccCCCEEEecCccchhccCCeeEEeehhHHHHHH
Confidence            999999999999999999999999999998886        344445689999999999998767  9999999988876


Q ss_pred             HhhcCc-e------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc--CC-CcEEEEE
Q psy16848        349 RSYAAG-F------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH--TP-SHIIPIK  417 (514)
Q Consensus       349 ~~~~~~-~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~-~~~~~i~  417 (514)
                      -+.... +      .++.+.-...+..+.+++-... +.+. ..+.--+..+++.+.|+++ |+...+  |. ..+..++
T Consensus       240 ~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~-eRVk-rWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fe  317 (382)
T COG1103         240 LRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVV-ERVK-RWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFE  317 (382)
T ss_pred             HhhcccccccceeeeecccccCchHHHHHhcCHHHH-HHHH-HHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeec
Confidence            544311 1      1122222222333334433321 1111 1122235667888888888 465542  22 2244455


Q ss_pred             eCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        418 IGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       418 l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .|.-        ...--+++.| +++||.-.      .+....++.+|+- ..+.|+++..++++++++++.
T Consensus       318 tp~f~eIakk~~r~gyFlY~EL-K~RgI~GI------~~G~Tk~~K~svy-Gl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         318 TPVFHEIAKKHKRKGYFLYEEL-KKRGIHGI------QPGQTKYFKLSVY-GLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             CchHHHHHHhCcCCceeeHHHH-HhcCcccc------ccCceeEEEEEee-cCCHHHHHHHHHHHHHHHHhc
Confidence            4421        1122456677 58887632      1233568888885 689999999999999998875

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.82  E-value=2.6e-18  Score=176.90  Aligned_cols=160  Identities=19%  Similarity=0.201  Sum_probs=123.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..++++++++++.|.+++++++||+.|+..++.++.+  +||+|+++.+.|.+....+                    
T Consensus        56 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vl~~~~~y~~t~~~~--------------------  113 (418)
T TIGR01326        56 NPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQ--AGDNIVSSSYLYGGTYNLF--------------------  113 (418)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHH--------------------
Confidence            355789999999999999999999999999999988866  9999999988886654221                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       114 --------------------------------------------------------------------------------  113 (418)
T TIGR01326       114 --------------------------------------------------------------------------------  113 (418)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|+++++++.+|.+.+++.+    ++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|
T Consensus       114 --------~~~~~~~G~~v~~v~~~d~~~l~~~l----~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~  181 (418)
T TIGR01326       114 --------KHTLKRLGIEVRFVDPDDPEEFEKAI----DENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTF  181 (418)
T ss_pred             --------HHHHHHcCcEEEEECCCCHHHHHHhc----CcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence                    11223345566666655555555554    346889999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEec
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGT  341 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~  341 (514)
                      +.+...         .....++|+++.|++|++++.|   |+++.+
T Consensus       182 ~~~~~~---------~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~  218 (418)
T TIGR01326       182 ATPYLC---------RPIDHGADIVVHSATKYIGGHGTAIGGVIVD  218 (418)
T ss_pred             chhhcC---------CchhcCCeEEEECccccccCCccceEEEEEe
Confidence            854321         1113368999999999998866   555553

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.81  E-value=1.6e-17  Score=167.44  Aligned_cols=339  Identities=14%  Similarity=0.121  Sum_probs=215.9

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhh-hhcCCCCeeeccCCChHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQG-IRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~-~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      +-..+||+.+++++|.++++.++|||.|+.++....  ++|||.|  +.++|.....+ +...|+.++....+       
T Consensus        78 ~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~--v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d-------  146 (460)
T PRK13237         78 RNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIA--IKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIID-------  146 (460)
T ss_pred             CcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC--CCCcCEE--CCccchHhhHHHHHhCCcEEEeeecc-------
Confidence            446899999999999999999999999988754433  4599965  77777776655 66666643321100       


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                      +.+                             ..-                             
T Consensus       147 ----------------~a~-----------------------------~~~-----------------------------  152 (460)
T PRK13237        147 ----------------EAH-----------------------------DAQ-----------------------------  152 (460)
T ss_pred             ----------------ccc-----------------------------ccc-----------------------------
Confidence                            000                             000                             


Q ss_pred             ceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEE
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTF  293 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li  293 (514)
                                       ...+.. .-|.+.+++.+++...++++++.++.++|.. |...|   +++|.++|++||+.||
T Consensus       153 -----------------~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi  215 (460)
T PRK13237        153 -----------------SDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVF  215 (460)
T ss_pred             -----------------cCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEE
Confidence                             000000 1266777777765444556667777777776 67764   7999999999999999


Q ss_pred             Eeccccccc---c-----CCCCCCcccc-CCCccCceEEEcCCcccccC-CCeEEEe-cHHHHHHHHhhcCce-Eecc--
Q psy16848        294 VDEVHAVGL---Y-----GEHGAGIGER-DGQLHNMDIISGTLGKAFGN-IGGYIVG-TKNFIDTIRSYAAGF-IFTT--  359 (514)
Q Consensus       294 ~Dea~~~g~---~-----g~~~~~~~~~-~~~~~~~di~~~S~sK~lg~-~GG~l~~-~~~~~~~l~~~~~~~-~~~~--  359 (514)
                      +|.++.++.   .     +..+.++.+. .....-.|.+++|++|.++. .||+++. ++++.++++.....+ +|.+  
T Consensus       216 ~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~eL~~~~r~~~~~~eG~~tyg  295 (460)
T PRK13237        216 FDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDEELFDEAKELVVVYEGMPSYG  295 (460)
T ss_pred             EECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCHHHHHHHHHhccccCCCcCCC
Confidence            999999772   1     1111111100 00012479999999999865 4777765 578888887653222 1111  


Q ss_pred             CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-cEEEEEe-------C-CCccHHHHHHH
Q psy16848        360 SLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS-HIIPIKI-------G-NPALNTKICDM  430 (514)
Q Consensus       360 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~i~l-------~-~~~~~~~~~~~  430 (514)
                      .++.-.+.++...|....+.   ...+...+..++|.+.|.+.|++++.|.+ +-+.+..       + .....+.++..
T Consensus       296 g~~grd~~alAvgl~E~~~~---~y~~~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~  372 (460)
T PRK13237        296 GMAGRDMEAMAIGIEESVQY---EYIEHRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAE  372 (460)
T ss_pred             ChhhhHHHHHHhHHHhhchH---HHHHHHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHH
Confidence            33344555555455543222   35555566778999999999999986654 4333321       2 12346788888


Q ss_pred             HHHhCCeEEecc-cC-----CCCCC----CCcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCccCCcchhhHhHHHHH
Q psy16848        431 LLKEKGHYVQPI-NY-----PTVPV----GEEKIRLAPTP-FHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFI  499 (514)
Q Consensus       431 Ll~~~GI~v~~~-~~-----~~~~~----~~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  499 (514)
                      |+.+.||...-. +.     +....    .-..+|++++. ..|.+.+|..++++..+.++........--.++|++++|
T Consensus       373 ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~g~~~~~ep~~lr~f  452 (460)
T PRK13237        373 LYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHREDIRGLRFVYEPKQLRFF  452 (460)
T ss_pred             HHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhhcCCeEEeecCchhhhh
Confidence            888889887521 11     11111    12689998874 568899999999999999876554433455788889877


Q ss_pred             HHHH
Q psy16848        500 ILFH  503 (514)
Q Consensus       500 ~~~~  503 (514)
                      .+..
T Consensus       453 ~~~~  456 (460)
T PRK13237        453 TARF  456 (460)
T ss_pred             hccc
Confidence            6643

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.81  E-value=2.5e-17  Score=165.67  Aligned_cols=339  Identities=15%  Similarity=0.130  Sum_probs=218.2

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhh-hhcCCCCeeeccCCChHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQG-IRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~-~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      +-..+|++.+++++|.++++.++|||.|...+....  ++|||.|  +.++|.....+ +...|+.++....+...+.  
T Consensus        71 ~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~--l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~--  144 (450)
T TIGR02618        71 RNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIA--IKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDA--  144 (450)
T ss_pred             CcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhC--CCCcCEE--CCceeHHHHHHHHHhCCeEEEeeeccccccc--
Confidence            456899999999999999999999999955544334  4599977  66778666655 6777764443211000000  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                .                                        ...+ ..|                     
T Consensus       145 ----------~----------------------------------------~~~p-~~G---------------------  152 (450)
T TIGR02618       145 ----------Q----------------------------------------LNIP-FKG---------------------  152 (450)
T ss_pred             ----------c----------------------------------------cCCC-CCC---------------------
Confidence                      0                                        0000 000                     


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEE
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFV  294 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~  294 (514)
                                             .-|.+.+++.+.+...++++++.+++++|.. |.++|   ++++.++|++||+.||+
T Consensus       153 -----------------------niD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~  209 (450)
T TIGR02618       153 -----------------------NVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFY  209 (450)
T ss_pred             -----------------------CcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEE
Confidence                                   1267888888876444456778787777754 78866   79999999999999999


Q ss_pred             eccccccc--c------CCCCCCcccc-CCCccCceEEEcCCcccccC-CCeEEE-ecHHHHHHHHhhcCce-Ee-cc-C
Q psy16848        295 DEVHAVGL--Y------GEHGAGIGER-DGQLHNMDIISGTLGKAFGN-IGGYIV-GTKNFIDTIRSYAAGF-IF-TT-S  360 (514)
Q Consensus       295 Dea~~~g~--~------g~~~~~~~~~-~~~~~~~di~~~S~sK~lg~-~GG~l~-~~~~~~~~l~~~~~~~-~~-~~-~  360 (514)
                      |.++.++.  +      |..+.++.+. .......|.+++|.+|..+. .||+++ .++++.++++.....+ ++ +. .
T Consensus       210 DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGg  289 (450)
T TIGR02618       210 DATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGG  289 (450)
T ss_pred             EccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCc
Confidence            99999742  1      1112112100 00122578999999998865 488887 6788988887664332 11 11 2


Q ss_pred             CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCcEEEEEeC--------CCccHHHHHHHH
Q psy16848        361 LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-PSHIIPIKIG--------NPALNTKICDML  431 (514)
Q Consensus       361 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~i~l~--------~~~~~~~~~~~L  431 (514)
                      ++...+.++..+|+...+.   ...++.....++|.+.|.+.|++++.+ .++.+.+...        .....+.++..|
T Consensus       290 la~r~~~ala~gL~e~~~~---~y~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~l  366 (450)
T TIGR02618       290 LAGRDMEAMAIGIREAVDY---EYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASI  366 (450)
T ss_pred             hhhhhHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHH
Confidence            3444445555555543222   244455567889999999999998644 5566655432        123467888888


Q ss_pred             HHhCCeEEecc-cC-----CCCCC----CCcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCccCCcchhhHhHHHHHH
Q psy16848        432 LKEKGHYVQPI-NY-----PTVPV----GEEKIRLAPTP-FHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFII  500 (514)
Q Consensus       432 l~~~GI~v~~~-~~-----~~~~~----~~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  500 (514)
                      +.+.||...-. +.     +....    .-..+|++++. ..|.+.+|..++++..+.++.........-.++|++++|.
T Consensus       367 y~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~g~~~~~ep~~lr~f~  446 (450)
T TIGR02618       367 YVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDDIRGLKMVYEPKQLRFFT  446 (450)
T ss_pred             HHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhhcCceEEeecchhhhhhh
Confidence            88889876531 11     11111    12689998874 5688999999999999998765544334557888898776


Q ss_pred             HH
Q psy16848        501 LF  502 (514)
Q Consensus       501 ~~  502 (514)
                      +.
T Consensus       447 ~~  448 (450)
T TIGR02618       447 AR  448 (450)
T ss_pred             hc
Confidence            53

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.81  E-value=1.3e-17  Score=165.91  Aligned_cols=288  Identities=17%  Similarity=0.153  Sum_probs=199.0

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+....++++++++-|.+.++.++||..|+..++.++.+  +||+|++....|.....-+                    
T Consensus        62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~--~GD~vl~~~~~YG~t~~~~--------------------  119 (396)
T COG0626          62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLK--AGDHVLLPDDLYGGTYRLF--------------------  119 (396)
T ss_pred             CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcC--CCCEEEecCCccchHHHHH--------------------
Confidence            466789999999999999999999999999998888876  9999999888776655211                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (396)
T COG0626         120 --------------------------------------------------------------------------------  119 (396)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|.++.+++..+.+..++.+.+   ++|++|++|+|.||+-.+.|+++|.++|+++|+++|+|+.+
T Consensus       120 --------~~~l~~~gi~~~~~d~~~~~~~~~~~~~---~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTf  188 (396)
T COG0626         120 --------EKILQKFGVEVTFVDPGDDEALEAAIKE---PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTF  188 (396)
T ss_pred             --------HHHHHhcCeEEEEECCCChHHHHHHhcc---cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCc
Confidence                    1222334566666666666555555543   57999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecH-HHHHHHHhhcC-ceEeccCCcHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTK-NFIDTIRSYAA-GFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~-~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~  372 (514)
                      +-+.+         ...+..++||++.|.+|.+++.+    |+++++. ++.+.+..... ..  +..+++..+..+...
T Consensus       189 atP~~---------q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~--G~~l~p~dA~l~lRG  257 (396)
T COG0626         189 ATPVL---------QRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANT--GAVLSPFDAWLLLRG  257 (396)
T ss_pred             ccccc---------cChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhc--CCCCCHHHHHHHHhc
Confidence            84432         22234589999999999999844    8777554 55555432222 22  446777777766666


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-c-cc----------------CCCcEEEEEeCCCccHHHHHHHHHH
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-V-EH----------------TPSHIIPIKIGNPALNTKICDMLLK  433 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~----------------~~~~~~~i~l~~~~~~~~~~~~Ll~  433 (514)
                      ++-+     .-+.++..+++..+.+.|++. .+. + .+                ..|+++.|.+.+.....+|.+.| +
T Consensus       258 lkTL-----~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L-~  331 (396)
T COG0626         258 LRTL-----ALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSL-K  331 (396)
T ss_pred             cchH-----HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhC-C
Confidence            6544     246777788888888888886 221 1 11                14568999988753355566665 2


Q ss_pred             hCCeEEeccc------CCCCC--------------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        434 EKGHYVQPIN------YPTVP--------------VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       434 ~~GI~v~~~~------~~~~~--------------~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      -..+..+-|.      .|..+              ..++.+|++++.    |+++.+++-|++.++.
T Consensus       332 l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~~  394 (396)
T COG0626         332 LFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALAK  394 (396)
T ss_pred             ccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHHh
Confidence            3333332111      11000              136899999995    4455555555555543

>PRK15029 arginine decarboxylase; Provisional

Probab=99.80  E-value=1.1e-17  Score=179.50  Aligned_cols=309  Identities=13%  Similarity=0.081  Sum_probs=202.0

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccc-cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVA-NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a-~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .....+.++.+|+.+|.++.+|.++||++ |.+++.+++.  +||.|+++++.|.|++.++.++|+.++++.+.-     
T Consensus       204 ~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~--~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~-----  276 (755)
T PRK15029        204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSR-----  276 (755)
T ss_pred             CcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHcCCeEEEecccc-----
Confidence            45678999999999999999999998875 8888888876  999999999999999999999999999875420     


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                +                          .+|.            .+.                        
T Consensus       277 ----------~--------------------------~~Gi------------~~~------------------------  284 (755)
T PRK15029        277 ----------N--------------------------RYGI------------IGP------------------------  284 (755)
T ss_pred             ----------c--------------------------ccCC------------ccC------------------------
Confidence                      0                          0000            000                        


Q ss_pred             CceeeecchHHHHhhCCCCEEEec--CCChhHHHHHHhhcc------CCCceEEEEecCCCCCccccCHHHHHHHHHHcC
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMD------VKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  289 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~--~~d~~~l~~~l~~~~------~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g  289 (514)
                                            ++  .-+.+.+++.+++..      .++++++++++| +..|.+.++++|.++|++++
T Consensus       285 ----------------------i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~  341 (755)
T PRK15029        285 ----------------------IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTS  341 (755)
T ss_pred             ----------------------CCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcC
Confidence                                  00  002345555554432      134558888888 46699999999999999999


Q ss_pred             CEEEEecccc-ccccCCCCCCccccCCC-----c-cCce-EEEcCCcccccC--CCeEEEecHH--HH--HHHHhhcCce
Q psy16848        290 ALTFVDEVHA-VGLYGEHGAGIGERDGQ-----L-HNMD-IISGTLGKAFGN--IGGYIVGTKN--FI--DTIRSYAAGF  355 (514)
Q Consensus       290 v~li~Dea~~-~g~~g~~~~~~~~~~~~-----~-~~~d-i~~~S~sK~lg~--~GG~l~~~~~--~~--~~l~~~~~~~  355 (514)
                      ++|++||||+ ...+.+..   .....+     . .++| +++-|.||.+++  .++++....+  .+  +++.....-+
T Consensus       342 ~~llvDEAhGah~~F~~~~---p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~~  418 (755)
T PRK15029        342 DRLHFDEAWYGYARFNPIY---ADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH  418 (755)
T ss_pred             CeEEEECccccccccCccc---cccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHHH
Confidence            9999999998 22222211   111111     1 4688 999999999976  3366654322  12  2332221111


Q ss_pred             EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C-------------------------------
Q psy16848        356 IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G-------------------------------  403 (514)
Q Consensus       356 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-------------------------------  403 (514)
                       .+++++.+.++.+-.+...+......+..++..+....+++.+.++ +                               
T Consensus       419 -qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  497 (755)
T PRK15029        419 -ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFAD  497 (755)
T ss_pred             -cCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccc
Confidence             1456677777777777666643345666777777777777777654 2                               


Q ss_pred             -----------CccccC--C--------------Cc-EEEEEeCC-Ccc---------HHHHHHHHHHhCCeEEecccCC
Q psy16848        404 -----------FPVEHT--P--------------SH-IIPIKIGN-PAL---------NTKICDMLLKEKGHYVQPINYP  445 (514)
Q Consensus       404 -----------~~~~~~--~--------------~~-~~~i~l~~-~~~---------~~~~~~~Ll~~~GI~v~~~~~~  445 (514)
                                 +.+..+  .              .+ -+.+..+. +.+         +..+.+.| +++||.+--    
T Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L-~~~gI~~E~----  572 (755)
T PRK15029        498 APTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL-GRHGIVPTR----  572 (755)
T ss_pred             cchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHH-HHcCCEEEe----
Confidence                       111110  0              00 11222221 112         22677777 699999863    


Q ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        446 TVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       446 ~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                         .+...+-+-++...|++++++++++|.++.+..
T Consensus       573 ---~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~~~~  605 (755)
T PRK15029        573 ---TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY  605 (755)
T ss_pred             ---cCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Confidence               234466677777899999999999999886644

>PRK04311 selenocysteine synthase; Provisional

Probab=99.80  E-value=5.4e-17  Score=167.28  Aligned_cols=325  Identities=15%  Similarity=0.110  Sum_probs=203.3

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcc-cCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNI-SGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~  109 (514)
                      ++++.+++.+.+..|....  ..+. ....+..+.+++.+++++|.+++++++||+.|+..++.++ .  +||+|++++.
T Consensus        99 ~~~v~eav~~~~~~~~~le--~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l-~--~GdeVIvs~~  173 (464)
T PRK04311         99 SEAAIEAVTEAARGYSNLE--YDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLALNAL-A--AGKEVIVSRG  173 (464)
T ss_pred             CHHHHHHHHHHHhcccccc--cchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHh-C--CCCEEEEcch
Confidence            5788888888887654211  1111 1123557899999999999999999999999988888654 3  9999999887


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +|.++-...                                                                       
T Consensus       174 e~~~~ggs~-----------------------------------------------------------------------  182 (464)
T PRK04311        174 ELVEIGGAF-----------------------------------------------------------------------  182 (464)
T ss_pred             hhhhcCcch-----------------------------------------------------------------------
Confidence            664321000                                                                       


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                                                         .....+...|+++++++..+... .+.+++..+++|+++++++++
T Consensus       183 -----------------------------------~i~~~~~~~G~~l~~v~~~~~t~-~~dle~aI~~~TklV~~vh~s  226 (464)
T PRK04311        183 -----------------------------------RIPDVMRQAGARLVEVGTTNRTH-LRDYEQAINENTALLLKVHTS  226 (464)
T ss_pred             -----------------------------------hhHHHHHHCCcEEEEECCCCCCC-HHHHHHhcCccCeEEEEEcCC
Confidence                                               00112234566677776432211 233444446679999999999


Q ss_pred             CC--Cc--cccCHHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccc-c-CCCccCceEEEcCCcccccCC-CeEEEec
Q psy16848        270 SM--TG--AICPLKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGE-R-DGQLHNMDIISGTLGKAFGNI-GGYIVGT  341 (514)
Q Consensus       270 np--tG--~~~~l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~-~-~~~~~~~di~~~S~sK~lg~~-GG~l~~~  341 (514)
                      |+  +|  ...|+++|.++|++||+++++|.+.+ ++-.+..+.+..+ . .....++|++++|.+|++|++ +|+++++
T Consensus       227 N~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~  306 (464)
T PRK04311        227 NYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGK  306 (464)
T ss_pred             CccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEc
Confidence            98  34  56789999999999999999999643 2111111100000 1 112358999999999999754 4999999


Q ss_pred             HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhch-----------HHHHHHHHHHHHHHHHHHHHhC---CC--c
Q psy16848        342 KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE-----------GVELRAKHQDIVAYLRNELIQI---GF--P  405 (514)
Q Consensus       342 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----------~~~~~~~~~~~~~~l~~~L~~~---g~--~  405 (514)
                      +++++.++.....-  ........+++..+++..+....           +....++..++++.+.+.|+..   ++  .
T Consensus       307 ~~li~~l~~~~~~r--~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~  384 (464)
T PRK04311        307 KELIARLKKHPLKR--ALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVE  384 (464)
T ss_pred             HHHHHHHhhchhHH--HHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEE
Confidence            99998776422111  22344555556666665332111           1222366677888888888765   12  2


Q ss_pred             cccC-----CC-------cEEEEEeC-CCccHHHHHHHHHHhCC--eEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        406 VEHT-----PS-------HIIPIKIG-NPALNTKICDMLLKEKG--HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       406 ~~~~-----~~-------~~~~i~l~-~~~~~~~~~~~Ll~~~G--I~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      +...     .|       +-+.+.+. ...+..++.+.|. +..  |+.+        ..++.+.+-+. ...++|.+.+
T Consensus       385 ~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr-~~~~~i~~r--------~~~~~~~ld~r-~~~~~~~~~~  454 (464)
T PRK04311        385 VVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLR-LLPPPVIGR--------IEDGRLLLDLR-TLEEEDEERL  454 (464)
T ss_pred             EEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHh-cCCCCEEEE--------EECCEEEEEeC-cCCHHHHHHH
Confidence            2211     00       12334443 2346788888884 544  4443        12456777775 5678999999


Q ss_pred             HHHHHHHHH
Q psy16848        471 VTDLLAVWK  479 (514)
Q Consensus       471 ~~~l~~~l~  479 (514)
                      ++++++++.
T Consensus       455 ~~~~~~~~~  463 (464)
T PRK04311        455 AAALLEALN  463 (464)
T ss_pred             HHHHHHHhh
Confidence            999998754

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.80  E-value=6e-18  Score=171.01  Aligned_cols=208  Identities=16%  Similarity=0.116  Sum_probs=155.5

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      .+++++|.+++..|.+|...|+++|   ++++|+++++|.++++|..        +.+- + ..|++++|.+|++|++| 
T Consensus       126 ~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~--------~idv-~-~~D~~~~s~~K~lg~~~G  192 (361)
T TIGR01366       126 DPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGL--------PVDI-A-ETDVYYFAPQKNFASDGG  192 (361)
T ss_pred             CCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCC--------CCCH-H-HCCEEEEEchhhcCCCCc
Confidence            4579999999999999999999887   5889999999999998764        2221 2 37999999999998865 


Q ss_pred             -eEEEecHHHHHHHHhhcCc------eE------------e-ccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHH
Q psy16848        336 -GYIVGTKNFIDTIRSYAAG------FI------------F-TTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAY  394 (514)
Q Consensus       336 -G~l~~~~~~~~~l~~~~~~------~~------------~-~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~  394 (514)
                       ++++.++++++.+.....+      +.            . ..+.+.....++.++++++.+. +++.+.++.+++.++
T Consensus       193 l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~  272 (361)
T TIGR01366       193 LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSR  272 (361)
T ss_pred             eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence             5556688888776632111      00            0 1133445556888899988777 588888999999999


Q ss_pred             HHHHHHhCC-Ccccc-C---CCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848        395 LRNELIQIG-FPVEH-T---PSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       395 l~~~L~~~g-~~~~~-~---~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id  468 (514)
                      +.+.+.+.+ +.... .   .... ..+.++++.+..++.+.| +++||.+.++...   .+.+.+|+++..++|.+|++
T Consensus       273 l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L-~~~gI~i~~~~~~---l~~~~vRis~~~~~t~~di~  348 (361)
T TIGR01366       273 LYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDIDAATVAKIL-RANGIVDTEPYRK---LGRNQLRVAMFPAIDPDDVE  348 (361)
T ss_pred             HHHHHHhCCCcccCCCChhhcccceEEEECCCccCHHHHHHHH-HHCCCeeccCccc---cCCCcEEEEcCCCCCHHHHH
Confidence            999999985 44332 1   1222 234455656778888889 5889999765421   23568999999999999999


Q ss_pred             HHHHHHHHHHHHc
Q psy16848        469 KFVTDLLAVWKSL  481 (514)
Q Consensus       469 ~~~~~l~~~l~~~  481 (514)
                      +++++|+++++++
T Consensus       349 ~l~~al~~~~~~~  361 (361)
T TIGR01366       349 ALTECVDWVVERL  361 (361)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988763

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.80  E-value=9.4e-18  Score=171.08  Aligned_cols=304  Identities=17%  Similarity=0.124  Sum_probs=196.3

Q ss_pred             chHHHHHHHHHHhHcCCC---cEEEEeccc-cccccchhhccccC-CCceEEecCccchhhhhhhhcCCCCeeeccCC-C
Q psy16848         59 SLFHEKLEEDVAKLHQKE---AGLVFTSCY-VANDSTLFTLGKMI-PGLHYISDAGNHASMIQGIRNSSAPKIIYRHN-D  132 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~---~~i~~~sGt-~a~~~~l~~l~~~~-~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~-d  132 (514)
                      ..+..++++.+++++|.+   +++++++|| .++.+++.++.... +||.|+++..+|.++..++...|++++.++.. +
T Consensus       104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d  183 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLD  183 (444)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeec
Confidence            466788999999999987   688899999 67777776665222 58999999999999999999999988766520 0


Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHH
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  212 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~  212 (514)
                      .+.                     |                                                       
T Consensus       184 ~~~---------------------~-------------------------------------------------------  187 (444)
T TIGR03531       184 GDE---------------------L-------------------------------------------------------  187 (444)
T ss_pred             CcC---------------------C-------------------------------------------------------
Confidence            000                     0                                                       


Q ss_pred             hhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecC-CCCCccccCHHHHHHHHHHcCCE
Q psy16848        213 GTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV-HSMTGAICPLKELCEVSHQHGAL  291 (514)
Q Consensus       213 ~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~l~~l~~l~~~~gv~  291 (514)
                                                   .-|.+.+++.+.+. ++++.++++.++ .++.|...++++|.++|++||++
T Consensus       188 -----------------------------~iD~e~Le~aIt~~-~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~  237 (444)
T TIGR03531       188 -----------------------------TTDVEDIERAIEEI-GPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIP  237 (444)
T ss_pred             -----------------------------CcCHHHHHHHHHhc-cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCE
Confidence                                         01455555555532 113455555444 35556788899999999999999


Q ss_pred             EEEeccccccccCCCCCCccccCCCcc-CceEEEcCCcccccCCC--eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHH
Q psy16848        292 TFVDEVHAVGLYGEHGAGIGERDGQLH-NMDIISGTLGKAFGNIG--GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLA  367 (514)
Q Consensus       292 li~Dea~~~g~~g~~~~~~~~~~~~~~-~~di~~~S~sK~lg~~G--G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~  367 (514)
                      +|+|++|+.+.....  .... .+... .+|++++|+||++..+|  |+++. ++++++.+.....+.    ..+...+.
T Consensus       238 lIvDaAyg~~~~~~~--~~~~-~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~----~~~s~~~~  310 (444)
T TIGR03531       238 HIVNNAYGLQSNKYM--ELIN-KAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGR----ASASPSLD  310 (444)
T ss_pred             EEEECcCcCcChhhh--hhhh-ccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCC----CCChHHHH
Confidence            999999995432100  0000 11112 36999999999997533  65655 678888777543221    12233444


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC----CCccccCC-CcE-EEEEeC--CCccHHHHHHHHHHhCCeEE
Q psy16848        368 GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTP-SHI-IPIKIG--NPALNTKICDMLLKEKGHYV  439 (514)
Q Consensus       368 a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~~-~~i~l~--~~~~~~~~~~~Ll~~~GI~v  439 (514)
                      +....+. +..++++++.++..++++++.+.|+++    |-.+...+ .++ +.+.+.  .+.+...+...|+ .++|.-
T Consensus       311 ~~~~ll~-~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~-~~~v~g  388 (444)
T TIGR03531       311 VLITLLS-LGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLY-SRRVTG  388 (444)
T ss_pred             HHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHH-hCCCCC
Confidence            4444443 335677888999999999999988775    55555443 332 223333  1245678888886 676632


Q ss_pred             ----eccc-------CC---CCC---CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        440 ----QPIN-------YP---TVP---VGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       440 ----~~~~-------~~---~~~---~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                          .++.       .+   ...   .-..++-++....++++|+|.++++|+++
T Consensus       389 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       389 PRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             ceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence                1222       00   000   00135556666789999999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.80  E-value=7.9e-18  Score=170.08  Aligned_cols=240  Identities=15%  Similarity=0.072  Sum_probs=165.4

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++|++++++.|.++++.++||+.|+.+++.++.+  +||+|+++...|.......                    
T Consensus        63 ~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~--~GD~Vl~~~~~yg~t~~~~--------------------  120 (384)
T PRK06434         63 NPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIK--KGKRILSISDLYGQTFYFF--------------------  120 (384)
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEecCccchHHHHH--------------------
Confidence            577899999999999999999999999999999988866  9999999877665544211                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (384)
T PRK06434        121 --------------------------------------------------------------------------------  120 (384)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|+++++++.++.+.+.  +   ..+++++|+++++.||++.+.|+++|.++|++++  +++|.++
T Consensus       121 --------~~~~~~~Gi~v~fvd~~~~~~~~--l---~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~  185 (384)
T PRK06434        121 --------NKVLKTLGIHVDYIDTDRLNSLD--F---DPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATF  185 (384)
T ss_pred             --------HHHHHhcCcEEEEECCCChhhee--e---cCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCC
Confidence                    11223345556666543322211  1   1236899999999999999999999999999998  4669998


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+..++         .+..+.|++++|.+|.+++.    ||+++. ++++.+.++.....+  +...++..++.+...|
T Consensus       186 ~s~~~~~---------pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~--G~~~~~~~A~l~~~gL  254 (384)
T PRK06434        186 ASPYNQN---------PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTL--GSNPDPIQAYLALRGL  254 (384)
T ss_pred             CCcccCC---------chhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhCC
Confidence            6333211         11347899999999999752    477766 556666665443233  3456776666655555


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc------------ccCCCcEEEEEeCCCccHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV------------EHTPSHIIPIKIGNPALNTKICDML  431 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~------------~~~~~~~~~i~l~~~~~~~~~~~~L  431 (514)
                      +.     ++.+.++..++...+.+.|++. .+.-            ....++++.|.+.+......|.+.|
T Consensus       255 ~t-----L~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l  320 (384)
T PRK06434        255 KT-----LGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSMEDVHKFIRNL  320 (384)
T ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCHHHHHHHHHhC
Confidence            43     3457888888899999999876 2221            1124668999986433344455544

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.79  E-value=1.6e-17  Score=158.23  Aligned_cols=307  Identities=18%  Similarity=0.192  Sum_probs=199.6

Q ss_pred             HHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhh
Q psy16848         40 EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIR  119 (514)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~  119 (514)
                      ++...|+....+.-+..-..+....+|++++.+-|--.++.+.||..|+..++..+++  +||+|+.+..-|.....-  
T Consensus        42 haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~--aGD~iVss~~LYGGT~~l--  117 (426)
T COG2873          42 HAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAG--AGDNIVSSSKLYGGTYNL--  117 (426)
T ss_pred             HHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhcc--CCCeeEeeccccCchHHH--
Confidence            4444555544443333333466789999999998877789999999999999999987  999999877766554421  


Q ss_pred             cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCcee
Q psy16848        120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG  199 (514)
Q Consensus       120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~  199 (514)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (426)
T COG2873         118 --------------------------------------------------------------------------------  117 (426)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHH
Q psy16848        200 ERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  279 (514)
Q Consensus       200 ~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~  279 (514)
                                                +...+...|.++.+++..|.+.+++.++    ++||+|++|+..||.+.+.|++
T Consensus       118 --------------------------f~~tl~~~Gi~v~fvd~~d~~~~~~aI~----~nTkavf~EtigNP~~~v~Die  167 (426)
T COG2873         118 --------------------------FSHTLKRLGIEVRFVDPDDPENFEAAID----ENTKAVFAETIGNPGLDVLDIE  167 (426)
T ss_pred             --------------------------HHHHHHhcCcEEEEeCCCCHHHHHHHhC----cccceEEEEeccCCCccccCHH
Confidence                                      1233456677888888777777766665    5699999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHH-----Hh
Q psy16848        280 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTI-----RS  350 (514)
Q Consensus       280 ~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l-----~~  350 (514)
                      +|.++|+++|+++|+|...+-.++         ...++.++|||+.|.+|++|+.|    |+++-... .+.-     ..
T Consensus       168 ~ia~iAh~~gvpliVDNT~atpyl---------~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~-FDw~~~~rfP~  237 (426)
T COG2873         168 AIAEIAHRHGVPLIVDNTFATPYL---------CRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGK-FDWTANGRFPE  237 (426)
T ss_pred             HHHHHHHHcCCcEEEecCCCccee---------cchhhcCCCEEEEeecccccCCccccceEEEeCCc-cccccCCCCcc
Confidence            999999999999999999985443         12235689999999999999866    65543221 1111     00


Q ss_pred             hc------CceE---------------------eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        351 YA------AGFI---------------------FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       351 ~~------~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      +.      .+..                     ++..++|.........++-     +.-++++..++...+.+.|+.. 
T Consensus       238 ~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlET-----L~LRmerH~~NA~~vA~~L~~Hp  312 (426)
T COG2873         238 FTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLET-----LSLRMERHCENALKVAEFLENHP  312 (426)
T ss_pred             cCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhh-----hHHHHHHHHHhHHHHHHHHhcCC
Confidence            00      0000                     1223444444444444432     2346777788888899999876 


Q ss_pred             CCccc-------------------cCCCcEEEEEeCCC-ccHHHHHHHHH---------HhCCeEEecccCCCC------
Q psy16848        403 GFPVE-------------------HTPSHIIPIKIGNP-ALNTKICDMLL---------KEKGHYVQPINYPTV------  447 (514)
Q Consensus       403 g~~~~-------------------~~~~~~~~i~l~~~-~~~~~~~~~Ll---------~~~GI~v~~~~~~~~------  447 (514)
                      .+.++                   ...+.++.|.+.++ .....+.+.|.         +.+-+.+.|.+.-..      
T Consensus       313 kV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee  392 (426)
T COG2873         313 KVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEE  392 (426)
T ss_pred             CeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHH
Confidence            22211                   01344888888765 22344544441         022244444442110      


Q ss_pred             ----CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        448 ----PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       448 ----~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                          ...+..||+|++.    |+++.++.-|++.++
T Consensus       393 ~~~aGv~~~~IRlSVGI----Ed~~DiiaDl~qAl~  424 (426)
T COG2873         393 QAAAGVTPDLIRLSVGI----EDIDDIIADLEQALE  424 (426)
T ss_pred             HHhcCCCCCcEEEEecc----CCHHHHHHHHHHHHh
Confidence                1136899999993    556666666666554

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.79  E-value=1.3e-18  Score=171.22  Aligned_cols=230  Identities=19%  Similarity=0.210  Sum_probs=158.0

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEecc-ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSC-YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sG-t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ....+++++++++++|.+++++.++| |+++..++.++.+  |||.|+++.+.|.++..+++..|++++.+.....+   
T Consensus        58 ~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~--~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~---  132 (294)
T cd00615          58 TGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCG--PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP---  132 (294)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCC--CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc---
Confidence            46689999999999999988875555 5678888888866  99999999999999999999888877654321000   


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                               ..|+                   
T Consensus       133 ---------------------------------------------------------~~~~-------------------  136 (294)
T cd00615         133 ---------------------------------------------------------YYGI-------------------  136 (294)
T ss_pred             ---------------------------------------------------------ccCc-------------------
Confidence                                                                     0000                   


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                            ....+.+.+++.+++.  +++++++++++ |++|.++|+++|.++|+++|+++|+|++
T Consensus       137 ----------------------~~~i~~~~l~~~l~~~--~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA  191 (294)
T cd00615         137 ----------------------AGGIPPETFKKALIEH--PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEA  191 (294)
T ss_pred             ----------------------CCCCCHHHHHHHHHhC--CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECc
Confidence                                  0012556666666542  35788888887 7899999999999999999999999999


Q ss_pred             ccccc-cCCCCCCccccCCCccCceEEEcCCcccccC-C-CeEEEecHHH--HHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        298 HAVGL-YGEHGAGIGERDGQLHNMDIISGTLGKAFGN-I-GGYIVGTKNF--IDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       298 ~~~g~-~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~-GG~l~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      |+... +...    .+......++|+++.|+||++++ . ||++..+.+.  .+.+......+ .+++.+...++++..+
T Consensus       192 ~~~~~~~~~~----~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~-~ttsps~~~~asl~~a  266 (294)
T cd00615         192 HGAHFRFHPI----LPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLH-QSTSPSYLILASLDVA  266 (294)
T ss_pred             chhhhccCcc----cCcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHH-CCCCcHHHHHHHHHHH
Confidence            98322 1111    11111234789999999999965 2 3555454332  12222211111 1345666777777777


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++.+. ....+..++..++.+++++.+.
T Consensus       267 ~~~~~-~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         267 RAMMA-LEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHHHHHHh
Confidence            77663 3345667778888888888765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.78  E-value=4.7e-17  Score=175.78  Aligned_cols=308  Identities=14%  Similarity=0.143  Sum_probs=201.0

Q ss_pred             ccCcchHHHHHHHHHHhHcCCCcEEEEe-ccccccccchhhccc------cCCCceEEecCccchhhhhhhhcCCCCeee
Q psy16848         55 ISGNSLFHEKLEEDVAKLHQKEAGLVFT-SCYVANDSTLFTLGK------MIPGLHYISDAGNHASMIQGIRNSSAPKII  127 (514)
Q Consensus        55 ~~~~~~~~~~~~~~la~~~~~~~~i~~~-sGt~a~~~~l~~l~~------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~  127 (514)
                      ..|+.+...++++.+++++|.+.+-+.. ||+++..+++.++..      -...+.|+++...|.+....+...|.+++.
T Consensus       538 sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~  617 (954)
T PRK12566        538 AEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVI  617 (954)
T ss_pred             hcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEE
Confidence            4577888999999999999999886554 888888777766542      123578999999997766555555555554


Q ss_pred             ccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhh
Q psy16848        128 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN  207 (514)
Q Consensus       128 ~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~  207 (514)
                      ++.++                                                               .|          
T Consensus       618 Vp~D~---------------------------------------------------------------~G----------  624 (954)
T PRK12566        618 VECDP---------------------------------------------------------------DG----------  624 (954)
T ss_pred             eccCC---------------------------------------------------------------CC----------
Confidence            43310                                                               00          


Q ss_pred             HHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH
Q psy16848        208 MDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  287 (514)
Q Consensus       208 i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~  287 (514)
                                                        .-|.+.+++.+++. .+++++|+++++++-++...++++|.++|++
T Consensus       625 ----------------------------------~iDle~L~a~I~~~-~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~  669 (954)
T PRK12566        625 ----------------------------------NVDLDDLKAKAAAA-GDRLSCLMITYPSTHGVYEEGIREICEVVHQ  669 (954)
T ss_pred             ----------------------------------CcCHHHHHHHhhcc-CCCEEEEEEEecCcCceecchHHHHHHHHHH
Confidence                                              11556666666533 3568889999998887776779999999999


Q ss_pred             cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC------eEEEecHHHHHHHHhhcC----c--
Q psy16848        288 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG------GYIVGTKNFIDTIRSYAA----G--  354 (514)
Q Consensus       288 ~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G------G~l~~~~~~~~~l~~~~~----~--  354 (514)
                      +|+++++|.++..+..+     +....  ..++|++++++||+++. .|      |.+.+.+++.+.+.....    +  
T Consensus       670 ~Galv~vDgA~~~a~~~-----l~~Pg--~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~  742 (954)
T PRK12566        670 HGGQVYMDGANLNAQVG-----LARPA--DIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPD  742 (954)
T ss_pred             cCCEEEEEeeChhhccC-----CCChh--hcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCC
Confidence            99999999999854431     11111  45899999999999863 12      555556655555543210    0  


Q ss_pred             --eEeccCCcHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHhC-CCccccCCCcE---EEEEeC-----CC
Q psy16848        355 --FIFTTSLPPTVLAGAREAIRILSSQE--GVELRAKHQDIVAYLRNELIQI-GFPVEHTPSHI---IPIKIG-----NP  421 (514)
Q Consensus       355 --~~~~~~~~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---~~i~l~-----~~  421 (514)
                        ..-..+.+......+..++.++...+  +.+.......+.+|+.+.|.+. ++.+.+..+.+   +.+.+.     .+
T Consensus       743 ~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~~~g  822 (954)
T PRK12566        743 PNNGAVSAAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTG  822 (954)
T ss_pred             CCCCceeecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccccccC
Confidence              00011122222222333333332222  4444445577899999999774 44442222231   223332     12


Q ss_pred             ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        422 ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       422 ~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+..++.++|+ +.||......++    ..+.+|++++...+++|+|+++++|+.+.++++
T Consensus       823 ~~~~dvakRL~-d~Gihapt~~fP----v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~  878 (954)
T PRK12566        823 ISEEDVAKRLM-DYGFHAPTMSFP----VPGTLMVEPTESESKAELDRFVEAMLSIRAEIG  878 (954)
T ss_pred             CCHHHHHHHHH-HCCcEEeEEeec----cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            45678999997 999987654332    266899999999999999999999999988854

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.77  E-value=6.8e-17  Score=161.41  Aligned_cols=338  Identities=21%  Similarity=0.208  Sum_probs=197.0

Q ss_pred             eeeecc-cCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHH----HHHHHHhHcCCC----cE-EEEeccccc
Q psy16848         19 VTCRLS-SVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEK----LEEDVAKLHQKE----AG-LVFTSCYVA   87 (514)
Q Consensus        19 ~~~d~~-~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~la~~~~~~----~~-i~~~sGt~a   87 (514)
                      ..+.+- |.+| ..|.+.+++...+. +|..++.+.+++.|. +..++    +.+++.++|+.+    ++ +-..||+.|
T Consensus        21 ~~l~LiaSEN~-~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~-~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A   98 (399)
T PF00464_consen   21 STLNLIASENY-MSPAVREALGSDLTNKYAEGYPGKRYYGGC-EYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA   98 (399)
T ss_dssp             HSEE-CTT------HHHHHHHTSGGGGS-TTEETTEESSSST-HHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH
T ss_pred             cCccccCcccc-cCHHHHHHhCCcceeeccccCCCcccccCc-chhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH
Confidence            345553 3333 34777776665554 455555555655554 33444    557788889988    65 446799999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      |++++.++.+  |||+|+.-+..|..-+.--.....+-+     .      ...                          
T Consensus        99 n~av~~aLl~--pGD~Im~l~l~~GGHlshg~~~~~~~~-----~------~~~--------------------------  139 (399)
T PF00464_consen   99 NLAVYMALLK--PGDTIMGLSLPHGGHLSHGSSVNFKKI-----S------ASG--------------------------  139 (399)
T ss_dssp             HHHHHHHHT---TT-EEEEEEGGGT--GGGT-TTSHSBS-----S------HHH--------------------------
T ss_pred             HHHHHHHHHh--hcCcEEecChhhccccccccccccccc-----c------ccc--------------------------
Confidence            9999999987  999999877766544311000000000     0      000                          


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------  241 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------  241 (514)
                                                                                       ..-+.+.++      
T Consensus       140 -----------------------------------------------------------------~~~~~~~y~~d~~~~  154 (399)
T PF00464_consen  140 -----------------------------------------------------------------LYFESVPYPVDPDTG  154 (399)
T ss_dssp             -----------------------------------------------------------------HHSEEEEEEB-TTTS
T ss_pred             -----------------------------------------------------------------ceEEEEeeeeecCCC
Confidence                                                                             000112222      


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      .-|++.+++.+++.   ++++|++..-..|  ..+|+++++++|++.|++|+.|.+|..|.....  -+...   ...+|
T Consensus       155 ~ID~d~l~~~a~~~---kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g--~~~~P---~~~AD  224 (399)
T PF00464_consen  155 LIDYDELEKLAKEH---KPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGG--LFPNP---FPYAD  224 (399)
T ss_dssp             SB-HHHHHHHHHHH-----SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTT--SS--G---CCTSS
T ss_pred             eECHHHHHHHHhhc---CCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehh--eecCc---cccce
Confidence            12677777777765   3678887665433  456799999999999999999999997765211  01111   22589


Q ss_pred             EEEcCCcccc-cCCCeEEEec--------------HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        322 IISGTLGKAF-GNIGGYIVGT--------------KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       322 i~~~S~sK~l-g~~GG~l~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                      ++++|.||++ |+.||+++.+              +++.+.+.....+.. ..+......++...++.........+..+
T Consensus       225 vvt~sThKtl~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~-qg~~h~~~iaalAval~ea~~~~fk~Ya~  303 (399)
T PF00464_consen  225 VVTGSTHKTLRGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGL-QGGPHMHRIAALAVALKEALSPEFKEYAK  303 (399)
T ss_dssp             EEEEESSGGG-SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT--SS--HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             EEEeeccccccccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCc-ccCcchhHHHHHHHHHhcccCHHHHHHHH
Confidence            9999999999 7778999888              788888876544431 11223334444445555544556678899


Q ss_pred             HHHHHHHHHHHHHHhCCCcccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeC--
Q psy16848        387 KHQDIVAYLRNELIQIGFPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPT--  459 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~--  459 (514)
                      ++.++++.|.+.|.+.|+.++.  +..+++.+.+... .+..+..+.| ++.||.+..-..|..  +.....+|+...  
T Consensus       304 qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~L-e~~gI~vnkn~iP~d~~~~~~sGlRlGT~~l  382 (399)
T PF00464_consen  304 QVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKAL-EEAGIIVNKNTIPGDRSPFVPSGLRLGTPAL  382 (399)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHH-HHTTEE-EEE--TTTSTTTT-SEEEEESHHH
T ss_pred             HHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHH-HhcCeeecccccCCCCCCCCCCEEEECCHHH
Confidence            9999999999999999999874  4667888887542 3455666666 799999975444332  123578999875  


Q ss_pred             --CCCCHHHHHHHHHHH
Q psy16848        460 --PFHTREMIDKFVTDL  474 (514)
Q Consensus       460 --~~~t~e~id~~~~~l  474 (514)
                        ..+.++|++++.+.|
T Consensus       383 T~rG~~e~dm~~iA~~I  399 (399)
T PF00464_consen  383 TRRGMKEEDMKEIAELI  399 (399)
T ss_dssp             HHTT--HHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHhhC
Confidence              466778888776654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.77  E-value=2.3e-16  Score=162.21  Aligned_cols=318  Identities=14%  Similarity=0.122  Sum_probs=196.2

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcc-cCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNI-SGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~  109 (514)
                      ++++.+++.+.++.|+...  ..+. ......++.+++.+++++|.+++++++||+.|+..++.++ .  +||+|++++.
T Consensus        94 ~~~vieAv~~~~~~y~~l~--~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l-~--~GdeVIvs~~  168 (454)
T TIGR00474        94 AEEAIEAVTDAARGYSNLE--YDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTL-A--KGKEVIVSRG  168 (454)
T ss_pred             CHHHHHHHHHHHhcccchh--ccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh-C--CcCEEEECCC
Confidence            6889999999998765211  1111 1123567899999999999999999999999988787554 3  9999999988


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      .|...-...                                                                       
T Consensus       169 e~v~~ggs~-----------------------------------------------------------------------  177 (454)
T TIGR00474       169 ELVEIGGSF-----------------------------------------------------------------------  177 (454)
T ss_pred             hhhhhcchh-----------------------------------------------------------------------
Confidence            764321000                                                                       


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                                                         .+...+...|+++++++.++... .+.+.+..+++|+++++++++
T Consensus       178 -----------------------------------~i~~~~~~~G~~~~~v~~~~~~~-l~dle~aI~~~T~lv~~~h~s  221 (454)
T TIGR00474       178 -----------------------------------RIPDVMEQSGAKLVEVGTTNRTH-LKDYEDAITENTALLLKVHTS  221 (454)
T ss_pred             -----------------------------------hHHHHHHHcCCEEEEeCCCCCCC-HHHHHHhcCcCCEEEEEEccC
Confidence                                               00112234466666666422211 223333445679999999999


Q ss_pred             CCC--c--cccCHHHHHHHHHHcCCEEEEeccccccccCCCC---CCccc--cCCCccCceEEEcCCcccccCC-CeEEE
Q psy16848        270 SMT--G--AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHG---AGIGE--RDGQLHNMDIISGTLGKAFGNI-GGYIV  339 (514)
Q Consensus       270 npt--G--~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~---~~~~~--~~~~~~~~di~~~S~sK~lg~~-GG~l~  339 (514)
                      |++  |  ...|+++|.++|++||+++++|.+.+  .++..+   .+..+  ......++|++++|.+|++|++ ||+++
T Consensus       222 N~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG--~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~  299 (454)
T TIGR00474       222 NYRIVGFTEEVSIAELVALGREHGLPVMEDLGSG--SLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIV  299 (454)
T ss_pred             cccccCCCCCCCHHHHHHHHHHcCCeEEEECCCc--ccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEE
Confidence            984  6  57899999999999999999997533  322211   00001  1112458999999999999654 59999


Q ss_pred             ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhch-----------HHHHHHHHHHHHHHHHHHHHhC---CC-
Q psy16848        340 GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE-----------GVELRAKHQDIVAYLRNELIQI---GF-  404 (514)
Q Consensus       340 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----------~~~~~~~~~~~~~~l~~~L~~~---g~-  404 (514)
                      +++++++.++.....-  .....-..+++..+++..+....           +....++..++++.+.+.|++.   ++ 
T Consensus       300 g~~~~i~~l~~~~l~r--~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~  377 (454)
T TIGR00474       300 GKKELIERLKKNPLTR--ALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFE  377 (454)
T ss_pred             ECHHHHHhhhhchhHH--HHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCce
Confidence            9999888765432111  11333344445555555432211           1122346667777788888663   22 


Q ss_pred             -ccccCC-----C-------cEEEEEeC-CCccHHHHHHHHHHhCC--eEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848        405 -PVEHTP-----S-------HIIPIKIG-NPALNTKICDMLLKEKG--HYVQPINYPTVPVGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       405 -~~~~~~-----~-------~~~~i~l~-~~~~~~~~~~~Ll~~~G--I~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id  468 (514)
                       .+....     |       +-+.+.+. ...+..++.+.|. +..  |+.+        ..++.+.+-+. ...++|.+
T Consensus       378 ~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr-~~~~~ii~r--------~~~~~~~ld~r-~~~~~~~~  447 (454)
T TIGR00474       378 LEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLR-ELPPPIIGR--------IEDDRFLLDLR-TLLEDEEE  447 (454)
T ss_pred             EEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHh-cCCCCEEEE--------EECCEEEEEeC-cCCHHHHH
Confidence             222111     1       12334442 3346788888884 665  4443        12456677775 46788888


Q ss_pred             HHHHHH
Q psy16848        469 KFVTDL  474 (514)
Q Consensus       469 ~~~~~l  474 (514)
                      .+++++
T Consensus       448 ~~~~~~  453 (454)
T TIGR00474       448 LLIEAL  453 (454)
T ss_pred             HHHHHh
Confidence            888775

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.77  E-value=8.3e-16  Score=141.99  Aligned_cols=216  Identities=17%  Similarity=0.128  Sum_probs=149.0

Q ss_pred             CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        257 VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                      .+++.+|++.-|.||||.++.   +.+|-+++++||++++.|.+|+..+.+--   +.+...+..++.+.+.|+||.-= 
T Consensus       177 ~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~ii---fsd~~~~w~~NiilC~SLSK~GL-  252 (417)
T COG3977         177 GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGII---FSDATPLWNENIILCMSLSKLGL-  252 (417)
T ss_pred             ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCcee---cccccccCCCCEEEEeehhhcCC-
Confidence            356889999999999999998   78888899999999999999985543221   12222223467899999999543 


Q ss_pred             CC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHHhC----CC
Q psy16848        334 IG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS--SQEGVELRAKHQDIVAYLRNELIQI----GF  404 (514)
Q Consensus       334 ~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~----g~  404 (514)
                      +|   |++++++++++.+.......+.  .......+.+...++.-+  +..-+-++--++++.+...+.|+..    .+
T Consensus       253 PG~R~GIiIane~viqaitnmn~iisL--ap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~  330 (417)
T COG3977         253 PGSRCGIIIANEKVIQAITNMNGIISL--APGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRC  330 (417)
T ss_pred             CCcceeEEEccHHHHHHHHhccceeee--cCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccce
Confidence            35   9999999999999887665532  223333333333333111  1111124444556666655555553    34


Q ss_pred             ccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCC------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        405 PVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVG------EEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       405 ~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~------~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .+..+.|. |+|+++.+ +.+..+++++| +++|+.+.||++++...+      ..|+|+++.  -.++.+++.+.+|.+
T Consensus       331 ~iHkpEGAIFlWLWf~dLPItt~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~--~~~~~ie~Gva~lae  407 (417)
T COG3977         331 LIHKPEGAIFLWLWFKDLPITTEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV--PEPEKIEKGVAILAE  407 (417)
T ss_pred             eeecCCcceeehhhhccCCCCHHHHHHHH-HhCeEEEecccccCCCCCCCCCCccceEEEecC--CCHHHHHHHHHHHHH
Confidence            44566666 45566553 46688999999 699999999997665432      479999997  578899999999998


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      .+++.
T Consensus       408 ~ve~~  412 (417)
T COG3977         408 EVERA  412 (417)
T ss_pred             HHHHH
Confidence            87764

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.76  E-value=1.6e-16  Score=175.79  Aligned_cols=308  Identities=15%  Similarity=0.183  Sum_probs=200.0

Q ss_pred             cCcchHHHHHHHHHHhHcCCCcEEEEe-ccccccccchhhccc--cCCCc----eEEecCccchhhhhhhhcCCCCeeec
Q psy16848         56 SGNSLFHEKLEEDVAKLHQKEAGLVFT-SCYVANDSTLFTLGK--MIPGL----HYISDAGNHASMIQGIRNSSAPKIIY  128 (514)
Q Consensus        56 ~~~~~~~~~~~~~la~~~~~~~~i~~~-sGt~a~~~~l~~l~~--~~~gd----~v~~~~~~h~~~~~~~~~~~~~~~~~  128 (514)
                      .|+.+...++++++++++|.+.+-+.+ +|++++.++|.++..  ..+|+    +|+++...|.++..+++..|.+++.+
T Consensus       538 qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v  617 (954)
T PRK05367        538 AGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVV  617 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEE
Confidence            356688899999999999999876655 455666555544331  23454    69999999999988777777777655


Q ss_pred             cCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhH
Q psy16848        129 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM  208 (514)
Q Consensus       129 ~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i  208 (514)
                      +.+..                                                               |           
T Consensus       618 ~~d~~---------------------------------------------------------------G-----------  623 (954)
T PRK05367        618 ACDEN---------------------------------------------------------------G-----------  623 (954)
T ss_pred             CCCCC---------------------------------------------------------------C-----------
Confidence            43100                                                               0           


Q ss_pred             HHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc
Q psy16848        209 DIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH  288 (514)
Q Consensus       209 ~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~  288 (514)
                                                       .-|.+.+++.+++. ..++++|++.++++.++...|+++|.++|+++
T Consensus       624 ---------------------------------~iD~~~L~~~i~~~-~~~la~V~it~pst~G~~e~~I~eI~~i~h~~  669 (954)
T PRK05367        624 ---------------------------------NIDLDDLRAKAEEH-ADNLAAIMITYPSTHGVFEETIREICEIVHEH  669 (954)
T ss_pred             ---------------------------------CcCHHHHHHHHhcc-CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHc
Confidence                                             01455555555432 22477888888877744457899999999999


Q ss_pred             CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC------CC-eEEEecHHHHHHHHhhcC---ceE--
Q psy16848        289 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN------IG-GYIVGTKNFIDTIRSYAA---GFI--  356 (514)
Q Consensus       289 gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~------~G-G~l~~~~~~~~~l~~~~~---~~~--  356 (514)
                      |+++++|.++..+..+     +... + ..++|++++|+||+++.      +| |++++++++...+.....   ...  
T Consensus       670 G~~v~VDgA~~~al~~-----l~~p-g-~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~  742 (954)
T PRK05367        670 GGQVYLDGANMNAQVG-----LARP-G-DIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETG  742 (954)
T ss_pred             CCEEEEECcChhhccC-----CCCh-h-hcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCC
Confidence            9999999999854432     1111 1 34799999999999753      33 788887666655432210   000  


Q ss_pred             ecc-CCcHH-HHHHHHHHH---HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCCc-----EEEE-EeCC--Cc
Q psy16848        357 FTT-SLPPT-VLAGAREAI---RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPSH-----IIPI-KIGN--PA  422 (514)
Q Consensus       357 ~~~-~~~~~-~~~a~~~~l---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-----~~~i-~l~~--~~  422 (514)
                      .+. ..++. ....+..++   ..+..+++.+..+....+++|+.+.|++. .+.+..+.+.     ++.+ .++.  +.
T Consensus       743 ~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~  822 (954)
T PRK05367        743 IGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGI  822 (954)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCCC
Confidence            010 11111 112222233   33334555566666669999999999874 4433332222     3333 2221  24


Q ss_pred             cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       423 ~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      ...++.++|. +.|+......++    ..+.++++++...+++|+|+++++|+.+.+++..
T Consensus       823 ~~~di~krL~-d~G~~~~t~~~p----v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        823 TVDDIAKRLI-DYGFHAPTMSFP----VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             CHHHHHHHHH-HCCCeEeecCCc----cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence            5688999995 999998653432    2568999999999999999999999998887654

>KOG1405|consensus

Probab=99.75  E-value=1.1e-16  Score=150.63  Aligned_cols=374  Identities=14%  Similarity=0.153  Sum_probs=234.4

Q ss_pred             CCceeeecccCCCC-------------CChhHHHHHHH-HHHHhCCCCCCcC-cccCcchHHHHHHHHHHhHc--CCCcE
Q psy16848         16 SNRVTCRLSSVQYK-------------VPKGGRKCLGE-ALEKFGTGAGGTR-NISGNSLFHEKLEEDVAKLH--QKEAG   78 (514)
Q Consensus        16 ~g~~~~d~~~~~~~-------------~~~~~~~a~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~--~~~~~   78 (514)
                      -|+.++|.+++.++             .||.+.++... ++.+--. . ++. ......++.+.+.+.+.+.-  |.+++
T Consensus        66 ~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~lv-n-RPALg~fP~kd~~~~l~~~ll~~APKG~~~v  143 (484)
T KOG1405|consen   66 IGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLV-N-RPALGNFPPKDFAEKLRQSLLSIAPKGQKQV  143 (484)
T ss_pred             cCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHHHh-c-cccccCCChhhHHHHHHHHHHhhCcchHHHH
Confidence            56777788777776             27887776532 2222100 0 111 11223466666666666653  45666


Q ss_pred             EEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCc--EEEeecc
Q psy16848         79 LVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAFETV  156 (514)
Q Consensus        79 i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~--~~~~~~~  156 (514)
                      +..-+|+.||+.|+.+..-            .|.+-     ..|     -..-+.++++..+.....+.|+  ++.|.|.
T Consensus       144 ~tm~cGs~aNEnA~K~afi------------wy~~k-----~rg-----~~~~s~~e~eScm~n~aPg~P~lsvlsF~ga  201 (484)
T KOG1405|consen  144 ITMLCGSCANENAYKTAFI------------WYRAK-----ERG-----QAGFSAEELESCMINQAPGAPDLSVLSFKGA  201 (484)
T ss_pred             HHHhccccccHHHHHHHHH------------HHHhh-----cCC-----CCCCCHHHHHHHHhcCCCCCCceeeeeeccc
Confidence            7778999999999977531            01110     001     1122567788888877777775  6778888


Q ss_pred             ccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC----ceeeecchHHHHhh
Q psy16848        157 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP----EVAIHASMIQGIRN  232 (514)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~----~v~~~~~~~~~~~~  232 (514)
                      ||                          ++..|....+.+                    +|    +++..+.....+..
T Consensus       202 FH--------------------------GR~~g~lstT~S--------------------KpIHKldiPaFdWPiA~fP~  235 (484)
T KOG1405|consen  202 FH--------------------------GRTFGSLSTTHS--------------------KPIHKLDIPAFDWPIAPFPR  235 (484)
T ss_pred             cc--------------------------cccccccccccC--------------------ccccccCCCCCCCCCCCCcc
Confidence            85                          222222221111                    11    11111100111110


Q ss_pred             CC-------CCEEEecCCChhHHHHHHhhccCC--CceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc
Q psy16848        233 SS-------APKIIYRHNDVNHLTQVLENMDVK--IPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       233 ~g-------~~~~~v~~~d~~~l~~~l~~~~~~--~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~  299 (514)
                      +.       ++=..-+...++++++.+.+...+  ..+++++++.++..|....    ++.|++++++||+.+|+||+++
T Consensus       236 ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQT  315 (484)
T KOG1405|consen  236 YKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQT  315 (484)
T ss_pred             ccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeec
Confidence            00       000000012467788888876433  4678999999999998765    8999999999999999999999


Q ss_pred             -ccccCCCCCCccccCCCccCceEEEcCCcccccCCCeEEEecHHHHHHHHhhcCceEecc-CCcHHHHHHHHHHHHHhh
Q psy16848        300 -VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTT-SLPPTVLAGAREAIRILS  377 (514)
Q Consensus       300 -~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~  377 (514)
                       .|..|+.+  ..+++++...+|+|  +|||-+-. |||.. ++++...    ...-.|++ -+.|.-...+...++.+.
T Consensus       316 GgGaTGk~W--aHehw~l~~PpD~v--TFSKK~q~-gGffh-~~~frpn----~pYrifNTWmGdP~k~lll~~vv~~I~  385 (484)
T KOG1405|consen  316 GGGATGKFW--AHEHWNLDSPPDVV--TFSKKFQT-GGFFH-DEEFRPN----EPYRIFNTWMGDPSKNLLLEEVVQEIK  385 (484)
T ss_pred             CCCccCcee--eehhcCCCCCccce--ehhhhhhc-Ccccc-CcccCCC----chHHHhhhhcCChHHHHHHHHHHHHHh
Confidence             66666543  56778888889999  99999876 56543 3333221    11111122 334555555566666665


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHhC--C----CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848        378 SQEGVELRAKHQDIVAYLRNELIQI--G----FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE  451 (514)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~  451 (514)
                      +++   +.++.....+.|.+.|.++  .    +.-...+|.|..+.++++...+.++..+ +-+|+.+.       ..+.
T Consensus       386 ~~~---Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~~~Rdk~i~~~-~~nGv~~G-------GCg~  454 (484)
T KOG1405|consen  386 RED---LLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSGSIRDKLILIA-RLNGVNLG-------GCGD  454 (484)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCChHHHHHHHHHH-HHcCceec-------cccc
Confidence            555   6777788888888888776  1    2223456778889999888888999999 49999974       3346


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..||+-+++..++...+-+++++++++..
T Consensus       455 ~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  455 KSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             ceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence            78999999888888999999999988764

>PLN02263 serine decarboxylase

Probab=99.75  E-value=1.8e-15  Score=154.17  Aligned_cols=297  Identities=13%  Similarity=0.064  Sum_probs=204.5

Q ss_pred             CcchHHHHHHHHHHhHcCCCc----EEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCC
Q psy16848         57 GNSLFHEKLEEDVAKLHQKEA----GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHND  132 (514)
Q Consensus        57 ~~~~~~~~~~~~la~~~~~~~----~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d  132 (514)
                      +..++..++-+++++++|.+.    +.++++||++|+.++.+.....+...++++..+|.|+..+++..|.+++.++-++
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~  209 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLV  209 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCC
Confidence            356777788899999998642    6888889999999998765544556899999999999999999988776554310


Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHH
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  212 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~  212 (514)
                                                                                     .|               
T Consensus       210 ---------------------------------------------------------------~g---------------  211 (470)
T PLN02263        210 ---------------------------------------------------------------SG---------------  211 (470)
T ss_pred             ---------------------------------------------------------------CC---------------
Confidence                                                                           00               


Q ss_pred             hhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCC--
Q psy16848        213 GTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA--  290 (514)
Q Consensus       213 ~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv--  290 (514)
                                                   .-|.+.+++.+.+.. .++.+|+.+..+.++|.+-|+++|.++|+++|+  
T Consensus       212 -----------------------------~mD~~aL~~aI~~d~-~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~  261 (470)
T PLN02263        212 -----------------------------EIDCADFKAKLLANK-DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQ  261 (470)
T ss_pred             -----------------------------cCcHHHHHHHHHhCC-CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCcc
Confidence                                         014555555555432 235677778888999999999999999999997  


Q ss_pred             ---EEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecHHHHHHHHhhcCc-----eEeccC
Q psy16848        291 ---LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTKNFIDTIRSYAAG-----FIFTTS  360 (514)
Q Consensus       291 ---~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~~~~~~l~~~~~~-----~~~~~~  360 (514)
                         ++++|.+++-... +.......+.. ...+|.++.++||+++. .+ |+++.++..++.+......     .+...+
T Consensus       262 ~~iwlHVDAA~GG~~l-Pf~~~~~~~df-~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gS  339 (470)
T PLN02263        262 DRFYIHCDGALFGLMM-PFVKRAPKVTF-KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGS  339 (470)
T ss_pred             CCeeEEEeccchhhHh-hhcccccccCC-CcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCC
Confidence               9999999982222 11111111222 23489999999999865 34 7777776555433221110     111112


Q ss_pred             CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc-cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEE
Q psy16848        361 LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE-HTPSHIIPIKIGNPALNTKICDMLLKEKGHYV  439 (514)
Q Consensus       361 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v  439 (514)
                      -+......+..+|..+..+++.+..++..++++++.+.|++.|+... .+....+.+.-+.        +... .+|..+
T Consensus       340 R~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~--------~~~~-~~gW~L  410 (470)
T PLN02263        340 RNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPK--------DEEF-VRRWQL  410 (470)
T ss_pred             CCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCc--------hHHh-hcceEE
Confidence            23334556667777776778888999999999999999999887654 4455565565332        1112 467766


Q ss_pred             ecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        440 QPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       440 ~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..        ..+.+++.+...++.+.+|++++.|++....
T Consensus       411 ~~--------~~~~~Hivvmphv~~~~id~fi~DL~~~~~~  443 (470)
T PLN02263        411 AC--------QGNIAHVVVMPSVTIEKLDYFLKELVEKRST  443 (470)
T ss_pred             cc--------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence            52        1246899998878999999999999987664

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.75  E-value=4.4e-17  Score=163.41  Aligned_cols=234  Identities=19%  Similarity=0.233  Sum_probs=159.4

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEecccc-ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYV-ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~-a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l  136 (514)
                      ......+.++.+|+.+|.++.+|.++||+ +|++++.+++.  |||.|+++++.|.|++.++.++|+.++.+.+.+.   
T Consensus        64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~--~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~---  138 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCR--PGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDN---  138 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTT--TTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE----
T ss_pred             CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcC--CCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCcc---
Confidence            35678999999999999999999999876 59999999987  9999999999999999999999999887654110   


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                                                                                ..|+                  
T Consensus       139 ----------------------------------------------------------~~gi------------------  142 (417)
T PF01276_consen  139 ----------------------------------------------------------EYGI------------------  142 (417)
T ss_dssp             ----------------------------------------------------------TTS-------------------
T ss_pred             ----------------------------------------------------------ccCC------------------
Confidence                                                                      0010                  


Q ss_pred             CCceeeecchHHHHhhCCCCEEEec--CCChhHHHHHHhhccCCC-ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEE
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMDVKI-PKLVAFETVHSMTGAICPLKELCEVSHQHGALTF  293 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~--~~d~~~l~~~l~~~~~~~-~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li  293 (514)
                                          ...++  .-+.+.+++.+++....+ .+++++++| +..|.+.++++|.++|++++++|+
T Consensus       143 --------------------~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~~~~~ll  201 (417)
T PF01276_consen  143 --------------------IGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICHKHGIPLL  201 (417)
T ss_dssp             --------------------BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEE
T ss_pred             --------------------ccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEECHHHHHHHhcccCCEEE
Confidence                                00111  113366777777764332 355888887 466999999999999999999999


Q ss_pred             Eecccc--ccccCCCCCCccccCCCccCce-------EEEcCCcccccC--CCeEEEecHHH---HHHHHhhcCceEecc
Q psy16848        294 VDEVHA--VGLYGEHGAGIGERDGQLHNMD-------IISGTLGKAFGN--IGGYIVGTKNF---IDTIRSYAAGFIFTT  359 (514)
Q Consensus       294 ~Dea~~--~g~~g~~~~~~~~~~~~~~~~d-------i~~~S~sK~lg~--~GG~l~~~~~~---~~~l~~~~~~~~~~~  359 (514)
                      +||||+  +++. +    +. ......++|       +++.|.||.+++  .++++..+.+.   .+++.....-+ .++
T Consensus       202 vDEAhGah~~F~-~----lp-~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~-~TT  274 (417)
T PF01276_consen  202 VDEAHGAHFGFH-P----LP-RSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMH-QTT  274 (417)
T ss_dssp             EE-TT-TTGGCS-G----GG-TTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHH-S-S
T ss_pred             EEccccccccCC-C----Cc-cchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHH-cCC
Confidence            999998  2222 1    11 111234666       999999999976  34777655432   24443322111 155


Q ss_pred             CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        360 SLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       360 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      +++.+.++.+-.+...+......++.++..++.+.+++.++
T Consensus       275 SPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~  315 (417)
T PF01276_consen  275 SPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKIN  315 (417)
T ss_dssp             S--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777766445567788888888888888884

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>KOG0633|consensus

Probab=99.74  E-value=1.5e-16  Score=143.97  Aligned_cols=270  Identities=15%  Similarity=0.092  Sum_probs=193.8

Q ss_pred             CCCceeeecCchhhHHHHHhhccCC--ceee--ec---chHHHHhhCCCCEEEec-CCChhHHHHHHhhcc--CCCceEE
Q psy16848        194 HGAGIGERDGQLHNMDIISGTLVNP--EVAI--HA---SMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMD--VKIPKLV  263 (514)
Q Consensus       194 ~~~g~~~~~G~~~~i~~~~~~l~~~--~v~~--~~---~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~--~~~~~~v  263 (514)
                      +..-++.+.|+.+.|+.++...++|  +.++  |.   .|.-.....+++++.+| ..|+....+.+.+..  ..++|.+
T Consensus        85 t~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~  164 (375)
T KOG0633|consen   85 TSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCI  164 (375)
T ss_pred             CccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEE
Confidence            4567889999999999999999999  4433  33   44455567789999999 446555444444432  3468999


Q ss_pred             EEecCCCCCccccCHHHHHHHHHHc-CCEEEEeccccccc-cCCCCCCccccCCCccCceEEEcCCcccccCCC---eEE
Q psy16848        264 AFETVHSMTGAICPLKELCEVSHQH-GALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYI  338 (514)
Q Consensus       264 v~~~~~nptG~~~~l~~l~~l~~~~-gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l  338 (514)
                      ++++|.||||..+..+.|.++..-- +.++++||+|-.+. .+..-....     .-.+-+++.++||.+|..|   |+-
T Consensus       165 F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~-----kYpNLivlqTlSKsfGLAGiRvG~~  239 (375)
T KOG0633|consen  165 FLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVK-----KYPNLIVLQTLSKSFGLAGIRVGYG  239 (375)
T ss_pred             EEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhH-----hCCceeehhhhhhhcCcceeEeecc
Confidence            9999999999999988888887654 79999999998332 111111111     2245688889999999988   988


Q ss_pred             EecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc--cccCCCcEEE
Q psy16848        339 VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP--VEHTPSHIIP  415 (514)
Q Consensus       339 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~--~~~~~~~~~~  415 (514)
                      +.+..+++.+.+...++    +.|.....++++++..-....++..+..+.+.+.++.+.|.+. ++.  +.+..++|+.
T Consensus       240 ~~~~~ia~iln~~KaPY----NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiL  315 (375)
T KOG0633|consen  240 AFPLSIAEILNRAKAPY----NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFIL  315 (375)
T ss_pred             cccHHHHHHHHhccCCc----cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEE
Confidence            99999999998877776    5566666666777763333456778888888889999999887 332  2244667888


Q ss_pred             EEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        416 IKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       416 i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +++.++  .-+..+...+..+.||.|+-...  .....+++|++.+   |+|+.+.+++.++++
T Consensus       316 i~v~~~~n~~akkly~q~at~~gVvVRfrgs--e~~c~G~lRitvG---t~EentvL~k~~K~~  374 (375)
T KOG0633|consen  316 IEVTGGDNGMAKKLYKQDATKMGVVVRFRGS--EEGCKGYLRITVG---TPEENTVLMKCLKQF  374 (375)
T ss_pred             EEEcCCCcHHHHHHHHHHHHhcceEEEEcCC--ccccceeEEEEcC---CcccchHHHHHHHhh
Confidence            887532  23444555554689999973221  1224689999999   899999999998875

>KOG2862|consensus

Probab=99.74  E-value=3.9e-15  Score=138.39  Aligned_cols=236  Identities=19%  Similarity=0.202  Sum_probs=179.3

Q ss_pred             hhCCCCEEEec-----CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC-HHHHHHHHHHcCCEEEEeccccccccC
Q psy16848        231 RNSSAPKIIYR-----HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-LKELCEVSHQHGALTFVDEVHAVGLYG  304 (514)
Q Consensus       231 ~~~g~~~~~v~-----~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~-l~~l~~l~~~~gv~li~Dea~~~g~~g  304 (514)
                      ++.|+++..++     .-.++.+.+.|.++   +++++++++..+.||+..| ++.+.++|++|+.++++|.+.++|.. 
T Consensus       112 ~r~ga~V~~v~~~~G~~~~le~i~~~lsqh---~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt-  187 (385)
T KOG2862|consen  112 RRYGAEVDVVEADIGQAVPLEEITEKLSQH---KPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGT-  187 (385)
T ss_pred             HhhCceeeEEecCcccCccHHHHHHHHHhc---CCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCc-
Confidence            34455555554     12467777777764   4789999999999999999 78889999999999999999997764 


Q ss_pred             CCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecHHHHHHHHhhcCc---e------------------EeccCC
Q psy16848        305 EHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTKNFIDTIRSYAAG---F------------------IFTTSL  361 (514)
Q Consensus       305 ~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~~~~~~l~~~~~~---~------------------~~~~~~  361 (514)
                             ++.-.+++.|+.....-|++|. +| +.+..++...++++.....   +                  .|..+.
T Consensus       188 -------~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~  260 (385)
T KOG2862|consen  188 -------EFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTP  260 (385)
T ss_pred             -------cceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCC
Confidence                   2222256899998888999975 56 8888888888888755431   0                  022356


Q ss_pred             cHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC----CCc-EEEEEeCCCccHHHHHHHHHHhCC
Q psy16848        362 PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT----PSH-IIPIKIGNPALNTKICDMLLKEKG  436 (514)
Q Consensus       362 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~-~~~i~l~~~~~~~~~~~~Ll~~~G  436 (514)
                      |...+..+.++|..+.++++++..++.++..++++..|+++|++....    ..+ .-.+.+|...+..+++.+++...+
T Consensus       261 pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~  340 (385)
T KOG2862|consen  261 PVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYV  340 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcC
Confidence            777889999999999999999999999999999999999998775322    122 445777878889999999985557


Q ss_pred             eEEecccCCCCCCCCcEEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Q psy16848        437 HYVQPINYPTVPVGEEKIRLAPTP-FHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       437 I~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~  480 (514)
                      +.+..+..+   .....+|+.+.. .-+.|.++..++.|+..+.+
T Consensus       341 vei~gglg~---~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  341 VEIGGGLGP---TVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             EEeccccCC---CcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            887766553   345699998743 34668899999999887765

>KOG0053|consensus

Probab=99.74  E-value=4.5e-16  Score=152.78  Aligned_cols=288  Identities=17%  Similarity=0.186  Sum_probs=193.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+....+++.++++.|.++++.++||..|+..++..+..  +|+++++...-|..+..-++                   
T Consensus        76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~--~g~~iV~~~~~Y~gT~~~l~-------------------  134 (409)
T KOG0053|consen   76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLP--AGDHIVATGDVYGGTLRILR-------------------  134 (409)
T ss_pred             CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcC--CCCcEEEeCCCcccHHHHHH-------------------
Confidence            456788999999999999999999999999999988876  89988887766666552221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (409)
T KOG0053|consen  135 --------------------------------------------------------------------------------  134 (409)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               .....+|.+..+++..+++.+++.+++    ++++|.+|+|.||+..+.|+++|+++|+++|+++++|+..
T Consensus       135 ---------~~~~~~gie~~~vd~~~~~~~~~~i~~----~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf  201 (409)
T KOG0053|consen  135 ---------KFLPKFGGEGDFVDVDDLKKILKAIKE----NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTF  201 (409)
T ss_pred             ---------HHHHHhCceeeeechhhHHHHHHhhcc----CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCc
Confidence                     222345666777776677777666654    6999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +-+..         ...+..++|||+.|.+|.+|+.+    |.++.+ +++.+.++......  ++..++..+......+
T Consensus       202 ~~p~~---------~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~l--g~~~~p~~~~ll~Rgl  270 (409)
T KOG0053|consen  202 GSPYN---------QDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDL--GWCEDPFDLFLLSRGL  270 (409)
T ss_pred             Ccccc---------cChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHh--cCCCCHHHHHHHhcCc
Confidence            83321         22334589999999999998743    888775 88888887766444  4467777777666655


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC---------CCcccc-----------CCCcEEEEEeCCCccHHHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI---------GFPVEH-----------TPSHIIPIKIGNPALNTKICDMLLK  433 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------g~~~~~-----------~~~~~~~i~l~~~~~~~~~~~~Ll~  433 (514)
                      +.+.     -+.++..+++..+.+.|+..         |++-.+           ..|.++.+.......+.++++.| +
T Consensus       271 ktl~-----lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~~L-K  344 (409)
T KOG0053|consen  271 KTLH-----LRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYDAL-K  344 (409)
T ss_pred             chhh-----hhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHHhh-h
Confidence            5331     13344445555555555554         221100           01223333344444566676666 2


Q ss_pred             hCCeEEecccC------CCC-------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        434 EKGHYVQPINY------PTV-------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       434 ~~GI~v~~~~~------~~~-------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      =.-...+-|..      |..             ...++.+|+|++.    |+++.+++-+.++++.+
T Consensus       345 ~~~~a~SlG~~eSL~~~p~~mth~~~~e~~~~~Gi~~~LVRvSVGi----Ed~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  345 LFTKAPSLGGNESLAEPPAIMTHASELEEREKFGIDPNLVRVSVGI----EDIEDLIKDFQQALEKA  407 (409)
T ss_pred             hhhcccCcCccchhhcchhhhccCCCHHHHHhcCCCCCcEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            22122221111      010             1136899999993    55666666666666543

>PLN02590 probable tyrosine decarboxylase

Probab=99.73  E-value=1.9e-15  Score=157.87  Aligned_cols=314  Identities=14%  Similarity=0.091  Sum_probs=203.4

Q ss_pred             cchHHHHHHHHHHhHcCCCc---------EEEEeccccccccchhhcccc---------CCCceEEecCccchhhhhhhh
Q psy16848         58 NSLFHEKLEEDVAKLHQKEA---------GLVFTSCYVANDSTLFTLGKM---------IPGLHYISDAGNHASMIQGIR  119 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~---------~i~~~sGt~a~~~~l~~l~~~---------~~gd~v~~~~~~h~~~~~~~~  119 (514)
                      ..++..++-+++++++|.+.         .+++++||+||+.+|.+....         .+.-.|++++.+|.|+..+++
T Consensus       168 ~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~  247 (539)
T PLN02590        168 ATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL  247 (539)
T ss_pred             hHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH
Confidence            35677778889999998663         578889999998888764320         133367789999999999999


Q ss_pred             cCCCC---eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCC
Q psy16848        120 NSSAP---KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGA  196 (514)
Q Consensus       120 ~~~~~---~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  196 (514)
                      ..|..   ++.++-+..                     +.|                                       
T Consensus       248 ilGlg~~~vr~Vp~d~~---------------------~~~---------------------------------------  267 (539)
T PLN02590        248 IGGIHEENIRLLKTDSS---------------------TNY---------------------------------------  267 (539)
T ss_pred             HcCCCcccEEEEeCCCC---------------------CCC---------------------------------------
Confidence            98873   332221100                     000                                       


Q ss_pred             ceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCcc
Q psy16848        197 GIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGA  274 (514)
Q Consensus       197 g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~  274 (514)
                                                                   .-|.+.+++.+++..  ...+-+|+.+.....+|.
T Consensus       268 ---------------------------------------------~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGa  302 (539)
T PLN02590        268 ---------------------------------------------GMPPESLEEAISHDLAKGFIPFFICATVGTTSSAA  302 (539)
T ss_pred             ---------------------------------------------cCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcc
Confidence                                                         003444444444321  223567788888899999


Q ss_pred             ccCHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecH--HHHHHHH
Q psy16848        275 ICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTK--NFIDTIR  349 (514)
Q Consensus       275 ~~~l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~--~~~~~l~  349 (514)
                      +-|+++|.++|++||+|+++|.+|+... ..+..+.+  ..+ ...+|.++.++||++.. .+ |+++.++  .+.+.+.
T Consensus       303 iDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~--~~G-ie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~  379 (539)
T PLN02590        303 VDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF--IDG-IENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALK  379 (539)
T ss_pred             cCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHH--hcC-CccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhh
Confidence            9999999999999999999999999322 22221111  223 24689999999999865 33 6665543  2333222


Q ss_pred             hhcC--------------ceEeccCC-cHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccC-CCc
Q psy16848        350 SYAA--------------GFIFTTSL-PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHT-PSH  412 (514)
Q Consensus       350 ~~~~--------------~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~  412 (514)
                      ....              ...++... -......+..+|+.+..+++.++.++..++++++.+.+++. ++++..+ .-+
T Consensus       380 ~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~  459 (539)
T PLN02590        380 TNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFS  459 (539)
T ss_pred             cCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceE
Confidence            1100              00011111 12345556666777667788899999999999999999887 6776654 344


Q ss_pred             EEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        413 IIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT-PFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       413 ~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~-~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      ++.|++...        ....++.+++.+...+++++...    .+..++|+++. ..+++++++.+++.|.+..+++.+
T Consensus       460 iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~----~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~  535 (539)
T PLN02590        460 LVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTAL----SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR  535 (539)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEE----CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            667776421        11346777775334455554332    34669999884 456688999999999998877653

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.73  E-value=1.3e-15  Score=161.99  Aligned_cols=310  Identities=14%  Similarity=0.086  Sum_probs=198.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccc-cccchhhccccCCCceEEecCccchhhhhh-hhcCCCCeeeccCCChHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVA-NDSTLFTLGKMIPGLHYISDAGNHASMIQG-IRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a-~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~-~~~~~~~~~~~~~~d~~~l  136 (514)
                      .....+.++..|+.||+++..|.++||++ |.+++.+++.  +||.|+++++.|.|+.++ +.++|+.++.+.+.. +  
T Consensus       173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~--~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~-n--  247 (720)
T PRK13578        173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLT--PGDLVLFDRNNHKSNHHGALIQAGATPVYLETAR-N--  247 (720)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHHcCCeEEEeeccc-c--
Confidence            45678999999999999999999999875 8999988877  999999999999999996 999999999765420 0  


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                                                                                ..|+.                 
T Consensus       248 ----------------------------------------------------------~~Gi~-----------------  252 (720)
T PRK13578        248 ----------------------------------------------------------PFGFI-----------------  252 (720)
T ss_pred             ----------------------------------------------------------ccCCc-----------------
Confidence                                                                      00000                 


Q ss_pred             CCceeeecchHHHHhhCCCCEEEecCC--ChhHHHHHHhhcc-C-----CCceEEEEecCCCCCccccCHHHHHHH-HHH
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYRHN--DVNHLTQVLENMD-V-----KIPKLVAFETVHSMTGAICPLKELCEV-SHQ  287 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~~~--d~~~l~~~l~~~~-~-----~~~~~vv~~~~~nptG~~~~l~~l~~l-~~~  287 (514)
                                           -.++..  +.+.+++.+++.. .     +..++++++++ +..|.++++++|.++ ++.
T Consensus       253 ---------------------g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~  310 (720)
T PRK13578        253 ---------------------GGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHL  310 (720)
T ss_pred             ---------------------CCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhcc
Confidence                                 000000  2244556665542 1     12588888887 567999999999998 688


Q ss_pred             cCCEEEEecccc-ccccCCCCCCccccCCCccCce----EEEcCCcccccC--CCeEEEecHHHH---------HHHHhh
Q psy16848        288 HGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMD----IISGTLGKAFGN--IGGYIVGTKNFI---------DTIRSY  351 (514)
Q Consensus       288 ~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~d----i~~~S~sK~lg~--~GG~l~~~~~~~---------~~l~~~  351 (514)
                      ++ +|++||||+ ...+.+..+.+.+. .+..++|    +++-|.||.+++  .++++..+...+         +++...
T Consensus       311 ~~-~llvDEAhgah~~F~p~~~~~p~~-al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~a  388 (720)
T PRK13578        311 CD-YILFDSAWVGYEQFIPMMADCSPL-LLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNA  388 (720)
T ss_pred             CC-cEEEeCcchhhhccCcccccCChh-hhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHH
Confidence            88 999999998 22222211112211 1244677    999999999976  236664433221         233222


Q ss_pred             cCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH-HhC-CCccccC--------------------
Q psy16848        352 AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL-IQI-GFPVEHT--------------------  409 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~-g~~~~~~--------------------  409 (514)
                      ..-+ .+++++.+.++.+-.+-..+..+...++.+...++...+++.+ +.. ++.+..+                    
T Consensus       389 l~m~-qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~  467 (720)
T PRK13578        389 FMLH-ASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDL  467 (720)
T ss_pred             HHHH-cCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccc
Confidence            1111 1445566666655555555543344566777777777777777 333 3332210                    


Q ss_pred             -------C----------------Cc-EEEEEeCCCcc------------HHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        410 -------P----------------SH-IIPIKIGNPAL------------NTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       410 -------~----------------~~-~~~i~l~~~~~------------~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                             .                .+ -+.+..+. .+            ...+.+.|. ++||.+.       ..+...
T Consensus       468 ~~w~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G-~~~~~G~~~~~Gipg~~l~~~L~-e~gI~~E-------~~d~~~  538 (720)
T PRK13578        468 RFFSFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPG-IDAETGEYEDFGIPATILANYLR-ENGIVPE-------KCDLNS  538 (720)
T ss_pred             cccccccCccccccccccccccccCCceEEEEcCC-cCcccccccccCccHHHHHHHHH-HcCCEEE-------ecCCCe
Confidence                   0                01 11222221 22            466777774 7799986       233456


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        454 IRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +-+-++...|++++++++++|.++.+.++
T Consensus       539 vL~l~s~g~t~~~~~~Lv~aL~~f~~~~~  567 (720)
T PRK13578        539 ILFLLTPAEDMAKLQQLVAMLARFEKHIE  567 (720)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            77778888999999999999998866443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.73  E-value=1.1e-15  Score=166.23  Aligned_cols=307  Identities=15%  Similarity=0.169  Sum_probs=206.6

Q ss_pred             ccCcchHHHHHHHHHHhHcCCCcE-EEEeccccccccchhhccc------cCCCceEEecCccchhhhhhhhcCCCCeee
Q psy16848         55 ISGNSLFHEKLEEDVAKLHQKEAG-LVFTSCYVANDSTLFTLGK------MIPGLHYISDAGNHASMIQGIRNSSAPKII  127 (514)
Q Consensus        55 ~~~~~~~~~~~~~~la~~~~~~~~-i~~~sGt~a~~~~l~~l~~------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~  127 (514)
                      ..|+.+...++++++++++|.+.+ ++.++|++|..++|.++..      -+..+.|+++...|......++.+|.+++.
T Consensus       525 sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~  604 (939)
T TIGR00461       525 VEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVP  604 (939)
T ss_pred             hHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEE
Confidence            456778899999999999999865 5556677776655555431      024578999999998877666666666655


Q ss_pred             ccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhh
Q psy16848        128 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN  207 (514)
Q Consensus       128 ~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~  207 (514)
                      ++.+.                                                               .|          
T Consensus       605 V~~d~---------------------------------------------------------------~G----------  611 (939)
T TIGR00461       605 VNCDQ---------------------------------------------------------------DG----------  611 (939)
T ss_pred             eccCC---------------------------------------------------------------CC----------
Confidence            44310                                                               00          


Q ss_pred             HHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC-HHHHHHHHH
Q psy16848        208 MDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-LKELCEVSH  286 (514)
Q Consensus       208 i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~-l~~l~~l~~  286 (514)
                                                        .-|.+.+++.+++. .+++++|++++++| .|.+.+ +++|.++|+
T Consensus       612 ----------------------------------~iDle~L~~~i~~~-~~~taaV~iT~pst-~G~~e~~I~eI~~iah  655 (939)
T TIGR00461       612 ----------------------------------NIDLVDLKNKAEQH-GDELAAVMVTYPST-HGVFEPTIQHACDIVH  655 (939)
T ss_pred             ----------------------------------CcCHHHHHHHHhhc-CCceEEEEEEeCCc-CceecccHHHHHHHHH
Confidence                                              11555666666542 24689999999998 688877 999999999


Q ss_pred             HcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC------CC-eEEEecHHHHHHHHhhcCce----
Q psy16848        287 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN------IG-GYIVGTKNFIDTIRSYAAGF----  355 (514)
Q Consensus       287 ~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~------~G-G~l~~~~~~~~~l~~~~~~~----  355 (514)
                      ++|.++++|.++..+..+     +... + ..++|++++|.||+++.      +| |++.+++++...+....-..    
T Consensus       656 ~~G~~v~VDgAq~~al~~-----l~~P-g-~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~  728 (939)
T TIGR00461       656 SFGGQVYLDGANMNAQVG-----LTSP-G-DLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITG  728 (939)
T ss_pred             HcCCEEEEEecChhhCCC-----CCCc-c-ccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccC
Confidence            999999999999743321     1111 1 45899999999997752      33 99999887666554211000    


Q ss_pred             -------Eec---cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC--CCcE---EEEEeCC
Q psy16848        356 -------IFT---TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT--PSHI---IPIKIGN  420 (514)
Q Consensus       356 -------~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~---~~i~l~~  420 (514)
                             +-.   ...+...+..+...+..+..+++.+..+....+++|+.+.|.+ ++++..+  .+.+   +.+.++.
T Consensus       729 ~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~  807 (939)
T TIGR00461       729 IGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRP  807 (939)
T ss_pred             CCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccc
Confidence                   000   1122333344444555555677788888888999999999988 4544322  2232   3344442


Q ss_pred             -----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        421 -----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       421 -----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                           +....+++++|+ +.|+......++   . .+.+-+.++...+++|+|+++++|.++.+++..
T Consensus       808 ~~~~~g~~~~dIakrL~-d~G~hapt~~~p---v-~g~lmiepTE~eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       808 LKAKTGIEAIDVAKRLQ-DYGFHAPTLSFP---V-PGTLMVEPTESESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             hhhhcCCCHHHHHHHHH-hCCeeccccCCc---c-CCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence                 245789999997 999986543322   1 236777777788999999999999998877654

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02880 tyrosine decarboxylase

Probab=99.73  E-value=9.6e-16  Score=160.04  Aligned_cols=312  Identities=14%  Similarity=0.078  Sum_probs=197.7

Q ss_pred             cchHHHHHHHHHHhHcCCCc---------EEEEeccccccccchhhcccc--------C-CCceEEecCccchhhhhhhh
Q psy16848         58 NSLFHEKLEEDVAKLHQKEA---------GLVFTSCYVANDSTLFTLGKM--------I-PGLHYISDAGNHASMIQGIR  119 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~---------~i~~~sGt~a~~~~l~~l~~~--------~-~gd~v~~~~~~h~~~~~~~~  119 (514)
                      ..++..++-+++++++|.+.         .+++++||++|+.+|.+....        + +.-.|++++..|.++..+++
T Consensus       120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~  199 (490)
T PLN02880        120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ  199 (490)
T ss_pred             cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence            35677788899999998664         577788899999888764320        0 22367789999999999999


Q ss_pred             cCCCC---eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCC
Q psy16848        120 NSSAP---KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGA  196 (514)
Q Consensus       120 ~~~~~---~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  196 (514)
                      ..|..   ++.++-+.                     ++.|                                       
T Consensus       200 ~lGlg~~~v~~Vp~d~---------------------~~~~---------------------------------------  219 (490)
T PLN02880        200 IAGIHPENCRLLKTDS---------------------STNY---------------------------------------  219 (490)
T ss_pred             HcCCCHHHEEEeecCC---------------------CcCC---------------------------------------
Confidence            99874   22222100                     0000                                       


Q ss_pred             ceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCcc
Q psy16848        197 GIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGA  274 (514)
Q Consensus       197 g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~  274 (514)
                                                                   .-|.+.+++.+++..  ...+-+|+.+....++|.
T Consensus       220 ---------------------------------------------~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Ga  254 (490)
T PLN02880        220 ---------------------------------------------ALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTA  254 (490)
T ss_pred             ---------------------------------------------cCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcc
Confidence                                                         003444555554321  223567788888899999


Q ss_pred             ccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecH-H-HHHHHH
Q psy16848        275 ICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTK-N-FIDTIR  349 (514)
Q Consensus       275 ~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~-~-~~~~l~  349 (514)
                      +.|+++|.++|++||+++++|.+|+.+.. .+..+.  ...+ ...+|.++.++||+++. .| |+++.++ + +.+.+.
T Consensus       255 iDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~--~l~g-ie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~  331 (490)
T PLN02880        255 VDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRH--YIDG-VEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLS  331 (490)
T ss_pred             cCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHH--HhcC-chhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHc
Confidence            99999999999999999999999995433 111100  1222 24689999999999865 44 7777653 2 223222


Q ss_pred             hhcCc-----------e---Eecc-CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccC-CCc
Q psy16848        350 SYAAG-----------F---IFTT-SLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHT-PSH  412 (514)
Q Consensus       350 ~~~~~-----------~---~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~  412 (514)
                      .....           +   .++. .........+...|+.+..+++.++.++..++++++.+.+++. ++++..+ ..+
T Consensus       332 ~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~  411 (490)
T PLN02880        332 TNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFS  411 (490)
T ss_pred             cCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceE
Confidence            11000           0   0000 0011112333344555555666666666679999999999876 7776654 455


Q ss_pred             EEEEEeCCC-c-------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCC-HHHHHHHHHHHHHHHHHc
Q psy16848        413 IIPIKIGNP-A-------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT-REMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       413 ~~~i~l~~~-~-------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t-~e~id~~~~~l~~~l~~~  481 (514)
                      ++.++++.. .       ...++.++|.++..+.+.....    .+..++|+++....| ++|++.+++.|.++.+++
T Consensus       412 iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~----~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~  485 (490)
T PLN02880        412 LVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVL----SGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL  485 (490)
T ss_pred             EEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEE----CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            777777531 1       1235666775445666664433    346799999976555 589999999999987764

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.73  E-value=2.3e-15  Score=159.87  Aligned_cols=308  Identities=13%  Similarity=0.095  Sum_probs=200.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEecccc-ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYV-ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~-a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .....+.++.+|+.+|+++..|.++||+ +|.+++.+++.  +||.|+++++.|.|+.+++.++|+.++.+.+..     
T Consensus       194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~--~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~-----  266 (713)
T PRK15399        194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAP--AGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR-----  266 (713)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHcCCeeEEecccc-----
Confidence            4567889999999999999999999976 48899988876  999999999999999999999999999775420     


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                +                                              ..|+.                  
T Consensus       267 ----------n----------------------------------------------~~Gi~------------------  272 (713)
T PRK15399        267 ----------N----------------------------------------------ALGIL------------------  272 (713)
T ss_pred             ----------c----------------------------------------------ccCCc------------------
Confidence                      0                                              00000                  


Q ss_pred             CceeeecchHHHHhhCCCCEEEec--CCChhHHHHHHhhccC-CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEE-E
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMDV-KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT-F  293 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~--~~d~~~l~~~l~~~~~-~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~l-i  293 (514)
                                          -.++  .-+.+.+++.+++... +++++++++++ +..|.++++++|.++|   |+.+ +
T Consensus       273 --------------------g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~il  328 (713)
T PRK15399        273 --------------------GGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIH  328 (713)
T ss_pred             --------------------CCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEE
Confidence                                0000  0133666777776543 34567888887 6779999999999999   6766 6


Q ss_pred             Eecccc-ccccCCCCCCccccCCCccCceEE---EcCCcccccC--CCeEEEecHHHH-HHHHhhcCceEeccCCcHHHH
Q psy16848        294 VDEVHA-VGLYGEHGAGIGERDGQLHNMDII---SGTLGKAFGN--IGGYIVGTKNFI-DTIRSYAAGFIFTTSLPPTVL  366 (514)
Q Consensus       294 ~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~---~~S~sK~lg~--~GG~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~  366 (514)
                      +||||+ ...+.+...+...... ..++|.+   +-|.||.+++  .++++..+..+- +++..... +..+++++.+.+
T Consensus       329 vDEAhgah~~F~p~~~~~sam~~-~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~-m~~STSPsY~Lm  406 (713)
T PRK15399        329 FDSAWVPYTHFHPIYQGKSGMSG-ERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFM-MHTSTSPSYPIV  406 (713)
T ss_pred             EeccchhhhhcCcccCCcChhhC-CCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHH-HHcCCCcHHHHH
Confidence            999998 1111111111111111 1145666   8899999976  236665433211 22222111 111456666777


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C------CccccCC-----------------------------
Q psy16848        367 AGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G------FPVEHTP-----------------------------  410 (514)
Q Consensus       367 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~~-----------------------------  410 (514)
                      +.+-.+...+......++.+...+....+++.+.+. +      +.+..+.                             
T Consensus       407 ASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~l  486 (713)
T PRK15399        407 ASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFL  486 (713)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccC
Confidence            766666666643455667777777888888877665 2      2222110                             


Q ss_pred             Cc-EEEEEeCC----------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        411 SH-IIPIKIGN----------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       411 ~~-~~~i~l~~----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .+ -+.+..+.          +.....+.+.| +++||.+.       ..+...+-+.++...|++++++++++|.++-+
T Consensus       487 DP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L-~e~gI~~E-------~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        487 DPVKVTILTPGMDEQGNMSEEGIPAALVAKFL-DERGIVVE-------KTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             CCceEEEEecCcccccccccCCCCHHHHHHHH-HHcCCEEE-------ecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            01 12233321          23455677777 59999986       23345677888888999999999999998755


Q ss_pred             Hc
Q psy16848        480 SL  481 (514)
Q Consensus       480 ~~  481 (514)
                      ..
T Consensus       559 ~~  560 (713)
T PRK15399        559 AY  560 (713)
T ss_pred             hh
Confidence            43

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.72  E-value=3.1e-15  Score=158.89  Aligned_cols=306  Identities=13%  Similarity=0.093  Sum_probs=198.9

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEecccc-ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYV-ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~-a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .....+.++..|+.+|+++..|.++||+ +|.+++.+++.  +||.|+++++.|.|+.+++.++|+.++.+.+..     
T Consensus       194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~--~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~r-----  266 (714)
T PRK15400        194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAP--AGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTR-----  266 (714)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHcCCeEEEecccc-----
Confidence            4667899999999999999999999976 58888888876  999999999999999999999999999775520     


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                +                                              ..|+.                  
T Consensus       267 ----------n----------------------------------------------~~Gi~------------------  272 (714)
T PRK15400        267 ----------N----------------------------------------------AYGIL------------------  272 (714)
T ss_pred             ----------c----------------------------------------------ccCCc------------------
Confidence                      0                                              00000                  


Q ss_pred             CceeeecchHHHHhhCCCCEEEec--CCChhHHHHHHhhccC-CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMDV-KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  294 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~--~~d~~~l~~~l~~~~~-~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~  294 (514)
                                          -.++  .-+.+.+++.+++... +++..++++++ +..|.+++++.|.++|+.++  +++
T Consensus       273 --------------------g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilv  329 (714)
T PRK15400        273 --------------------GGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHF  329 (714)
T ss_pred             --------------------cCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEE
Confidence                                0001  1134666777766543 22336777777 67799999999999999887  689


Q ss_pred             ecccc-ccccCCCCCCccccCCCccCc---e--EEEcCCcccccCC--CeEEEecHHH-HHHHHhhcCceEeccCCcHHH
Q psy16848        295 DEVHA-VGLYGEHGAGIGERDGQLHNM---D--IISGTLGKAFGNI--GGYIVGTKNF-IDTIRSYAAGFIFTTSLPPTV  365 (514)
Q Consensus       295 Dea~~-~g~~g~~~~~~~~~~~~~~~~---d--i~~~S~sK~lg~~--GG~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~  365 (514)
                      ||||+ ...+.+..+   +...+..+.   |  +++-|.||.+++-  ++++..+..+ .+++..... +..+++++.+.
T Consensus       330 DEAwgah~~F~p~~~---~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~~-m~~STSPsY~l  405 (714)
T PRK15400        330 DSAWVPYTNFSPIYE---GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYM-MHTTTSPHYGI  405 (714)
T ss_pred             EccchhhhccCcccC---CcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHHH-HHcCCCcHHHH
Confidence            99998 211211111   111111223   4  9999999999762  2443221111 112221111 11145666677


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C------CccccCC----------------------------
Q psy16848        366 LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G------FPVEHTP----------------------------  410 (514)
Q Consensus       366 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~~----------------------------  410 (514)
                      ++.+-.+...+..+...+..+...++...+++.+.++ +      +.+..+.                            
T Consensus       406 ~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~  485 (714)
T PRK15400        406 VASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMY  485 (714)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccc
Confidence            7776666666644455677777888888888888765 3      3222111                            


Q ss_pred             -Cc-EEEEEeCC----------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        411 -SH-IIPIKIGN----------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       411 -~~-~~~i~l~~----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                       .+ -+.+..+.          +.....+.+.| +++||.+.       ..+...+-+.++...|++++++++++|.++-
T Consensus       486 lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L-~e~gI~~E-------~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~  557 (714)
T PRK15400        486 LDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYL-DEHGIVVE-------KTGPYNLLFLFSIGIDKTKALSLLRALTDFK  557 (714)
T ss_pred             cCCceEEEEeCCCCCCccccccCCCHHHHHHHH-HHcCCEEE-------ecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence             01 12232222          22345666777 69999986       2345577788888899999999999999875


Q ss_pred             HH
Q psy16848        479 KS  480 (514)
Q Consensus       479 ~~  480 (514)
                      +.
T Consensus       558 ~~  559 (714)
T PRK15400        558 RA  559 (714)
T ss_pred             Hh
Confidence            54

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.72  E-value=2.8e-18  Score=166.56  Aligned_cols=261  Identities=22%  Similarity=0.217  Sum_probs=166.1

Q ss_pred             ecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCC
Q psy16848         22 RLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPG  101 (514)
Q Consensus        22 d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~g  101 (514)
                      ||.|.+  ++|++.+++.++..       +.. .||.++...++++++++++|.+.++|++|||.||..+++++.+  |+
T Consensus         1 Df~SD~--~~~~m~~a~~~a~~-------gd~-~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~--~~   68 (290)
T PF01212_consen    1 DFRSDT--PTPAMLEAMAAANV-------GDD-AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLR--PG   68 (290)
T ss_dssp             EES-SS--S-HHEEHHHHHTTS-------B-C-CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHH--TT
T ss_pred             CCCccC--CCHHHHHHHHcccc-------CCc-ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHh--cC
Confidence            555544  78999988854332       122 4678899999999999999999999999999999999999987  99


Q ss_pred             ceEEecCccchhhhhhh---hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCc
Q psy16848        102 LHYISDAGNHASMIQGI---RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  178 (514)
Q Consensus       102 d~v~~~~~~h~~~~~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (514)
                      +.|++....|....+.-   ...|.+++.++..+.                                             
T Consensus        69 ~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~---------------------------------------------  103 (290)
T PF01212_consen   69 ESVICADTAHIHFDETGAIEELSGAKLIPLPSDDD---------------------------------------------  103 (290)
T ss_dssp             EEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTG---------------------------------------------
T ss_pred             CceeccccceeeeeccchhhHhcCcEEEECCCccc---------------------------------------------
Confidence            99999999998765431   224444443322110                                             


Q ss_pred             eEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC-
Q psy16848        179 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV-  257 (514)
Q Consensus       179 ~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~-  257 (514)
                                        |                                            .-+.+.+++.+..... 
T Consensus       104 ------------------G--------------------------------------------~l~~~~l~~~~~~~~~h  121 (290)
T PF01212_consen  104 ------------------G--------------------------------------------KLTPEDLEAAIEEHGAH  121 (290)
T ss_dssp             ------------------T--------------------------------------------BB-HHHHHHHHHHHTGT
T ss_pred             ------------------C--------------------------------------------CCCHHHHHHHhhhcccc
Confidence                              0                                            0145555565555433 


Q ss_pred             -CCceEEEEecCCCC-CccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        258 -KIPKLVAFETVHSM-TGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       258 -~~~~~vv~~~~~np-tG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                       .++++|.+++++|. .|.+++   +++|.++|++||+.|+.|.+..+......+..+.++   ...+|++..|++|.++
T Consensus       122 ~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~---~~~~D~v~~~~tK~~g  198 (290)
T PF01212_consen  122 HPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEI---AAGADSVSFGGTKNGG  198 (290)
T ss_dssp             SGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHH---HTTSSEEEEETTSTT-
T ss_pred             CCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHH---hhhCCEEEEEEEcccc
Confidence             56889999999987 477787   789999999999999999998633221111111222   2468999999999987


Q ss_pred             CCC-eEEEecHHHHHHHHhhcCceEeccCCcHHHHH-HH--HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848        333 NIG-GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLA-GA--REAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV  406 (514)
Q Consensus       333 ~~G-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-a~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  406 (514)
                      .++ +++++++++++.........+..........+ ..  ..++..+ +.+ .....+..++.+++.+.|+.++..+
T Consensus       199 ~~~Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l-~~~-~~~~~~~~~~A~~La~~l~~~~~~~  274 (290)
T PF01212_consen  199 APGGAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRAL-ELW-LERARHANAMAKRLAAGLEALGGVL  274 (290)
T ss_dssp             SSSEEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHE-ECS-HHHHHCHHHHHHCHHHCHHEECEEE
T ss_pred             cccceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHH-Hhh-HHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            744 88899999776554443332111111111111 00  1122211 122 3456667788889999998886544

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.71  E-value=5e-15  Score=154.99  Aligned_cols=225  Identities=16%  Similarity=0.202  Sum_probs=141.1

Q ss_pred             ChhHHHHHHhhccCCCce--EEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCc
Q psy16848        244 DVNHLTQVLENMDVKIPK--LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNM  320 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~--~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~  320 (514)
                      |.+.+++.+++...++++  +|+....++.+|.+.|+++|.++|+++|+++++|.+|+.+.. ....+..  ..+ ...+
T Consensus       248 d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~--l~g-le~a  324 (522)
T TIGR03799       248 DVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL--LKG-IERA  324 (522)
T ss_pred             CHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH--hcC-chhC
Confidence            556666666543323333  444456677999999999999999999999999999984432 1100000  122 2368


Q ss_pred             eEEEcCCcccc-cCCC-eEEEec-HHHHHHHHhhcC-----------ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        321 DIISGTLGKAF-GNIG-GYIVGT-KNFIDTIRSYAA-----------GFIFTTSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       321 di~~~S~sK~l-g~~G-G~l~~~-~~~~~~l~~~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                      |.++.|.||++ ++.| |+++.+ +...+.+.....           .+.+..+-+.. ...+..+|+.+...+++++.+
T Consensus       325 DSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~-al~lw~aL~~lG~~G~~~ii~  403 (522)
T TIGR03799       325 DSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGM-AMLVYAGLHIIGRKGYELLID  403 (522)
T ss_pred             CEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchH-HHHHHHHHHHHhHHHHHHHHH
Confidence            99999999966 5666 777654 555555443110           11122222322 234677888887788999999


Q ss_pred             HHHHHHHHHHHHHHhC-CCccccC-CCcEEEEEeCCC----------------------ccHHHHHHHHHHhCCeE-Eec
Q psy16848        387 KHQDIVAYLRNELIQI-GFPVEHT-PSHIIPIKIGNP----------------------ALNTKICDMLLKEKGHY-VQP  441 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~i~l~~~----------------------~~~~~~~~~Ll~~~GI~-v~~  441 (514)
                      +..++++++.+.|++. ++.+..+ .-+++.+++...                      .....+.+++. +.|.. ++.
T Consensus       404 ~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~-~~G~~~vs~  482 (522)
T TIGR03799       404 QSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQR-EAGKSFVSR  482 (522)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHH-hcCCEEEEE
Confidence            9999999999999887 7877654 345666665321                      01135666664 55544 442


Q ss_pred             ccC-CCC--CCCCcEEEEEe-CCCCCHHHHHHHHHH
Q psy16848        442 INY-PTV--PVGEEKIRLAP-TPFHTREMIDKFVTD  473 (514)
Q Consensus       442 ~~~-~~~--~~~~~~iRl~~-~~~~t~e~id~~~~~  473 (514)
                      ... +..  ..+...+|+++ +..+|+++++.+++.
T Consensus       483 t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~  518 (522)
T TIGR03799       483 TRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE  518 (522)
T ss_pred             EEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence            221 000  11235799988 445677889887764

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.69  E-value=2.5e-14  Score=133.98  Aligned_cols=212  Identities=19%  Similarity=0.211  Sum_probs=161.9

Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+.+..++.++++++++++..||...++.+|.++++++|++++.|=+|+.|..        +.+--..+.|+.++|.+|.
T Consensus       158 ~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGav--------p~~Lh~~gaDfaigcsyKY  229 (407)
T COG3844         158 ALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAV--------PVDLHAAGADFAIGCSYKY  229 (407)
T ss_pred             HHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCc--------ceeecccCCCeeeeeecee
Confidence            45555567789999999999999999999999999999999999999998765        2222256899999999999


Q ss_pred             ccC-CC--eEEEecHHHHHHHHhhcCc-eE-------------------e-ccCCcHHHHHHHHHHHHHhhhchHHHHHH
Q psy16848        331 FGN-IG--GYIVGTKNFIDTIRSYAAG-FI-------------------F-TTSLPPTVLAGAREAIRILSSQEGVELRA  386 (514)
Q Consensus       331 lg~-~G--G~l~~~~~~~~~l~~~~~~-~~-------------------~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  386 (514)
                      +++ +|  +++...+...+...+...+ ++                   | ..+.+-..+++...+|+.+.+-.+.++++
T Consensus       230 LNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~  309 (407)
T COG3844         230 LNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRK  309 (407)
T ss_pred             ccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHH
Confidence            943 45  6666655544433221111 10                   1 12445677788888999988888999999


Q ss_pred             HHHHHHHHHHHHHHhC----CCccccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        387 KHQDIVAYLRNELIQI----GFPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~----g~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      +...+.+++.+.++..    ++.+..|     .|..+.+..+.   ..++.+.|. ++||...       -+.++.+|+.
T Consensus       310 kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~---~~~V~qaLi-~rGVigD-------~R~P~vlRfg  378 (407)
T COG3844         310 KSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH---GYQVMQALI-DRGVIGD-------FREPDVLRFG  378 (407)
T ss_pred             hhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---HHHHHHHHH-HcCcccc-------ccCCCeeeec
Confidence            9999999999998876    4444444     35577777764   678899996 9999964       2336799999


Q ss_pred             eC-CCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PT-PFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~-~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      |+ .+++-+|+=..++.|.+++++.
T Consensus       379 ftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         379 FTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             CccceechhHHHHHHHHHHHHHHhh
Confidence            85 5778899999999999999875

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.68  E-value=1.4e-14  Score=160.59  Aligned_cols=326  Identities=14%  Similarity=0.145  Sum_probs=207.8

Q ss_pred             hhhhhcCCceeeecccCCCCC--Chh-HHHHHHHHHHHhCCCCCC--cCcccCcchHHHHHHHHHHhHcCCCc--EEEEe
Q psy16848         10 FKQVHKSNRVTCRLSSVQYKV--PKG-GRKCLGEALEKFGTGAGG--TRNISGNSLFHEKLEEDVAKLHQKEA--GLVFT   82 (514)
Q Consensus        10 ~~~~~~~g~~~~d~~~~~~~~--~~~-~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~   82 (514)
                      ++.+.+++..+..|-+..|.+  .|. |++.+.+--. |-+.++-  +..+.|.-+...+++..+++++|.+.  +-+..
T Consensus        67 ~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~~-~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d  145 (954)
T PRK05367         67 LRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENPA-WYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLD  145 (954)
T ss_pred             HHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCcc-hhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccc
Confidence            444444544444444444444  465 4354444211 1122221  11244666777889999999999874  36667


Q ss_pred             ccccccccchhhccccCC--CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         83 SCYVANDSTLFTLGKMIP--GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        83 sGt~a~~~~l~~l~~~~~--gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      ++|.+...++.++. ..+  +++|++++..|++....++.                                        
T Consensus       146 ~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~hP~~~~v~~t----------------------------------------  184 (954)
T PRK05367        146 EATAAAEAMALAKR-VSKSKSNRFFVDDDVHPQTLDVLRT----------------------------------------  184 (954)
T ss_pred             cHHHHHHHHHHhhh-hccCCCCEEEEcCccCHHHHHHHHH----------------------------------------
Confidence            77777666665553 224  59999999999998754321                                        


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                          .....|.+++.+
T Consensus       185 --------------------------------------------------------------------~a~~~G~ev~~~  196 (954)
T PRK05367        185 --------------------------------------------------------------------RAEPLGIEVVVG  196 (954)
T ss_pred             --------------------------------------------------------------------HHHhCCCEEEEe
Confidence                                                                                112234444444


Q ss_pred             cCCC-hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        241 RHND-VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       241 ~~~d-~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                      +..+ .+          .+++..+++.. .|.+|.+.|+++|.++|+++|+++++|..+. .+..        ...+ ..
T Consensus       197 ~~~~d~~----------~~~~~~vlvq~-p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l--------~~pg-e~  256 (954)
T PRK05367        197 DAAKALD----------HDDVFGVLLQY-PGTSGEVRDYTALIAAAHARGALVAVAADLLALTLL--------TPPG-EM  256 (954)
T ss_pred             cCccCCC----------cccEEEEEEec-CCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCC--------CChh-hc
Confidence            4221 11          12344555555 5789999999999999999999999998664 2222        1111 45


Q ss_pred             CceEEEcCCccc-----ccCCC-eEEEecHHHHHHHHhhcCceE---------------------ec---cCCc-HHHHH
Q psy16848        319 NMDIISGTLGKA-----FGNIG-GYIVGTKNFIDTIRSYAAGFI---------------------FT---TSLP-PTVLA  367 (514)
Q Consensus       319 ~~di~~~S~sK~-----lg~~G-G~l~~~~~~~~~l~~~~~~~~---------------------~~---~~~~-~~~~~  367 (514)
                      ++|++++|.+|+     +|++| |++++++++.+.+....-+++                     +.   .+.. ...+.
T Consensus       257 GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~  336 (954)
T PRK05367        257 GADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLL  336 (954)
T ss_pred             CCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHH
Confidence            899999999998     55556 999999988877753222211                     00   0111 11122


Q ss_pred             HHHHH--HHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccC
Q psy16848        368 GAREA--IRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY  444 (514)
Q Consensus       368 a~~~~--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~  444 (514)
                      ++.+.  +.++...+++++.++...+..++.+.|++.|+++... ....+.+.++  .+..++.++|. ++||.++.   
T Consensus       337 a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~--~~~~~i~~~l~-~~gi~~~~---  410 (954)
T PRK05367        337 AVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVG--GDAAAVLARAL-AAGINLRR---  410 (954)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCC--CCHHHHHHHHH-HCCceecc---
Confidence            22222  2445567888999999999999999998888776533 2234556654  35789999995 99999842   


Q ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       445 ~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                          ...+.+|++++..+|++|++++++.|.
T Consensus       411 ----~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        411 ----VDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             ----ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence                124579999999999999999999997

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.66  E-value=3.8e-14  Score=156.36  Aligned_cols=330  Identities=12%  Similarity=0.096  Sum_probs=210.4

Q ss_pred             hhhhhcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcC--cccCcchHHHHHHHHHHhHcCCCc--EEEEe
Q psy16848         10 FKQVHKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTR--NISGNSLFHEKLEEDVAKLHQKEA--GLVFT   82 (514)
Q Consensus        10 ~~~~~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~--~i~~~   82 (514)
                      ++.+...+..+.+|.+..|.+   ++.+.+++.+..+-| +.++.+.  ...|..+...+++..+++++|.+-  +-++.
T Consensus        94 ~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~-TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d  172 (993)
T PLN02414         94 MKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWY-TQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLD  172 (993)
T ss_pred             HHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHHH-hhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecC
Confidence            444444555677787766654   345557777666532 2233222  124556677889999999999863  56677


Q ss_pred             ccccccccchhhcc-ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         83 SCYVANDSTLFTLG-KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        83 sGt~a~~~~l~~l~-~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      ++|.+..+++.+.. ..+++|+|++++..|++.+..++..                                        
T Consensus       173 ~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~----------------------------------------  212 (993)
T PLN02414        173 EGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTR----------------------------------------  212 (993)
T ss_pred             ChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHh----------------------------------------
Confidence            77777666665553 2224588999999999987554211                                        


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                          ....|.+++.++
T Consensus       213 --------------------------------------------------------------------a~~~GieV~~v~  224 (993)
T PLN02414        213 --------------------------------------------------------------------ADGLGLEVVVAD  224 (993)
T ss_pred             --------------------------------------------------------------------hhhcCCEEEEec
Confidence                                                                                112233333333


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      ..+.+        ...+.+..++ .+..|.+|.+.|+++|.++|+++|+++++ .++.++...     +.+..  ..++|
T Consensus       225 ~~~~~--------~~~~~v~~vl-vq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~-----l~~pg--e~GAD  287 (993)
T PLN02414        225 EKDFD--------YSSGDVCGVL-VQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTM-----LKPPG--EWGAD  287 (993)
T ss_pred             chhhc--------cccCceEEEE-EecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcC-----CCCHh--hccCc
Confidence            21111        0011233343 34446789999999999999999999999 777754431     11111  45899


Q ss_pred             EEEcCCcccccCCC------eEEEecHHHHHHHHhhcCceE---------------------ec-cCCcHH---HHHHHH
Q psy16848        322 IISGTLGKAFGNIG------GYIVGTKNFIDTIRSYAAGFI---------------------FT-TSLPPT---VLAGAR  370 (514)
Q Consensus       322 i~~~S~sK~lg~~G------G~l~~~~~~~~~l~~~~~~~~---------------------~~-~~~~~~---~~~a~~  370 (514)
                      +++++.+|+.++.|      |++++++++...+....-+++                     +. .+.+.-   .+.++.
T Consensus       288 i~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~l  367 (993)
T PLN02414        288 IVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANM  367 (993)
T ss_pred             EEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHH
Confidence            99999999984422      999999988664431111110                     00 112221   222222


Q ss_pred             HH--HHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC
Q psy16848        371 EA--IRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV  447 (514)
Q Consensus       371 ~~--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~  447 (514)
                      ++  +.++...+++++.+++..+..++.+.|.+.|+++..+ ....+.+.++   +..++.++|. ++||.++...    
T Consensus       368 a~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~vt~~~~---~~~~v~~~L~-~~gI~l~~~~----  439 (993)
T PLN02414        368 AAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDTVKVKCS---DADAIADAAA-KVGINLRVVD----  439 (993)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCeEEEecC---CHHHHHHHHH-HCCCeeEEec----
Confidence            22  2233456788899999999999999998888776443 2235666664   3578999995 9999876321    


Q ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        448 PVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       448 ~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                         .+.+|+|++..+|++|||+++++|..
T Consensus       440 ---~~~lrvs~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        440 ---ANTVTVSFDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             ---CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence               34799999999999999999999963

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.66  E-value=1.4e-14  Score=139.37  Aligned_cols=329  Identities=16%  Similarity=0.135  Sum_probs=209.2

Q ss_pred             eeeecccCCCCC---ChhHHHHHHHHHHHhCCCC--CCcCcccCcchHHHHHHHHHHhH-cCCC-------c--EEEEec
Q psy16848         19 VTCRLSSVQYKV---PKGGRKCLGEALEKFGTGA--GGTRNISGNSLFHEKLEEDVAKL-HQKE-------A--GLVFTS   83 (514)
Q Consensus        19 ~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~-~~~~-------~--~i~~~s   83 (514)
                      .-+|+.=..|.+   ...+.+++.++-...-...  ..+....|    ...+.+.++++ ||.+       +  .+-+.+
T Consensus        27 ~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G----~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~G  102 (396)
T COG1448          27 NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEG----LPEFLEAVQKLLFGADSPALAEDRVATVQTLG  102 (396)
T ss_pred             CeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCC----cHHHHHHHHHHhcCCCcHHHHhhhHhheecCC
Confidence            456775555553   3445555555444322221  12222333    34555566665 4533       1  355688


Q ss_pred             cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         84 CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        84 Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      ||-|+..+..-+.+..|...|+++++++..-..-++..|.++..|+.-|.+.                            
T Consensus       103 GTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~----------------------------  154 (396)
T COG1448         103 GTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAET----------------------------  154 (396)
T ss_pred             cchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecccccc----------------------------
Confidence            9998887777776666888899999999887777777788777766532110                            


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                      .                                             ..
T Consensus       155 --------------------------------~---------------------------------------------~~  157 (396)
T COG1448         155 --------------------------------K---------------------------------------------GL  157 (396)
T ss_pred             --------------------------------c---------------------------------------------cc
Confidence                                            0                                             12


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-ccccC--CCCCCccccCCCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLYG--EHGAGIGERDGQL  317 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g--~~~~~~~~~~~~~  317 (514)
                      |++.+...|++... +..+++-..+|||||.-++   |++|.++.++.+.+.++|-+|. ++. |  ....++- .....
T Consensus       158 df~~mla~L~~a~~-~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~-GleeDa~~lR-~~a~~  234 (396)
T COG1448         158 DFDGMLADLKTAPE-GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFAD-GLEEDAYALR-LFAEV  234 (396)
T ss_pred             cHHHHHHHHHhCCC-CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhcc-chHHHHHHHH-HHHHh
Confidence            67777777776643 3456667889999999998   8999999999999999999998 322 1  1110110 01001


Q ss_pred             cCceEEEcCCcccccCCC---eEE---EecHHHHHHHH----hhcCceEeccCCcHHHHHHHHHHH-----HHhhhchHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYI---VGTKNFIDTIR----SYAAGFIFTTSLPPTVLAGAREAI-----RILSSQEGV  382 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l---~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~a~~~~l-----~~~~~~~~~  382 (514)
                      ....+|+.||||.+|..|   |.+   ..+.+.+..+.    ...+. .|+ ++|...+......|     +.....++.
T Consensus       235 ~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~-~yS-nPP~~Ga~vva~IL~~p~Lra~W~~El~  312 (396)
T COG1448         235 GPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRT-NYS-NPPAHGAAVVATILNNPELRAEWEQELE  312 (396)
T ss_pred             CCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHh-ccC-CCchhhHHHHHHHhCCHHHHHHHHHHHH
Confidence            233799999999999866   433   23344444332    22211 112 22333333333333     322345678


Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        383 ELRAKHQDIVAYLRNELIQI----GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      .+++++.+++..+.+.|++.    .+.++..+.+||.+. +  . +.+-+.+|.++.||++..           .=|+++
T Consensus       313 ~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~-G--l-s~~QV~rLree~~IY~v~-----------sGRi~v  377 (396)
T COG1448         313 EMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYT-G--L-SPEQVDRLREEFGIYLVA-----------SGRINV  377 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecC-C--C-CHHHHHHHHHhccEEEec-----------CCeeee
Confidence            89999999999999999985    466777777787764 2  2 345567787899999862           118999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy16848        459 TPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~  477 (514)
                      . ..++..++.+++++.++
T Consensus       378 a-Gl~~~ni~~va~ai~~v  395 (396)
T COG1448         378 A-GLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             c-cCChhhHHHHHHHHHhh
Confidence            7 68899999999998875

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.65  E-value=2e-15  Score=135.64  Aligned_cols=165  Identities=24%  Similarity=0.275  Sum_probs=121.9

Q ss_pred             HHHHHHHHHhHc--CCCcEEEEeccccccccchhhccccCCCceEEecCccchhhh-hhhhcCCCCeeeccCCChHHHHH
Q psy16848         62 HEKLEEDVAKLH--QKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMI-QGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        62 ~~~~~~~la~~~--~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~-~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      ++++++++++++  +.+.++++++||+|+..++.++..  +++.|+++.+.|.+.. ..++..|.++..++.++...   
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~---   76 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--PGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGY---   76 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCc---
Confidence            468899999999  888889999999999999999865  7999999999998887 56666666655443321000   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (170)
T cd01494          77 --------------------------------------------------------------------------------   76 (170)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                               .....+...+....++++++++++++|++|...|+++|.++|+++|+++|+|++|
T Consensus        77 -------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~  131 (170)
T cd01494          77 -------------------------GGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAAS  131 (170)
T ss_pred             -------------------------cchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEeccc
Confidence                                     0000001111223467899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEEEec
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYIVGT  341 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l~~~  341 (514)
                      ..+......     ......++|+++.|++|++++.| |+++++
T Consensus       132 ~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~~~~~G~l~~~  170 (170)
T cd01494         132 AGGASPAPG-----VLIPEGGADVVTFSLHKNLGGEGGGVVIVK  170 (170)
T ss_pred             ccccccccc-----cccccccCCEEEEEcccccCCCceEEEEeC
Confidence            965543211     11113468999999999998766 888753

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.64  E-value=5e-14  Score=140.48  Aligned_cols=375  Identities=14%  Similarity=0.060  Sum_probs=226.7

Q ss_pred             CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchh
Q psy16848         16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLF   93 (514)
Q Consensus        16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~   93 (514)
                      ....+||+-|.+.-  ..++..+++..     |-.      .|+-++-..+|++.+++++|.++++++++|+.++.++..
T Consensus        39 s~dV~IDLrSDTgT~apS~~m~aAM~~-----GDD------~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~  107 (467)
T TIGR02617        39 SEDVFIDLLTDSGTGAVTQSMQAAMMR-----GDE------AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIP  107 (467)
T ss_pred             CCCeEEECccCCCCCCCCHHHHHHHHc-----CCc------ccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHH
Confidence            34568999766654  34566666654     211      123345568999999999999999999999999988888


Q ss_pred             hccccCCCceEEecCc----cchhhh----hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         94 TLGKMIPGLHYISDAG----NHASMI----QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~----~h~~~~----~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      .+++ .|||.+.++..    .|....    ..+.+.|+.++.....  +.++.                           
T Consensus       108 ~~~~-~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~--ea~~~---------------------------  157 (467)
T TIGR02617       108 VLIK-KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTK--EAFDT---------------------------  157 (467)
T ss_pred             hhcc-cccccccccccccccceEEEEecchHHHHHcCceeecccch--hhccc---------------------------
Confidence            8764 26777765443    222211    1233344433321110  00000                           


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~  245 (514)
                                             .+..+ -.|                                            .-|.
T Consensus       158 -----------------------~~~~~-fkG--------------------------------------------~~dl  169 (467)
T TIGR02617       158 -----------------------GVRYD-FKG--------------------------------------------NFDL  169 (467)
T ss_pred             -----------------------ccCCC-CCC--------------------------------------------CcCH
Confidence                                   00000 000                                            2278


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCC-CCccccC---HHHHHHHHHHcCCEEEEecccccc-cc-------CCCCCCcccc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHS-MTGAICP---LKELCEVSHQHGALTFVDEVHAVG-LY-------GEHGAGIGER  313 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~n-ptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g-~~-------g~~~~~~~~~  313 (514)
                      +.+++.+++...++...+.+.-.+| -.|.++|   ++++.++|++||+.++.|.+..+. ..       +..+.++.++
T Consensus       170 ~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI  249 (467)
T TIGR02617       170 EGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQI  249 (467)
T ss_pred             HHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHH
Confidence            8888999875434444443333334 3677888   799999999999999999998752 21       2222222222


Q ss_pred             C-CCccCceEEEcCCcccccCC-CeEEEecHH----HHHHHHhhcC---ceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848        314 D-GQLHNMDIISGTLGKAFGNI-GGYIVGTKN----FIDTIRSYAA---GFIFTTSLPPTVLAGAREAIRILSSQEGVEL  384 (514)
Q Consensus       314 ~-~~~~~~di~~~S~sK~lg~~-GG~l~~~~~----~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  384 (514)
                      . .....+|.++.|++|.++.+ ||+++++++    +.+.++....   ++..-.+++.-.+.++...|+...++   ..
T Consensus       250 ~rE~~~~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~---~y  326 (467)
T TIGR02617       250 TRETYKYADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL---DW  326 (467)
T ss_pred             HHHhhccCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccH---HH
Confidence            1 01136899999999999874 788888754    3344333221   22111156777777766666644322   35


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccCCCcEEEEE-------eC-CCccHHHHHHHHHHhCCeEEec-ccC-----CCCCC-
Q psy16848        385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIK-------IG-NPALNTKICDMLLKEKGHYVQP-INY-----PTVPV-  449 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~i~-------l~-~~~~~~~~~~~Ll~~~GI~v~~-~~~-----~~~~~-  449 (514)
                      .+.-....++|.+.|.+.|++++...|+-+.+.       +| .......++..|+.+.||...- |+.     +.... 
T Consensus       327 l~~ri~qv~yl~~~L~~~Gvpi~~~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~  406 (467)
T TIGR02617       327 LAYRINQVQYLVNGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQ  406 (467)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcEEecCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCcc
Confidence            555566677999999999999877444422221       22 2234678888888888988642 111     11111 


Q ss_pred             ---CCcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCccCCcchhhHhHHHHHHHH
Q psy16848        450 ---GEEKIRLAPTP-FHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILF  502 (514)
Q Consensus       450 ---~~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  502 (514)
                         .-..+|++++. ..|.+.+|..++++..+.++-....+..--.+++++++|.+.
T Consensus       407 ~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~i~g~~~~~ep~~lrhF~~~  463 (467)
T TIGR02617       407 LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPNIKGLTFTYEPKVLRHFTAR  463 (467)
T ss_pred             CCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhhcCCeEEEecCchheeeeec
Confidence               12689998874 568899999999999999876543333344678888876554

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.64  E-value=3.5e-14  Score=146.04  Aligned_cols=293  Identities=18%  Similarity=0.197  Sum_probs=190.7

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhhccccC---C----
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFTLGKMI---P----  100 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~l~~~~---~----  100 (514)
                      ++...+++...+.+   +......+-+...+.+++-..++++++.+   ...|+++||+||+.++.+.....   .    
T Consensus        75 ~~~a~~~~~~~~~~---nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~  151 (460)
T COG0076          75 PPVAAELLVSALNK---NLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAES  151 (460)
T ss_pred             HHHHHHHHHHHHhh---cCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence            34556666666554   22222222245677778888888888873   25888999999998887754300   0    


Q ss_pred             -----CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848        101 -----GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus       101 -----gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                           ...|+++...|.+...+++..|.....++....                      .|                  
T Consensus       152 ~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~----------------------~~------------------  191 (460)
T COG0076         152 GKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT----------------------DY------------------  191 (460)
T ss_pred             cccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC----------------------cc------------------
Confidence                 126899999999999888888776554322100                      00                  


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  255 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~  255 (514)
                                                                                        .-|.+.+++.+++.
T Consensus       192 ------------------------------------------------------------------~id~~~l~~~i~~~  205 (460)
T COG0076         192 ------------------------------------------------------------------RIDVDALEEAIDEN  205 (460)
T ss_pred             ------------------------------------------------------------------ccCHHHHHHHHHhh
Confidence                                                                              01445555555544


Q ss_pred             cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc---CCCCCCccc-cCCCccCceEEEcCCcccc
Q psy16848        256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY---GEHGAGIGE-RDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~---g~~~~~~~~-~~~~~~~~di~~~S~sK~l  331 (514)
                      ....  +|+....+.++|.+-|+++|.++|+++++++++|.|++....   ...+    . .++ ...+|.++.++||++
T Consensus       206 t~~g--~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~----~~~f~-l~~vdSIt~d~HK~g  278 (460)
T COG0076         206 TIGG--VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG----RWDFG-LEGVDSITVDGHKYG  278 (460)
T ss_pred             ccCc--eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccc----hhhcC-CCCceEEEECccccc
Confidence            2221  477888889999999999999999999999999999992221   1122    1 122 357899999999987


Q ss_pred             -cCCC-eEEEe-cHH-HHHHHHhhcCc---------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        332 -GNIG-GYIVG-TKN-FIDTIRSYAAG---------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       332 -g~~G-G~l~~-~~~-~~~~l~~~~~~---------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                       .+.| |+++. +++ +.+.+. +...         +....+.+.....+....+..+..+++.++.++..+..+++.+.
T Consensus       279 ~aP~~~G~il~rd~e~l~~~~~-~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~  357 (460)
T COG0076         279 LAPIGCGVVLFRDEEALRRILI-FADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEE  357 (460)
T ss_pred             CCCCCceEEEEECHHHhhhhhh-cccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHH
Confidence             4445 66655 453 444333 2111         11112334446677777787776788899999999999999999


Q ss_pred             HHhCC-Ccccc-CCCcEEEEEeCCCcc-HHHHHHHHHHhCCeEEec
Q psy16848        399 LIQIG-FPVEH-TPSHIIPIKIGNPAL-NTKICDMLLKEKGHYVQP  441 (514)
Q Consensus       399 L~~~g-~~~~~-~~~~~~~i~l~~~~~-~~~~~~~Ll~~~GI~v~~  441 (514)
                      |++.+ +.+.. +..+.+.+++++..+ ..+..+.+ ++.|..+..
T Consensus       358 l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~-~~~gw~v~~  402 (460)
T COG0076         358 LEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERL-DRRGWQVPA  402 (460)
T ss_pred             HHhCCCcEeecCCccceEEEEcCCcccchhchHHHH-HhcCceeec
Confidence            99995 77765 566788888865333 33444555 367777753

>PLN02452 phosphoserine transaminase

Probab=99.61  E-value=5.5e-13  Score=134.07  Aligned_cols=201  Identities=13%  Similarity=0.079  Sum_probs=151.4

Q ss_pred             CCceEEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        258 KIPKLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      ++.+.+.+++..+.+|.. .+++++.      ++++|+|.+.+++..        +.+...++.|+  .|.+|.+|++| 
T Consensus       144 ~~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~--------pidv~~~~v~~--~saqK~lGP~Gl  207 (365)
T PLN02452        144 PDAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSK--------PVDVSKYGVIY--AGAQKNVGPSGV  207 (365)
T ss_pred             CCCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCc--------ccCHHHcCEEE--EecccccCCCCe
Confidence            357889999999999995 6677664      389999999997764        22221234444  59999999999 


Q ss_pred             eEEEecHHHHHHHHhhcCce-Ee---------ccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        336 GYIVGTKNFIDTIRSYAAGF-IF---------TTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       336 G~l~~~~~~~~~l~~~~~~~-~~---------~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      |+++.++++++++......+ .+         -.+++...+.++..+|+.+.++ +++.+.++.+++.+++.+.|++. |
T Consensus       208 ~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G  287 (365)
T PLN02452        208 TIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNG  287 (365)
T ss_pred             EEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999987765432211 00         1255677889999999988776 79999999999999999999986 6


Q ss_pred             C-cc-ccC--CCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        404 F-PV-EHT--PSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       404 ~-~~-~~~--~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      + .. ..+  ++. .+.+.+++.....+|.+.+ +++|+...+|+...     +.+|+++--.++.++++.+++.|+++-
T Consensus       288 ~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~-~~~g~~~~~G~r~~-----gg~R~s~yna~~~~~v~~L~~~m~~f~  361 (365)
T PLN02452        288 FYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEA-AKAGMVQLKGHRSV-----GGMRASIYNAMPLAGVEKLVAFMKDFQ  361 (365)
T ss_pred             cccCCCChHHhCCeEEEEEcCCchhHHHHHHHH-HHCCCcccCCcccc-----CceEEECcCCCCHHHHHHHHHHHHHHH
Confidence            6 11 111  233 5667777655677899999 69999998877522     239999988999999999999999986


Q ss_pred             HH
Q psy16848        479 KS  480 (514)
Q Consensus       479 ~~  480 (514)
                      ++
T Consensus       362 ~~  363 (365)
T PLN02452        362 AK  363 (365)
T ss_pred             Hh
Confidence            64

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.58  E-value=6.3e-13  Score=133.64  Aligned_cols=202  Identities=16%  Similarity=0.147  Sum_probs=145.2

Q ss_pred             EEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEe
Q psy16848        263 VAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVG  340 (514)
Q Consensus       263 vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~  340 (514)
                      +++++.-+.||...|++++.+.+  +++++|+|.+-++|..        +..- + +.|+++.|..|.+++ +| ++++.
T Consensus       131 v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~--------~l~~-d-~iDv~~tgsQK~L~~ppGls~v~v  198 (374)
T TIGR01365       131 VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQ--------DLDY-H-KLDVVTFSWQKVLGGEGAHGMLIL  198 (374)
T ss_pred             EEEecCCCchheecccccccccc--CCCcEEEEccchhcCC--------CCCh-h-HCcEEEEechhccCCCCceEEEEE
Confidence            66888888999999987665332  5899999999997764        2221 2 489999999999976 45 78889


Q ss_pred             cHHHHHHHHhhcC-----c-e-------------Eecc--CCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHH
Q psy16848        341 TKNFIDTIRSYAA-----G-F-------------IFTT--SLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       341 ~~~~~~~l~~~~~-----~-~-------------~~~~--~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~  398 (514)
                      +++.+++.+....     . +             ...+  +.+...+.++..+++.+.++ +++++.++++++++.+++.
T Consensus       199 s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~  278 (374)
T TIGR01365       199 SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAF  278 (374)
T ss_pred             CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            9888877653211     0 0             0011  23334556667777766565 7999999999999999999


Q ss_pred             HHhCC-CccccC----CCc-EEEEEeCCC-c-----c-----HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        399 LIQIG-FPVEHT----PSH-IIPIKIGNP-A-----L-----NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       399 L~~~g-~~~~~~----~~~-~~~i~l~~~-~-----~-----~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++++| +.+...    .++ +..+.++++ .     +     ..++.+.| +++||.+.++....   .++.+|+..-..
T Consensus       279 l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~i~~G~~~~---~~~~fRIg~~G~  354 (374)
T TIGR01365       279 VAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTL-EKEGVAYDIGSYRD---APSGLRIWCGAT  354 (374)
T ss_pred             HHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHH-HHCCEEEecccccc---CCCceEEecCCc
Confidence            99998 655432    344 344566443 2     2     56788888 58899998776532   247899999889


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~  480 (514)
                      ++.+|++.+++.|+-+.+.
T Consensus       355 i~~~di~~l~~~l~~~~~~  373 (374)
T TIGR01365       355 VEKSDLECLCPWLDWAFAL  373 (374)
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            9999999999999876653

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.54  E-value=2.2e-12  Score=132.04  Aligned_cols=295  Identities=16%  Similarity=0.148  Sum_probs=181.1

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccc-cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVA-NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a-~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .....+.++..|+.+|+++..|..+||++ |..++.+++.  +||.|+++++.|.|+.+++-.+|+.++.+...      
T Consensus        69 ~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~--~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~------  140 (557)
T COG1982          69 EGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLT--PGDKVLVDRNCHKSIHHGLILAGATPVYLEPS------  140 (557)
T ss_pred             CccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcC--CCCEEEecCCccHHHHHHHHHcCCceEEecCC------
Confidence            35678999999999999999999888875 8888888876  99999999999999999999999998876441      


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                              ..|.+-++                                          .                     
T Consensus       141 --------~np~~gi~------------------------------------------g---------------------  149 (557)
T COG1982         141 --------RNPLYGII------------------------------------------G---------------------  149 (557)
T ss_pred             --------CCcccccc------------------------------------------C---------------------
Confidence                    00100000                                          0                     


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                              .-+.+.+.+.+.+..... |++++.++ +..|.+.++++|++.++.+++++.+|++
T Consensus       150 ------------------------gI~~~~~~~~l~~~~~~~-k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~dea  203 (557)
T COG1982         150 ------------------------GIPLETFKEALLAHPDAE-KLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEA  203 (557)
T ss_pred             ------------------------CCCHHHHHHHHHhChhhh-eeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhc
Confidence                                    114566666666543221 67777776 4669999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccC--CCeEEEecH-------HHHHHHHhhcCceEeccCCcHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN--IGGYIVGTK-------NFIDTIRSYAAGFIFTTSLPPTVLAG  368 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~--~GG~l~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~a  368 (514)
                      +..-+. ..+  ..+........|+++-|.||.+++  .+.++..+.       .+-+.+....     +++++...++.
T Consensus       204 h~~~~~-~~~--~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~-----STSPsY~l~AS  275 (557)
T COG1982         204 HPAHFD-FSP--MLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQ-----STSPSYPLMAS  275 (557)
T ss_pred             Cccccc-ccc--cCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHc-----cCCchHHHHHH
Confidence            984331 111  111122235789999999999976  225554432       2222222111     33455555554


Q ss_pred             HHHHHHHhhhchHHHH----HHHHHHHHHHHHHHHHhC-CCccccCC------C---------------c-EEEEEeC-C
Q psy16848        369 AREAIRILSSQEGVEL----RAKHQDIVAYLRNELIQI-GFPVEHTP------S---------------H-IIPIKIG-N  420 (514)
Q Consensus       369 ~~~~l~~~~~~~~~~~----~~~~~~~~~~l~~~L~~~-g~~~~~~~------~---------------~-~~~i~l~-~  420 (514)
                      +-.+-... .....+.    .+...+.++.+++...+. ++++..+.      +               + -+.+..+ .
T Consensus       276 lD~Ar~~~-~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~  354 (557)
T COG1982         276 LDVARMQE-GNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEF  354 (557)
T ss_pred             HHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCC
Confidence            44422222 2222333    455566666666666665 34433222      1               1 1223332 3


Q ss_pred             CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC--CCCCHHHHHHHHHHHH
Q psy16848        421 PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT--PFHTREMIDKFVTDLL  475 (514)
Q Consensus       421 ~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~--~~~t~e~id~~~~~l~  475 (514)
                      +.....+.+.| +++||...-       .++..+-+.++  ...+..+++.+++..+
T Consensus       355 Gipg~~v~~~L-~e~gii~e~-------~~d~~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         355 GIPGAIVAKYL-REHGIIPEE-------TGDYSNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             CCcHHHHHHHH-HHcCCeeee-------cCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence            34566777777 589988752       22223333333  2234445555555554

>KOG0258|consensus

Probab=99.54  E-value=2e-12  Score=123.91  Aligned_cols=337  Identities=15%  Similarity=0.121  Sum_probs=204.2

Q ss_pred             hHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecccc-ccccchhhccccCCCceEEecC
Q psy16848         33 GGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYV-ANDSTLFTLGKMIPGLHYISDA  108 (514)
Q Consensus        33 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~-a~~~~l~~l~~~~~gd~v~~~~  108 (514)
                      ++.+...+.+...|.+.+.+..+.|...+++.+++-+.+.=|.   +.-||.|+|++ |+...|..+. .++.+-|+++-
T Consensus        90 Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~-~~~~~GvliPi  168 (475)
T KOG0258|consen   90 DAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLI-AGKKTGVLIPI  168 (475)
T ss_pred             HHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHh-cCCCCceEeec
Confidence            4555556666666655555566667666666777666666553   23477777765 5666665554 35888899998


Q ss_pred             ccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccc
Q psy16848        109 GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV  188 (514)
Q Consensus       109 ~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (514)
                      +-|+-.-..+.+.|...+.|--+                                                    +    
T Consensus       169 PQYPLYsAti~l~~~~~v~YyLd----------------------------------------------------E----  192 (475)
T KOG0258|consen  169 PQYPLYSATISLLGGTQVPYYLD----------------------------------------------------E----  192 (475)
T ss_pred             CCCchhHHHHHHhCCcccceeec----------------------------------------------------c----
Confidence            88877666667777766654221                                                    0    


Q ss_pred             cccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC-CCceEEEEec
Q psy16848        189 GLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV-KIPKLVAFET  267 (514)
Q Consensus       189 g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~-~~~~~vv~~~  267 (514)
                          ..+|+                                             -|.+++++.++++.. =+++++++-|
T Consensus       193 ----e~~W~---------------------------------------------ld~~el~~~~~eA~k~i~~r~lvvIN  223 (475)
T KOG0258|consen  193 ----ESNWS---------------------------------------------LDVAELERSVDEARKGINPRALVVIN  223 (475)
T ss_pred             ----ccCCC---------------------------------------------CCHHHHHHHHHHHhccCCceEEEEEC
Confidence                11222                                             156777777776642 2578999999


Q ss_pred             CCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc--CCCCCCcccc----CCCc--cCceEEEcCCcccccC---
Q psy16848        268 VHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY--GEHGAGIGER----DGQL--HNMDIISGTLGKAFGN---  333 (514)
Q Consensus       268 ~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~--g~~~~~~~~~----~~~~--~~~di~~~S~sK~lg~---  333 (514)
                      |.||||.+.+   +++|.++|.+++++|+.||+|....+  +....++...    ....  .-..+-+.|.||++.+   
T Consensus       224 PGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG  303 (475)
T KOG0258|consen  224 PGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECG  303 (475)
T ss_pred             CCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeec
Confidence            9999999999   89999999999999999999985443  2222222111    1000  1122445578898733   


Q ss_pred             -CCeEEE---ecHHHHHHHHhhcCceEeccCCcHHHHHHHH----------HHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        334 -IGGYIV---GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAR----------EAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       334 -~GG~l~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~----------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                       .||++-   .+++..+.+.+....-.   ..+...+...-          ...+... ..-+.+.+.++.++..+.+.+
T Consensus       304 ~RGGYmEv~n~~prv~~qi~Kl~si~l---c~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~-~Ekd~il~~l~~ra~l~~~~~  379 (475)
T KOG0258|consen  304 QRGGYMESLNRDPRVKQQIKKLASIKL---CPQVSGQKLVDLVVNPPKPGDPSYDLFS-SEKDGILSSLRSRAKLTEDAF  379 (475)
T ss_pred             ccCCeeecccCChhHHHHHHHHHhhhh---cCCccchhhhceecCCCCCCCcchhhhh-hhhHhHHHHHHHHhHHHHHHH
Confidence             348862   23444433332221100   00000000000          0111111 112347778888888999999


Q ss_pred             HhC-CCccccCCCcEEE---EEeCCC----------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHH
Q psy16848        400 IQI-GFPVEHTPSHIIP---IKIGNP----------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE  465 (514)
Q Consensus       400 ~~~-g~~~~~~~~~~~~---i~l~~~----------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e  465 (514)
                      .++ |+....++|.|+.   +.+|..          ....-.+.+|++..||.+.||+.++...+.-.+|..+-.-.. +
T Consensus       380 ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~~-~  458 (475)
T KOG0258|consen  380 NSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPGL-E  458 (475)
T ss_pred             hhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCchh-H
Confidence            998 8888888888765   445532          112346678888999999999998988889999988753222 3


Q ss_pred             HHHHHHHHHHHHHHH
Q psy16848        466 MIDKFVTDLLAVWKS  480 (514)
Q Consensus       466 ~id~~~~~l~~~l~~  480 (514)
                      -++++-+.-++++.+
T Consensus       459 ~i~~~~~fH~~f~~~  473 (475)
T KOG0258|consen  459 IIEKFKKFHAEFMDE  473 (475)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            344444443444443

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.51  E-value=2.4e-12  Score=123.60  Aligned_cols=255  Identities=20%  Similarity=0.222  Sum_probs=146.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNH  135 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~  135 (514)
                      +.-++.+++-+|+.||.+++++   +.|||||+..+|..+++  |||+++.-.             |.        -++.
T Consensus        53 D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~Lr--pGD~ll~~t-------------G~--------PYDT  109 (403)
T PF06838_consen   53 DIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLR--PGDELLSIT-------------GK--------PYDT  109 (403)
T ss_dssp             -HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH----TT-EEEESS-------------SS----------CC
T ss_pred             CccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCC--CCCeEEEcC-------------CC--------chhh
Confidence            4568899999999999999988   57999999999999988  999988521             11        1355


Q ss_pred             HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848        136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  215 (514)
Q Consensus       136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l  215 (514)
                      |++.|.-...                                                 +                    
T Consensus       110 L~~VIG~~g~-------------------------------------------------~--------------------  120 (403)
T PF06838_consen  110 LEEVIGIRGN-------------------------------------------------G--------------------  120 (403)
T ss_dssp             HHHHHTSSSS-------------------------------------------------S--------------------
T ss_pred             HHHHhCCCCC-------------------------------------------------C--------------------
Confidence            6665543221                                                 1                    


Q ss_pred             cCCceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCCCCcccc----C---HHHHHHHHHH
Q psy16848        216 VNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC----P---LKELCEVSHQ  287 (514)
Q Consensus       216 ~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~----~---l~~l~~l~~~  287 (514)
                                 ...+.-.|.+...++ .+|-..+.+.+++..++++|++.+.--   .|..+    +   ++++.+++|+
T Consensus       121 -----------~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRS---rGYs~R~sl~i~~I~~~i~~vk~  186 (403)
T PF06838_consen  121 -----------PGSLKEFGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRS---RGYSWRPSLTIEEIKEIIKFVKE  186 (403)
T ss_dssp             -----------SSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S----TTSSS----HHHHHHHHHHHHH
T ss_pred             -----------CCChHHhCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecC---CCCCCCCCCCHHHHHHHHHHHHh
Confidence                       123344566777777 233333334444433467899887543   23332    2   4566666666


Q ss_pred             c--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhcC--ceEecc
Q psy16848        288 H--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYAA--GFIFTT  359 (514)
Q Consensus       288 ~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~~--~~~~~~  359 (514)
                      .  ++++++|.+|+.+..-.      +.  ...++|++++|+-|..|+    .|||+++++++++.......  +.+-..
T Consensus       187 ~~p~~iifVDNCYGEFvE~~------EP--~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~  258 (403)
T PF06838_consen  187 INPDVIIFVDNCYGEFVETQ------EP--TEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEV  258 (403)
T ss_dssp             H-TTSEEEEE-TTTTTTSSS-------G--GGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGS
T ss_pred             hCCCeEEEEeCCcceecccc------Cc--cccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCcccccc
Confidence            5  89999999998544211      11  144899999999999875    55999999999998764322  211111


Q ss_pred             CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC----Cc-EEEEEeCCCccHHHHHHHHH
Q psy16848        360 SLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP----SH-IIPIKIGNPALNTKICDMLL  432 (514)
Q Consensus       360 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~-~~~i~l~~~~~~~~~~~~Ll  432 (514)
                      +.+.-......+.|=  ..+   .+.....+-+......++++|+++.+..    +. +-.+.+.+......||+..-
T Consensus       259 G~t~~~~R~~~QGlF--lAP---~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l~~~e~l~~FC~~iQ  331 (403)
T PF06838_consen  259 GATLGTNRLMFQGLF--LAP---HVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIELGSPEKLIAFCQGIQ  331 (403)
T ss_dssp             S--TTTHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-SSHHHHHHHHHHHH
T ss_pred             ccCcchHHHHHhHHh--hch---HHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEECCCHHHHHHHHHHHH
Confidence            111111222222221  122   2555555566667777888899876542    33 56688888777778888873

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.47  E-value=3e-11  Score=120.26  Aligned_cols=201  Identities=11%  Similarity=0.073  Sum_probs=151.1

Q ss_pred             CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eE
Q psy16848        259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GY  337 (514)
Q Consensus       259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~  337 (514)
                      +.+.+.+++..+.+|...+     ++.+.+++++|+|.+-+++..        +.+-  .+.|+++.+..|.+|++| ++
T Consensus       143 d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~--------pid~--~~~dvi~agsQKnlgP~Gltv  207 (364)
T PRK12462        143 RAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSR--------PFDV--EAYGMVYAHAQKNLGPAGVTV  207 (364)
T ss_pred             CCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCC--------CCCh--HHccEEEeeccccCCCCceEE
Confidence            4677888888889999997     333347999999999997653        2221  134999999999999989 88


Q ss_pred             EEecHHHHHHHHhhcCce-E---------eccCCcHHHHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHHHHhCC-C
Q psy16848        338 IVGTKNFIDTIRSYAAGF-I---------FTTSLPPTVLAGAREAIRILSSQ--EGVELRAKHQDIVAYLRNELIQIG-F  404 (514)
Q Consensus       338 l~~~~~~~~~l~~~~~~~-~---------~~~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~  404 (514)
                      ++.+++.+++.......+ .         .-.+++.....++..+++.+.++  +++.+.++.+++++.+.+.+++.. +
T Consensus       208 vivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~  287 (364)
T PRK12462        208 AIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV  287 (364)
T ss_pred             EEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            899999887765422111 0         01145667778999999988777  899999999999999999999983 4


Q ss_pred             ccc--c--CCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        405 PVE--H--TPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       405 ~~~--~--~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      -..  .  .++. -+.+++++.....+|.+.+ +++|+....|+..     .+.+|.|+--.++.|+++.+++-|+++-+
T Consensus       288 ~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a-~~~gl~~lkGhr~-----vgg~Ras~yna~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        288 IDCHAHRAARSTMNVAFRFRQPRLDTLFKEQS-TEAGFCGLSGHRS-----IGGIRASLYNAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             ccCCCChhhcCcceEEEEcCCHHHHHHHHHHH-HHCCCccccCCcc-----cCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            321  1  1232 3456777766678899999 5999998766642     34699999889999999999999999865


Q ss_pred             H
Q psy16848        480 S  480 (514)
Q Consensus       480 ~  480 (514)
                      +
T Consensus       362 ~  362 (364)
T PRK12462        362 R  362 (364)
T ss_pred             h
Confidence            4

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.45  E-value=2.1e-11  Score=118.96  Aligned_cols=246  Identities=14%  Similarity=0.201  Sum_probs=155.6

Q ss_pred             HHhhCCCCEEEecC-CChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCC
Q psy16848        229 GIRNSSAPKIIYRH-NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHG  307 (514)
Q Consensus       229 ~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~  307 (514)
                      ...+.|.+++.|+. .+-..+.+.|++...++++++.+++|+.-.=.--++.+|+++.+++|..|..|.+-.-...|...
T Consensus       173 SAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r  252 (496)
T COG1003         173 SAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLAR  252 (496)
T ss_pred             hHhhcCceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccc
Confidence            33444555555552 22233333344444467999999999655333344999999999999999999998744443211


Q ss_pred             CCccccCCCccCceEEEcCCcccccC------CC-eEEEecHHHHHHHHhh----cC-ceEec------------cCCcH
Q psy16848        308 AGIGERDGQLHNMDIISGTLGKAFGN------IG-GYIVGTKNFIDTIRSY----AA-GFIFT------------TSLPP  363 (514)
Q Consensus       308 ~~~~~~~~~~~~~di~~~S~sK~lg~------~G-G~l~~~~~~~~~l~~~----~~-~~~~~------------~~~~~  363 (514)
                           .-  +.+.|++-..+||+|+.      +| |-+.++.+++..+..-    .. .+...            .-.|.
T Consensus       253 -----PG--d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~  325 (496)
T COG1003         253 -----PG--DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSA  325 (496)
T ss_pred             -----cc--ccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcc
Confidence                 11  44889999999999953      22 6677777777665431    10 00000            01222


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC--Cc--EEEEE-e--CCCccHHHHHHHHHHhC
Q psy16848        364 TVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP--SH--IIPIK-I--GNPALNTKICDMLLKEK  435 (514)
Q Consensus       364 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~~--~~~i~-l--~~~~~~~~~~~~Ll~~~  435 (514)
                      .....+..-+..+..+++...-+...-+++|+.+.|+.. .+++.+..  .+  ++..+ +  ..+....+++++|+ +.
T Consensus       326 ~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLl-D~  404 (496)
T COG1003         326 SILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLL-DY  404 (496)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHH-hc
Confidence            233333333333335566777777788999999999974 44443331  22  22222 1  12456789999998 99


Q ss_pred             CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCc
Q psy16848        436 GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLP  484 (514)
Q Consensus       436 GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~~  484 (514)
                      |+..-...||..  =...+-+-++-..+++++|+++++|.++.++.+..
T Consensus       405 GfHaPT~~FPli--V~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~  451 (496)
T COG1003         405 GFHAPTMYFPLI--VAGTLMIEPTESESKEELDRFIDAMIAIREEADAV  451 (496)
T ss_pred             CCCCCcccCccc--cccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999866666521  14578888888888999999999999998876543

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.41  E-value=2.8e-11  Score=117.14  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=124.4

Q ss_pred             CCCCEEEec----CCChhHHHHHHhhccCCCceEE-EEecCCCCCccccCHHHHHHHH----HHcCCEEEEecccccccc
Q psy16848        233 SSAPKIIYR----HNDVNHLTQVLENMDVKIPKLV-AFETVHSMTGAICPLKELCEVS----HQHGALTFVDEVHAVGLY  303 (514)
Q Consensus       233 ~g~~~~~v~----~~d~~~l~~~l~~~~~~~~~~v-v~~~~~nptG~~~~l~~l~~l~----~~~gv~li~Dea~~~g~~  303 (514)
                      .|.+.+.||    ..|++.+++.+.+.  +.+|.+ +++..+||+|.+++-+-+++++    .+.+..++.|++|++-.+
T Consensus       144 ~Giemi~VpM~~dGPDmD~Ve~LV~~D--~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL  221 (425)
T PF12897_consen  144 FGIEMIPVPMTEDGPDMDMVEELVAED--PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHL  221 (425)
T ss_dssp             CT-EEEEEEEETTEE-HHHHHHHTHTS--TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BS
T ss_pred             hCcEEEecCCCCCCCCHHHHHHHHhcC--CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeec
Confidence            344444444    12566666665432  235655 5566789999999965555555    356999999999996555


Q ss_pred             -CCCCC----Cccc---cCCCccCceEEEcCCccccc-CCC-eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        304 -GEHGA----GIGE---RDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       304 -g~~~~----~~~~---~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                       +....    .+.+   -.+ ..+..+++.|.||.-- +.| +++.++++-++.+.+....-  +.+..-+.+..=...+
T Consensus       222 ~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~--tIgpdKvNQLRHvrff  298 (425)
T PF12897_consen  222 YDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQ--TIGPDKVNQLRHVRFF  298 (425)
T ss_dssp             SSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH---S---HHHHHHHHHHH
T ss_pred             cccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCc--eeCccHHHHHHHHHHh
Confidence             22211    1111   122 3467788999999763 346 88999988887776654333  2344555555544444


Q ss_pred             HHhh---hchHHHHHHHHHHHHHHHHHHHHh-----CCC-ccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEeccc
Q psy16848        374 RILS---SQEGVELRAKHQDIVAYLRNELIQ-----IGF-PVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPIN  443 (514)
Q Consensus       374 ~~~~---~~~~~~~~~~~~~~~~~l~~~L~~-----~g~-~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~  443 (514)
                      ....   ..++++..+.++-+.+.+.+.|++     .++ .+..|.|+ |+.+...+ ..+..+.+.+ ++.||.+++..
T Consensus       299 ~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~-G~AkrvV~la-keAGV~LT~AG  376 (425)
T PF12897_consen  299 KDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD-GTAKRVVELA-KEAGVALTPAG  376 (425)
T ss_dssp             HSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST-T-HHHHHHHH-HHTTEE---TT
T ss_pred             cChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC-ChHHHHHHHH-HHhCceeCCCC
Confidence            4221   122333333333334444444433     234 34556655 77787766 3577888888 69999999843


Q ss_pred             --CCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        444 --YPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       444 --~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                        +|.. ...++.||++++ .-+.+|++.+++.+.-+++-
T Consensus       377 AtfPyg~DP~D~nIRiAPS-~P~leel~~Am~~~~~cv~l  415 (425)
T PF12897_consen  377 ATFPYGKDPRDSNIRIAPS-YPSLEELETAMDVFATCVKL  415 (425)
T ss_dssp             TTSGGG--TTS-EEEE--S-SS-HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCcEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence              3222 234789999998 57889999999888776543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.40  E-value=1.5e-11  Score=124.43  Aligned_cols=250  Identities=18%  Similarity=0.140  Sum_probs=161.6

Q ss_pred             chHHHHHHHHHHhHcCCC---------cEEEEeccccccccchhhccc-c-----------CCCceEEecCccchhhhhh
Q psy16848         59 SLFHEKLEEDVAKLHQKE---------AGLVFTSCYVANDSTLFTLGK-M-----------IPGLHYISDAGNHASMIQG  117 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~---------~~i~~~sGt~a~~~~l~~l~~-~-----------~~gd~v~~~~~~h~~~~~~  117 (514)
                      .++..++-+++++++|.+         ..+++++||++|+.++.+... .           .+.-.|++++..|.++..+
T Consensus        78 ~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Ka  157 (373)
T PF00282_consen   78 TEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKA  157 (373)
T ss_dssp             HHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHH
T ss_pred             ccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHh
Confidence            456667778888888876         268889999999988866432 0           1234789999999999999


Q ss_pred             hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        118 IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       118 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      ++..|..++.++-++                                                               .|
T Consensus       158 a~~lGlg~~~I~~~~---------------------------------------------------------------~~  174 (373)
T PF00282_consen  158 ARILGLGVRKIPTDE---------------------------------------------------------------DG  174 (373)
T ss_dssp             HHHTTSEEEEE-BBT---------------------------------------------------------------TS
T ss_pred             cceeeeEEEEecCCc---------------------------------------------------------------ch
Confidence            999888766544321                                                               00


Q ss_pred             eeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC--CceEEEEecCCCCCccc
Q psy16848        198 IGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK--IPKLVAFETVHSMTGAI  275 (514)
Q Consensus       198 ~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~--~~~~vv~~~~~nptG~~  275 (514)
                                                                  .-|.+.+++.+++...+  .+-+|+.+.....+|.+
T Consensus       175 --------------------------------------------~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~  210 (373)
T PF00282_consen  175 --------------------------------------------RMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI  210 (373)
T ss_dssp             --------------------------------------------SB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB
T ss_pred             --------------------------------------------hhhHHHhhhhhcccccccccceeeeccCCCcccccc
Confidence                                                        00445555555543222  13367777888899999


Q ss_pred             cCHHHHHHHHHHcCCEEEEecccccc-ccCCCCCCccccCCCccCceEEEcCCcccccCC-C-eEEEec-HHHHHHHHhh
Q psy16848        276 CPLKELCEVSHQHGALTFVDEVHAVG-LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-G-GYIVGT-KNFIDTIRSY  351 (514)
Q Consensus       276 ~~l~~l~~l~~~~gv~li~Dea~~~g-~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-G-G~l~~~-~~~~~~l~~~  351 (514)
                      -|+++|.++|+++++++++|.+++.. .+.+..+.  -..+ ...+|-++.++||+++.+ + |+++.+ +..+......
T Consensus       211 D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~--~~~g-i~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~  287 (373)
T PF00282_consen  211 DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRH--LLFG-IERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSI  287 (373)
T ss_dssp             -SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGG--GGTT-GGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEE
T ss_pred             cCHHHHhhhccccceeeeecccccccccccccccc--cccc-cccccccccchhhhhcCCccceeEEeecccchHHHhcc
Confidence            99999999999999999999999932 22222211  1223 357899999999999763 3 776655 4444332111


Q ss_pred             cCc---------------eEeccCCc-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc-CCCcE
Q psy16848        352 AAG---------------FIFTTSLP-PTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH-TPSHI  413 (514)
Q Consensus       352 ~~~---------------~~~~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~  413 (514)
                      ...               ..++...+ ......+...|+.+..+++.+..++..+..+++.+.|++. ++++.. +.-++
T Consensus       288 ~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~  367 (373)
T PF00282_consen  288 NADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNI  367 (373)
T ss_dssp             EETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSE
T ss_pred             ChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceE
Confidence            100               11111222 3445566667776767888899999999999999999998 577654 34557


Q ss_pred             EEEEe
Q psy16848        414 IPIKI  418 (514)
Q Consensus       414 ~~i~l  418 (514)
                      +.|++
T Consensus       368 vcFr~  372 (373)
T PF00282_consen  368 VCFRY  372 (373)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76664

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.39  E-value=1.3e-10  Score=127.08  Aligned_cols=329  Identities=12%  Similarity=0.118  Sum_probs=202.0

Q ss_pred             hhhhhcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCC--cCcccCcchHHHHHHHHHHhHcCCCcE--EEEe
Q psy16848         10 FKQVHKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGG--TRNISGNSLFHEKLEEDVAKLHQKEAG--LVFT   82 (514)
Q Consensus        10 ~~~~~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~--i~~~   82 (514)
                      ++.+...+..+..|.+..|.+   +|.+.+.+.+--+ |-+.++-  +..+.|.-+..-+++..+++++|.+-+  -+..
T Consensus        55 ~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~-~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d  133 (939)
T TIGR00461        55 LKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPG-WYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLD  133 (939)
T ss_pred             HHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCch-hhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccc
Confidence            444444554454554544444   3555545543211 1122221  122456677778899999999998843  5566


Q ss_pred             ccccccccchhhcc-ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         83 SCYVANDSTLFTLG-KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        83 sGt~a~~~~l~~l~-~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      .+|.+.++++.+.. ..++++.|++++..|+...+.++                                          
T Consensus       134 ~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~------------------------------------------  171 (939)
T TIGR00461       134 EGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLH------------------------------------------  171 (939)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHH------------------------------------------
Confidence            67666665555532 12245899999999988774432                                          


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                        ..+...|.+++.++
T Consensus       172 ------------------------------------------------------------------t~a~~~g~~v~~~~  185 (939)
T TIGR00461       172 ------------------------------------------------------------------TRAKPFGIEVIVVD  185 (939)
T ss_pred             ------------------------------------------------------------------HHHHhcCcEEEEEc
Confidence                                                                              11122333444442


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCc
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~  320 (514)
                         .+.    +++..  ++.++++.+| |..|.+.++++|.++++++|.+++++.-.. ++.+-+        .+ +.++
T Consensus       186 ---~~~----l~~~~--~~~~v~~q~P-n~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~--------Pg-e~Ga  246 (939)
T TIGR00461       186 ---CSD----IKKAV--DVFGCLLQYP-ATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTP--------PG-HYGA  246 (939)
T ss_pred             ---HHH----HhhcC--CEEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCC--------HH-HcCC
Confidence               222    22222  2567777777 567999999999999999999999954433 222211        12 4589


Q ss_pred             eEEEcCCcccc-----cCCC-eEEEecHHHHHHHHhhcCc----------eEec-------------c-CC-cHHHHHHH
Q psy16848        321 DIISGTLGKAF-----GNIG-GYIVGTKNFIDTIRSYAAG----------FIFT-------------T-SL-PPTVLAGA  369 (514)
Q Consensus       321 di~~~S~sK~l-----g~~G-G~l~~~~~~~~~l~~~~~~----------~~~~-------------~-~~-~~~~~~a~  369 (514)
                      ||++++..++-     |+++ |++.+++++...+....-+          +.++             + +. +...+.+.
T Consensus       247 Di~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~  326 (939)
T TIGR00461       247 DIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLAN  326 (939)
T ss_pred             cEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHH
Confidence            99976555432     2223 9999998888776422111          1110             0 11 11112222


Q ss_pred             HHH--HHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC
Q psy16848        370 REA--IRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT  446 (514)
Q Consensus       370 ~~~--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~  446 (514)
                      .++  +.++..+++.++.++...+..++.+.|.+.|+++..+. -.-+.++++. .+..++.+.+. ++||.++.     
T Consensus       327 ~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~~fF~~~~v~~~~-~~~~~i~~~~~-~~gi~l~~-----  399 (939)
T TIGR00461       327 VASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINKTWFDTLTVKVGN-GISSELLKAAE-EFNINLRA-----  399 (939)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCccceEEEEeCC-CCHHHHHHHHH-HCCCeeee-----
Confidence            222  44455677888999999999999999999998876541 1133455532 34788999995 99999763     


Q ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        447 VPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       447 ~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                        ..++.++++++-.+|++|++.+++.+.
T Consensus       400 --~~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       400 --VDTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             --cCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence              224589999999999999999999995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.36  E-value=6.3e-11  Score=119.17  Aligned_cols=199  Identities=20%  Similarity=0.305  Sum_probs=112.4

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC---
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN---  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~---  333 (514)
                      .+++++|++++|+ ..|.+-++++|.++++++|.++++ .+.-....      .....+ +.++||++++ +|.||.   
T Consensus       195 ~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~------~l~~Pg-e~GADI~vg~-~Q~fg~p~~  264 (429)
T PF02347_consen  195 DDDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALG------GLKSPG-EYGADIVVGE-HQTFGIPMG  264 (429)
T ss_dssp             STTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCC------TC--GG-GGT-SEEEEC-CTTTT---C
T ss_pred             ccCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHh------CcCChh-hcCccEEeeC-CCCCcccCC
Confidence            4568999999995 669999999999999999999987 55442211      111122 4589999877 887764   


Q ss_pred             ---CC-eEEEecHHHHHHHHhhcC----------ceEec--------------c--CCcHHHH-HHHHHHHHHhhhchHH
Q psy16848        334 ---IG-GYIVGTKNFIDTIRSYAA----------GFIFT--------------T--SLPPTVL-AGAREAIRILSSQEGV  382 (514)
Q Consensus       334 ---~G-G~l~~~~~~~~~l~~~~~----------~~~~~--------------~--~~~~~~~-~a~~~~l~~~~~~~~~  382 (514)
                         ++ |++.++++++..+.-..-          .+..+              .  ..+...+ .++..-+..+..+++.
T Consensus       265 ~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~  344 (429)
T PF02347_consen  265 FGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLR  344 (429)
T ss_dssp             CC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHH
Confidence               22 999999987776642111          11111              0  1122222 2333334455578899


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        383 ELRAKHQDIVAYLRNELIQI-GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      ++.++...++.++.+.|.+. ++++..+. -.++....++ ....++.++.. ..|+...   .   . ..+.+-++++-
T Consensus       345 ~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~-~~~~~l~~~~~-~~gl~~~---~---~-~~~~~li~~TE  415 (429)
T PF02347_consen  345 EIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD-KEVEELLKRGI-EGGLNLR---Y---P-DDGALLICVTE  415 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS--HHHHHHHHTT-----EEEG---G---G--SSEEEEE--T
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc-HHHHHHHHHHH-hcCCCcc---c---c-CCCeEEEEccC
Confidence            99999999999999999996 44433221 1133333332 33334555553 5564432   1   1 23488899999


Q ss_pred             CCCHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDL  474 (514)
Q Consensus       461 ~~t~e~id~~~~~l  474 (514)
                      ..|++|+|++++++
T Consensus       416 ~~t~edid~lv~~f  429 (429)
T PF02347_consen  416 TRTKEDIDRLVEAF  429 (429)
T ss_dssp             T--HHHHHHHHH--
T ss_pred             CCCHHHHHHHHhcC
Confidence            99999999999864

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG2467|consensus

Probab=99.29  E-value=2.1e-09  Score=102.70  Aligned_cols=225  Identities=17%  Similarity=0.171  Sum_probs=140.5

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      |++.+++.....   ++|+++.-.-  -.-..++.++++++|.+.|++++.|.+|--|.....  -++..   ..-+|||
T Consensus       177 DYD~Le~~A~~f---rPk~iiaG~S--aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~--vipsP---Fey~DiV  246 (477)
T KOG2467|consen  177 DYDKLEKTATLF---RPKLIIAGTS--AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAG--VIPSP---FEYCDIV  246 (477)
T ss_pred             ehHHHHHHHHhc---CCcEEEeccc--cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcc--cCCCc---cccccee
Confidence            677777766554   3566664322  223556689999999999999999999986554211  01112   2368999


Q ss_pred             EcCCcccc-cCCCeEEEecHHH---------------HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        324 SGTLGKAF-GNIGGYIVGTKNF---------------IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       324 ~~S~sK~l-g~~GG~l~~~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      +.+.||.+ |+.||++.-++.+               -+.+.....+ +...++....++++..+|..-..+...+..++
T Consensus       247 TTTTHKsLRGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP-~lQGGPHNhtIaalAvALkQa~tpefk~Yq~q  325 (477)
T KOG2467|consen  247 TTTTHKSLRGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFP-GLQGGPHNHTIAALAVALKQAMTPEFKEYQKQ  325 (477)
T ss_pred             eccccccccCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccc-cccCCCCcchHHHHHHHHHhhCCHHHHHHHHH
Confidence            99999999 7777777554321               1222111111 11223334455555666776667778888999


Q ss_pred             HHHHHHHHHHHHHhCCCccccC--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeCC---
Q psy16848        388 HQDIVAYLRNELIQIGFPVEHT--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPTP---  460 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~g~~~~~~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~~---  460 (514)
                      +.++...+.+.|.++|+.++..  ..+++.+.+........-+++.++.-+|.+..-..|..  ...++.+|+..+.   
T Consensus       326 V~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTs  405 (477)
T KOG2467|consen  326 VLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTS  405 (477)
T ss_pred             HHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcc
Confidence            9999999999999999988643  45677777754332333333433455666542222111  1235789996653   


Q ss_pred             -CCCHHHHHHHHHHHHHHHH
Q psy16848        461 -FHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       461 -~~t~e~id~~~~~l~~~l~  479 (514)
                       ...++|++++.+.|.+.++
T Consensus       406 RG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  406 RGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             cCccHHHHHHHHHHHHHHHH
Confidence             4457888888888877553

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.29  E-value=1.1e-10  Score=114.77  Aligned_cols=147  Identities=20%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             HHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC-CccccCHHHHHHHHHHcCCEEEEeccccccccCC
Q psy16848        227 IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM-TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE  305 (514)
Q Consensus       227 ~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np-tG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~  305 (514)
                      ...+++.|++++.+...+. .-.+.++.++++++++++=.+-+|. .-...+++++.++|+++|+++++|.+-+.-....
T Consensus       125 ~d~~~~aG~~l~EvG~tn~-t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e  203 (395)
T COG1921         125 PDIIRLAGAKLVEVGTTNR-THLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKE  203 (395)
T ss_pred             hHHHHHcCCEEEEecccCc-CCHHHHHHHhccCCeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccc
Confidence            3455666777777764332 1223344445667887765554443 2233458999999999999999999986322111


Q ss_pred             CCCCccccCCCccCceEEEcCCcccccC-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhch
Q psy16848        306 HGAGIGERDGQLHNMDIISGTLGKAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE  380 (514)
Q Consensus       306 ~~~~~~~~~~~~~~~di~~~S~sK~lg~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  380 (514)
                      +  ...+..  ..++|+|++|..|.+++ .+|++++++++++.+++.....  ........+++..++|+.+....
T Consensus       204 ~--~l~~~l--a~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~R--alrv~K~tla~l~~aLe~y~~~~  273 (395)
T COG1921         204 P--DLREAL--ALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLKR--ALRVDKETLAALEAALELYLQPE  273 (395)
T ss_pred             c--chhHHH--hcCCCEEEEecchhcCCCccceEechHHHHHHHHhhhhhh--hhhcCcHhHHHHHHHHHHHcCch
Confidence            1  111111  45899999999999965 5599999999999998765554  55788899999999999886543

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.25  E-value=6.2e-10  Score=103.49  Aligned_cols=257  Identities=19%  Similarity=0.250  Sum_probs=157.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNH  135 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~  135 (514)
                      +--++.|++-.|+.+|.+.+++   +-|||+|+..+|..+++  |||+++.-             +|.        -++.
T Consensus        64 D~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LR--pgDell~i-------------~G~--------PYDT  120 (416)
T COG4100          64 DLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILR--PGDELLYI-------------TGS--------PYDT  120 (416)
T ss_pred             ccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccC--CCCeEEEe-------------cCC--------cchh
Confidence            3456789999999999998765   67999999999999987  99988741             111        2456


Q ss_pred             HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848        136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  215 (514)
Q Consensus       136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l  215 (514)
                      |++.+.-.                                                |   .|                  
T Consensus       121 LeevIG~r------------------------------------------------g---~~------------------  131 (416)
T COG4100         121 LEEVIGLR------------------------------------------------G---EG------------------  131 (416)
T ss_pred             HHHHhccC------------------------------------------------C---CC------------------
Confidence            66555322                                                1   11                  


Q ss_pred             cCCceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCC----CCCccccCHHHHHHHHHHc--
Q psy16848        216 VNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVH----SMTGAICPLKELCEVSHQH--  288 (514)
Q Consensus       216 ~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~----nptG~~~~l~~l~~l~~~~--  288 (514)
                                 ...+.-+|.+...++ ..+-..+...++...+++||+|.+.---    .|+=.+..+++++++.++.  
T Consensus       132 -----------~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inp  200 (416)
T COG4100         132 -----------QGSLKDFGIKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINP  200 (416)
T ss_pred             -----------cccHHHhCcceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCC
Confidence                       234455666677777 2244444455555556779999874322    2322233367777788876  


Q ss_pred             CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhcC--ceEeccCCc
Q psy16848        289 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYAA--GFIFTTSLP  362 (514)
Q Consensus       289 gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~~--~~~~~~~~~  362 (514)
                      ++++.+|.+|+.+..-.      +.-  .-++|++.+|+-|..|+    .|||+++++++++.......  +.+...+.+
T Consensus       201 n~ivFVDNCYGEFvE~~------EPt--~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaPGIG~e~Gat  272 (416)
T COG4100         201 NVIVFVDNCYGEFVEEK------EPT--HVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAPGIGREGGAT  272 (416)
T ss_pred             CEEEEEeccchhhhhcc------Ccc--ccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecCCcccccccc
Confidence            79999999998443211      111  33889999999999876    45999999999987643221  111111111


Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC----CCc-EEEEEeCCCccHHHHHHHH
Q psy16848        363 PTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT----PSH-IIPIKIGNPALNTKICDML  431 (514)
Q Consensus       363 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~-~~~i~l~~~~~~~~~~~~L  431 (514)
                      --....+...|  +..   +.+.....+-.......|+++|+++.+.    ++. +-.+.+++..+...||+.+
T Consensus       273 ~~~l~~myqGl--FlA---Phvv~qa~Kga~fta~~le~lg~~~~P~~~~kRtDlIQavkf~~~eKmIaFcqai  341 (416)
T COG4100         273 LYSLREMYQGL--FLA---PHVVSQAVKGAHFTARFLEKLGFPVNPKYDAKRTDLIQAVKFGSKEKMIAFCQAI  341 (416)
T ss_pred             HHHHHHHHhhh--ccc---hHHHHHHhhhhHHHHHHHHHcCCCCCCcccccccchhhheecCCHHHHHHHHHHH
Confidence            11111111111  112   2344444454555566777888876432    232 4558888877777888877

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.25  E-value=1.1e-08  Score=108.61  Aligned_cols=173  Identities=13%  Similarity=0.106  Sum_probs=105.2

Q ss_pred             ChhHHHHHHhhccC--CCceEEEEecCCCCCccccCHHHHHHHH---HHcCC--EEEEeccccccc---c-CCCCCCccc
Q psy16848        244 DVNHLTQVLENMDV--KIPKLVAFETVHSMTGAICPLKELCEVS---HQHGA--LTFVDEVHAVGL---Y-GEHGAGIGE  312 (514)
Q Consensus       244 d~~~l~~~l~~~~~--~~~~~vv~~~~~nptG~~~~l~~l~~l~---~~~gv--~li~Dea~~~g~---~-g~~~~~~~~  312 (514)
                      |.+.+++.+++...  ..+-+|+.+.....+|.+-|+++|.++|   +++|+  ++++|.||+-..   + .+.+ .+.+
T Consensus       261 d~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~-~~~p  339 (608)
T TIGR03811       261 DINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDD-NFIP  339 (608)
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccc-cccc
Confidence            44555555544321  2244677778888999999999999999   67887  699999999211   1 1110 0000


Q ss_pred             ----------------------------cCCCccCceEEEcCCcccccC-CC-e-EEEecHHHHHHHHhhcCc-------
Q psy16848        313 ----------------------------RDGQLHNMDIISGTLGKAFGN-IG-G-YIVGTKNFIDTIRSYAAG-------  354 (514)
Q Consensus       313 ----------------------------~~~~~~~~di~~~S~sK~lg~-~G-G-~l~~~~~~~~~l~~~~~~-------  354 (514)
                                                  ..+ ...+|-++..+||++.. .+ | +++.++.+.+.+......       
T Consensus       340 ~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~g-le~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~  418 (608)
T TIGR03811       340 YDDLQEVHAEYGVFTEKKEYISREVYNAYKA-ISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGAD  418 (608)
T ss_pred             cchhhcccccccccccccccccHhHHHHHhc-CcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhcccccc
Confidence                                        112 24789999999999754 33 5 455556555544321110       


Q ss_pred             -------eEeccCCcHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHhCC-------Ccc---ccCCCcEEE
Q psy16848        355 -------FIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELIQIG-------FPV---EHTPSHIIP  415 (514)
Q Consensus       355 -------~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g-------~~~---~~~~~~~~~  415 (514)
                             ++...+-+.....++..+++.+  ..+++.++.++..+.++++.+.|++.+       +++   ..+.-+++.
T Consensus       419 ~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~  498 (608)
T TIGR03811       419 IPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVD  498 (608)
T ss_pred             CcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEE
Confidence                   0111122233455556666665  456788899999999999999998843       332   344555666


Q ss_pred             EEe
Q psy16848        416 IKI  418 (514)
Q Consensus       416 i~l  418 (514)
                      +++
T Consensus       499 Fr~  501 (608)
T TIGR03811       499 YVF  501 (608)
T ss_pred             EEE
Confidence            665

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.24  E-value=4.2e-09  Score=103.17  Aligned_cols=334  Identities=18%  Similarity=0.204  Sum_probs=201.2

Q ss_pred             hhhhcCCceeeecccCCCCC--ChhHHH-HHHHHHHHhCCCCCCc--CcccCcchHHHHHHHHHHhHcCCCc--EEEEec
Q psy16848         11 KQVHKSNRVTCRLSSVQYKV--PKGGRK-CLGEALEKFGTGAGGT--RNISGNSLFHEKLEEDVAKLHQKEA--GLVFTS   83 (514)
Q Consensus        11 ~~~~~~g~~~~d~~~~~~~~--~~~~~~-a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~s   83 (514)
                      +.+.++++.+..|.|..|.+  -|.++. .+.+--+ |-+.++-+  .-+.|.-+..-++...+++++|.+-  +-+.-.
T Consensus        67 ~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~pe-wyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~De  145 (450)
T COG0403          67 KEIASKNKVFTSFIGAGYYDTYTPPVILRNILENPE-WYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDE  145 (450)
T ss_pred             HHHHhcCchhhhhccCcccCCcCcHHHHHHhhcCcc-ccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhh
Confidence            33444666666676666665  255443 4433111 11222211  1123444555677888999999873  344555


Q ss_pred             cccccccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         84 CYVANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        84 Gt~a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      +|.+.++++.+... .++.+.++++...|+..++.++..                                         
T Consensus       146 aTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tr-----------------------------------------  184 (450)
T COG0403         146 ATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTR-----------------------------------------  184 (450)
T ss_pred             HHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhh-----------------------------------------
Confidence            66666666655432 224789999999999988655421                                         


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                         ....|.+++.++.
T Consensus       185 -------------------------------------------------------------------a~~~g~~i~~~~~  197 (450)
T COG0403         185 -------------------------------------------------------------------AEGLGIEIEVVDA  197 (450)
T ss_pred             -------------------------------------------------------------------cccCceEEEEecc
Confidence                                                                               0112334444444


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCc-cccCHHHHHHHHHHcCCEEEEe-ccccccccCCCCCCccccCCCccCc
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTG-AICPLKELCEVSHQHGALTFVD-EVHAVGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG-~~~~l~~l~~l~~~~gv~li~D-ea~~~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      .|.+.+++. +   ...+.++++..|+ -.| ...++.+|.+.++++|.++++= |.-+++.+.++|         ..++
T Consensus       198 ~d~~~l~~~-~---~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPG---------e~GA  263 (450)
T COG0403         198 DDLDDLESA-D---DGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPG---------EFGA  263 (450)
T ss_pred             chhhhhhhc-c---ccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCcc---------ccCC
Confidence            444444444 2   2346789999996 456 6666999999999999887753 444445443222         4589


Q ss_pred             eEEEcCCccc-----ccCCC-eEEEecHHHHHHHHhhcCceEe------------------------ccCC--cHHHHHH
Q psy16848        321 DIISGTLGKA-----FGNIG-GYIVGTKNFIDTIRSYAAGFIF------------------------TTSL--PPTVLAG  368 (514)
Q Consensus       321 di~~~S~sK~-----lg~~G-G~l~~~~~~~~~l~~~~~~~~~------------------------~~~~--~~~~~~a  368 (514)
                      ||++++..-.     ||++- |++.+++++...+.-.--+.+-                        +.+.  +...++.
T Consensus       264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~  343 (450)
T COG0403         264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLAL  343 (450)
T ss_pred             ceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHH
Confidence            9999987752     23222 8999988886554321111100                        1111  1222211


Q ss_pred             -HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCccccCCCcE--EEEEeCCCccHHHHHHHHHHhCCeEEeccc
Q psy16848        369 -AREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPVEHTPSHI--IPIKIGNPALNTKICDMLLKEKGHYVQPIN  443 (514)
Q Consensus       369 -~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~--~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~  443 (514)
                       +...+-++..+++.++..+..++..++++.|++.  |+.+... ..|  +.++++. .....+.++.. ..|+.++...
T Consensus       344 ~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~-~fFdt~~v~~~~-~~~~~l~~~~~-~~G~~L~~~~  420 (450)
T COG0403         344 AASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD-HFFDTFTVRVPE-EVAEALLAAAI-AGGINLRRVD  420 (450)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc-cceeeEEEecch-hHHHHHHHHHH-hcCCceeeec
Confidence             1112223446788999999999999999999976  5666544 222  3355553 34566777774 7898887332


Q ss_pred             CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        444 YPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       444 ~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                             ...+-+++.-.+|+++++.+++.+...
T Consensus       421 -------~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         421 -------ADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             -------CCceEEEeecccCHHHHHHHHHHHhhh
Confidence                   236778888888999999999998764

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.24  E-value=1.8e-11  Score=119.20  Aligned_cols=232  Identities=19%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccC-cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISG-NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~  109 (514)
                      .+++.+++.+.+..|..--  .-...| ...-...+++.++.++|++.++++++.+.|+..++.+++   +|.+|+++..
T Consensus        19 ~~~a~~a~~~~a~~Y~nLE--~dl~~G~Rg~R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la---~~~EvIvsRG   93 (367)
T PF03841_consen   19 SEEAIEAVAEVASGYSNLE--YDLETGKRGSRYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLA---KGKEVIVSRG   93 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccc---cccccccccc
Confidence            4777777777776654210  001111 122345678889999999999999999999999998887   5666666443


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +-.                                       -+-|.|+.                              
T Consensus        94 elV---------------------------------------eiGgsFRi------------------------------  104 (367)
T PF03841_consen   94 ELV---------------------------------------EIGGSFRI------------------------------  104 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc---------------------------------------cccccccc------------------------------
Confidence            221                                       11122211                              


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                                                           .......|++++.+...+-.. .+.++++++++|++++-.+.+
T Consensus       105 -------------------------------------p~vm~~sGa~lvEVGttN~t~-~~Dye~AI~e~Ta~ll~Vh~S  146 (367)
T PF03841_consen  105 -------------------------------------PDVMRQSGARLVEVGTTNRTH-LSDYEKAITENTAALLKVHTS  146 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------ccccccccccccccccccccc-ccccccccccccccccccccc
Confidence                                                 123344567777776432211 223344557789999887766


Q ss_pred             CC--Cccc--cCHHHHHHHHHHcCCEEEEeccccccc----cCCCCCCccccCCCccCceEEEcCCcccccCCC-eEEEe
Q psy16848        270 SM--TGAI--CPLKELCEVSHQHGALTFVDEVHAVGL----YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYIVG  340 (514)
Q Consensus       270 np--tG~~--~~l~~l~~l~~~~gv~li~Dea~~~g~----~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l~~  340 (514)
                      |.  .|..  .+++++.+++++|++++++|-.-+...    +|-+..+-. ...+..++|++++|..|.+|++- |++++
T Consensus       147 n~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v-~~~~~~GaDlV~fSGdKlLGGPQaGiI~G  225 (367)
T PF03841_consen  147 NFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTV-QEYLAAGADLVTFSGDKLLGGPQAGIIVG  225 (367)
T ss_dssp             --------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEETTSSSSS-S-EEEEE
T ss_pred             ccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHH-HHHhhcCCCEEEEECCCcCCCCCeEEEEe
Confidence            65  3433  459999999999999999998775211    111111111 11125689999999999997644 99999


Q ss_pred             cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh
Q psy16848        341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS  377 (514)
Q Consensus       341 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  377 (514)
                      ++++++.++.....-  .....-..++++.++|+.+.
T Consensus       226 kk~lI~~lk~~pl~R--alrvdK~tla~L~atL~~Y~  260 (367)
T PF03841_consen  226 KKELIEKLKKHPLGR--ALRVDKLTLAALEATLRLYL  260 (367)
T ss_dssp             EHHHHHHHHHHHHTT--T-B--HHHHHHHHHHHHH--
T ss_pred             CHHHHHHHhhCCCcc--eEeeCHHHHHHHHHHHHHHH
Confidence            999999998643222  44678888999999998765

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG1383|consensus

Probab=99.20  E-value=3.8e-09  Score=104.30  Aligned_cols=248  Identities=18%  Similarity=0.208  Sum_probs=163.0

Q ss_pred             chHHHHhhCCCCEEEec--CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH-cCCEEEEecccccc
Q psy16848        225 SMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVG  301 (514)
Q Consensus       225 ~~~~~~~~~g~~~~~v~--~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~~g  301 (514)
                      .+..+...++.+...++  ..++..+.........++|.+++.+.++.|+|.+-++++|.++.-+ +++.+++|.+-+ |
T Consensus       182 a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~G-g  260 (491)
T KOG1383|consen  182 AFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLG-G  260 (491)
T ss_pred             HHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCc-c
Confidence            44455555666666666  4577777777777778889999999999999999999999999999 999999999998 3


Q ss_pred             ccCCCC-CCccccCCC-ccCceEEEcCCcc-cccCCC-eEEE-ecHHHHHH-HHh-------hcCceEeccCCcHHHHHH
Q psy16848        302 LYGEHG-AGIGERDGQ-LHNMDIISGTLGK-AFGNIG-GYIV-GTKNFIDT-IRS-------YAAGFIFTTSLPPTVLAG  368 (514)
Q Consensus       302 ~~g~~~-~~~~~~~~~-~~~~di~~~S~sK-~lg~~G-G~l~-~~~~~~~~-l~~-------~~~~~~~~~~~~~~~~~a  368 (514)
                      +.-+.+ .... .+++ .....-...+.|| ++.+.| ++++ ..+++... +.-       ....++...+-+....++
T Consensus       261 Fi~p~~~~~~~-~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~  339 (491)
T KOG1383|consen  261 FINPAGYLNEE-EFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAA  339 (491)
T ss_pred             ccccccccCcc-ccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHH
Confidence            332100 0111 1222 2344455567888 455566 6654 44444321 110       011121222334455666


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCCcEEEEEe-C-CCccHHHHHHHHHHhCCeEEecccCC
Q psy16848        369 AREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPSHIIPIKI-G-NPALNTKICDMLLKEKGHYVQPINYP  445 (514)
Q Consensus       369 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~i~l-~-~~~~~~~~~~~Ll~~~GI~v~~~~~~  445 (514)
                      ..+++-.+..++..+..+++.+....+++.+++. ++.++..  +.+.+.+ . ...+--++.+.| .+.|..+....+|
T Consensus       340 ~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gk--p~vs~~~~~s~~~~i~elsd~l-~~~GW~lnalq~P  416 (491)
T KOG1383|consen  340 QWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGK--PLVSFILFGSNDVNIFELSDLL-RKKGWILNALQFP  416 (491)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCC--CcEEEEEccCCccchhhhhHHH-HhcCcCccccCCC
Confidence            6777766667888888899999999999999997 6665544  2223222 2 223345677777 5999988655443


Q ss_pred             CCCCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHHHHcCC
Q psy16848        446 TVPVGEEKIRLAPTPFHTREM-IDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       446 ~~~~~~~~iRl~~~~~~t~e~-id~~~~~l~~~l~~~~~  483 (514)
                            ..+-+++...+..++ .++++.-++++++++..
T Consensus       417 ------~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~  449 (491)
T KOG1383|consen  417 ------AAIHICVTRVHAREDVADRFVADIRKVVEELKS  449 (491)
T ss_pred             ------CceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence                  256677766666665 68899999999988754

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.14  E-value=2e-08  Score=95.91  Aligned_cols=259  Identities=15%  Similarity=0.155  Sum_probs=161.2

Q ss_pred             ChhHHHHHHhhccCCCceEEEEe-cCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-cccc--CC-----CCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFE-TVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLY--GE-----HGAGIG  311 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~-~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~--g~-----~~~~~~  311 (514)
                      |++.+++.+++...++...|+.. +.|+..|...+   ++++.++|++|++.++.|.+.. ...+  ..     ..+++.
T Consensus       170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~  249 (471)
T COG3033         170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIE  249 (471)
T ss_pred             CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHH
Confidence            78999999999887777666544 44556677777   7999999999999999999876 2221  11     111111


Q ss_pred             ccCC-CccCceEEEcCCcc-cccCCCeEEEecHH----HHHHHHhhc---CceEeccCCcHHHHHHHHHHHHHhhhchHH
Q psy16848        312 ERDG-QLHNMDIISGTLGK-AFGNIGGYIVGTKN----FIDTIRSYA---AGFIFTTSLPPTVLAGAREAIRILSSQEGV  382 (514)
Q Consensus       312 ~~~~-~~~~~di~~~S~sK-~lg~~GG~l~~~~~----~~~~l~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  382 (514)
                      ++.- ...-+|-++.|.-| .+-..||+++.+.+    +...++...   .++.--.+++.-.+.++...|..--+..  
T Consensus       250 ~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~--  327 (471)
T COG3033         250 EIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFD--  327 (471)
T ss_pred             HHHHHHHhhhhhheeeccccceeccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcH--
Confidence            1000 01235777778877 34556899987654    444444321   1111011455555666555555332222  


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCccccCCCc-EEEEE-------eC-CCccHHHHHHHHHHhCCeEEecccCCCCCCC---
Q psy16848        383 ELRAKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIK-------IG-NPALNTKICDMLLKEKGHYVQPINYPTVPVG---  450 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~-------l~-~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~---  450 (514)
                       ..++..+..+||.+.|.+.|++++.+.|+ -+.+.       +| +...++.++..|.++.||.+.....+....+   
T Consensus       328 -yl~~Rv~Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~kt  406 (471)
T COG3033         328 -YLAHRVAQVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKT  406 (471)
T ss_pred             -HHHHHHHHHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCc
Confidence             44444556679999999999988766543 22222       12 1234678888888899998864221111111   


Q ss_pred             -------CcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCccCCcchhhHhHHHHHHHHHHH
Q psy16848        451 -------EEKIRLAPTP-FHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIILFHLI  505 (514)
Q Consensus       451 -------~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (514)
                             -..+|+.++. ..|.+.+|..++.++++.++-....+.---.+++++++|-|+..+
T Consensus       407 g~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~~ikgL~~v~ep~llRhFtA~l~p  469 (471)
T COG3033         407 GKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAEDIKGLEFVYEPKLLRHFTARLEP  469 (471)
T ss_pred             cccCCCchheeeEeccccccchhHHHHHHHHHHHHHhccccCCCceeecchhHHHHHHhhccc
Confidence                   2589998874 557899999999999998876544443334677778877666543

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.12  E-value=4.4e-09  Score=103.50  Aligned_cols=227  Identities=16%  Similarity=0.148  Sum_probs=121.9

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC-HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~-l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      |.+..++.+++. .+...+.++++.....+...| +.+|.++|++||++.++..||+.-...--. -+..... ....|+
T Consensus       140 d~~~ie~~i~~~-G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~-~i~~a~~-~GRvda  216 (389)
T PF05889_consen  140 DLEAIEAKIEEL-GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMH-LIQQAWR-VGRVDA  216 (389)
T ss_dssp             HHHHHHHHHHHH-CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHH-HHHHHHH-HSTCSE
T ss_pred             cHHHHHHHHHHh-CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHH-HHHHHHh-cCCcce
Confidence            345566666544 334577888888888888988 999999999999999999999861100000 0000000 013566


Q ss_pred             EEcCCcccc-cCCC-eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAF-GNIG-GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~l-g~~G-G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      ++.|..|.| -+.| +.+++. +..+..+...-.+-  ....|....   ...|..+.............+...++.+.|
T Consensus       217 ~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGR--as~sp~ld~---~itLl~LG~~g~~~ll~~r~~~f~~l~erl  291 (389)
T PF05889_consen  217 FVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGR--ASASPSLDL---FITLLSLGCTGYGALLKERKASFPYLKERL  291 (389)
T ss_dssp             EEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSH--BTSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhh--hhcccchHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            777888876 2235 444443 56777776543332  112222222   222222323344445555555555555555


Q ss_pred             Hh----CCCcccc-CCCc-EEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCC--------CcEEEEEeCC
Q psy16848        400 IQ----IGFPVEH-TPSH-IIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVG--------EEKIRLAPTP  460 (514)
Q Consensus       400 ~~----~g~~~~~-~~~~-~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~--------~~~iRl~~~~  460 (514)
                      ++    .+-.+.. |..+ .+.+.++.     ..+...+...|. .+||.-..+..+..+..        -.++-++...
T Consensus       292 ~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf-~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~Asai  370 (389)
T PF05889_consen  292 KKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLF-KRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAI  370 (389)
T ss_dssp             HHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHH-HTTEESSEEEETSSCEEETTSS--SSSEEEEEE-T
T ss_pred             HHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHH-hCCcccceeeccCCCcccccCCCCchHHHHHHHHh
Confidence            44    3433332 2333 34455542     123567888885 88776433222111111        2688888888


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~  479 (514)
                      .+++||+|.++++|+++++
T Consensus       371 G~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  371 GMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             T--HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.03  E-value=9.4e-08  Score=104.52  Aligned_cols=195  Identities=13%  Similarity=0.179  Sum_probs=126.7

Q ss_pred             CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEe-ccccccccCCCCCCccccCCCccCceEEEcCCc---ccc--c
Q psy16848        259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD-EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG---KAF--G  332 (514)
Q Consensus       259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~D-ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s---K~l--g  332 (514)
                      ++..+++.+|+ ..|.+.++++|.++++++|.++++- +.-+++.+.+        .+ ..++||++++..   =.+  |
T Consensus       208 ~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll~~--------Pg-e~GADI~vG~~Q~fGvp~~~G  277 (954)
T PRK12566        208 AVFGALLQYPD-THGEIRDLRPLIDQLHGQQALACVAADLLSLLVLTP--------PG-ELGADVVLGSTQRFGVPMGYG  277 (954)
T ss_pred             CEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCCCC--------hh-hcCCcEEeeCCCcCCCCCCCC
Confidence            47788888884 6699999999999999999986632 2223443322        22 558999987433   222  3


Q ss_pred             CCC-eEEEecHHHHHHHHhhcCceE----------e--------------ccC--CcHHHHHHHHHH-HHHhhhchHHHH
Q psy16848        333 NIG-GYIVGTKNFIDTIRSYAAGFI----------F--------------TTS--LPPTVLAGAREA-IRILSSQEGVEL  384 (514)
Q Consensus       333 ~~G-G~l~~~~~~~~~l~~~~~~~~----------~--------------~~~--~~~~~~~a~~~~-l~~~~~~~~~~~  384 (514)
                      ++. |++.+++++...+.-..-+.+          .              +.+  .+...++.+.+. +-++..+++.++
T Consensus       278 GP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~i  357 (954)
T PRK12566        278 GPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRI  357 (954)
T ss_pred             CCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            323 999999887766642211111          0              011  112222211111 123345677888


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccCCCcEE---EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        385 RAKHQDIVAYLRNELIQIGFPVEHTPSHII---PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      .++...+..++.+.|.+.|+++...  ++|   .+.+..  ...++.+... ++||-++..       +++.+.+++.-.
T Consensus       358 a~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~~--~~~~~~~~a~-~~~~n~r~~-------~~~~~~~s~de~  425 (954)
T PRK12566        358 AQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVGG--AQAAIIESAE-AARINLRIL-------GRGRLGVSLDET  425 (954)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEccC--CHHHHHHHHH-HCCCeeEEe-------CCCeEEEEeCCC
Confidence            8899999999999999998876543  332   344421  3678888885 899998732       245789999989


Q ss_pred             CCHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLL  475 (514)
Q Consensus       462 ~t~e~id~~~~~l~  475 (514)
                      +|.+|++.++..+.
T Consensus       426 ~~~~~~~~~~~~f~  439 (954)
T PRK12566        426 CDEATVARLFDIFL  439 (954)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999999884

>KOG2040|consensus

Probab=98.93  E-value=6e-08  Score=98.91  Aligned_cols=237  Identities=14%  Similarity=0.178  Sum_probs=150.9

Q ss_pred             hhCCCCEEEec-----CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC-HHHHHHHHHHcCCEEEEeccccccccC
Q psy16848        231 RNSSAPKIIYR-----HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-LKELCEVSHQHGALTFVDEVHAVGLYG  304 (514)
Q Consensus       231 ~~~g~~~~~v~-----~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~-l~~l~~l~~~~gv~li~Dea~~~g~~g  304 (514)
                      .++|.+++++.     .-|+..+.+..+++. ++.+++.++.|+.. |..-+ ++++.++.++||--+..|.+-.-...|
T Consensus       648 ~MagmkvvpV~~~~~G~id~~dLk~kaekh~-~~Laa~MvTYPST~-GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVG  725 (1001)
T KOG2040|consen  648 AMAGMKVVPVGCDANGNIDMVDLKAKAEKHK-DNLAALMVTYPSTH-GVFEEGIDDICDIIHEHGGQVYLDGANMNAQVG  725 (1001)
T ss_pred             HhcCCEEEEeeccCCCCccHHHHHHHHHHhh-hhhheeEEeccccc-ccccccHHHHHHHHHhcCCEEEecCCCccceec
Confidence            34455555555     225555555555442 34678888888655 55544 999999999999999999987633222


Q ss_pred             CCCCCccccCCCccCceEEEcCCcccccC------CC-eEEEecHHHHHHHHhhcCc----------e-Eecc--CCcHH
Q psy16848        305 EHGAGIGERDGQLHNMDIISGTLGKAFGN------IG-GYIVGTKNFIDTIRSYAAG----------F-IFTT--SLPPT  364 (514)
Q Consensus       305 ~~~~~~~~~~~~~~~~di~~~S~sK~lg~------~G-G~l~~~~~~~~~l~~~~~~----------~-~~~~--~~~~~  364 (514)
                           +....  +.+.|+.--.+||.|+.      +| |-+.+.+++...+....-.          . +.+.  .++..
T Consensus       726 -----lc~pG--d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~  798 (1001)
T KOG2040|consen  726 -----LCRPG--DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSAL  798 (1001)
T ss_pred             -----ccCCc--cccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcce
Confidence                 22222  33778888899999853      22 5566667776655422100          0 0000  12333


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCCc---EEEEEeC-----CCccHHHHHHHHHHhC
Q psy16848        365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPSH---IIPIKIG-----NPALNTKICDMLLKEK  435 (514)
Q Consensus       365 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---~~~i~l~-----~~~~~~~~~~~Ll~~~  435 (514)
                      .+....+-++.+...++...-+...-+++|+.++|+.. .+-+....+.   =|.+.+.     .+.++.+++++|+ +.
T Consensus       799 ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~-DY  877 (1001)
T KOG2040|consen  799 ILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLM-DY  877 (1001)
T ss_pred             eehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHH-hc
Confidence            33444455555555566666666778889999999987 4444444432   2223322     2456789999996 99


Q ss_pred             CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        436 GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       436 GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      |+.....++|.    .+.+.+-++-..+.+|+|+++++|-.+-+++
T Consensus       878 gFHaPTmswPV----~gtLMIEPTESE~k~ElDRfcdAliSIreEI  919 (1001)
T KOG2040|consen  878 GFHAPTMSWPV----AGTLMIEPTESEDKAELDRFCDALISIREEI  919 (1001)
T ss_pred             cCCCCcccccc----CCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence            99987777754    3478888887788899999999998876654

>KOG1412|consensus

Probab=98.89  E-value=7.9e-08  Score=90.15  Aligned_cols=219  Identities=13%  Similarity=0.129  Sum_probs=136.2

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecC-CCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCcc--ccCCCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG--ERDGQL  317 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~--~~~~~~  317 (514)
                      |++-+...|+.+...  ..+++..+ +||||.-+.   +.+|.+..++.+.+.+.|-+|.-...|...+...  .++...
T Consensus       164 d~e~~Lsdl~~APe~--si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~  241 (410)
T KOG1412|consen  164 DLEGFLSDLESAPEG--SIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQ  241 (410)
T ss_pred             cHHHHHHHHhhCCCC--cEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhc
Confidence            556666666665432  34455554 899999887   8999999999999999999998434443322111  111111


Q ss_pred             cCceEEEcCCcccccCCC---e---EEEecHHHHHH----HHhhcCceEeccCCcHHHHHHHHHHHHHh--h---hchHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---G---YIVGTKNFIDT----IRSYAAGFIFTTSLPPTVLAGAREAIRIL--S---SQEGV  382 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G---~l~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~---~~~~~  382 (514)
                      ...-+++-||+|.+|..+   |   +++-++..+..    +....+..  -.++|...+......|+..  .   ...+.
T Consensus       242 g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~--~SNPPAyGArIV~kvL~tP~lre~W~~sik  319 (410)
T KOG1412|consen  242 GFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSN--WSNPPAYGARIVHKVLSTPELREQWIQSIK  319 (410)
T ss_pred             CCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhc--cCCCcchhhHHHHHHhcCHHHHHHHHHHHH
Confidence            234688999999999855   3   33334444433    33222221  1134444555555555321  1   23456


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCc----cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        383 ELRAKHQDIVAYLRNELIQIGFP----VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~g~~----~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      .+..++++++..|++.|..++-+    -+..+.+||.+.    .....-++.|.+++.|++.+           .=|+++
T Consensus       320 ~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyT----GLtp~qV~~li~~h~vyLl~-----------~GRIni  384 (410)
T KOG1412|consen  320 TMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYT----GLTPAQVDHLIENHKVYLLS-----------DGRINI  384 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeec----CCCHHHHHHHHHhceEEEec-----------CCcEee
Confidence            77788899999999998887432    233355566654    11334567777788999862           126777


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      + ..+...+|...++|.+.++.+.
T Consensus       385 s-GLN~~NveyVAkAIde~Vr~~~  407 (410)
T KOG1412|consen  385 S-GLNMKNVEYVAKAIDETVRAIK  407 (410)
T ss_pred             e-ccccccHHHHHHHHHHHHHhhc
Confidence            6 4667889999999999988764

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.83  E-value=2.3e-08  Score=95.86  Aligned_cols=263  Identities=14%  Similarity=0.069  Sum_probs=147.1

Q ss_pred             cccccccCCCceeeecCchhhHHHHHhhccCC--------ceeeecchHHHHh----hCCCC-EEEec-CCChhHHHHHH
Q psy16848        187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNP--------EVAIHASMIQGIR----NSSAP-KIIYR-HNDVNHLTQVL  252 (514)
Q Consensus       187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~--------~v~~~~~~~~~~~----~~g~~-~~~v~-~~d~~~l~~~l  252 (514)
                      .+|.+-..|.-|+.+.|+++.+..++.+|..+        .|+...+|....+    ...-. ...-. ...+.      
T Consensus        58 ~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~Gda~~~~------  131 (363)
T PF04864_consen   58 VVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAGDASNFK------  131 (363)
T ss_dssp             HH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEEECCCGT------
T ss_pred             HhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccccccHHhhc------
Confidence            57777788889999999999999998887632        3444444433322    22211 11111 11121      


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                       ...+..+-+=++++||||.|.+-.  .   +++.-+..+|.|-+|.+..+-       ++.. ..+-||.++|+||.-|
T Consensus       132 -~~~~~~~~IElVTSPNNPDG~lr~--~---V~~g~~~k~I~D~AYYWPhyT-------pI~~-~aD~DiMLFT~SK~TG  197 (363)
T PF04864_consen  132 -NSDNPSPYIELVTSPNNPDGQLRE--A---VLNGSSGKVIHDLAYYWPHYT-------PITA-PADHDIMLFTLSKLTG  197 (363)
T ss_dssp             -T-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS----------S--B--SEEEEEHHHHCS
T ss_pred             -cCCCCCCeEEEEeCCCCCcccccc--h---hcCCCCcceeeeeeeeccccc-------ccCC-CCCCceEEEEEecccC
Confidence             111122345588999999998631  1   224445678999999855431       1221 3467999999999988


Q ss_pred             CCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh---------chHHHHHHHHHHHHHHHHHHH
Q psy16848        333 NIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS---------QEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       333 ~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      =.|   ||.+.+ +++.+.+..+..-.  +.+.+.-.+.-+.+.|+.+.+         .-..--++.++++-+.|.+.+
T Consensus       198 HAGSR~GWAlVKD~~Va~kM~~y~~ln--TiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~  275 (363)
T PF04864_consen  198 HAGSRFGWALVKDEEVAKKMTKYMELN--TIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAV  275 (363)
T ss_dssp             -GGG-EEEEEES-HHHHHHHHHHHHHH--CSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccceeeecCHHHHHHHHHHHHHh--cccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence            767   997665 56777766554332  335666666555665554421         112234566678888888888


Q ss_pred             HhC-CCcc--c------------cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        400 IQI-GFPV--E------------HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       400 ~~~-g~~~--~------------~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      ..- .+.+  .            .+...+-|++..... ..++...| ++.||..+.|..+..  +.+++|+|.-  .++
T Consensus       276 ~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee-d~DC~~~l-~~~~I~tr~G~~fga--~~ryVRlSml--~~~  349 (363)
T PF04864_consen  276 SASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE-DEDCYAVL-REAKIITRSGVLFGA--DSRYVRLSML--KRD  349 (363)
T ss_dssp             CCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG-GSSHHHHH-HCTTEEEEEGGGGTS---TTEEEEESS--S-H
T ss_pred             HhcCceecCcCCchhccccccccCCCCCeEEEecCCcc-cccHHHHH-HhCCcccCCCCccCC--CCCeEEEecc--CCH
Confidence            664 1111  1            112336677765432 24555556 699999999987543  4789999986  689


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        465 EMIDKFVTDLLAV  477 (514)
Q Consensus       465 e~id~~~~~l~~~  477 (514)
                      ++.+.++++|..+
T Consensus       350 d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  350 DDFDQLLERLSKL  362 (363)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998753

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG3846|consensus

Probab=98.74  E-value=1.7e-06  Score=81.19  Aligned_cols=214  Identities=21%  Similarity=0.236  Sum_probs=144.9

Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      .+.++.. .+..++|++..++..||...++.+|...-+..|.++=.|=+|++|-.        +..--+++.|+.+-+-.
T Consensus       205 Ld~IEkn-gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNV--------pL~LHdWgVDFACWCSY  275 (465)
T KOG3846|consen  205 LDTIEKN-GDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNV--------PLQLHDWGVDFACWCSY  275 (465)
T ss_pred             HHHHHhc-CCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCC--------ceEEeecCCceEEEeee
Confidence            3344333 34478899999999999999999999777778999999999997754        22223678999999999


Q ss_pred             ccccC-CC---eEEEecHHHHHHHHhhcCceE---------------------ec-cCCcHHHHHHHHHHHHHhhhchHH
Q psy16848        329 KAFGN-IG---GYIVGTKNFIDTIRSYAAGFI---------------------FT-TSLPPTVLAGAREAIRILSSQEGV  382 (514)
Q Consensus       329 K~lg~-~G---G~l~~~~~~~~~l~~~~~~~~---------------------~~-~~~~~~~~~a~~~~l~~~~~~~~~  382 (514)
                      |.++. .|   |..+-.+..-+...+....|+                     |- .++|-....++...|+.+.+-.+.
T Consensus       276 KYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~  355 (465)
T KOG3846|consen  276 KYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNIN  355 (465)
T ss_pred             cccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHH
Confidence            98843 23   555544444433333332221                     11 233455668888899988766677


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCc-----------cccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCC
Q psy16848        383 ELRAKHQDIVAYLRNELIQI-GFP-----------VEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYP  445 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~-g~~-----------~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~  445 (514)
                      +++.+..-+..|+...++.. |..           ++.|     +|-.+.+.+..+  ...+.+.|. ++|+.+.     
T Consensus       356 ~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp--~~~vfqeL~-krGv~~D-----  427 (465)
T KOG3846|consen  356 ELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP--TPKVFQELH-KRGVIGD-----  427 (465)
T ss_pred             HHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC--chHHHHHHH-HcCeecc-----
Confidence            77776665555555555443 221           1222     233555555543  467889994 9999975     


Q ss_pred             CCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        446 TVPVGEEKIRLAP-TPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       446 ~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                        .+.++.||+++ +.+++-.|+-.+++.|.+++..+
T Consensus       428 --kR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~  462 (465)
T KOG3846|consen  428 --KRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL  462 (465)
T ss_pred             --ccCCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence              45578999977 57889999999999999988765

>KOG1411|consensus

Probab=98.74  E-value=3.1e-07  Score=87.51  Aligned_cols=217  Identities=14%  Similarity=0.077  Sum_probs=128.9

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCc--cccCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI--GERDGQLH  318 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~--~~~~~~~~  318 (514)
                      |++-+.+.+.+.... ..+++-...|||||.-..   +++|.++.++.+.+-+.|.+|.-...|......  ...+..+.
T Consensus       184 d~~g~ledl~~~p~g-s~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g  262 (427)
T KOG1411|consen  184 DFKGMLEDLGEAPEG-SIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDG  262 (427)
T ss_pred             chHHHHHHHhcCCCC-cEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcC
Confidence            455555555555432 234444557899999877   799999999999999999999833333221111  00111123


Q ss_pred             CceEEEcCCcccccCCC---eE---EEecHHHHHHHH----hhcCceEeccCCcHHHHHHHHHHHHHh-----hhchHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GY---IVGTKNFIDTIR----SYAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEGVE  383 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~---l~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~  383 (514)
                      ...+++-||.|.+|..|   |.   ++.+++...+++    ...+++ |+ ++|......+...|...     ...++..
T Consensus       263 ~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpm-YS-nPP~hGArIv~~Il~d~~l~~~W~~evk~  340 (427)
T KOG1411|consen  263 HEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPM-YS-NPPLHGARIVATILSDPDLKNQWLGEVKG  340 (427)
T ss_pred             CceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhccc-cc-CCCccchhhhhhccCChHHHHHHHHHHHH
Confidence            45678889999999866   33   445566554443    223332 11 22222222223322211     1233566


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcc----ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        384 LRAKHQDIVAYLRNELIQIGFPV----EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       384 ~~~~~~~~~~~l~~~L~~~g~~~----~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      +.+++..+++.|.+.|+..|-+.    +..+-+||.+.-    -..+-.+.|.++..|+.+.           --|+|.+
T Consensus       341 MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTg----l~peQv~~l~ke~~iYmT~-----------dGRiS~a  405 (427)
T KOG1411|consen  341 MADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTG----LNPEQVDWLTKEYHIYLTK-----------DGRISMA  405 (427)
T ss_pred             HHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecC----CCHHHHHHHHhhheeeecc-----------CceEeec
Confidence            78888999999999998874332    334555776642    1345567777888999851           2377776


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~  479 (514)
                       ..+...++.+.++|-++..
T Consensus       406 -G~ss~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  406 -GLSSSNVPYLADAIHAVTK  424 (427)
T ss_pred             -cccccCCcccchhhHhHhc
Confidence             4556667777777766543

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.72  E-value=4.2e-06  Score=81.17  Aligned_cols=200  Identities=15%  Similarity=0.124  Sum_probs=136.8

Q ss_pred             eEEEEecCCCCCccccC-HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEE
Q psy16848        261 KLVAFETVHSMTGAICP-LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYI  338 (514)
Q Consensus       261 ~~vv~~~~~nptG~~~~-l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l  338 (514)
                      ..|.+++..+-+|.-++ .+.+.   .  +.++|.|..-.++..        +++  -...|++.++--|.+|+.| +++
T Consensus       146 ayv~~~~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~ilsr--------~iD--vsk~dviyagaQKnlGpaGltvv  210 (365)
T COG1932         146 AYVHFCWNETISGVEVPELPDIG---S--DGLLVADASSAILSR--------PID--VSKYDVIYAGAQKNLGPAGLTVV  210 (365)
T ss_pred             cEEEEecCCcccceEccCCCCCC---C--CceEEEecccHHhcC--------CCC--hhHcceEEEehhhccCccceEEE
Confidence            34666666666777766 12211   1  178999988875442        222  2367999999999999989 889


Q ss_pred             EecHHHHHHHHhhcCc--eEe-------c-c-CCcHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848        339 VGTKNFIDTIRSYAAG--FIF-------T-T-SLPPTVLAGAREAIRILSS-QEGVELRAKHQDIVAYLRNELIQIGFPV  406 (514)
Q Consensus       339 ~~~~~~~~~l~~~~~~--~~~-------~-~-~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~  406 (514)
                      +.+++++++++....+  +.+       + . ++|.........+++.+.. -+++.+.++.+++.+.|.+.+.+.++-.
T Consensus       211 Ivr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~  290 (365)
T COG1932         211 IVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYR  290 (365)
T ss_pred             EEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999988764111  100       1 1 3344555666667776654 3578899999999999999998874311


Q ss_pred             --cc--CCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        407 --EH--TPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       407 --~~--~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                        +.  .++. -++|.+.+......|.+.+. ++|+....|+.     ..+.+|.++.-.+..|+++.+++.|+++.++.
T Consensus       291 ~~v~~~~RS~mnV~f~~~~~~ld~~fv~eae-~~gl~~lkGhr-----~vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         291 NLVAKANRSRMNVTFTLVDAELDKGFVAEAE-AAGLIYLKGHR-----SVGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             cccchhhccceeEEEEcCcHHHHHHHHHHHH-HcCCceecccc-----CCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence              11  1222 34566666666678888884 77777765542     23459999998899999999999999987764

>KOG0628|consensus

Probab=98.69  E-value=2.6e-06  Score=84.37  Aligned_cols=196  Identities=13%  Similarity=0.071  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC----CC-----e-----EEEecH
Q psy16848        278 LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN----IG-----G-----YIVGTK  342 (514)
Q Consensus       278 l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~G-----G-----~l~~~~  342 (514)
                      +.+|..+|+++|+||++|.+|+-.+. .+..+.+  ..| ...+|-+-+..||++-.    ..     |     +.-+++
T Consensus       254 l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l--~rG-ie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp  330 (511)
T KOG0628|consen  254 LEELGPVCREEGLWLHVDAAYAGSAFICPEFRYL--MRG-IEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDP  330 (511)
T ss_pred             HHHhcchhhhcCEEEEeehhhccccccCHHHHHH--hhc-chhhccccCChhheeEEeeeeecceeecCceeeeeeecCh
Confidence            99999999999999999999993222 1111111  122 23467888888998643    11     1     112223


Q ss_pred             HHHHHHHhh-cCceEeccCCcHHH---HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC-CcEEEE
Q psy16848        343 NFIDTIRSY-AAGFIFTTSLPPTV---LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP-SHIIPI  416 (514)
Q Consensus       343 ~~~~~l~~~-~~~~~~~~~~~~~~---~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~i  416 (514)
                      -.++.-... ...+.+ ...+-..   ..-..-.++.+..+.+++..++..++++.+.+.+.+- .+++..+. -+++.+
T Consensus       331 ~yL~h~~~~~~~Dyrh-wqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcF  409 (511)
T KOG0628|consen  331 LYLKHAYQGSAPDYRH-WQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCF  409 (511)
T ss_pred             HhhcchhhccCCCccc-cccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEE
Confidence            222211111 111100 0111111   1111222333333344444444445555554444433 56655443 346777


Q ss_pred             EeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC-CHHHHHHHHHHHHHHHHHc
Q psy16848        417 KIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH-TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       417 ~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~-t~e~id~~~~~l~~~l~~~  481 (514)
                      ++.+ +...+.+.+++-....|.+.+...    .+.-.+|++++... +.+++++..+.|.+....+
T Consensus       410 Rlk~~N~~ne~Ll~~in~~g~i~l~~~~l----~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l  472 (511)
T KOG0628|consen  410 RLKGDNEINEALLNRLNSSGRIHLVPASL----HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL  472 (511)
T ss_pred             eecCCcHHHHHHHHHHHhcCcEEEEEeee----cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence            7753 455678888887666788877654    34668999997644 5578999999998887764

>KOG0629|consensus

Probab=98.63  E-value=2.4e-06  Score=83.77  Aligned_cols=211  Identities=15%  Similarity=0.163  Sum_probs=123.2

Q ss_pred             eEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccCCC--eE
Q psy16848        261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--GY  337 (514)
Q Consensus       261 ~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--G~  337 (514)
                      -++-.+.....-|..-|+..|+++|++|+.|+++|.+.+-|.+ .+..+.  ...+ ...++.|.-+.||.+|.+-  +.
T Consensus       255 f~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~--kl~G-iera~SvtwnpHK~~gaplqCsa  331 (510)
T KOG0629|consen  255 FFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH--KLTG-IERANSVTWNPHKLMGAPLQCSA  331 (510)
T ss_pred             eEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh--hccC-ccccCceeecHHHhhcCcchhhH
Confidence            3444555666779999999999999999999999999995443 222211  2344 3467888889999998733  43


Q ss_pred             EEe-cHHHHHHHHhhcCce----------EeccCCcHHHH------HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        338 IVG-TKNFIDTIRSYAAGF----------IFTTSLPPTVL------AGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       338 l~~-~~~~~~~l~~~~~~~----------~~~~~~~~~~~------~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      .+. .+.++++.......+          +++++--.+.+      .-..-.++.-...+.++..+++.++++|+.+.++
T Consensus       332 ~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lr  411 (510)
T KOG0629|consen  332 FLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLR  411 (510)
T ss_pred             HHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            333 344555544332221          12222111111      1122233333345678889999999999999999


Q ss_pred             hC-CCccc-cC-CCc-EEEEEe-CC--------C-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC-
Q psy16848        401 QI-GFPVE-HT-PSH-IIPIKI-GN--------P-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT-  459 (514)
Q Consensus       401 ~~-g~~~~-~~-~~~-~~~i~l-~~--------~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~-  459 (514)
                      +. ++..+ .. +.. -+.+.. |.        .       ..+..+-..++ ++|-.....+..  ...++++|+.++ 
T Consensus       412 er~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm-~~Gt~Mi~YqPl--~~~~nffr~v~sn  488 (510)
T KOG0629|consen  412 EREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMM-KKGTTMIGYQPL--GDKPNFFRMVISN  488 (510)
T ss_pred             hcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHH-hccceeeEeccc--ccccchhheeccc
Confidence            98 33322 21 111 111211 11        0       12234555665 677655432221  122568887664 


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~  477 (514)
                      ...+.+|++.+++.|..+
T Consensus       489 ~a~~~ad~dflldEIerl  506 (510)
T KOG0629|consen  489 PALTEADLDFLLDEIERL  506 (510)
T ss_pred             chhhhhhHHHHHHHHHHh
Confidence            245788999999888764

>KOG1360|consensus

Probab=98.61  E-value=3.8e-07  Score=88.33  Aligned_cols=83  Identities=67%  Similarity=1.165  Sum_probs=78.2

Q ss_pred             chHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccC
Q psy16848        225 SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG  304 (514)
Q Consensus       225 ~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g  304 (514)
                      +....++..+++-..+..||.+.+++.|.+.....+|+|.++++++++|.+.|+++|.+++++||++-++||+|+.|.+|
T Consensus       269 SMI~GIrns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG  348 (570)
T KOG1360|consen  269 SMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYG  348 (570)
T ss_pred             HHHHHhhhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhcccc
Confidence            67888889999999999999999999999998888999999999999999999999999999999999999999999888


Q ss_pred             CCC
Q psy16848        305 EHG  307 (514)
Q Consensus       305 ~~~  307 (514)
                      ..|
T Consensus       349 ~rG  351 (570)
T KOG1360|consen  349 PRG  351 (570)
T ss_pred             CCC
Confidence            766

>PLN02955 8-amino-7-oxononanoate synthase

Probab=97.75  E-value=1.1e-05  Score=83.29  Aligned_cols=67  Identities=30%  Similarity=0.543  Sum_probs=57.3

Q ss_pred             EEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        151 VAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                      |++||+|+|+|+++|++++.++++++|+.+++|++|+.|+.|.+|.|+.+..|....+++++.+|-+
T Consensus       253 Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsK  319 (476)
T PLN02955        253 VVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSK  319 (476)
T ss_pred             EEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCcc
Confidence            6789999999999999999999999999999999999999999999987776655555555555543

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.0044  Score=62.46  Aligned_cols=188  Identities=15%  Similarity=0.116  Sum_probs=128.4

Q ss_pred             eeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-CC-cEEEEeccccc-cccchh
Q psy16848         19 VTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-KE-AGLVFTSCYVA-NDSTLF   93 (514)
Q Consensus        19 ~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~-~~i~~~sGt~a-~~~~l~   93 (514)
                      ..+|++++...  ..|.+.+++.+.+..+.      ++..   ....++++.+++++| .+ ..++..+|+.. +..+++
T Consensus        23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~------rYPd---~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~   93 (356)
T COG0079          23 GIIKLSSNENPYGPPPKVIEAIRAALDKLN------RYPD---PDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR   93 (356)
T ss_pred             cceeecCCCCCCCCCHHHHHHHHHHHHhhc------cCCC---CcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence            47888765533  35788888888776421      1111   246789999999998 44 45666677665 666666


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCC----ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHN----DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      +++.  +||.|++..++|...-..++..|++++.++..    |.+.+...+.+    +++++.+.+=---+|.+-+..++
T Consensus        94 ~~~~--~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~----~~~lv~i~nPNNPTG~~~~~~~l  167 (356)
T COG0079          94 AFVE--PGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRD----KTKLVFLCNPNNPTGTLLPREEL  167 (356)
T ss_pred             Hhhc--CCCEEEEcCCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhhc----CCCEEEEeCCCCCCCCCCCHHHH
Confidence            6665  99999999999999999999999999988774    33444433333    56666664333356999999999


Q ss_pred             hhhhhhc--CceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc-CC-ceeeecchHHHHhhCCCCEEE
Q psy16848        170 CEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV-NP-EVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       170 ~~~~~~~--~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~-~~-~v~~~~~~~~~~~~~g~~~~~  239 (514)
                      +.+.+..  +..+.+|++...=..   .          ..     ..++ .+ .+++-.++.+.+.+.|.++=+
T Consensus       168 ~~l~~~~~~~~~vVvDEAY~eF~~---~----------~~-----~~l~~~~~nlivlRTfSKa~gLAGlRlGy  223 (356)
T COG0079         168 RALLEALPEGGLVVIDEAYIEFSP---E----------SS-----LELLKYPPNLIVLRTFSKAFGLAGLRVGY  223 (356)
T ss_pred             HHHHHhCCCCcEEEEeCchhhcCC---c----------hh-----hhhccCCCCEEEEEecHHhhhcchhceee
Confidence            9999865  679999997642111   0          00     1111 23 577777888888888887655

>KOG1357|consensus

Probab=97.38  E-value=0.00013  Score=72.48  Aligned_cols=71  Identities=31%  Similarity=0.531  Sum_probs=64.6

Q ss_pred             CCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecC-chhhHHHHHhhccC
Q psy16848        147 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG-QLHNMDIISGTLVN  217 (514)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G-~~~~i~~~~~~l~~  217 (514)
                      ++-+|..+|.|+|+|.++.++++.++++++.+++++|++|+.|..|++|.||++.+| ..+.++++|+++.+
T Consensus       276 kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftK  347 (519)
T KOG1357|consen  276 KKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTK  347 (519)
T ss_pred             hheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehh
Confidence            344777889999999999999999999999999999999999999999999999999 66778888888865

>KOG2040|consensus

Probab=97.20  E-value=0.025  Score=59.07  Aligned_cols=196  Identities=14%  Similarity=0.218  Sum_probs=119.3

Q ss_pred             ceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEe-ccccccccCCCCCCccccCCCccCceEEEcCCccc---ccCCC
Q psy16848        260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD-EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA---FGNIG  335 (514)
Q Consensus       260 ~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~D-ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~---lg~~G  335 (514)
                      ...+++..|. .-|.+.+..++++.+++.|.++++- |-.++-.+-        ..+ ..++||+++|.-..   +|-.|
T Consensus       248 v~gvlvQYP~-t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLr--------pPg-efGaDIavGSsQRFGVPlGYGG  317 (1001)
T KOG2040|consen  248 VSGVLVQYPD-TEGSVLDFDELVELAHANGSLVVMATDLLALTILR--------PPG-EFGADIAVGSSQRFGVPLGYGG  317 (1001)
T ss_pred             eeEEEEEcCC-CCCcccCHHHHHHHhhccCceEEEeehhhHHHccC--------Chh-hcCceeeeccccccCccccCCC
Confidence            5567777764 4599999999999999999887753 223222221        122 45789999987653   33323


Q ss_pred             ---eEEEecHHHHHHHHhhcCceEec----------------------cCCcHHHHHHHHHHHH-----HhhhchHHHHH
Q psy16848        336 ---GYIVGTKNFIDTIRSYAAGFIFT----------------------TSLPPTVLAGAREAIR-----ILSSQEGVELR  385 (514)
Q Consensus       336 ---G~l~~~~~~~~~l~~~~~~~~~~----------------------~~~~~~~~~a~~~~l~-----~~~~~~~~~~~  385 (514)
                         ||+.+++.+...+.-..-+.+-+                      .+.+-=.+.|+++.+.     +...++++++.
T Consensus       318 PHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IA  397 (1001)
T KOG2040|consen  318 PHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIA  397 (1001)
T ss_pred             chHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence               66555554443332111111101                      0111111222222222     11245678888


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        386 AKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      +++......|...|+..|.+++... -..+.+++..  ...++.++.. +++|-++-.       .++.+-+++--..++
T Consensus       398 rrvh~~T~~l~~~l~~aghel~~k~fFDTLkI~~~~--s~~~~l~rA~-~~~iNlr~~-------ed~tigvslDETv~~  467 (1001)
T KOG2040|consen  398 RRVHNLTLILAEGLKNAGHELQHKPFFDTLKIRCGC--SAEEVLDRAA-KRQINLRLV-------EDGTIGVSLDETVTE  467 (1001)
T ss_pred             HHHHHHHHHHHHHHhhcchhhccccccceEEEEecC--cHHHHHHHHH-hhcCceEEe-------ecCceEEeecccccH
Confidence            8999999999999998876654332 1134466654  4778888885 777777632       245688888888899


Q ss_pred             HHHHHHHHHHH
Q psy16848        465 EMIDKFVTDLL  475 (514)
Q Consensus       465 e~id~~~~~l~  475 (514)
                      +|++.++..+.
T Consensus       468 ~DvddLl~vf~  478 (1001)
T KOG2040|consen  468 KDVDDLLWVFN  478 (1001)
T ss_pred             HHHHHHHHHHc
Confidence            99999998886

>KOG2790|consensus

Probab=96.90  E-value=0.13  Score=48.65  Aligned_cols=176  Identities=13%  Similarity=0.098  Sum_probs=112.9

Q ss_pred             cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEEEecHHHHHHHHhhcCce-----------
Q psy16848        288 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGF-----------  355 (514)
Q Consensus       288 ~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-----------  355 (514)
                      +|+++|.|-..-+...        +.+.  ...++++..--|.+|+.| -.++.+++++..........           
T Consensus       174 ~~~vlVaDmSSnflSr--------pvDv--sk~gvi~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP~v~dyk~~~~NnS  243 (370)
T KOG2790|consen  174 KGAVLVADMSSNFLSR--------PVDV--SKFGVIFAGAQKNVGPAGVTVVIVRKDLLGNALDITPSVLDYKIMDKNNS  243 (370)
T ss_pred             CCceEEEecccchhcC--------Cccc--hhcceEEeccccccCccccEEEEEehhhhcccccCCccccceeeeccccc
Confidence            5788888877653321        1222  245677778899999988 66777888776554332211           


Q ss_pred             EeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhC-CCccc---cC-CCc-EEEEEeCCCccHHHHH
Q psy16848        356 IFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQI-GFPVE---HT-PSH-IIPIKIGNPALNTKIC  428 (514)
Q Consensus       356 ~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~-~~~-~~~i~l~~~~~~~~~~  428 (514)
                      .|+ ++|...+.++.-.++.+.+. ++.++.+...+....+.+.+.+. |+-..   +. ++- -+.+++.+.....+|.
T Consensus       244 lyN-TpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~Le~eFL  322 (370)
T KOG2790|consen  244 LYN-TPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDELEAEFL  322 (370)
T ss_pred             ccc-CCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecchHHHHHHH
Confidence            011 33445556666667766544 46677777788889999999887 54321   11 121 2446666555566777


Q ss_pred             HHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        429 DMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       429 ~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +... ++++.-..|+.     .-+.+|-|+--.++-++++++++.|+++.+.
T Consensus       323 keA~-~~~mv~LKGhR-----SVGGiRASlYNAisv~~~q~L~~~m~~F~k~  368 (370)
T KOG2790|consen  323 KEAA-KEHMVQLKGHR-----SVGGIRASLYNAISVEEVQKLAAFMKEFQKK  368 (370)
T ss_pred             HHHH-Hhhhhcccccc-----ccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence            7775 55655443433     2457899988788999999999999988654

>KOG3843|consensus

Probab=96.62  E-value=0.027  Score=52.46  Aligned_cols=106  Identities=19%  Similarity=0.279  Sum_probs=61.4

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC-HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccC-C-CccCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD-G-QLHNM  320 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~-l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~-~-~~~~~  320 (514)
                      |++.+++.+++..++ ..+.+....+--.-..++ +++|..+|..|+++-|+..+|++-....    +.... + .-...
T Consensus       142 dleav~~~iee~g~d-cilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~----i~~iaa~~~~gri  216 (432)
T KOG3843|consen  142 DLEAVEAIIEELGED-CILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEEC----IHKIAAAAECGRI  216 (432)
T ss_pred             hHHHHHHHHHHhCCc-eEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHH----HHHHHHHhhhccH
Confidence            566667777666543 222232222212223333 9999999999999999999998432100    00000 0 01246


Q ss_pred             eEEEcCCcccccC-CCeEEEe--cHHHHHHHHhhcCc
Q psy16848        321 DIISGTLGKAFGN-IGGYIVG--TKNFIDTIRSYAAG  354 (514)
Q Consensus       321 di~~~S~sK~lg~-~GG~l~~--~~~~~~~l~~~~~~  354 (514)
                      |.++-|+-|.|-. -||+++.  ...+++.+.+...+
T Consensus       217 da~vqsldknf~vpvggaiia~fk~n~iq~iak~ypg  253 (432)
T KOG3843|consen  217 DAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAKMYPG  253 (432)
T ss_pred             HHHHHHhhhcceeecchhHhhHhHHHHHHHHHHhCCC
Confidence            7788899998853 4555543  45677777665444

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=96.61  E-value=0.01  Score=59.40  Aligned_cols=119  Identities=16%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhHcCCCc-EEEEecccc-ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         61 FHEKLEEDVAKLHQKEA-GLVFTSCYV-ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        61 ~~~~~~~~la~~~~~~~-~i~~~sGt~-a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      ...++++.+++++|.+. .|++++|++ ++..++. +..  +|+ |++..++|......++..|++++.++.++.+...+
T Consensus        41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~--~~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~~~~~~~  116 (332)
T PRK06425         41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YIN--VGN-IIIVEPNFNEYKGYAFTHGIRISALPFNLINNNPE  116 (332)
T ss_pred             CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhC--CCc-EEEeCCChHHHHHHHHHcCCeEEEEeCCcccCcHH
Confidence            36899999999998643 466666665 5555554 444  776 44558999999999999999999877532211123


Q ss_pred             HHHhcccCCCcEEEeecccc-ccCCccchhHHhhh---hhhcCceEEeecccc
Q psy16848        139 VLENMDVKIPKLVAFETVHS-MTGAICPLKELCEV---SHQHGALTFVDEVHA  187 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  187 (514)
                      .+++   .+++++++. ..+ -+|...+..++.++   +++++..+++|+...
T Consensus       117 ~l~~---~~~k~v~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~  165 (332)
T PRK06425        117 ILNN---YNFDLIFIV-SPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFI  165 (332)
T ss_pred             HHhh---cCCCEEEEe-CCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchh
Confidence            3332   256776665 444 44787786665554   577899999998754

>PLN02822 serine palmitoyltransferase

Probab=96.33  E-value=0.032  Score=58.90  Aligned_cols=53  Identities=25%  Similarity=0.532  Sum_probs=49.1

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceee
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE  200 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~  200 (514)
                      .++|++++.|+++|+++|++++.++++++|..+.+|+.|+.|++|.+|.|+.+
T Consensus       246 ~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e  298 (481)
T PLN02822        246 RRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSE  298 (481)
T ss_pred             cEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHH
Confidence            37999999999999999999999999999999999999999999988888544

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=96.02  E-value=0.058  Score=56.01  Aligned_cols=64  Identities=22%  Similarity=0.391  Sum_probs=55.2

Q ss_pred             eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh----HHhhhhhhcCceEEeeccccccc
Q psy16848        125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK----ELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       125 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      ...++++|.+++++.+.+.. .+...|+++.++.+.|++.|.+    .++++|+++|+.+.+|+.| .|.
T Consensus       180 ~~~~~~~d~~~l~~~l~~~~-~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~-tG~  247 (433)
T PRK00615        180 TLSLPYNDFQIFQTVMNSLG-HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV-TGF  247 (433)
T ss_pred             eEeCCCCCHHHHHHHHHhcC-CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-ccc
Confidence            35567889999999997654 4567899999999999999977    9999999999999999999 466

>KOG1358|consensus

Probab=95.76  E-value=0.0066  Score=59.61  Aligned_cols=69  Identities=26%  Similarity=0.536  Sum_probs=61.5

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCch-hhHHHHHhhcc
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLV  216 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~-~~i~~~~~~l~  216 (514)
                      .+.|..+|.|.-+|+++|++++.+++.++...+.+|+..+.|+.|.+|+|+.+-.|.. ..+|++.+++-
T Consensus       234 Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~  303 (467)
T KOG1358|consen  234 RRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASME  303 (467)
T ss_pred             eEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccc
Confidence            4689999999999999999999999999999999999999999999999998887754 66676666654

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=95.54  E-value=0.2  Score=52.14  Aligned_cols=118  Identities=16%  Similarity=0.179  Sum_probs=75.4

Q ss_pred             HHHHHHHHhHc----CCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         63 EKLEEDVAKLH----QKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        63 ~~~~~~la~~~----~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..=++++.+    |..+.+.+.++.++......++..   .+       .+..   ........+..++.+|.+.+++
T Consensus       147 ~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~---~~-------~~~~---~~~p~~~~~~~~p~~d~~~~~~  213 (442)
T TIGR03372       147 VEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATA---KP-------AFRK---PFMPLLPGFHHVAFGDIEAMLK  213 (442)
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccC---Cc-------ccCC---CCCCCCCCCEEeCCCCHHHHHH
Confidence            44445566654    566677788888875543333321   00       0000   0000112234456668888888


Q ss_pred             HHHhc--ccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccccccCC
Q psy16848        139 VLENM--DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHG  195 (514)
Q Consensus       139 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  195 (514)
                      .+.+.  ...+...++++.++...|...|    +++++++|+++|+.+.+|+.+. | .|++|
T Consensus       214 ~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G-~GRtG  274 (442)
T TIGR03372       214 ALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQT-G-MGRTG  274 (442)
T ss_pred             HHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeccc-C-CCccc
Confidence            88642  2245678889999999999999    8999999999999999999983 5 44444

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=95.47  E-value=0.0073  Score=62.38  Aligned_cols=50  Identities=56%  Similarity=1.075  Sum_probs=46.5

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      +++|+++++|.++|++.|+.++.++++++|+.+.+|++|+.|..|+.|.|
T Consensus       179 ~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g  228 (407)
T PRK09064        179 PKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGG  228 (407)
T ss_pred             CeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCC
Confidence            57899999999999999999999999999999999999999988877766

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=95.41  E-value=0.12  Score=53.19  Aligned_cols=104  Identities=22%  Similarity=0.270  Sum_probs=69.9

Q ss_pred             CCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEe
Q psy16848         74 QKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF  153 (514)
Q Consensus        74 ~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~  153 (514)
                      +..+.+.+.++.++.......+..    ...      +.   .........+..++++|.+++++.+.    .+.+.|++
T Consensus       123 ~r~~ii~~~~~yHG~~~~~~~~~~----~~~------~~---~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~aavi~  185 (397)
T TIGR03246       123 DKSEIVAFKNSFHGRTLFTVSVGG----QPK------YS---QGFAPLPGGIKHAPYNDLAAAKALIS----DKTCAVIV  185 (397)
T ss_pred             CCCEEEEECCCcCCccHHHHHhcC----Ccc------cc---cCCCCCCCceEEeCCCCHHHHHHHhc----cCeEEEEE
Confidence            556678788888885433222221    100      00   00011122456678889999998885    34678999


Q ss_pred             eccccccC----CccchhHHhhhhhhcCceEEeeccccccccccCCC
Q psy16848        154 ETVHSMTG----AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGA  196 (514)
Q Consensus       154 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  196 (514)
                      +..+.+.|    +...+.+++++|+++|+.+.+|+.| .|. |..|.
T Consensus       186 Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~-Gr~G~  230 (397)
T TIGR03246       186 EPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGV-GRTGE  230 (397)
T ss_pred             ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcC-Ccccc
Confidence            99998888    4566899999999999999999999 677 55554

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=95.39  E-value=0.0093  Score=61.49  Aligned_cols=51  Identities=59%  Similarity=1.131  Sum_probs=47.0

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCce
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI  198 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~  198 (514)
                      +++|++++.+.++|.+.|.+++.++++++|+.+.+|++|+.|++|+.|.|+
T Consensus       178 ~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~  228 (402)
T TIGR01821       178 PKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGI  228 (402)
T ss_pred             CeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCcc
Confidence            478899999999999999999999999999999999999999988877664

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=95.28  E-value=0.023  Score=58.30  Aligned_cols=57  Identities=26%  Similarity=0.416  Sum_probs=50.4

Q ss_pred             CCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeec
Q psy16848        146 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD  202 (514)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~  202 (514)
                      .++++|++++.+.++|.+.|+++++++++++|..+.+|+.|+.|..|.+|.|..+.+
T Consensus       137 ~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~  193 (392)
T PLN03227        137 DQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHA  193 (392)
T ss_pred             CCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHc
Confidence            457899999999999999999999999999999999999999998888777754433

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=95.18  E-value=0.011  Score=61.17  Aligned_cols=51  Identities=65%  Similarity=1.186  Sum_probs=47.1

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCce
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI  198 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~  198 (514)
                      +++|+++++++++|.+.|.+++.++++++|+.+.+|+.|+.|++|+.|.|.
T Consensus       178 ~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~  228 (406)
T PRK13393        178 PKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI  228 (406)
T ss_pred             CEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCch
Confidence            468899999999999999999999999999999999999999998877764

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=94.80  E-value=0.34  Score=49.82  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=68.4

Q ss_pred             HHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCC
Q psy16848         69 VAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP  148 (514)
Q Consensus        69 la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  148 (514)
                      ++...|.++.+.+..+.++.......+.    |....         .......+.++..++++|.+.+++.+.    .+.
T Consensus       122 ~~~~~g~~~ii~~~~~yhg~~~~~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~  184 (398)
T PRK03244        122 LARLTGRTKIVAAEGGFHGRTMGALALT----GQPAK---------RAPFEPLPGGVEHVPYGDVDALAAAVD----DDT  184 (398)
T ss_pred             HHHHHCCCeEEEECCCcCCccHHHHhcc----CCccc---------ccCCCCCCCCceEeCCCCHHHHHHhhc----CCe
Confidence            3344676677777667776543332221    11100         001111234556677778999988773    356


Q ss_pred             cEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        149 KLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       149 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      +.++++..+..+|...|    +.++.++++++|+.+.+|+.+.
T Consensus       185 ~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~  227 (398)
T PRK03244        185 AAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT  227 (398)
T ss_pred             EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            88888999888899888    7799999999999999999885

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=94.72  E-value=0.37  Score=50.50  Aligned_cols=69  Identities=23%  Similarity=0.384  Sum_probs=54.1

Q ss_pred             eeccCCChHHHHHHHHhcc--cCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccccccCCC
Q psy16848        126 IIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGA  196 (514)
Q Consensus       126 ~~~~~~d~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  196 (514)
                      ..++.+|.+++++.+.+..  ..+...++++.++.+.|.+.|    +..++++|+++|+.+.+|+.|. | .|++|.
T Consensus       208 ~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G-~GRtG~  282 (459)
T PRK11522        208 RHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-G-MGRTGK  282 (459)
T ss_pred             cccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-c-CCccch
Confidence            3455668889998887532  234568899999999999998    8899999999999999999984 5 355443

>PLN02483 serine palmitoyltransferase

Probab=94.71  E-value=0.018  Score=60.86  Aligned_cols=53  Identities=34%  Similarity=0.642  Sum_probs=47.5

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceee
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE  200 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~  200 (514)
                      +.+|+++++|+++|++++++++.++++++|+.+++|++|+.|..|.+|.|+.+
T Consensus       241 k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~  293 (489)
T PLN02483        241 KIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCE  293 (489)
T ss_pred             eEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHH
Confidence            34888999999999999999999999999999999999999888887777443

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=94.38  E-value=0.039  Score=48.36  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=41.0

Q ss_pred             ccCcchHHHHHHHHHHhHcC--C---CcEEEEec-cccccccchhhccccCCCceEEecCccch
Q psy16848         55 ISGNSLFHEKLEEDVAKLHQ--K---EAGLVFTS-CYVANDSTLFTLGKMIPGLHYISDAGNHA  112 (514)
Q Consensus        55 ~~~~~~~~~~~~~~la~~~~--~---~~~i~~~s-Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~  112 (514)
                      ..|..++.+++.+.+.+.+|  .   +..|++++ +++++..++.+++.  |||.|+++.++|.
T Consensus        91 ~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--pGD~VlVp~P~Y~  152 (153)
T PLN02994         91 YHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--PGDAFLVPTPYYA  152 (153)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--CCCEEEEeCCCCC
Confidence            34667888888888888766  1   12344555 55677888888876  9999999999885

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=94.24  E-value=0.025  Score=58.42  Aligned_cols=52  Identities=58%  Similarity=1.052  Sum_probs=47.4

Q ss_pred             CCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCce
Q psy16848        147 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI  198 (514)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~  198 (514)
                      ++++|++++.+.++|.+.|+.++.++++++|+.+.+|++|+.|..|..|.|+
T Consensus       178 ~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~  229 (410)
T PRK13392        178 RPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGI  229 (410)
T ss_pred             CCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCch
Confidence            5689999999999999999999999999999999999999999888766663

>KOG1359|consensus

Probab=94.13  E-value=0.037  Score=52.40  Aligned_cols=32  Identities=44%  Similarity=0.753  Sum_probs=24.8

Q ss_pred             ccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                      |++|..|.+|.|..+..|.-+.+++.-.+|-+
T Consensus       232 HaTgf~G~tGrGt~E~~~vm~~vdiinsTLgK  263 (417)
T KOG1359|consen  232 HATGFFGETGRGTAEEFGVMGDVDIINSTLGK  263 (417)
T ss_pred             ccceeecCCCCChHHHhCCCCcceehhhhhhh
Confidence            57899999999999888876666666666644

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=93.94  E-value=0.4  Score=49.40  Aligned_cols=99  Identities=23%  Similarity=0.332  Sum_probs=67.9

Q ss_pred             CCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEe
Q psy16848         74 QKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF  153 (514)
Q Consensus        74 ~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~  153 (514)
                      +....+++..+.++.......+..    .         .....++......+..++++|.+++++.+.    .+.+.|++
T Consensus       128 ~~~~ii~~~~~~HG~~~~~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~aaiii  190 (403)
T PRK05093        128 EKTEIIAFHNSFHGRTLFTVSVGG----Q---------PKYSDGFGPKPADITHVPFNDLAAVKAVID----DHTCAVVV  190 (403)
T ss_pred             CCCeEEEEcCCcCCchhhhHhhcC----C---------hhhhhcCCCCCCCcEEeCCCCHHHHHHHhc----CCeEEEEE
Confidence            355677778788875432222211    1         001112222334567788889999998884    35788999


Q ss_pred             eccccccCCccc----hhHHhhhhhhcCceEEeeccccccc
Q psy16848        154 ETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       154 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      +.++++.|...|    +.+++++|+++|..+.+|+.+. |.
T Consensus       191 ep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~  230 (403)
T PRK05093        191 EPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GM  230 (403)
T ss_pred             ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CC
Confidence            999988887655    8899999999999999999987 53

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=93.66  E-value=0.12  Score=52.55  Aligned_cols=69  Identities=23%  Similarity=0.300  Sum_probs=57.4

Q ss_pred             hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      +..|.++..++.+|++++++.+..    ++++|.++..+..+|.+.+.+++.++++++|+.+.+|+.|+.++.
T Consensus       101 ~~~g~~~~~v~~~d~~~l~~~i~~----~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~  169 (369)
T cd00614         101 PKLGIEVTFVDPDDPEALEAAIKP----ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL  169 (369)
T ss_pred             hhcCeEEEEeCCCCHHHHHHhcCC----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence            344666777777788888877743    578999999888899999999999999999999999999887654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=93.64  E-value=0.67  Score=48.75  Aligned_cols=116  Identities=22%  Similarity=0.355  Sum_probs=74.6

Q ss_pred             HHHHh-HcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhccc
Q psy16848         67 EDVAK-LHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  145 (514)
Q Consensus        67 ~~la~-~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  145 (514)
                      -++++ +.|.++.+.+.++.++....+.+...  .+.. ....+....+.   ......+..++++|.+++++.+.+.. 
T Consensus       172 lklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~--~~~~-~~~~~~~~g~~---~~~~~~~~~~~~nd~~~l~~~l~~~~-  244 (474)
T PLN02482        172 LRLARAYTGREKIIKFEGCYHGHADSFLVKAG--SGVA-TLGLPDSPGVP---KAATSATLTAPYNDLEAVKKLFEANK-  244 (474)
T ss_pred             HHHHHHhcCCCEEEEECCccCCCcchhhhhcC--CCcc-ccCCCCCCCCC---CCCCCCeEEecCCChHHHHHHHHhCC-
Confidence            34444 45788888888888885433222211  1100 00000000000   01112456678889999999997643 


Q ss_pred             CCCcEEEeeccccccCCccchh----HHhhhhhhcCceEEeeccccccc
Q psy16848        146 KIPKLVAFETVHSMTGAICPLK----ELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      .....|+++.++.+.|.+.|.+    .++++|+++|+.+.+|+.| .|.
T Consensus       245 ~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGf  292 (474)
T PLN02482        245 GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGF  292 (474)
T ss_pred             CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCe
Confidence            4567889999999999998866    6999999999999999998 566

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=93.42  E-value=0.53  Score=47.82  Aligned_cols=61  Identities=41%  Similarity=0.561  Sum_probs=42.5

Q ss_pred             ecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC--CceEEEEecCCCCCccccCHHHHHHHHH
Q psy16848        223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK--IPKLVAFETVHSMTGAICPLKELCEVSH  286 (514)
Q Consensus       223 ~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~--~~~~vv~~~~~nptG~~~~l~~l~~l~~  286 (514)
                      |.+....+++.+++.+.+.++|++.+++.+++....  +.++|+++.+.++.|   ++..|.+++.
T Consensus       133 HASiidG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdG---diApL~~l~~  195 (388)
T COG0156         133 HASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDG---DIAPLPELVE  195 (388)
T ss_pred             hhhHHHHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCC---CcCCHHHHHH
Confidence            337789999999999999999999999999884321  345566665554433   3444444444

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=93.29  E-value=1.2  Score=46.50  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=47.8

Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|++.+......+...|+++.++.+.|.+.|    +..++++|+++|+.+.+|+.|.
T Consensus       201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~t  259 (442)
T PRK13360        201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVIT  259 (442)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            457888887655556778999999999999999    9999999999999999999984

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=92.89  E-value=1.7  Score=45.41  Aligned_cols=55  Identities=27%  Similarity=0.446  Sum_probs=47.2

Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .+++++.+.+....+...++++.++...|.+.|    +.+++++|+++|+.+.+|+.+.
T Consensus       204 ~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t  262 (445)
T PRK09221        204 ADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT  262 (445)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh
Confidence            357778887655556778999999999999999    9999999999999999999885

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=92.87  E-value=0.22  Score=51.34  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=60.7

Q ss_pred             hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccc
Q psy16848        115 IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG  192 (514)
Q Consensus       115 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  192 (514)
                      ...++..|.+++.++..|++++++.+..    +.++|.++.....+|.+.+..++.++++++|+.+.+|.+++.+...
T Consensus       127 ~~~~~~~G~~v~~vd~~d~~~l~~ai~~----~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~  200 (403)
T PRK07810        127 NEILPRWGVETVFVDGEDLSQWEEALSV----PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQ  200 (403)
T ss_pred             HHHHHHcCcEEEEECCCCHHHHHHhcCc----CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccC
Confidence            3344556777777777788989888753    4688999988888999999999999999999999999998876553

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=92.76  E-value=0.11  Score=52.79  Aligned_cols=50  Identities=32%  Similarity=0.624  Sum_probs=45.3

Q ss_pred             cEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCce
Q psy16848        149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI  198 (514)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~  198 (514)
                      ++|+++++++++|.+.|.+++.++++++|+.+.+|++|+.|..+..+.|.
T Consensus       145 ~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~  194 (370)
T PRK05937        145 IFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF  194 (370)
T ss_pred             EEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCch
Confidence            46778999999999999999999999999999999999999888777653

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=92.46  E-value=0.76  Score=47.26  Aligned_cols=132  Identities=23%  Similarity=0.318  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhCCCCC-C-cCcccCcchHHHHHHHHHHhHcCCCcEEEEecc-ccccccchhhccccCCCceEEecCcc
Q psy16848         34 GRKCLGEALEKFGTGAG-G-TRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSC-YVANDSTLFTLGKMIPGLHYISDAGN  110 (514)
Q Consensus        34 ~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sG-t~a~~~~l~~l~~~~~gd~v~~~~~~  110 (514)
                      ..++.++.+.++-...+ . -.+..++.+....+...+...+...+.|+++.. .++|......+.+             
T Consensus        67 ~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~-------------  133 (405)
T COG0520          67 LYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAK-------------  133 (405)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHH-------------
Confidence            44445555554433221 1 123344555555555555543333344555544 3467666655553             


Q ss_pred             chhhhhhhhcCCCCeeeccCC-----ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848        111 HASMIQGIRNSSAPKIIYRHN-----DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  185 (514)
Q Consensus       111 h~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (514)
                               ..|+++++++.+     +.++++.    ..+.++|++.++.+...+|..-|..++.++++++|+.++||-+
T Consensus       134 ---------~~Ga~v~~i~~~~~g~~~~~~~~~----~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa  200 (405)
T COG0520         134 ---------RTGAKVRVIPLDDDGLLDLDALEK----LITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA  200 (405)
T ss_pred             ---------hcCcEEEEEecCCCCCcCHHHHHH----hcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence                     334555555432     3344444    5667889999999999999999999999999999999999998


Q ss_pred             cccccc
Q psy16848        186 HAVGLY  191 (514)
Q Consensus       186 ~~~g~~  191 (514)
                      |+.|..
T Consensus       201 q~~~h~  206 (405)
T COG0520         201 QAAGHL  206 (405)
T ss_pred             cccCcc
Confidence            887643

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=92.42  E-value=1.6  Score=45.26  Aligned_cols=164  Identities=19%  Similarity=0.091  Sum_probs=113.7

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~i~~~sGt~a~~   89 (514)
                      +|++|+|+.+.-   -+|  ||++.+++.+++.+. ..+      ....+...++++++++++. .++++|++||++|++
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-~~~------~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e  118 (423)
T TIGR00713        46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG-TSY------GAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATM  118 (423)
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC-CcC------CCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHH
Confidence            566666664332   122  799999999999872 211      1124567889999999874 457888999999999


Q ss_pred             cchhhccccCCCceEEecCc-cchhhhhhhhc--C-----------------CCCeeeccCCChHHHHHHHHhcccCCCc
Q psy16848         90 STLFTLGKMIPGLHYISDAG-NHASMIQGIRN--S-----------------SAPKIIYRHNDVNHLTQVLENMDVKIPK  149 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~-~h~~~~~~~~~--~-----------------~~~~~~~~~~d~~~l~~~l~~~~~~~~~  149 (514)
                      .+++......+++.|+.-.+ +|......+..  .                 ......++++|++++++.+.+.. .+.+
T Consensus       119 ~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-~~~a  197 (423)
T TIGR00713       119 SAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYG-EEIA  197 (423)
T ss_pred             HHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcC-CcEE
Confidence            99986443223455555444 55433222210  0                 11234566779999999997542 4567


Q ss_pred             EEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        150 LVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       150 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++++.+++.+|.+.|    +.+++++++++|..+.+|+.+.
T Consensus       198 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~  239 (423)
T TIGR00713       198 GVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT  239 (423)
T ss_pred             EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc
Confidence            8899989988888887    5789999999999999999883

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=92.07  E-value=1.6  Score=44.94  Aligned_cols=60  Identities=15%  Similarity=0.250  Sum_probs=51.6

Q ss_pred             CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        124 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       124 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .+..++++|.+.+++.+.    .+.+.|+++..+..+|...|    +..++++|+++|+.+.+|+.+.
T Consensus       168 ~~~~~~~~d~~~le~~i~----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~  231 (401)
T PRK00854        168 GFRVVPFGDAEALEAAIT----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT  231 (401)
T ss_pred             CeEEeCCCCHHHHHHHhC----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            455678889999998874    35689999999988898887    8999999999999999999996

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=91.80  E-value=1.9  Score=44.98  Aligned_cols=65  Identities=31%  Similarity=0.482  Sum_probs=52.5

Q ss_pred             CChHHHHHHHHhc-ccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        131 NDVNHLTQVLENM-DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       131 ~d~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      ++.+++++.+.+. ...+...++++.++.+.|.+.|    +..++++|+++|+.+.+|+.|. | .|.+|.+
T Consensus       190 ~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G-~gr~G~~  259 (433)
T PRK08117        190 ECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-G-FGRTGEW  259 (433)
T ss_pred             HHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-c-cCccccc
Confidence            3567788888753 2345678999999999999999    9999999999999999999998 6 4555543

>PRK05939 hypothetical protein; Provisional

Probab=91.42  E-value=0.41  Score=49.18  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=55.5

Q ss_pred             hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        117 GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       117 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      .++..|.+++.++..|.+++++.+.    .++++|.++.....+|.+.+..++.++++++|+.+.+|..++.+
T Consensus       105 ~l~~~G~~v~~v~~~d~e~l~~~l~----~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~  173 (397)
T PRK05939        105 TLRGLGVEVTMVDATDVQNVAAAIR----PNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSP  173 (397)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHhCC----CCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccc
Confidence            3444566677777678888887774    46788989877778899999999999999999999999987655

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=91.20  E-value=0.38  Score=48.54  Aligned_cols=56  Identities=34%  Similarity=0.505  Sum_probs=48.3

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |++++++.+.    .+++++.+......+|.+.|..++.++++++|+.+.+|..|+.|..
T Consensus       127 d~~~l~~~l~----~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~  182 (353)
T TIGR03235       127 DVDELADAIR----PDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI  182 (353)
T ss_pred             CHHHHHHhCC----CCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc
Confidence            6777877764    3568999998888999999999999999999999999999987754

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=91.16  E-value=0.46  Score=48.75  Aligned_cols=70  Identities=17%  Similarity=0.213  Sum_probs=56.6

Q ss_pred             hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccc
Q psy16848        119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG  192 (514)
Q Consensus       119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  192 (514)
                      +..|.++..++..|++++++.+.    .++++|.++.....+|.+.+..++.++++++|+.+.+|++++.+..+
T Consensus       120 ~~~G~~~~~vd~~d~e~l~~~i~----~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~  189 (391)
T TIGR01328       120 TKFGIQVDFINMAIPEEVKAHIK----DNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLT  189 (391)
T ss_pred             hcCCeEEEEECCCCHHHHHHhhc----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccC
Confidence            44566666666667888877764    35689999988888999999999999999999999999998876543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=91.08  E-value=1.2  Score=45.65  Aligned_cols=63  Identities=30%  Similarity=0.493  Sum_probs=51.8

Q ss_pred             cCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        129 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       129 ~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      +.+|.+++++.+.    .+...++++.++.+.|.+.|    +.+++++|+++|..+.+|+.+. | .|++|.+
T Consensus       165 ~~~d~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G-~GRtG~~  231 (395)
T PRK03715        165 ELNDIASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-G-CGRTGTL  231 (395)
T ss_pred             CCchHHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCcch
Confidence            3467888888774    24678999999999999988    8999999999999999999988 6 4665543

>PRK07179 hypothetical protein; Provisional

Probab=90.90  E-value=0.12  Score=53.24  Aligned_cols=47  Identities=36%  Similarity=0.733  Sum_probs=41.5

Q ss_pred             EEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        151 VAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      |++++.+..+|.+.|+.++.++++++|+.+.+|+.|+.|..|..|.|
T Consensus       185 V~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g  231 (407)
T PRK07179        185 IVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAG  231 (407)
T ss_pred             EEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCc
Confidence            55677888899999999999999999999999999998887776655

>TIGR01814 kynureninase kynureninase

Probab=90.69  E-value=0.65  Score=47.87  Aligned_cols=59  Identities=22%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      +++++++.+... ..+.+++.++++...+|.+.|.+++.++++++|+.+++|..|+.|..
T Consensus       157 ~~~~l~~~~~~~-~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~  215 (406)
T TIGR01814       157 RLEDILDTIEKN-GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV  215 (406)
T ss_pred             CHHHHHHHHHhc-CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc
Confidence            677887777643 34678999999999999999999999999999999999999998754

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK06234 methionine gamma-lyase; Provisional

Probab=90.53  E-value=0.6  Score=48.09  Aligned_cols=72  Identities=18%  Similarity=0.302  Sum_probs=58.5

Q ss_pred             hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc--CceEEeeccccccccc
Q psy16848        117 GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYG  192 (514)
Q Consensus       117 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~  192 (514)
                      .++..|.+++.++..|++++++.+..    ++++|.++.....+|.+.+..++.++++++  |+.+++|+.++.+..+
T Consensus       123 ~~~~~G~~v~~vd~~d~e~l~~~i~~----~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~  196 (400)
T PRK06234        123 GLTRYGVEVTFVDTSNLEEVRNALKA----NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ  196 (400)
T ss_pred             HHhhCCeEEEEECCCCHHHHHHHhcc----CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence            34556777777777788888887743    568899998888889999999999999997  8999999998877544

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=90.50  E-value=1.1  Score=46.60  Aligned_cols=116  Identities=22%  Similarity=0.338  Sum_probs=74.2

Q ss_pred             HHHHHHHhH-cCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhh-cCCCCeeeccCCChHHHHHHHH
Q psy16848         64 KLEEDVAKL-HQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIR-NSSAPKIIYRHNDVNHLTQVLE  141 (514)
Q Consensus        64 ~~~~~la~~-~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~-~~~~~~~~~~~~d~~~l~~~l~  141 (514)
                      +..-++++. .|..+.+.+.+|.++......++..  .+ ..-...+...    ++. .....+..++++|.+.+++.+.
T Consensus       123 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~--~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~l~~~l~  195 (428)
T PRK12389        123 MTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAG--SG-PSTLGTPDSA----GVPKSIAQEVITVPFNDIEALKEALD  195 (428)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcC--Cc-ccccCCCCCC----CCCCcccCceEEcCCCCHHHHHHHHH
Confidence            333344444 5777788888888885433322221  00 0000000000    111 1123456677889999999997


Q ss_pred             hcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        142 NMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      +.. .....++++.++...|.+.|    +.+++++|+++|+.+.+|+.+.
T Consensus       196 ~~~-~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~t  244 (428)
T PRK12389        196 KWG-DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT  244 (428)
T ss_pred             hcC-CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            654 44678889999988899998    8899999999999999999875

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=90.07  E-value=0.45  Score=49.54  Aligned_cols=166  Identities=15%  Similarity=0.023  Sum_probs=113.6

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~~   89 (514)
                      +|+.|+||.+.-   .+|  ||++.+++.+|+++.. ..      ........++.+++++++ +.++++|++|||+|++
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~-~~------~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e  118 (431)
T PRK06209         46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC-NF------TRPSAIELDAAESFLELIDGADMVKFCKNGSDATS  118 (431)
T ss_pred             CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc-CC------CCCCHHHHHHHHHHHHhCCccceEEEecCHHHHHH
Confidence            666777774432   233  8999999999999732 11      112344457888888887 3567899999999999


Q ss_pred             cchhhccccCCCceEEec--Ccc-------chhhhhhhhc---CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848         90 STLFTLGKMIPGLHYISD--AGN-------HASMIQGIRN---SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  157 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~--~~~-------h~~~~~~~~~---~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~  157 (514)
                      .|++..........|+.-  ...       |.........   ....+..++++|++++++.+.+.. .+...|+++.++
T Consensus       119 ~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~aavi~Epv~  197 (431)
T PRK06209        119 AAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDHP-GRIACVILEPAT  197 (431)
T ss_pred             HHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHHHhCC-CCEEEEEEcccc
Confidence            999865432223344432  222       2211100000   011245678899999999997643 356788899999


Q ss_pred             cccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      .+.++...+++++++++++|+.+.+|+.| .|.
T Consensus       198 g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~  229 (431)
T PRK06209        198 ADEPQDGFLHEVRRLCHENGALFILDEMI-TGF  229 (431)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccC
Confidence            88888888999999999999999999998 666

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=90.04  E-value=0.68  Score=47.48  Aligned_cols=70  Identities=19%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        118 IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       118 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      ++..|.+++.++..|.+++++.+.    .++++|.++.....+|.+.+..++.++++++|..+.+|+.++.+..
T Consensus       121 ~~~~G~~v~~vd~~d~~~l~~~i~----~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~  190 (390)
T PRK08133        121 FARFGIETTFVDLTDLDAWRAAVR----PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPAL  190 (390)
T ss_pred             HHHcCcEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccccc
Confidence            345567777777778888887774    3568888888777889999999999999999999999998876543

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=90.02  E-value=0.58  Score=47.76  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=55.8

Q ss_pred             cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        120 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       120 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      ..|.+++.++..|++++++.+.    .++++|.+++....+|.+.+..++.++++++|+.+.+|.+++.+..
T Consensus       108 ~~G~~v~~vd~~d~~~le~~i~----~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~  175 (378)
T TIGR01329       108 RSGVVVVHVDTTDLDKVKAALG----PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL  175 (378)
T ss_pred             HcCcEEEEeCCCCHHHHHHhcC----cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence            4466666666668888887774    4678999999888899999999999999999999999998866543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07503 methionine gamma-lyase; Provisional

Probab=89.68  E-value=0.66  Score=47.81  Aligned_cols=69  Identities=17%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      +..|.++..++..|++.+++.+..    ++++|+++.....+|.+.+..++.++++++|..+.+|..++.+..
T Consensus       126 ~~~G~~v~~vd~~d~~~l~~~i~~----~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~  194 (403)
T PRK07503        126 GEFGVTVRHVDLTDPAALKAAISD----KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL  194 (403)
T ss_pred             hhCCEEEEEeCCCCHHHHHHhcCc----cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc
Confidence            345666666666678888877743    578888887777889999999999999999999999999886644

>PRK06062 hypothetical protein; Provisional

Probab=89.57  E-value=3.6  Score=43.08  Aligned_cols=167  Identities=17%  Similarity=0.109  Sum_probs=119.9

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+||.+.   ..++  ||+|.+++.+++++......  .   -..+...++.++++++..  .++++|++||++|+
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~--~---~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAv  125 (451)
T PRK06062         51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP--A---HANDARSEAARLIAERAPGDLSKVFFTNGGADAN  125 (451)
T ss_pred             CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC--c---cCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHH
Confidence            56666666432   2223  79999999999998433211  1   124677889999999874  46789999999999


Q ss_pred             ccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCe-----------ee--ccC---------CC-------hHHHHH
Q psy16848         89 DSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPK-----------II--YRH---------ND-------VNHLTQ  138 (514)
Q Consensus        89 ~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~-----------~~--~~~---------~d-------~~~l~~  138 (514)
                      +.|++.... +++...|.....+|.....++...+...           ..  ++.         +|       .++|++
T Consensus       126 e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~  205 (451)
T PRK06062        126 EHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLER  205 (451)
T ss_pred             HHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHH
Confidence            999986543 3445566777788888877766543211           11  010         22       466777


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .|......+...|+++.++...|.+.|    +..++++|+++|+.+.+|+.+.
T Consensus       206 ~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t  258 (451)
T PRK06062        206 VIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA  258 (451)
T ss_pred             HHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc
Confidence            776544456678999999999999999    9999999999999999999886

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=88.60  E-value=0.26  Score=50.55  Aligned_cols=50  Identities=44%  Similarity=0.813  Sum_probs=44.7

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      +++|.+++++..+|.+.|..++.++++++|..+.+|+.|+.|..+..+.+
T Consensus       171 ~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~  220 (393)
T TIGR01822       171 HRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRG  220 (393)
T ss_pred             ceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCc
Confidence            46888999999999999999999999999999999999998887765544

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=88.53  E-value=1  Score=46.15  Aligned_cols=54  Identities=31%  Similarity=0.460  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      |.+++++.+.    .+++++.+.+....+|...|..++.++++.+|+.+.+|..|..|
T Consensus       145 ~~~~l~~~i~----~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~  198 (397)
T TIGR01976       145 HPDDLASLLS----PRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAP  198 (397)
T ss_pred             CHHHHHHhcC----CCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhcc
Confidence            5677777663    35789999999999999999999999999999999999988654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=87.56  E-value=5.1  Score=41.56  Aligned_cols=101  Identities=17%  Similarity=0.220  Sum_probs=60.8

Q ss_pred             CCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCC-----hHHHHHHHHhcccCCC
Q psy16848         74 QKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHND-----VNHLTQVLENMDVKIP  148 (514)
Q Consensus        74 ~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d-----~~~l~~~l~~~~~~~~  148 (514)
                      +..+.+.+.+|.++......++..  .+        .|.+....+ ..+...+.++++|     .+.+++.+.+.. ...
T Consensus       133 ~r~~ii~~~~~yHG~t~~~ls~~~--~~--------~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~-~~i  200 (423)
T PRK05964        133 GRSRFLSLRGGYHGDTIGTMSVGD--RG--------GMHALYTPL-LFEQVTAPFPPDGYEQATLDALEALLEKHA-GEI  200 (423)
T ss_pred             CCcEEEEEcCCcCCccHHHHhcCC--Cc--------cccccccCc-CCCCEEeCCCcchhHHHHHHHHHHHHHhCC-CcE
Confidence            456678888888885433333321  11        111111111 1123445666666     778888887543 344


Q ss_pred             cEEEeecccccc-C----CccchhHHhhhhhhcCceEEeeccc
Q psy16848        149 KLVAFETVHSMT-G----AICPLKELCEVSHQHGALTFVDEVH  186 (514)
Q Consensus       149 ~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~  186 (514)
                      ..++++..+... |    +...+.++.++|+++|+.+.+|+.|
T Consensus       201 aavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~  243 (423)
T PRK05964        201 AAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA  243 (423)
T ss_pred             EEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence            566777654433 3    3344888999999999999999998

>PRK14012 cysteine desulfurase; Provisional

Probab=87.52  E-value=4.4  Score=41.67  Aligned_cols=56  Identities=23%  Similarity=0.382  Sum_probs=47.7

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |++++++.+.    .+++++.+......+|.+.|..++.++++++|+.+.+|.+|+.|..
T Consensus       133 d~~~l~~~i~----~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~  188 (404)
T PRK14012        133 DLEKLEAAMR----DDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV  188 (404)
T ss_pred             CHHHHHHhcC----CCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc
Confidence            6788887774    3467888888887889999999999999999999999999987644

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=87.45  E-value=1.6  Score=44.23  Aligned_cols=84  Identities=10%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             CCceEEecCccchhh----hhhhhcCCCCeeeccC---CChHHHHHHHHhcccCCCcEEEe-eccccccCCccchhHHhh
Q psy16848        100 PGLHYISDAGNHASM----IQGIRNSSAPKIIYRH---NDVNHLTQVLENMDVKIPKLVAF-ETVHSMTGAICPLKELCE  171 (514)
Q Consensus       100 ~gd~v~~~~~~h~~~----~~~~~~~~~~~~~~~~---~d~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  171 (514)
                      +|+.|+++.+.+...    ...+...|++++.+..   .|++++++.+..    +++.+++ ......+|.+.+..++.+
T Consensus        98 ~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~----~t~ai~~v~~~~~~~g~~~~~~~i~~  173 (363)
T TIGR01437        98 EVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITE----KTAAILYIKSHHCVQKSMLSVEDAAQ  173 (363)
T ss_pred             ccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcCh----hceEEEEEecCCCCcCCcCCHHHHHH
Confidence            788999987544432    3566778888887642   478888887742    3454443 221123577889999999


Q ss_pred             hhhhcCceEEeecccc
Q psy16848        172 VSHQHGALTFVDEVHA  187 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~  187 (514)
                      +++++|..+.+|.+|+
T Consensus       174 ~a~~~gi~vivD~a~~  189 (363)
T TIGR01437       174 VAQEHNLPLIVDAAAE  189 (363)
T ss_pred             HHHHcCCeEEEECCCC
Confidence            9999999999999875

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK02948 cysteine desulfurase; Provisional

Probab=87.44  E-value=0.91  Score=46.28  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=47.8

Q ss_pred             CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      .|.+++++.+.    .+++++.+.+....+|.+.|..++.++++++|..+.+|..|+.|.
T Consensus       126 ~d~~~l~~~l~----~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~  181 (381)
T PRK02948        126 IRLVDLERAIT----PDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGK  181 (381)
T ss_pred             CCHHHHHHhcC----CCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccc
Confidence            36778877764    346899999999999999999999999999999999998887764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=87.35  E-value=15  Score=37.20  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             HHHHHHHHhHcC----CCcEEEEeccccc-cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         63 EKLEEDVAKLHQ----KEAGLVFTSCYVA-NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        63 ~~~~~~la~~~~----~~~~i~~~sGt~a-~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .|.+=++|+.+.    +.+.+.+.++-|+ .+.++.+-.+  |         .|   .+...-.-..+..++-+|.++++
T Consensus       113 ~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~--~---------ky---~~~F~Pl~~g~~~vpfnDi~al~  178 (404)
T COG4992         113 NEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQ--P---------KY---RKGFGPLLPGFRHVPFNDIEALE  178 (404)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCC--h---------hh---ccCCCCCCCCceecCCCCHHHHH
Confidence            344445666554    3356777787777 4555533322  1         01   11111111234456778999999


Q ss_pred             HHHHhcccCCCcEEEee---ccc-cccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848        138 QVLENMDVKIPKLVAFE---TVH-SMTGAICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      +++.+    ....|+.+   |.. -.+.+..-+..++++|+++|+.+.+|+.+.
T Consensus       179 ~ai~~----~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt  228 (404)
T COG4992         179 AAIDE----DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQT  228 (404)
T ss_pred             HHhcc----CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEecccc
Confidence            99987    22233332   111 122333446778999999999999999764

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=87.32  E-value=1  Score=46.89  Aligned_cols=66  Identities=17%  Similarity=0.175  Sum_probs=50.7

Q ss_pred             CCCeeecc-CCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        122 SAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       122 ~~~~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |.+++.+. ..|.+.+++.+.    .+.++|+++.....+|.+.+..++.++++++|+.+.+|..|+.++.
T Consensus       133 Gi~v~~vdd~~d~e~l~~ai~----~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~  199 (436)
T PRK07812        133 GIEVSFVEDPDDLDAWRAAVR----PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL  199 (436)
T ss_pred             eEEEEEECCCCCHHHHHHhCC----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence            44444442 235666665543    3568999999999999999999999999999999999998876543

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=86.85  E-value=1.7  Score=43.83  Aligned_cols=57  Identities=26%  Similarity=0.399  Sum_probs=45.8

Q ss_pred             CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      .|.+++++.+..   .+++++.+......+|.+.|..++.++++++|..+++|..|+.|.
T Consensus       111 ~~~~~l~~~i~~---~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~  167 (356)
T cd06451         111 VSPEEIAEALEQ---HDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGG  167 (356)
T ss_pred             CCHHHHHHHHhc---cCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccC
Confidence            378888888864   256777776654568999999999999999999999999887653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=86.75  E-value=1.2  Score=46.13  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=53.7

Q ss_pred             hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        118 IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       118 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      ++..|.+++.++..|++++++.+..    ++++|.++.....+|.+.+..++.++++++|+.+.+|+.++.|.
T Consensus       117 ~~~~G~~v~~v~~~d~~~l~~~l~~----~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~  185 (418)
T TIGR01326       117 LKRLGIEVRFVDPDDPEEFEKAIDE----NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPY  185 (418)
T ss_pred             HHHcCcEEEEECCCCHHHHHHhcCc----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhh
Confidence            3445666666666688888877743    46788887766667889999999999999999999999887553

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=86.61  E-value=1.4  Score=45.03  Aligned_cols=68  Identities=26%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      +..|.++..++..|++++++.+.    .++++|+++......|.+.+..++.++++++|..+.+|+.++.+.
T Consensus       115 ~~~g~~v~~v~~~d~~~l~~~i~----~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~  182 (380)
T TIGR01325       115 PRFGIEVSFVDPTDLNAWEAAVK----PNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPV  182 (380)
T ss_pred             HHhCCEEEEECCCCHHHHHHhcC----CCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            34455666666667788777663    356888888777778999999999999999999999999887554

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=86.59  E-value=1.5  Score=45.39  Aligned_cols=55  Identities=33%  Similarity=0.514  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+++++.+.    .+++++.+......+|.+.|..++.++++++|+.+++|..|+.|.
T Consensus       162 ~~~~l~~~i~----~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~  216 (424)
T PLN02855        162 DVEQLKELLS----EKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPH  216 (424)
T ss_pred             CHHHHHHHhc----cCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC
Confidence            6777777774    267899999888889999999999999999999999999987664

>TIGR02006 IscS cysteine desulfurase IscS

Probab=86.58  E-value=5.3  Score=41.04  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |++++++.+.    .+++++.+......+|...|..++.++++++|+.+.+|..|+.|..
T Consensus       131 d~~~l~~~l~----~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~  186 (402)
T TIGR02006       131 DLEELKAAIR----DDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI  186 (402)
T ss_pred             CHHHHHHhcC----CCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCc
Confidence            6777777664    3467888888888899999999999999999999999999987754

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=86.46  E-value=0.84  Score=45.99  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=38.1

Q ss_pred             CcEEEeeccccccCCc---cchhHHhhhhhhcCceEEeeccccccccccCC
Q psy16848        148 PKLVAFETVHSMTGAI---CPLKELCEVSHQHGALTFVDEVHAVGLYGEHG  195 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  195 (514)
                      +++|+++| ++++|++   +++.++.++++++|+.+++|++|+.|+.+..+
T Consensus       137 ~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~  186 (346)
T TIGR03576       137 TSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYG  186 (346)
T ss_pred             ceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCC
Confidence            45666676 5899998   67888888899999999999999988765433

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=86.34  E-value=11  Score=38.31  Aligned_cols=149  Identities=25%  Similarity=0.228  Sum_probs=89.7

Q ss_pred             ChhHHHHHHHHHHH----hCCCCCCcCcccCcchHHHHHHHHHHhHcCC-CcEEEEeccccccccchhhccccCCCceEE
Q psy16848         31 PKGGRKCLGEALEK----FGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-EAGLVFTSCYVANDSTLFTLGKMIPGLHYI  105 (514)
Q Consensus        31 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~  105 (514)
                      .|++.+.+.+..+.    +++.........|.  -.-.+|..+..++.. ++++++.+|.=+...+=.+-..  ..+...
T Consensus        33 s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gs--Gt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~--g~~v~~  108 (383)
T COG0075          33 SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGS--GTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERY--GAEVVV  108 (383)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCC--cHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHh--CCceEE
Confidence            36666555555543    44332222333333  345778888888864 5788888887654332211111  233333


Q ss_pred             ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848        106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  185 (514)
Q Consensus       106 ~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (514)
                      ++.. +                -...|++++++.|.+.+  ..+.+.+-++=-.+|-+-|..++..+++++|+.+.||-.
T Consensus       109 ~~~~-w----------------g~~v~p~~v~~~L~~~~--~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaV  169 (383)
T COG0075         109 LEVE-W----------------GEAVDPEEVEEALDKDP--DIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAV  169 (383)
T ss_pred             EeCC-C----------------CCCCCHHHHHHHHhcCC--CccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEec
Confidence            2221 1                12338999999998433  345666655545679999999999999999999999976


Q ss_pred             ccccccc--cCCCceeeec
Q psy16848        186 HAVGLYG--EHGAGIGERD  202 (514)
Q Consensus       186 ~~~g~~~--~~~~g~~~~~  202 (514)
                      -+.|---  ...+||+...
T Consensus       170 sS~Gg~~~~vd~wgiDv~i  188 (383)
T COG0075         170 SSLGGEPLKVDEWGIDVAI  188 (383)
T ss_pred             ccCCCcccchhhcCccEEE
Confidence            6665332  3446655443

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=86.19  E-value=1.7  Score=44.14  Aligned_cols=55  Identities=35%  Similarity=0.579  Sum_probs=46.8

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |++++++.+.+    +++++++......+|...|..++.++++++|..+.+|.+|+.|.
T Consensus       128 d~~~l~~~l~~----~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~  182 (373)
T cd06453         128 DLEALEKLLTE----RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH  182 (373)
T ss_pred             CHHHHHHHhcC----CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCc
Confidence            77888887754    57888888777788999999999999999999999999887554

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=86.03  E-value=4.1  Score=41.30  Aligned_cols=57  Identities=30%  Similarity=0.512  Sum_probs=49.5

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG  192 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  192 (514)
                      |.+++++.|.    .+++++.+..+...+|...|.+++.++++++|+.+.+|-.|+.|..-
T Consensus       128 ~~~~~~~~l~----~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~  184 (371)
T PF00266_consen  128 DLEDLEEALN----PDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVP  184 (371)
T ss_dssp             SHHHHHHHHH----TTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS
T ss_pred             hhhhhhhhhc----cccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccc
Confidence            6788888883    67899999999999999999999999999999999999998887653

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=85.99  E-value=1.9  Score=43.81  Aligned_cols=56  Identities=20%  Similarity=0.480  Sum_probs=47.7

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |.+++++.+.    .+++++.+......+|.+.|..++.++++++|..+.+|.+|+.|..
T Consensus       126 d~~~l~~~~~----~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~  181 (376)
T TIGR01977       126 SPERIKRAIK----TNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVI  181 (376)
T ss_pred             CHHHHHHhcC----CCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCcc
Confidence            6777777663    3578888888777899999999999999999999999999988754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK06460 hypothetical protein; Provisional

Probab=85.69  E-value=2  Score=43.88  Aligned_cols=69  Identities=16%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        117 GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       117 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      .++..|.++..++.++.+.+++.    ...+++++.++.....+|.+.+..++.++++++|..+.+|+.++.+
T Consensus       104 ~~~~~G~~v~~~~~~~~~~l~~~----~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~  172 (376)
T PRK06460        104 YLKNWGVNVDASNPGSDNIIEKA----KSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTP  172 (376)
T ss_pred             HHHhhCcEEEEECCCCHHHHHHh----cCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcc
Confidence            34455666666655444444332    2346788999888888899999999999999999999999987644

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=85.62  E-value=2  Score=44.10  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=46.8

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+++++.+.    .+++++.+..+...+|.+.|..++.++++++|+.+++|..|+.|.
T Consensus       149 d~~~l~~~i~----~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~  203 (401)
T PRK10874        149 DVDLLPELIT----PRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVH  203 (401)
T ss_pred             CHHHHHHhcC----cCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccc
Confidence            5677777663    357889999888899999999999999999999999999887654

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=84.53  E-value=2.4  Score=43.54  Aligned_cols=55  Identities=25%  Similarity=0.405  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+++++.+.    .+++++.+.+....+|...|..++.++++++|+.+++|..|+.|.
T Consensus       146 ~~~~l~~~i~----~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~  200 (398)
T TIGR03392       146 DIRQLPELLT----PRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVH  200 (398)
T ss_pred             CHHHHHHHhc----cCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC
Confidence            5677777663    356888888888889999999999999999999999999887653

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=84.34  E-value=2.3  Score=43.64  Aligned_cols=55  Identities=35%  Similarity=0.570  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+++++.+.    .+++++.+..+...+|...|..++.++++++|..+.+|.+|+.|.
T Consensus       148 ~~~~l~~~i~----~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~  202 (403)
T TIGR01979       148 DLDDLEKLLT----EKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPH  202 (403)
T ss_pred             CHHHHHHHhc----cCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCc
Confidence            5677776663    367889999888889999999999999999999999999887653

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK06541 hypothetical protein; Provisional

Probab=84.05  E-value=16  Score=38.38  Aligned_cols=56  Identities=23%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccc-ccc
Q psy16848        134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVH-AVG  189 (514)
Q Consensus       134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~g  189 (514)
                      +.+++.+.+........++++.++...|.+.|    +..++++|+++|+.+.+|+.+ ..|
T Consensus       208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfG  268 (460)
T PRK06541        208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFG  268 (460)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence            56777776544456778889999988899999    999999999999999999988 444

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=83.83  E-value=2.2  Score=44.32  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +..|.+++.++..|++++++.+..    ++++|.++....-+|.+.+..++.++++++|+.+.+|..++.+
T Consensus       125 ~~~Gv~v~~vd~~d~e~l~~ai~~----~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~  191 (431)
T PRK08248        125 PKLGITVKFVDPSDPENFEAAITD----KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP  191 (431)
T ss_pred             HhCCEEEEEECCCCHHHHHHhcCC----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence            445666666666688888877743    4678888755556799999999999999999999999987644

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=83.68  E-value=11  Score=39.23  Aligned_cols=174  Identities=16%  Similarity=0.116  Sum_probs=117.3

Q ss_pred             CCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a   87 (514)
                      +|++|+|+.+.-+   +|  ||++.+++.+++++...... ..+   ..+...++.+++++.+.   .++++|++||++|
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-~~~---~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA  127 (441)
T PRK05769         52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSL-TDF---YYEPAVELAERLVEIAPGGFEKKVFFTNSGTES  127 (441)
T ss_pred             CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccC-ccc---CCHHHHHHHHHHHHhCCCCCCCEEEECCchHHH
Confidence            5667777744322   23  79999999999997432211 111   24667889999999874   3678889999999


Q ss_pred             cccchhhccc-cCCCceEEecCccchhhhhhhhcCCCC-------------eeeccC----------CCh--------HH
Q psy16848         88 NDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAP-------------KIIYRH----------NDV--------NH  135 (514)
Q Consensus        88 ~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~-------------~~~~~~----------~d~--------~~  135 (514)
                      ++.|++.... .++...|.....+|.....++...+..             +...+.          .+.        +.
T Consensus       128 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (441)
T PRK05769        128 NEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDF  207 (441)
T ss_pred             HHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHH
Confidence            9999976543 334445666777888877666544321             111111          111        22


Q ss_pred             HHH-HHHh-cccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeeccccccccccCC
Q psy16848        136 LTQ-VLEN-MDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHG  195 (514)
Q Consensus       136 l~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  195 (514)
                      +++ .+.+ ....+...|+++.++.+.|.+.|    ++.++++|+++|..+.+|+.+. | .|..|
T Consensus       208 le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G-~gr~G  271 (441)
T PRK05769        208 IEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-G-MGRTG  271 (441)
T ss_pred             HHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccc
Confidence            444 2222 13456788999999999999999    9999999999999999999987 4 34444

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=83.49  E-value=2.2  Score=43.99  Aligned_cols=55  Identities=31%  Similarity=0.505  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+++++.+.    .+++++.+......+|...|..++.++++++|+.+.+|..|+.|.
T Consensus       153 d~~~l~~~i~----~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~  207 (406)
T PRK09295        153 QLETLPALFD----ERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMH  207 (406)
T ss_pred             CHHHHHHhcC----CCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCc
Confidence            6677777663    357889998888889999999999999999999999999987764

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=83.39  E-value=6.5  Score=40.81  Aligned_cols=168  Identities=15%  Similarity=0.095  Sum_probs=113.9

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CCC-cEEEE-ecc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QKE-AGLVF-TSC   84 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~i~~-~sG   84 (514)
                      +|++|+||.+.   ..+|  ||++.+++.+|+++.+.....    ....+...++.+++++.+    +.+ .++|+ +||
T Consensus        37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~----~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG  112 (425)
T PRK09264         37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGL----DMHTTAKREFLETFEETILKPRGLDYKVQFTGPTG  112 (425)
T ss_pred             CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccccccc----ccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCH
Confidence            56667776432   2223  899999999999975443221    112466778888888864    233 34554 799


Q ss_pred             ccccccchhhccc-cCCCceEEecCccchhhhhhhhcCCC------------CeeeccC--------CChHHHHHHHHhc
Q psy16848         85 YVANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSA------------PKIIYRH--------NDVNHLTQVLENM  143 (514)
Q Consensus        85 t~a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~------------~~~~~~~--------~d~~~l~~~l~~~  143 (514)
                      ++|++.|++.... .++...|.....+|.....++...+.            .+..++.        +|.+++++.+.+.
T Consensus       113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~  192 (425)
T PRK09264        113 TNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDS  192 (425)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhc
Confidence            9999999986543 33444566777888887766655431            1122222        3667888888765


Q ss_pred             cc--CCCcEEEeeccccccCCcc----chhHHhhhhhhcCceEEeecccc
Q psy16848        144 DV--KIPKLVAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       144 ~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      ..  .+...++++.++...|...    .+..++++|+++|..+.+|+.|.
T Consensus       193 ~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t  242 (425)
T PRK09264        193 SSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA  242 (425)
T ss_pred             cCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh
Confidence            43  2456888999888776533    57889999999999999999886

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=83.39  E-value=8.1  Score=39.25  Aligned_cols=55  Identities=33%  Similarity=0.509  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+++++.+.    .+++++.+......+|...|..++.++++++|..+.+|..|+.|.
T Consensus       125 ~~~~l~~~i~----~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~  179 (379)
T TIGR03402       125 DLEELRAAIT----DDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGK  179 (379)
T ss_pred             CHHHHHHhcC----CCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccc
Confidence            6788887774    356788888887788999999999999999999999999888763

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=82.93  E-value=2.6  Score=42.91  Aligned_cols=165  Identities=14%  Similarity=0.129  Sum_probs=109.4

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCc--chHHHHHHHHHHhHcCC---CcEEEEeccccccccchhh
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGN--SLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~l~~   94 (514)
                      |.|.++..+ .++.+.+++.+.++.+..+++ +...++.  .+..++..+.+.+.++.   +..++++++|+++..++.+
T Consensus         2 yld~aa~~~-~~~~v~~~~~~~~~~~~~n~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~   79 (382)
T TIGR03403         2 YLDNNATTM-LDPKVKELMDPFFCDIYGNPN-SLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKG   79 (382)
T ss_pred             cccCcCCCC-CCHHHHHHHHHHHHhcCcCCc-cccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence            345554444 357899999998886443333 2222221  22333444445555553   3345556667787777766


Q ss_pred             ccc---cCC-CceEEecCccchhhhhhh---hcCCCCeeeccCC-----ChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         95 LGK---MIP-GLHYISDAGNHASMIQGI---RNSSAPKIIYRHN-----DVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        95 l~~---~~~-gd~v~~~~~~h~~~~~~~---~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      +..   ..+ +++|+++..+|++....+   +..|.+++.++.+     |.+++++.+.    .+++++.+...-..+|.
T Consensus        80 ~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~----~~t~lv~~~~~~n~tG~  155 (382)
T TIGR03403        80 VYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAIT----EKTALVSVMWANNETGM  155 (382)
T ss_pred             HHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcc----cCCeEEEEEcccCCCcc
Confidence            521   124 578999999998886553   4568888777543     5667766664    24578888777777899


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      +.|..++.++++++|..+.+|..++.|.
T Consensus       156 ~~~~~~I~~la~~~g~~~ivD~a~~~g~  183 (382)
T TIGR03403       156 IFPIKEIGEICKERGVLFHTDAVQAIGK  183 (382)
T ss_pred             ccCHHHHHHHHHHcCCEEEEechhhcCC
Confidence            9999999999999999999999887653

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=82.89  E-value=2.2  Score=44.72  Aligned_cols=157  Identities=17%  Similarity=0.187  Sum_probs=104.5

Q ss_pred             ChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcE-EEEeccccccccchhhcccc---CC--
Q psy16848         31 PKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAG-LVFTSCYVANDSTLFTLGKM---IP--  100 (514)
Q Consensus        31 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~-i~~~sGt~a~~~~l~~l~~~---~~--  100 (514)
                      .|.+.+++...+. +|..++.+.+++.|.   .++...+.+++.++||.+++ +-..||+.||+++..++.+.   .|  
T Consensus        62 s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~  141 (493)
T PRK13580         62 SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPAL  141 (493)
T ss_pred             CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcch
Confidence            4777777766665 577677777776654   33333445677788999886 55689999999999998761   12  


Q ss_pred             ------------------------CceEEecCccchhhhh---hhhcCC--CCeeecc------CCChHHHHHHHHhccc
Q psy16848        101 ------------------------GLHYISDAGNHASMIQ---GIRNSS--APKIIYR------HNDVNHLTQVLENMDV  145 (514)
Q Consensus       101 ------------------------gd~v~~~~~~h~~~~~---~~~~~~--~~~~~~~------~~d~~~l~~~l~~~~~  145 (514)
                                              ||+|+.-+..|..-+.   .....+  .++..|.      ..|++++++.+.+   
T Consensus       142 ~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~---  218 (493)
T PRK13580        142 EKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALARE---  218 (493)
T ss_pred             hccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhh---
Confidence                                    7888876555533321   111111  1222221      1377888887754   


Q ss_pred             CCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccc
Q psy16848        146 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG  192 (514)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  192 (514)
                      .+|+++++ |.... +-..|.+++.++++++|+.+++|.+|..|+.+
T Consensus       219 ~~plvii~-g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Glig  263 (493)
T PRK13580        219 FKPLILVA-GYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVA  263 (493)
T ss_pred             cCCEEEEe-Ccccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceec
Confidence            34555554 54444 44779999999999999999999999999887

>PLN02651 cysteine desulfurase

Probab=81.73  E-value=3  Score=42.24  Aligned_cols=55  Identities=27%  Similarity=0.429  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |++++++.+..    +.+++.+..+...+|.+.|..++.++++++|+.+.+|..|+.|.
T Consensus       127 d~~~l~~~i~~----~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~  181 (364)
T PLN02651        127 DLDELAAAIRP----DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGK  181 (364)
T ss_pred             CHHHHHHhcCC----CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCC
Confidence            67788877742    46788888888789999999999999999999999999988764

>PRK08064 cystathionine beta-lyase; Provisional

Probab=81.24  E-value=3  Score=42.71  Aligned_cols=68  Identities=18%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      +..|.+++.++..|.+++++.+.    .+.++|.++.....+|.+.+..++.++++++|+.+.+|.+++.+.
T Consensus       114 ~~~G~~v~~v~~~d~~~l~~~l~----~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~  181 (390)
T PRK08064        114 SRFGIEHTFVDMTNLEEVAQNIK----PNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPL  181 (390)
T ss_pred             HHcCCEEEEECCCCHHHHHHhcC----CCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCccc
Confidence            34456666666557777776663    356888888777778999999999999999999999999876554

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=80.92  E-value=4.9  Score=40.62  Aligned_cols=53  Identities=17%  Similarity=0.320  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |++.+|++|...    +|.|+.=   |.-|.+|....+.++++++|..|..|-+|++|..
T Consensus       111 d~~~ie~aIt~~----tKAIipV---hl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~  163 (374)
T COG0399         111 DPDLIEAAITPR----TKAIIPV---HLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGAT  163 (374)
T ss_pred             CHHHHHHHcccC----CeEEEEe---hhccCCCCHHHHHHHHHHcCCeEEEEcchhccCe
Confidence            888888888654    5655543   3459999999999999999999999999999854

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=80.68  E-value=3.7  Score=41.68  Aligned_cols=70  Identities=13%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccc
Q psy16848        119 RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG  192 (514)
Q Consensus       119 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  192 (514)
                      +..|.+++.++..|++.+++.+..    ++++|.++.-....+...+..++.++++++|..+.+|+.++.+...
T Consensus       112 ~~~G~~v~~vd~~d~~~l~~~i~~----~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~  181 (366)
T PRK08247        112 KKWNVRFVYVNTASLKAIEQAITP----NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ  181 (366)
T ss_pred             hccCceEEEECCCCHHHHHHhccc----CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence            344666666666788888887743    4678887666655688899999999999999999999988655443

>PLN02409 serine--glyoxylate aminotransaminase

Probab=80.01  E-value=16  Score=37.60  Aligned_cols=59  Identities=27%  Similarity=0.296  Sum_probs=48.6

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh--hhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV--SHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~  190 (514)
                      |.+++++.+......+++++.+.+.-..+|.+.|..++.++  ++++|+.+.+|..++.|.
T Consensus       122 ~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~  182 (401)
T PLN02409        122 DLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA  182 (401)
T ss_pred             CHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCC
Confidence            68889888876322467888887766678999999999999  999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	514
2bwo_B	401	5-Aminolevulinate Synthase From Rhodobacter Capsula		2e-74
2bwn_A	401	5-Aminolevulinate Synthase From Rhodobacter Capsula		8e-74
3tqx_A	399	Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A		2e-39
1fc4_A	401	2-Amino-3-Ketobutyrate Coa Ligase Length = 401		1e-32
3a2b_A	398	Crystal Structure Of Serine Palmitoyltransferase Fr		3e-31
2w8w_A	427	N100y Spt With Plp-Ser Length = 427		6e-31
2jgt_A	422	Low Resolution Structure Of Spt Length = 422		6e-31
2w8j_A	427	Spt With Plp-Ser Length = 427		6e-31
2x8u_A	412	Sphingomonas Wittichii Serine Palmitoyltransferase		2e-30
2w8v_A	427	Spt With Plp, N100w Length = 427		3e-30
2w8u_A	427	Spt With Plp, N100y Length = 427		3e-30
2jg2_A	422	High Resolution Structure Of Spt With Plp Internal		3e-30
2w8t_A	427	Spt With Plp, N100c Length = 427		3e-30
1bs0_A	384	Plp-dependent Acyl-coa Synthase Length = 384		1e-26
1dj9_A	384	Crystal Structure Of 8-Amino-7-Oxonanoate Synthase		3e-26
4iw7_A	399	Crystal Structure Of 8-amino-7-oxononanoate Synthas		1e-17
3hqt_A	409	Plp-Dependent Acyl-Coa Transferase Cqsa Length = 40		8e-17
2wk7_A	393	Structure Of Apo Form Of Vibrio Cholerae Cqsa Lengt		9e-17
2wk8_A	389	Structure Of Holo Form Of Vibrio Cholerae Cqsa Leng		9e-17
2dr1_A	386	Crystal Structure Of The Ph1308 Protein From Pyroco		5e-04

>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In Complex With Succinyl-Coa Length = 401

Iteration: 1
 Score =  276 bits (706), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 179/269 (66%)
Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           +  G ++  +   HASMI+GI+ ++ PK I+RHNDV HL +++   D   PKL+AFE+V+
Sbjct: 129 LFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVY 188
Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM G   P+KE+C+++ + GALT++DEVHAVG+YG  GAG+ ERDG +H +DI +GTL K
Sbjct: 189 SMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAK 248
Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           A+G  GGYI  +   +D +RSYA GFIF+TSLPP + AGA+ +I  L + EG +LR   Q
Sbjct: 249 AYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQ 308
Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
                L+  L  +G P+    SHI+P+ IG+P     + DMLL + G YVQPIN+PTVP 
Sbjct: 309 MHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPR 368
Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
           G E++R  P+P H  + ID  V  +  +W
Sbjct: 369 GTERLRFTPSPVHDLKQIDGLVHAMDLLW 397

>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus Length = 401

Iteration: 1
 Score =  274 bits (701), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 125/269 (46%), Positives = 178/269 (66%)
Query: 210 IISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH 269
           +  G ++  +   HASMI+GI+ ++ PK I+RHNDV HL +++   D   PKL+AFE+V+
Sbjct: 129 LFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVY 188
Query: 270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK 329
           SM G   P+KE+C+++ + GALT++DEVHAVG+YG  GAG+ ERDG +H +DI +GTL  
Sbjct: 189 SMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAX 248
Query: 330 AFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ 389
           A+G  GGYI  +   +D +RSYA GFIF+TSLPP + AGA+ +I  L + EG +LR   Q
Sbjct: 249 AYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQ 308
Query: 390 DIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV 449
                L+  L  +G P+    SHI+P+ IG+P     + DMLL + G YVQPIN+PTVP 
Sbjct: 309 MHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPR 368
Query: 450 GEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
           G E++R  P+P H  + ID  V  +  +W
Sbjct: 369 GTERLRFTPSPVHDLKQIDGLVHAMDLLW 397

>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase (Kbl) From Coxiella Burnetii Length = 399

Iteration: 1
 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 154/277 (55%), Gaps = 11/277 (3%)
Query: 214 TLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAF 265
           TL+ PE AI      HAS+I GIR   A +  Y++N    L   L+  D K    KL+A 
Sbjct: 122 TLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAXGDLEAKLKEADEKGARFKLIAT 181
Query: 266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325
           + V S  G I  LK +C+++ ++ AL  VD+ HAVG  GE+G G  E  G    +DI++G
Sbjct: 182 DGVFSXDGIIADLKSICDLADKYNALVXVDDSHAVGFIGENGRGTPEYCGVADRVDILTG 241
Query: 326 TLGKAFGNI-GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL 384
           TLGKA G   GGY  G K  I+ +R+ +  ++F+ ++ P ++A + + + +L + EG +L
Sbjct: 242 TLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKT-EGPQL 300
Query: 385 RAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY 444
           R + Q+   Y R    ++GF +      IIP+ +G+  L T   D LL+E G YV   +Y
Sbjct: 301 RKQLQENSRYFRAGXEKLGFQLVPGNHPIIPVXLGDAQLATNXADHLLQE-GIYVVGFSY 359
Query: 445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
           P VP G+ +IR+  +  HT++ +D+ +     V K L
Sbjct: 360 PVVPXGKARIRVQXSAVHTQQQLDRAIEAFGQVGKKL 396

>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase Length = 401

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 137/278 (49%), Gaps = 14/278 (5%)
Query: 214 TLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPK--LVAF 265
           TL+  E AI      HAS+I G+R   A +  Y +ND   L   L+       +  L+A 
Sbjct: 124 TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDXQELEARLKEAREAGARHVLIAT 183
Query: 266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG 325
           + V S  G I  LK +C+++ ++ AL  VD+ HAVG  GE+G G  E       +DII+G
Sbjct: 184 DGVFSXDGVIANLKGVCDLADKYDALVXVDDSHAVGFVGENGRGSHEYCDVXGRVDIITG 243
Query: 326 TLGKAFGNI-GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE-GVE 383
           TLGKA G   GGY    K  ++ +R  +  ++F+ SL P ++A    +I++L   E G E
Sbjct: 244 TLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAA---SIKVLEXVEAGSE 300
Query: 384 LRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPIN 443
           LR +        R +    GF +      IIP+ +G+  +  K    L KE G YV    
Sbjct: 301 LRDRLWANARQFREQXSAAGFTLAGADHAIIPVXLGDAVVAQKFARELQKE-GIYVTGFF 359
Query: 444 YPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
           YP VP G+ +IR   +  HT E I + V     + K L
Sbjct: 360 YPVVPKGQARIRTQXSAAHTPEQITRAVEAFTRIGKQL 397

>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From Sphingobacterium Multivorum With Substrate L-Serine Length = 398

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 5/258 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HAS+I G R S +  I Y HN++  L   L  +     KL+  + + SM G I  L EL 
Sbjct: 137 HASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELT 196
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
            ++++  A   VD+ H++G+ G  GAG     G   ++D+I GT  K+  ++GG++ G  
Sbjct: 197 SIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLGGFVAGDA 256
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQ 401
           + ID ++  A   +F+ S+ P  +A   +A+ I+ ++ E +E   K+ D   Y + +L+ 
Sbjct: 257 DVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTD---YAKAQLLD 313
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
            GF +  T S I+PI I +      +  M L++ G +V P+  P VP  E  IR +    
Sbjct: 314 HGFDLGATESPILPIFIRSNEKTFWVTKM-LQDDGVFVNPVVSPAVPAEESLIRFSLMAT 372
Query: 462 HTREMIDKFVTDLLAVWK 479
           HT + ID+ +  ++ V+K
Sbjct: 373 HTYDQIDEAIEKMVKVFK 390

>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser Length = 427

Iteration: 1
 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
            YG  GA I    G + N+ IIS     G  V  +   HAS+  G +  +A  + +RHN 
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
           V  L + L  +  +  KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
            +G G+ E  G    +D + GT  K+ G +GG++V      + +R     +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
           V+A A  +IR L +    E R +       L   L  +GF +  E   S I+ + + +  
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
               +   LL + G YV     P  P G   +R +    HT   I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401

>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt Length = 422

Iteration: 1
 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
            YG  GA I    G + N+ IIS     G  V  +   HAS+  G +  +A  + +RHN 
Sbjct: 122 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 180
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
           V  L + L  +  +  KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G
Sbjct: 181 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 240
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
            +G G+ E  G    +D + GT  K+ G +GG++V      + +R     +IFT SLPP+
Sbjct: 241 PNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 300
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
           V+A A  +IR L +    E R +       L   L  +GF +  E   S I+ + + +  
Sbjct: 301 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 358
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
               +   LL + G YV     P  P G   +R +    HT   I
Sbjct: 359 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 402

>pdb|2W8J|A Chain A, Spt With Plp-Ser Length = 427

Iteration: 1
 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
            YG  GA I    G + N+ IIS     G  V  +   HAS+  G +  +A  + +RHN 
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
           V  L + L  +  +  KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
            +G G+ E  G    +D + GT  K+ G +GG++V      + +R     +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
           V+A A  +IR L +    E R +       L   L  +GF +  E   S I+ + + +  
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
               +   LL + G YV     P  P G   +R +    HT   I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401

>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase Length = 412

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 5/251 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HAS+  G     A  + +RHN V  L + L  +  +  KLV  E V+SM G I PL+E+ 
Sbjct: 138 HASIYDGCWLGDAEIVRFRHNSVEDLDKRLGRLPAEAGKLVVLEGVYSMMGDIAPLQEMV 197
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
            VS +HGA+  VDE H +G +GEHG G+ E  G   ++D + GT   + G +GG+ V   
Sbjct: 198 AVSKKHGAMILVDEAHGMGFFGEHGRGVFEEAGVEADVDFVVGTFSXSVGTVGGFCVSNH 257
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELI 400
              + +R     ++FT SLPP+V+A A  +IR L  +  +   L    + +   LR+   
Sbjct: 258 PKFEVLRLVCRPYVFTASLPPSVVATAATSIRKLMHAGDKRAHLWKNSRRLHQGLRDMGY 317
Query: 401 QIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP 460
           ++G   E   S II + + + A    +   LL E G YV     P  P G   +R +   
Sbjct: 318 KLG--TETAQSAIIAVILTDMAQAVALWQGLL-EAGLYVNTARPPATPAGMFLLRCSLCA 374
Query: 461 FHTREMIDKFV 471
            H+ E +++ +
Sbjct: 375 EHSDEQVEQIL 385

>pdb|2W8V|A Chain A, Spt With Plp, N100w Length = 427

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
            YG  GA I    G + N+ IIS     G  V  +   HAS+  G +  +A  + +RHN 
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
           V  L + L  +  +  KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
            +G G+ E  G    +D + GT   + G +GG++V      + +R     +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
           V+A A  +IR L +    E R +       L   L  +GF +  E   S I+ + + +  
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
               +   LL + G YV     P  P G   +R +    HT   I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401

>pdb|2W8U|A Chain A, Spt With Plp, N100y Length = 427

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
            YG  GA I    G + N+ IIS     G  V  +   HAS+  G +  +A  + +RHN 
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
           V  L + L  +  +  KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
            +G G+ E  G    +D + GT   + G +GG++V      + +R     +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
           V+A A  +IR L +    E R +       L   L  +GF +  E   S I+ + + +  
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
               +   LL + G YV     P  P G   +R +    HT   I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401

>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal Aldimine Length = 422

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
            YG  GA I    G + N+ IIS     G  V  +   HAS+  G +  +A  + +RHN 
Sbjct: 122 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 180
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
           V  L + L  +  +  KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G
Sbjct: 181 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 240
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
            +G G+ E  G    +D + GT   + G +GG++V      + +R     +IFT SLPP+
Sbjct: 241 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 300
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
           V+A A  +IR L +    E R +       L   L  +GF +  E   S I+ + + +  
Sbjct: 301 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 358
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
               +   LL + G YV     P  P G   +R +    HT   I
Sbjct: 359 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 402

>pdb|2W8T|A Chain A, Spt With Plp, N100c Length = 427

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 11/285 (3%)
Query: 190 LYGEHGAGIGERDGQLHNMDIIS-----GTLVNPEVAIHASMIQGIRNSSAPKIIYRHND 244
            YG  GA I    G + N+ IIS     G  V  +   HAS+  G +  +A  + +RHN 
Sbjct: 121 FYGTTGA-IVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG 304
           V  L + L  +  +  KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G
Sbjct: 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFG 239
Query: 305 EHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
            +G G+ E  G    +D + GT   + G +GG++V      + +R     +IFT SLPP+
Sbjct: 240 PNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPS 299
Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV--EHTPSHIIPIKIGNPA 422
           V+A A  +IR L +    E R +       L   L  +GF +  E   S I+ + + +  
Sbjct: 300 VVATATTSIRKLMTAH--EKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE 357
Query: 423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI 467
               +   LL + G YV     P  P G   +R +    HT   I
Sbjct: 358 QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401

>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase Length = 384

Iteration: 1
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 4/249 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HAS+++    S +    + HNDV HL ++L +      ++V  E V SM G   PL E+ 
Sbjct: 133 HASLLEAASLSPSQLRRFAHNDVTHLARLLAS-PCPGQQMVVTEGVFSMDGDSAPLAEIQ 191
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
           +V+ QH     VD+ H  G+ GE G G      Q    +++  T GK FG  G  ++ + 
Sbjct: 192 QVTQQHNGWLMVDDAHGTGVIGEQGRGSCWL--QKVKPELLVVTFGKGFGVSGAAVLCSS 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
              D +  +A   I++TS+PP      R ++ ++ S EG   R K   ++   R  +  +
Sbjct: 250 TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL 309
Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
            F +  + S I P+ +G+ +   ++ +  L+++G +V  I  PTVP G  ++RL  T  H
Sbjct: 310 PFTLADSCSAIQPLIVGDNSRALQLAEK-LRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368
Query: 463 TREMIDKFV 471
             + ID+ +
Sbjct: 369 EMQDIDRLL 377

>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or 7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or Kapa). The Enzyme Of Biotin Biosynthetic Pathway. Length = 384

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 4/249 (1%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           HAS+++    S +    + HNDV HL ++L +      ++V  E V SM G   PL E+ 
Sbjct: 133 HASLLEAASLSPSQLRRFAHNDVTHLARLLAS-PCPGQQMVVTEGVFSMDGDSAPLAEIQ 191
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
           +V+ QH     VD+ H  G+ GE G G      Q    +++  T GK FG  G  ++ + 
Sbjct: 192 QVTQQHNGWLMVDDAHGTGVIGEQGRGSCWL--QKVKPELLVVTFGKGFGVSGAAVLCSS 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI 402
              D +  +A   I++TS+PP      R ++ ++ S EG   R K   ++   R  +  +
Sbjct: 250 TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL 309
Query: 403 GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH 462
            F +  + S I P+ +G+ +   ++ +  L+++G +V  I  PTVP G  ++RL  T  H
Sbjct: 310 PFTLADSCSAIQPLIVGDNSRALQLAEK-LRQQGCWVTGIRPPTVPAGIARLRLTLTAAH 368
Query: 463 TREMIDKFV 471
             + ID+ +
Sbjct: 369 EMQDIDRLL 377

>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase (biof) From Francisella Tularensis Length = 399

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 20/252 (7%)
Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 281
           IHAS+I GI+ S A    Y+H  ++ L  + +         +  E V S +G+I  L +L
Sbjct: 144 IHASIIDGIKLSQAKLRRYKHQQLSQLQDIYDG-----KSFITTEGVFSTSGSITQLDKL 198
Query: 282 CEVSHQHGALTFVDEVHAVGLYGEHGAG-IGERDGQLHNMDIISGTLGKAFGNIGGYIVG 340
            +++ +      VDE H+ G+ G++G G I        N  I    LGKAFG +G  +  
Sbjct: 199 AKITPEK---LIVDEAHSFGVLGKNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVVCT 255
Query: 341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI 400
           T+   + +  +A  +I+TT+LPP +L  A   I++ + +   + RA+ Q  + +  NEL 
Sbjct: 256 TEAIAEYLIQFARNYIYTTALPPMILKAA--LIQLKNLENVNDNRARLQQNITFF-NELC 312
Query: 401 QIGFPVEHTPSHIIPIK---IGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA 457
                +E     + PI+   + N  L  ++ D L + K   V    YPTVP  +  +R +
Sbjct: 313 DAK-DLELVSKDLSPIRSIQLNNANLAIRLKDKLFENK-IIVSXFRYPTVPKDQAILRFS 370
Query: 458 PTPFHTREMIDK 469
               H+    D+
Sbjct: 371 ---LHSNNTFDQ 379

>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa Length = 409

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           H S+ +G R ++A    + HN+ +HL  +++      P ++  ++++S  G I PL EL 
Sbjct: 153 HMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELV 209
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
            +S + G    VDE H++G +G +GAG+    G    +  ++ +L K F    G I    
Sbjct: 210 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCNN 269
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY-LRNELIQ 401
                +   +   IF+++L P   AG    + I+ S +    R +H D +A  LR  L Q
Sbjct: 270 EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADN---RRQHLDRMARKLRIGLSQ 326
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
           +G  +  + S II ++ G+     K+ D  L+  G +      P     +  IRL+    
Sbjct: 327 LGLTIR-SESQIIGLETGDERNTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSD 384
Query: 462 HTREMIDKFV 471
              E I K +
Sbjct: 385 VNDEQIAKII 394

>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa Length = 393

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           H S+ +G R ++A    + HN+ +HL  +++      P ++  ++++S  G I PL EL 
Sbjct: 133 HMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELV 189
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
            +S + G    VDE H++G +G +GAG+    G    +  ++ +L K F    G I    
Sbjct: 190 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCNN 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY-LRNELIQ 401
                +   +   IF+++L P   AG    + I+ S +    R +H D +A  LR  L Q
Sbjct: 250 EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADN---RRQHLDRMARKLRIGLSQ 306
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
           +G  +  + S II ++ G+     K+ D  L+  G +      P     +  IRL+    
Sbjct: 307 LGLTI-RSESQIIGLETGDERNTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSD 364
Query: 462 HTREMIDKFV 471
              E I K +
Sbjct: 365 VNDEQIAKII 374

>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa Length = 389

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%)
Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC 282
           H S+ +G R ++A    + HN+ +HL  +++      P ++  ++++S  G I PL EL 
Sbjct: 133 HMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYSTLGTIAPLAELV 189
Query: 283 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTK 342
            +S + G    VDE H++G +G +GAG+    G    +  ++ +L K F    G I    
Sbjct: 190 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCNN 249
Query: 343 NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY-LRNELIQ 401
                +   +   IF+++L P   AG    + I+ S +    R +H D +A  LR  L Q
Sbjct: 250 EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADN---RRQHLDRMARKLRIGLSQ 306
Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
           +G  +  + S II ++ G+     K+ D  L+  G +      P     +  IRL+    
Sbjct: 307 LGLTIR-SESQIIGLETGDERNTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSD 364
Query: 462 HTREMIDKFV 471
              E I K +
Sbjct: 365 VNDEQIAKII 374

>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus Horikoshii Ot3 Length = 386

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 269 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG 328
            + TG + PL EL +V+ +H  L FVD V A+G     GA I         +D++  +  
Sbjct: 156 ETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMG-----GADI---KFDKWGLDVVFSSSQ 207
Query: 329 KAFGNIGGYIVG--TKNFIDTIRSYAA-GFIF--------------TTSLPPT-VLAGAR 370
           KAFG   G  +G  ++ F++        G+ F              T S PP   + G  
Sbjct: 208 KAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGIN 267
Query: 371 EAIRILSSQEGVELRAK-HQDIVAYLRNELIQIGFPVEHTPSHIIP 415
            A+RI+    G E   + ++     +R  + +IG  +   P H  P
Sbjct: 268 VALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESP 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	1e-140
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	3e-93
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	1e-117
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	7e-74
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	1e-108
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	1e-69
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	1e-101
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	2e-63
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	1e-91
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	7e-57
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	1e-89
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	4e-55
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	7e-87
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	9e-54
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	1e-08
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	6e-06
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	1e-08
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	4e-04
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	3e-08
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	5e-05
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	4e-06
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	6e-06
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	3e-04
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	8e-06
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	5e-04
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	5e-05
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	6e-05
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	2e-04
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	3e-04
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	2e-04
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	2e-04
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	3e-04
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	3e-04
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	3e-04
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	3e-04
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	3e-04
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	3e-04
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	3e-04
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	3e-04
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	5e-04
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	8e-04
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	8e-04

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401

 Score =  409 bits (1054), Expect = e-140
 Identities = 127/270 (47%), Positives = 177/270 (65%), Gaps = 6/270 (2%)

Query: 218 PEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 271
           P + I      HASMI+GI+ ++ PK I+RHNDV HL +++   D   PKL+AFE+V+SM
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 190

Query: 272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF 331
            G   P+KE+C+++ + GALT++DEVHAVG+YG  GAG+ ERDG +H +DI +GTL KA+
Sbjct: 191 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY 250

Query: 332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI 391
           G  GGYI  +   +D +RSYA GFIF+TSLPP + AGA+ +I  L + EG +LR   Q  
Sbjct: 251 GVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMH 310

Query: 392 VAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE 451
              L+  L  +G P+    SHI+P+ IG+P     + DMLL + G YVQPIN+PTVP G 
Sbjct: 311 AKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGT 370

Query: 452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
           E++R  P+P H  + ID  V  +  +W   
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401

 Score =  288 bits (740), Expect = 3e-93
 Identities = 105/205 (51%), Positives = 144/205 (70%), Gaps = 6/205 (2%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           EALE  G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+TL TL  + 
Sbjct: 71  EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
           PGL   SD+ NHASMI+GI+ ++ PK I+RHNDV HL +++   D   PKL+AFE+V+SM
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 190

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL---- 215
            G   P+KE+C+++ + GALT++DEVHAVG+YG  GAG+ ERDG +H +DI +GTL    
Sbjct: 191 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY 250

Query: 216 --VNPEVAIHASMIQGIRNSSAPKI 238
                 +A  A M+  +R+ +   I
Sbjct: 251 GVFGGYIAASARMVDAVRSYAPGFI 275

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409

 Score =  349 bits (899), Expect = e-117
 Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 14/285 (4%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           N+ ++  T+  P   +      H S+ +G R ++A    + HN+ +HL  +++      P
Sbjct: 132 NVGLLQ-TICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---P 187

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
            ++  ++++S  G I PL EL  +S + G    VDE H++G +G +GAG+    G    +
Sbjct: 188 GIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREV 247

Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
             ++ +L K F    G I         +   +   IF+++L P   AG    + I+  + 
Sbjct: 248 HFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII--ES 305

Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQ 440
               R     +   LR  L Q+G  +  + S II ++ G+     K+ D L    G +  
Sbjct: 306 ADNRRQHLDRMARKLRIGLSQLGLTI-RSESQIIGLETGDERNTEKVRDYLE-SNGVFGS 363

Query: 441 PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLPL 485
               P     +  IRL+       E I K +          D   
Sbjct: 364 VFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFYF 408

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409

 Score =  238 bits (610), Expect = 7e-74
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 5/176 (2%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           ++L +       + +   N      +E+ +AK    +  L+  S + AN   L T+ +  
Sbjct: 84  KSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ-- 141

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
           P  +   D   H S+ +G R ++A    + HN+ +HL  +++      P ++  ++++S 
Sbjct: 142 PNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHG---PGIIVVDSIYST 198

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
            G I PL EL  +S + G    VDE H++G +G +GAG+    G    +  ++ +L
Sbjct: 199 LGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASL 254

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score =  328 bits (843), Expect = e-108
 Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 12/285 (4%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           N+ IIS TL      +      HAS+  G +  +A  + +RHN V  L + L  +  +  
Sbjct: 137 NLGIIS-TLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPA 195

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
           KLV  E V+SM G I PLKE+  V+ +HGA+  VDE H++G +G +G G+ E  G    +
Sbjct: 196 KLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQI 255

Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
           D + GT  K+ G +GG++V      + +R     +IFT SLPP+V+A A  +IR L    
Sbjct: 256 DFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKL--MT 313

Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTP--SHIIPIKIGNPALNTKICDMLLKEKGHY 438
             E R +       L   L  +GF +      S I+ + + +      +   LL + G Y
Sbjct: 314 AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALL-DGGLY 372

Query: 439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
           V     P  P G   +R +    HT   I   +    A  +++ +
Sbjct: 373 VNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score =  227 bits (582), Expect = 1e-69
 Identities = 65/176 (36%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           EALEKFG+G  G+R ++G    H ++E+ +   +     +VF++ Y+AN   + TL    
Sbjct: 89  EALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAG-- 146

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
            G + I DA +HAS+  G +  +A  + +RHN V  L + L  +  +  KLV  E V+SM
Sbjct: 147 KGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSM 206

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
            G I PLKE+  V+ +HGA+  VDE H++G +G +G G+ E  G    +D + GT 
Sbjct: 207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score =  310 bits (796), Expect = e-101
 Identities = 100/286 (34%), Positives = 161/286 (56%), Gaps = 12/286 (4%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           N  +   TL+ PE AI      HAS+I GIR   A +  Y++N +  L   L+  D K  
Sbjct: 116 NGGLFE-TLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGA 174

Query: 261 --KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
             KL+A + V SM G I  LK +C+++ ++ AL  VD+ HAVG  GE+G G  E  G   
Sbjct: 175 RFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVAD 234

Query: 319 NMDIISGTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
            +DI++GTLGKA  G  GGY  G K  I+ +R+ +  ++F+ ++ P ++A + + + +L 
Sbjct: 235 RVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK 294

Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
           + EG +LR + Q+   Y R  + ++GF +      IIP+ +G+  L T + D LL ++G 
Sbjct: 295 T-EGPQLRKQLQENSRYFRAGMEKLGFQLVPGNHPIIPVMLGDAQLATNMADHLL-QEGI 352

Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
           YV   +YP VP+G+ +IR+  +  HT++ +D+ +     V K L  
Sbjct: 353 YVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLGA 398

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score =  210 bits (538), Expect = 2e-63
 Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 4/178 (2%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
             +E++G G    R I G    H++LE+D+++    +  ++++SC+ AN     TL  + 
Sbjct: 68  TVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETL--LG 125

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAFETVH 157
           P    ISD  NHAS+I GIR   A +  Y++N +  L   L+  D K    KL+A + V 
Sbjct: 126 PEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVF 185

Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
           SM G I  LK +C+++ ++ AL  VD+ HAVG  GE+G G  E  G    +DI++GTL
Sbjct: 186 SMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTL 243

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score =  284 bits (728), Expect = 1e-91
 Identities = 76/277 (27%), Positives = 131/277 (47%), Gaps = 11/277 (3%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           N  +I+  ++  E  I      HAS+++    S +    + HNDV HL ++L +      
Sbjct: 112 NQAVIA-AMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPG-Q 169

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
           ++V  E V SM G   PL E+ +V+ QH     VD+ H  G+ GE G G           
Sbjct: 170 QMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKP 227

Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
           +++  T GK FG  G  ++ +    D +  +A   I++TS+PP      R ++ ++ S E
Sbjct: 228 ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDE 287

Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQ 440
           G   R K   ++   R  +  + F +  + S I P+ +G+ +   ++ + L  ++G +V 
Sbjct: 288 GDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLR-QQGCWVT 346

Query: 441 PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477
            I  PTVP G  ++RL  T  H  + ID+ +  L   
Sbjct: 347 AIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score =  193 bits (493), Expect = 7e-57
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           +  E+FG G+GG+ ++SG S+ H+ LEE++A+       L+F S + AN + +  +  M 
Sbjct: 64  QGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM--MA 121

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
                 +D  +HAS+++    S +    + HNDV HL ++L +      ++V  E V SM
Sbjct: 122 KEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPG-QQMVVTEGVFSM 180

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
            G   PL E+ +V+ QH     VD+ H  G+ GE G G           +++  T 
Sbjct: 181 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTF 234

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score =  279 bits (715), Expect = 1e-89
 Identities = 83/284 (29%), Positives = 139/284 (48%), Gaps = 10/284 (3%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           N+  +S  L+     I      HAS+I G R S +  I Y HN++  L   L  +     
Sbjct: 116 NLGPLS-CLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSA 174

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 320
           KL+  + + SM G I  L EL  ++++  A   VD+ H++G+ G  GAG     G   ++
Sbjct: 175 KLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDV 234

Query: 321 DIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQE 380
           D+I GT  K+  ++GG++ G  + ID ++  A   +F+ S+ P  +A   +A+ I+  Q 
Sbjct: 235 DLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEII--QN 292

Query: 381 GVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQ 440
             E   K      Y + +L+  GF +  T S I+PI I +      +  ML  + G +V 
Sbjct: 293 EPEHIEKLWKNTDYAKAQLLDHGFDLGATESPILPIFIRSNEKTFWVTKMLQ-DDGVFVN 351

Query: 441 PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDLP 484
           P+  P VP  E  IR +    HT + ID+ +  ++ V+K  ++ 
Sbjct: 352 PVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEVE 395

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score =  188 bits (481), Expect = 4e-55
 Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 2/176 (1%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           +ALEK+GTG  G+R ++G    H +LEE ++    KEA ++F++ + +N   L  L  M 
Sbjct: 68  DALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCL--MG 125

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
              + + D  +HAS+I G R S +  I Y HN++  L   L  +     KL+  + + SM
Sbjct: 126 RNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSM 185

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
            G I  L EL  ++++  A   VD+ H++G+ G  GAG     G   ++D+I GT 
Sbjct: 186 EGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF 241

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score =  272 bits (697), Expect = 7e-87
 Identities = 91/286 (31%), Positives = 143/286 (50%), Gaps = 13/286 (4%)

Query: 207 NMDIISGTLVNPEVAI------HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP 260
           N  +   TL+  E AI      HAS+I G+R   A +  Y +ND+  L   L+       
Sbjct: 118 NGGLFE-TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGA 176

Query: 261 --KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
              L+A + V SM G I  LK +C+++ ++ AL  VD+ HAVG  GE+G G  E    + 
Sbjct: 177 RHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG 236

Query: 319 NMDIISGTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS 377
            +DII+GTLGKA  G  GGY    K  ++ +R  +  ++F+ SL P ++A + + + ++ 
Sbjct: 237 RVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV- 295

Query: 378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGH 437
            + G ELR +        R ++   GF +      IIP+ +G+  +  K    L  ++G 
Sbjct: 296 -EAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQ-KEGI 353

Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
           YV    YP VP G+ +IR   +  HT E I + V     + K L +
Sbjct: 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV 399

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score =  185 bits (472), Expect = 9e-54
 Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
             ++  G G    R I G    H++LE+ +A     E  ++++SC+ AN     TL  + 
Sbjct: 70  AGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETL--LG 127

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP--KLVAFETVH 157
                ISDA NHAS+I G+R   A +  Y +ND+  L   L+          L+A + V 
Sbjct: 128 AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVF 187

Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
           SM G I  LK +C+++ ++ AL  VD+ HAVG  GE+G G  E    +  +DII+GTL
Sbjct: 188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTL 245

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 43/241 (17%)

Query: 253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE 312
           E        L          G +  +K++ +V  ++     V+          +  G   
Sbjct: 141 ETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGA--------YAIGRMP 192

Query: 313 RDGQLHNMDIISGTLGKAFGNIG--GYIVGTKNFIDTIRSYAAGF---------IFTTSL 361
              +    D I G+  K+    G  G +   + + + +   +  +               
Sbjct: 193 VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGA 252

Query: 362 PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF------PVEHTPSHI-- 413
               L  +   +R     E ++   +  +       E+ ++G       P  H       
Sbjct: 253 TIITLMASFPHVR-----ERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHA 307

Query: 414 -IPIKIGNPALNTKICDM--LLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF 470
            +  +I   A   +      L   K H ++P        G  +     T   + E +D  
Sbjct: 308 EVLYEISKKAKGGRFFLYRELKSRKIHGIKP--------GLTRYFKLSTYGLSDEEVDYV 359

Query: 471 V 471
           +
Sbjct: 360 L 360

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 141 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           E        L          G +  +K++ +V  ++     V+  +A+G
Sbjct: 141 ETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIG 189

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 36/195 (18%)

Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           DV  +  +L   D  I   +A   VHS   TG + P+ E+  ++H++G    VD + + G
Sbjct: 118 DVQAIDAILNA-DPTI-SHIAM--VHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFG 173

Query: 302 LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGG--YIVGTKNFIDTIRSYAAGFIFTT 359
                  GI      L ++D +  +  K    + G  +++  +  +   + ++       
Sbjct: 174 -------GIPMDIAAL-HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDL 225

Query: 360 SL---------------PPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQI 402
                             PT  +    +A++ L+ + GV  R  ++Q     L   +  +
Sbjct: 226 YAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL 285

Query: 403 GFPV---EHTPSHII 414
           GF     +   S II
Sbjct: 286 GFNTLLDDELHSPII 300

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           DV  +  +L   D  I   +A   VHS   TG + P+ E+  ++H++G    VD + + G
Sbjct: 118 DVQAIDAILNA-DPTI-SHIAM--VHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFG 173

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 60/275 (21%)

Query: 240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA 299
           Y    V+   ++ + +D     +V    V+  TG +  ++ L  +SH+ GAL   D  H+
Sbjct: 147 YTLRLVDSPEELPQAIDQDT-AVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHS 205

Query: 300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF----GNIGGYIVGTKNFIDTIRSYAAGF 355
            G            D      D   G   K      G+     V +    D +    +G+
Sbjct: 206 AGAV--------PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWV-SPQLCDLVPQPLSGW 256

Query: 356 I--------------------FTTSLPPTV-LAGAREAIRILSSQEGVELRAKHQDIVAY 394
                                +     P   LA     + + +  +   LR K   +   
Sbjct: 257 FGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDL 316

Query: 395 LRNELIQIGFPVE---HTP------SHIIPIKIGNPALNTKICDMLLKEK--GHYVQPIN 443
               + Q     E    TP         +  +         +   L+     G Y +P  
Sbjct: 317 FIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGY---AVIQALIDRGVIGDYREP-- 371

Query: 444 YPTVPVGEEKIRLAPTPFHTREM-IDKFVTDLLAV 477
                     +R   TP +T    +   V  L  +
Sbjct: 372 --------RIMRFGFTPLYTTFTEVWDAVQILGEI 398

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 105 ISDAGNHAS---MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG 161
           +++  N  +   + +G+  +   +  Y    V+   ++ + +D     +V    V+  TG
Sbjct: 123 VTETSNFPTDLYIAEGL--ADMLQQGYTLRLVDSPEELPQAIDQDT-AVVMLTHVNYKTG 179

Query: 162 AICPLKELCEVSHQHGALTFVDEVHAVG 189
            +  ++ L  +SH+ GAL   D  H+ G
Sbjct: 180 YMHDMQALTALSHECGALAIWDLAHSAG 207

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 51/280 (18%), Positives = 83/280 (29%), Gaps = 52/280 (18%)

Query: 236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
           P+       +  + +V+E        ++ F  VH  TG    +  + +     G     D
Sbjct: 192 PREGEETLRIEDILEVIEKEG-DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFD 250

Query: 296 EVHAVGLYGE--HGAGIGERDGQLHNMDIISGTLGKAFGNI---------------GGYI 338
             HAVG      H  G+       +   + +G  G A   I                G+ 
Sbjct: 251 LAHAVGNVELYLHDWGVDFACWCSYKY-LNAGAGGIAGAFIHEKHAHTIKPALVGWFGHE 309

Query: 339 VGTKNFIDTIRSYAAGFI-FTTSLPPTV-LAGAREAIRILSSQEGVELRAKHQDIVAYLR 396
           + T+  +D       G   F  S PP + +     ++ I        LR K   +  YL 
Sbjct: 310 LSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLE 369

Query: 397 NELIQIGFPVEH----------TPSH------IIPIKIGNPALNTKICDMLLKEK--GHY 438
             +       +           TPSH       + I    P     +   L K       
Sbjct: 370 YLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNK--DVFQELEKRGVVCDK 427

Query: 439 VQPINYPTVPVGEEKIRLAPTPFHTREM-IDKFVTDLLAV 477
             P            IR+AP P +     + KF   L ++
Sbjct: 428 RNP----------NGIRVAPVPLYNSFHDVYKFTNLLTSI 457

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 32/181 (17%)

Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 303
           D   + + L+    ++  LV  ET  S TG + P + +  ++ + GAL F+D V  +G  
Sbjct: 112 DPEAVARALKRRRYRMVALVHGET--S-TGVLNPAEAIGALAKEAGALFFLDAVTTLG-- 166

Query: 304 GEHGAGIGERDGQLHNMDIISGTLGKAFGNIGG------------YIVGTK----NFIDT 347
                           +D       K      G               G +    +    
Sbjct: 167 ---MLPF-SMRAM--GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARV 220

Query: 348 IRSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFP 405
              +  G    T   P  +     EA+ ++  +EGV  R  + +++ A++  EL   GF 
Sbjct: 221 AEHWERGGYHHT--TPVLLHYALLEALDLV-LEEGVAARERRAREVYAWVLEELKARGFR 277

Query: 406 V 406
            
Sbjct: 278 P 278

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           D   + + L+    ++  LV  ET  S TG + P + +  ++ + GAL F+D V  +G
Sbjct: 112 DPEAVARALKRRRYRMVALVHGET--S-TGVLNPAEAIGALAKEAGALFFLDAVTTLG 166

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 46/192 (23%)

Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY 303
               + + +   + K+  L   ET  S TG   P+K++     ++  L  VD V +VG  
Sbjct: 115 KPGEVEEEVRKSEYKLVALTHVET--S-TGVREPVKDVINKIRKYVELIVVDGVSSVG-- 169

Query: 304 GEHGAGIGERDGQLHNMD------IISGT---LG------------------KAFGNIGG 336
                       +    +       ++ +   LG                   +  +I G
Sbjct: 170 -----------AEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAG 218

Query: 337 YIVGTKNFIDTIRSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAY 394
           Y +  +N++  +R    G     + PP  V+    EA R++  +EG+E R  +H  + + 
Sbjct: 219 YYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLI-EKEGIENRIKRHTMVASA 277

Query: 395 LRNELIQIGFPV 406
           +R  L  +G  +
Sbjct: 278 IRAGLEALGLEI 289

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
               + + +   + K+  L   ET  S TG   P+K++     ++  L  VD V +VG
Sbjct: 115 KPGEVEEEVRKSEYKLVALTHVET--S-TGVREPVKDVINKIRKYVELIVVDGVSSVG 169

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 53/201 (26%)

Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
               L +       +    +          T  +     + E   ++      D V A  
Sbjct: 133 TKEKLYEYDN----QNFTGLLV--NVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFL 186

Query: 302 LYGEHGAGIGERDGQLHNMD------IISGTLGKAFGN---IGGYIVGTK---------- 342
                            NM+      +I+G+  K       I   ++  +          
Sbjct: 187 -------------ADPFNMNECGADVMITGS-QKVLACPPGISVIVLAPRGVERVEKSKV 232

Query: 343 -----NFIDTIRSYAAG-FIFTTSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAY 394
                +  D +++   G   FT   P   +L    E ++ +    G +   A+     A 
Sbjct: 233 RTMYFDLKDALKNQERGQTPFT---PAVGILLQINERLKEIKKHGGADAEVARIASQAAD 289

Query: 395 LRNELIQIGF-PVEHTPSHII 414
            R ++  + F  V  +P++ +
Sbjct: 290 FRAKIKDLPFELVSESPANGV 310

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
           +LVA  +     G +  L+ + ++ H  GAL  VD   A 
Sbjct: 167 RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAA 206

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 261 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 300
           +LVA  +     G +  L+ + ++ H  GAL  VD   A 
Sbjct: 167 RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAA 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 61/422 (14%), Positives = 125/422 (29%), Gaps = 110/422 (26%)

Query: 6   MCLNFKQVHKSN-----RVTCRLSSVQYKV-----PKGGRKCL--------GEALEKFG- 46
           +         S       +  R+ S+Q ++      K    CL         +A   F  
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 47  ------TGAGGTRN------ISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT 94
                 T    TR       +S  +  H  L+     L   E   +              
Sbjct: 265 SCKILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---------- 310

Query: 95  LGKMIPGLHYISDAGN--HASMIQGIRNSSAPKII--YRHNDVNHLTQVLEN-MDVKIP- 148
           L      L       N    S+I              ++H + + LT ++E+ ++V  P 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 149 -------KLVAF-ETVHSMTGAICPL-----KELCEVSHQHGALTFVDEVHAVGLYGEHG 195
                  +L  F  + H  T  +  +     K    V         V+++H   L  +  
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--------VVNKLHKYSLVEKQP 421

Query: 196 AGIGERDGQLHNMDIISGTLVNPEVAIHASMI---QGIRNSSAPKIIYRHND-------V 245
               E    + ++ +     +  E A+H S++      +   +  +I  + D        
Sbjct: 422 K---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 246 NHLTQVLENMDVKIPKLVAFETV----HSMTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           +HL   +E+ +    ++  F  V      +   I         S   G++   + +  + 
Sbjct: 479 HHLKN-IEHPE----RMTLFRMVFLDFRFLEQKIRHDSTAWNAS---GSIL--NTLQQLK 528

Query: 302 LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIR---SYAAGFIFT 358
            Y  +   I + D +   +      +      I   ++ +K + D +R         IF 
Sbjct: 529 FYKPY---ICDNDPKYERL---VNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFE 581

Query: 359 TS 360
            +
Sbjct: 582 EA 583

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 34/170 (20%)

Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQL 317
             +V+    H    +G I P+  +  +   HGA   VD V + G     G      +   
Sbjct: 135 ITVVSV--CHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFG-----GMKT-HPEDC- 185

Query: 318 HNMDIISGTLGKAFGNIGG-----------------YIVGTKNFID--TIRSYAAGFIFT 358
              DI      K  G   G                  +    + +      +  +     
Sbjct: 186 -KADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPF 244

Query: 359 TSLPPT-VLAGAREAIRILSSQEGVELR-AKHQDIVAYLRNELIQIGFPV 406
              P    + G   A+ +    EG E   A+H      +R  +  +G  V
Sbjct: 245 PFTPSVSEINGLDVALDLY-LNEGPEAVWARHALTAKAMRAGVTAMGLSV 293

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
             +V+    H    +G I P+  +  +   HGA   VD V + G
Sbjct: 135 ITVVSV--CHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFG 176

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           P L+    VH    TG + PL    E+ H++  L  VD V ++G
Sbjct: 149 PVLLFL--VHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLG 190

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           P L+    VH    TG + PL    E+ H++  L  VD V ++G
Sbjct: 149 PVLLFL--VHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLG 190

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 136 LTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           L  +   +++  PK +     H    +G + PL+ + ++ HQH  L  VD V ++ 
Sbjct: 132 LETLARAIELHQPKCLFL--THGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC 185

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 248 LTQVLENMDVKIPKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           L  +   +++  PK +     H    +G + PL+ + ++ HQH  L  VD V ++ 
Sbjct: 132 LETLARAIELHQPKCLFL--THGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC 185

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           P ++          TG +  L+ +  + HQH  L  VD V ++G
Sbjct: 145 PSVLFL--TQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLG 186

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           P ++          TG +  L+ +  + HQH  L  VD V ++G
Sbjct: 145 PSVLFL--TQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLG 186

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           PK+VA   VH    TG I PLK + E      AL  VD V  +G
Sbjct: 137 PKIVAM--VHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG 178

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           PK+VA   VH    TG I PLK + E      AL  VD V  +G
Sbjct: 137 PKIVAM--VHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG 178

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           P ++A   VH+   TGA  PL+ + E+  + G L  VD V ++G
Sbjct: 160 PAILAL--VHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG 201

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           P ++A   VH+   TGA  PL+ + E+  + G L  VD V ++G
Sbjct: 160 PAILAL--VHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG 201

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 40/190 (21%)

Query: 244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAV 300
               +   +  +      +V    V + +G I     +K L E  H  G L  +D + + 
Sbjct: 120 APVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASG 179

Query: 301 GLYGEHGA-GIGERDGQLHNMDI-ISGTLGKAFG---------------------NIGGY 337
            ++ +    GI          D+ IS    K +                          +
Sbjct: 180 CVWLDMKELGI----------DVLISAP-QKGWSSTPCAGLVMLSAAAIKKVESTESNCF 228

Query: 338 IVGTKNFIDTIRSYAAGFIFTTSLPPT-VLAGAREAIRILSSQEGVE-LRAKHQDIVAYL 395
            +  K ++  +R+Y  G     +  PT  L   R+AI     + G + LR    ++   +
Sbjct: 229 SLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA-KEIGFDILRDAQWELGNRV 287

Query: 396 RNELIQIGFP 405
           R  L   G  
Sbjct: 288 RKVLTDKGIE 297

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 148 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 189
           P+L+    V     T  + PL EL E+  ++ AL + D   ++G
Sbjct: 139 PRLLLT--VQGDTSTTMLQPLAELGEICRRYDALFYTDATASLG 180

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 260 PKLVAFETVHS--MTGAICPLKELCEVSHQHGALTFVDEVHAVG 301
           P+L+    V     T  + PL EL E+  ++ AL + D   ++G
Sbjct: 139 PRLLLT--VQGDTSTTMLQPLAELGEICRRYDALFYTDATASLG 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.98
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.98
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.98
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.98
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.98
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.97
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.97
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.97
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.97
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.97
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.97
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.97
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.97
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.97
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.97
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.97
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.97
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.97
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.97
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.97
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.97
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.97
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.97
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.97
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.97
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.97
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.97
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.97
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.97
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.97
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.97
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.97
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.97
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.97
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.97
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.97
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.97
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.97
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.97
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.97
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.97
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.97
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.97
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.97
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.97
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.97
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.97
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.97
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.97
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.97
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.97
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.97
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.97
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.97
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.97
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.97
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.97
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.96
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.96
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.96
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.96
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.96
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.96
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.96
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.96
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.96
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.96
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.96
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.96
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.96
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.96
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.96
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.96
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.96
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.96
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.96
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.96
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.96
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.96
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.96
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.96
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.96
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.96
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.96
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.96
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.96
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.95
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.95
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.95
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.95
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.95
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.95
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.95
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.95
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.95
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.95
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.95
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.95
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.95
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.95
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.95
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.95
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.95
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.95
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.95
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.95
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.95
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.95
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.95
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.95
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.9
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.94
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.94
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.9
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.94
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
1svv_A	359	Threonine aldolase; structural genomics, structura	99.94
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.94
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.94
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.94
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.94
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.94
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.94
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.94
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.94
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.94
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.94
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.94
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.94
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.94
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.94
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.94
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.94
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.93
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.93
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.93
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.93
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.93
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.93
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.93
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.93
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.93
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.93
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.93
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.93
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.93
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.93
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.93
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.93
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.93
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.93
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.93
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.93
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.93
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.93
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.92
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.92
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.92
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.92
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.92
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.92
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.92
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.92
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.92
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.92
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.92
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.92
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.91
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.91
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.91
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.91
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.91
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.91
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.91
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.9
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.9
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.9
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.9
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.9
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.9
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.9
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.9
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.89
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.89
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.89
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.88
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.88
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.88
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.88
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.87
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.87
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.87
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.87
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.87
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.86
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.86
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.86
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.79
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.71
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.69
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	94.39
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	93.04
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	93.01
3hmu_A	472	Aminotransferase, class III; structural genomics,	92.76
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	92.67
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	92.54
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	92.09
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	91.7
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	91.38
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	90.7
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	90.58
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	90.51
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	90.38
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	89.55
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	88.92
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	87.33
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	87.04
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	86.91
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	86.62
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	86.24
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	84.63
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	84.54
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	82.28
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	82.13
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	82.01
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	81.59

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=6.4e-40  Score=335.64  Aligned_cols=355  Identities=33%  Similarity=0.560  Sum_probs=297.9

Q ss_pred             hcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         14 HKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        14 ~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      ..+|+.++||+++++++   +|++.+++.+++.+++...+.+++.+|..+...++++++++++|.++.++++||++|+..
T Consensus        39 ~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~  118 (399)
T 3tqx_A           39 KVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGG  118 (399)
T ss_dssp             EETTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHT
T ss_pred             eeCCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHH
Confidence            34678899999888876   689999999999998877666777788889999999999999999999999999999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++.+  +||.|+++.++|.++..+++..|.+++.++..|+++|++.+.+....                        
T Consensus       119 ~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~------------------------  172 (399)
T 3tqx_A          119 LFETLLG--PEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEK------------------------  172 (399)
T ss_dssp             THHHHCC--TTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTT------------------------
T ss_pred             HHHHhcC--CCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhcc------------------------
Confidence            9988866  99999999999999999888888888777776666666665542210                        


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (399)
T 3tqx_A          173 --------------------------------------------------------------------------------  172 (399)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                            .+++++|++++++||+|.++|+++|.++|++||+++|+||+|+.++.+..+.+..+..+...++|++++|+||+
T Consensus       173 ------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~  246 (399)
T 3tqx_A          173 ------GARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKA  246 (399)
T ss_dssp             ------TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSS
T ss_pred             ------CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHh
Confidence                  12478999999999999999999999999999999999999987776665544444433334789999999999


Q ss_pred             cc-CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC
Q psy16848        331 FG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT  409 (514)
Q Consensus       331 lg-~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  409 (514)
                      ++ +.|||+++++++++.+......+.++.+.++..++++.++++... .+.++.+++++++++++.+.|++.|+++..+
T Consensus       247 ~~g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  325 (399)
T 3tqx_A          247 LGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVPG  325 (399)
T ss_dssp             SCSSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCCC
T ss_pred             cccCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence            98 778999999999998887654444455788888889999998763 5677899999999999999999988888777


Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        410 PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       410 ~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .++++++.+++..+..++.+.|+ ++||.+.++.++..+.+.+++|++++..++++++++++++|++++++++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  397 (399)
T 3tqx_A          326 NHPIIPVMLGDAQLATNMADHLL-QEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG  397 (399)
T ss_dssp             SSSEEEEEEECHHHHHHHHHHHH-HTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHH-HCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence            88888888877656789999996 7999999877655556678999999988999999999999999998864

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=5.1e-40  Score=340.03  Aligned_cols=351  Identities=31%  Similarity=0.482  Sum_probs=295.2

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|+.++||.+++|++   +|++.+++.+++.+++.++++++...|..+...++++++++++|.++.++++||++|+..++
T Consensus        62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al  141 (427)
T 2w8t_A           62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGII  141 (427)
T ss_dssp             TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHH
Confidence            678899999998865   68999999999999887666677777888899999999999999999999999999999998


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++.+  +||.|+++.++|.++..+++..|++++.++++|+++|++.+.+..                            
T Consensus       142 ~~l~~--~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~----------------------------  191 (427)
T 2w8t_A          142 STLAG--KGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLP----------------------------  191 (427)
T ss_dssp             HHHSC--TTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSC----------------------------
T ss_pred             HHhcC--CCCEEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhcc----------------------------
Confidence            88865  999999999999999988888888887777777777766664321                            


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (427)
T 2w8t_A          192 --------------------------------------------------------------------------------  191 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                          ..++++|++++++||+|.+.|+++|.++|++||+++|+||+|+.+..+..+.++.+..++..+.|++++||||++|
T Consensus       192 ----~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g  267 (427)
T 2w8t_A          192 ----KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG  267 (427)
T ss_dssp             ----SSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC
T ss_pred             ----CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc
Confidence                1146899999999999999999999999999999999999999877766555555445444467999999999999


Q ss_pred             CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc-cC-C
Q psy16848        333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE-HT-P  410 (514)
Q Consensus       333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-~  410 (514)
                      +.||++++++++++.+......+.++++.++..++++.++++.+.  ..++++++++++++++.+.|++.|+++. .+ .
T Consensus       268 ~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  345 (427)
T 2w8t_A          268 TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAMGFRLGTETCD  345 (427)
T ss_dssp             SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCC
T ss_pred             cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCC
Confidence            888999999998888776533343455778888888889998764  2467899999999999999998888776 55 6


Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        411 SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       411 ~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      ++++++.+++.....++.+.|+ ++||.+.++..|..+.+.+++|++++..++++++++++++|+++++++..
T Consensus       346 ~~~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~  417 (427)
T 2w8t_A          346 SAIVAVMLEDQEQAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV  417 (427)
T ss_dssp             SSEEEEEESSHHHHHHHHHHHH-HTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEECCHHHHHHHHHHHH-HCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            7788898876556778999996 78999999887766666789999999889999999999999999988764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=6e-40  Score=337.54  Aligned_cols=346  Identities=23%  Similarity=0.293  Sum_probs=290.5

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|+.++||++++|++   +|++.+++.+++++++...+++...+|..+..+++++++++++|.+..++++||++|+..++
T Consensus        57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l  136 (409)
T 3kki_A           57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLL  136 (409)
T ss_dssp             CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence            678899999999985   79999999999999887766777777877888999999999999999999999999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++..  +||.|+++.++|.++..+++..|++++.++..|.++|++.+.+.                             
T Consensus       137 ~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~-----------------------------  185 (409)
T 3kki_A          137 QTICQ--PNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRH-----------------------------  185 (409)
T ss_dssp             HHHCC--TTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHH-----------------------------
T ss_pred             HHhcC--CCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhc-----------------------------
Confidence            88866  99999999999999999888888888877776666666655431                             


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (409)
T 3kki_A          186 --------------------------------------------------------------------------------  185 (409)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                            ++++|++++++||+|.+.++++|.++|++||+++|+||+|+.+.++..+.++....+...++|+++.|+||+++
T Consensus       186 ------~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~  259 (409)
T 3kki_A          186 ------GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFA  259 (409)
T ss_dssp             ------CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred             ------CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhC
Confidence                  24789999999999999999999999999999999999999777766555544434434468999999999999


Q ss_pred             CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc
Q psy16848        333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH  412 (514)
Q Consensus       333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  412 (514)
                      +.||++++++++++.+......+.++.+.++..++++.++++.....  ++++++++++++++.+.|+++++++. +.+.
T Consensus       260 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~  336 (409)
T 3kki_A          260 YRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQLGLTIR-SESQ  336 (409)
T ss_dssp             SSCEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTTCCCC-CSSS
T ss_pred             CCceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCccC-CCCC
Confidence            87899999998888777655554445567888888999999877433  57888999999999999999987765 5677


Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        413 IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       413 ~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      ++++.++......++.+.|+ ++||.+.+..++..+.+.+++|++++..++++++++++++|+++++..+
T Consensus       337 ~~~~~~~~~~~~~~~~~~L~-~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~  405 (409)
T 3kki_A          337 IIGLETGDERNTEKVRDYLE-SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGD  405 (409)
T ss_dssp             EEEEEEESHHHHHHHHHHHH-HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEEeCCHHHHHHHHHHHH-HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcCC
Confidence            88888876555678999996 7899999877665566788999999988999999999999999998753

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=3.6e-38  Score=323.21  Aligned_cols=353  Identities=30%  Similarity=0.483  Sum_probs=284.1

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|+.++||.++.+++   +|++.+++.+++.+++...+.+.+.+|..+...++++.+++++|.++.++++|||+|+..++
T Consensus        43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~  122 (401)
T 1fc4_A           43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLF  122 (401)
T ss_dssp             TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred             CCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHH
Confidence            678899998888876   78999999999998776554445555556888999999999999888899999999998888


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++..  +||.|+++.++|.++..+++..|.+++.++..|.+++++.+.+...                           
T Consensus       123 ~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~---------------------------  173 (401)
T 1fc4_A          123 ETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEARE---------------------------  173 (401)
T ss_dssp             HHHCC--TTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHH---------------------------
T ss_pred             HHHcC--CCCEEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhc---------------------------
Confidence            88865  9999999999999998888888877777766666666655543110                           


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (401)
T 1fc4_A          174 --------------------------------------------------------------------------------  173 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-  331 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-  331 (514)
                         ...++++|++++++||+|.++|+++|.++|++||+++|+||+|+.+..++.+.++.+..+...+.|++++|+||++ 
T Consensus       174 ---~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~  250 (401)
T 1fc4_A          174 ---AGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG  250 (401)
T ss_dssp             ---TTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC
T ss_pred             ---cCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhcc
Confidence               0014789999999999999999999999999999999999999766554333333222333336799999999999 


Q ss_pred             cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848        332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS  411 (514)
Q Consensus       332 g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  411 (514)
                      ++.||++++++++++.+......+.++.+.++..++++.++++.+..  .++.+++++++++++.+.|++.|+++.++.+
T Consensus       251 ~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  328 (401)
T 1fc4_A          251 GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAGADH  328 (401)
T ss_dssp             SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCCSSS
T ss_pred             CCCCEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCC
Confidence            66789999999999888765433333557889999999999987643  3568899999999999999998887776677


Q ss_pred             cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +++++.+++..+..++.+.|. ++||.+.++..+..+.+.+++|++++..++++++++++++|++++++++.
T Consensus       329 ~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  399 (401)
T 1fc4_A          329 AIIPVMLGDAVVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV  399 (401)
T ss_dssp             SEEEEEEECHHHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             CEEEEEcCChHHHHHHHHHHH-HCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            788888876455778999996 88999999887655555679999999889999999999999999988753

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=100.00  E-value=3.5e-38  Score=323.36  Aligned_cols=354  Identities=47%  Similarity=0.824  Sum_probs=280.3

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|+.++|+.++++++   +|++.+++.+++++++.+.+++...++..+...++++++++++|.++.++++||++++..++
T Consensus        44 ~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~  123 (401)
T 2bwn_A           44 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL  123 (401)
T ss_dssp             CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred             CCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHH
Confidence            567889998887764   78999999999998776555555566777889999999999999988899999999888887


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      ..+....+||.|+++.++|.+...+++..|++++.++.+|.++|++.+.+                              
T Consensus       124 ~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~------------------------------  173 (401)
T 2bwn_A          124 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAA------------------------------  173 (401)
T ss_dssp             HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHH------------------------------
T ss_pred             HHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHh------------------------------
Confidence            76542348999999999999999888777777776666555555555433                              


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (401)
T 2bwn_A          174 --------------------------------------------------------------------------------  173 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                        ...+++++|++++++||+|.++|+++|.++|++||+++|+||+|+.|.+++.+.++....+...+.|++++|+||+++
T Consensus       174 --~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~  251 (401)
T 2bwn_A          174 --DDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG  251 (401)
T ss_dssp             --SCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred             --hccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc
Confidence              211347899999999999999999999999999999999999999777666554443223322346899999999999


Q ss_pred             CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc
Q psy16848        333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH  412 (514)
Q Consensus       333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  412 (514)
                      ..|||+++++++++.+......+.++.+.++..++++.++++.+...++++++++++++++++.+.|++.|+++..+.++
T Consensus       252 ~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  331 (401)
T 2bwn_A          252 VFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH  331 (401)
T ss_dssp             SCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS
T ss_pred             CCCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC
Confidence            77899999999988877544333334455668888888999887554567889999999999999998888877777777


Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        413 IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       413 ~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++++.+++..+..++.+.|++++||.+.++..+..+.+.+++|++++..++++|+++++++|+++++++
T Consensus       332 ~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          332 IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence            888888764556788888854789999988765544455799999998899999999999999987653

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=8.3e-38  Score=318.61  Aligned_cols=345  Identities=28%  Similarity=0.446  Sum_probs=276.8

Q ss_pred             cCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccc
Q psy16848         15 KSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDST   91 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~   91 (514)
                      .+|..++||.++.+++   +|++.+++.++++.++...+.+++.+|..+...++++.+++++|.++.++++|||+|+..+
T Consensus        36 ~~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~  115 (384)
T 1bs0_A           36 ADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAV  115 (384)
T ss_dssp             ETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred             ECCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHH
Confidence            4677899999877643   7899999999999876544445555566788999999999999998899999999999989


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++.+  +||.|+++.++|.++..+++..|.+++.++..|.+++++.+.+                             
T Consensus       116 ~~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-----------------------------  164 (384)
T 1bs0_A          116 IAAMMA--KEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLAS-----------------------------  164 (384)
T ss_dssp             HHHHCC--TTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHS-----------------------------
T ss_pred             HHHhCC--CCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh-----------------------------
Confidence            888865  9999999999999999888888877777666666666555432                             


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (384)
T 1bs0_A          165 --------------------------------------------------------------------------------  164 (384)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                         .. ++++++++++++||+|.++|+++|.++|++||+++|+||+|+.+..++.+.++....+  .++|++++|+||++
T Consensus       165 ---~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~di~~~s~sK~~  238 (384)
T 1bs0_A          165 ---PC-PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGF  238 (384)
T ss_dssp             ---CC-SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT--CCCSEEEEESSSTT
T ss_pred             ---cC-CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC--CCCcEEEeeccchh
Confidence               11 1257899999999999999999999999999999999999987765433333322232  25789999999999


Q ss_pred             cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848        332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS  411 (514)
Q Consensus       332 g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  411 (514)
                      ++.||++++++++++.+......+.++++.++..++++.++++.+.+.+.++.+++++++++++.+.|++.++++.++.+
T Consensus       239 ~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  318 (384)
T 1bs0_A          239 GVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCS  318 (384)
T ss_dssp             SSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCS
T ss_pred             hccCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            98889999999999888765433333446788889888999987643255678999999999999999998887765667


Q ss_pred             cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +++++.+++..+..++.+.|. ++||.+.++..+..+.+.+++|++++..++++++++++++|+++
T Consensus       319 ~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          319 AIQPLIVGDNSRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             SBCCEEEESHHHHHHHHHHHH-HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHH-HCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            777777765455778999996 78999998886554455689999999888999999999999864

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=1.9e-37  Score=317.55  Aligned_cols=352  Identities=30%  Similarity=0.475  Sum_probs=279.9

Q ss_pred             cCCceeeecccCCCC---CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccc
Q psy16848         15 KSNRVTCRLSSVQYK---VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDST   91 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~   91 (514)
                      .+|+.++||.++.++   .+|.+.+++.+++..+.....++....|..+..+++++++++++|.+++++++||++|+..+
T Consensus        40 ~~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~  119 (398)
T 3a2b_A           40 IDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGP  119 (398)
T ss_dssp             ETTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             ECCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence            467789999887764   46899999999998866544445556677889999999999999999889999999999999


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.++|.+...+++..|.+++.++..|.++|++.+.+.                            
T Consensus       120 ~~~~~~--~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~----------------------------  169 (398)
T 3a2b_A          120 LSCLMG--RNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRL----------------------------  169 (398)
T ss_dssp             HHHSSC--TTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTS----------------------------
T ss_pred             HHHHhC--CCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhh----------------------------
Confidence            988865  99999999999999998888888777777666666665555432                            


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (398)
T 3a2b_A          170 --------------------------------------------------------------------------------  169 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                          ..+++++|++++++||||.+.++++|.++|++||+++|+||+|+.+.++..+.++.+..+...++|++++|+||++
T Consensus       170 ----~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~  245 (398)
T 3a2b_A          170 ----PEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL  245 (398)
T ss_dssp             ----CSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred             ----ccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccc
Confidence                1114789999999999999999999999999999999999999977554433333332232224699999999999


Q ss_pred             cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848        332 GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS  411 (514)
Q Consensus       332 g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  411 (514)
                      ++.|||+++++++++.+......+.++...++..++++.++++...  +.++.+++++++++++.+.|++.|+++..+.+
T Consensus       246 ~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g  323 (398)
T 3a2b_A          246 ASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQ--NEPEHIEKLWKNTDYAKAQLLDHGFDLGATES  323 (398)
T ss_dssp             CSSCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--HCTHHHHHHHHHHHHHHHHHHHTTCCBCSCCS
T ss_pred             cCCCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence            9878999999999988876432222233556666666777887652  34568899999999999999998888777778


Q ss_pred             cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      .++++.+++..+..++.+.|+ ++||.+.++..|..+.+.+++|++++..++++++++++++|++++++++.
T Consensus       324 ~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~~  394 (398)
T 3a2b_A          324 PILPIFIRSNEKTFWVTKMLQ-DDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEV  394 (398)
T ss_dssp             SEEEEECCCHHHHHHHHHHHH-HTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC-
T ss_pred             CEEEEEcCCHHHHHHHHHHHH-HCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            888898876556778999996 77999999887654445679999999888999999999999999988754

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=1.3e-32  Score=282.10  Aligned_cols=348  Identities=12%  Similarity=0.066  Sum_probs=262.6

Q ss_pred             eeeecccCCCC---CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEecccccccc
Q psy16848         19 VTCRLSSVQYK---VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVANDS   90 (514)
Q Consensus        19 ~~~d~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~~   90 (514)
                      .++||++++|.   .+|++.+++.+++...+.  .++....|..++.+++++++++++|.     +.+++++||++|+..
T Consensus        40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~  117 (407)
T 3nra_A           40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGV--QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL  117 (407)
T ss_dssp             CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHH--HHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred             ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCC--CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence            38999987776   378999999999985321  11122336678999999999999886     567888888999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.++|.+...+++..|.+++.++.+..+         .                          
T Consensus       118 ~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~--------------------------  160 (407)
T 3nra_A          118 AVAATVA--RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVS---------A--------------------------  160 (407)
T ss_dssp             HHHTTCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCS---------S--------------------------
T ss_pred             HHHHhCC--CCCEEEEcCCcccchHHHHHHcCCEEEEeeccccc---------c--------------------------
Confidence            9988866  99999999999999999998888887766541000         0                          


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                           .....                                             ..|.+.+++
T Consensus       161 ---------------------~~~~~---------------------------------------------~~d~~~l~~  174 (407)
T 3nra_A          161 ---------------------DETRA---------------------------------------------GLDLTGLEE  174 (407)
T ss_dssp             ---------------------CCSSC---------------------------------------------CBCHHHHHH
T ss_pred             ---------------------cCcCC---------------------------------------------CcCHHHHHH
Confidence                                 00000                                             015566666


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++    +++++++++++||||.++|   +++|.++|++||+++|+||+|+.+..+. ....+........+.+++++|
T Consensus       175 ~l~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s  250 (407)
T 3nra_A          175 AFKA----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG  250 (407)
T ss_dssp             HHHT----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEEC
T ss_pred             HHhh----CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeC
Confidence            6654    4788999999999999999   9999999999999999999999554432 221222111012467899999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      +||.+|.+|   ||+++++++++.+......+  +.+.++..++++.++++.. ...+++.+++++++++++.+.|+++ 
T Consensus       251 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~  327 (407)
T 3nra_A          251 PSKTESLSGYRLGVAFGSRAIIARMEKLQAIV--SLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCE  327 (407)
T ss_dssp             SSSTTCCGGGCCEEEEECHHHHHHHHHHHHHH--TSSSCHHHHGGGGGTTCCC-TTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             cccccCCCeeeEEEEEcCHHHHHHHHHHHhhh--ccCCChHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999998656   99999999999888766554  4456777777766666521 3456778889999999999999988 


Q ss_pred             CCccccCCC-cEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTPS-HIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       403 g~~~~~~~~-~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++.+..+.+ .++++.++. ..+..++.+.|++++||.+.++..|. +.+.+++|++++  .+++++++++++|++++++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          328 GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS-PHTADSVRLNFS--QDHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             TCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC-TTCTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             CceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence            787766654 566677765 45678899999645799999988755 445789999998  3899999999999999887


Q ss_pred             c
Q psy16848        481 L  481 (514)
Q Consensus       481 ~  481 (514)
                      +
T Consensus       405 ~  405 (407)
T 3nra_A          405 Y  405 (407)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=4.2e-31  Score=271.86  Aligned_cols=344  Identities=17%  Similarity=0.217  Sum_probs=247.7

Q ss_pred             CceeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCc--chHHHHHHHHHHhHcCC---CcEEEEecccccccc
Q psy16848         17 NRVTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGN--SLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDS   90 (514)
Q Consensus        17 g~~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~   90 (514)
                      |+.+++|+.+.+. .+|.+.+++.+++..+....+.....++.  .+...++++.++++++.   +.+++++|||+|+..
T Consensus        26 g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~  105 (420)
T 1t3i_A           26 GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINL  105 (420)
T ss_dssp             TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred             CCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHH
Confidence            4557888665554 36899999999998754322211222332  46678999999999998   567888888999999


Q ss_pred             chhhc----cccCCCceEEecCccchhhh----hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         91 TLFTL----GKMIPGLHYISDAGNHASMI----QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        91 ~l~~l----~~~~~gd~v~~~~~~h~~~~----~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      ++.++    ..  +||.|+++.++|.+..    ..++..|.+++.++.++                              
T Consensus       106 ~~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------------------------  153 (420)
T 1t3i_A          106 VAYSWGMNNLK--AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE------------------------------  153 (420)
T ss_dssp             HHHHTHHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT------------------------------
T ss_pred             HHHHhhhcccC--CCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC------------------------------
Confidence            99888    55  9999999999998853    22233344433322200                              


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                       .+                                            .
T Consensus       154 ---------------------------------~~--------------------------------------------~  156 (420)
T 1t3i_A          154 ---------------------------------QE--------------------------------------------S  156 (420)
T ss_dssp             ---------------------------------TS--------------------------------------------S
T ss_pred             ---------------------------------CC--------------------------------------------C
Confidence                                             00                                            0


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      .|.+.+++.+    ++++++|++++++||+|.++|+++|.++|++||+++|+|++|++|...     + +..  ..++|+
T Consensus       157 ~d~~~l~~~l----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~di  224 (420)
T 1t3i_A          157 FDLEHFKTLL----SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP-----L-DVQ--LIDCDW  224 (420)
T ss_dssp             BCHHHHHHHC----CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-----C-CHH--HHTCSE
T ss_pred             cCHHHHHHhh----CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCcc-----C-chh--hcCCCE
Confidence            1344444444    346899999999999999999999999999999999999999965431     1 111  235899


Q ss_pred             EEcCCcccccCCC-eEEEecHHHHHHHHhhcCceE------------------eccCCcHHHHHH-HHHHHHHhhhchHH
Q psy16848        323 ISGTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGFI------------------FTTSLPPTVLAG-AREAIRILSSQEGV  382 (514)
Q Consensus       323 ~~~S~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~~------------------~~~~~~~~~~~a-~~~~l~~~~~~~~~  382 (514)
                      +++|+||.+|+.| |++++++++++.+......+.                  +..+.++..+.+ +.++++.+.+.+++
T Consensus       225 ~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  304 (420)
T 1t3i_A          225 LVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGME  304 (420)
T ss_dssp             EEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             EEEehhhhcCCCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHH
Confidence            9999999888767 999999999888765443210                  122344444444 44467776555677


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCccccCC------CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----CC-
Q psy16848        383 ELRAKHQDIVAYLRNELIQI-GFPVEHTP------SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----VG-  450 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----~~-  450 (514)
                      +++++++++++++.+.|++. ++++..+.      ++++.+.+++ .+..++.+.| .++||.+.++..|..+    .+ 
T Consensus       305 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~g~  382 (420)
T 1t3i_A          305 NIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG-LHASDVATMV-DQDGIAIRSGHHCTQPLHRLFDA  382 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-BCHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECC-CCHHHHHHHH-HHCCeEEeeccccchHHHHhcCC
Confidence            88999999999999999998 77776553      6788888764 4567888888 5999999987543211    12 


Q ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      .+++|++++..++++++++++++|++++++++.
T Consensus       383 ~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          383 SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            578999999888999999999999999988753

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=6.6e-31  Score=267.89  Aligned_cols=348  Identities=14%  Similarity=0.062  Sum_probs=253.1

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~   89 (514)
                      +|+.++||..++  +..+|++.+++.+++.+....++.     ...++.+++++.+++.+|    .+..+++++|++|+.
T Consensus        25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~   99 (391)
T 3dzz_A           25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYES-----VPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAIS   99 (391)
T ss_dssp             CCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBC-----CCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHH
T ss_pred             cCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCC-----CCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHH
Confidence            455678885433  335789999999988762222211     135777888888888876    345566666788999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.++|.+....++..|.+++.++....                    ++.|            
T Consensus       100 ~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~------------  145 (391)
T 3dzz_A          100 AMVRQFTS--PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYE--------------------NSKY------------  145 (391)
T ss_dssp             HHHHHHSC--TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEE--------------------TTEE------------
T ss_pred             HHHHHhCC--CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeec--------------------CCce------------
Confidence            99988866  9999999999999999888888887776554100                    0000            


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              ..|.+.++
T Consensus       146 ------------------------------------------------------------------------~~d~~~l~  153 (391)
T 3dzz_A          146 ------------------------------------------------------------------------SVNWADLE  153 (391)
T ss_dssp             ------------------------------------------------------------------------ECCHHHHH
T ss_pred             ------------------------------------------------------------------------eecHHHHH
Confidence                                                                                    01455555


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+++   +++++|++++++||+|.+++   +++|.++|++||+++|+||+|+.+.. +....++........+.+++++
T Consensus       154 ~~l~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~  230 (391)
T 3dzz_A          154 EKLAT---PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLI  230 (391)
T ss_dssp             HHHTS---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEE
T ss_pred             HHHhc---cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEE
Confidence            55542   35889999999999999976   89999999999999999999995443 3222222222111124559999


Q ss_pred             CCcccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        326 TLGKAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      |+||++|.+|   |+++++ +++++.+........ ..+.++..++++.++++.. .+++++.+++++++++++.+.|++
T Consensus       231 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~  308 (391)
T 3dzz_A          231 SPSKTFNLAALHAACAIIPNPDLRARAEESFFLAG-IGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAK  308 (391)
T ss_dssp             CSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHT-CSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eChhhccccchhheEEEECCHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998656   999987 888888876543221 1256777888888888763 455778899999999999999998


Q ss_pred             -C-CCccccCCCcE-EEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        402 -I-GFPVEHTPSHI-IPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       402 -~-g~~~~~~~~~~-~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                       . ++.+..+.+++ +++.++. ..+..++.+.|++++||.+.++..+.. .+.+++|++++  ++++++++++++|+++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRis~~--~~~~~i~~~l~~l~~~  385 (391)
T 3dzz_A          309 EVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG-NGHEFVRINLA--CPKELVIDGMQRLKQG  385 (391)
T ss_dssp             HCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCT-TGGGEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred             hCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence             4 88877776654 4577764 246788999996589999999886443 34689999998  6899999999999999


Q ss_pred             HHHcC
Q psy16848        478 WKSLD  482 (514)
Q Consensus       478 l~~~~  482 (514)
                      ++++.
T Consensus       386 l~~~~  390 (391)
T 3dzz_A          386 VLNLN  390 (391)
T ss_dssp             HHTCC
T ss_pred             HHHhh
Confidence            88753

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=6.3e-31  Score=266.39  Aligned_cols=333  Identities=16%  Similarity=0.102  Sum_probs=244.9

Q ss_pred             CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~   89 (514)
                      +|+.++||.++.+.  .+|.+.+++.++++.....   +....+..++.+++.+.+.+.+|    .+.+++++||++|+.
T Consensus        27 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~---y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  103 (370)
T 2z61_A           27 EGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTH---YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF  103 (370)
T ss_dssp             TTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCS---CCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred             cCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccC---CCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence            57788999765542  3688999999988752111   11122344455555555544433    245777788889999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.+.|.+....++..|.+++.++ .|.++|                                 
T Consensus       104 ~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-~d~~~l---------------------------------  147 (370)
T 2z61_A          104 FALSSIID--DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-FTVESL---------------------------------  147 (370)
T ss_dssp             HHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEEC-SSHHHH---------------------------------
T ss_pred             HHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeC-CCHHHH---------------------------------
Confidence            99988865  999999999999998877777776665554 333333                                 


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                                     +
T Consensus       148 -------------------------------------------------------------------------------~  148 (370)
T 2z61_A          148 -------------------------------------------------------------------------------E  148 (370)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           3


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      +.++    ++++++++++++||+|.++|.+ |.++|++||+++|+||+|+.+..+....++....+ ..+.|++++|+||
T Consensus       149 ~~l~----~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK  222 (370)
T 2z61_A          149 EALS----DKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDE-NLEKTILINGFSK  222 (370)
T ss_dssp             HHCC----SSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCT-TCSSEEEEEESTT
T ss_pred             Hhcc----cCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccC-CCCcEEEEecChh
Confidence            3332    2478899999999999999999 99999999999999999996544322222222211 2367999999999


Q ss_pred             cccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848        330 AFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV  406 (514)
Q Consensus       330 ~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  406 (514)
                      ++|.+|   |++++++++++.+......+  +.+.++..+.++.++++.+...++++.+++++++++++.+.|++.|+++
T Consensus       223 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  300 (370)
T 2z61_A          223 LYAMTGWRIGYVISNDEIIEAILKLQQNL--FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEV  300 (370)
T ss_dssp             TTTCGGGCCEEEECCHHHHHHHHHHHHHH--TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred             ccCCccceEEEEEECHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence            998656   99999999998887665443  3467888888888888652245667888999999999999999888877


Q ss_pred             ccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        407 EHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       407 ~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      ..+.++ ++++.++.  +..++.+.|++++||.+.++..+.. .+.+++|++++  ++++++++++++|+++++
T Consensus       301 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          301 NNPIGAYYVFPNIGE--DGREFAYKLLKEKFVALTPGIGFGS-KGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             CCCCBTTEECCBCSS--CHHHHHHHHHHHHCEECEEGGGGCG-GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             cCCCcceEEEEecCC--CHHHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            666554 45567664  5678889986478999999876542 24679999999  689999999999998764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-30  Score=268.70  Aligned_cols=349  Identities=15%  Similarity=0.109  Sum_probs=249.3

Q ss_pred             cCCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a   87 (514)
                      .+|+.++||.++..  ..+|.+.+++.++++....  .++....|..++.+++.+.+.+.+|.     +.+++++||++|
T Consensus        34 ~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a  111 (412)
T 2x5d_A           34 RRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDT--HGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEG  111 (412)
T ss_dssp             HTTCCCEECSSCCCCSCCCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHH
T ss_pred             hcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCC--CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHH
Confidence            46788999976543  2478999999888765311  11111223344444444444444463     367777888899


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.++..  +||.|+++.+.|.+....++..|.+++.++.++                                   
T Consensus       112 ~~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-----------------------------------  154 (412)
T 2x5d_A          112 LAHLMLATLD--HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVP-----------------------------------  154 (412)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHHTCEEEEEECST-----------------------------------
T ss_pred             HHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCC-----------------------------------
Confidence            9999988865  999999999999998877766666655443311                                   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                .+++..
T Consensus       155 --------------------------------------------------------------------------~~~~~~  160 (412)
T 2x5d_A          155 --------------------------------------------------------------------------GIDFFN  160 (412)
T ss_dssp             --------------------------------------------------------------------------TSCHHH
T ss_pred             --------------------------------------------------------------------------ccCCCC
Confidence                                                                                      002222


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~  323 (514)
                      +.+.+++...++++++++++++||||.++|   +++|.++|++||+++|+||+|+.+.. |....++..... ..+.+++
T Consensus       161 d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~i~  239 (412)
T 2x5d_A          161 ELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG-AKDIAVE  239 (412)
T ss_dssp             HHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-GGGTEEE
T ss_pred             CHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccC-ccCcEEE
Confidence            233444433356889999999999999998   68999999999999999999995543 333333333221 1367899


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++|+||++|.+|   ||+++++++++.+.......  +.+.+++.+.++.++|+.. ..++++++++++++++++.+.|+
T Consensus       240 ~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~  316 (412)
T 2x5d_A          240 FFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYH--DYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLR  316 (412)
T ss_dssp             EEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCccccCCcccceEEEEcCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998657   99999999998887655433  3367888888888888743 34677889999999999999999


Q ss_pred             hCCCccccCCCc-EEEEEeCCCc---cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHTPSH-IIPIKIGNPA---LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       401 ~~g~~~~~~~~~-~~~i~l~~~~---~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.++.+..+.++ ++++.++...   +..++++.|++++||.+.++..|. ..+.+++|++++.  +++++++++++|++
T Consensus       317 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~~~l~~~l~~l~~  393 (412)
T 2x5d_A          317 EAGWMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFG-DYGDDHVRFALIE--NRDRLRQAVRGIKA  393 (412)
T ss_dssp             HHTCCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred             HCCCEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            888877666654 6778886543   577899998645799999988653 2346799999994  89999999999999


Q ss_pred             HHHHcCC
Q psy16848        477 VWKSLDL  483 (514)
Q Consensus       477 ~l~~~~~  483 (514)
                      ++++...
T Consensus       394 ~l~~~~~  400 (412)
T 2x5d_A          394 MFRADGL  400 (412)
T ss_dssp             HHHHTTC
T ss_pred             HHHhcCC
Confidence            9988653

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=6.2e-31  Score=269.23  Aligned_cols=338  Identities=17%  Similarity=0.185  Sum_probs=244.6

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc--ccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccccchhh
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN--ISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~l~~   94 (514)
                      ++|.++.. ..+|++.+++.++++....+...+..  .+...+...+++++++++++.   +..++++|||+|+..++.+
T Consensus        26 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~  104 (406)
T 1kmj_A           26 YLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANS  104 (406)
T ss_dssp             ECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred             EecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHH
Confidence            34444444 34789999999999875432222111  122356788999999999987   4566677788999999988


Q ss_pred             c----cccCCCceEEecCccchhhhhh----hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         95 L----GKMIPGLHYISDAGNHASMIQG----IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        95 l----~~~~~gd~v~~~~~~h~~~~~~----~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +    ..  +||.|+++.++|.++...    ++..|.+++.++.++                                  
T Consensus       105 ~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------------------  148 (406)
T 1kmj_A          105 WGNSNVR--AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP----------------------------------  148 (406)
T ss_dssp             THHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT----------------------------------
T ss_pred             hhhhcCC--CCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC----------------------------------
Confidence            8    55  999999999999887533    233344433322210                                  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                   .+                                            ..|.+
T Consensus       149 -----------------------------~~--------------------------------------------~~d~~  155 (406)
T 1kmj_A          149 -----------------------------DG--------------------------------------------TLQLE  155 (406)
T ss_dssp             -----------------------------TS--------------------------------------------CBCGG
T ss_pred             -----------------------------CC--------------------------------------------CcCHH
Confidence                                         00                                            01456


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++.+.    +++++|++++++||+|.++|+++|.++|++||+++|+|++|+.|..     ++ +..  ..++|++++|
T Consensus       156 ~l~~~l~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-----~~-~~~--~~~~d~~~~s  223 (406)
T 1kmj_A          156 TLPTLFD----EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-----PV-DVQ--ALDCDFYVFS  223 (406)
T ss_dssp             GHHHHCC----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CC-CHH--HHTCSEEEEE
T ss_pred             HHHHHhc----cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC-----CC-ccc--ccCCCEEEEE
Confidence            6666553    4689999999999999999999999999999999999999996542     11 111  2368999999


Q ss_pred             CcccccCCC-eEEEecHHHHHHHHhhcCce-------------------EeccCCcHHHHH-HHHHHHHHhhhchHHHHH
Q psy16848        327 LGKAFGNIG-GYIVGTKNFIDTIRSYAAGF-------------------IFTTSLPPTVLA-GAREAIRILSSQEGVELR  385 (514)
Q Consensus       327 ~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~  385 (514)
                      +||.+|+.| |++++++++++.+.....+.                   .+..+.+...+. ++.++++.+.+.++++++
T Consensus       224 ~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  303 (406)
T 1kmj_A          224 GHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIA  303 (406)
T ss_dssp             GGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             chhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence            999998888 99999999988876543211                   011223444444 444777776555677899


Q ss_pred             HHHHHHHHHHHHHHHhC-CCccccC--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEE
Q psy16848        386 AKHQDIVAYLRNELIQI-GFPVEHT--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLA  457 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~  457 (514)
                      ++++++++++.+.|+++ ++.+..+  .++++.+.++. .+..++.+.| .++||.+.++..|..+     ..++++|++
T Consensus       304 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~iRis  381 (406)
T 1kmj_A          304 EYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGK-HHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRAS  381 (406)
T ss_dssp             HHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETT-CCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECC-CCHHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCeEEEE
Confidence            99999999999999988 7877766  67788887763 3567888888 5899999988753311     125799999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++..+|++|+++++++|+++++.+
T Consensus       382 ~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          382 LAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCHHHHHHHHHHHHHHHHhh
Confidence            998889999999999999988764

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.98  E-value=8e-31  Score=270.50  Aligned_cols=344  Identities=13%  Similarity=0.129  Sum_probs=251.0

Q ss_pred             CceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEecccccccc
Q psy16848         17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDS   90 (514)
Q Consensus        17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~   90 (514)
                      |+.++|+...+  +..+|++.+++.+++++....++     ....++.+++++++++.++    .+..+++++|++|+..
T Consensus        60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~  134 (421)
T 3l8a_A           60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYN-----YFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISI  134 (421)
T ss_dssp             CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCB-----CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHH
T ss_pred             CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCC-----CCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHH
Confidence            56677774332  33479999999999986222211     1235778888888888876    2346666777789999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++.+  +||.|++..+.|.+...+++..|.+++.++...                    -++.|             
T Consensus       135 a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~-------------  179 (421)
T 3l8a_A          135 ALQAFSE--KGDAVLINSPVYYPFARTIRLNDHRLVENSLQI--------------------INGRF-------------  179 (421)
T ss_dssp             HHHHHSC--TEEEEEEEESCCHHHHHHHHHTTEEEEEEECEE--------------------ETTEE-------------
T ss_pred             HHHHhcC--CCCEEEECCCCcHHHHHHHHHCCCEEEeccccc--------------------cCCCe-------------
Confidence            9998866  999999999999999888877777665443210                    00000             


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                             ..|++.+++
T Consensus       180 -----------------------------------------------------------------------~~d~~~le~  188 (421)
T 3l8a_A          180 -----------------------------------------------------------------------EIDFEQLEK  188 (421)
T ss_dssp             -----------------------------------------------------------------------ECCHHHHHH
T ss_pred             -----------------------------------------------------------------------eeCHHHHHH
Confidence                                                                                   015666666


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccc-cccCCCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAV-GLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~-g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+.+   +++++|++++++||+|.+++   +++|+++|++||+++|+||+|+. ++.|....++........+.++++.|
T Consensus       189 ~i~~---~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s  265 (421)
T 3l8a_A          189 DIID---NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSS  265 (421)
T ss_dssp             HHHH---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEEC
T ss_pred             Hhhc---cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEe
Confidence            6653   35889999999999999976   89999999999999999999993 33343332332222111356788889


Q ss_pred             CcccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        327 LGKAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +||++|..|   |+++++ +++.+.+......+. ..+.+++.++++.++++.. .+++++.+++++++++++.+.|++.
T Consensus       266 ~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~-~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~  343 (421)
T 3l8a_A          266 ATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANN-QHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEAK  343 (421)
T ss_dssp             SHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhccCchhheEeEEcCCHHHHHHHHHHHHhcc-cCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999998656   999887 888888876543321 2267888999999988853 4567888999999999999999986


Q ss_pred             -CCccccCCCcEEE-EEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        403 -GFPVEHTPSHIIP-IKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       403 -g~~~~~~~~~~~~-i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                       ++.+..+.+.++. +.++. ..+..++.+.|++++||.+.++..|. ..+.+++|++++  ++++++++++++|+++++
T Consensus       344 ~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          344 TKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFG-KEGKYFARLNVA--TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             CSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred             CCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence             7877777766544 77764 24567888999756799999988643 345789999998  689999999999998764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.98  E-value=2.2e-30  Score=260.55  Aligned_cols=330  Identities=13%  Similarity=0.057  Sum_probs=251.7

Q ss_pred             cCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccccc
Q psy16848         15 KSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDS   90 (514)
Q Consensus        15 ~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~   90 (514)
                      .+|+.++||.++.  +..+|++.+++.+++... ..       + ......+++++++++++.  +..++++||++|+..
T Consensus        13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~-------y-~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~   83 (354)
T 3ly1_A           13 PSTDNPIRINFNENPLGMSPKAQAAARDAVVKA-NR-------Y-AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRA   83 (354)
T ss_dssp             CCSSSCEECSSCCCSSCCCHHHHHHHHHTGGGT-TS-------C-CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHH
T ss_pred             CCCCceEEccCCCCCCCCCHHHHHHHHHHHhhC-cC-------C-CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHH
Confidence            4677899997543  335789999998887641 11       1 134568999999999984  456777788899999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++.+  +||.|+++.+.|.+....++..|.+++.++.+..                                     
T Consensus        84 ~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------------------------------------  124 (354)
T 3ly1_A           84 AIEAYAS--LEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN-------------------------------------  124 (354)
T ss_dssp             HHHHHCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT-------------------------------------
T ss_pred             HHHHHhC--CCCeEEECCCCchHHHHHHHHcCCEEEEecCCCC-------------------------------------
Confidence            9988866  9999999999999998888888877776654300                                     


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                               .                                             .-|.+.+++
T Consensus       125 -------------------------~---------------------------------------------~~d~~~l~~  134 (354)
T 3ly1_A          125 -------------------------W---------------------------------------------AFDIEGLKA  134 (354)
T ss_dssp             -------------------------S---------------------------------------------CCCHHHHHH
T ss_pred             -------------------------C---------------------------------------------CCCHHHHHH
Confidence                                     0                                             014455555


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      .+++.  ++++++++++++||+|.++|.+++.++++.  +|+++|+||+|+.+..+....+.........+.+++++|+|
T Consensus       135 ~l~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  212 (354)
T 3ly1_A          135 AVAAY--SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFS  212 (354)
T ss_dssp             HHHTC--SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESS
T ss_pred             HhccC--CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeCh
Confidence            55431  357899999999999999998888887777  99999999999954433222122111111116789999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |++|.+|   |++++++++++.+......+    +.++..++++.++++..  .++++.+++++++++++.+.|++.++.
T Consensus       213 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~  286 (354)
T 3ly1_A          213 KIHAMAGMRVGYAVAHPTVIALMGRYVAGE----KINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLP  286 (354)
T ss_dssp             STTCCGGGCCEEEECCHHHHHHHGGGTTCS----CCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhccChhhhheeeecCHHHHHHHHHhcCCC----CCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            9998656   99999999999998766553    67888888888888732  567788999999999999999988888


Q ss_pred             cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +.++.+.++++.++.  +..++.+.|. ++||.+. +.++.   ..+++|++++   +++|+++++++|++++++
T Consensus       287 ~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~v~-g~~~~---~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          287 YLPSEGNFVFHQLVV--PLKDYQTHMA-DAGVLIG-RAFPP---ADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             BCCCCSSEEEEECSS--CHHHHHHHHH-HTTEECC-CCCTT---CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             ECCCCceEEEEECCC--CHHHHHHHHH-HCCEEEe-ecCCC---CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            777778888888875  4788999996 8999998 65532   4679999987   899999999999998875

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.98  E-value=2.5e-30  Score=264.04  Aligned_cols=342  Identities=14%  Similarity=0.097  Sum_probs=248.8

Q ss_pred             hcCCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccc
Q psy16848         14 HKSNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVA   87 (514)
Q Consensus        14 ~~~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a   87 (514)
                      ..+|+.++||.++..  ..+|++.+++.+++.....   ++....|..++.+++++.+.+.+|    .+.+++++||++|
T Consensus        27 ~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~a  103 (391)
T 3h14_A           27 EEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDAL---GYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGG  103 (391)
T ss_dssp             HHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred             HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCC---CCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHH
Confidence            347888999976543  2378899999988865211   111222344555556655555544    3456777888899


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.++..  +||.|+++.+.|.+....++..|.+++.++.+..                                  
T Consensus       104 l~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~----------------------------------  147 (391)
T 3h14_A          104 FLLAFTALFD--SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPE----------------------------------  147 (391)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGG----------------------------------
T ss_pred             HHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcc----------------------------------
Confidence            9999988866  9999999999999998888777777665544210                                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                 .++..
T Consensus       148 ---------------------------------------------------------------------------~~~~~  152 (391)
T 3h14_A          148 ---------------------------------------------------------------------------NRLQP  152 (391)
T ss_dssp             ---------------------------------------------------------------------------GTTSC
T ss_pred             ---------------------------------------------------------------------------cCCCC
Confidence                                                                                       01111


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      +.+.+++.   +++++++++++||||.++|   +++|.++|++||+++|+||+|+.+..+....+....    .+.++++
T Consensus       153 d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~----~~~~i~~  225 (391)
T 3h14_A          153 VPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL----TDECYVI  225 (391)
T ss_dssp             CHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT----CSSSEEE
T ss_pred             CHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc----CCCEEEE
Confidence            12233332   5789999999999999999   899999999999999999999954443322222221    3567999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +|+||.+|.+|   ||+++++++++.+......+  +.+.+++.+.++.++++  ..+.+++.+++++++++++.+.|++
T Consensus       226 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~  301 (391)
T 3h14_A          226 NSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQNM--FICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPK  301 (391)
T ss_dssp             EESSSTTCCTTSCCEEEECCGGGHHHHHHHHHHT--TCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhccCCccceeEEEEeCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998657   99999999998887765544  44678888888888887  4566788899999999999999998


Q ss_pred             CCCcc-ccCCC-cEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        402 IGFPV-EHTPS-HIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       402 ~g~~~-~~~~~-~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      .++.. ..+.+ .++++.++. ..+..++.+.|++++||.+.++..|..+.+.+++|++++.  +++++++++++|++++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~  379 (391)
T 3h14_A          302 AGFTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFM  379 (391)
T ss_dssp             HTCCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred             cCCCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence            86554 34444 466677765 4567889999874569999999876654557899999984  8899999999999999


Q ss_pred             HHcC
Q psy16848        479 KSLD  482 (514)
Q Consensus       479 ~~~~  482 (514)
                      ++..
T Consensus       380 ~~~~  383 (391)
T 3h14_A          380 QARG  383 (391)
T ss_dssp             HHC-
T ss_pred             HHhc
Confidence            8764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.98  E-value=4.1e-30  Score=262.10  Aligned_cols=345  Identities=18%  Similarity=0.185  Sum_probs=250.6

Q ss_pred             ceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCc-EEEEecccccccc
Q psy16848         18 RVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEA-GLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~-~i~~~sGt~a~~~   90 (514)
                      ..++||..+..  ..+|++.+++.++++....   .+....|..++.+++.+.+.+.+|    .+. .++++||++|+..
T Consensus        26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~  102 (389)
T 1gd9_A           26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLT---HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM  102 (389)
T ss_dssp             SSCEECCCCSCSSCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred             cCeEecCCCCCCCCCCHHHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence            46789865443  3478999999999876221   111222445555555555555546    346 7777888999999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|.+...+++..|.+++.++....+                                    
T Consensus       103 ~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~------------------------------------  144 (389)
T 1gd9_A          103 GLSAFLK--DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEED------------------------------------  144 (389)
T ss_dssp             HHTTTCC--TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGG------------------------------------
T ss_pred             HHHHhCC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCcc------------------------------------
Confidence            9988865  99999999999999887777777766554431000                                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                              +.                                             .-|.+.+++
T Consensus       145 ------------------------~~---------------------------------------------~~d~~~l~~  155 (389)
T 1gd9_A          145 ------------------------EF---------------------------------------------RLNVDELKK  155 (389)
T ss_dssp             ------------------------TT---------------------------------------------CCCHHHHHH
T ss_pred             ------------------------CC---------------------------------------------CCCHHHHHH
Confidence                                    00                                             013444544


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .++    ++++++++++++||||.++|   +++|.++|++||+++|+||+|+.+..+ ....++....+ ..+.|++++|
T Consensus       156 ~l~----~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s  230 (389)
T 1gd9_A          156 YVT----DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG-MFERTITVNG  230 (389)
T ss_dssp             HCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT-CGGGEEEEEE
T ss_pred             hcC----cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC-CCCCEEEEec
Confidence            443    35789999999999999997   899999999999999999999965543 21223333222 1467999999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS-QEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +||++|.+|   |++++++++++.+.......  +.+.++..+.++.++++.... .++++++++++++++++.+.|++.
T Consensus       231 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (389)
T 1gd9_A          231 FSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN--ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  308 (389)
T ss_dssp             STTTTTCGGGCCEEEECCHHHHHHHHHHHTTT--TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChhhcCCcccceEEEEECHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999998657   99999999999887765544  346678888888888874321 156788899999999999999998


Q ss_pred             CCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       403 g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      |+++..+.++ ++++.++. +.+..++.+.|++++||.+.++..+. ..+.+++|++++.  +++++++++++|++++++
T Consensus       309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          309 GLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG-KAGEGYVRISYAT--AYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             TCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC-GGGTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             CCeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            8877666655 45666653 34577899998558999999988644 2346799999984  899999999999999887


Q ss_pred             cC
Q psy16848        481 LD  482 (514)
Q Consensus       481 ~~  482 (514)
                      .+
T Consensus       386 ~~  387 (389)
T 1gd9_A          386 RK  387 (389)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.98  E-value=1.1e-30  Score=265.01  Aligned_cols=339  Identities=12%  Similarity=0.107  Sum_probs=247.9

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~   89 (514)
                      +|+.++||.+++  +..+|++.+++.+++.+....+   .. .+ .++.+++.+.+.+.+|    .+..++++||++|+.
T Consensus        21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y---~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~   95 (377)
T 3fdb_A           21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGY---QP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLY   95 (377)
T ss_dssp             SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSS---CC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCC---CC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHH
Confidence            566788886543  2347899999999998622221   11 23 4566666666665543    346777788889999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++.+  +||.|+++.+.|.+....++..|.+++.++.++                                     
T Consensus        96 ~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------------------------------  136 (377)
T 3fdb_A           96 IAIDHFTP--AQSKVIVPTPAYPPFFHLLSATQREGIFIDATG-------------------------------------  136 (377)
T ss_dssp             HHHHHHSC--TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT-------------------------------------
T ss_pred             HHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC-------------------------------------
Confidence            99988866  999999999999998888777777776655430                                     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              ..|.+.++
T Consensus       137 ------------------------------------------------------------------------~~d~~~l~  144 (377)
T 3fdb_A          137 ------------------------------------------------------------------------GINLHDVE  144 (377)
T ss_dssp             ------------------------------------------------------------------------SCCHHHHH
T ss_pred             ------------------------------------------------------------------------CCCHHHHH
Confidence                                                                                    01455555


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCC-ccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ-LHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~-~~~~di~~~  325 (514)
                      +.+++    +++++++++++||||.++|   +++|.++|++||+++|+||+|+.+..+.. ....+.... ..+.+++++
T Consensus       145 ~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~  219 (377)
T 3fdb_A          145 KGFQA----GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQ-HTVAAGVSDTAASVCITIT  219 (377)
T ss_dssp             HHHHT----TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSCHHHHHHEEEEE
T ss_pred             HHhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCC-CCcccHHHccCCCcEEEEE
Confidence            55543    3679999999999999998   68888889999999999999995433210 011122221 135678999


Q ss_pred             CCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        326 TLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      |+||.+|.+|   ||++. ++++++.+.......  +.+.+++.++++.++++.. .+++++.+++++++++++.+.|++
T Consensus       220 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~  296 (377)
T 3fdb_A          220 APSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVI--KDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPK  296 (377)
T ss_dssp             CSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHH--HCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eChHhccCcchhheEEEeCCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998656   87765 788888887654433  3477888998888888854 456778899999999999999998


Q ss_pred             C--CCccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        402 I--GFPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       402 ~--g~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      .  ++.+..+.++++ ++.++......++.+.+++++||.+.++..|... +.+++|++++  .+++++++++++|++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-~~~~~Ris~~--~~~e~i~~~l~~l~~~l  373 (377)
T 3fdb_A          297 RIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED-GTGFCRLNFA--TSREVLEEAIDRMAKAV  373 (377)
T ss_dssp             HSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG-GTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             hCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC-CCCEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence            4  888777766644 6887763223577888875569999998865432 4689999998  48999999999999988


Q ss_pred             HHc
Q psy16848        479 KSL  481 (514)
Q Consensus       479 ~~~  481 (514)
                      ++.
T Consensus       374 ~~~  376 (377)
T 3fdb_A          374 SHH  376 (377)
T ss_dssp             TTC
T ss_pred             hhc
Confidence            653

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=1.9e-30  Score=263.46  Aligned_cols=336  Identities=14%  Similarity=0.079  Sum_probs=245.5

Q ss_pred             cCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CCC-----cEEEEec
Q psy16848         15 KSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QKE-----AGLVFTS   83 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-----~~i~~~s   83 (514)
                      .+|+.++||.++.+.  .+|.+.+++.+++++..      ...++......++++.+++++    |.+     ..+++++
T Consensus        22 ~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g   95 (376)
T 2dou_A           22 ERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPT------TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG   95 (376)
T ss_dssp             HTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGG------GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred             ccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence            467789999766543  37889999888876410      111222234566777777765    753     4566666


Q ss_pred             cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         84 CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        84 Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      |++++..++.++..  +||.|+++.+.|.+....++..|.+++.++..+                       .|      
T Consensus        96 ~~~a~~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-----------------------~~------  144 (376)
T 2dou_A           96 SQEGLAHLLLALTE--PEDLLLLPEVAYPSYFGAARVASLRTFLIPLRE-----------------------DG------  144 (376)
T ss_dssp             HHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHTTCEEEEECBCT-----------------------TS------
T ss_pred             cHHHHHHHHHHhcC--CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCC-----------------------CC------
Confidence            67888888888865  999999999999999888877777766543200                       00      


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                                                                    ..
T Consensus       145 ------------------------------------------------------------------------------~~  146 (376)
T 2dou_A          145 ------------------------------------------------------------------------------LA  146 (376)
T ss_dssp             ------------------------------------------------------------------------------SB
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          01


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      |.+.+++.+.    ++++++++++++||||.++|   +++|.++|++||+++|+||+|+.+..+....++....+ ..+.
T Consensus       147 d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~  221 (376)
T 2dou_A          147 DLKAVPEGVW----REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG-AKER  221 (376)
T ss_dssp             CGGGSCHHHH----HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTT-GGGT
T ss_pred             CHHHHHHhhc----cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC-CCCc
Confidence            4445555553    24789999999999999998   78999999999999999999995544322222222222 2357


Q ss_pred             eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      +++++|+||++|.+|   ||+++++++++.+......+  +.+.++..++++.++++.. ..++++.+++++++++++.+
T Consensus       222 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~  298 (376)
T 2dou_A          222 VVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVI--DFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAE  298 (376)
T ss_dssp             EEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHH--CCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            899999999998656   99999999999887665444  3356788888888888643 45677888899999999999


Q ss_pred             HHHhCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        398 ELIQIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       398 ~L~~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .|++. +.+..+.++ ++++.+++..+..++.+.|+ ++||.+.++..+.. .+.+++|++++.  +++++++++++|++
T Consensus       299 ~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~f~~-~~~~~~Ris~~~--~~~~i~~~l~~l~~  373 (376)
T 2dou_A          299 ALKGV-LSLLPPRATMYLWGRLPEGVDDLEFGLRLV-ERGVALAPGRGFGP-GGKGFVRIALVR--PLEELLEAAKRIRE  373 (376)
T ss_dssp             HHTTT-SEECCCCBSSEEEEECCTTCCHHHHHHHHH-HTTEECEEGGGGCG-GGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred             HHHHh-cCccCCCeeEEEEEECCCCCCHHHHHHHHH-HCCEEEcCchhhCC-CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            99987 666655544 67788876556778999996 77999999876542 246799999984  89999999999987


Q ss_pred             HH
Q psy16848        477 VW  478 (514)
Q Consensus       477 ~l  478 (514)
                      ++
T Consensus       374 ~l  375 (376)
T 2dou_A          374 AL  375 (376)
T ss_dssp             TC
T ss_pred             Hh
Confidence            54

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.97  E-value=3.9e-30  Score=267.38  Aligned_cols=348  Identities=17%  Similarity=0.078  Sum_probs=247.6

Q ss_pred             CceeeecccCCC----CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccc
Q psy16848         17 NRVTCRLSSVQY----KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVAND   89 (514)
Q Consensus        17 g~~~~d~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~   89 (514)
                      +..+|||+++..    +.++++.+++.++++..+.....+....|..++.+++.+.+.+.+|.   +.++++++|++|+.
T Consensus        75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~  154 (448)
T 3aow_A           75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALD  154 (448)
T ss_dssp             TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHH
T ss_pred             CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHH
Confidence            345799966443    24678999999988762210011111223444444454444444475   34565666678888


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.++|.+....++..|.+++.++.++ +                                   
T Consensus       155 ~~~~~l~~--~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~-----------------------------------  196 (448)
T 3aow_A          155 LIGRVFLN--PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-E-----------------------------------  196 (448)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T-----------------------------------
T ss_pred             HHHHHHcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-C-----------------------------------
Confidence            88888865  999999999999999988888887776554310 0                                   


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              ..|.+.++
T Consensus       197 ------------------------------------------------------------------------g~d~~~L~  204 (448)
T 3aow_A          197 ------------------------------------------------------------------------GMKVEILE  204 (448)
T ss_dssp             ------------------------------------------------------------------------EECHHHHH
T ss_pred             ------------------------------------------------------------------------CCCHHHHH
Confidence                                                                                    01455555


Q ss_pred             HHHhhc--cCCCceEE-EEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceE
Q psy16848        250 QVLENM--DVKIPKLV-AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       250 ~~l~~~--~~~~~~~v-v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di  322 (514)
                      +.++..  ..+++++| ++++++||||.+++   +++|.++|++||+++|+||+|+.+.+ +....++....  ..+.++
T Consensus       205 ~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~--~~~~vi  282 (448)
T 3aow_A          205 EKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD--NEGRVI  282 (448)
T ss_dssp             HHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC--TTSCEE
T ss_pred             HHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC--CCCCEE
Confidence            555411  11257886 57899999999998   68999999999999999999996544 22222222222  235789


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      +++||||+++ +|   ||+++++++++.+.......  +.+.+++.+.++.++|+.. ...+++++++.++++++++.+.
T Consensus       283 ~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~  359 (448)
T 3aow_A          283 YLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQST--DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEA  359 (448)
T ss_dssp             EEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 57   99999999999887655443  3356888888888888742 1345677888899999999999


Q ss_pred             HHhC---CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848        399 LIQI---GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKFVTD  473 (514)
Q Consensus       399 L~~~---g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~~~~  473 (514)
                      |++.   ++.+..+. +.++++.++...+..++.+.|+ ++||.+.++..+... .+.+++|++++. .+++++++++++
T Consensus       360 L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~-~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~  437 (448)
T 3aow_A          360 LEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKR  437 (448)
T ss_dssp             HHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHH
T ss_pred             HHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHH-HCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHH
Confidence            9874   67765554 5577888876556788999996 779999998865432 346799999985 489999999999


Q ss_pred             HHHHHHHc
Q psy16848        474 LLAVWKSL  481 (514)
Q Consensus       474 l~~~l~~~  481 (514)
                      |++++++.
T Consensus       438 L~~~l~~~  445 (448)
T 3aow_A          438 LAETIKEE  445 (448)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.97  E-value=4.7e-30  Score=261.64  Aligned_cols=345  Identities=16%  Similarity=0.187  Sum_probs=248.4

Q ss_pred             cCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~   88 (514)
                      .+|+.++||.++...  .+|.+.+++.++++...   ..+....|..++.+++.+++.+.+|.    +..++++||++|+
T Consensus        27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~  103 (388)
T 1j32_A           27 AEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGK---TRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             hcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence            467789999765542  47889999999887521   11222234556666666666665553    3466667778999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++..  +||.|+++.+.|.+....++..|.+++.++.+..+                                  
T Consensus       104 ~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~----------------------------------  147 (388)
T 1j32_A          104 FNLMLAMIE--PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVET----------------------------------  147 (388)
T ss_dssp             HHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGG----------------------------------
T ss_pred             HHHHHHhcC--CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCccc----------------------------------
Confidence            999988865  99999999999999888777777766655431000                                  


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                +.                                             ..|.+.+
T Consensus       148 --------------------------~~---------------------------------------------~~d~~~l  156 (388)
T 1j32_A          148 --------------------------QF---------------------------------------------KVSPEQI  156 (388)
T ss_dssp             --------------------------TT---------------------------------------------CCCHHHH
T ss_pred             --------------------------CC---------------------------------------------CCCHHHH
Confidence                                      00                                             0134444


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+    +++++++++++++||||.++|   +++|.++|++||+++|+||+|+.+..+. ...++........+.|+++
T Consensus       157 ~~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (388)
T 1j32_A          157 RQAI----TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVC  232 (388)
T ss_dssp             HHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEE
T ss_pred             HHhc----CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEE
Confidence            4444    346889999999999999987   8999999999999999999999544322 1112221111013578999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +|+||++|.+|   |++++++++++.+.......  +.+.++..+.++.++++.. .+++++.+++++++++++.+.|++
T Consensus       233 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~  309 (388)
T 1j32_A          233 SGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS--TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNA  309 (388)
T ss_dssp             EESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eechhccCCcccceEEEEeCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998667   99999999988887654443  3366788888888888743 345778899999999999999999


Q ss_pred             C-CCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        402 I-GFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       402 ~-g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      . ++.+..+.++ ++++.++. +.+..++.+.|++++||.+.++..+..   ++++|++++  ++++++++++++|++++
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~i~~~~~~l~~~l  384 (388)
T 1j32_A          310 MPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA---DDCIRLSYA--TDLDTIKRGMERLEKFL  384 (388)
T ss_dssp             CTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC---TTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC---CCcEEEEec--CCHHHHHHHHHHHHHHH
Confidence            8 8877666655 44455543 235778999996447999999875432   468999997  68999999999999988


Q ss_pred             HHc
Q psy16848        479 KSL  481 (514)
Q Consensus       479 ~~~  481 (514)
                      +++
T Consensus       385 ~~~  387 (388)
T 1j32_A          385 HGI  387 (388)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=4e-30  Score=259.90  Aligned_cols=323  Identities=14%  Similarity=0.092  Sum_probs=246.4

Q ss_pred             ceeeecccCC-CC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccchh
Q psy16848         18 RVTCRLSSVQ-YK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDSTLF   93 (514)
Q Consensus        18 ~~~~d~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~l~   93 (514)
                      +.++||+++. .+ .+|++.+++.+++... ..+       +... ..++++++++++|.  +.+++++||++++..++.
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y-------~~~~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~  100 (365)
T 3get_A           30 KEVIKLASNENPFGTPPKAIECLRQNANKA-HLY-------PDDS-MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH  100 (365)
T ss_dssp             SCCEECSSCCCTTCSCHHHHHHHHHHGGGT-TSC-------CCTT-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHhh-ccC-------CCCC-hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            5689997543 33 4789999999988641 111       1111 15889999999984  456777788889999988


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      ++..  +||.|+++.++|.+....++..|.+++.++..                                          
T Consensus       101 ~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~------------------------------------------  136 (365)
T 3get_A          101 SKLN--SKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI------------------------------------------  136 (365)
T ss_dssp             HHCC--TTCEEEECSSCCTHHHHHHHHHTCEEEECSSS------------------------------------------
T ss_pred             HHhC--CCCEEEEeCCChHHHHHHHHHcCCEEEEEecC------------------------------------------
Confidence            8866  99999999999998887777666666554420                                          


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                          ..++ .+.+.++
T Consensus       137 --------------------------------------------------------------------~~~~-~d~~~l~  147 (365)
T 3get_A          137 --------------------------------------------------------------------THNL-DEFKKLY  147 (365)
T ss_dssp             --------------------------------------------------------------------SCCH-HHHHHHH
T ss_pred             --------------------------------------------------------------------CCCC-CCHHHHH
Confidence                                                                                1223 3334444


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHH--HcCCEEEEeccccccc---cCCCCCCccccCCCccCceEEEcCCc
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSH--QHGALTFVDEVHAVGL---YGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~--~~gv~li~Dea~~~g~---~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      +..+++++++++++++||||.++|.+++.++++  ++|+++|+||+|+.+.   .+....+...... ..+.+++++|+|
T Consensus       148 ~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~s  226 (365)
T 3get_A          148 ETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIK-EFDNVLYLGTFS  226 (365)
T ss_dssp             HHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH-HCTTEEEEEESS
T ss_pred             HHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhc-cCCCEEEEeecc
Confidence            444467899999999999999999888888887  6799999999999443   2222112211111 235789999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |.+|.+|   |++++++++++.+......+    +.++..++++.++++.  .+++++.+++++++++++.+.|++.++.
T Consensus       227 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~g~~  300 (365)
T 3get_A          227 KLYGLGGLRIGYGIANANIISAFYKLRAPF----NVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKHNIK  300 (365)
T ss_dssp             STTSCTTTCCEEEEECHHHHHHHHHHSCTT----CSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hHhcCcchheEEEEcCHHHHHHHHHhcCCC----CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            9998656   99999999999988766544    5788888888888873  3567888999999999999999999888


Q ss_pred             cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.++.+.++++.++.. +..++.+.|. ++||.+.++..|.    .+++|++++   +++|+++++++|++++
T Consensus       301 ~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~gi~v~~g~~~~----~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          301 IIDSYTNFITYFFDEK-NSTDLSEKLL-KKGIIIRNLKSYG----LNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             ECCCSSSEEEEECSSS-CHHHHHHHHH-TTTEECEECGGGT----CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             ECCCCCeEEEEECCCC-CHHHHHHHHH-HCCEEEEECccCC----CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence            8777888888888764 6788999995 8999999988654    679999998   8999999999999875

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.97  E-value=1.6e-30  Score=266.79  Aligned_cols=345  Identities=12%  Similarity=0.088  Sum_probs=248.4

Q ss_pred             CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-----cEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-----AGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~i~~~sGt~a~   88 (514)
                      .|+.++||.++.+.  .+|.+.+++.++++...  ...+....+..++.+++.+.+.+.+|.+     ..+++++|++++
T Consensus        45 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al  122 (404)
T 2o1b_A           45 GPLPLINMAVGIPDGPTPQGIIDHFQKALTIPE--NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGL  122 (404)
T ss_dssp             CSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHH--HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHH
T ss_pred             CCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHH
Confidence            45678999765543  47889999988874310  0011111234455555555555544753     456566667889


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++..  +||.|+++.+.|.+....++..|.+++.++... +.                     |           
T Consensus       123 ~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~---------------------~-----------  167 (404)
T 2o1b_A          123 VAVPTCVIN--PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PH---------------------Y-----------  167 (404)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TT---------------------C-----------
T ss_pred             HHHHHHhcC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-cc---------------------C-----------
Confidence            999988865  999999999999999888887777766554310 00                     0           


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                               ..|.+.+
T Consensus       168 -------------------------------------------------------------------------~~d~~~l  174 (404)
T 2o1b_A          168 -------------------------------------------------------------------------LPDWSKV  174 (404)
T ss_dssp             -------------------------------------------------------------------------CCCGGGS
T ss_pred             -------------------------------------------------------------------------cCCHHHH
Confidence                                                                                     0144555


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      ++.+.    ++++++++++++||||.++|   +++|.++|+++|+++|+||+|+.+..+....++....+ ..+.+++++
T Consensus       175 ~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~  249 (404)
T 2o1b_A          175 DSQII----DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN-GKDVAIEIY  249 (404)
T ss_dssp             CHHHH----HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT-HHHHEEEEE
T ss_pred             HHhhc----cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC-CCCCEEEEE
Confidence            55553    24789999999999999998   78999999999999999999995543222212222211 125689999


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      |+||++|.+|   ||+++++++++.+......+  +.+.+++.++++.++|+.. ..++++.+++++++++++.+.|++.
T Consensus       250 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~  326 (404)
T 2o1b_A          250 SLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHT--NAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKA  326 (404)
T ss_dssp             ESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecchhccCchhheEeEecCHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998656   99999999998887665443  3467888888888888764 4567788999999999999999998


Q ss_pred             CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        403 GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       403 g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++.+..+.++ ++++.++...+..++.+.|++++||.+.++..|. ..+.+++|++++.  +++++++++++|++++++.
T Consensus       327 g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~~  403 (404)
T 2o1b_A          327 DLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFG-ENGNRYVRISLAL--DDQKLDEAAIRLTELAYLY  403 (404)
T ss_dssp             TCCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGC-GGGTTEEEEECCS--CTTHHHHHHHHHHGGGGGG
T ss_pred             CCeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhC-cCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHhh
Confidence            8877666655 5778887655677889998656899999987653 2246799999984  7889999999999876553

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.97  E-value=6.2e-30  Score=259.79  Aligned_cols=342  Identities=17%  Similarity=0.181  Sum_probs=241.2

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l   95 (514)
                      .++|+++.. ..+|++.+++.+++.. ++.....+...++..+...++++++++++|.+  .+++++|||+|+..++.++
T Consensus         3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~   81 (384)
T 1eg5_A            3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV   81 (384)
T ss_dssp             EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred             EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhh
Confidence            466776554 4578999999999985 22211112222334567789999999999865  5677778899999999888


Q ss_pred             cc--cCCCceEEecCccchhhhhhh---hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         96 GK--MIPGLHYISDAGNHASMIQGI---RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        96 ~~--~~~gd~v~~~~~~h~~~~~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ..  ..+||.|+++.++|.+....+   +..|.+++.++.++ +                                    
T Consensus        82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------  124 (384)
T 1eg5_A           82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-R------------------------------------  124 (384)
T ss_dssp             HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-T------------------------------------
T ss_pred             hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-C------------------------------------
Confidence            61  139999999999999876554   44555554433210 0                                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                +                                            ..|.+.+++
T Consensus       125 --------------------------~--------------------------------------------~~d~~~l~~  134 (384)
T 1eg5_A          125 --------------------------G--------------------------------------------VVKLEELEK  134 (384)
T ss_dssp             --------------------------S--------------------------------------------CBCHHHHHH
T ss_pred             --------------------------C--------------------------------------------ccCHHHHHH
Confidence                                      0                                            013444444


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC--CEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g--v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      .+    +++++++++++++||+|.++|+++|.++|++||  +++|+||+|+++..   .  + +...  .++|++++|+|
T Consensus       135 ~i----~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~---~--~-~~~~--~~~di~~~s~s  202 (384)
T 1eg5_A          135 LV----DEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI---P--F-SLEK--LEVDYASFSAH  202 (384)
T ss_dssp             HC----CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---C--C-CCTT--TCCSEEEEEGG
T ss_pred             Hh----CCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCc---c--c-Cchh--cCCCEEEecHH
Confidence            44    346899999999999999999999999999999  99999999985432   1  1 1222  26899999999


Q ss_pred             ccccCCC-eEEEecHHH--HHHHHhhcC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        329 KAFGNIG-GYIVGTKNF--IDTIRSYAA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       329 K~lg~~G-G~l~~~~~~--~~~l~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      |++|+.| |++++++++  .+.+..... ......+.+...+.++.++++... +++++.+++++++++++.+.|++.++
T Consensus       203 K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~  281 (384)
T 1eg5_A          203 KFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGA  281 (384)
T ss_dssp             GGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhcCCCceEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            9998877 999998875  211111000 000133677888888888888753 46788999999999999999998777


Q ss_pred             ccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----------------CCCcEEEEEeCCCCCH
Q psy16848        405 PVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----------------VGEEKIRLAPTPFHTR  464 (514)
Q Consensus       405 ~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----------------~~~~~iRl~~~~~~t~  464 (514)
                      .+..+    ...++.+.++. .+..++.+.|. ++||.+.++..|...                ...+++|++++..+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  359 (384)
T 1eg5_A          282 HIITPLEISLPNTLSVSFPN-IRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE  359 (384)
T ss_dssp             EECSCTTSBCTTEEEEECTT-CCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred             EEeCCcccCCCCEEEEEeCC-CCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence            76544    23467777764 35778989884 999999987644321                0147999999988999


Q ss_pred             HHHHHHHHHHHHHHHHcCC
Q psy16848        465 EMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       465 e~id~~~~~l~~~l~~~~~  483 (514)
                      +|+++++++|++++++++.
T Consensus       360 ~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          360 EEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             HHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988754

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.97  E-value=9.6e-30  Score=262.92  Aligned_cols=341  Identities=13%  Similarity=0.077  Sum_probs=248.8

Q ss_pred             cCCceeeecccCCC------CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-------CCcEEEE
Q psy16848         15 KSNRVTCRLSSVQY------KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-------KEAGLVF   81 (514)
Q Consensus        15 ~~g~~~~d~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~~~i~~   81 (514)
                      ..++.+||++.+++      ..+|.+++++.++++....  .+    |+......++++.++++++       .+.++++
T Consensus        51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~--~~----y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t  124 (427)
T 3dyd_A           51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY--NG----YAPSIGFLSSREEIASYYHCPEAPLEAKDVILT  124 (427)
T ss_dssp             CTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCS--SS----CCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEE
T ss_pred             cCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcC--CC----CCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEe
Confidence            35677899976554      3478999999999986321  11    1122334678888888876       3456777


Q ss_pred             eccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         82 TSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        82 ~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +|||+|+..++.++..  +||.|+++.++|......++..|.+++.++..+                             
T Consensus       125 ~g~t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-----------------------------  173 (427)
T 3dyd_A          125 SGCSQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLP-----------------------------  173 (427)
T ss_dssp             SSHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG-----------------------------
T ss_pred             cCcHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeccc-----------------------------
Confidence            7889999999988876  999999999999888877777777666543310                             


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (427)
T 3dyd_A          174 --------------------------------------------------------------------------------  173 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCc
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQL  317 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~  317 (514)
                      ..++..+.+.+++...++++++++++++||||.+++   +++|.++|+++|+++|+||+|+.+.. +....++....  .
T Consensus       174 ~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~--~  251 (427)
T 3dyd_A          174 EKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS--T  251 (427)
T ss_dssp             GGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC--S
T ss_pred             ccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC--C
Confidence            011111223333333456889999999999999999   99999999999999999999994333 22221222111  1


Q ss_pred             cCceEEEcCCcccccCCC---eEEEec-------HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVGT-------KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      ...+++++|+||.++.+|   ||++++       +++.+.+......   ..+.++..++++.++|+....+++++.+++
T Consensus       252 ~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~  328 (427)
T 3dyd_A          252 DVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR---ILGPCTIVQGALKSILCRTPGEFYHNTLSF  328 (427)
T ss_dssp             SCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            134588899999988767   999876       4677666654322   236788899999999986545667888999


Q ss_pred             HHHHHHHHHHHHHhC-CCccccCC-CcEEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        388 HQDIVAYLRNELIQI-GFPVEHTP-SHIIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      ++++++++.+.|+++ ++.+..+. +.++++.++.     ..+..++++.|++++||.+.++..+..   ++++|++++ 
T Consensus       329 ~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~---~~~iRis~~-  404 (427)
T 3dyd_A          329 LKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY---PNFIRVVIT-  404 (427)
T ss_dssp             HHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEESC-
T ss_pred             HHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC---CCeEEEEEC-
Confidence            999999999999998 87766555 4466666652     245678888886689999999886542   579999987 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcC
Q psy16848        461 FHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~~  482 (514)
                       ++++++++++++|++++++..
T Consensus       405 -~~~e~i~~~l~~l~~~l~~~~  425 (427)
T 3dyd_A          405 -VPEVMMLEACSRIQEFCEQHY  425 (427)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCHHHHHHHHHHHHHHHHHhh
Confidence             789999999999999998764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.97  E-value=1.3e-29  Score=260.12  Aligned_cols=348  Identities=17%  Similarity=0.105  Sum_probs=244.8

Q ss_pred             CCceeeecccCCC--C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSVQY--K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a   87 (514)
                      .|+.++||.++..  .  .+|++.+++.+++++.+.... +....+..++.+++.+.+.+.+|    .+..+++++|++|
T Consensus        32 ~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a  110 (407)
T 2zc0_A           32 KGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA  110 (407)
T ss_dssp             SSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred             CCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence            4557899965432  2  357899999999987421111 11111233444444444443337    2345666677899


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.++..  +||.|+++.+.|.+....++..|.+++.++.+. +                                 
T Consensus       111 ~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~---------------------------------  154 (407)
T 2zc0_A          111 LDLLGRVLID--PGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-D---------------------------------  154 (407)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T---------------------------------
T ss_pred             HHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-C---------------------------------
Confidence            9999988865  999999999999999888887777766554310 0                                 


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                ..|.+.
T Consensus       155 --------------------------------------------------------------------------~~d~~~  160 (407)
T 2zc0_A          155 --------------------------------------------------------------------------GMRVDL  160 (407)
T ss_dssp             --------------------------------------------------------------------------EECHHH
T ss_pred             --------------------------------------------------------------------------CCCHHH
Confidence                                                                                      014555


Q ss_pred             HHHHHhhc--cCCCceEE-EEecCCCCCccccCH---HHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCc
Q psy16848        248 LTQVLENM--DVKIPKLV-AFETVHSMTGAICPL---KELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNM  320 (514)
Q Consensus       248 l~~~l~~~--~~~~~~~v-v~~~~~nptG~~~~l---~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~  320 (514)
                      +++.+++.  ..+++++| ++++++||+|.++|.   ++|.++|++||+++|+||+|+.+.. +....++....  ..+.
T Consensus       161 l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~  238 (407)
T 2zc0_A          161 LEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD--NEGR  238 (407)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC--SSCC
T ss_pred             HHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC--CCCC
Confidence            55555521  11247776 578999999999995   5999999999999999999995543 22211222221  1246


Q ss_pred             eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hh-chHHHHHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SS-QEGVELRAKHQDIVAYL  395 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~~l  395 (514)
                      +++++|+||++++ |   |++++++++++.+......+  +.+.++..+.++.++++.. .. .++++.+++++++++++
T Consensus       239 ~i~~~s~sK~~~~-G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  315 (407)
T 2zc0_A          239 VIVAGTLSKVLGT-GFRIGWIIAEGEILKKVLMQKQPI--DFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIM  315 (407)
T ss_dssp             EEEEEESTTTTCT-TSCCEEEECCHHHHHHHHHHHTTT--TSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHH
T ss_pred             EEEEcccccccCC-CcceEEEecCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            7899999999994 5   99999999999888766554  3356788888888888743 12 34567888889999999


Q ss_pred             HHHHHhC--CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHH
Q psy16848        396 RNELIQI--GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       396 ~~~L~~~--g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      .+.|++.  ++.+..+. +.++++.++...+..++.+.|. ++ ||.+.++..+... .+.+++|++++.. ++++++++
T Consensus       316 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~  393 (407)
T 2zc0_A          316 LKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELM-EREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIG  393 (407)
T ss_dssp             HHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHHH-HHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHH
T ss_pred             HHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHHH-HhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHH
Confidence            9999874  66665444 4577888876556788999996 66 9999998765432 2467999999865 89999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      +++|+++++++
T Consensus       394 ~~~l~~~l~~~  404 (407)
T 2zc0_A          394 IKKLAKLYKEK  404 (407)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.97  E-value=6.2e-30  Score=260.68  Aligned_cols=339  Identities=12%  Similarity=0.076  Sum_probs=247.9

Q ss_pred             ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccc
Q psy16848         18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDST   91 (514)
Q Consensus        18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~   91 (514)
                      ..++|+..++  +..+|++.+++.+++.+....     +..+..++.+++++++++++|    .+.+++++||++|+..+
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~-----y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~  106 (391)
T 4dq6_A           32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYG-----YTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLL  106 (391)
T ss_dssp             SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCC-----CBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CCceeccccCCCCCCCHHHHHHHHHHHhCCCCC-----CCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHH
Confidence            4457775443  224789999999988752221     122456888999999999887    34567778888899999


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCC-ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~-d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      +.++..  +||+|+++.++|.+....++..|.+++.++.+ ..+                    +.|             
T Consensus       107 ~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------------~~~-------------  151 (391)
T 4dq6_A          107 INELTK--ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLEN--------------------GNY-------------  151 (391)
T ss_dssp             HHHHSC--TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTT--------------------SCE-------------
T ss_pred             HHHhCC--CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCC--------------------Cce-------------
Confidence            988866  99999999999999998888888877765431 000                    000             


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                             .-|.+.+++
T Consensus       152 -----------------------------------------------------------------------~~d~~~l~~  160 (391)
T 4dq6_A          152 -----------------------------------------------------------------------IMDYEDIEN  160 (391)
T ss_dssp             -----------------------------------------------------------------------ECCHHHHHH
T ss_pred             -----------------------------------------------------------------------EeeHHHHHH
Confidence                                                                                   014455555


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++     ++++++++++||||.+++   +++|.++|++||+++|+||+|+.+.. +....++........+.+++++|
T Consensus       161 ~l~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s  235 (391)
T 4dq6_A          161 KIKD-----VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMA  235 (391)
T ss_dssp             HCTT-----EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEC
T ss_pred             Hhhc-----CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEe
Confidence            5433     789999999999999977   79999999999999999999995433 22221221111000245688999


Q ss_pred             CcccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-
Q psy16848        327 LGKAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-  401 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  401 (514)
                      +||.+|.+|   |++++++ ++.+.+......+. ..+.+++.++++.++++.. .+.+++.+++++++++++.+.|++ 
T Consensus       236 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~  313 (391)
T 4dq6_A          236 PTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID-IKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFAIKYINEN  313 (391)
T ss_dssp             SHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhccCcccceEEEEeCCHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999998656   9998875 88888876543321 2267788888888888753 455778899999999999999988 


Q ss_pred             C-CCccccCCCcEE-EEEeCC-CccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        402 I-GFPVEHTPSHII-PIKIGN-PALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       402 ~-g~~~~~~~~~~~-~i~l~~-~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      . ++.+..+.++++ ++.++. ..+..++.+.|+ ++ ||.+.++..+.. .+.+++|++++  ++++++++++++|+++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~v~~g~~~~~-~~~~~iRis~~--~~~~~i~~~l~~l~~~  389 (391)
T 4dq6_A          314 MPKLKVRKPEGTYLLWVDFSALGLSDEELESILV-QKGKVALNQGNSFGI-GGSGYQRINLA--CPRSMLEEALIRIKNA  389 (391)
T ss_dssp             CTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHH-HTTCEECEEGGGGCT-TCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred             CCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHH-HhCCEEeeCchhhCC-CCCCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence            4 787777766644 477764 456789999996 66 999999886543 34689999998  6899999999999987


Q ss_pred             H
Q psy16848        478 W  478 (514)
Q Consensus       478 l  478 (514)
                      +
T Consensus       390 l  390 (391)
T 4dq6_A          390 I  390 (391)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.97  E-value=3e-30  Score=267.10  Aligned_cols=351  Identities=13%  Similarity=0.111  Sum_probs=242.6

Q ss_pred             CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CC-CcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QK-EAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~-~~~i~~~sGt~a~   88 (514)
                      +++.++|+..+++.  .+|.+.+++.++++.++...+..  .++......++++.+++++    +. +..+++++|++++
T Consensus        54 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~a  131 (432)
T 3ei9_A           54 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCD  131 (432)
T ss_dssp             TTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred             CCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCcc--CCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHH
Confidence            45678999887765  57899999999999865433222  1222233456666666664    43 3456666666554


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      +.++.++..  +||.|+++.+.|.+...+++..+...+.....                .                    
T Consensus       132 l~~l~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~----------------~--------------------  173 (432)
T 3ei9_A          132 ISRLQVMFG--SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDV----------------Q--------------------  173 (432)
T ss_dssp             HHHHHHHHC--TTCCEEEEESCCTHHHHHHHHHTCSCCEETTT----------------T--------------------
T ss_pred             HHHHHHHcC--CCCEEEEeCCCCHHHHHHHHHcCCcccccccc----------------c--------------------
Confidence            445666765  99999999999999998887776532110000                0                    


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                      ...+++.++.++...+
T Consensus       174 ----------------------------------------------------------------~~~~~~~~~~~~~~~~  189 (432)
T 3ei9_A          174 ----------------------------------------------------------------KYGNIEYMRCTPENGF  189 (432)
T ss_dssp             ----------------------------------------------------------------EETTCEEEECCGGGTT
T ss_pred             ----------------------------------------------------------------ccCceEEeccCcccCC
Confidence                                                                            0001122221100000


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      ...+++  .++++++++++|+||||.+++   +++|+++|++||+++|+||+|+.+..+....++....+ ..+.+++++
T Consensus       190 ~~~l~~--~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~-~~~~~i~~~  266 (432)
T 3ei9_A          190 FPDLST--VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPG-AEEVAMETA  266 (432)
T ss_dssp             SCCGGG--CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTT-GGGTEEEEE
T ss_pred             cCChhh--CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCC-CCCeEEEEe
Confidence            001222  246889999999999999998   67888889999999999999996555443333433322 236789999


Q ss_pred             CCcccccCCC---eEEEecHHH--------HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        326 TLGKAFGNIG---GYIVGTKNF--------IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                      ||||.+|.+|   ||+++++++        .+.+.......  ..+.+++.+.++.+++.....++++++++++++++++
T Consensus       267 S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  344 (432)
T 3ei9_A          267 SFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC--FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNI  344 (432)
T ss_dssp             ESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHS--CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccc--cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            9999999768   999998887        66665543222  2356788888888877532234677889999999999


Q ss_pred             HHHHHHhCCCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848        395 LRNELIQIGFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD  473 (514)
Q Consensus       395 l~~~L~~~g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~  473 (514)
                      +.+.|++.|+.+..+ .+.++++.++ ..+..++++.|++++||.+.++..|. +.+++++|+++.  .+++++++++++
T Consensus       345 l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~~g~~f~-~~~~~~iRis~~--~~~e~l~~~l~r  420 (432)
T 3ei9_A          345 IIDTFTSLGYDVYGGKNAPYVWVHFP-NQSSWDVFAEILEKTHVVTTPGSGFG-PGGEGFVRVSAF--GHRENILEACRR  420 (432)
T ss_dssp             HHHHHHHTTCCEEECSSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECC--SCHHHHHHHHHH
T ss_pred             HHHHHHHCCceecCCCcceEEEEECC-CCCHHHHHHHHHHHCCEEEeCchHhC-CCCCCEEEEEec--CCHHHHHHHHHH
Confidence            999999998887764 5668888887 34577888888756799999998755 445789999985  589999999999


Q ss_pred             HHHHHH
Q psy16848        474 LLAVWK  479 (514)
Q Consensus       474 l~~~l~  479 (514)
                      |++--.
T Consensus       421 l~~~~~  426 (432)
T 3ei9_A          421 FKQLYK  426 (432)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            987544

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.97  E-value=1.7e-29  Score=257.50  Aligned_cols=338  Identities=17%  Similarity=0.127  Sum_probs=244.2

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~   89 (514)
                      ++..++|+..++.  ..+|.+.+++.+.+....   ..+....|..++.+++++.+.+.+|.    +..+++++|++|+.
T Consensus        29 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~  105 (385)
T 1b5p_A           29 QGVDLVALTAGEPDFDTPEHVKEAARRALAQGK---TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF  105 (385)
T ss_dssp             TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence            4567889966554  346789999988886521   12222234556666666666665552    45677777888999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.++|......++..|.+++.++...                                     
T Consensus       106 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-------------------------------------  146 (385)
T 1b5p_A          106 NLFQAILD--PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLP-------------------------------------  146 (385)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCG-------------------------------------
T ss_pred             HHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCc-------------------------------------
Confidence            99988865  999999999999988877777776666544310                                     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              .+++..+.
T Consensus       147 ------------------------------------------------------------------------~~~~~~d~  154 (385)
T 1b5p_A          147 ------------------------------------------------------------------------EEGFVPDP  154 (385)
T ss_dssp             ------------------------------------------------------------------------GGTTCCCH
T ss_pred             ------------------------------------------------------------------------ccCCCCCH
Confidence                                                                                    00111222


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +.+++..+++++++++++|+||||.+++   +++|.++|++||+++|+||+|+.+..+....++...   ..+.+++++|
T Consensus       155 ~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~i~~~s  231 (385)
T 1b5p_A          155 ERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV---APEHTLTVNG  231 (385)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT---CTTTEEEEEE
T ss_pred             HHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHc---CCCCEEEEEe
Confidence            3344444456899999999999999998   899999999999999999999955442221122222   1167899999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI---LSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      |||.+|.+|   ||+++++++++.+.......  +.+.+...+.++.++++.   . ..++++.+++++++++++.+.|+
T Consensus       232 ~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~  308 (385)
T 1b5p_A          232 AAKAFAMTGWRIGYACGPKEVIKAMASVSRQS--TTSPDTIAQWATLEALTNQEAS-RAFVEMAREAYRRRRDLLLEGLT  308 (385)
T ss_dssp             STTTTTCGGGCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcCCcccceEEEEeCHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998767   99999999988887654333  335677888888888863   2 34577888999999999999998


Q ss_pred             hCCCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       401 ~~g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++|+.+..+.++ ++++.++. +.+..++.+.|. ++||.+.++..|..   ++++|++++  ++++++++++++|++++
T Consensus       309 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~---~~~iRis~~--~~~~~i~~~l~~l~~~l  382 (385)
T 1b5p_A          309 ALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAA---FGHVRLSYA--TSEENLRKALERFARVL  382 (385)
T ss_dssp             HHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTC---TTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred             HCCCeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCC---CCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence            888877666655 55566652 345778999996 99999999886532   569999998  78899999999988765


Q ss_pred             H
Q psy16848        479 K  479 (514)
Q Consensus       479 ~  479 (514)
                      +
T Consensus       383 ~  383 (385)
T 1b5p_A          383 G  383 (385)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.97  E-value=1e-29  Score=263.45  Aligned_cols=339  Identities=19%  Similarity=0.180  Sum_probs=246.4

Q ss_pred             cCCceeeeccc-CCC--C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSS-VQY--K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~-~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++||.+ ..+  +  .||++.+++.+++++....  + ..  ...+...++++++++++|.+++++++||++|+.
T Consensus        73 ~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~--~-~~--~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~  147 (439)
T 2oat_A           73 VEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT--S-RA--FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGE  147 (439)
T ss_dssp             TTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCC--C-TT--SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcc--c-Cc--cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHH
Confidence            46788999966 322  2  4799999999999875422  1 11  134678899999999999888999999999999


Q ss_pred             cchhhccc-------cCCC-ceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         90 STLFTLGK-------MIPG-LHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        90 ~~l~~l~~-------~~~g-d~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      .++..+..       ..+| |.|++.+ .+|.....+++..+......                                
T Consensus       148 ~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~--------------------------------  195 (439)
T 2oat_A          148 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD--------------------------------  195 (439)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHT--------------------------------
T ss_pred             HHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhccc--------------------------------
Confidence            99987641       1245 6665554 55566665555444211000                                


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                          .+.....+++.+
T Consensus       196 --------------------------------------------------------------------~~~p~~~~v~~~  207 (439)
T 2oat_A          196 --------------------------------------------------------------------GFGPFMPGFDII  207 (439)
T ss_dssp             --------------------------------------------------------------------TSCSCCTTEEEE
T ss_pred             --------------------------------------------------------------------CCCCCCCCeEEe
Confidence                                                                                000011345566


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCcccc----CHHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccCC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERDG  315 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~----~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~~  315 (514)
                      +.+|++.+++.++   .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+ | +++.+..+. +..+
T Consensus       208 ~~~d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-~g~~g~~~~~~~~~  282 (439)
T 2oat_A          208 PYNDLPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-G-LARTGRWLAVDYEN  282 (439)
T ss_dssp             CSSCHHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGT
T ss_pred             CCCCHHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CccCCcchhHHHhC
Confidence            6678888887775   24588999999999999876    49999999999999999999997 3 233332221 3333


Q ss_pred             CccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      .  .+|++  |+||++++.   +|++++++++++.+.......  +.+.+++.++++.++++.+.++   +..++++++.
T Consensus       283 ~--~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~  353 (439)
T 2oat_A          283 V--RPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS--TYGGNPLGCRVAIAALEVLEEE---NLAENADKLG  353 (439)
T ss_dssp             C--CCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCC--SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred             C--CCcEE--EecccccCCCCCeEEEEECHHHHhccCCCCccc--CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHH
Confidence            3  67887  999999763   599999998887775543333  4578899999999999987544   3788899999


Q ss_pred             HHHHHHHHhCCCcc---ccCCCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        393 AYLRNELIQIGFPV---EHTPSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       393 ~~l~~~L~~~g~~~---~~~~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      +++.+.|+++++++   ..+.+.++++.+++.  .+..++++.|+ ++||.+.+.       +.+++|++++..+|++|+
T Consensus       354 ~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~-~~Gv~v~~~-------~~~~iRi~~~~~~t~e~i  425 (439)
T 2oat_A          354 IILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR-DNGLLAKPT-------HGDIIRFAPPLVIKEDEL  425 (439)
T ss_dssp             HHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHH-HTTEECCBS-------SSSEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHH-HCCeEEecC-------CCCEEEEECccCCCHHHH
Confidence            99999998876553   234667888888754  34678999996 899998752       356899999989999999


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        468 DKFVTDLLAVWKS  480 (514)
Q Consensus       468 d~~~~~l~~~l~~  480 (514)
                      ++++++|++++++
T Consensus       426 ~~~l~~l~~~l~~  438 (439)
T 2oat_A          426 RESIEIINKTILS  438 (439)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.97  E-value=6.5e-30  Score=262.80  Aligned_cols=344  Identities=15%  Similarity=0.135  Sum_probs=246.1

Q ss_pred             eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEeccccccccc
Q psy16848         19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDST   91 (514)
Q Consensus        19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~~   91 (514)
                      .++||..+..  ..+|.+.+++.++++..   ...+....|..++.+++.+.+.+.+|.    + .+++++||++|+..+
T Consensus        26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~  102 (411)
T 2o0r_A           26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGG---VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA  102 (411)
T ss_dssp             TCEESSCSSCSSCCCHHHHHHHHHHHHTT---CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred             CeeeccCcCCCCCCCHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence            4789865543  34789999999999762   111222234456666666666665563    3 677777888999999


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.+.|.+....++..|.+++.++.+...                    ..|              
T Consensus       103 ~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~--------------------~~~--------------  146 (411)
T 2o0r_A          103 VLGLVE--PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDG--------------------RGF--------------  146 (411)
T ss_dssp             HHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEET--------------------TEE--------------
T ss_pred             HHHhcC--CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccc--------------------cCC--------------
Confidence            988865  99999999999999888777777766654331000                    000              


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                            ..|.+.+++.
T Consensus       147 ----------------------------------------------------------------------~~d~~~l~~~  156 (411)
T 2o0r_A          147 ----------------------------------------------------------------------ALDADALRRA  156 (411)
T ss_dssp             ----------------------------------------------------------------------ECCHHHHHHH
T ss_pred             ----------------------------------------------------------------------CCCHHHHHHh
Confidence                                                                                  0144555554


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCC
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +    ++++++|++++++||+|.++|   +++|.++|++||+++|+||+|+.+.. |....++..... ..+.|++++|+
T Consensus       157 l----~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~i~~~s~  231 (411)
T 2o0r_A          157 V----TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG-MAERTITISSA  231 (411)
T ss_dssp             C----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT-TGGGEEEEEEH
T ss_pred             h----ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccC-CCCCEEEEeec
Confidence            4    346889999999999999998   59999999999999999999995543 222222222211 24689999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      ||.+|.+|   |++++++++++.+.......  +.+.+++.++++.++|+.. ..++++++++++++++++.+.|++.|+
T Consensus       232 sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~  308 (411)
T 2o0r_A          232 AKMFNCTGWKIGWACGPAELIAGVRAAKQYL--SYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGF  308 (411)
T ss_dssp             HHHTTCTTTCEEEEECCHHHHHHHHHHHHHH--TSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhcCCccceEEEEeeCHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99998657   99999999988887654333  2345666777778888754 456778899999999999999988888


Q ss_pred             ccccCCCc-EEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCC----------CCcEEEEEeCCCCCHHHHHHHH
Q psy16848        405 PVEHTPSH-IIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPV----------GEEKIRLAPTPFHTREMIDKFV  471 (514)
Q Consensus       405 ~~~~~~~~-~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------~~~~iRl~~~~~~t~e~id~~~  471 (514)
                      .+..+.++ ++++.++..  .+..++.+.|++++||.+.++..+....          +.+++|++++  .+++++++++
T Consensus       309 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~  386 (411)
T 2o0r_A          309 AVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAI  386 (411)
T ss_dssp             EECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHH
T ss_pred             EecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHH
Confidence            77666555 677887641  3467888888657899999987653222          4578999997  4899999999


Q ss_pred             HHHHHHHHHc
Q psy16848        472 TDLLAVWKSL  481 (514)
Q Consensus       472 ~~l~~~l~~~  481 (514)
                      ++|++++++.
T Consensus       387 ~~l~~~~~~~  396 (411)
T 2o0r_A          387 RRLSVLAERP  396 (411)
T ss_dssp             HHHGGGGC--
T ss_pred             HHHHHHHhcc
Confidence            9999876554

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.97  E-value=1.2e-29  Score=259.28  Aligned_cols=340  Identities=15%  Similarity=0.098  Sum_probs=248.9

Q ss_pred             cCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----C-cEEEEecccc
Q psy16848         15 KSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----E-AGLVFTSCYV   86 (514)
Q Consensus        15 ~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~-~~i~~~sGt~   86 (514)
                      .+|+.++||.+++  +..+|.+.+++.+++...    ..+....|..++.+++++.+.+.+|.     + ..+++++|++
T Consensus        27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~  102 (396)
T 3jtx_A           27 PEGMEAVPLHIGEPKHPTPKVITDALTASLHEL----EKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE  102 (396)
T ss_dssp             CTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGG----GSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred             ccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhc----cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence            3678899997654  334788999998877532    11222345567778888888777663     3 5676777788


Q ss_pred             ccccchhhccccCCC-----ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         87 ANDSTLFTLGKMIPG-----LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        87 a~~~~l~~l~~~~~g-----d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      ++..++.++..  +|     |.|+++.++|.+....++..|.+++.++..+ +                           
T Consensus       103 al~~~~~~~~~--~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~---------------------------  152 (396)
T 3jtx_A          103 ALFSFVQTVLN--PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPA-P---------------------------  152 (396)
T ss_dssp             HHHHHHHHHCC--C---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCT-T---------------------------
T ss_pred             HHHHHHHHHhC--CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCC-C---------------------------
Confidence            89888888876  76     7999999999998888887777776554310 0                           


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                       +.                                             
T Consensus       153 ---------------------------------g~---------------------------------------------  154 (396)
T 3jtx_A          153 ---------------------------------SF---------------------------------------------  154 (396)
T ss_dssp             ---------------------------------TC---------------------------------------------
T ss_pred             ---------------------------------CC---------------------------------------------
Confidence                                             00                                             


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCcccc---C
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGER---D  314 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~---~  314 (514)
                      ..|++.+++.+.+    +++++++++|+||||.+++   +++|.++|++||+++|+||+|+.+..+. ...+....   .
T Consensus       155 ~~d~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  230 (396)
T 3jtx_A          155 NPDWRSISEEVWK----RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL  230 (396)
T ss_dssp             CCCGGGSCHHHHH----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT
T ss_pred             ccCHHHHHHhhcc----CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc
Confidence            0144555555543    4789999999999999999   5669999999999999999999543322 21111110   0


Q ss_pred             CCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      +...+.++++.|+||.++.+|   ||+++++++++.+.......  +.+.+++.+.++.++++.  ..++.+.+++++++
T Consensus       231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~  306 (396)
T 3jtx_A          231 GRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYH--GSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEK  306 (396)
T ss_dssp             TCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred             ccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence            112467899999999987767   99999999999887665443  446788889888888873  45678889999999


Q ss_pred             HHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-----CCCCcEEEEEeCCCCCHH
Q psy16848        392 VAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-----PVGEEKIRLAPTPFHTRE  465 (514)
Q Consensus       392 ~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-----~~~~~~iRl~~~~~~t~e  465 (514)
                      ++++.+.|++. +.+..+. +.++++.++. .+..++++.|++++||.+.++..|..     ..+.+++|++++.  +++
T Consensus       307 ~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~  382 (396)
T 3jtx_A          307 FERVIPILQQV-FDVKLPDASFYIWLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVA  382 (396)
T ss_dssp             HHHHHHHHTTT-SCCCCCSSSSEEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHH
T ss_pred             HHHHHHHHHhc-CCccCCCeeEEEEEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHH
Confidence            99999999886 4444444 4477788875 45778899987567999999987654     2356899999984  899


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        466 MIDKFVTDLLAVW  478 (514)
Q Consensus       466 ~id~~~~~l~~~l  478 (514)
                      ++++++++|++++
T Consensus       383 ~i~~~l~~l~~~l  395 (396)
T 3jtx_A          383 TCVKAAEDIVSLY  395 (396)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.97  E-value=1.7e-29  Score=261.60  Aligned_cols=346  Identities=9%  Similarity=0.036  Sum_probs=247.0

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~   89 (514)
                      +|..++||.++..  ..+|++.+++.+++....  ..++....|..++.+++.+.+.+.+|    .++.+++++||+++.
T Consensus        42 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~  119 (437)
T 3g0t_A           42 TGTKFCRMEMGVPGLPAPQIGIETEIQKLREGV--ASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCF  119 (437)
T ss_dssp             HTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTG--GGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCc--CcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHH
Confidence            4678999976553  347899999999998511  01111122333444444444444332    345677778888999


Q ss_pred             cchhhccccCCCc--eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         90 STLFTLGKMIPGL--HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        90 ~~l~~l~~~~~gd--~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .++.++....+||  .|+++.++|.+....++..|.+++.++.++ +                                 
T Consensus       120 ~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~---------------------------------  165 (437)
T 3g0t_A          120 VSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFE-Y---------------------------------  165 (437)
T ss_dssp             HHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGG-G---------------------------------
T ss_pred             HHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecC-C---------------------------------
Confidence            9988886113999  999999999999888877777766554310 0                                 


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                 +.                                             ..|.+.
T Consensus       166 ---------------------------~~---------------------------------------------~~d~~~  173 (437)
T 3g0t_A          166 ---------------------------RG---------------------------------------------EKLREK  173 (437)
T ss_dssp             ---------------------------CT---------------------------------------------THHHHH
T ss_pred             ---------------------------CC---------------------------------------------ccCHHH
Confidence                                       00                                             002334


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-------cccCCCc
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-------GERDGQL  317 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-------~~~~~~~  317 (514)
                      +++.++   +++++++++++|+||||.+++   +++|.++|++||+++|+||+|+.+..+. ..++       ..... .
T Consensus       174 l~~~l~---~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~-~  248 (437)
T 3g0t_A          174 LESYLQ---TGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVAN-Y  248 (437)
T ss_dssp             HHHHHT---TTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGG-T
T ss_pred             HHHHHh---cCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCC-C
Confidence            444442   345789999999999999998   7889999999999999999999554431 1112       12211 2


Q ss_pred             cCceEEEcCCcccccCCC---eEEEecHHHHH-H-----------------HHhhcCceEeccCCcHHHHHHHHHHHHHh
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVGTKNFID-T-----------------IRSYAAGFIFTTSLPPTVLAGAREAIRIL  376 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~~~~~a~~~~l~~~  376 (514)
                      .+.+++++|+||.+|.+|   ||+++++++++ .                 +.......  +.+.++..+.++.++++..
T Consensus       249 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~  326 (437)
T 3g0t_A          249 TDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYAL--SSGATHSAQWGMAAMLKAC  326 (437)
T ss_dssp             CSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhh--cCCCCHHHHHHHHHHHhCc
Confidence            467899999999998656   99999998888 6                 65444333  3467888888888888865


Q ss_pred             h--hchHHHHHHHHHHHHHHHHHHHHhCCCccc-------c-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC
Q psy16848        377 S--SQEGVELRAKHQDIVAYLRNELIQIGFPVE-------H-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT  446 (514)
Q Consensus       377 ~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-------~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~  446 (514)
                      .  ..++++.+++++++++++.+.|+++|+.+.       + ..+.++++.++ ..+..++.+.|. ++||.+.++..+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~-~~gi~v~~~~~~~  404 (437)
T 3g0t_A          327 NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK-GMDSSKLIEKFV-RYGMCAITLKTTG  404 (437)
T ss_dssp             HTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET-TCCHHHHHHHHH-HTTEECEESTTTT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC-CCCHHHHHHHHH-HcCeEEeeccccC
Confidence            2  112788999999999999999999988776       4 45567788887 456789999996 8899999887654


Q ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        447 VPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       447 ~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      . ...+++|++++ ..+++++++++++|++++++
T Consensus       405 ~-~~~~~iRis~~-~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          405 S-KRNEAMRICTS-LLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             C-CCTTCEEEECS-SSCGGGHHHHHHHHHHHHHH
T ss_pred             C-CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            2 22378999999 45899999999999998764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.97  E-value=1e-29  Score=262.85  Aligned_cols=353  Identities=14%  Similarity=0.088  Sum_probs=249.8

Q ss_pred             ceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEecccccccc
Q psy16848         18 RVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~   90 (514)
                      ..++||..+.+  ..+|.+.+++.+++.+.......+....|..++.+++.+.+.+.+|.    + .++++++|++|+..
T Consensus        37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~  116 (429)
T 1yiz_A           37 YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA  116 (429)
T ss_dssp             HCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHH
Confidence            35789866543  34789999999988753211111111224455666666666655562    3 56777778899999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|.+....++..|.+++.++....+.                                   
T Consensus       117 ~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~-----------------------------------  159 (429)
T 1yiz_A          117 TIQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKT-----------------------------------  159 (429)
T ss_dssp             HHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCS-----------------------------------
T ss_pred             HHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccc-----------------------------------
Confidence            9988865  999999999999998888887777766554310000                                   


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCChhHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLT  249 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~  249 (514)
                                                                                     +....... ..|.+.++
T Consensus       160 ---------------------------------------------------------------~~~~~~~~~~~d~~~l~  176 (429)
T 1yiz_A          160 ---------------------------------------------------------------GGTISSADWVLDNNELE  176 (429)
T ss_dssp             ---------------------------------------------------------------SSSEEGGGCBCCHHHHH
T ss_pred             ---------------------------------------------------------------cccccccCcccCHHHHH
Confidence                                                                           00000000 11455555


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+    .++++++++++++||+|.++|   +++|.++|++||+++|+||+|+.+.. +....++..... ..+.|++++
T Consensus       177 ~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~  251 (429)
T 1yiz_A          177 ALF----NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG-MWERTITIG  251 (429)
T ss_dssp             HHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTT-TGGGEEEEE
T ss_pred             HHh----ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccC-CcCceEEEe
Confidence            555    356899999999999999997   89999999999999999999994433 322222222211 246899999


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH-----hh-hchHHHHHHHHHHHHHHHH
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI-----LS-SQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~-~~~~~~~~~~~~~~~~~l~  396 (514)
                      |+||.+|++|   |++++++++++.+.......  +.+.+++.++++.++|+.     .. ...+++.+++++++++++.
T Consensus       252 s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  329 (429)
T 1yiz_A          252 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNC--VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMA  329 (429)
T ss_dssp             EHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             cchhccCCCCcceEEEEeCHHHHHHHHHHHhhc--ccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHH
Confidence            9999998657   99999999998887654333  336778888888888886     21 4567888999999999999


Q ss_pred             HHHHhCCCccccCC-CcEEEEEeCCC------------ccHHHHHHHHHHhCCeEEecccCCCCCC----CCcEEEEEeC
Q psy16848        397 NELIQIGFPVEHTP-SHIIPIKIGNP------------ALNTKICDMLLKEKGHYVQPINYPTVPV----GEEKIRLAPT  459 (514)
Q Consensus       397 ~~L~~~g~~~~~~~-~~~~~i~l~~~------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----~~~~iRl~~~  459 (514)
                      +.|++.++.+..+. +.++++.++..            .+..++++.|++++||.+.++..+....    +.+++|++++
T Consensus       330 ~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~  409 (429)
T 1yiz_A          330 SFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF  409 (429)
T ss_dssp             HHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC
T ss_pred             HHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec
Confidence            99998888776665 45778888753            3466788888657999999887543221    2579999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~  479 (514)
                        .+++++++++++|+++++
T Consensus       410 --~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          410 --KKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             --SCHHHHHHHHHHHHHHSC
T ss_pred             --CCHHHHHHHHHHHHHhcc
Confidence              489999999999998754

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=1.4e-29  Score=255.63  Aligned_cols=322  Identities=14%  Similarity=0.035  Sum_probs=243.5

Q ss_pred             CceeeecccCCC-C-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccch
Q psy16848         17 NRVTCRLSSVQY-K-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDSTL   92 (514)
Q Consensus        17 g~~~~d~~~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~l   92 (514)
                      ++.++|+.++.. + .+|++.+++.++++..    ..    +. .....+++++++++++.  +++++++|||+++..++
T Consensus        31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~----y~-~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~  101 (363)
T 3ffh_A           31 LTKITKLSSNENPLGTSKKVAAIQANSSVET----EI----YP-DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLT  101 (363)
T ss_dssp             CSCCEECSSCSCTTCCCHHHHHHHHTCBSCC----CB----C-----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred             CCceEEccCCCCCCCCCHHHHHHHHHHHHHh----hc----CC-CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHH
Confidence            357899976543 2 4788888887755421    11    11 23457899999999985  45677778888999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++.+  +||.|+++.+.|.+....++..|.+++.++.+. +                                      
T Consensus       102 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~--------------------------------------  140 (363)
T 3ffh_A          102 RVLLD--TTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ-D--------------------------------------  140 (363)
T ss_dssp             HHHCS--TTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT-T--------------------------------------
T ss_pred             HHHcc--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC-C--------------------------------------
Confidence            88865  999999999999998877777776666554420 0                                      


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                             .                                             ..|.+.+++.+
T Consensus       141 -----------------------~---------------------------------------------~~d~~~l~~~i  152 (363)
T 3ffh_A          141 -----------------------G---------------------------------------------EHDLEGMLNAI  152 (363)
T ss_dssp             -----------------------S---------------------------------------------CCCHHHHHHHC
T ss_pred             -----------------------C---------------------------------------------CcCHHHHHHhc
Confidence                                   0                                             01344444444


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                          +++++++++++++||||.++|.+++.++++.+  |+++|+||+|+.+..+.. .+...... ..+.+++++|+||.
T Consensus       153 ----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~i~~~s~sK~  226 (363)
T 3ffh_A          153 ----DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQP-EKHEKLVR-TYKNLIITRTFSKI  226 (363)
T ss_dssp             ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCC-CCCGGGGG-TCTTEEEEEESSST
T ss_pred             ----ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccc-cCHHHHhh-cCCCEEEEeechhh
Confidence                35689999999999999999999999998888  999999999994433321 12222221 23567999999999


Q ss_pred             ccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-CCCcc
Q psy16848        331 FGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-IGFPV  406 (514)
Q Consensus       331 lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~  406 (514)
                      +|.+|   |++++++++++.+......+    +.++..++++.++++.  .+++++.+++++++++++.+.|++ .++.+
T Consensus       227 ~g~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~  300 (363)
T 3ffh_A          227 YGLASARVGYGIADKEIIRQLNIVRPPF----NTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFAKRFEKVKL  300 (363)
T ss_dssp             TCCSSCCCEEEEECHHHHHHHHHTCCSC----CCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred             hcCchhceeeeecCHHHHHHHHHhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence            98657   99999999999988766433    6788999999998873  356778899999999999999999 58888


Q ss_pred             ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       407 ~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .++.+.++++.++.  +..++.+.|. ++||.+.++..+..   ++++|++++   +++|+++++++|+++
T Consensus       301 ~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~v~~g~~~~~---~~~iRis~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          301 YPANGNFVLIDLGI--EAGTIFSYLE-KNGYITRSGAALGF---PTAVRITIG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             CCCCSSEEEEECSS--CHHHHHHHHH-HTTEECEETTTTTC---TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCC--CHHHHHHHHH-HCCeEEEeCccCCC---CCeEEEECC---CHHHHHHHHHHHHHh
Confidence            77788888888875  5788999996 89999999876432   579999998   899999999999875

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.97  E-value=1.1e-29  Score=259.73  Aligned_cols=337  Identities=16%  Similarity=0.169  Sum_probs=242.2

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++||.++   .+++  +|++.+++.+++++....+.     ....+..++++++++++++.+++++++||++|+.
T Consensus        33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~  107 (395)
T 3nx3_A           33 DKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN-----LYYNENIAAAAKNLAKASALERVFFTNSGTESIE  107 (395)
T ss_dssp             TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT-----TSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHH
Confidence            367889999765   4454  79999999999987543221     1245788999999999999888999999999999


Q ss_pred             cchhhcccc-----CCCceEEecCccchh-hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         90 STLFTLGKM-----IPGLHYISDAGNHAS-MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        90 ~~l~~l~~~-----~~gd~v~~~~~~h~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      .++..+...     .++|.|++.++.|+. ...+....+...                                      
T Consensus       108 ~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~--------------------------------------  149 (395)
T 3nx3_A          108 GAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEK--------------------------------------  149 (395)
T ss_dssp             HHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHH--------------------------------------
T ss_pred             HHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcc--------------------------------------
Confidence            998876532     256777766555543 333333222110                                      


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                                                    +...+...+.++..++.+
T Consensus       150 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  167 (395)
T 3nx3_A          150 --------------------------------------------------------------YQKPFKPLISGVKFAKYN  167 (395)
T ss_dssp             --------------------------------------------------------------HHGGGCSCCSCEEEECTT
T ss_pred             --------------------------------------------------------------cccccCCCCCCcEEeCCC
Confidence                                                                          001111223456667777


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~  318 (514)
                      |++.+++.++    ++++++++++++|++|...+    +++|.++|++||+++|+||+|+ +|..|...  ..+..+.  
T Consensus       168 d~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~--~~~~~~~--  239 (395)
T 3nx3_A          168 DISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF--AYEHAQI--  239 (395)
T ss_dssp             CHHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGGTC--
T ss_pred             CHHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch--hHHhcCC--
Confidence            7777666653    56899999999999999977    9999999999999999999998 55544321  1122332  


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHH-HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNF-IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                      .+|++  |+||.+++ |   |++++++++ ++.+.+.....  +.+.+++.++++.++++.+..+.   ..++.+++.++
T Consensus       240 ~~d~~--t~sK~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~  311 (395)
T 3nx3_A          240 LPDIM--TSAKALGC-GLSVGAFVINQKVASNSLEAGDHGS--TYGGNPLVCAGVNAVFEIFKEEK---ILENVNKLTPY  311 (395)
T ss_dssp             CCSEE--EECGGGTT-TSCCEEEEECHHHHHHHSCTTCCSS--CBSCCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred             CCCEE--EecccccC-CCceEEEEEchhhhhhhcCCcccCC--CCCCCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Confidence            57877  78999976 5   999999998 88776554333  44778999999999998764433   45555556666


Q ss_pred             HHHHHHhC----C-CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        395 LRNELIQI----G-FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       395 l~~~L~~~----g-~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      +++.|.+.    . +....+.+.++++.+++.....++.+.|+ ++||.+.++.       .+++|++++..+|++++++
T Consensus       312 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-------~~~iRi~~~~~~t~e~i~~  383 (395)
T 3nx3_A          312 LEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQ-ENALLLISCG-------ENDLRFLPPLILQKEHIDE  383 (395)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHH-HTTEECEEET-------TTEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHH-HCCCEEecCC-------CCEEEEECCCCCCHHHHHH
Confidence            65555543    2 22334567788888876556788999996 8999998653       5699999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy16848        470 FVTDLLAVWKS  480 (514)
Q Consensus       470 ~~~~l~~~l~~  480 (514)
                      ++++|++++++
T Consensus       384 ~l~~l~~~l~~  394 (395)
T 3nx3_A          384 MSEKLRKALKS  394 (395)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.97  E-value=7.1e-30  Score=259.07  Aligned_cols=335  Identities=11%  Similarity=0.034  Sum_probs=244.2

Q ss_pred             cCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~   88 (514)
                      .+| .++||.++.  +..+|.+.+++.+++..    ...+....|..++.+++++++.+.+|.    +..+++++|++++
T Consensus        21 ~~g-~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al   95 (376)
T 3ezs_A           21 PKK-RGLDLGIGEPQFETPKFIQDALKNHTHS----LNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL   95 (376)
T ss_dssp             CSS-CCCBCSSCCCCSCCCHHHHHHHHTTGGG----GGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred             ccC-CEEEeCCCCCCCCCCHHHHHHHHHhhhh----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence            466 889997544  22478888888877632    111222234567777777777776674    4567777788889


Q ss_pred             ccchhhccccCC--CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         89 DSTLFTLGKMIP--GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        89 ~~~l~~l~~~~~--gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      ..++.++..  +  ||.|+++.+.|.+....++..|.+++.++.++.+.+                              
T Consensus        96 ~~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------------------  143 (376)
T 3ezs_A           96 FNFPSFVLF--DYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDF------------------------------  143 (376)
T ss_dssp             HHHHHHHTT--TCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTS------------------------------
T ss_pred             HHHHHHHcC--CCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCc------------------------------
Confidence            889888876  8  999999999999998888888887776654211000                              


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                                                                   +. 
T Consensus       144 -----------------------------------------------------------------------------~~-  145 (376)
T 3ezs_A          144 -----------------------------------------------------------------------------TP-  145 (376)
T ss_dssp             -----------------------------------------------------------------------------CC-
T ss_pred             -----------------------------------------------------------------------------ch-
Confidence                                                                                         00 


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCC----CccC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDG----QLHN  319 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~----~~~~  319 (514)
                      .+++.+.+    +++++++++|+||||.+++   +++|.++|++||+++|+||+|+.+..+....++.....    ...+
T Consensus       146 ~l~~~~~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (376)
T 3ezs_A          146 SLNEKELQ----EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFK  221 (376)
T ss_dssp             CCCHHHHH----HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCT
T ss_pred             hHHhhhcc----CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccC
Confidence            12222322    3688999999999999999   78888889999999999999995444332222221100    0236


Q ss_pred             ceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      .++++.|+||.+|.+|   ||+++++++++.+.......  +.+.+++.+.++.++++.  .+++++.+++++++++++.
T Consensus       222 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~  297 (376)
T 3ezs_A          222 NVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYL--GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLAR  297 (376)
T ss_dssp             TEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTTT--CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhhh--cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH
Confidence            7899999999998657   99999999999988766554  346788888888888874  3457788889999999999


Q ss_pred             HHHHhCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        397 NELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       397 ~~L~~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      +.|+  ++. .+..+.++++.++   +..++.+.|++++||.+.++..|.. ....+++|++++  .+++++++++++|+
T Consensus       298 ~~l~--~~~-~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~  369 (376)
T 3ezs_A          298 KIFK--NTL-IYPYSFYVYLPVQ---NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIE  369 (376)
T ss_dssp             HHST--TCC-CCSBSSEEEEECS---CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred             HHhc--CCC-CCCcceEEEEECC---CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHH
Confidence            9887  554 3344567778876   4678999997348999999987653 345789999998  38999999999999


Q ss_pred             HHHHH
Q psy16848        476 AVWKS  480 (514)
Q Consensus       476 ~~l~~  480 (514)
                      +++++
T Consensus       370 ~~l~~  374 (376)
T 3ezs_A          370 TYREN  374 (376)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            98754

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=4.4e-30  Score=262.23  Aligned_cols=334  Identities=20%  Similarity=0.184  Sum_probs=246.4

Q ss_pred             cCCceeeecccCCC---C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSVQY---K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++|+.++..   +  .+|++.+++.++++++.....     .+..+..+++++++++++|.+++++++||++|+.
T Consensus        33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~  107 (392)
T 3ruy_A           33 PEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR-----AFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVE  107 (392)
T ss_dssp             TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT-----TSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence            36788899965421   2  379999999999987544221     1345778999999999999888999999999999


Q ss_pred             cchhhcccc--------CCCceEEecCccchhhhhhh-hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         90 STLFTLGKM--------IPGLHYISDAGNHASMIQGI-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        90 ~~l~~l~~~--------~~gd~v~~~~~~h~~~~~~~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      .++..+...        .++|.|++..+.|++...+. ...+......                                
T Consensus       108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  155 (392)
T 3ruy_A          108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKR--------------------------------  155 (392)
T ss_dssp             HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTT--------------------------------
T ss_pred             HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcc--------------------------------
Confidence            999876542        23779999888886654333 2222111000                                


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                          .+......+..+
T Consensus       156 --------------------------------------------------------------------~~~~~~~~~~~~  167 (392)
T 3ruy_A          156 --------------------------------------------------------------------GFGPMLPGIIVI  167 (392)
T ss_dssp             --------------------------------------------------------------------TCCSCCSSEEEE
T ss_pred             --------------------------------------------------------------------ccCCCCCCCeee
Confidence                                                                                000001124455


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG  315 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~  315 (514)
                      +.+|.+.+++.++    +++++|++++++||+|.++|    +++|.++|++||+++|+||+|+ ++..|...  ..+..+
T Consensus       168 ~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~  241 (392)
T 3ruy_A          168 PYGDLEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF--ACDWDN  241 (392)
T ss_dssp             CTTCHHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS--GGGGGT
T ss_pred             CcccHHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch--hhhccC
Confidence            6667777777765    56899999999999999998    9999999999999999999997 44443321  112222


Q ss_pred             CccCceEEEcCCcccccC---CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~---~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                        ..+|++  |+||++++   .+|++++++++++.+.......  +.+.+++.++++.++++.+..   ++.++++++++
T Consensus       242 --~~~d~~--~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~  312 (392)
T 3ruy_A          242 --VTPDMY--ILGKALGGGVFPISCAAANRDILGVFEPGSHGS--TFGGNPLACAVSIAALEVLEE---EKLTERSLQLG  312 (392)
T ss_dssp             --CCCSEE--EECGGGGTTTSCCEEEEECHHHHTTCCTTSSCC--SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHH
T ss_pred             --CCCCEE--EEchhhhCChhhhEEEEECHHHHhhhccCCcCC--CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHH
Confidence              257887  77899976   2499999998888776655444  447889999999999987644   35888999999


Q ss_pred             HHHHHHHHhCCCc---cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        393 AYLRNELIQIGFP---VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       393 ~~l~~~L~~~g~~---~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      +++.+.|++++.+   ...+.+.++.+.++.  +..++.+.|. ++||.+.++.       .+++|++++..++++++++
T Consensus       313 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~--~~~~l~~~l~-~~gi~v~~~~-------~~~iRi~~~~~~~~~~i~~  382 (392)
T 3ruy_A          313 EKLVGQLKEIDNPMITEVRGKGLFIGIELNE--PARPYCEQLK-AAGLLCKETH-------ENVIRIAPPLVISEEDLEW  382 (392)
T ss_dssp             HHHHHHHTTCCCTTEEEEEEETTEEEEEESS--CSHHHHHHHH-TTTEECCCBT-------TTEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCceEEEeeeeEEEEEEcc--hHHHHHHHHH-HCCcEEecCC-------CCEEEEECCCCCCHHHHHH
Confidence            9999999987533   334567788887765  5678999996 9999998543       5699999998999999999


Q ss_pred             HHHHHHHHH
Q psy16848        470 FVTDLLAVW  478 (514)
Q Consensus       470 ~~~~l~~~l  478 (514)
                      ++++|++++
T Consensus       383 ~~~~l~~~l  391 (392)
T 3ruy_A          383 AFQKIKAVL  391 (392)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=1.6e-29  Score=258.08  Aligned_cols=336  Identities=15%  Similarity=0.147  Sum_probs=241.2

Q ss_pred             CCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~   89 (514)
                      +|+.++||.++.+.  .+|.+.+++.++++.....   +....+..++.+++.+.+.+.+|.    +..++++||++|+.
T Consensus        39 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~---y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~  115 (389)
T 1o4s_A           39 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK---YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF  115 (389)
T ss_dssp             TTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCC---CCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCC---CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence            57788999766542  3688999999988652211   111223445555555555544453    35677778889999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.+.|.+....++..|.+++.++.+..+                                   
T Consensus       116 ~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-----------------------------------  158 (389)
T 1o4s_A          116 NAFMALLD--PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSK-----------------------------------  158 (389)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGG-----------------------------------
T ss_pred             HHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCcc-----------------------------------
Confidence            99988865  99999999999999888777777766655431000                                   


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                               +.                                             ..|.+.++
T Consensus       159 -------------------------~~---------------------------------------------~~d~~~l~  168 (389)
T 1o4s_A          159 -------------------------NF---------------------------------------------QPSLEEVE  168 (389)
T ss_dssp             -------------------------TT---------------------------------------------CCCHHHHH
T ss_pred             -------------------------CC---------------------------------------------CCCHHHHH
Confidence                                     00                                             00333333


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +.+    +++++++++++++||+|.++|   +++|.++|+++|+++|+||+|+.+..+....++..... ..+.|++++|
T Consensus       169 ~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~~~~i~~~s  243 (389)
T 1o4s_A          169 GLL----VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE-GFDRIVYING  243 (389)
T ss_dssp             HTC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS-SSTTEEEEEE
T ss_pred             Hhc----ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC-CCCcEEEEee
Confidence            333    346889999999999999998   89999999999999999999996544322212222221 1368999999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      +||++|.+|   ||+++++++++.+.......  +.+.++..+.++.++++.    ..++.+++++++++++.+.|++.|
T Consensus       244 ~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~l~~~L~~~g  317 (389)
T 1o4s_A          244 FSKSHSMTGWRVGYLISSEKVATAVSKIQSHT--TSCINTVAQYAALKALEV----DNSYMVQTFKERKNFVVERLKKMG  317 (389)
T ss_dssp             STTTTTCGGGCCEEEECCHHHHHHHHHHHHHH--TCSCCHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhcCCcccceEEEEeCHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998656   99999999988887655443  335677777777666642    256788999999999999999988


Q ss_pred             CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       404 ~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +++..+.++ ++++.++  .+..++.+.|++++||.+.++..+..   ++++|++++  .+++++++++++|+++++
T Consensus       318 ~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~Ris~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          318 VKFVEPEGAFYLFFKVR--GDDVKFCERLLEEKKVALVPGSAFLK---PGFVRLSFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             CCCCCCSBSSEEEEECS--SCHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             CeeecCCcceEEEEeCC--CCHHHHHHHHHHHCCEEEeCchhcCC---CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            877666544 5566776  34678888885588999999876442   359999998  489999999999998764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.97  E-value=8e-30  Score=264.15  Aligned_cols=307  Identities=11%  Similarity=0.035  Sum_probs=224.3

Q ss_pred             HHHHHHHHhHcC----------CCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhh-cCCCCeeeccCC
Q psy16848         63 EKLEEDVAKLHQ----------KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIR-NSSAPKIIYRHN  131 (514)
Q Consensus        63 ~~~~~~la~~~~----------~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~-~~~~~~~~~~~~  131 (514)
                      .++++.++++++          .+++++++||++|+..++.++.+  +||.|+++.+.|.+...+++ ..|.+++.++.+
T Consensus        89 ~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~  166 (435)
T 3piu_A           89 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCT  166 (435)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTTCCEEEEEECC
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhcCCEEEEeeCC
Confidence            566666666665          45678888999999999999876  99999999999999998887 678887776653


Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHH
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  211 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~  211 (514)
                      +...                     |                                                      
T Consensus       167 ~~~~---------------------~------------------------------------------------------  171 (435)
T 3piu_A          167 SSNG---------------------F------------------------------------------------------  171 (435)
T ss_dssp             GGGT---------------------S------------------------------------------------------
T ss_pred             CccC---------------------C------------------------------------------------------
Confidence            1000                     0                                                      


Q ss_pred             HhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc--cCCCceEEEEecCCCCCccccC---HHHHHHHHH
Q psy16848        212 SGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP---LKELCEVSH  286 (514)
Q Consensus       212 ~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~  286 (514)
                                                    ..|.+.+++.+++.  ...++++|++++|+||||.+++   +++|+++|+
T Consensus       172 ------------------------------~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~  221 (435)
T 3piu_A          172 ------------------------------QITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVE  221 (435)
T ss_dssp             ------------------------------CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             ------------------------------cCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence                                          01445555555442  1235789999999999999998   588999999


Q ss_pred             HcCCEEEEeccccccccCC-CCCCccccCC---Cc-----cCceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcC
Q psy16848        287 QHGALTFVDEVHAVGLYGE-HGAGIGERDG---QL-----HNMDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAA  353 (514)
Q Consensus       287 ~~gv~li~Dea~~~g~~g~-~~~~~~~~~~---~~-----~~~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~  353 (514)
                      +||+++|+||+|+.+.++. ...++.....   .+     .+.+++++|+||.+|.+|   |++++ ++.+.+.+.....
T Consensus       222 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~  301 (435)
T 3piu_A          222 DKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS  301 (435)
T ss_dssp             HHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG
T ss_pred             HcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh
Confidence            9999999999999544332 2211111100   00     355689999999998657   99988 5667777765443


Q ss_pred             ceEeccCCcHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-cEEEEEeCCCc------cH
Q psy16848        354 GFIFTTSLPPTVLAGAREAIRILS--SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS-HIIPIKIGNPA------LN  424 (514)
Q Consensus       354 ~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~i~l~~~~------~~  424 (514)
                      .+    ..+++.+.++.+.++...  .+.+++.+++++++++++.+.|++.|+++..+.+ .++++.++...      ..
T Consensus       302 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~  377 (435)
T 3piu_A          302 FG----LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAE  377 (435)
T ss_dssp             GS----CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHH
T ss_pred             cC----CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhH
Confidence            32    456777777777665321  3355678889999999999999998888777766 57788876532      45


Q ss_pred             HHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        425 TKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       425 ~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .++.+.|++++||.+.++..+. +.+++++|++++.. +++++++++++|+++++++.
T Consensus       378 ~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          378 MELWKKIVYEVHLNISPGSSCH-CTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             HHHHHHHHHTSCEECEEGGGGT-CSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCEEEeCCcccC-CCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence            6888888745599999988654 34578999999744 99999999999999988753

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.97  E-value=1.4e-29  Score=259.86  Aligned_cols=345  Identities=14%  Similarity=0.098  Sum_probs=247.6

Q ss_pred             hhcCCceeeecccCCC-----CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEec
Q psy16848         13 VHKSNRVTCRLSSVQY-----KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTS   83 (514)
Q Consensus        13 ~~~~g~~~~d~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~s   83 (514)
                      ...+|+.++||..+..     ..+|++.+++.+++.....   .+....|..++.+++.+.+.+.+|    .+.+++++|
T Consensus        33 ~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g  109 (406)
T 1xi9_A           33 LEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHN---YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA  109 (406)
T ss_dssp             HHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred             HHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCC---CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence            3346778899976655     3468999999998875211   111122334555555555555433    245677778


Q ss_pred             cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         84 CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        84 Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      |++|+..++.++..  +||.|+++.++|.+...+++..|.+++.++.+..+                             
T Consensus       110 ~~~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-----------------------------  158 (406)
T 1xi9_A          110 VTEALQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE-----------------------------  158 (406)
T ss_dssp             HHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGG-----------------------------
T ss_pred             hHHHHHHHHHHhCC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCc-----------------------------
Confidence            89999999988865  99999999999999888777777766544321000                             


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                     +.                                             ..
T Consensus       159 -------------------------------~~---------------------------------------------~~  162 (406)
T 1xi9_A          159 -------------------------------DW---------------------------------------------QP  162 (406)
T ss_dssp             -------------------------------TS---------------------------------------------EE
T ss_pred             -------------------------------CC---------------------------------------------cC
Confidence                                           00                                             00


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      |.+.+++.++    +++++|++++++||||.+++   +++|.++|++||+++|+||+|+.+..+....++....   .+.
T Consensus       163 d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~---~~~  235 (406)
T 1xi9_A          163 DIDDIRKKIT----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT---KDV  235 (406)
T ss_dssp             CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC---SSS
T ss_pred             CHHHHHHhhC----cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC---CCc
Confidence            3444444443    35889999999999999988   8999999999999999999999654432222222221   356


Q ss_pred             -eEEEcCCcccccCCC---eEEE--ecH----HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        321 -DIISGTLGKAFGNIG---GYIV--GTK----NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       321 -di~~~S~sK~lg~~G---G~l~--~~~----~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                       |++++|+||+++.+|   |+++  +++    ++++.+.......   .+.++..+.++.++++.. .+.++++++++++
T Consensus       236 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~  311 (406)
T 1xi9_A          236 PVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR---LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKE  311 (406)
T ss_dssp             CEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT---CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHH
T ss_pred             eEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence             899999999998656   9988  888    8888887654332   256777788888888643 3346788899999


Q ss_pred             HHHHHHHHHHhC-CCccccCCCc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        391 IVAYLRNELIQI-GFPVEHTPSH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       391 ~~~~l~~~L~~~-g~~~~~~~~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      +++++.+.|++. ++.+..+.++ ++++.++.  ..+..++.+.|++++||.+.++..+.. .+.+++|++++  +++++
T Consensus       312 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~~lRis~~--~~~~~  388 (406)
T 1xi9_A          312 RRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFL--PPIEI  388 (406)
T ss_dssp             HHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG-GGTTBEEEECC--SCHHH
T ss_pred             HHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC-CCCCEEEEEec--CCHHH
Confidence            999999999988 7776666555 44456664  345778888885588999999876442 33579999998  88999


Q ss_pred             HHHHHHHHHHHHHHc
Q psy16848        467 IDKFVTDLLAVWKSL  481 (514)
Q Consensus       467 id~~~~~l~~~l~~~  481 (514)
                      +++++++|+++++++
T Consensus       389 i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          389 LEEAMDRFEKFMKER  403 (406)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998765

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=2.3e-29  Score=258.57  Aligned_cols=342  Identities=15%  Similarity=0.108  Sum_probs=245.7

Q ss_pred             hcCCceeeecccCCCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccc
Q psy16848         14 HKSNRVTCRLSSVQYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVA   87 (514)
Q Consensus        14 ~~~g~~~~d~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a   87 (514)
                      ..+|+.++||.++.+.  .+|.+.+++ ++++....   .+....+..++.+++.+.+.+.+|    .+.+++++||++|
T Consensus        39 ~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~---~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a  114 (409)
T 2gb3_A           39 KKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVV---YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEA  114 (409)
T ss_dssp             HHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSC---CCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred             HhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHH
Confidence            3467889999776653  367899988 87754111   111122334444444444444333    2567778889999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.++..  +||.|+++.+.|.+...+++..|.+++.++.++.                                  
T Consensus       115 ~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~----------------------------------  158 (409)
T 2gb3_A          115 ILFSFAVIAN--PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRME----------------------------------  158 (409)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGG----------------------------------
T ss_pred             HHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCC----------------------------------
Confidence            9999988865  9999999999999998887777777665543210                                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                 +++..
T Consensus       159 ---------------------------------------------------------------------------~~~~~  163 (409)
T 2gb3_A          159 ---------------------------------------------------------------------------EGFAI  163 (409)
T ss_dssp             ---------------------------------------------------------------------------GTSCC
T ss_pred             ---------------------------------------------------------------------------CCCcc
Confidence                                                                                       01111


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                       .+.+++..+++++++++++++||+|.++|   +++|.++|+++|+++|+||+|+.+..+....++  ..+ ..+.|+++
T Consensus       164 -~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~-~~~~~i~~  239 (409)
T 2gb3_A          164 -PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSI-ESDKVVVI  239 (409)
T ss_dssp             -CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGS-CCTTEEEE
T ss_pred             -HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--ccc-CCCCEEEE
Confidence             12233333446899999999999999987   899999999999999999999965443222122  111 13579999


Q ss_pred             cCCcccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        325 GTLGKAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      +|+||++|.+|   |++++++ ++++.+......+  + +.++..+.++.++|+.. ..++++++++++++++++.+.|+
T Consensus       240 ~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~--~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~  315 (409)
T 2gb3_A          240 DSVSKKFSACGARVGCLITRNEELISHAMKLAQGR--L-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLE  315 (409)
T ss_dssp             EESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHS--C-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhccCCccceEEEEEECcHHHHHHHHHHHhcc--C-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998656   9999988 8988887655443  3 66788888888888542 34567788999999999999999


Q ss_pred             hCCCcc-ccCCCc-EEEEEeCCCccHHHHHHHHHHhC------CeEEecccCCCC--CCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        401 QIGFPV-EHTPSH-IIPIKIGNPALNTKICDMLLKEK------GHYVQPINYPTV--PVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       401 ~~g~~~-~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~------GI~v~~~~~~~~--~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      +.|+.+ ..+.++ ++++.++ ..+..++.+.|+ ++      ||.+.++..+..  ..+.+++|++++  +++++++++
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~-~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~  391 (409)
T 2gb3_A          316 EHGLKRFTKPSGAFYITAELP-VEDAEEFARWML-TDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRA  391 (409)
T ss_dssp             HTTCCCBCCCSBSSEEEEECS-SSCHHHHHHHHH-HSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHH
T ss_pred             HcCceeeeCCCeeEEEEEEeC-CCCHHHHHHHHH-hccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHH
Confidence            888877 555544 5566776 345788999996 55      999999875443  134679999998  799999999


Q ss_pred             HHHHHHHHHHcC
Q psy16848        471 VTDLLAVWKSLD  482 (514)
Q Consensus       471 ~~~l~~~l~~~~  482 (514)
                      +++|+++++++.
T Consensus       392 ~~~l~~~l~~~~  403 (409)
T 2gb3_A          392 IDVLMEGLKMFC  403 (409)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988763

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.97  E-value=1.8e-29  Score=260.29  Aligned_cols=357  Identities=15%  Similarity=0.109  Sum_probs=251.6

Q ss_pred             CceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccccc
Q psy16848         17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVAND   89 (514)
Q Consensus        17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~   89 (514)
                      +..++||+.+.  +..+|.+.+++.+++.+.. ....+....|..++.+++++++.+.+|.     +.+++++||++++.
T Consensus        27 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~  105 (422)
T 3fvs_A           27 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF  105 (422)
T ss_dssp             TSCCEECCCSSCSSCCCHHHHHHHHHHHHSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred             cCCceEeCCCCCCCCCCHHHHHHHHHHHhCCC-ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence            45678886544  3357899999999988621 0111222234456666666666666553     35677778889999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.+.|.+....++..|.+++.++.....                                   
T Consensus       106 ~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------------------  148 (422)
T 3fvs_A          106 TAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGP-----------------------------------  148 (422)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCC-----------------------------------
T ss_pred             HHHHHHcC--CCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccc-----------------------------------
Confidence            99988866  99999999999999888888888777655431000                                   


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                              ...|..                                        ...+++..+.
T Consensus       149 ------------------------~~~G~~----------------------------------------~~~~~~~~d~  164 (422)
T 3fvs_A          149 ------------------------IQNGEL----------------------------------------GSSSNWQLDP  164 (422)
T ss_dssp             ------------------------CCSSSC----------------------------------------CBGGGSBCCH
T ss_pred             ------------------------cccccc----------------------------------------ccccCCCCCH
Confidence                                    000000                                        0000111122


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+++..+++++++++++++||||.+++   +++|.++|++||+++|+||+|+.+.. +....++..... ..+.++++.
T Consensus       165 ~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~  243 (422)
T 3fvs_A          165 MELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG-MWERTLTIG  243 (422)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-TGGGEEEEE
T ss_pred             HHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc-ccCcEEEEe
Confidence            3344444457899999999999999996   89999999999999999999995433 322222222221 236789999


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHH
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL------SSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~~l~  396 (514)
                      |+||.+|.+|   ||+++++++++.+.......  +.+.++..+.++.++++..      ...++++.+++++++++++.
T Consensus       244 S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  321 (422)
T 3fvs_A          244 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNS--VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMI  321 (422)
T ss_dssp             EHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhccCCccceEEEEEeCHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            9999998657   99999999998887655433  3367888888888888741      24567889999999999999


Q ss_pred             HHHHhCCCccccCCC-cEEEEEeCCCc---c----------HHHHHHHHHHhCCeEEecccCCCC----CCCCcEEEEEe
Q psy16848        397 NELIQIGFPVEHTPS-HIIPIKIGNPA---L----------NTKICDMLLKEKGHYVQPINYPTV----PVGEEKIRLAP  458 (514)
Q Consensus       397 ~~L~~~g~~~~~~~~-~~~~i~l~~~~---~----------~~~~~~~Ll~~~GI~v~~~~~~~~----~~~~~~iRl~~  458 (514)
                      +.|++.|+.+..+.+ .++++.++...   .          ..+++..+++++||.+.++..|..    +.+.+++|+++
T Consensus       322 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~  401 (422)
T 3fvs_A          322 RSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF  401 (422)
T ss_dssp             HHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC
T ss_pred             HHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEe
Confidence            999999888665554 46666654210   0          457888877678999999886543    24578999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +.  +++++++++++|++++++
T Consensus       402 ~~--~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          402 VK--DEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             CC--CHHHHHHHHHHHHHHHHC
T ss_pred             cC--CHHHHHHHHHHHHHHHhh
Confidence            84  999999999999998865

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=263.72  Aligned_cols=354  Identities=16%  Similarity=0.137  Sum_probs=247.6

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~   89 (514)
                      .+..++||..+.  +..+|.+.+++.++++..+.  ..+....|..++.+++.+++.+.+|.    +.++++++|++|+.
T Consensus        55 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~  132 (447)
T 3b46_A           55 QGRELINLGQGFFSYSPPQFAIKEAQKALDIPMV--NQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGIL  132 (447)
T ss_dssp             TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGG--GSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHH
T ss_pred             cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCC--CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            466789996543  33478999999998875221  11222234556666666666655553    34666777789999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.+.|.+....++..|.+++.++....+.                                  
T Consensus       133 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~----------------------------------  176 (447)
T 3b46_A          133 SCLMGLLN--AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKE----------------------------------  176 (447)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGG----------------------------------
T ss_pred             HHHHHHcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccc----------------------------------
Confidence            99988866  999999999999999888888887766543210000                                  


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                         |..+..                                              ...++..+.
T Consensus       177 -------------------~~~~~~----------------------------------------------~~~~~~~d~  191 (447)
T 3b46_A          177 -------------------LDQRNT----------------------------------------------RGEEWTIDF  191 (447)
T ss_dssp             -------------------GGTSCB----------------------------------------------CSTTSEECH
T ss_pred             -------------------cccccc----------------------------------------------cccCcccCH
Confidence                               000000                                              000111122


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +.+++..++++++|++++++||||.+++   +++|.++|++||+++|+||+|+.+.++....++.....-..+.+++++|
T Consensus       192 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S  271 (447)
T 3b46_A          192 EQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGS  271 (447)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEE
T ss_pred             HHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEec
Confidence            3333333467899999999999999987   8999999999999999999999544332222222220002367999999


Q ss_pred             CcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        327 LGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +||+++.+|   ||+++ ++++++.+.......  +.+.+++.+.++.++|+... ..++++++++++++++++.+.|++
T Consensus       272 ~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  349 (447)
T 3b46_A          272 AGKSFAATGWRIGWVLSLNAELLSYAAKAHTRI--CFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE  349 (447)
T ss_dssp             HHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhcCCcchhhEEEEeCCHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998667   99999 999998887654333  33567888888888887642 345788899999999999999998


Q ss_pred             CCCccccCC-CcEEEEEeCCC---------------ccHHHHHHHHHHhCCeEEecccCCCCCC----CCcEEEEEeCCC
Q psy16848        402 IGFPVEHTP-SHIIPIKIGNP---------------ALNTKICDMLLKEKGHYVQPINYPTVPV----GEEKIRLAPTPF  461 (514)
Q Consensus       402 ~g~~~~~~~-~~~~~i~l~~~---------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----~~~~iRl~~~~~  461 (514)
                      +|+++..+. +.++++.++..               .+..++++.|++++||.+.|+..+....    +.+++|++++  
T Consensus       350 ~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--  427 (447)
T 3b46_A          350 LGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--  427 (447)
T ss_dssp             HTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--
T ss_pred             CCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--
Confidence            888876665 44667777642               3456888888657899999987544321    2679999998  


Q ss_pred             CCHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLA  476 (514)
Q Consensus       462 ~t~e~id~~~~~l~~  476 (514)
                      .+++++++++++|++
T Consensus       428 ~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          428 KDDAYLENAVERLKL  442 (447)
T ss_dssp             SCHHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHHH
Confidence            489999999999876

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.97  E-value=1.8e-29  Score=263.84  Aligned_cols=345  Identities=13%  Similarity=0.089  Sum_probs=242.8

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a   87 (514)
                      .+|+.|+||.++   ..++  ||+|++++.+++++..+..+   ...+..+...+++++++++++  .++++|++||++|
T Consensus        52 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA  128 (472)
T 3hmu_A           52 SEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNT---FFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA  128 (472)
T ss_dssp             TTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCS---SSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred             CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Confidence            377888999654   4455  79999999999998653222   222346788999999999984  5678889999999


Q ss_pred             cccchhhcccc-------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         88 NDSTLFTLGKM-------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        88 ~~~~l~~l~~~-------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      +..+++.+...       ++...|..++.+|.....+....+.....                                 
T Consensus       129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~---------------------------------  175 (472)
T 3hmu_A          129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMH---------------------------------  175 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHH---------------------------------
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhc---------------------------------
Confidence            99999877531       12334445555565555444443321100                                 


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                         ..+. ....+..+
T Consensus       176 -------------------------------------------------------------------~~~~-~~~~~~~v  187 (472)
T 3hmu_A          176 -------------------------------------------------------------------AQSG-LIPDVHHI  187 (472)
T ss_dssp             -------------------------------------------------------------------HTTC-CCSSEEEE
T ss_pred             -------------------------------------------------------------------cccC-CCCCcEEe
Confidence                                                                               0000 00011111


Q ss_pred             c--C----C---C--------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc
Q psy16848        241 R--H----N---D--------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       241 ~--~----~---d--------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~  299 (514)
                      +  .    +   +        .+.+++.+++...+++++|++++++|++|.+.+    +++|+++|++||++||+||+|+
T Consensus       188 ~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~  267 (472)
T 3hmu_A          188 NQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC  267 (472)
T ss_dssp             CCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            1  1    1   1        566777776544456899999999999999887    9999999999999999999999


Q ss_pred             -ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH
Q psy16848        300 -VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI  375 (514)
Q Consensus       300 -~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~  375 (514)
                       +|..|..+  ..+..+.  .+|++  +|+|++++.|   |++++++++++.+.........+++.+++.++++.++|+.
T Consensus       268 gfgr~G~~~--a~~~~~v--~pdi~--t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~  341 (472)
T 3hmu_A          268 GFGRTGNWF--GTQTMGI--RPHIM--TIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRI  341 (472)
T ss_dssp             TTTTTSSSC--HHHHHTC--CCSEE--EECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred             CCcccCccc--hhHHhCC--CCcee--eechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHH
Confidence             66655322  1233343  68888  7889998744   9999999999988422112223567899999999999998


Q ss_pred             hhhchHHHHHHHHH-HHHHHHHHHHHhC-CCc---cccCCCcEEEEEeCCC------------ccHHHHHHHHHHhCCeE
Q psy16848        376 LSSQEGVELRAKHQ-DIVAYLRNELIQI-GFP---VEHTPSHIIPIKIGNP------------ALNTKICDMLLKEKGHY  438 (514)
Q Consensus       376 ~~~~~~~~~~~~~~-~~~~~l~~~L~~~-g~~---~~~~~~~~~~i~l~~~------------~~~~~~~~~Ll~~~GI~  438 (514)
                      +.++.   +.++++ ++.+++++.|+++ .++   .+.+.+.++.+.+...            ....++++.|+ ++||.
T Consensus       342 ~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~  417 (472)
T 3hmu_A          342 LEEEN---ILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCF-ANNLI  417 (472)
T ss_dssp             HHHTT---HHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHH-HTTBC
T ss_pred             HHHhH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHH-HCCcE
Confidence            75444   677788 8888888888765 222   3345677888877532            11567888886 89999


Q ss_pred             EecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       439 v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.++.        +++|++++..+|++++++++++|+++++++
T Consensus       418 v~~~g--------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~  452 (472)
T 3hmu_A          418 MRHVG--------DRMIISPPLVITPAEIDEMFVRIRKSLDEA  452 (472)
T ss_dssp             CEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            98642        689999999999999999999999988765

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.97  E-value=1.6e-29  Score=257.52  Aligned_cols=338  Identities=16%  Similarity=0.133  Sum_probs=245.2

Q ss_pred             ceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----C-cEEEEecccccccc
Q psy16848         18 RVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----E-AGLVFTSCYVANDS   90 (514)
Q Consensus        18 ~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~-~~i~~~sGt~a~~~   90 (514)
                      ..++||..+.+  ..+|.+.+++.++++....   .+....|..++.+++.+.+.+.+|.    + ..+++++|++|+..
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~  106 (386)
T 1u08_A           30 HQAINLSQGFPDFDGPRYLQERLAHHVAQGAN---QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA  106 (386)
T ss_dssp             TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHhhcc---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence            35789876554  2478999999999875211   1112224456666666666665563    3 66777778889999


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|.+....++..|.+++.++....                                     
T Consensus       107 ~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-------------------------------------  147 (386)
T 1u08_A          107 AITALVR--NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-------------------------------------  147 (386)
T ss_dssp             HHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-------------------------------------
T ss_pred             HHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-------------------------------------
Confidence            9988865  9999999999999988777777776665543100                                     


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                              +.                                             ..|.+.+++
T Consensus       148 ------------------------~~---------------------------------------------~~d~~~l~~  158 (386)
T 1u08_A          148 ------------------------HF---------------------------------------------RVDWQEFAA  158 (386)
T ss_dssp             ------------------------TC---------------------------------------------CCCHHHHHH
T ss_pred             ------------------------cC---------------------------------------------cCCHHHHHH
Confidence                                    00                                             014444544


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+    .++++++++++++||||.++|   +++|.++|++||+++|+||+|+.+.+ |....++..... ..+.|++++|
T Consensus       159 ~l----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~i~~~s  233 (386)
T 1u08_A          159 LL----SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ-LRERAVAVSS  233 (386)
T ss_dssp             HC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH-HHTTEEEEEE
T ss_pred             hh----cccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC-ccCcEEEEec
Confidence            44    346899999999999999998   79999999999999999999995443 322212221110 2367999999


Q ss_pred             CcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        327 LGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      +||++|.+|   ||+++++++++.+.......  +.+.+.+.+.++.++++.. ..++++.+++++++++++.+.|++.|
T Consensus       234 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g  310 (386)
T 1u08_A          234 FGKTYHMTGWKVGYCVAPAPISAEIRKVHQYL--TFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESR  310 (386)
T ss_dssp             HHHHTTCGGGCCEEEECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSS
T ss_pred             chhhcCCcccceEEEEcCHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999998657   99999999988887654333  3356777888888888765 45677889999999999999999888


Q ss_pred             CccccCCC-cEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPS-HIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       404 ~~~~~~~~-~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.+..+.+ .++++.++..  .+..++.+.|++++||.+.++..+.. +.+.+++|++++  .+++++++++++|++
T Consensus       311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          311 LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence            87766654 5778888753  35778888886578999998874332 235679999998  489999999998864

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=1.2e-29  Score=256.08  Aligned_cols=324  Identities=15%  Similarity=0.095  Sum_probs=245.8

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~   91 (514)
                      +|+.++||..+..  ..+|++.+++.+++...+....+    ++. ....++++++++++|.  +.+++++||++|+..+
T Consensus        24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~----y~~-~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~   98 (360)
T 3hdo_A           24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRI----YPS-ASSQKLREVAGELYGFDPSWIIMANGSDEVLNNL   98 (360)
T ss_dssp             CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGS----CCC-SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred             cccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhc----CCC-CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHH
Confidence            4567899976543  34789999999988763211111    111 1236899999999984  5677788888999999


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++.+  +||.|+++.+.|.+....++..|.+++.++.++                                       
T Consensus        99 ~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~---------------------------------------  137 (360)
T 3hdo_A           99 IRAFAA--EGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG---------------------------------------  137 (360)
T ss_dssp             HHHHCC--TTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT---------------------------------------
T ss_pred             HHHHhC--CCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC---------------------------------------
Confidence            988866  999999999999998888877777776654421                                       


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                              ++..  +.
T Consensus       138 ------------------------------------------------------------------------~~~~--~~  143 (360)
T 3hdo_A          138 ------------------------------------------------------------------------DFRI--AG  143 (360)
T ss_dssp             ------------------------------------------------------------------------TSSB--TT
T ss_pred             ------------------------------------------------------------------------CCCH--HH
Confidence                                                                                    0111  11


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +.+..  +++++++++++||+|.++|+++|.++|+++|+++|+||+|+.. .+.   +...... ..+.+++++|+||.+
T Consensus       144 l~~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~-~~~---~~~~~~~-~~~~~i~~~s~sK~~  216 (360)
T 3hdo_A          144 FPERY--EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEF-AES---NALELVR-RHENVVVTRTLSKSY  216 (360)
T ss_dssp             CCSSB--CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGG-SSC---CCTHHHH-HCSSEEEEEESTTTT
T ss_pred             HHhhc--CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhh-CCc---chhHHhc-cCCCEEEEecchHhh
Confidence            11111  2568999999999999999999999999999999999999942 222   1111111 236679999999999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH  408 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  408 (514)
                      |.+|   ||+++++++++.+......+    +.++..++++.++++.  .+++++.+++++++++++.+.|++.++.+..
T Consensus       217 g~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  290 (360)
T 3hdo_A          217 SLAGMRIGLAIARPEVIAALDKIRDHY----NLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP  290 (360)
T ss_dssp             SCTTSCCEEEECCHHHHHHHHHHSCSC----CSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred             cCCccceeeEeeCHHHHHHHHHhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC
Confidence            8656   99999999999988766443    6788899998888884  3467788999999999999999998888777


Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +.+.++++.++. .+..++.+.|. ++||.++++..   +..++++|++++   +++|+++++++|+++.+.
T Consensus       291 ~~~~~~~~~~~~-~~~~~l~~~l~-~~gi~v~~~~~---~~~~~~iRis~~---~~~e~~~l~~al~~~~~~  354 (360)
T 3hdo_A          291 SQGNYLFATPPD-RDGKRVYDGLY-ARKVLVRHFSD---PLLAHGMRISIG---TREEMEQTLAALKEIGEG  354 (360)
T ss_dssp             CSSSEEEEECTT-CCHHHHHHHHH-HTTEECBCCCS---TTTTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred             CCccEEEEECCC-CCHHHHHHHHH-HCCEEEEECCC---CCCCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence            778888887764 45788999985 89999987654   334679999998   899999999999987543

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.97  E-value=5.3e-30  Score=266.56  Aligned_cols=341  Identities=16%  Similarity=0.105  Sum_probs=240.5

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc----CC-CcEEEEecc-ccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH----QK-EAGLVFTSC-YVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~-~~~i~~~sG-t~a   87 (514)
                      +|..++|+..++.  ..+|.+.+++.+++..++...+.  ..|+......++++.+++++    +. +..+++++| +++
T Consensus        67 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~a  144 (449)
T 3qgu_A           67 PDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGY--SGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCD  144 (449)
T ss_dssp             TTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCC--CCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred             CCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCC--CCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHH
Confidence            4678999976532  24789999999999975432211  11222233567788888876    32 234555555 555


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCC----------eeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP----------KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  157 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~----------~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~  157 (514)
                      +..+ .++..  +||.|+++.+.|.+....++..|.+          ++.++.++.+                       
T Consensus       145 l~~~-~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~-----------------------  198 (449)
T 3qgu_A          145 IARI-QMMFG--SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDN-----------------------  198 (449)
T ss_dssp             HHHH-HHHHC--SSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGG-----------------------
T ss_pred             HHHH-HHHhC--CCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEeccccc-----------------------
Confidence            5554 66765  9999999999999999888888776          4433331100                       


Q ss_pred             cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848        158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK  237 (514)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~  237 (514)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (449)
T 3qgu_A          199 --------------------------------------------------------------------------------  198 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCcccc
Q psy16848        238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGER  313 (514)
Q Consensus       238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~  313 (514)
                            ++   ...+.+.  +++++|++++++||||.+++   +++|+++|++||+++|+||+|+.+..+. ...++...
T Consensus       199 ------~~---~~~~~~~--~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  267 (449)
T 3qgu_A          199 ------HF---FPDLSKA--KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEI  267 (449)
T ss_dssp             ------TT---CCCGGGC--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGS
T ss_pred             ------CC---cCChhHc--CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhc
Confidence                  00   0001111  45789999999999999998   7899999999999999999999544432 22122222


Q ss_pred             CCCccCceEEEcCCcccccCCC---eEEEecHHHHH--------HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHH
Q psy16848        314 DGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFID--------TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGV  382 (514)
Q Consensus       314 ~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  382 (514)
                      .. ..+.++++.||||++|.+|   ||+++++++++        .+.......  ..+.+++.+.++.++++....++++
T Consensus       268 ~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~  344 (449)
T 3qgu_A          268 PG-ADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTC--FNGASNIVQAGGLACLQPEGLKEMN  344 (449)
T ss_dssp             TT-GGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHS--CCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred             cC-CCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcc--cCCCCHHHHHHHHHHHhhcCHHHHH
Confidence            21 2467899999999999667   99999887764        233222221  2257888888888888753335677


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        383 ELRAKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      +++++++++++++.+.|++.|+.+..+. +.++++.++ ..+..++++.|++++||.+.++..|. +.+++++|+++.  
T Consensus       345 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~-~~~~~~iRis~~--  420 (449)
T 3qgu_A          345 AMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYG-PAGEGFVRASAF--  420 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECC--
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhC-CCCCCeEEEEec--
Confidence            8899999999999999999988877664 667888887 55678899999755699999988754 345789999975  


Q ss_pred             CCHHHHHHHHHHHHHHHHHcC
Q psy16848        462 HTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+++++++++++|++++++..
T Consensus       421 ~~~e~i~~~l~~l~~~~~~~~  441 (449)
T 3qgu_A          421 GSRENILEAVRRFKEAYGKRN  441 (449)
T ss_dssp             SCHHHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHHHHhcC
Confidence            489999999999999886643

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.97  E-value=1.4e-29  Score=262.67  Aligned_cols=347  Identities=17%  Similarity=0.111  Sum_probs=245.0

Q ss_pred             cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CC-CcEEEEecccc
Q psy16848         15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QK-EAGLVFTSCYV   86 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~-~~~i~~~sGt~   86 (514)
                      .+|+.++||.++.+   ++  ||++.+++.+++++... +   ....+..+...++++++++++  +. +++++++||++
T Consensus        40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~---~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggse  115 (439)
T 3dxv_A           40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAG-A---TILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSD  115 (439)
T ss_dssp             TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSC-S---CSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHH
T ss_pred             CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccC-c---cccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHH
Confidence            47888999998887   54  79999999999987532 1   123456788999999999998  55 57888999999


Q ss_pred             ccccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         87 ANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        87 a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      |+..++..+.. .++++.|+.++.+|.....++...+.....+..        .+      .|.   ..+          
T Consensus       116 a~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~--------~~------~~~---~~~----------  168 (439)
T 3dxv_A          116 ANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAA--------KA------DGL---ILL----------  168 (439)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC---------------------------CE---EEE----------
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhcc--------cc------CCC---CCC----------
Confidence            99999987422 236677777888888877776665543200000        00      000   000          


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC--
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN--  243 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~--  243 (514)
                                                                                             +..++.+  
T Consensus       169 -----------------------------------------------------------------------~~~~~~~~~  177 (439)
T 3dxv_A          169 -----------------------------------------------------------------------PYPDPYRPY  177 (439)
T ss_dssp             -----------------------------------------------------------------------CCCCSSSCB
T ss_pred             -----------------------------------------------------------------------cEEcCCCcc
Confidence                                                                                   0001111  


Q ss_pred             --------ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc
Q psy16848        244 --------DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI  310 (514)
Q Consensus       244 --------d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~  310 (514)
                              |++.+++.+++...+++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++..|...  .
T Consensus       178 ~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~--~  255 (439)
T 3dxv_A          178 RNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH--C  255 (439)
T ss_dssp             TTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS--G
T ss_pred             cccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh--H
Confidence                    4666777775333567899999999999999988    9999999999999999999998 43333211  1


Q ss_pred             cccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        311 GERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       311 ~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      .+..+.  .+|++  ||||++++ |   |++++++++++.+.......  +. .+++.++++.++++.+.++.   ..++
T Consensus       256 ~~~~~~--~~di~--s~sK~~~~-G~riG~~~~~~~~~~~~~~~~~~~--t~-~~~~~~~aa~aal~~~~~~~---~~~~  324 (439)
T 3dxv_A          256 FEHEGF--VPDIL--VLGKGLGG-GLPLSAVIAPAEILDCASAFAMQT--LH-GNPISAAAGLAVLETIDRDD---LPAM  324 (439)
T ss_dssp             GGGTTC--CCSEE--EECGGGGT-TSCCEEEEEEHHHHTSCSSSSCCT--TT-TCHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred             HHhcCC--CCCEE--EEcchhcC-CcceEEEEECHHHHhhhcCCCcCC--Cc-ccHHHHHHHHHHHHHHHhcC---HHHH
Confidence            233333  67888  99999986 6   99999999888776543333  55 78999999999998775433   5666


Q ss_pred             HHHHHHHHHHHHHhC----C-CccccCCCcEEEEEe--------CCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848        388 HQDIVAYLRNELIQI----G-FPVEHTPSHIIPIKI--------GNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI  454 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~i~l--------~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i  454 (514)
                      ++++.+++.+.|.++    . +....+.+.++++.+        ++.....++.+.|+ ++||.+.++..     ..+++
T Consensus       325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----~~~~i  398 (439)
T 3dxv_A          325 AERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAY-QLGLVVYYVGM-----NGNVL  398 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHH-HHTEECEEEST-----TSCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHH-HCCcEEeecCC-----CCCEE
Confidence            777777777666654    2 223345677887776        33344678889996 88999987642     24699


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        455 RLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       455 Rl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      |++++..++++++++++++|+++++++.
T Consensus       399 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~  426 (439)
T 3dxv_A          399 EFTPPLTITETDIHKALDLLDRAFSELS  426 (439)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            9999989999999999999999998764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.97  E-value=2.5e-29  Score=254.31  Aligned_cols=323  Identities=14%  Similarity=0.135  Sum_probs=245.3

Q ss_pred             ceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccccch
Q psy16848         18 RVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDSTL   92 (514)
Q Consensus        18 ~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~l   92 (514)
                      +.++||.++.  +..+|++.+++.+++......  +    ++. ....++++++++++|.   +..++++|||+++..++
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~--~----y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~  102 (367)
T 3euc_A           30 HGLVKLDAMENPYRLPPALRSELAARLGEVALN--R----YPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA  102 (367)
T ss_dssp             TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTT--C----SCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred             CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhh--c----CCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence            5689997654  334789999999998853211  1    111 2357899999999987   45677777888999998


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++.+  +||+|+++.++|.+....++..|.+++.++.+.                                        
T Consensus       103 ~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~----------------------------------------  140 (367)
T 3euc_A          103 LAAAR--PGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA----------------------------------------  140 (367)
T ss_dssp             HHTCC--TTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT----------------------------------------
T ss_pred             HHHcC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC----------------------------------------
Confidence            88866  999999999999988877777777666554310                                        


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                            ..                                             ..|.+.+++.+
T Consensus       141 ----------------------~~---------------------------------------------~~d~~~l~~~l  153 (367)
T 3euc_A          141 ----------------------DF---------------------------------------------TLDRGAMLAAM  153 (367)
T ss_dssp             ----------------------TS---------------------------------------------CCCHHHHHHHH
T ss_pred             ----------------------CC---------------------------------------------CCCHHHHHHHh
Confidence                                  00                                             11455566665


Q ss_pred             hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      .+.   +++++++++++||+|.+++   +++|.++|++|  |+++|+||+|+... +..   ...... ..+.+++++|+
T Consensus       154 ~~~---~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~-~~~---~~~~~~-~~~~~i~~~s~  225 (367)
T 3euc_A          154 AEH---QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA-QES---WMSRLT-DFGNLLVMRTV  225 (367)
T ss_dssp             HHH---CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS-SCC---SGGGGG-TCTTEEEEEEC
T ss_pred             hcc---CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc-ccc---hHHHHh-hCCCEEEEecc
Confidence            542   4789999999999999987   78888889999  99999999998432 111   111111 23567899999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      ||. +.+|   ||+++++++++.+......+    +.++..++++.++++.  .+++++.+++++++++++.+.|+++ +
T Consensus       226 sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g  298 (367)
T 3euc_A          226 SKL-GLAGIRLGYVAGDPQWLEQLDKVRPPY----NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGG  298 (367)
T ss_dssp             CCT-TSCSCCEEEEEECHHHHHHHGGGCCSS----CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             hhh-cccccCceeeeeCHHHHHHHHHhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999 6656   99999999999887765443    5788888888888875  3556788999999999999999998 8


Q ss_pred             CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        404 FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       404 ~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.+.++.+.++++.++   +..++.+.| .++||.++++..+. +...+++|++++   +++|+++++++|+++++
T Consensus       299 ~~~~~~~~~~~~~~~~---~~~~l~~~l-~~~gi~v~~~~~~~-~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          299 VTVFPSAANFLLARVP---DAAQTFDRL-LARKVLIKNVSKMH-PLLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             CEECCCSSSEEEEECS---CHHHHHHHH-HTTTEECEECGGGC-GGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             cEECCCCCeEEEEECC---CHHHHHHHH-HHCCeEEEECCccC-CCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            8876667778888887   477888888 49999999887643 334679999987   89999999999998753

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.97  E-value=1.3e-29  Score=263.95  Aligned_cols=345  Identities=14%  Similarity=0.081  Sum_probs=245.5

Q ss_pred             CCc--eeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccc
Q psy16848         16 SNR--VTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYV   86 (514)
Q Consensus        16 ~g~--~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~   86 (514)
                      +|+  .|+||.++   .+++  ||++.+++.+++++.....    ......+...+++++++++++  .++++|++||++
T Consensus        71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGse  146 (457)
T 3tfu_A           71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM----FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSV  146 (457)
T ss_dssp             TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC----SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHH
T ss_pred             CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHH
Confidence            788  89999764   5565  8999999999999854321    112245788999999999984  567888999999


Q ss_pred             ccccchhhccc-------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         87 ANDSTLFTLGK-------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        87 a~~~~l~~l~~-------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      |+..++..+..       .++...|..++.+|.....++...+..... ..                             
T Consensus       147 A~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~-~~-----------------------------  196 (457)
T 3tfu_A          147 SVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGM-HS-----------------------------  196 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-----------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccc-cc-----------------------------
Confidence            99999987653       122234455666666666555443211100 00                             


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                                                           .+.........
T Consensus       197 ---------------------------------------------------------------------~~~~~~~~~~~  207 (457)
T 3tfu_A          197 ---------------------------------------------------------------------LWTDVLAAQVF  207 (457)
T ss_dssp             --------------------------------------------------------------------------CCCCEE
T ss_pred             ---------------------------------------------------------------------cccCCCCCceE
Confidence                                                                                 00000011111


Q ss_pred             ec-------CCChhHHHHHHhhccCCCceEEEEec-CCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCC
Q psy16848        240 YR-------HNDVNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEH  306 (514)
Q Consensus       240 v~-------~~d~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~  306 (514)
                      ++       .+|.+.+++.+++. .+++++|++++ ++|++|.+.+    +++|+++|++||++||+||+|+ +|..|..
T Consensus       208 ~~~p~~~~~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~  286 (457)
T 3tfu_A          208 APQVPRDYDPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGAL  286 (457)
T ss_dssp             ECCCCSSCCHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             ecCCCcccCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccch
Confidence            11       13667777777653 24589999999 9999999887    8999999999999999999998 5554432


Q ss_pred             CCCccccCCCccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhc-C--ceEeccCCcHHHHHHHHHHHHHhhhch
Q psy16848        307 GAGIGERDGQLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYA-A--GFIFTTSLPPTVLAGAREAIRILSSQE  380 (514)
Q Consensus       307 ~~~~~~~~~~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~a~~~~l~~~~~~~  380 (514)
                      .  ..+..+.  .+|++  ||+|++++.   .|++++++++++.+.... .  ....+++.+++.++++.++|+.+.++.
T Consensus       287 ~--a~~~~~~--~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~  360 (457)
T 3tfu_A          287 F--AADHAGV--SPDIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQD  360 (457)
T ss_dssp             S--THHHHTC--CCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSC
T ss_pred             h--HhHhcCC--CceEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhH
Confidence            1  1223333  68888  999999762   289999999999885221 1  122355789999999999999876554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CC---ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        381 GVELRAKHQDIVAYLRNELIQI-GF---PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~L~~~-g~---~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                         ..++++++.+++++.|+++ .+   ..+.+.+.++.+.+++..+..++.+.|+ ++||.+.+.        .+++|+
T Consensus       361 ---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~-~~Gv~v~~~--------~~~lRi  428 (457)
T 3tfu_A          361 ---WRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATPAAL-DRGVWLRPF--------RNLVYA  428 (457)
T ss_dssp             ---HHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHHHHHHHHH-HTTEECCCB--------TTEEEE
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHHHHHHHHH-HCCeEEEec--------CCEEEE
Confidence               6778888888999888876 22   2334567788888876556788999996 889998752        258999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++..+|++|+++++++|++++++++
T Consensus       429 ~p~~~~t~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          429 MPPYICTPAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99989999999999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=1.2e-29  Score=262.03  Aligned_cols=349  Identities=15%  Similarity=0.084  Sum_probs=246.2

Q ss_pred             CceeeecccCC--CC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccc
Q psy16848         17 NRVTCRLSSVQ--YK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVA   87 (514)
Q Consensus        17 g~~~~d~~~~~--~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a   87 (514)
                      +..++||.++.  +.  .+|++.+++.++++..+.....+....|..++.+++.+.+.+.+|.     +..+++++|+++
T Consensus        42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~a  121 (425)
T 1vp4_A           42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA  121 (425)
T ss_dssp             STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred             CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHH
Confidence            45689996543  32  4578999999998763210011111223445555555555444373     345666667888


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.++..  +||.|+++.+.|.+....++..|.+++.++.++ +                                 
T Consensus       122 l~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~---------------------------------  165 (425)
T 1vp4_A          122 LDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYLANFVVVPLED-D---------------------------------  165 (425)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T---------------------------------
T ss_pred             HHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-C---------------------------------
Confidence            8888888865  999999999999999988888887776554310 0                                 


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                ..|.+.
T Consensus       166 --------------------------------------------------------------------------~~d~~~  171 (425)
T 1vp4_A          166 --------------------------------------------------------------------------GMDLNV  171 (425)
T ss_dssp             --------------------------------------------------------------------------EECHHH
T ss_pred             --------------------------------------------------------------------------CCCHHH
Confidence                                                                                      014455


Q ss_pred             HHHHHhhcc----CCCceEE-EEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCcc
Q psy16848        248 LTQVLENMD----VKIPKLV-AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLH  318 (514)
Q Consensus       248 l~~~l~~~~----~~~~~~v-v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~  318 (514)
                      +++.+++..    .+++++| ++++++||||.++|   +++|.++|++||+++|+||+|+.+.. +....++....  ..
T Consensus       172 l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~  249 (425)
T 1vp4_A          172 LERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG--GP  249 (425)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH--CT
T ss_pred             HHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC--CC
Confidence            555554310    1246787 58999999999998   68899999999999999999995443 22211221111  12


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~  394 (514)
                      +.+++++|+||+++ +|   ||+++++++++.+......+  +.+.+++.+.++.++|+.. ...++++.++++++++++
T Consensus       250 ~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (425)
T 1vp4_A          250 ERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSA--DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTV  326 (425)
T ss_dssp             TTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHH
T ss_pred             CCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhhhh--cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            56899999999999 57   99999999998887655444  3356888888888888753 134567788889999999


Q ss_pred             HHHHHHhC-----CCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHH
Q psy16848        395 LRNELIQI-----GFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       395 l~~~L~~~-----g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~i  467 (514)
                      +.+.|++.     ++.+..+. +.++++.++...+..++.+.|+ ++||.+.++..+... .+.+++|++++. .+++++
T Consensus       327 l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~e~i  404 (425)
T 1vp4_A          327 MLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKI  404 (425)
T ss_dssp             HHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHH-HHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHH
T ss_pred             HHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHH-HCCCEEECchhhcCCCCCCCeEEEEeCC-CCHHHH
Confidence            99999875     57665444 5578888875445678889996 679999998864432 246799999985 489999


Q ss_pred             HHHHHHHHHHHHHcC
Q psy16848        468 DKFVTDLLAVWKSLD  482 (514)
Q Consensus       468 d~~~~~l~~~l~~~~  482 (514)
                      ++++++|+++++++.
T Consensus       405 ~~~l~~l~~~l~~~~  419 (425)
T 1vp4_A          405 VEGIKRLREVVLEYG  419 (425)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987653

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.97  E-value=3.4e-29  Score=259.23  Aligned_cols=341  Identities=17%  Similarity=0.153  Sum_probs=239.3

Q ss_pred             cCCceeeecccC----CCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSV----QYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~----~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++||.++    .+. .+|++.+++.+++++....  +. .  ...+...++++++++++|.+++++++||++|+.
T Consensus        62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~--~~-~--~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~  136 (433)
T 1z7d_A           62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SR-A--FFSVPLGICERYLTNLLGYDKVLMMNTGAEANE  136 (433)
T ss_dssp             TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC--CT-T--SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCc--cC-C--cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHH
Confidence            367888998652    222 4799999999999875421  11 1  145778999999999999888999999999999


Q ss_pred             cchhhccc-------cCCC-ceEEecCccc-hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         90 STLFTLGK-------MIPG-LHYISDAGNH-ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        90 ~~l~~l~~-------~~~g-d~v~~~~~~h-~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      .++..+..       ..+| |.|++.++.| ..+..+++..+......                                
T Consensus       137 ~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~--------------------------------  184 (433)
T 1z7d_A          137 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS--------------------------------  184 (433)
T ss_dssp             HHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------------------------------
T ss_pred             HHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccc--------------------------------
Confidence            99887531       1256 7777666554 44444444333211000                                


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                          .+......+..+
T Consensus       185 --------------------------------------------------------------------~~~p~~~~v~~~  196 (433)
T 1z7d_A          185 --------------------------------------------------------------------NFGPFAPQFSKV  196 (433)
T ss_dssp             ---------------------------------------------------------------------------CEEEE
T ss_pred             --------------------------------------------------------------------cCCCCCCCeEEe
Confidence                                                                                000001245566


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCcccc----CHHHHHHHHHHcCCEEEEeccccccccCCCCCCcc-ccCC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG-ERDG  315 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~----~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~-~~~~  315 (514)
                      +.+|.+.+++.++   .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+ | +++.+..+. +..+
T Consensus       197 ~~~d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~g~~g~~~~~~~~~  271 (433)
T 1z7d_A          197 PYDDLEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYN  271 (433)
T ss_dssp             CTTCHHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGT
T ss_pred             CCCCHHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-C-CCcCCcchhhHhcC
Confidence            6678888888885   24688999999999999875    38999999999999999999998 3 233332221 2333


Q ss_pred             CccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      .  .+|++  ||+|++++.   +|++++++++++.+.......  +.+.+++.++++.++++.+.++   +..++++++.
T Consensus       272 ~--~~di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~  342 (433)
T 1z7d_A          272 V--KPDVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGS--TYGGNPLAASICVEALNVLINE---KLCENAEKLG  342 (433)
T ss_dssp             C--CCSEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred             C--CCCEE--EECccccCCCCCeEEEEECHHHHhhhccccccc--cCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Confidence            3  67888  899999863   499999998887765533333  4578899999999999987544   3677888889


Q ss_pred             HHHHHHHHhC--CCcc---ccCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        393 AYLRNELIQI--GFPV---EHTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       393 ~~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      +++.+.|+++  +++.   ..+.+.++++.++.. .+..++.+.|+ ++||.+.++       +.+++|++++..+|++|
T Consensus       343 ~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~-~~Gv~v~~~-------~~~~iRi~~~~~~t~e~  414 (433)
T 1z7d_A          343 GPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK-ENGLITRDV-------HDKTIRLTPPLCITKEQ  414 (433)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHH-HTTEECCEE-------TTTEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHH-HCCeEEecC-------CCCEEEEECCcCCCHHH
Confidence            9999888875  5543   234677888888753 35678999996 899999764       25689999998899999


Q ss_pred             HHHHHHHHHHHHHHcC
Q psy16848        467 IDKFVTDLLAVWKSLD  482 (514)
Q Consensus       467 id~~~~~l~~~l~~~~  482 (514)
                      +++++++|+++++++.
T Consensus       415 i~~~l~~l~~~l~~~~  430 (433)
T 1z7d_A          415 LDECTEIIVKTVKFFD  430 (433)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987753

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.97  E-value=6.4e-29  Score=254.17  Aligned_cols=345  Identities=13%  Similarity=0.060  Sum_probs=245.0

Q ss_pred             eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccch
Q psy16848         19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l   92 (514)
                      .++||..++.  ..+|.+.+++.++++.....++     .+..++.+++.+.+.+.+|    .+..+++++|++|+..++
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~  106 (399)
T 1c7n_A           32 EVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT-----GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV  106 (399)
T ss_dssp             TCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB-----CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred             CceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCC-----CCcHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHH
Confidence            5677754432  2378999999999875211111     1134455555555555455    345666677788999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++..  +||.|+++.+.|.+...+++..|.+++.++..+.                    +|.|               
T Consensus       107 ~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~--------------------~g~~---------------  149 (399)
T 1c7n_A          107 REFTK--PGDGVIIITPVYYPFFMAIKNQERKIIECELLEK--------------------DGYY---------------  149 (399)
T ss_dssp             HHHCC--TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEE--------------------TTEE---------------
T ss_pred             HHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccC--------------------CCCE---------------
Confidence            88865  9999999999999999888888877765543100                    0000               


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                           ..|.+.+++.+
T Consensus       150 ---------------------------------------------------------------------~~d~~~l~~~l  160 (399)
T 1c7n_A          150 ---------------------------------------------------------------------TIDFQKLEKLS  160 (399)
T ss_dssp             ---------------------------------------------------------------------ECCHHHHHHHH
T ss_pred             ---------------------------------------------------------------------EEcHHHHHHHh
Confidence                                                                                 01455666665


Q ss_pred             hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      ++   +++++|++++++||||.++|   +++|.++|++||+++|+||+|+.+.. +....++........+.+++++|+|
T Consensus       161 ~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s  237 (399)
T 1c7n_A          161 KD---KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPS  237 (399)
T ss_dssp             TC---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSH
T ss_pred             cc---CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeCh
Confidence            42   35789999999999999999   99999999999999999999995433 2222122211100035679999999


Q ss_pred             ccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-
Q psy16848        329 KAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I-  402 (514)
Q Consensus       329 K~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-  402 (514)
                      |++|.+|   |+++++ +++++.+......+.+ .+.+++.+.++.++++.. .+++++.+++++++++++.+.|++ + 
T Consensus       238 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~  315 (399)
T 1c7n_A          238 KTFNIAGMGMSNIIIKNPDIRERFTKSRDATSG-MPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHP  315 (399)
T ss_dssp             HHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhccccchheEEEEECCHHHHHHHHHHHhhccc-CCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9998656   999986 6788888765544311 146788888888888753 456778889999999999999998 6 


Q ss_pred             CCccccCCCcEE-EEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTPSHII-PIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       403 g~~~~~~~~~~~-~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++.+..+.++++ ++.++.. .+..++.+.|++++||.+.++..+. +.+.+++|++++.  +++++++++++|++++++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          316 EIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFG-DGGIGFERINLAA--PSSVIQESLERLNKALKD  392 (399)
T ss_dssp             TSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             CCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccC-CCCCCeEEEEecc--CHHHHHHHHHHHHHHHHH
Confidence            787766666644 5787642 3577899998547899999987643 2346799999984  488999999999999987


Q ss_pred             cC
Q psy16848        481 LD  482 (514)
Q Consensus       481 ~~  482 (514)
                      +.
T Consensus       393 ~~  394 (399)
T 1c7n_A          393 LK  394 (399)
T ss_dssp             HC
T ss_pred             HH
Confidence            64

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.97  E-value=8.5e-30  Score=260.64  Aligned_cols=334  Identities=17%  Similarity=0.168  Sum_probs=239.0

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecccccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDS   90 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~   90 (514)
                      +|+.++|+.++   ++++  +|++.+++.++++.++...  ..   ...+..+++++++++++|.+++++++||++|+..
T Consensus        38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~--~~---~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~  112 (397)
T 2ord_A           38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCS--NL---FWNRPQMELAELLSKNTFGGKVFFANTGTEANEA  112 (397)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC--TT---SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHH
T ss_pred             CCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCc--cc---cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHH
Confidence            67788999765   6775  6899999999998854421  11   1357889999999999998888999999999999


Q ss_pred             chhhcccc-----CCCceEE-ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         91 TLFTLGKM-----IPGLHYI-SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        91 ~l~~l~~~-----~~gd~v~-~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++.++...     ..++.|+ .++.+|.....+++..|.+.+....                .|                
T Consensus       113 al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~----------------~p----------------  160 (397)
T 2ord_A          113 AIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPF----------------EP----------------  160 (397)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGG----------------CS----------------
T ss_pred             HHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhcccc----------------CC----------------
Confidence            88876421     1234455 5555556666566655543110000                00                


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                                                          .-..++.++.+|
T Consensus       161 --------------------------------------------------------------------~~~~~~~~~~~d  172 (397)
T 2ord_A          161 --------------------------------------------------------------------LVPGFEYFEFNN  172 (397)
T ss_dssp             --------------------------------------------------------------------CCTTEEEECTTC
T ss_pred             --------------------------------------------------------------------CCCCeeEecCCC
Confidence                                                                                001244555556


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCcc-ccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCcc-ccCCCcc
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGA-ICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIG-ERDGQLH  318 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~-~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~-~~~~~~~  318 (514)
                      .+.+++.++    +++++|++++++||||. +++   +++|.++|++||+++|+||+|+ ++..|.   .+. ...+.  
T Consensus       173 ~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~--  243 (397)
T 2ord_A          173 VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK---LFAYQKYGV--  243 (397)
T ss_dssp             HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHHTC--
T ss_pred             HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc---chhhhhhCC--
Confidence            776666664    46899999999999999 665   8999999999999999999998 332221   111 11221  


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .+|++  ||||++++ |   |+++++++++ .+.......  +.+.+++.++++.++++.+..   ++.+++++++++++
T Consensus       244 ~~d~~--s~sK~~~~-G~r~G~~~~~~~~~-~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l  314 (397)
T 2ord_A          244 VPDVL--TTAKGLGG-GVPIGAVIVNERAN-VLEPGDHGT--TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYL  314 (397)
T ss_dssp             CCSEE--EECGGGGT-TSCCEEEEECSTTC-CCCTTSSCC--SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHH
T ss_pred             CCCee--eeccccCC-CcCeEEEEEchHhc-ccCCCCcCC--CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHH
Confidence            46777  88999985 5   8998888765 443322222  446788999999999987754   35788889999999


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      .+.|++.  +++.   ..+.+.++++.+++..+..++.+.|+ ++||.+.++.       .+++|++++...++++++++
T Consensus       315 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~-------~~~iRis~~~~~~~e~i~~~  386 (397)
T 2ord_A          315 MKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCF-ENKLLVVPAG-------NNTIRFLPPLTVEYGEIDLA  386 (397)
T ss_dssp             HHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHH-HTTEECEEET-------TTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHH-HCCCEEccCC-------CCEEEEECCcCCCHHHHHHH
Confidence            9988875  3443   23456788888876555788999996 7999998752       46899999888999999999


Q ss_pred             HHHHHHHHHH
Q psy16848        471 VTDLLAVWKS  480 (514)
Q Consensus       471 ~~~l~~~l~~  480 (514)
                      +++|++++++
T Consensus       387 ~~~l~~~l~~  396 (397)
T 2ord_A          387 VETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.97  E-value=1.8e-29  Score=256.80  Aligned_cols=334  Identities=18%  Similarity=0.129  Sum_probs=243.2

Q ss_pred             eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhh
Q psy16848         19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~   94 (514)
                      .++||..+..  ..+|.+.+++.++++. ...       ++......++++.++++++.+  .+++++||++|+..++.+
T Consensus        26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~-------y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~   97 (381)
T 1v2d_A           26 GAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQ-------YAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS   97 (381)
T ss_dssp             TCEECCCCSCSSCCCHHHHHHHHHHTTT-SCS-------CCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHH-hcC-------CCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence            4788865443  3478999999988765 211       122223578899999998864  577778889999999988


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCC-hHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHND-VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      +..  +||.|+++.+.|.+....++..|.+++.++.+. .+                     .+                
T Consensus        98 ~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~---------------------~~----------------  138 (381)
T 1v2d_A           98 LVG--PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE---------------------GF----------------  138 (381)
T ss_dssp             HCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT---------------------EE----------------
T ss_pred             hCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc---------------------cC----------------
Confidence            865  999999999999998877777777665443310 00                     00                


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                          ..|.+.++    
T Consensus       139 --------------------------------------------------------------------~~d~~~l~----  146 (381)
T 1v2d_A          139 --------------------------------------------------------------------RLDLSALE----  146 (381)
T ss_dssp             --------------------------------------------------------------------ECCHHHHH----
T ss_pred             --------------------------------------------------------------------CcCHHHHH----
Confidence                                                                                01333333    


Q ss_pred             hccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      +..+++++++++++++||||.++|   +++|.++|++||+++|+||+|+.+..|..+.++...   ..+.|++++|+||+
T Consensus       147 ~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~---~~~~~~~~~s~sK~  223 (381)
T 1v2d_A          147 KALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF---APERTFTVGSAGKR  223 (381)
T ss_dssp             TTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH---CTTTEEEEEEHHHH
T ss_pred             HhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh---cCCCEEEEeechhh
Confidence            333456899999999999999998   899999999999999999999955444433233222   23689999999999


Q ss_pred             ccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy16848        331 FGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVELRAKHQDIVAYLRNELIQIGFPV  406 (514)
Q Consensus       331 lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  406 (514)
                      +|.+|   |++++++++++.+.......  +.+.++..+.++.++++... .+++++++++++++++++.+.|++.|+.+
T Consensus       224 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  301 (381)
T 1v2d_A          224 LEATGYRVGWIVGPKEFMPRLAGMRQWT--SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRV  301 (381)
T ss_dssp             TTCGGGCCEEEECCTTTHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCcccceEEEEeCHHHHHHHHHHHhhc--ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEe
Confidence            98656   99999999888887654332  33567788888888887542 45678899999999999999999988887


Q ss_pred             ccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        407 EHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       407 ~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      ..+. +.++++.++.. +   +.+.+ +++||.+.++..+.. +.+.+++|++++.  +++++++++++|++++++.+.
T Consensus       302 ~~~~~~~~~~~~~~~~-~---~~~~l-~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          302 YVPEGTYFLMAELPGW-D---AFRLV-EEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             ECCSBSSEEEEECTTC-C---HHHHH-HHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred             cCCCcceEEEEecChH-h---HHHHH-HhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence            7665 44677777654 2   55555 599999999876543 2346799999985  899999999999999877654

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=7.9e-29  Score=251.96  Aligned_cols=331  Identities=15%  Similarity=0.155  Sum_probs=246.8

Q ss_pred             ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--c-EEEEeccccccccchhh
Q psy16848         18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--A-GLVFTSCYVANDSTLFT   94 (514)
Q Consensus        18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~-~i~~~sGt~a~~~~l~~   94 (514)
                      ..+.|..+... .+|++.+++.+++..   .+     .....+..+++++++++++|.+  + +++++|||+|+..++.+
T Consensus        20 ~~~l~~~~~~~-~~~~v~~a~~~~~~~---~~-----~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~   90 (386)
T 2dr1_A           20 KYKLFTAGPVA-CFPEVLEIMKVQMFS---HR-----SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN   90 (386)
T ss_dssp             CSEECCSSSCC-CCHHHHHHTTSCCCC---TT-----SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred             cceeecCCCcC-CcHHHHHHHhccccc---cc-----CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence            45666644332 256676666554321   11     1112578899999999999976  4 45667888999999988


Q ss_pred             ccccCCCceEEecCccchh--hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         95 LGKMIPGLHYISDAGNHAS--MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~--~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      +..  +||.|+++.+.|.+  ....++..|.+++.++.+. +                                      
T Consensus        91 l~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~--------------------------------------  129 (386)
T 2dr1_A           91 GVS--KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-G--------------------------------------  129 (386)
T ss_dssp             HSC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T--------------------------------------
T ss_pred             hhc--CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-C--------------------------------------
Confidence            865  99999999999988  6666666666665544310 0                                      


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                          ...|.+.+++.+
T Consensus       130 --------------------------------------------------------------------~~~d~~~l~~~l  141 (386)
T 2dr1_A          130 --------------------------------------------------------------------KAVKPEDLDDAL  141 (386)
T ss_dssp             --------------------------------------------------------------------CCCCHHHHHHHH
T ss_pred             --------------------------------------------------------------------CCCCHHHHHHHH
Confidence                                                                                012556666666


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      ++  ++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+...     + +..  ..++|++++|+||+++
T Consensus       142 ~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~di~~~s~sK~~~  211 (386)
T 2dr1_A          142 RK--NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD-----I-KFD--KWGLDVVFSSSQKAFG  211 (386)
T ss_dssp             HH--CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBC-----C-CTT--TTTCSEEEEETTSTTC
T ss_pred             hc--CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcc-----c-ccc--ccCCcEEEEecccccc
Confidence            53  245789999999999999999999999999999999999999966531     1 111  2367999999999998


Q ss_pred             CC-C-eEEEecHHHHHHHHh----------------h--cCceEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q psy16848        333 NI-G-GYIVGTKNFIDTIRS----------------Y--AAGFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDI  391 (514)
Q Consensus       333 ~~-G-G~l~~~~~~~~~l~~----------------~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~  391 (514)
                      ++ | |++++++++++.+..                .  ....  ..+.+...++++.++++.+.+. ++++++++++++
T Consensus       212 ~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~  289 (386)
T 2dr1_A          212 VPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKEST--PSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKR  289 (386)
T ss_dssp             CCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSC--SSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCC--CCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            64 5 999999998887632                1  1111  3357788888888899877555 578899999999


Q ss_pred             HHHHHHHHHhCCCccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        392 VAYLRNELIQIGFPVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       392 ~~~l~~~L~~~g~~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      ++++.+.|++.|+++..+    .+.++++.++...+..++.+.|. ++||.+.++..+.   ..+++|++++..++++++
T Consensus       290 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~---~~~~iRi~~~~~~~~~~i  365 (386)
T 2dr1_A          290 AKMVREGVREIGLDILAEPGHESPTITAVLTPPGIKGDEVYEAMR-KRGFELAKGYGSV---KEKTFRIGHMGYMKFEDI  365 (386)
T ss_dssp             HHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHH-HTTEECEECCGGG---TTTEEEEECCSSCCHHHH
T ss_pred             HHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCCHHHHHHHHH-HCCeEEecCcccc---CCCEEEEECCCCCCHHHH
Confidence            999999999988877655    35688888875556788999996 7799999877432   356999999988999999


Q ss_pred             HHHHHHHHHHHHHcC
Q psy16848        468 DKFVTDLLAVWKSLD  482 (514)
Q Consensus       468 d~~~~~l~~~l~~~~  482 (514)
                      ++++++|++++++++
T Consensus       366 ~~~~~~l~~~~~~~~  380 (386)
T 2dr1_A          366 QEMLDNLREVINELK  380 (386)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999988764

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.97  E-value=6.5e-29  Score=250.44  Aligned_cols=324  Identities=12%  Similarity=0.073  Sum_probs=240.4

Q ss_pred             CCceeeecccC-CCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccccccc
Q psy16848         16 SNRVTCRLSSV-QYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~-~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~~   91 (514)
                      +|+.++||.++ ..+ .+|++.+++.++++... .++        .+...+++++++++++.  +..++++|||+|+..+
T Consensus        24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~-~y~--------~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~   94 (361)
T 3ftb_A           24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKNLG-VYP--------DVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELS   94 (361)
T ss_dssp             ----CEETTCCCCTTCSCHHHHTTHHHHHHGGG-SCC--------CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCCCCHHHHHHHHHHHHHhc-CCC--------CccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHH
Confidence            67789999765 334 47899999999988631 111        12347899999999884  3456667778888888


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++      |+|+++.++|.+....++..|.+++.++.....                                     
T Consensus        95 ~~~~------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------------------  131 (361)
T 3ftb_A           95 ISLF------EKILIIVPSYAEYEINAKKHGVSVVFSYLDENM-------------------------------------  131 (361)
T ss_dssp             HTTC------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTS-------------------------------------
T ss_pred             HHHc------CcEEEecCChHHHHHHHHHcCCeEEEeecCccc-------------------------------------
Confidence            7655      899999999999887777777766654431000                                     


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                            .-+.+.+++.
T Consensus       132 ----------------------------------------------------------------------~~~~~~l~~~  141 (361)
T 3ftb_A          132 ----------------------------------------------------------------------CIDYEDIISK  141 (361)
T ss_dssp             ----------------------------------------------------------------------CCCHHHHHHH
T ss_pred             ----------------------------------------------------------------------CCCHHHHHHh
Confidence                                                                                  0023344444


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      ++    + ++++++++|+||+|.++|   +++|.++|++||+++|+||+|+.+..+ ...+...... ..+.+++++|+|
T Consensus       142 l~----~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~-~~~~~i~~~s~s  214 (361)
T 3ftb_A          142 ID----D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIK-NYSCLFIIRAMT  214 (361)
T ss_dssp             TT----T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTT-TCSSEEEEEESS
T ss_pred             cc----C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcc-cCCCEEEEeeCh
Confidence            43    3 789999999999999998   688888899999999999999955443 2222222222 235678899999


Q ss_pred             ccccCCC---eEEE-ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        329 KAFGNIG---GYIV-GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       329 K~lg~~G---G~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      |.+|.+|   |+++ .++++.+.+......+    +.++..++++.++++.  .+++++.+++++++++++.+.|+++ +
T Consensus       215 K~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~  288 (361)
T 3ftb_A          215 KFFAMPGIRFGYGITNNKEIAAKIKAKQNPW----NINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGF  288 (361)
T ss_dssp             STTSCGGGCCEEEEESCHHHHHHHHTTSCTT----CSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             hhcCCCCcceeEEEeCCHHHHHHHHhhCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9998656   8988 8899999988765443    6788888888888873  4567788999999999999999998 7


Q ss_pred             Cc-cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        404 FP-VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       404 ~~-~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +. +..+.++++++.++. .+..++.+.|. ++||.+.++..+. ..+.+++|++++   +.++++++++.++++.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          289 IKRVFSPHANFVLCRLEN-ISGEKLYDSLL-KEDIVIRRCCNFI-GLDDSFVRFAIK---DEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             EEEEECCSSSEEEEEESS-SCHHHHHHHHH-TTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             CceecCCCCeEEEEEcCC-CCHHHHHHHHH-HCCeEEeeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence            77 667788888888876 45788999996 7899999988643 344689999998   889999999999987654

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.97  E-value=1.4e-29  Score=261.18  Aligned_cols=337  Identities=18%  Similarity=0.133  Sum_probs=239.8

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++||.++   .+++  +|++.+++.++++++....  ..   ...+..+++++++++++|.+++++++||++|+.
T Consensus        54 ~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~--~~---~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~  128 (420)
T 2pb2_A           54 QQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS--NV---FTNEPALRLGRKLIDATFAERVLFMNSGTEANE  128 (420)
T ss_dssp             TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC--TT---SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc--Cc---cCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHH
Confidence            367888999765   5665  7999999999998754321  11   245788999999999999888999999999999


Q ss_pred             cchhhcccc-----CCC-ceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         90 STLFTLGKM-----IPG-LHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        90 ~~l~~l~~~-----~~g-d~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      .++.++...     .+| +.|++.+ .+|.....+++..+.+.....                                 
T Consensus       129 ~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~---------------------------------  175 (420)
T 2pb2_A          129 TAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG---------------------------------  175 (420)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTT---------------------------------
T ss_pred             HHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCcccccc---------------------------------
Confidence            999876421     034 3666554 455555555555443311000                                 


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                         +......+..++.
T Consensus       176 -------------------------------------------------------------------~~p~~~~~~~~~~  188 (420)
T 2pb2_A          176 -------------------------------------------------------------------FGPKPADIIHVPF  188 (420)
T ss_dssp             -------------------------------------------------------------------SSSCCSCEEEECT
T ss_pred             -------------------------------------------------------------------CCCCCCCeEEecC
Confidence                                                                               0000112445555


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCcc-ccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCc-cccCCC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGA-ICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGI-GERDGQ  316 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~-~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~-~~~~~~  316 (514)
                      +|.+.+++.+.    +++++|++++++|++|. +++   +++|+++|++||+++|+||+|+ ++..   +..+ .+..+.
T Consensus       189 ~d~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~---g~~~~~~~~~~  261 (420)
T 2pb2_A          189 NDLHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRT---GDLFAYMHYGV  261 (420)
T ss_dssp             TCHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT---SSSSHHHHHTC
T ss_pred             CCHHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccC---CcHHHHHhcCC
Confidence            67777776664    46899999999998885 344   8999999999999999999997 3333   2222 122332


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                        .+|++  ||||++++ |   |++++++++++.+.......  +.+.+++.++++.++|+.+.+   ++..++++++++
T Consensus       262 --~~dii--t~sK~l~~-G~~iG~~~~~~~l~~~l~~~~~~~--t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~  331 (420)
T 2pb2_A          262 --TPDIL--TSAKALGG-GFPVSAMLTTQEIASAFHVGSHGS--TYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQ  331 (420)
T ss_dssp             --CCSEE--EECGGGGT-TSCCEEEEECHHHHTTCC----CC--EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHH
T ss_pred             --CCCeE--EecccccC-CCceEEEEEhHHHHHhhcCCCcCc--ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHH
Confidence              57888  78999985 5   99999988776665432233  347789999999999998754   357888889999


Q ss_pred             HHHHHHHhC--CCcc---ccCCCcEEEEEeCCCc--cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        394 YLRNELIQI--GFPV---EHTPSHIIPIKIGNPA--LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       394 ~l~~~L~~~--g~~~---~~~~~~~~~i~l~~~~--~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      ++.+.|+++  +++.   ..+.+.++++.++...  +..++.+.|+ ++||.+.++.       .+++|++++..++++|
T Consensus       332 ~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~-------~~~iRl~~~~~~t~ee  403 (420)
T 2pb2_A          332 QFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGA-EAGVMVLNAG-------ADVMRFAPSLVVEEAD  403 (420)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHH-HTTEECEESS-------TTEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHH-HCCCEEEeCC-------CCEEEEECCCCCCHHH
Confidence            999888775  3332   3456778888886532  4678999996 8999998642       4689999988899999


Q ss_pred             HHHHHHHHHHHHHHc
Q psy16848        467 IDKFVTDLLAVWKSL  481 (514)
Q Consensus       467 id~~~~~l~~~l~~~  481 (514)
                      +++++++|+++++++
T Consensus       404 i~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          404 IHEGMQRFAQAVGKV  418 (420)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.97  E-value=6.6e-29  Score=259.87  Aligned_cols=347  Identities=17%  Similarity=0.144  Sum_probs=245.4

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a   87 (514)
                      .+|+.|+||.++   ..++  ||+|++++.+++++....+.   . .+..+...++++++++++  +.++++|++||++|
T Consensus        51 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~---~-~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA  126 (476)
T 3i5t_A           51 EDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP---W-YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTA  126 (476)
T ss_dssp             TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT---T-TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHH
T ss_pred             CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc---C-ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHH
Confidence            377888998665   3354  79999999999998544222   1 345688999999999998  46778999999999


Q ss_pred             cccchhhcccc------CCC-ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         88 NDSTLFTLGKM------IPG-LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        88 ~~~~l~~l~~~------~~g-d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      +..++..+...      .++ ..|+.++.+|.....+....+.....-..                .+.           
T Consensus       127 ~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~----------------~~~-----------  179 (476)
T 3i5t_A          127 VDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNF----------------DIA-----------  179 (476)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTS----------------CCC-----------
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhcccc----------------CCC-----------
Confidence            99999887531      123 34455666666666555544432210000                000           


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                             ..+...+.+
T Consensus       180 -----------------------------------------------------------------------~~~~~~~~~  188 (476)
T 3i5t_A          180 -----------------------------------------------------------------------QDRISFLSS  188 (476)
T ss_dssp             -----------------------------------------------------------------------CTTEEEECC
T ss_pred             -----------------------------------------------------------------------CCCcEEeCC
Confidence                                                                                   000011111


Q ss_pred             cC-----C-C--------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-cc
Q psy16848        241 RH-----N-D--------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VG  301 (514)
Q Consensus       241 ~~-----~-d--------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g  301 (514)
                      |.     + +        ++.+++.+++...+++++|++++++|++|...+    +++|+++|++||++||+||+|+ +|
T Consensus       189 p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~g  268 (476)
T 3i5t_A          189 PNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFG  268 (476)
T ss_dssp             CCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence            11     1 1        567777777543356899999999999998665    9999999999999999999999 66


Q ss_pred             ccCCCCCCccc-cCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhc---C--ceEeccCCcHHHHHHHHH
Q psy16848        302 LYGEHGAGIGE-RDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYA---A--GFIFTTSLPPTVLAGARE  371 (514)
Q Consensus       302 ~~g~~~~~~~~-~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~---~--~~~~~~~~~~~~~~a~~~  371 (514)
                      ..|..+  ... ..+.  .+|++  +++|++++ |    |++++++++++.+....   .  ....+++.+++.++++.+
T Consensus       269 r~G~~~--~~~~~~~v--~pdi~--t~sK~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~a  341 (476)
T 3i5t_A          269 RCGEWF--ASEKVFGV--VPDII--TFAKGVTS-GYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALA  341 (476)
T ss_dssp             TTSSSC--HHHHTTCC--CCSEE--EECGGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHH
T ss_pred             cccCce--eeecccCC--Ccchh--hhhhhhcC-CCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHH
Confidence            655421  122 4444  68888  78899986 4    89999999998886542   1  112356789999999999


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc---cccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCC
Q psy16848        372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP---VEHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKG  436 (514)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~G  436 (514)
                      +|+.+.++.   +.++++++.+++++.|+++ .++   .+.+.+.++.+.+....           ....+++.|+ ++|
T Consensus       342 aL~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G  417 (476)
T 3i5t_A          342 NIELMEREG---IVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCF-ELG  417 (476)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHhHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHH-HCC
Confidence            999875544   7888889999999998876 232   23456778888776431           2567888886 899


Q ss_pred             eEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        437 HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       437 I~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      |.+.+.       + +++|++++..+|++++++++++|+++++++.
T Consensus       418 v~v~~~-------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~  455 (476)
T 3i5t_A          418 LIVRPL-------G-DLCVISPPLIISRAQIDEMVAIMRQAITEVS  455 (476)
T ss_dssp             EECEEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEec-------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999862       1 6899999999999999999999999987653

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.97  E-value=1.2e-28  Score=257.21  Aligned_cols=348  Identities=15%  Similarity=0.099  Sum_probs=238.9

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a   87 (514)
                      .+|+.++||.++   ..++  ||++.+++.+++++..+.++   ...+..+...++++++++++  +.++++|++||++|
T Consensus        48 ~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA  124 (460)
T 3gju_A           48 NNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA---YVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA  124 (460)
T ss_dssp             TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC---CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred             CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHH
Confidence            377889999765   4454  79999999999998654322   23345678899999999997  45678889999999


Q ss_pred             cccchhhcccc------CCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         88 NDSTLFTLGKM------IPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        88 ~~~~l~~l~~~------~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      +..++..+...      .+++.|++ ++.+|.....+....+.....-.                               
T Consensus       125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-------------------------------  173 (460)
T 3gju_A          125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNA-------------------------------  173 (460)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTT-------------------------------
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccc-------------------------------
Confidence            99999877531      24455555 45555555544444433211000                               


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                           +......+..+
T Consensus       174 ---------------------------------------------------------------------~~~~~~~~~~~  184 (460)
T 3gju_A          174 ---------------------------------------------------------------------FDLPRAPVLHT  184 (460)
T ss_dssp             ---------------------------------------------------------------------TTCSCTTEEEE
T ss_pred             ---------------------------------------------------------------------cCCCCCCCEEe
Confidence                                                                                 00000111111


Q ss_pred             c--C----CC------------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccc
Q psy16848        241 R--H----ND------------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       241 ~--~----~d------------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~  298 (514)
                      +  .    ++            .+.+++.+.+...+++++|++++++|++|...+    +++|+++|++||++||+||+|
T Consensus       185 ~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~  264 (460)
T 3gju_A          185 EAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVV  264 (460)
T ss_dssp             CCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence            1  1    11            467777776543356899999999999998766    999999999999999999999


Q ss_pred             c-ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhh-----cCceEeccCCcHHHHHHH
Q psy16848        299 A-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSY-----AAGFIFTTSLPPTVLAGA  369 (514)
Q Consensus       299 ~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~a~  369 (514)
                      + +|..|..+  ..+..+.  .+|++  +|||++++.+   |++++++++++.+...     ......+++.+++.++++
T Consensus       265 ~g~gr~g~~~--~~~~~~~--~pdi~--t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa  338 (460)
T 3gju_A          265 TGFGRLGTMF--GSDHYGI--KPDLI--TIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAG  338 (460)
T ss_dssp             TTTTTTSSSC--HHHHHTC--CCSEE--EECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHH
T ss_pred             cCCCcccccc--hHhhcCC--CCCee--eeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHH
Confidence            9 66554322  1233333  67888  7889997732   9999999999988532     111223557899999999


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHH----HhCC-CccccCCCcEEEEEeCCCc-----------cHHHHHHHHHH
Q psy16848        370 REAIRILSSQEGVELRAKHQDIVAYLRNEL----IQIG-FPVEHTPSHIIPIKIGNPA-----------LNTKICDMLLK  433 (514)
Q Consensus       370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~  433 (514)
                      .++|+.+.++.   ..++++++.+++++.|    .+.+ +....+.+.++.+.+....           ...++.+.|+ 
T Consensus       339 ~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  414 (460)
T 3gju_A          339 VANLELIDEMD---LVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALA-  414 (460)
T ss_dssp             HHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-
T ss_pred             HHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHH-
Confidence            99999775444   4455555555555555    4332 3334556778888776421           2557888886 


Q ss_pred             hCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        434 EKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       434 ~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++||.+.++.      ..+++|++++..+|++++++++++|+++++++
T Consensus       415 ~~Gv~v~~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  456 (460)
T 3gju_A          415 ASGVIGRAMP------QGDILGFAPPLCLTREQADIVVSKTADAVKSV  456 (460)
T ss_dssp             HTTEECEECS------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCeEEecCC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8999998654      24699999999999999999999999998765

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.97  E-value=2.8e-29  Score=257.95  Aligned_cols=330  Identities=19%  Similarity=0.148  Sum_probs=237.1

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~~   89 (514)
                      +|+.|+|+.+.   ..++  ||+|++++.+++++. ...+      +......++++++++++ +.++++|++|||+|++
T Consensus        85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~-~~~~------~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e  157 (454)
T 4ao9_A           85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGG-INLT------GHNLLEGRLARLICERFPQIEQLRFTNSGTEANL  157 (454)
T ss_dssp             TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTC-SCCC------SEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHH
T ss_pred             CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcC-CCcc------CCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHH
Confidence            66677777432   2233  799999999999873 2222      22355678999999987 5678888999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .|++..                                              +..++|+++|.|+|+||..-        
T Consensus       158 ~AiklA----------------------------------------------r~~tgr~~ii~~~~~yHG~t--------  183 (454)
T 4ao9_A          158 MALTAA----------------------------------------------LHFTGRRKIVVFSGGYHGGV--------  183 (454)
T ss_dssp             HHHHHH----------------------------------------------HHHHTCCEEEEETTCBCSTT--------
T ss_pred             HHHHHH----------------------------------------------HhcccCCeEEEEeCCcCCcc--------
Confidence            999543                                              33456778888888886211        


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                        .+.....+.                                  .........+|++|.+.++
T Consensus       184 ------------------~~~~~~~~~----------------------------------~~~~~~~~~~p~nd~~~l~  211 (454)
T 4ao9_A          184 ------------------LGFGARPSP----------------------------------TTVPFDFLVLPYNDAQTAR  211 (454)
T ss_dssp             ------------------CBBSSSBCT----------------------------------TSCCSEEEEECTTCHHHHH
T ss_pred             ------------------ccccccccC----------------------------------ccCCCCcccCCCchHHHHH
Confidence                              111000000                                  0011235567899999999


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+++.. +++++|+++++++..|.+.|    +++|+++|++||++||+||+++ |+.|..+  ..+.+++  .+|++  
T Consensus       212 ~~l~~~~-~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~--a~e~~gv--~PDi~--  283 (454)
T 4ao9_A          212 AQIERHG-PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHG--LANKLGI--RSDLT--  283 (454)
T ss_dssp             HHHHHTG-GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTC--HHHHHTC--CCSEE--
T ss_pred             HHHhhcC-CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCcccc--chhccCC--CCcEE--
Confidence            9998764 34899999999999999988    8999999999999999999998 6665443  2345555  79999  


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      +++|.+|+ |   |++++++++.+.+......  ...+++.+++.++++.++|+.+.++.   ..+++.++.++|++.|+
T Consensus       284 t~gK~lgg-G~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~L~  359 (454)
T 4ao9_A          284 TLGKYIGG-GMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE---AAGALAERGEALRARLN  359 (454)
T ss_dssp             EEEGGGGT-TSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHH
T ss_pred             EeccccCC-CCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHH
Confidence            99999986 4   8899999999877653222  22355789999999999999886544   67788888888888887


Q ss_pred             hC----CCcc-ccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        401 QI----GFPV-EHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       401 ~~----g~~~-~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      ++    ++.. +...|.++.+.+.+.             .....+...|+ ++||++.|..         .+  .++..+
T Consensus       360 ~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p~~---------~~--~~s~~~  427 (454)
T 4ao9_A          360 ALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSPRG---------FV--VLSLPL  427 (454)
T ss_dssp             HHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCTTC---------EE--ECCTTC
T ss_pred             HHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcCCC---------CE--EEeCCC
Confidence            65    4322 234566888776321             11245667786 8999986422         23  344458


Q ss_pred             CHHHHHHHHHHHHHHHHHcC
Q psy16848        463 TREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~~  482 (514)
                      |++|||++++++++++.+.+
T Consensus       428 T~~dId~~l~al~~~l~~~~  447 (454)
T 4ao9_A          428 TDADIDRYVAAIGSFIGGHG  447 (454)
T ss_dssp             CHHHHHHHHHHHHHHHHHSG
T ss_pred             CHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.97  E-value=3.2e-29  Score=257.31  Aligned_cols=352  Identities=17%  Similarity=0.132  Sum_probs=244.3

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----C-CcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----K-EAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~-~~~i~~~sGt~a~   88 (514)
                      .+..+||++.+.  +..+|.+.+++.+++....  ..++....|..++.+++.+.+.+.+|    . +.++++++|++++
T Consensus        21 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~   98 (410)
T 3e2y_A           21 ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDN--MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL   98 (410)
T ss_dssp             TSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGG--GGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCcc--ccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence            345678886544  3357899999999887531  11111122344555555555555443    2 4567777788999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++..  +||.|+++.+.|......++..|.+++.++.....                                  
T Consensus        99 ~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~----------------------------------  142 (410)
T 3e2y_A           99 FNSIQGLVD--PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKP----------------------------------  142 (410)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC----------------------------------
T ss_pred             HHHHHHhcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccc----------------------------------
Confidence            999988866  99999999999999998888888877655431000                                  


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                        ..|..                                                ....++..+
T Consensus       143 ------------------~~g~~------------------------------------------------~~~~~~~~d  156 (410)
T 3e2y_A          143 ------------------TDGMK------------------------------------------------WTSSDWTFD  156 (410)
T ss_dssp             ------------------CCSSC------------------------------------------------CBGGGEECC
T ss_pred             ------------------ccccc------------------------------------------------ccccCCcCC
Confidence                              00000                                                000011112


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~  324 (514)
                      .+.+++...+++++|++++++||||.+++   +++|.++|++||+++|+||+|+.+.. +....++..... ..+.++++
T Consensus       157 ~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~~  235 (410)
T 3e2y_A          157 PRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPG-MWERTITI  235 (410)
T ss_dssp             HHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-CGGGEEEE
T ss_pred             HHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCC-ccCeEEEE
Confidence            23333333457899999999999999986   89999999999999999999994433 322222222222 23567999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH------hhhchHHHHHHHHHHHHHHH
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI------LSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~~~l  395 (514)
                      .|+||.+|.+|   ||+++++++++.+.......  +.+.+++.+.++.++++.      ....++++++++++++++++
T Consensus       236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  313 (410)
T 3e2y_A          236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNS--FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRM  313 (410)
T ss_dssp             EEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             ecchhhcCCCCceEEEEEECHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence            99999998657   99999999998887655433  336788888888888874      12456788899999999999


Q ss_pred             HHHHHhCCCccccCCCc-EEEEEeCCC---c--------cHHHHHHHHHHhCCeEEecccCCCCC----CCCcEEEEEeC
Q psy16848        396 RNELIQIGFPVEHTPSH-IIPIKIGNP---A--------LNTKICDMLLKEKGHYVQPINYPTVP----VGEEKIRLAPT  459 (514)
Q Consensus       396 ~~~L~~~g~~~~~~~~~-~~~i~l~~~---~--------~~~~~~~~Ll~~~GI~v~~~~~~~~~----~~~~~iRl~~~  459 (514)
                      .+.|++.|+.+..+.++ ++++.+...   .        ...+++..+++++||.+.++..|...    .+.+++|++++
T Consensus       314 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~  393 (410)
T 3e2y_A          314 VRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI  393 (410)
T ss_dssp             HHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC
T ss_pred             HHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc
Confidence            99999998887666544 566665421   1        12477787766889999998865432    23689999988


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLA  476 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~  476 (514)
                        .+++++++++++|++
T Consensus       394 --~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          394 --KKDSTLDAAEEIFRA  408 (410)
T ss_dssp             --CCHHHHHHHHHHHHT
T ss_pred             --CCHHHHHHHHHHHHh
Confidence              499999999999875

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.97  E-value=4.9e-29  Score=253.17  Aligned_cols=319  Identities=14%  Similarity=0.099  Sum_probs=234.9

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc----EEEEeccccccccchhhccccCCCceEE
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA----GLVFTSCYVANDSTLFTLGKMIPGLHYI  105 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~i~~~sGt~a~~~~l~~l~~~~~gd~v~  105 (514)
                      .+|++.+++.+++..    ..    .....+..+++++++++++|.+.    +++++||++|+. ++.++..  +||.|+
T Consensus        13 ~~~~v~~a~~~~~~~----~~----~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~--~gd~vi   81 (384)
T 3zrp_A           13 IKEDVLVAGLENNVG----FT----SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK--PNDKIL   81 (384)
T ss_dssp             CCHHHHHHTTCCSCC----TT----SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC--TTCEEE
T ss_pred             CCHHHHHHhhccccc----cc----cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC--CCCEEE
Confidence            367777766654421    11    11235778899999999998765    677778889988 8888865  999999


Q ss_pred             ecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848        106 SDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  183 (514)
Q Consensus       106 ~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (514)
                      ++.+.|.+.  ...++..|.+++.++.++                                                   
T Consensus        82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---------------------------------------------------  110 (384)
T 3zrp_A           82 VVSNGVFGDRWEQIFKRYPVNVKVLRPSP---------------------------------------------------  110 (384)
T ss_dssp             EECSSHHHHHHHHHHTTSSCEEEEECCST---------------------------------------------------
T ss_pred             EecCCcchHHHHHHHHHcCCcEEEecCCC---------------------------------------------------
Confidence            999888663  233344455444333210                                                   


Q ss_pred             ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEE
Q psy16848        184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV  263 (514)
Q Consensus       184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v  263 (514)
                                  .+                                            ..|.+.+++.+++.   ++++|
T Consensus       111 ------------~~--------------------------------------------~~d~~~l~~~i~~~---~~~~v  131 (384)
T 3zrp_A          111 ------------GD--------------------------------------------YVKPGEVEEEVRKS---EYKLV  131 (384)
T ss_dssp             ------------TC--------------------------------------------CCCHHHHHHHHHHS---CEEEE
T ss_pred             ------------CC--------------------------------------------CCCHHHHHHHHHhC---CCcEE
Confidence                        00                                            11566666666542   47899


Q ss_pred             EEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEec
Q psy16848        264 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGT  341 (514)
Q Consensus       264 v~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~  341 (514)
                      ++++++||+|.+.|+++|.++|++||+++|+|++|+.+...     . +..  ..++|++++|+||+++ +.| |+++++
T Consensus       132 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~  203 (384)
T 3zrp_A          132 ALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEE-----V-KAE--EWNVDVYLTASQKALGSAAGLGLLLLS  203 (384)
T ss_dssp             EEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSC-----C-CTT--TTTCSEEEEETTSTTCCCSSEEEEEEC
T ss_pred             EEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcc-----c-ccc--ccCCCEEEecCcccccCCCceEEEEEC
Confidence            99999999999999999999999999999999999865431     0 111  2368999999999885 456 999999


Q ss_pred             HHHHHHH-H------------hhcCc-------eEec-cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        342 KNFIDTI-R------------SYAAG-------FIFT-TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       342 ~~~~~~l-~------------~~~~~-------~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      +++++.+ .            .....       .... .+.+...+.++.++++.+...++++++++++++++++.+.|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  283 (384)
T 3zrp_A          204 PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLE  283 (384)
T ss_dssp             HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            9988777 1            11100       0001 245667777777888877666678899999999999999999


Q ss_pred             hCCCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       401 ~~g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      +.++.+..+.     +.++++.++. .+..++.+.|. ++||.+.++..+..    +++|++++..++++++++++++|+
T Consensus       284 ~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~----~~iRi~~~~~~~~e~i~~~~~~l~  357 (384)
T 3zrp_A          284 ALGLEIVARRPESYSNTVTGVILKV-ADPQKVLAGTV-NEGVEFAPGVHPAF----KYFRIGHMGWVTPNDAIIAISVIE  357 (384)
T ss_dssp             HTTCCBSCSSGGGBCSSEEEEECSS-SCHHHHHHHHH-TTTCCCEECCCTTC----CEEEEECCSSCCHHHHHHHHHHHH
T ss_pred             HCCCeEccCcccccCccEEEEECCC-CCHHHHHHHHH-HCCEEEecCCCCCc----CEEEEeccccCCHHHHHHHHHHHH
Confidence            9887776554     4567788876 56789999996 88999998774221    799999998899999999999999


Q ss_pred             HHHHHcCC
Q psy16848        476 AVWKSLDL  483 (514)
Q Consensus       476 ~~l~~~~~  483 (514)
                      +++++++.
T Consensus       358 ~~l~~~~~  365 (384)
T 3zrp_A          358 RTLRKLGE  365 (384)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            99998764

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.97  E-value=1.7e-28  Score=253.86  Aligned_cols=354  Identities=15%  Similarity=0.119  Sum_probs=230.3

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a   87 (514)
                      .+|+.++||.+   ..+++  +|++.+++.+++++.....    ...+..+...+++++++++++  .+++++++||++|
T Consensus        26 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea  101 (430)
T 3i4j_A           26 DAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVH----GSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEA  101 (430)
T ss_dssp             TTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC----TTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHH
T ss_pred             CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhccccc----ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence            36788999976   45665  7999999999998753211    113456788999999999985  4677888899999


Q ss_pred             cccchhhcccc------CCCceEEecCccchhhhh-hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         88 NDSTLFTLGKM------IPGLHYISDAGNHASMIQ-GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        88 ~~~~l~~l~~~------~~gd~v~~~~~~h~~~~~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      +..++..+...      .+++.|++.++.|+.... +....+........   ..+          .+.           
T Consensus       102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~---~~~----------~~~-----------  157 (430)
T 3i4j_A          102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELY---TPL----------MRP-----------  157 (430)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------------------------------CG-----------
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccccc---CCc----------CCC-----------
Confidence            99999877532      357777776666655443 33322221110000   000          000           


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                                                                ..+..+
T Consensus       158 --------------------------------------------------------------------------~~~~~~  163 (430)
T 3i4j_A          158 --------------------------------------------------------------------------EAWPKL  163 (430)
T ss_dssp             --------------------------------------------------------------------------GGSCEE
T ss_pred             --------------------------------------------------------------------------CCceEc
Confidence                                                                                      001112


Q ss_pred             cCC--------ChhHHHHHHhhccCCCceEEEEecCCC-CCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCC
Q psy16848        241 RHN--------DVNHLTQVLENMDVKIPKLVAFETVHS-MTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEH  306 (514)
Q Consensus       241 ~~~--------d~~~l~~~l~~~~~~~~~~vv~~~~~n-ptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~  306 (514)
                      +.+        |.+.+++.+++...+++++|++++++| ++|...+    +++|.++|++||+++|+||+|+ ++..|..
T Consensus       164 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~  243 (430)
T 3i4j_A          164 PKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP  243 (430)
T ss_dssp             CCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch
Confidence            211        347777777754324578899999999 9998777    9999999999999999999998 5555432


Q ss_pred             CCCccccC-CCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCc--eEeccCCcHHHHHHHHHHHHHhhhc
Q psy16848        307 GAGIGERD-GQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAG--FIFTTSLPPTVLAGAREAIRILSSQ  379 (514)
Q Consensus       307 ~~~~~~~~-~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~  379 (514)
                      .  ..... +.  .+|++  +|||++++ |    |++++++++++.+......  ...+++.+++.++++.++|+.+.++
T Consensus       244 ~--~~~~~~~~--~~di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~  316 (430)
T 3i4j_A          244 L--ALSRWSGV--TPDIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVERE  316 (430)
T ss_dssp             S--GGGGTTTC--CCSEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred             h--hhhhhcCC--CCcEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcc
Confidence            1  12223 33  57777  78999986 6    9999999999998764211  1124578999999999999977543


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhC-----CCccccCCCcEEEEEeCCC---------ccHHHHHHHHHHhCCeEEecccCC
Q psy16848        380 EGVELRAKHQDIVAYLRNELIQI-----GFPVEHTPSHIIPIKIGNP---------ALNTKICDMLLKEKGHYVQPINYP  445 (514)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~i~l~~~---------~~~~~~~~~Ll~~~GI~v~~~~~~  445 (514)
                      .   ..++++++.+++++.|.++     ++....+.+.++.+.+.+.         ....++++.|+ ++||.+.++..+
T Consensus       317 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~  392 (430)
T 3i4j_A          317 D---LTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGA  392 (430)
T ss_dssp             T---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHH-HTTEECC-----
T ss_pred             c---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEecccc
Confidence            3   5555566666665555543     3344456677888877531         12367889996 999999987544


Q ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        446 TVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       446 ~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ....+.+++|++++...+++++++++++|+++++++
T Consensus       393 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          393 EPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             ------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            444456799999998999999999999999998764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=3e-28  Score=248.44  Aligned_cols=340  Identities=13%  Similarity=0.070  Sum_probs=239.4

Q ss_pred             eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcch-HHHHHHHHHHhHcC----CCcEEEEeccccccccc
Q psy16848         19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSL-FHEKLEEDVAKLHQ----KEAGLVFTSCYVANDST   91 (514)
Q Consensus        19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~   91 (514)
                      .++||..++.  ..+|++.+++.+++......++     .+..+ +.+++.+.+.+.+|    .+..+++++|++++..+
T Consensus        29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~  103 (390)
T 1d2f_A           29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYS-----RWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL  103 (390)
T ss_dssp             -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCC-----CSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCC-----CCChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHH
Confidence            5788865443  3478999999998864111111     11344 55566666655555    23466666777889889


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++..  +||.|+++.+.|.+....++..|.+++.++... +                   +|.|              
T Consensus       104 ~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~-------------------~~~~--------------  147 (390)
T 1d2f_A          104 IRQWSE--TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEK-Q-------------------ADGW--------------  147 (390)
T ss_dssp             HHHSSC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEE-C-------------------SSSE--------------
T ss_pred             HHHhcC--CCCEEEEcCCCcHHHHHHHHHCCCEEEEeeccc-C-------------------CCcc--------------
Confidence            888865  999999999999999888887777766544310 0                   0000              


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                            ..|.+.+++.
T Consensus       148 ----------------------------------------------------------------------~~d~~~l~~~  157 (390)
T 1d2f_A          148 ----------------------------------------------------------------------FCDMGKLEAV  157 (390)
T ss_dssp             ----------------------------------------------------------------------ECCHHHHHHH
T ss_pred             ----------------------------------------------------------------------ccCHHHHHHH
Confidence                                                                                  0145556665


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccC-ceEEEcC
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHN-MDIISGT  326 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~-~di~~~S  326 (514)
                      +++   .+++++++++++||||.++|   +++|.++|++||+++|+||+|+.+.. |...   .+...+..+ .|. ++|
T Consensus       158 l~~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~---~~~~~~~~~~~d~-~~s  230 (390)
T 1d2f_A          158 LAK---PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPH---IPWSNVARGDWAL-LTS  230 (390)
T ss_dssp             HTS---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCC---CCGGGTCCSSEEE-EEC
T ss_pred             hcc---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC---cCHHHcchhhHhh-ccC
Confidence            542   25788998999999999998   89999999999999999999995443 2221   122222112 266 889


Q ss_pred             CcccccCCC---eEEEec-HHHHHHHHhhcC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        327 LGKAFGNIG---GYIVGT-KNFIDTIRSYAA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       327 ~sK~lg~~G---G~l~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +||++|.+|   |+++++ +++++.+..... ...+ .+.+++.+.++.++++.. .+.+++.+++++++++++.+.|++
T Consensus       231 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~  308 (390)
T 1d2f_A          231 GSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGL-SSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNA  308 (390)
T ss_dssp             SHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCC-CSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHhhcccChhheEEEECCHHHHHHHHHHHhhhccc-CCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998656   999885 788887776543 2211 156788888888888753 446778889999999999999998


Q ss_pred             -C-CCccccCCCcE-EEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        402 -I-GFPVEHTPSHI-IPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       402 -~-g~~~~~~~~~~-~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                       + ++.+..+.+++ +++.++.. .+..++.+.|++++||.+.++..+. +...+++|++++.  +++++++++++|+++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~~Ris~~~--~~~~l~~~l~~l~~~  385 (390)
T 1d2f_A          309 AFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG-EEGRGFVRLNAGC--PRSKLEKGVAGLINA  385 (390)
T ss_dssp             HCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred             hCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC-CCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence             5 77776666654 46777643 3577898998546899999988653 2346799999994  688999999999998


Q ss_pred             HHHc
Q psy16848        478 WKSL  481 (514)
Q Consensus       478 l~~~  481 (514)
                      ++++
T Consensus       386 l~~~  389 (390)
T 1d2f_A          386 IRAV  389 (390)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.97  E-value=1.9e-29  Score=256.13  Aligned_cols=335  Identities=17%  Similarity=0.157  Sum_probs=237.6

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCC-cCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhcc
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGG-TRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLG   96 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~   96 (514)
                      |+|++++. ..+|++.+++.+++........+ +....+..+...++++++++++|.+  .+++++|||+|+..++.++.
T Consensus         3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~   81 (382)
T 4eb5_A            3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             eeccCCCC-CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHH
Confidence            56776554 34789999999999863211111 1111123467889999999999975  56667778899999998886


Q ss_pred             ----ccCCCceEEecCccchhhhhhhhc---CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         97 ----KMIPGLHYISDAGNHASMIQGIRN---SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        97 ----~~~~gd~v~~~~~~h~~~~~~~~~---~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                          .  +||.|+++.++|.++..+++.   .|.+++.++.++                                     
T Consensus        82 ~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-------------------------------------  122 (382)
T 4eb5_A           82 MRNAR--KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-------------------------------------  122 (382)
T ss_dssp             HHHGG--GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-------------------------------------
T ss_pred             hhccC--CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-------------------------------------
Confidence                5  999999999999988765532   344443332210                                     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                .+                                            ..|.+.++
T Consensus       123 --------------------------~~--------------------------------------------~~d~~~l~  132 (382)
T 4eb5_A          123 --------------------------YG--------------------------------------------EVDVSFID  132 (382)
T ss_dssp             --------------------------TS--------------------------------------------CBCHHHHH
T ss_pred             --------------------------CC--------------------------------------------ccCHHHHH
Confidence                                      00                                            01444444


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                      +.+    ++++++|++++++||||.++|+++|.++|++||++ |+|++|+++..     ++ +..  ..++|++++|+||
T Consensus       133 ~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~-----~~-~~~--~~~~di~~~s~sK  199 (382)
T 4eb5_A          133 QKL----RDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQI-----EV-DVE--KIGADMLTISSND  199 (382)
T ss_dssp             HHC----CTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTB-----CC-CHH--HHTCSEEEEETGG
T ss_pred             HHh----cCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCc-----cc-Ccc--ccCCCEEEeehHH
Confidence            444    34689999999999999999999999999999999 99999996532     11 111  1257999999999


Q ss_pred             cccCCC-eEEEecHHHHHHHHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        330 AFGNIG-GYIVGTKNFIDTIRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       330 ~lg~~G-G~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      ++|+.| |+++++++.  .+.....+     .....+.+...+.++.++++.+. +++++++++++++++++.+.|+++ 
T Consensus       200 ~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~  276 (382)
T 4eb5_A          200 IYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIE  276 (382)
T ss_dssp             GTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             hcCCCceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCC
Confidence            988767 888887663  12211110     00112456666777777887664 357788999999999999999987 


Q ss_pred             CCccccCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC----------------CCCcEEEEEeCCCC
Q psy16848        403 GFPVEHTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP----------------VGEEKIRLAPTPFH  462 (514)
Q Consensus       403 g~~~~~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~----------------~~~~~iRl~~~~~~  462 (514)
                      ++.+..+.    ++++.+.++. .+..++.+.|. ++||.+.++..|...                .+.+++|++++..+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (382)
T 4eb5_A          277 ESYLNGHPEKRLPNNVNVRFSY-IEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN  354 (382)
T ss_dssp             TEEECSCSSSBCTTEEEEEETT-SCHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTC
T ss_pred             CeEEeCCcccCCCCEEEEEeCC-cCHHHHHHHHH-HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCC
Confidence            77665443    4577788773 45778999995 899999987653321                12579999999888


Q ss_pred             CHHHHHHHHHHHHHHHHHcC
Q psy16848        463 TREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++++++++++|++++++++
T Consensus       355 ~~~~i~~~~~~l~~~~~~~~  374 (382)
T 4eb5_A          355 TDEDVDRLLEVLPGVIERLR  374 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987754

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=8.2e-29  Score=253.89  Aligned_cols=338  Identities=14%  Similarity=0.115  Sum_probs=239.1

Q ss_pred             CceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccC--cchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848         17 NRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISG--NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL   92 (514)
Q Consensus        17 g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l   92 (514)
                      +..++|++++. ..+|++.+++.+++.....+.. +.+.++  ..+..+++++++++++|.+  ..+++++||+++..++
T Consensus        26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~  103 (406)
T 3cai_A           26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLA  103 (406)
T ss_dssp             SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHH
T ss_pred             CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHH
Confidence            45677877665 4578999999999987432221 122221  3467889999999999975  4565666677777777


Q ss_pred             hhcc-ccCCCceEEecCccchhhhhhhhc----CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         93 FTLG-KMIPGLHYISDAGNHASMIQGIRN----SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        93 ~~l~-~~~~gd~v~~~~~~h~~~~~~~~~----~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .++. ...+||.|+++.++|.++...+..    .|.+++.++.+. +                                 
T Consensus       104 ~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~-~---------------------------------  149 (406)
T 3cai_A          104 EASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI-E---------------------------------  149 (406)
T ss_dssp             HHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT-T---------------------------------
T ss_pred             HHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc-c---------------------------------
Confidence            6662 134999999999999987655432    344443332210 0                                 


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                  .+                                            ..|.+.
T Consensus       150 ----------------------------~~--------------------------------------------~~d~~~  157 (406)
T 3cai_A          150 ----------------------------TG--------------------------------------------ELPTWQ  157 (406)
T ss_dssp             ----------------------------TC--------------------------------------------CCCGGG
T ss_pred             ----------------------------cC--------------------------------------------CcCHHH
Confidence                                        00                                            014555


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +++.+.    +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|...     + +..  ..++|++++|+
T Consensus       158 l~~~l~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~-~~~--~~~~d~~~~s~  225 (406)
T 3cai_A          158 WESLIS----KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRL-----L-DIR--ETDADVVTVNA  225 (406)
T ss_dssp             HHHHCC----TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCC-----C-CHH--HHCCSEEEEEG
T ss_pred             HHHHhC----CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCC-----C-Cch--hcCCCEEEeeh
Confidence            655553    46899999999999999999999999999999999999999865421     1 111  23689999999


Q ss_pred             cccccCCCe-EEEecHHHHHHHHhhcCce------Ee-ccCCcHHHHHHHHHHHHHhhhc--------------hHHHHH
Q psy16848        328 GKAFGNIGG-YIVGTKNFIDTIRSYAAGF------IF-TTSLPPTVLAGAREAIRILSSQ--------------EGVELR  385 (514)
Q Consensus       328 sK~lg~~GG-~l~~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~a~~~~l~~~~~~--------------~~~~~~  385 (514)
                      ||++|+.+| ++++++++++.+......+      .+ ..+.+...++++.++++.+...              ++++++
T Consensus       226 ~K~~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~  305 (406)
T 3cai_A          226 HAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD  305 (406)
T ss_dssp             GGGTSCSCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred             hhhcCCCcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence            999886457 9999998887775543210      01 2245666777777778766432              367888


Q ss_pred             HHHHHHHHHHHHHHHhC-CCccccC---CCcEEEEEeCCCccHHHHHHHHHHhCCeEEeccc------CCCCCCCCcEEE
Q psy16848        386 AKHQDIVAYLRNELIQI-GFPVEHT---PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPIN------YPTVPVGEEKIR  455 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~-g~~~~~~---~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~------~~~~~~~~~~iR  455 (514)
                      ++++++++++.+.|+++ ++.+..+   .++++.+.++. .+..++.+.|. ++||.+.++.      .+..+.+.+++|
T Consensus       306 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~-~~gi~v~~g~~~~~~~~~g~~~~~~~iR  383 (406)
T 3cai_A          306 AYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHK-VPADRVVQRLA-DNGILAIANTGSRVLDVLGVNDVGGAVT  383 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETT-BCHHHHHHHHH-HTTEECEECCSCHHHHHHTTTTTTCCEE
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECC-cCHHHHHHHHH-HCCcEEecCChHHHHHHcCCCCCCCeEE
Confidence            99999999999999987 7766544   25578888764 45778999995 8999998775      111122357899


Q ss_pred             EEeCCCCCHHHHHHHHHHHHH
Q psy16848        456 LAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       456 l~~~~~~t~e~id~~~~~l~~  476 (514)
                      ++++..++++++++++++|++
T Consensus       384 is~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          384 VGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             EECCTTCCHHHHHHHHHHHHT
T ss_pred             EEeecCCCHHHHHHHHHHHHH
Confidence            999988899999999999875

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.97  E-value=1.7e-30  Score=262.97  Aligned_cols=336  Identities=10%  Similarity=0.057  Sum_probs=237.4

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCC-CCC-CcCcccCcchHHHHHHHH-HHhHcCCCcEEEEec-cccccccchhh
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGT-GAG-GTRNISGNSLFHEKLEED-VAKLHQKEAGLVFTS-CYVANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-la~~~~~~~~i~~~s-Gt~a~~~~l~~   94 (514)
                      .++|++.+....+|++.+++.+++..... .++ .+...++..+...+++++ +++++|.+ .+++++ ||+|+..++.+
T Consensus        10 i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~   88 (371)
T 2e7j_A           10 INIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHS   88 (371)
T ss_dssp             EECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHH
T ss_pred             EEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHH
Confidence            45555433444578999999988875321 111 112223345677899999 99999988 555555 57899999988


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeecc--CCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYR--HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      +..  +||.|+++.++|.+...+++..|.+++.++  .++.                                       
T Consensus        89 ~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~---------------------------------------  127 (371)
T 2e7j_A           89 LAK--KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD---------------------------------------  127 (371)
T ss_dssp             HCC--TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT---------------------------------------
T ss_pred             HhC--CCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCC---------------------------------------
Confidence            865  999999999999999988888888777665  3200                                       


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                             .                                             .-|.+.+++.+
T Consensus       128 -----------------------~---------------------------------------------~~d~~~l~~~l  139 (371)
T 2e7j_A          128 -----------------------Y---------------------------------------------AITPENFAQTI  139 (371)
T ss_dssp             -----------------------C---------------------------------------------CCCHHHHHHHH
T ss_pred             -----------------------C---------------------------------------------CcCHHHHHHHH
Confidence                                   0                                             00445555555


Q ss_pred             hhccC-CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        253 ENMDV-KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       253 ~~~~~-~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      ++... ++++++++++++||+|.++|+++|.++|++||+++|+|++|+.+...     + ...  ..++|++++|+||++
T Consensus       140 ~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~di~~~s~sK~~  211 (371)
T 2e7j_A          140 EETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP-----V-SLK--EIGADFIVGSGHKSM  211 (371)
T ss_dssp             HHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBC-----C-CHH--HHTCSEEEEEHHHHS
T ss_pred             HhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCC-----C-Chh--hcCCCEEEecCCcCC
Confidence            43211 35789999999999999999999999999999999999999975431     1 111  225789999999988


Q ss_pred             cCC-C-eEEEecHHHHHH-HHhhcCceEe-----ccCCcHHHHHHHHHHHHHhhhchHHHHHHHH--HHHHHHHHHHHHh
Q psy16848        332 GNI-G-GYIVGTKNFIDT-IRSYAAGFIF-----TTSLPPTVLAGAREAIRILSSQEGVELRAKH--QDIVAYLRNELIQ  401 (514)
Q Consensus       332 g~~-G-G~l~~~~~~~~~-l~~~~~~~~~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~L~~  401 (514)
                      +++ + |++++++++++. +.....++..     ..+.++..++++.++++.+..    ++.+++  +++++++.+.|++
T Consensus       212 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~  287 (371)
T 2e7j_A          212 AASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEK  287 (371)
T ss_dssp             SCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            653 3 999999888776 6554432111     234566667777777776643    467777  8889999999988


Q ss_pred             CCCccccC---CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEE-EEeCCC-CCHHHHHHHHHH
Q psy16848        402 IGFPVEHT---PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIR-LAPTPF-HTREMIDKFVTD  473 (514)
Q Consensus       402 ~g~~~~~~---~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iR-l~~~~~-~t~e~id~~~~~  473 (514)
                      .++.+..+   .++++++.++   +..++.+.|. ++||.+.+ ..+..   ...++++| ++++.. ++++++++++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~  362 (371)
T 2e7j_A          288 LGIKQLGDNPHNHDLMFFHAE---VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA  362 (371)
T ss_dssp             TTCEEESSSSCCSSEEEEECH---HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred             cCcEEecCCCccCceEEEECC---CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence            88777654   4678888876   4678888885 89999987 32221   11257899 999977 899999999999


Q ss_pred             HHHHHHHc
Q psy16848        474 LLAVWKSL  481 (514)
Q Consensus       474 l~~~l~~~  481 (514)
                      |+++++++
T Consensus       363 l~~~~~~~  370 (371)
T 2e7j_A          363 FKEIIEKY  370 (371)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998765

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.97  E-value=1.6e-28  Score=251.95  Aligned_cols=323  Identities=15%  Similarity=0.144  Sum_probs=237.4

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc---EEEEeccccccccchhhccccCCCceEEe
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTLFTLGKMIPGLHYIS  106 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l~~l~~~~~gd~v~~  106 (514)
                      .+|++.+++.+++    ....    .....+..++++++++++++.+.   .++++||++|+..++.++..  +||.|++
T Consensus        24 ~~~~v~~a~~~~~----~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~--~gd~Vl~   93 (411)
T 3nnk_A           24 ADPRVLRAMSSQL----IGQY----DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR--PGDKVLV   93 (411)
T ss_dssp             CCHHHHHHHTSCC----CCTT----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC--TTCEEEE
T ss_pred             CCHHHHHHhhccc----cccc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC--CCCEEEE
Confidence            3677766665432    1111    11224677899999999998654   34445678999999988865  9999999


Q ss_pred             cCccchh--hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeec
Q psy16848        107 DAGNHAS--MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE  184 (514)
Q Consensus       107 ~~~~h~~--~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (514)
                      +.+.|.+  ....++..|.+++.++.++                                                    
T Consensus        94 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------------------------------------------------  121 (411)
T 3nnk_A           94 PVFGRFGHLLCEIARRCRAEVHTIEVPW----------------------------------------------------  121 (411)
T ss_dssp             EECSHHHHHHHHHHHHTTCEEEEEECCT----------------------------------------------------
T ss_pred             ecCCchHHHHHHHHHHcCCeEEEEecCC----------------------------------------------------
Confidence            9999977  5555666666555443310                                                    


Q ss_pred             cccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEE
Q psy16848        185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA  264 (514)
Q Consensus       185 ~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv  264 (514)
                                 .+                                            ..|.+.+++.+++.   ++++|+
T Consensus       122 -----------~~--------------------------------------------~~d~~~l~~~i~~~---~~~~v~  143 (411)
T 3nnk_A          122 -----------GE--------------------------------------------VFTPDQVEDAVKRI---RPRLLL  143 (411)
T ss_dssp             -----------TC--------------------------------------------CCCHHHHHHHHHHH---CCSEEE
T ss_pred             -----------CC--------------------------------------------CCCHHHHHHHHhhC---CCeEEE
Confidence                       00                                            01556666666542   478999


Q ss_pred             EecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC-eEEEecH
Q psy16848        265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG-GYIVGTK  342 (514)
Q Consensus       265 ~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G-G~l~~~~  342 (514)
                      +++++||+|.+.|+++|.++|++||+++|+|++++++...        ......++|++++|+||++ ++.| |++++++
T Consensus       144 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~--------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~  215 (411)
T 3nnk_A          144 TVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNP--------LETDVWGLDAVSAGMQKCLGGPSGTSPITLSA  215 (411)
T ss_dssp             EESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBC--------CCTTTTTCSEEECCSTTTTCCCSSEEEEEECH
T ss_pred             EeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcc--------cchhccCCcEEEecCccccCCCCceEEEEECH
Confidence            9999999999999999999999999999999999865431        1111236899999999985 5556 9999999


Q ss_pred             HHHHHHHhhc----------------------------------CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        343 NFIDTIRSYA----------------------------------AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       343 ~~~~~l~~~~----------------------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      ++++.+....                                  .......+.+...++++.++++.....+++++++++
T Consensus       216 ~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~  295 (411)
T 3nnk_A          216 RMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARH  295 (411)
T ss_dssp             HHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9998887643                                  000012345777778888888877655678899999


Q ss_pred             HHHHHHHHHHHHhCCCccccCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCC
Q psy16848        389 QDIVAYLRNELIQIGFPVEHTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHT  463 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~~~~~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t  463 (514)
                      +++++++.+.|++.++.+..+.    +.++.+.+++..+..++.+.|++++||.++++..   +...+++|+++ +..++
T Consensus       296 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~---~~~~~~iRi~~~~~~~~  372 (411)
T 3nnk_A          296 KLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFG---PLHGKVWRIGTMGYNAR  372 (411)
T ss_dssp             HHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCG---GGTTTEEEEECCGGGCS
T ss_pred             HHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccC---CCCCCEEEEeCccCcCC
Confidence            9999999999999887765443    4577788876567889999997444999997643   22356999998 66678


Q ss_pred             HHHHHHHHHHHHHHHHHcCC
Q psy16848        464 REMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~~~~  483 (514)
                      ++++++++++|++++++++.
T Consensus       373 ~~~i~~~~~~l~~~l~~~~~  392 (411)
T 3nnk_A          373 KDCVMTTLSALEAVLNYLKF  392 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.97  E-value=1.1e-28  Score=251.23  Aligned_cols=316  Identities=16%  Similarity=0.145  Sum_probs=233.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccC-cchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc-cccCCCceEEe
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISG-NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL-GKMIPGLHYIS  106 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~  106 (514)
                      ++++.+++.+++.........+...+. ..+...++++.+++++|.+  .+++++|||+|+..++.++ ..  +||.|++
T Consensus        29 ~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~--~gd~vl~  106 (390)
T 1elu_A           29 PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH--QGDEILL  106 (390)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC--TTCEEEE
T ss_pred             CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCC--CCCEEEE
Confidence            568999999998864311100000111 1356789999999999865  5777888999999999888 55  9999999


Q ss_pred             cCccchhhhhhh----hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848        107 DAGNHASMIQGI----RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  182 (514)
Q Consensus       107 ~~~~h~~~~~~~----~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (514)
                      +.++|.+...++    +..|.++                                                         
T Consensus       107 ~~~~~~~~~~~~~~~~~~~g~~~---------------------------------------------------------  129 (390)
T 1elu_A          107 TDCEHPGIIAIVQAIAARFGITY---------------------------------------------------------  129 (390)
T ss_dssp             ETTCCHHHHHHHHHHHHHHCCEE---------------------------------------------------------
T ss_pred             ecCcccHHHHHHHHHHHHhCcEE---------------------------------------------------------
Confidence            999999876432    2334433                                                         


Q ss_pred             eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC---CChhHHHHHHhhccCCC
Q psy16848        183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH---NDVNHLTQVLENMDVKI  259 (514)
Q Consensus       183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~---~d~~~l~~~l~~~~~~~  259 (514)
                                                                             +.++.   .++..+.+.+++..+++
T Consensus       130 -------------------------------------------------------~~v~~~~~~~~~~d~~~l~~~i~~~  154 (390)
T 1elu_A          130 -------------------------------------------------------RFFPVAATLNQGDAAAVLANHLGPK  154 (390)
T ss_dssp             -------------------------------------------------------EEECCGGGSSSSCHHHHHHTTCCTT
T ss_pred             -------------------------------------------------------EEEcCCCCCCccchHHHHHHhcCCC
Confidence                                                                   33332   23333445555555567


Q ss_pred             ceEEEEecCCCCCccccCHHHHHHHHH----HcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc-cccCC
Q psy16848        260 PKLVAFETVHSMTGAICPLKELCEVSH----QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK-AFGNI  334 (514)
Q Consensus       260 ~~~vv~~~~~nptG~~~~l~~l~~l~~----~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK-~lg~~  334 (514)
                      +++|++++++||+|.++|+++|.++|+    ++|+++|+|++|++|...     + +..  ..++|++++|+|| .+++.
T Consensus       155 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~-----~-~~~--~~~~d~~~~s~~K~~~~~~  226 (390)
T 1elu_A          155 TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP-----L-DFS--RLEVDYYAFTGHKWFAGPA  226 (390)
T ss_dssp             EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBC-----C-CTT--TSCCSEEEEESSSTTCCCT
T ss_pred             ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcC-----C-Chh--hcCCCEEEccccccccCCC
Confidence            999999999999999999999999999    999999999999965431     1 111  2368999999999 44666


Q ss_pred             C-eEEEecHHHHHHHHhhcC---------------------ceEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q psy16848        335 G-GYIVGTKNFIDTIRSYAA---------------------GFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDI  391 (514)
Q Consensus       335 G-G~l~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~  391 (514)
                      | |++++++++++.+.....                     .+. ..+.+...+.++.++++.+.+. ++++++++++++
T Consensus       227 g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~  305 (390)
T 1elu_A          227 GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFE-VATSAYPQYAGLLAALQLHQRQGTAEERYQAICQR  305 (390)
T ss_dssp             TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGC-CSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             ceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhC-CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7 999999888776654221                     111 1245667777777788766543 378899999999


Q ss_pred             HHHHHHHHHhC-CCcccc---CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        392 VAYLRNELIQI-GFPVEH---TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       392 ~~~l~~~L~~~-g~~~~~---~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      ++++.+.|+++ |+.+..   +.++++.+.++...+..++.+.|. ++||.+.++.      .++++|++++..++++++
T Consensus       306 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~------~~~~iRis~~~~~~~~~i  378 (390)
T 1elu_A          306 SEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA------DPDCIRACCHYITDEEEI  378 (390)
T ss_dssp             HHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET------TTTEEEEECCTTCCHHHH
T ss_pred             HHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC------CCCeEEEecccCCCHHHH
Confidence            99999999997 777663   457788888865556788999995 8999998765      246899999888999999


Q ss_pred             HHHHHHHHH
Q psy16848        468 DKFVTDLLA  476 (514)
Q Consensus       468 d~~~~~l~~  476 (514)
                      ++++++|++
T Consensus       379 ~~~~~~l~~  387 (390)
T 1elu_A          379 NHLLARLAD  387 (390)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999999875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=7.9e-29  Score=251.35  Aligned_cols=299  Identities=20%  Similarity=0.168  Sum_probs=226.9

Q ss_pred             hHHHHHHHHHHhHcC---CCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848         60 LFHEKLEEDVAKLHQ---KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        60 ~~~~~~~~~la~~~~---~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l  136 (514)
                      ....++++.++++++   .+++++++||++|+..++.++.+  +||+|+++.+.|.+....++..|++++.++.+..+  
T Consensus        63 ~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--  138 (375)
T 3op7_A           63 EGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIE--PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEEN--  138 (375)
T ss_dssp             TCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGG--
T ss_pred             CChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccC--
Confidence            335788999999863   36778888899999999998866  99999999999999888877777766654431000  


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                                                                                +.                    
T Consensus       139 ----------------------------------------------------------~~--------------------  140 (375)
T 3op7_A          139 ----------------------------------------------------------GW--------------------  140 (375)
T ss_dssp             ----------------------------------------------------------TT--------------------
T ss_pred             ----------------------------------------------------------CC--------------------
Confidence                                                                      00                    


Q ss_pred             CCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEE
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTF  293 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li  293 (514)
                                               ..|.+.+++.+    ++++++|++++++||+|.++|   +++|.++|++||+++|
T Consensus       141 -------------------------~~d~~~l~~~l----~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li  191 (375)
T 3op7_A          141 -------------------------LPDLEKLRQLI----RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYIL  191 (375)
T ss_dssp             -------------------------EECHHHHHHHC----CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             -------------------------CCCHHHHHHhh----ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence                                     00344444444    356889999999999999999   9999999999999999


Q ss_pred             EeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848        294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAR  370 (514)
Q Consensus       294 ~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~  370 (514)
                      +||+|+.+..+ .   ...... ..+.+++++||||.+|.+|   |++++++++++.+......+  +.+.++..++++.
T Consensus       192 ~De~~~~~~~~-~---~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~  264 (375)
T 3op7_A          192 SDEVYRSFSEL-D---VPSIIE-VYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT--MICAGVFDDLVAQ  264 (375)
T ss_dssp             EECCSCCCSSS-C---CCCHHH-HCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGT--TSCCCHHHHHHHH
T ss_pred             EEccccccccc-C---CCchhh-hcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhh--ccCCCcHHHHHHH
Confidence            99999954432 1   111111 1356788899999998556   99999999999998766554  3466788888888


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccCCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC
Q psy16848        371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP  448 (514)
Q Consensus       371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~  448 (514)
                      .+++.. +..+++.+++++++++++.+.|++. ++.+..+.+ .+.++.++...+..++++.+++++||.+.++..+.. 
T Consensus       265 ~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-  342 (375)
T 3op7_A          265 LALAHY-QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER-  342 (375)
T ss_dssp             HHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-
T ss_pred             HHHhcc-HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-
Confidence            888754 3456778888899999999999986 666655544 355666666566788888886689999999886543 


Q ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        449 VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       449 ~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                        .+++|++++  .+.+++++++++|+++++++.
T Consensus       343 --~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~~  372 (375)
T 3op7_A          343 --DGYVRLGFA--CEQETLIKGLEKLSQFLRRFD  372 (375)
T ss_dssp             --TTEEEECCC--SCHHHHHHHHHHHHHHHGGGC
T ss_pred             --CCeEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence              579999987  456899999999999998764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.97  E-value=5.9e-29  Score=254.42  Aligned_cols=341  Identities=16%  Similarity=0.095  Sum_probs=244.2

Q ss_pred             CceeeecccC--CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEecccccccc
Q psy16848         17 NRVTCRLSSV--QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVANDS   90 (514)
Q Consensus        17 g~~~~d~~~~--~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a~~~   90 (514)
                      +..++||.++  ++.  .+|++.+++.+++++.+....    .++......++++.+++++|.  +..+++++|++++..
T Consensus        31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~----~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~  106 (397)
T 2zyj_A           31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVAL----QYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDL  106 (397)
T ss_dssp             STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHT----SCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHH
T ss_pred             CCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhh----CCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHH
Confidence            4568999654  332  367899999999876321001    111222346788888888875  345666666778888


Q ss_pred             chhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         91 TLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        91 ~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.++..  +||.|+++.+.|.+....++..|.+++.++.++ +                                    
T Consensus       107 ~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~------------------------------------  147 (397)
T 2zyj_A          107 VGKVFLD--EGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-E------------------------------------  147 (397)
T ss_dssp             HHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T------------------------------------
T ss_pred             HHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-C------------------------------------
Confidence            8888865  999999999999999888877777666543310 0                                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                             ..|.+.+++
T Consensus       148 -----------------------------------------------------------------------~~d~~~l~~  156 (397)
T 2zyj_A          148 -----------------------------------------------------------------------GPDLDALEE  156 (397)
T ss_dssp             -----------------------------------------------------------------------EECHHHHHH
T ss_pred             -----------------------------------------------------------------------CCCHHHHHH
Confidence                                                                                   014556666


Q ss_pred             HHhhccCCCceEE-EEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCcc---CceE
Q psy16848        251 VLENMDVKIPKLV-AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLH---NMDI  322 (514)
Q Consensus       251 ~l~~~~~~~~~~v-v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~---~~di  322 (514)
                      .+++.   +++++ ++++++||||.++|   +++|.++|++||+++|+||+|+.+.. +....++... + ..   +.++
T Consensus       157 ~l~~~---~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~-~~~~~~~~i  231 (397)
T 2zyj_A          157 VLKRE---RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFEL-A-REAGYPGVI  231 (397)
T ss_dssp             HHHHC---CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHH-H-HHHTCCCEE
T ss_pred             HHhhc---CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhh-C-cccCCCeEE
Confidence            66541   35676 67999999999998   56999999999999999999995443 2211111111 1 11   3568


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +++|+||+++ +|   ||+++++++++.+......+  +.+.+++.+.++.++++....+++++.+++++++++++.+.|
T Consensus       232 ~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  308 (397)
T 2zyj_A          232 YLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGA--DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHAL  308 (397)
T ss_dssp             EEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccccc-ccceeEEEecCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999 57   99999999998887655443  335578888888877764211456778888899999999999


Q ss_pred             HhC---CCccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        400 IQI---GFPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       400 ~~~---g~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      ++.   |+.+..+ .+.++++.++...+..++.+.|. ++||.+.++..+... .+.+++|++++.. +++++++++++|
T Consensus       309 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l  386 (397)
T 2zyj_A          309 DREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRL  386 (397)
T ss_dssp             HHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHH
T ss_pred             HHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHH-HCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHH
Confidence            875   6776544 35577888876556788999996 789999998754322 2467999999864 899999999999


Q ss_pred             HHHHHHc
Q psy16848        475 LAVWKSL  481 (514)
Q Consensus       475 ~~~l~~~  481 (514)
                      +++++++
T Consensus       387 ~~~l~~~  393 (397)
T 2zyj_A          387 GRALKGL  393 (397)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.97  E-value=7.8e-29  Score=249.87  Aligned_cols=330  Identities=13%  Similarity=0.128  Sum_probs=238.2

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhc
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l   95 (514)
                      .+|+..+.+..+|++.+++.+++   +  .   .......+...++++++++++|.+    .+++++|||+|+..++.++
T Consensus         5 ~~~~~~gp~~~~~~v~~a~~~~~---~--~---~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~   76 (366)
T 1m32_A            5 YLLLTPGPLTTSRTVKEAMLFDS---C--T---WDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA   76 (366)
T ss_dssp             CEECSSSSCCCCHHHHHTTCCCC---C--T---TSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred             cccccCCCcCCCHHHHHHHhhhh---c--C---CCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence            56776555556888888877632   1  1   110001156789999999999843    4677888899999999888


Q ss_pred             cccCCCceEEec-Cccchhh-hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         96 GKMIPGLHYISD-AGNHASM-IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        96 ~~~~~gd~v~~~-~~~h~~~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      ..  +||.|++. +++|.+. ...++..|.+++.++..+                                         
T Consensus        77 ~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-----------------------------------------  113 (366)
T 1m32_A           77 LG--PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-----------------------------------------  113 (366)
T ss_dssp             CC--TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-----------------------------------------
T ss_pred             cC--CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-----------------------------------------
Confidence            65  89987654 5778764 344444555554332210                                         


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                            .                                            ...|.+.+++.++
T Consensus       114 ----------------------~--------------------------------------------~~~d~~~l~~~l~  127 (366)
T 1m32_A          114 ----------------------V--------------------------------------------ARPDVQAIDAILN  127 (366)
T ss_dssp             ----------------------T--------------------------------------------SCCCHHHHHHHHH
T ss_pred             ----------------------C--------------------------------------------CCCCHHHHHHHHh
Confidence                                  0                                            0125666677666


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-c
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-G  332 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g  332 (514)
                      +.  ++++++++++++||+|.++|+++|.++|++||+++|+|++|+++...     + +..  ..++|++++|+||++ +
T Consensus       128 ~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~-----~-~~~--~~~~di~~~s~~K~~~~  197 (366)
T 1m32_A          128 AD--PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP-----M-DIA--ALHIDYLISSANKCIQG  197 (366)
T ss_dssp             HC--TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC-----C-CTT--TTTCSEEEEESSSTTCC
T ss_pred             cC--CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC-----c-ccc--ccCccEEEecCcccccC
Confidence            42  24688999999999999999999999999999999999999865431     1 111  235899999999987 5


Q ss_pred             CCC-eEEEecHHHHHHHHhhcCceE----------------eccCCcHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHH
Q psy16848        333 NIG-GYIVGTKNFIDTIRSYAAGFI----------------FTTSLPPTVLAGAREAIRILSSQE-GVELRAKHQDIVAY  394 (514)
Q Consensus       333 ~~G-G~l~~~~~~~~~l~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~  394 (514)
                      +.| |++++++++++.+......+.                ...+.+...++++.++++.+...+ ++++++++++++++
T Consensus       198 ~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~  277 (366)
T 1m32_A          198 VPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRS  277 (366)
T ss_dssp             CSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHH
Confidence            567 999999988876654211110                013567788888888888765444 67889999999999


Q ss_pred             HHHHHHhCCCccccC---CCc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848        395 LRNELIQIGFPVEHT---PSH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       395 l~~~L~~~g~~~~~~---~~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id  468 (514)
                      +.+.|++.++.+..+   .++ ++++.+++  ..+..++.+.|. ++||.+.++..+    +.+++|++++..+++++++
T Consensus       278 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~----~~~~iRi~~~~~~~~~~i~  352 (366)
T 1m32_A          278 LVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLK-EQGFVIYPGKVS----QSDCFRIGNIGEVYAADIT  352 (366)
T ss_dssp             HHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHH-HTTEECEECCCS----SSCEEEEECCSSCCHHHHH
T ss_pred             HHHHHHHCCCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHH-HCCEEEECCcCC----CCCEEEEecCCCCCHHHHH
Confidence            999999887776543   233 78888875  456788999996 889999987654    3579999999888999999


Q ss_pred             HHHHHHHHHHHHc
Q psy16848        469 KFVTDLLAVWKSL  481 (514)
Q Consensus       469 ~~~~~l~~~l~~~  481 (514)
                      +++++|+++++++
T Consensus       353 ~~~~~l~~~~~~~  365 (366)
T 1m32_A          353 ALLTAIRTAMYWT  365 (366)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999886543

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.97  E-value=7e-29  Score=253.26  Aligned_cols=328  Identities=16%  Similarity=0.141  Sum_probs=240.3

Q ss_pred             ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhh
Q psy16848         18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~   94 (514)
                      +.+.|..+.. ..+|++.+++.+++..   .     +.....+..+++++++++++|.+   .+++++|||+|+..++.+
T Consensus        34 ~~~l~~~~~~-~~~~~v~~a~~~~~~~---~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~  104 (393)
T 1vjo_A           34 SRLLLGPGPS-NAHPSVLQAMNVSPVG---H-----LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN  104 (393)
T ss_dssp             CCEECSSSCC-CCCHHHHHHHSSCCCC---T-----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred             cceeccCCCC-CCCHHHHHHHhccccc---c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHh
Confidence            3455544322 2357777776664431   0     11113477889999999999875   356667788999999988


Q ss_pred             ccccCCCceEEecCccchh--hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         95 LGKMIPGLHYISDAGNHAS--MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~--~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      +..  +||.|+++.+.|.+  ....++..|.+++.++.+. +                                      
T Consensus       105 ~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~--------------------------------------  143 (393)
T 1vjo_A          105 AVE--PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-G--------------------------------------  143 (393)
T ss_dssp             HCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T--------------------------------------
T ss_pred             ccC--CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-C--------------------------------------
Confidence            865  99999999999988  6666666666655443210 0                                      


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                          ...|.+.+++.+
T Consensus       144 --------------------------------------------------------------------~~~d~~~l~~~l  155 (393)
T 1vjo_A          144 --------------------------------------------------------------------EVFSLEELRTAL  155 (393)
T ss_dssp             --------------------------------------------------------------------CCCCHHHHHHHH
T ss_pred             --------------------------------------------------------------------CCCCHHHHHHHH
Confidence                                                                                012556666666


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                      ++.   ++++|++++++||+|.+.|+++|.++|+++|+++|+||+|++|..   .  + ...  ..++|++++|+||+++
T Consensus       156 ~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~---~--~-~~~--~~~~di~~~s~sK~l~  224 (393)
T 1vjo_A          156 ETH---RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV---P--I-FLD--AWGVDLAYSCSQKGLG  224 (393)
T ss_dssp             HHH---CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS---C--C-CTT--TTTCSEEECCSSSTTC
T ss_pred             hhC---CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCc---C--C-ccc--ccCccEEEEcCccccc
Confidence            542   478999999999999999999999999999999999999995532   1  1 122  2378999999999986


Q ss_pred             CCC--eEEEecHHHHHHHHhhc---Cce--------------Eecc-CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        333 NIG--GYIVGTKNFIDTIRSYA---AGF--------------IFTT-SLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       333 ~~G--G~l~~~~~~~~~l~~~~---~~~--------------~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      +++  |++++++++++.+....   ..+              .+.. +.+...++++.++++.+.+.+++++++++++++
T Consensus       225 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  304 (393)
T 1vjo_A          225 CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNV  304 (393)
T ss_dssp             SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            644  99999999988875321   111              1122 567888888899998765556788999999999


Q ss_pred             HHHHHHHHhCCCccccCCC----cEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEe-CCCCCHHH
Q psy16848        393 AYLRNELIQIGFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAP-TPFHTREM  466 (514)
Q Consensus       393 ~~l~~~L~~~g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~  466 (514)
                      +++.+.|++.|+++..+.+    .++.+.++...+..++.+.|. ++ ||.+.++..+.   .++++|+++ +...++++
T Consensus       305 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~v~~g~~~~---~~~~iRis~~~~~~~~~~  380 (393)
T 1vjo_A          305 EYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLL-NEHNIEVGGGLGEL---AGKVWRVGLMGFNSRKES  380 (393)
T ss_dssp             HHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHH-HHHCEECEECCGGG---TTTEEEEECCGGGCSHHH
T ss_pred             HHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCCHHHHHHHHH-hhCCEEEecCcccc---CCCEEEEeCCccCChHHH
Confidence            9999999988887765543    467788765556788999996 66 99999887533   357999995 44567788


Q ss_pred             HHHHHHHHHHHH
Q psy16848        467 IDKFVTDLLAVW  478 (514)
Q Consensus       467 id~~~~~l~~~l  478 (514)
                      +++++++|++++
T Consensus       381 i~~~~~~l~~~l  392 (393)
T 1vjo_A          381 VDQLIPALEQVL  392 (393)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.97  E-value=8.6e-28  Score=243.33  Aligned_cols=321  Identities=17%  Similarity=0.133  Sum_probs=235.8

Q ss_pred             eeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhH------cCC--CcEEEEeccccccc
Q psy16848         20 TCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKL------HQK--EAGLVFTSCYVAND   89 (514)
Q Consensus        20 ~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~--~~~i~~~sGt~a~~   89 (514)
                      .+||.++.+  ..+|++.+++.+++++.+.....+    +.... .++++.++++      ++.  +..+++++|++++.
T Consensus        32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y----~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~  106 (369)
T 3cq5_A           32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRY----PERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ  106 (369)
T ss_dssp             SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSC----CCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccC----CCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence            388977665  247899999999998742211111    11111 3566666665      332  23454555567788


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  +||.|+++.+.|.+....++..|.+++.++.++.                                    
T Consensus       107 ~~~~~l~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~------------------------------------  148 (369)
T 3cq5_A          107 QLLQAFGG--PGRTALGFQPSYSMHPILAKGTHTEFIAVSRGAD------------------------------------  148 (369)
T ss_dssp             HHHHHHCS--TTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTT------------------------------------
T ss_pred             HHHHHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcC------------------------------------
Confidence            88888865  9999999999999998888777777665543110                                    


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                .                                             ..|.+.++
T Consensus       149 --------------------------~---------------------------------------------~~d~~~l~  157 (369)
T 3cq5_A          149 --------------------------F---------------------------------------------RIDMDVAL  157 (369)
T ss_dssp             --------------------------S---------------------------------------------SCCHHHHH
T ss_pred             --------------------------C---------------------------------------------CCCHHHHH
Confidence                                      0                                             01455566


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccC-ceEEEcCCc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN-MDIISGTLG  328 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~-~di~~~S~s  328 (514)
                      +.+++.   +++++++++++||||.++|++++.++|+.+++++|+||+|+.+..+   .+...... ..+ .+++++|+|
T Consensus       158 ~~i~~~---~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~---~~~~~~~~-~~~~~~i~~~s~s  230 (369)
T 3cq5_A          158 EEIRAK---QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS---PSATTLLE-KYPTKLVVSRTMS  230 (369)
T ss_dssp             HHHHHH---CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS---CCGGGGTT-TCTTTEEEEEESS
T ss_pred             HHhhcc---CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCC---cchHHHHh-hCCCCEEEEEech
Confidence            665531   4688899999999999999999999999999999999999955432   11222211 124 679999999


Q ss_pred             ccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        329 KAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       329 K~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      |++|.+|   |++++++++++.+......+    +.++..++++.++++.  .+++++.+++++++++++.+.|++.|+.
T Consensus       231 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~  304 (369)
T 3cq5_A          231 KAFDFAGGRLGYFVANPAFIDAVMLVRLPY----HLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYA  304 (369)
T ss_dssp             STTSCGGGCCEEEEECTHHHHHHHTTSCTT----CSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HhcCCcccceEEEEeCHHHHHHHHHcCCCC----CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            9998657   99999999998887655443    5788888888888874  2456778889999999999999887887


Q ss_pred             cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      +.++.++++++.++  .+..++.+.|. ++||.+.++.      .++++|++++   +++|+++++++|+++++
T Consensus       305 ~~~~~~~~~~~~~~--~~~~~l~~~l~-~~gi~v~~~~------~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          305 VVPSESNFVFFGDF--SDQHAAWQAFL-DRGVLIRDVG------IAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             EECCSSSEEEEECC--SSHHHHHHHHH-HTTEECBCCS------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             ECCCCCeEEEEECC--CCHHHHHHHHH-HCCEEEEECC------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            77667778888876  34678889995 9999998761      2468999998   79999999999998764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.97  E-value=1.3e-28  Score=256.31  Aligned_cols=356  Identities=16%  Similarity=0.115  Sum_probs=240.5

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~a~   88 (514)
                      .+|+.++||.++   .+++  ||++.+++.+++++..+ .    ...+..+...+++++++++++.+ .++|++||++|+
T Consensus        46 ~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~----~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~  120 (452)
T 3n5m_A           46 IQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-F----PMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEAN  120 (452)
T ss_dssp             TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-C----CTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHH
T ss_pred             CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-c----ccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHH
Confidence            377889999765   6665  69999999999987543 1    12245688899999999998642 377788999999


Q ss_pred             ccchhhcccc---C---CCceEEecCcc-chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         89 DSTLFTLGKM---I---PGLHYISDAGN-HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        89 ~~~l~~l~~~---~---~gd~v~~~~~~-h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      ..++..+...   .   +++.|++.++. |.....+....+........             ....+.....        
T Consensus       121 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--------  179 (452)
T 3n5m_A          121 ETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQY-------------EPFASGFLHV--------  179 (452)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTT-------------CCCCSCEEEE--------
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhcccc-------------CCCCCCCeEe--------
Confidence            9999887521   2   56666655554 44444444433322110000             0000000000        


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                 +.+..            ..++
T Consensus       180 -----------------------------------------------------------~~~~~------------~~~~  188 (452)
T 3n5m_A          180 -----------------------------------------------------------TPPDC------------YRMP  188 (452)
T ss_dssp             -----------------------------------------------------------CCCCT------------TTST
T ss_pred             -----------------------------------------------------------CCCcc------------ccCc
Confidence                                                                       00000            0011


Q ss_pred             CCC---------hhHHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCC
Q psy16848        242 HND---------VNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEH  306 (514)
Q Consensus       242 ~~d---------~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~  306 (514)
                      .+|         ++.+++.+++...+++++|+++++ +| +|.+.+    +++|+++|++||++||+||+|+ +|..|..
T Consensus       189 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~  267 (452)
T 3n5m_A          189 GIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKA  267 (452)
T ss_dssp             TTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             cCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCccccc
Confidence            223         778888887333356889999999 99 998886    9999999999999999999999 6555432


Q ss_pred             CCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHh---hcC-ceEeccCCcHHHHHHHHHHHHHhhh
Q psy16848        307 GAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRS---YAA-GFIFTTSLPPTVLAGAREAIRILSS  378 (514)
Q Consensus       307 ~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~---~~~-~~~~~~~~~~~~~~a~~~~l~~~~~  378 (514)
                      +  ..+..+.  .+|++  ||||++++ |    |++++++++++.+..   ... ....+++.+++.++++.++++.+.+
T Consensus       268 ~--~~~~~~~--~~di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~  340 (452)
T 3n5m_A          268 F--GFMNYDV--KPDII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN  340 (452)
T ss_dssp             S--GGGGTTC--CCSEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred             c--hhhhcCC--CCCEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh
Confidence            1  1233443  67888  78999987 6    999999999888753   111 1223557899999999999997754


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhC--CC---ccccCCCcEEEEEeCCC---------ccHHHHHHHHHHhCCeEEecccC
Q psy16848        379 QEGVELRAKHQDIVAYLRNELIQI--GF---PVEHTPSHIIPIKIGNP---------ALNTKICDMLLKEKGHYVQPINY  444 (514)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~L~~~--g~---~~~~~~~~~~~i~l~~~---------~~~~~~~~~Ll~~~GI~v~~~~~  444 (514)
                      +.   ..++++++.+++++.|+++  ++   ....+.+.++.+.+...         ....++++.|+ ++||.+.++..
T Consensus       341 ~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~  416 (452)
T 3n5m_A          341 EN---LIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACK-EKGLIIGRNGM  416 (452)
T ss_dssp             TT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHH-HTTEECEECTT
T ss_pred             cc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHH-HCCcEEeecCc
Confidence            44   5667777777777777654  22   23345677777766321         11357888886 89999998876


Q ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       445 ~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +. +...+++|++++..+|++++++++++|++++++
T Consensus       417 ~~-~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          417 TT-AGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             SS-TTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             cc-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            43 445789999999999999999999999998764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.97  E-value=3.2e-28  Score=248.19  Aligned_cols=335  Identities=12%  Similarity=0.050  Sum_probs=240.2

Q ss_pred             ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc
Q psy16848         18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l   95 (514)
                      ..+.|..+. ...+|++.+++.+++..    ..    .....+...++++++++++|.+  ..++++|||+|+..++.++
T Consensus         9 ~~yl~~~~~-~~~~~~v~~a~~~~~~~----~~----~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~   79 (392)
T 2z9v_A            9 PVITLTAGP-VNAYPEVLRGLGRTVLY----DY----DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL   79 (392)
T ss_dssp             CSEECSSSC-CCCCHHHHHHTTSCCCC----TT----SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH
T ss_pred             cceeecCCC-cCCCHHHHHHHhccccc----cc----cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh
Confidence            356666542 33467887777665432    11    1123456789999999999875  5666678888999999888


Q ss_pred             cccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         96 GKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        96 ~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      ..  +||.|+++.++|.+..  ..++..|.+++.++.++                                         
T Consensus        80 ~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-----------------------------------------  116 (392)
T 2z9v_A           80 IS--PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY-----------------------------------------  116 (392)
T ss_dssp             CC--TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-----------------------------------------
T ss_pred             cC--CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-----------------------------------------
Confidence            65  9999999999998752  12222344443332210                                         


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                            .+                                            ..|.+.+++.++
T Consensus       117 ----------------------~~--------------------------------------------~~d~~~l~~~l~  130 (392)
T 2z9v_A          117 ----------------------NE--------------------------------------------AIDPQAVADMLK  130 (392)
T ss_dssp             ----------------------TS--------------------------------------------CCCHHHHHHHHH
T ss_pred             ----------------------CC--------------------------------------------CCCHHHHHHHHh
Confidence                                  00                                            125666666665


Q ss_pred             hccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-c
Q psy16848        254 NMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-G  332 (514)
Q Consensus       254 ~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g  332 (514)
                      +  ++++++|++++++||||.++|+++|.++|++||+++|+|++|+++...     + +..  ..++|++++|+||++ +
T Consensus       131 ~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~-~~~--~~~~d~~~~s~sK~~~~  200 (392)
T 2z9v_A          131 A--HPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMK-----T-HPE--DCKADIYVTGPNKCLGA  200 (392)
T ss_dssp             H--CTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBS-----C-CGG--GGTCSEEEECSSSTTCC
T ss_pred             c--CCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcc-----c-ccc--cccceEEEecCcccccC
Confidence            4  245789999999999999999999999999999999999999865421     1 111  236799999999976 4


Q ss_pred             CCC-eEEEecHHHHHHHHhhc------------------CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        333 NIG-GYIVGTKNFIDTIRSYA------------------AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       333 ~~G-G~l~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                      +.| |++++++++++.++...                  .......+.+...++++.++++.+.+.++++++++++++++
T Consensus       201 ~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  280 (392)
T 2z9v_A          201 PPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAK  280 (392)
T ss_dssp             CSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            456 99999999988886421                  00111234566777777788887654457788999999999


Q ss_pred             HHHHHHHhCCCcccc-C----CCcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCC-CCCHHH
Q psy16848        394 YLRNELIQIGFPVEH-T----PSHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTP-FHTREM  466 (514)
Q Consensus       394 ~l~~~L~~~g~~~~~-~----~~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~  466 (514)
                      ++.+.|+++|+.+.. +    .+.++++.+++..+..++.+.|. ++ ||.+.++..+   ...+++|+++.. .+++++
T Consensus       281 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~gi~v~~g~~~---~~~~~lRi~~~~~~~~~~~  356 (392)
T 2z9v_A          281 AMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAAR-ARYGVVFSSGRGE---TLGKLTRIGHMGPTAQPIY  356 (392)
T ss_dssp             HHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHH-HHHCEECEECCGG---GTTTEEEEECCGGGCSHHH
T ss_pred             HHHHHHHHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHH-hcCCEEEecCCCC---CCCCeEEEeCcccccCHHH
Confidence            999999988777655 3    25577888875556788999996 66 9999887642   235799999633 689999


Q ss_pred             HHHHHHHHHHHHHHcCCc
Q psy16848        467 IDKFVTDLLAVWKSLDLP  484 (514)
Q Consensus       467 id~~~~~l~~~l~~~~~~  484 (514)
                      +++++++|++++++++..
T Consensus       357 i~~~~~~l~~~~~~~~~~  374 (392)
T 2z9v_A          357 AIAALTALGGAMNAAGRK  374 (392)
T ss_dssp             HHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999988653

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.97  E-value=2.4e-28  Score=251.00  Aligned_cols=303  Identities=17%  Similarity=0.152  Sum_probs=227.8

Q ss_pred             chHHHHHHHHHHhHcCCCc--EE-EEeccccccccchhhccccCCCceEEecCccchh--hhhhhhcCCCCeeeccCCCh
Q psy16848         59 SLFHEKLEEDVAKLHQKEA--GL-VFTSCYVANDSTLFTLGKMIPGLHYISDAGNHAS--MIQGIRNSSAPKIIYRHNDV  133 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~--~i-~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~--~~~~~~~~~~~~~~~~~~d~  133 (514)
                      .+..+++++++++++|.+.  .+ +++|||+|+..++.++..  +||.|+++.+.|.+  ....++..|.+++.++.+..
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  120 (416)
T 3isl_A           43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIE--PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG  120 (416)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcC--CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCC
Confidence            5678899999999999764  33 456778999999988865  99999999999987  44455555665554433100


Q ss_pred             HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848        134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  213 (514)
Q Consensus       134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~  213 (514)
                                                                                     +                
T Consensus       121 ---------------------------------------------------------------~----------------  121 (416)
T 3isl_A          121 ---------------------------------------------------------------T----------------  121 (416)
T ss_dssp             ---------------------------------------------------------------C----------------
T ss_pred             ---------------------------------------------------------------C----------------
Confidence                                                                           0                


Q ss_pred             hccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEE
Q psy16848        214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF  293 (514)
Q Consensus       214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li  293 (514)
                                                  ..|.+.+++.+++   +++++|++++++||+|.+.|+++|.++|++||+++|
T Consensus       122 ----------------------------~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li  170 (416)
T 3isl_A          122 ----------------------------VFDPEDIIREIKK---VKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFI  170 (416)
T ss_dssp             ----------------------------CCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEE
T ss_pred             ----------------------------CCCHHHHHHHHhh---CCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEE
Confidence                                        0155666666653   247899999999999999999999999999999999


Q ss_pred             EeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC-eEEEecHHHHHHHHhhc-------------------
Q psy16848        294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG-GYIVGTKNFIDTIRSYA-------------------  352 (514)
Q Consensus       294 ~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G-G~l~~~~~~~~~l~~~~-------------------  352 (514)
                      +|++|+.+...     + +..  ..++|++++|+||++ ++.| |+++.++++++.+....                   
T Consensus       171 ~D~a~~~~~~~-----~-~~~--~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~  242 (416)
T 3isl_A          171 VDAVATIGGCE-----V-KVD--EWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNR  242 (416)
T ss_dssp             EECTTTTTTSC-----C-CTT--TTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CC
T ss_pred             EECCccccCCC-----c-chh--hcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCC
Confidence            99999865431     0 111  236899999999985 5556 99999999988887432                   


Q ss_pred             ----------------CceE-eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC----C
Q psy16848        353 ----------------AGFI-FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP----S  411 (514)
Q Consensus       353 ----------------~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~  411 (514)
                                      .... ...+.+...+.++.++++.....++++++++++++++++.+.|++.|+.+..+.    +
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  322 (416)
T 3isl_A          243 PITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP  322 (416)
T ss_dssp             CCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCT
T ss_pred             CCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCC
Confidence                            0111 122456777778888888775555788999999999999999999888776553    4


Q ss_pred             cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHHHHcCCc
Q psy16848        412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM-IDKFVTDLLAVWKSLDLP  484 (514)
Q Consensus       412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~-id~~~~~l~~~l~~~~~~  484 (514)
                      .++.+.+++..+..++.+.|+++.||.++++..   +..++++|++++...+++| +++++++|++++++++..
T Consensus       323 ~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~---~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~~  393 (416)
T 3isl_A          323 VVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG---PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAG  393 (416)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS---TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC---CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence            577888876567889999996334999997763   2346799999966666666 999999999999988643

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.97  E-value=1.4e-28  Score=246.96  Aligned_cols=317  Identities=10%  Similarity=0.018  Sum_probs=230.4

Q ss_pred             CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccccCCCceE
Q psy16848         27 QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGKMIPGLHY  104 (514)
Q Consensus        27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~~~~gd~v  104 (514)
                      .+..+|++.+++.+++..    .    ......+...++++++++++|.+  ..++++|||+|+..++.++..  +||.|
T Consensus         9 p~~~~~~v~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~--~gd~v   78 (352)
T 1iug_A            9 PVRLHPKALEALARPQLH----H----RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--PGERV   78 (352)
T ss_dssp             SCCCCHHHHHHHHSCCCC----T----TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--TTCEE
T ss_pred             CCCCCHHHHHHhccCCCC----c----cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC--CCCeE
Confidence            334478888877765531    1    11122456789999999999976  456667889999999988865  99999


Q ss_pred             EecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848        105 ISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  182 (514)
Q Consensus       105 ~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (514)
                      +++.+.|.+..  ..++..|.+++.++.++ +                                                
T Consensus        79 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------------------  109 (352)
T 1iug_A           79 LVPVYGKFSERFYEIALEAGLVVERLDYPY-G------------------------------------------------  109 (352)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEEECCT-T------------------------------------------------
T ss_pred             EEEeCCchhHHHHHHHHHcCCceEEEeCCC-C------------------------------------------------
Confidence            99999998864  22233455444333210 0                                                


Q ss_pred             eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceE
Q psy16848        183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKL  262 (514)
Q Consensus       183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~  262 (514)
                                    +                                            ..|.+.+++       +++++
T Consensus       110 --------------~--------------------------------------------~~d~~~l~~-------~~~~~  124 (352)
T 1iug_A          110 --------------D--------------------------------------------TPRPEDVAK-------EGYAG  124 (352)
T ss_dssp             --------------C--------------------------------------------CCCTTTSCC-------SSCSE
T ss_pred             --------------C--------------------------------------------CCCHHHHhc-------cCCcE
Confidence                          0                                            002222211       45789


Q ss_pred             EEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC-eEE
Q psy16848        263 VAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG-GYI  338 (514)
Q Consensus       263 vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G-G~l  338 (514)
                      |++++++||||.+.|+++|.++|++|  |+++|+|++|+++...     + +..  ..++|++++|+||++ ++.| |++
T Consensus       125 v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~-----~-~~~--~~~~d~~~~s~~K~~~~~~g~G~~  196 (352)
T 1iug_A          125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGE-----V-ALE--AMGVDAAASGSQKGLMCPPGLGFV  196 (352)
T ss_dssp             EEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBC-----C-CSG--GGTCSEEEEESSSTTCCCSCEEEE
T ss_pred             EEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcc-----e-ecc--ccCeeEEEecCcccccCCCceeEE
Confidence            99999999999999999999999999  9999999999865421     1 111  235799999999965 5557 999


Q ss_pred             EecHHHHHH---------HH----hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        339 VGTKNFIDT---------IR----SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       339 ~~~~~~~~~---------l~----~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      ++++++++.         +.    ...... +..+.+...+.++.++++.+.+. +++++++++++++++.+.|++.|+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~  274 (352)
T 1iug_A          197 ALSPRALERLKPRGYYLDLARELKAQKEGE-SAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLR  274 (352)
T ss_dssp             EECHHHHHTCCCCSSTTCHHHHHHHHTTTC-CSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             EECHHHHHHhhCCCceeeHHHHHhhcccCC-CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            999887654         21    111111 13356777788888888876444 7889999999999999999988877


Q ss_pred             cccC--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        406 VEHT--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       406 ~~~~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +..+  .+.++++.+++..+..++.+.|. ++||.+.++..+   ...+++|++++..++++++++++++|+++++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          275 PVPKRFSPAVAAFYLPEGVPYARVKEAFA-QRGAVIAGGQGP---LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             ESCSSBCTTCEEEECCTTCCHHHHHHHHH-TTTEECEECCGG---GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEEcCCCCCHHHHHHHHH-HCCEEEEeCCCc---cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence            7655  45688888875556788999996 889999987632   235799999998889999999999999998876

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.97  E-value=1.4e-28  Score=248.51  Aligned_cols=327  Identities=13%  Similarity=0.039  Sum_probs=238.4

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~   91 (514)
                      +|+.++||.++..  ..+|++.+++.+++... ..       ++. ....++++.++++++.+  ..+++++|++++..+
T Consensus        22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~-------y~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~   92 (364)
T 1lc5_A           22 SPDQLLDFSANINPLGMPVSVKRALIDNLDCI-ER-------YPD-ADYFHLHQALARHHQVPASWILAGNGETESIFTV   92 (364)
T ss_dssp             CGGGSEECSSCCCTTCCCHHHHHHHHHTGGGG-GS-------CCC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred             CccceEEeccccCCCCCCHHHHHHHHHHHHHh-hc-------CCC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence            5677899976542  24788999988877541 11       111 22578899999999864  456566677888888


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++    +||.|+++.+.|.+....++..|.+++.++.+..                                      
T Consensus        93 ~~~~----~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~--------------------------------------  130 (364)
T 1lc5_A           93 ASGL----KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREA--------------------------------------  130 (364)
T ss_dssp             HHHH----CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGG--------------------------------------
T ss_pred             HHHc----CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcc--------------------------------------
Confidence            8776    5699999999999988887777777665544210                                      


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                             ++++.+++.
T Consensus       131 -----------------------------------------------------------------------~~~~~l~~~  139 (364)
T 1lc5_A          131 -----------------------------------------------------------------------DGWQLTDAI  139 (364)
T ss_dssp             -----------------------------------------------------------------------GTTCCCTTH
T ss_pred             -----------------------------------------------------------------------cccchhHHH
Confidence                                                                                   011101112


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      +++ .+++++++++++|+||||.++|   +++|.++|++||+++|+||+|+.+..+  +.+..+... ..+.+++++|+|
T Consensus       140 ~~~-~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~s  215 (364)
T 1lc5_A          140 LEA-LTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALK-DNPHIWVLRSLT  215 (364)
T ss_dssp             HHH-CCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCT-TCTTEEEEEEST
T ss_pred             HHh-ccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC--ccchhhHhc-cCCCEEEEEECc
Confidence            222 2355788999999999999999   899999999999999999999954432  212222212 236789999999


Q ss_pred             ccccCCC---eEEE-ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        329 KAFGNIG---GYIV-GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       329 K~lg~~G---G~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      |++|.+|   ||++ +++++++.+......    .+.+++.+.++.++++.  ..++++.+++++++++++.+.|+++ +
T Consensus       216 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~  289 (364)
T 1lc5_A          216 KFYAIPGLRLGYLVNSDDAAMARMRRQQMP----WSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPL  289 (364)
T ss_dssp             TTTTCTTTCCEEEECCCHHHHHHHHHHSCT----TCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             hhhcCCccceEEEEECCHHHHHHHHHhCCC----CCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9998656   9999 999999888776543    36788888888887764  3467788889999999999999987 7


Q ss_pred             CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        404 FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       404 ~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.+.++.+.++++.+++.  ..++.+.|. ++||.+.++..+. ..+.+++|++++   +++++++++++|+++++++
T Consensus       290 ~~~~~~~g~~~~~~~~~~--~~~l~~~l~-~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          290 LTVYPGRANYLLLRCERE--DIDLQRRLL-TQRILIRSCANYP-GLDSRYYRVAIR---SAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             EEECCCSSSEEEEEESCT--TCCHHHHHH-TTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHC---
T ss_pred             CEECCCCCeEEEEECCCc--HHHHHHHHH-HCCcEEeeCcccC-CCCCCEEEEEeC---CHHHHHHHHHHHHHHhhcc
Confidence            777666777888887642  457888886 8899999987643 234679999987   6899999999999987664

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.97  E-value=5e-29  Score=256.88  Aligned_cols=342  Identities=17%  Similarity=0.153  Sum_probs=242.7

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHH--H-hCCCCC-CcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccc
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALE--K-FGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~   89 (514)
                      ++..++|+.+.. ..+|++.+++.+++.  . ++.... .+...++..+..++++++++++++.+  .+++++||++|+.
T Consensus        21 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~   99 (423)
T 3lvm_A           21 KLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN   99 (423)
T ss_dssp             CSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred             CCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHH
Confidence            344567776554 447899999988877  2 332221 22222334577789999999999876  6788888899999


Q ss_pred             cchhhccc--cCCCceEEecCccchhhhhhhhc---CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         90 STLFTLGK--MIPGLHYISDAGNHASMIQGIRN---SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        90 ~~l~~l~~--~~~gd~v~~~~~~h~~~~~~~~~---~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      .++.++..  .++||.|+++.++|.+...++..   .|.+++.++.+.                                
T Consensus       100 ~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--------------------------------  147 (423)
T 3lvm_A          100 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--------------------------------  147 (423)
T ss_dssp             HHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--------------------------------
T ss_pred             HHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--------------------------------
Confidence            99887752  23799999999999998765532   244444332210                                


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                     .+                                            ..|
T Consensus       148 -------------------------------~~--------------------------------------------~~d  152 (423)
T 3lvm_A          148 -------------------------------NG--------------------------------------------IID  152 (423)
T ss_dssp             -------------------------------TS--------------------------------------------CCC
T ss_pred             -------------------------------CC--------------------------------------------ccC
Confidence                                           00                                            014


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      .+.+++.+    +++++++++++++||+|.++|+++|.++|++||+++|+||+|+.+...      ....  ..++|+++
T Consensus       153 ~~~l~~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~------~~~~--~~~~di~~  220 (423)
T 3lvm_A          153 LKELEAAM----RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP------IDLS--QLKVDLMS  220 (423)
T ss_dssp             HHHHHHHC----CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC------CCTT--TSCCSEEE
T ss_pred             HHHHHHhc----CCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC------cChh--hcCCCEEE
Confidence            44444444    346899999999999999999999999999999999999999865431      1112  23689999


Q ss_pred             cCCcccccCCC-eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        325 GTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       325 ~S~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      +|+||.+|+.| |+++++++..+.+.....+.     ....+.+...++++.++++.+.. .+++++++++++++++.+.
T Consensus       221 ~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~  299 (423)
T 3lvm_A          221 FSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLWNG  299 (423)
T ss_dssp             EESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             echHHhcCCCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            99999888876 99998877665554432210     01234567777777788876643 3778999999999999999


Q ss_pred             HHhC-CCccccCCC----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEE
Q psy16848        399 LIQI-GFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLA  457 (514)
Q Consensus       399 L~~~-g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~  457 (514)
                      |+++ ++.+..+.+    .++.+.++. .+..++.+.|. +  |.+.++..|....                ..+++|++
T Consensus       300 L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  375 (423)
T 3lvm_A          300 IKDIEEVYLNGDLEHGAPNILNVSFNY-VEGESLIMALK-D--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS  375 (423)
T ss_dssp             HTTSTTEEEESCSTTBCTTEEEEEETT-SCHHHHHHHTT-T--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEE
T ss_pred             HhcCCCEEEeCCccccCCCeEEEEeCC-CCHHHHHHHHh-h--heeccCccccCCCccccHHHHHhCCCccccCceEEEE
Confidence            9888 777665443    467777743 45678888874 5  8888776543210                13799999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      ++..++++++++++++|++++++++
T Consensus       376 ~~~~~t~e~i~~~~~~l~~~~~~~~  400 (423)
T 3lvm_A          376 LGRFTTEEEIDYTIELVRKSIGRLR  400 (423)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.96  E-value=3.1e-28  Score=253.96  Aligned_cols=343  Identities=15%  Similarity=0.106  Sum_probs=236.5

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.++||.++   ..++  ||++.+++.+++++..+.++   ...+..+...+++++++++++  .++++|++||++|+
T Consensus        48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~  124 (459)
T 4a6r_A           48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNT---FFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESV  124 (459)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCT---TSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred             CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHH
Confidence            67888898654   4454  79999999999998553222   223456888999999999984  56788889999999


Q ss_pred             ccchhhcccc------CCCceEEec-CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         89 DSTLFTLGKM------IPGLHYISD-AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        89 ~~~l~~l~~~------~~gd~v~~~-~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      ..++..+...      .+++.|++. +.+|.....+....+.......                                
T Consensus       125 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~--------------------------------  172 (459)
T 4a6r_A          125 DTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQ--------------------------------  172 (459)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC----------------------------------
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccc--------------------------------
Confidence            9999887531      145655554 4445444444443332211000                                


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                          +......+..++
T Consensus       173 --------------------------------------------------------------------~~~~~~~~~~~~  184 (459)
T 4a6r_A          173 --------------------------------------------------------------------GDLPIPGMAHIE  184 (459)
T ss_dssp             ---------------------------------------------------------------------CCSCSSEEEEC
T ss_pred             --------------------------------------------------------------------cCCCCCCCEEeC
Confidence                                                                                000000111111


Q ss_pred             --C----C---C--------hhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-
Q psy16848        242 --H----N---D--------VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-  299 (514)
Q Consensus       242 --~----~---d--------~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-  299 (514)
                        .    +   |        .+.+++.+.+...+++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ 
T Consensus       185 ~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g  264 (459)
T 4a6r_A          185 QPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICG  264 (459)
T ss_dssp             CCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             CCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence              1    1   1        567777776543356789999999999999876    9999999999999999999998 


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHh---hcCceEeccCCcHHHHHHHHHHH
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRS---YAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +|..|..+  ..+..+.  .+|++  +|||++++.|   |++++++++++.+..   .....  +++.+++.++++.++|
T Consensus       265 ~gr~G~~~--~~~~~~~--~pdi~--t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~--t~~~~~~~~aaa~aal  336 (459)
T 4a6r_A          265 FGRTGEWF--GHQHFGF--QPDLF--TAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGF--TYSGHPVCAAVAHANV  336 (459)
T ss_dssp             TTTTSSSS--HHHHHTC--CCSEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHH--HHCSCHHHHHHHHHHH
T ss_pred             CCcccccc--hHhhcCC--CCCee--ehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCC--CCCCCHHHHHHHHHHH
Confidence            55554321  1223333  67888  7889998744   999999999998873   22222  4578999999999999


Q ss_pred             HHhhhchHHHHHHHHH-HHHHHHHHHH-HhC----CCccccCCCcEEEEEeCCCc-----------cHHHHHHHHHHhCC
Q psy16848        374 RILSSQEGVELRAKHQ-DIVAYLRNEL-IQI----GFPVEHTPSHIIPIKIGNPA-----------LNTKICDMLLKEKG  436 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~-~~~~~l~~~L-~~~----g~~~~~~~~~~~~i~l~~~~-----------~~~~~~~~Ll~~~G  436 (514)
                      +.+.++.   ..++++ ++.+++++.| +.+    .+....+.+.++.+.+....           ...++++.|+ ++|
T Consensus       337 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G  412 (459)
T 4a6r_A          337 AALRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF-RNN  412 (459)
T ss_dssp             HHHHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHH-HTT
T ss_pred             HHHhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHH-HCC
Confidence            9775444   555565 6666666666 332    23334556778888775421           1567888886 889


Q ss_pred             eEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        437 HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       437 I~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      |.+.++.        +++|++++..+|++++++++++|+++++++
T Consensus       413 v~v~~~g--------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  449 (459)
T 4a6r_A          413 LIMRACG--------DHIVSAPPLVMTRAEVDEMLAVAERCLEEF  449 (459)
T ss_dssp             EECEEET--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9998642        589999999999999999999999998765

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.96  E-value=1.6e-28  Score=251.23  Aligned_cols=337  Identities=12%  Similarity=0.107  Sum_probs=236.7

Q ss_pred             CceeeecccCCC--CCChhHHHHHHHHHHHhCCC-CCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccc
Q psy16848         17 NRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTG-AGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVAND   89 (514)
Q Consensus        17 g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~   89 (514)
                      ++.++||.++..  ..+|.+.+++.+++++.+.. ...+....|..++.+++++++.+.+|    .+..+++++|++|+.
T Consensus        34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~  113 (398)
T 3ele_A           34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLS  113 (398)
T ss_dssp             GGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred             CCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHH
Confidence            467899976533  24789999999999863210 11122233556677777777776655    245666677788999


Q ss_pred             cchhhccccCCC-ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         90 STLFTLGKMIPG-LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        90 ~~l~~l~~~~~g-d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .++.++..  +| |.|+++.+.|.+....++..|.+++.++.++ +                                  
T Consensus       114 ~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~----------------------------------  156 (398)
T 3ele_A          114 ICFRALTS--DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-E----------------------------------  156 (398)
T ss_dssp             HHHHHHCC--STTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-T----------------------------------
T ss_pred             HHHHHHcC--CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-c----------------------------------
Confidence            99988866  99 9999999999998887777777766554320 0                                  


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                +.                                             .-|.+.+
T Consensus       157 --------------------------~~---------------------------------------------~~d~~~l  165 (398)
T 3ele_A          157 --------------------------HF---------------------------------------------QIDFDAL  165 (398)
T ss_dssp             --------------------------TS---------------------------------------------SCCHHHH
T ss_pred             --------------------------CC---------------------------------------------cCCHHHH
Confidence                                      00                                             0033333


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHH------cCCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQ------HGALTFVDEVHAVGLYGEHGAGIGERDGQLHN  319 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~------~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~  319 (514)
                      ++.+    .++++++++++|+||||.+++   +++|.++|++      ||+++|+||+|+.+..+....+.  ... ..+
T Consensus       166 ~~~l----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~--~~~-~~~  238 (398)
T 3ele_A          166 EERI----NAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF--VTK-YYD  238 (398)
T ss_dssp             HHTC----CTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC--GGG-TCS
T ss_pred             HHHh----CcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC--hHh-hcC
Confidence            3333    456899999999999999999   7888899999      99999999999954432211111  111 235


Q ss_pred             ceEEEcCCcccccCCC---eEEEecHHHH------HHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGTKNFI------DTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                      .+++++|+||.+|.+|   ||++++++++      +.+....... ...+.+...+.++...++.   ..   .++++++
T Consensus       239 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~---~~---~~~~~~~  311 (398)
T 3ele_A          239 NTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRAL-GYVCAPSLFQKMIVKCQGA---TG---DINAYKE  311 (398)
T ss_dssp             SEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHT-TCCCSCHHHHHHHTTCTTC---CC---CHHHHHH
T ss_pred             CeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhc-cccCCCHHHHHHHHHHhcC---HH---HHHHHHH
Confidence            7899999999998657   9999987643      3332221111 0224566666666655542   22   4677888


Q ss_pred             HHHHHHHHHHhCCCccccCCCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        391 IVAYLRNELIQIGFPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       391 ~~~~l~~~L~~~g~~~~~~~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      +++++.+.|+++++.+..+.+++ +++.++.. +..++.+.| .++||.+.++..|..   ++++|++++  ++++++++
T Consensus       312 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~~gi~v~~g~~~~~---~~~iRis~~--~~~e~i~~  384 (398)
T 3ele_A          312 NRDLLYEGLTRIGYHCFKPDGAFYMFVKALED-DSNAFCEKA-KEEDVLIVAADGFGC---PGWVRISYC--VDREMIKH  384 (398)
T ss_dssp             HHHHHHHHHHHHTCCEECCSBSSEEEEECSSS-CHHHHHHHH-HTTTEECEESGGGTC---TTEEEEECC--SCHHHHHH
T ss_pred             HHHHHHHHHHHcCCeecCCCeeEEEEEEcCCC-CHHHHHHHH-HHCCEEEeCccccCC---CCeEEEEec--CCHHHHHH
Confidence            99999999998888877776664 77887653 577888888 499999999886543   469999997  69999999


Q ss_pred             HHHHHHHHHHHcC
Q psy16848        470 FVTDLLAVWKSLD  482 (514)
Q Consensus       470 ~~~~l~~~l~~~~  482 (514)
                      ++++|++++++++
T Consensus       385 ~l~~l~~~l~~~~  397 (398)
T 3ele_A          385 SMPAFEKIYKKYN  397 (398)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.96  E-value=1.6e-28  Score=254.33  Aligned_cols=369  Identities=14%  Similarity=0.075  Sum_probs=239.8

Q ss_pred             CCceeeecccCCC---C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQY---K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~---~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|++|+|+.+.-+   +  +||++.+++.+|+++.....   ..+....+...++.++|+++..  .++++|++|||+|+
T Consensus        65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~---~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~  141 (473)
T 4e3q_A           65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH---AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEAN  141 (473)
T ss_dssp             TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC---CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHH
T ss_pred             CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc---ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHH
Confidence            5666666643222   2  37999999999999854321   1122235777889999999974  56789999999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      +.|++.....                                        .-.+..+++.++|.+++.||..-       
T Consensus       142 e~AiKlAr~~----------------------------------------~~~~g~~~r~~ii~~~~~yHG~t-------  174 (473)
T 4e3q_A          142 DTMVKMLWFL----------------------------------------HAAEGKPQKRKILTRWNAYHGVT-------  174 (473)
T ss_dssp             HHHHHHHHHH----------------------------------------HHHTTCTTCCEEEEETTCCCCSS-------
T ss_pred             HHHHHHHHHH----------------------------------------HHhcCCCCcceEEEeeceECCCc-------
Confidence            9999654320                                        01122345667777777776210       


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                         .|....++...          ...........+.++.++.......+.....+.....+.+
T Consensus       175 -------------------~~a~s~tg~~~----------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l  225 (473)
T 4e3q_A          175 -------------------AVSASMTGKPY----------NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL  225 (473)
T ss_dssp             -------------------HHHHHHSCCGG----------GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHH
T ss_pred             -------------------ccccccccccc----------ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHH
Confidence                               00000000000          0000000000011111111000000000000001123456


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      ++.+.+...+++++|++|+++...|.+.+    +++|+++|++||++||.||+++ +|+.|..+  ..+.+++  .||++
T Consensus       226 ~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~f--a~e~~gv--~PDi~  301 (473)
T 4e3q_A          226 EETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTW--GCVTYDF--TPDAI  301 (473)
T ss_dssp             HHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSC--HHHHTTC--CCSEE
T ss_pred             HHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchh--HHHhcCC--CCChH
Confidence            66666666667899999999999999877    8999999999999999999999 66665433  2345555  89999


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhc-----CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYA-----AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                        +++|.+++.+   |.+++++++.+.+....     ...+++++.+|+.++++.++|+.+.++.   +.++.+++.+++
T Consensus       302 --t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~---l~~~~~~~g~~l  376 (473)
T 4e3q_A          302 --ISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEG---LAENVRRLAPRF  376 (473)
T ss_dssp             --EECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHH
T ss_pred             --HhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcccc---HHHHHHHHHHHH
Confidence              8999997732   88999999888775421     1223366889999999999999987776   677788888888


Q ss_pred             HHHHHhC-CCc---cccCCCcEEEEEeCCC-----------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        396 RNELIQI-GFP---VEHTPSHIIPIKIGNP-----------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       396 ~~~L~~~-g~~---~~~~~~~~~~i~l~~~-----------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      .+.|+++ ..+   -+...|.++.+++...           .....+.+.++ ++|+++.+.        .+.+|+++++
T Consensus       377 ~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~--------g~~i~l~PPL  447 (473)
T 4e3q_A          377 EERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCT-DLGLICRPL--------GQSVVLCPPF  447 (473)
T ss_dssp             HHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECEEE--------TTEEEECCCT
T ss_pred             HHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHH-HCCcEEEec--------CCEEEEeCCC
Confidence            8888775 212   1234566888876321           12456888886 999998753        2479999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHc
Q psy16848        461 FHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+|++|+|+++++++++++++
T Consensus       448 ~it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          448 ILTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998775

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.96  E-value=1.1e-28  Score=250.10  Aligned_cols=333  Identities=17%  Similarity=0.142  Sum_probs=234.4

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCC-CcCcccCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccchhhcc
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTLFTLG   96 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l~~l~   96 (514)
                      |+|+++.. ..+|.+.+++.+++........ .+....+..+..+++++++++++|.+.  ++++++|++|+..++.++.
T Consensus         3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~   81 (382)
T 4hvk_A            3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             eecCCCcC-CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhh
Confidence            45655443 3478999999999986322111 122223346778899999999999753  5666777888988888876


Q ss_pred             ----ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         97 ----KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        97 ----~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                          .  +||.|+++.++|.+...+++..                                                   
T Consensus        82 ~~~~~--~gd~vi~~~~~~~~~~~~~~~~---------------------------------------------------  108 (382)
T 4hvk_A           82 MRNAR--KGKHILVSAVEHMSVINPAKFL---------------------------------------------------  108 (382)
T ss_dssp             HHHGG--GCCEEEEETTCCHHHHHHHHHH---------------------------------------------------
T ss_pred             hhhcC--CCCEEEECCCCcHHHHHHHHHH---------------------------------------------------
Confidence                5  9999999999999987554331                                                   


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-----ChhH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-----DVNH  247 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-----d~~~  247 (514)
                                                                                ...|++++.++.+     |.+.
T Consensus       109 ----------------------------------------------------------~~~g~~~~~v~~~~~~~~d~~~  130 (382)
T 4hvk_A          109 ----------------------------------------------------------QKQGFEVEYIPVGKYGEVDVSF  130 (382)
T ss_dssp             ----------------------------------------------------------HHTTCEEEEECBCTTSCBCHHH
T ss_pred             ----------------------------------------------------------HhcCCEEEEeccCCCCCcCHHH
Confidence                                                                      1123333444321     3444


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +++.+    +++++++++++++||+|.+.|+++|.++|++||+ +|+|++|+.+..        .......++|++++|+
T Consensus       131 l~~~i----~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~--------~~~~~~~~~d~~~~s~  197 (382)
T 4hvk_A          131 IDQKL----RDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI--------EVDVEKIGADMLTISS  197 (382)
T ss_dssp             HHHHC----CTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTB--------CCCHHHHTCSEEEEES
T ss_pred             HHHHh----ccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC--------CCCchhcCCCEEEEeH
Confidence            44444    4568999999999999999999999999999999 999999986543        1111123679999999


Q ss_pred             cccccCCC-eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        328 GKAFGNIG-GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       328 sK~lg~~G-G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      ||++|+.| |+++.+++.  .+.....+.     ....+.+...+.++.++++.. .+++++.+++++++++++.+.|++
T Consensus       198 ~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~  274 (382)
T 4hvk_A          198 NDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLK  274 (382)
T ss_dssp             GGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhc
Confidence            99888766 888877654  222211100     002245667777777777755 357788999999999999999998


Q ss_pred             C-CCccccCCC----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCC----------------CcEEEEEeCC
Q psy16848        402 I-GFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG----------------EEKIRLAPTP  460 (514)
Q Consensus       402 ~-g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~----------------~~~iRl~~~~  460 (514)
                      + ++.+..+..    +++.+.++. .+..++.+.|. ++||.++++..|.....                ++++|++++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~  352 (382)
T 4hvk_A          275 IEESYLNGHPEKRLPNNVNVRFSY-IEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGR  352 (382)
T ss_dssp             STTEEECSCSSSBCTTEEEEEETT-CCHHHHHHHHH-HTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCT
T ss_pred             CCCeEEeCCccccCCCEEEEEECC-CCHHHHHHHHH-HCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCC
Confidence            7 776654432    477777754 45778888885 89999998875443210                5799999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcC
Q psy16848        461 FHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+|++|+++++++|+++++++.
T Consensus       353 ~~t~e~i~~~~~~l~~~~~~~~  374 (382)
T 4hvk_A          353 YNTDEDVDRLLEVLPGVIERLR  374 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.96  E-value=1.6e-28  Score=253.47  Aligned_cols=207  Identities=23%  Similarity=0.301  Sum_probs=161.7

Q ss_pred             CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      .+++++|++++++...|.+.+    +++|+++|++||++||+||+++ +|+.|+.+  ..+.+++  .||++  +++|.+
T Consensus       224 ~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~--a~e~~gv--~PDiv--t~gK~l  297 (456)
T 4atq_A          224 GDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWF--AVDHEGV--VPDII--TMAKGI  297 (456)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGTTC--CCSEE--EECGGG
T ss_pred             CCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccc--cccccCC--CCchh--hhhhcc
Confidence            346899999999999998877    8999999999999999999999 67776543  2445665  89999  889999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CC--
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GF--  404 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~--  404 (514)
                      |+ |   |.+++++++.+.+.....+.  +++.+++.++++.++|+.+.++.   +.++.++..+++.+.|+++  .+  
T Consensus       298 gg-g~P~~av~~~~~i~~~~~~~~~~~--Tf~gnpla~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~  371 (456)
T 4atq_A          298 AG-GLPLSAITGRADLLDAVHPGGLGG--TYGGNPVACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSA  371 (456)
T ss_dssp             GT-TSSCEEEEEEHHHHTTSCTTSSCC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             cC-cCCceeeEecHHHHhcccccCCCC--CCCCChHHHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            86 4   88899999888776655444  66889999999999999997766   6667777777777777654  11  


Q ss_pred             ---cc---ccCCCcEEEEEeCCC-------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q psy16848        405 ---PV---EHTPSHIIPIKIGNP-------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFV  471 (514)
Q Consensus       405 ---~~---~~~~~~~~~i~l~~~-------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~  471 (514)
                         ++   +...|.++.+++.+.       .....+.+.++ ++|+.+.+..     ...+.||+.+++.+|++++++++
T Consensus       372 ~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~-~~Gvl~~~~g-----~~~~~irl~PpL~it~~~id~~l  445 (456)
T 4atq_A          372 GGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACL-KEGVIILTCG-----TYGNVIRLLPPLVISDELLIDGL  445 (456)
T ss_dssp             ----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECEEEC-----TTSCEEEECCCTTCCHHHHHHHH
T ss_pred             ccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHH-HCCCEEEecC-----CCCCEEEEECCCCCCHHHHHHHH
Confidence               22   234567888887432       22457888886 9999986432     12468999999999999999999


Q ss_pred             HHHHHHHHHc
Q psy16848        472 TDLLAVWKSL  481 (514)
Q Consensus       472 ~~l~~~l~~~  481 (514)
                      ++|+++++..
T Consensus       446 ~~l~~al~a~  455 (456)
T 4atq_A          446 EVLAAAIKAH  455 (456)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998753

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=4.5e-28  Score=246.82  Aligned_cols=331  Identities=18%  Similarity=0.165  Sum_probs=238.3

Q ss_pred             eecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhhccc
Q psy16848         21 CRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFTLGK   97 (514)
Q Consensus        21 ~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~l~~   97 (514)
                      +.+....+..+|++.+++.+++.    ..    ......+...+++++++++++.+   ..++++||++|+..++.++..
T Consensus        25 ~~~~p~p~~~~~~v~~a~~~~~~----~~----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~   96 (393)
T 3kgw_A           25 LLLGPGPSNLAPRVLAAGSLRMI----GH----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE   96 (393)
T ss_dssp             EECSSSCCCCCHHHHHHTTCCCC----CT----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC
T ss_pred             eeccCCCCCCCHHHHHHhccccc----Cc----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC
Confidence            33433334446777776655321    11    11122467789999999999865   246668899999999988865


Q ss_pred             cCCCceEEecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848         98 MIPGLHYISDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus        98 ~~~gd~v~~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                        +||.|+++.+.|.+.  ...++..|.+++.++...                                           
T Consensus        97 --~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------------------------------------  131 (393)
T 3kgw_A           97 --PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKP-------------------------------------------  131 (393)
T ss_dssp             --TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-------------------------------------------
T ss_pred             --CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCC-------------------------------------------
Confidence              999999998877532  344444555444332110                                           


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  255 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~  255 (514)
                                          .                                            ...|.+.+++.+++.
T Consensus       132 --------------------~--------------------------------------------~~~d~~~l~~~i~~~  147 (393)
T 3kgw_A          132 --------------------G--------------------------------------------EHYTLQEVEEGLAQH  147 (393)
T ss_dssp             --------------------T--------------------------------------------CCCCHHHHHHHHHHH
T ss_pred             --------------------C--------------------------------------------CCCCHHHHHHHHhhC
Confidence                                0                                            012566667766642


Q ss_pred             cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCC
Q psy16848        256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNI  334 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~  334 (514)
                         ++++|++++++||+|.+.|+++|.++|++||+++|+||+|+++...     + ...  ..++|+++.|+||++ ++.
T Consensus       148 ---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~-----~-~~~--~~~~d~~~~s~sK~~~~~~  216 (393)
T 3kgw_A          148 ---KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVP-----I-YMD--QQGIDIMYSSSQKVLNAPP  216 (393)
T ss_dssp             ---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSC-----C-CTT--TTTCCEEEEESSSTTCCCS
T ss_pred             ---CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcc-----c-chh--hcCCCEEEecCcccccCCC
Confidence               4789999999999999999999999999999999999999865321     1 111  236799999999987 455


Q ss_pred             C-eEEEecHHHHHHHHhhcCce---------------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        335 G-GYIVGTKNFIDTIRSYAAGF---------------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       335 G-G~l~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      | |++++++++++.+......+                     ....+.+...++++.++++.+.+.+++++++++++++
T Consensus       217 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  296 (393)
T 3kgw_A          217 GISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREAT  296 (393)
T ss_dssp             SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6 99999999998887533211                     1123457777888888888776667888999999999


Q ss_pred             HHHHHHHHhCCCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEe-CCCCCHH
Q psy16848        393 AYLRNELIQIGFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAP-TPFHTRE  465 (514)
Q Consensus       393 ~~l~~~L~~~g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e  465 (514)
                      +++.+.|++.++.+..+.     +.++++.+++..+..++.+.|+ ++ ||.+.++..+   ..++++|+++ +..++++
T Consensus       297 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~~  372 (393)
T 3kgw_A          297 AHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVL-DHFSIEISGGLGP---TEERVLRIGLLGYNATTE  372 (393)
T ss_dssp             HHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHH-HHHCEECBCCCGG---GTTTEEEEECCGGGCCHH
T ss_pred             HHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHH-HhCCEEEeCCccc---CCCCEEEEEecccCCCHH
Confidence            999999999887765322     2356688876667889999997 65 9999987642   2357999998 6556999


Q ss_pred             HHHHHHHHHHHHHHHcCC
Q psy16848        466 MIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       466 ~id~~~~~l~~~l~~~~~  483 (514)
                      ++++++++|+++++++..
T Consensus       373 ~i~~~~~~l~~~l~~~~~  390 (393)
T 3kgw_A          373 NVDRVAEALREALQHCPK  390 (393)
T ss_dssp             HHHHHHHHHHHHHHHSCB
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999999988753

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.96  E-value=1.5e-28  Score=252.90  Aligned_cols=343  Identities=14%  Similarity=0.104  Sum_probs=237.2

Q ss_pred             ceeeecccCC------CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--------------CCc
Q psy16848         18 RVTCRLSSVQ------YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--------------KEA   77 (514)
Q Consensus        18 ~~~~d~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------------~~~   77 (514)
                      ..++||..++      +..+|.+.+++.+++....  ..++....+    ..++++.++++++              .++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~----~~~lr~~la~~~~~~~~~~~~~~~~~~~~~  106 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVG----SPEAREAVATWWRNSFVHKEELKSTIVKDN  106 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTC----CHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc--cCCcCCCCC----CHHHHHHHHHHHHhhhcccccCCCCCCcce
Confidence            4689997654      3357899999999987631  111111123    3455555555554              345


Q ss_pred             EEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848         78 GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  157 (514)
Q Consensus        78 ~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~  157 (514)
                      ++++++|++|+..++.++..  +||.|+++.++|.+....++..|.+++.++... +                       
T Consensus       107 v~~~~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~-----------------------  160 (416)
T 1bw0_A          107 VVLCSGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRP-E-----------------------  160 (416)
T ss_dssp             EEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG-G-----------------------
T ss_pred             EEEeCChHHHHHHHHHHhCC--CCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCc-c-----------------------
Confidence            67777788899889888865  999999999999998877777777665443210 0                       


Q ss_pred             cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848        158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK  237 (514)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~  237 (514)
                                                          .+.                                         
T Consensus       161 ------------------------------------~~~-----------------------------------------  163 (416)
T 1bw0_A          161 ------------------------------------NDW-----------------------------------------  163 (416)
T ss_dssp             ------------------------------------GTT-----------------------------------------
T ss_pred             ------------------------------------cCC-----------------------------------------
Confidence                                                000                                         


Q ss_pred             EEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCC--Cccc
Q psy16848        238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGA--GIGE  312 (514)
Q Consensus       238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~--~~~~  312 (514)
                          ..|.+.+++.+    +++++++++++|+||||.++|   +++|.++|++||+++|+||+|+....+....  .+..
T Consensus       164 ----~~d~~~l~~~l----~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  235 (416)
T 1bw0_A          164 ----EADLDEIRRLK----DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS  235 (416)
T ss_dssp             ----EECHHHHHHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC
T ss_pred             ----CCCHHHHHHHh----ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC
Confidence                01344444444    345789999999999999999   9999999999999999999999543321100  1112


Q ss_pred             cCCC-ccCceEEEcCCcccccCCC---eEEEecHH--HHHHHHhhcCce-EeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848        313 RDGQ-LHNMDIISGTLGKAFGNIG---GYIVGTKN--FIDTIRSYAAGF-IFTTSLPPTVLAGAREAIRILSSQEGVELR  385 (514)
Q Consensus       313 ~~~~-~~~~di~~~S~sK~lg~~G---G~l~~~~~--~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  385 (514)
                      ...+ ....+++++|+||+++.+|   ||++++++  +++.+....... ..+.+.++..++++.++|+.....++++.+
T Consensus       236 ~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  315 (416)
T 1bw0_A          236 VADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIV  315 (416)
T ss_dssp             TTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHH
Confidence            2221 1234788999999987656   89987653  443332111000 013367888888888888754445677889


Q ss_pred             HHHHHHHHHHHHHHHhC-CCccccCC-CcEEEEEeCC-----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        386 AKHQDIVAYLRNELIQI-GFPVEHTP-SHIIPIKIGN-----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~i~l~~-----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      ++++++++++.+.|+++ ++.+..+. +.++++.++.     ..+..++.+.|++++||.+.++..+..   ++++|+++
T Consensus       316 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~iRis~  392 (416)
T 1bw0_A          316 AKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA---PGFTRLTT  392 (416)
T ss_dssp             HHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC---CCeEEEEe
Confidence            99999999999999987 77765554 5567777753     135678888886588999999886542   46999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +  .+++++++++++|++++++.+
T Consensus       393 ~--~~~e~l~~~l~~l~~~l~~~~  414 (416)
T 1bw0_A          393 T--RPVEVYREAVERIKAFCQRHA  414 (416)
T ss_dssp             C--SCHHHHHHHHHHHHHHHHHHB
T ss_pred             c--CCHHHHHHHHHHHHHHHHHhh
Confidence            6  689999999999999987653

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.96  E-value=3e-28  Score=249.73  Aligned_cols=338  Identities=17%  Similarity=0.144  Sum_probs=242.4

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.++|+.++   .+++  +|++.+++.+++.+.....  .  . ...+...+++++++++++.+++++++||++|+.
T Consensus        36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~--~--~-~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~  110 (406)
T 4adb_A           36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG--N--G-YTNEPVLRLAKKLIDATFADRVFFCNSGAEANE  110 (406)
T ss_dssp             TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--T--T-SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHH
T ss_pred             CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc--C--C-cCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHH
Confidence            367788999776   6765  7999999999998643221  1  1 134678999999999999998999999999999


Q ss_pred             cchhhcccc------CCCceEEecCccchhh-hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         90 STLFTLGKM------IPGLHYISDAGNHASM-IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        90 ~~l~~l~~~------~~gd~v~~~~~~h~~~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      .++.++...      ..+|.|++.++.|+.. ..+....+.....                                   
T Consensus       111 ~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~-----------------------------------  155 (406)
T 4adb_A          111 AALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYS-----------------------------------  155 (406)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGT-----------------------------------
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcccc-----------------------------------
Confidence            998876421      1336666655555444 4333333221100                                   


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                       ..+...+..+..++.
T Consensus       156 -----------------------------------------------------------------~~~~~~~~~~~~~~~  170 (406)
T 4adb_A          156 -----------------------------------------------------------------QDFAPLPADIRHAAY  170 (406)
T ss_dssp             -----------------------------------------------------------------GGGCSCCSSEEEECT
T ss_pred             -----------------------------------------------------------------ccCCCCCCCceEeCC
Confidence                                                                             001112334566666


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCcccc--C---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC--P---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQ  316 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~--~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~  316 (514)
                      +|.+.+++.+.    +++++|+++ |+||+|.++  +   +++|.++|++||+++|+||+|+ ++..|...  .....+ 
T Consensus       171 ~d~~~l~~~l~----~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~-  242 (406)
T 4adb_A          171 NDINSASALID----DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY--AYMHYG-  242 (406)
T ss_dssp             TCHHHHHTTCS----TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS--HHHHHT-
T ss_pred             CcHHHHHHHhc----CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH--HHHhcC-
Confidence            67666665553    568999999 789998876  3   8999999999999999999997 43333211  111222 


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                       ..+|++  ||||.+++ |   |++++++++++.+.......  +.+.+++.++++.++++.+..   ++.+++++++++
T Consensus       243 -~~~d~~--t~sK~~~~-G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~  313 (406)
T 4adb_A          243 -VTPDLL--TTAKALGG-GFPVGALLATEECARVMTVGTHGT--TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHD  313 (406)
T ss_dssp             -CCCSEE--EECGGGGT-TSCCEEEEECHHHHHTCCTTSSCC--SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHH
T ss_pred             -CCCCEE--EechhhcC-CCCeEEEEEcHHHHhhhccCCcCC--CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHH
Confidence             257888  78999985 5   99999999988877655444  447889999999999987643   468888899999


Q ss_pred             HHHHHHHhCCC--cc---ccCCCcEEEEEeCCCc--cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        394 YLRNELIQIGF--PV---EHTPSHIIPIKIGNPA--LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       394 ~l~~~L~~~g~--~~---~~~~~~~~~i~l~~~~--~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      ++.+.|++.+.  ..   ....+.++++.+++..  +..++.+.|+ ++||.+.++.       .+++|++++..+++++
T Consensus       314 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-------~~~iRi~~~~~~~~e~  385 (406)
T 4adb_A          314 WFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAA-KAGVMVLIAG-------GNVVRFAPALNVSEEE  385 (406)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHH-HTTEECEESS-------TTEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHH-HCCcEEeecC-------CCeEEEECCCCCCHHH
Confidence            99988887521  11   2234668888887632  5788999996 8899998632       5699999988899999


Q ss_pred             HHHHHHHHHHHHHHcC
Q psy16848        467 IDKFVTDLLAVWKSLD  482 (514)
Q Consensus       467 id~~~~~l~~~l~~~~  482 (514)
                      +++++++|+++++++.
T Consensus       386 i~~~~~~l~~~l~~~~  401 (406)
T 4adb_A          386 VTTGLDRFAAACEHFV  401 (406)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998763

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.96  E-value=1.5e-27  Score=246.52  Aligned_cols=349  Identities=12%  Similarity=0.078  Sum_probs=233.6

Q ss_pred             eeeecccC-CCCCChhHHHHHHHHHH---------HhCCCCCCcCcccCcchHHHHHHHHHHhHcC------CCcEEEEe
Q psy16848         19 VTCRLSSV-QYKVPKGGRKCLGEALE---------KFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ------KEAGLVFT   82 (514)
Q Consensus        19 ~~~d~~~~-~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~i~~~   82 (514)
                      .++|+.++ +.+++|.+.+++.++..         ... ....+....|..++.+++.+.+.+.+|      .+..++++
T Consensus        37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~  115 (428)
T 1iay_A           37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG  115 (428)
T ss_dssp             SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred             ceeeeccccchhhHHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence            57898653 34456677777764321         000 000011111233444444444443333      34456666


Q ss_pred             ccccccccchhhccccCCCceEEecCccchhhhhhhh-cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         83 SCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIR-NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        83 sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~-~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      ++++++..++.++..  +||.|+++.++|.+....+. ..|.+++.++....+                           
T Consensus       116 G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~---------------------------  166 (428)
T 1iay_A          116 GATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSN---------------------------  166 (428)
T ss_dssp             HHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTT---------------------------
T ss_pred             ChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCcc---------------------------
Confidence            677888888888866  99999999999999876553 567776655431000                           


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                       +.                                             
T Consensus       167 ---------------------------------~~---------------------------------------------  168 (428)
T 1iay_A          167 ---------------------------------NF---------------------------------------------  168 (428)
T ss_dssp             ---------------------------------TT---------------------------------------------
T ss_pred             ---------------------------------CC---------------------------------------------
Confidence                                             00                                             


Q ss_pred             CCChhHHHHHHhhc--cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCC
Q psy16848        242 HNDVNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDG  315 (514)
Q Consensus       242 ~~d~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~  315 (514)
                      ..|.+.+++.+++.  ..++++++++++|+||||.++|   +++|.++|++||+++|+||+|+.+.++. ...++.....
T Consensus       169 ~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~  248 (428)
T 1iay_A          169 KITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILD  248 (428)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHT
T ss_pred             cCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcc
Confidence            01455555555532  1235889999999999999999   9999999999999999999999543321 1111111111


Q ss_pred             ------CccCceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh--hchHHH
Q psy16848        316 ------QLHNMDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS--SQEGVE  383 (514)
Q Consensus       316 ------~~~~~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~  383 (514)
                            ...+..+++.|+||++|.+|   |++++ ++++++.+......+    +.+.+.+.++.++++...  ..++++
T Consensus       249 ~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~  324 (428)
T 1iay_A          249 EQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG----LVSTQTQYFLAAMLSDEKFVDNFLRE  324 (428)
T ss_dssp             SGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTS----CCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcc----cCCHHHHHHHHHHhcChHHHHHHHHH
Confidence                  00234488999999998667   99988 678888887654332    567788888777776321  235677


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccC-CCcEEEEEeCCC------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        384 LRAKHQDIVAYLRNELIQIGFPVEHT-PSHIIPIKIGNP------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       384 ~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~i~l~~~------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      .+++++++++++.+.|+++|+.+..+ .+.++++.++..      ....++.+.|++++||.+.++..+... +++++|+
T Consensus       325 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~-~~~~iRi  403 (428)
T 1iay_A          325 SAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ-EPGWFRV  403 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS-SSSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC-CCCEEEE
Confidence            88899999999999999988877666 455777887642      134578888863459999998764422 3579999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +++ .++++++++++++|++++++.
T Consensus       404 s~~-~~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          404 CFA-NMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             ECS-SSCHHHHHHHHHHHHHHHHTT
T ss_pred             EEe-cCCHHHHHHHHHHHHHHHhcc
Confidence            998 689999999999999988753

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=2e-27  Score=245.46  Aligned_cols=308  Identities=15%  Similarity=0.081  Sum_probs=226.5

Q ss_pred             cCcchHHHHHHHHHHhHcCCC----------cEEEEec-cccccccchhhccccCCCceEEecCccchhhhhhhhcCCCC
Q psy16848         56 SGNSLFHEKLEEDVAKLHQKE----------AGLVFTS-CYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP  124 (514)
Q Consensus        56 ~~~~~~~~~~~~~la~~~~~~----------~~i~~~s-Gt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~  124 (514)
                      .|..++.+++++.+++.+|.+          ..+++++ +++++..++.++..  +||.|+++.+.|......++..|.+
T Consensus        78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~  155 (425)
T 2r2n_A           78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPLGCN  155 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGGTCE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCE
Confidence            466788888888888877743          2455555 56778888888866  9999999999999999999999988


Q ss_pred             eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCc
Q psy16848        125 KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ  204 (514)
Q Consensus       125 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~  204 (514)
                      ++.++.++ +                                                                      
T Consensus       156 ~~~v~~~~-~----------------------------------------------------------------------  164 (425)
T 2r2n_A          156 IINVASDE-S----------------------------------------------------------------------  164 (425)
T ss_dssp             EEEECEET-T----------------------------------------------------------------------
T ss_pred             EEEeCcCC-C----------------------------------------------------------------------
Confidence            87665410 0                                                                      


Q ss_pred             hhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--------CCCceEEEE-ecCCCCCccc
Q psy16848        205 LHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--------VKIPKLVAF-ETVHSMTGAI  275 (514)
Q Consensus       205 ~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--------~~~~~~vv~-~~~~nptG~~  275 (514)
                                                           ..|.+.+++.+++..        .++++++++ ++++||||.+
T Consensus       165 -------------------------------------~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~  207 (425)
T 2r2n_A          165 -------------------------------------GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS  207 (425)
T ss_dssp             -------------------------------------EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC
T ss_pred             -------------------------------------CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc
Confidence                                                 003344444443211        134677765 7899999999


Q ss_pred             cC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHH
Q psy16848        276 CP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTI  348 (514)
Q Consensus       276 ~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l  348 (514)
                      ++   +++|.++|++||+++|+||+|+...+ +....++....  ..+.+++++||||+++ +|   ||+++++++++.+
T Consensus       208 ~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l  284 (425)
T 2r2n_A          208 LTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMD--VDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERV  284 (425)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGC--TTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccC--CCCCEEEEccchhhcc-CccceEEEecCHHHHHHH
Confidence            99   56999999999999999999995433 33222232222  1356899999999998 57   9999999999888


Q ss_pred             HhhcCceEeccCCcHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHHhC--CC-ccccC-CCcEEEEEeCC
Q psy16848        349 RSYAAGFIFTTSLPPTVLAGAREAIRILS----SQEGVELRAKHQDIVAYLRNELIQI--GF-PVEHT-PSHIIPIKIGN  420 (514)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~-~~~~~~i~l~~  420 (514)
                      .......  +.+.+.+.+.++.++++.+.    ..++++++++++++++++.+.|++.  ++ .+..+ .+.++++.++.
T Consensus       285 ~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~  362 (425)
T 2r2n_A          285 ILHIQVS--TLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKG  362 (425)
T ss_dssp             HHHHHTT--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETT
T ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCC
Confidence            7655443  33678888888888887532    2456778888999999999999884  65 34434 45577888876


Q ss_pred             CccHHH-HHHHHHHhCCeEEecccCCCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        421 PALNTK-ICDMLLKEKGHYVQPINYPTVP--VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       421 ~~~~~~-~~~~Ll~~~GI~v~~~~~~~~~--~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..+..+ +.+.| .++||.+.++..|...  .+.+++|++++. .+++++++++++|++++++
T Consensus       363 ~~~~~~~~~~~l-~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          363 INDVKELIEEKA-VKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             CSCCHHHHHTHH-HHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence            444555 46677 4999999999875543  235799999983 5999999999999998865

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.96  E-value=4.9e-28  Score=246.94  Aligned_cols=336  Identities=17%  Similarity=0.128  Sum_probs=238.6

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc---EEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l   92 (514)
                      +++.+.+.. +.+..+|++.+++.+++..    .    +.....+..+++++++++++|.+.   .++++|||+|+..++
T Consensus        17 ~~~~~~~~~-g~~~~~~~v~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   87 (393)
T 2huf_A           17 TPNKLLMGP-GPSNAPQRVLDAMSRPILG----H----LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATL   87 (393)
T ss_dssp             CCCCEECSS-SCCCCCHHHHHHTTSCCCC----T----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHH
T ss_pred             CCCeEEecC-CCCCCCHHHHHHHHhhhcc----C----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHH
Confidence            445544443 3444578888877665432    0    011124678899999999999753   455678889999999


Q ss_pred             hhccccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      .++..  +||.|+++.+.|.+..  ..++..|.+++.++.++ +                                    
T Consensus        88 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------  128 (393)
T 2huf_A           88 CNLLE--DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-G------------------------------------  128 (393)
T ss_dssp             HHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T------------------------------------
T ss_pred             HHHhC--CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-C------------------------------------
Confidence            88865  9999999999988742  12233344443332100 0                                    


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                            ...|.+.+++
T Consensus       129 ----------------------------------------------------------------------~~~d~~~l~~  138 (393)
T 2huf_A          129 ----------------------------------------------------------------------QSLSLDEIRD  138 (393)
T ss_dssp             ----------------------------------------------------------------------CCCCHHHHHH
T ss_pred             ----------------------------------------------------------------------CCCCHHHHHH
Confidence                                                                                  0125666666


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+++.   ++++|++++++||||.++|+++|.++|++||+++|+|++++++..   .  + +..  ..++|++++|+||+
T Consensus       139 ~i~~~---~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~---~--~-~~~--~~~~d~~~~s~sK~  207 (393)
T 2huf_A          139 ALLIH---KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGA---P--M-FMD--RWEIDAMYTGSQKV  207 (393)
T ss_dssp             HHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB---C--C-CTT--TTTCSEEECCSSST
T ss_pred             HHhcc---CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC---C--c-chh--hcCccEEEECCCcc
Confidence            66542   478999999999999999999999999999999999999986542   1  1 111  23689999999998


Q ss_pred             c-cCCC-eEEEecHHHHHHHHhhc---Cce-----------------Eec-cCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        331 F-GNIG-GYIVGTKNFIDTIRSYA---AGF-----------------IFT-TSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       331 l-g~~G-G~l~~~~~~~~~l~~~~---~~~-----------------~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      + |+.| |++++++++++.+....   ..+                 .+. .+.+...++++.++++.+.+.++++.+++
T Consensus       208 l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  287 (393)
T 2huf_A          208 LGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIAR  287 (393)
T ss_dssp             TCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            6 4567 99999999998887541   111                 011 24566666777778887654467888999


Q ss_pred             HHHHHHHHHHHHHhCCCccccCC---C-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCC
Q psy16848        388 HQDIVAYLRNELIQIGFPVEHTP---S-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFH  462 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~g~~~~~~~---~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~  462 (514)
                      ++++++++.+.|++.|+.+..+.   . .++.+.++...+..++.+.|++++||.+.++..+.   ..+++|+++ +..+
T Consensus       288 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~---~~~~~Ri~~~~~~~  364 (393)
T 2huf_A          288 HEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT---AGQVFRIGLMGQNA  364 (393)
T ss_dssp             HHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG---TTTEEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc---cCCEEEEEcccCcC
Confidence            99999999999998887766542   2 37778887545678899999644599998776532   357999999 5445


Q ss_pred             CHHHHHHHHHHHHHHHHHcCC
Q psy16848        463 TREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +++++++++++|++++++++.
T Consensus       365 ~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          365 TTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCC
Confidence            799999999999999988754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.96  E-value=5e-28  Score=251.72  Aligned_cols=344  Identities=15%  Similarity=0.141  Sum_probs=234.5

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a   87 (514)
                      +|+.|+||.++   ..++  ||++++++.+++++... .   ....+..+...+++++++++++   .++++|++|||+|
T Consensus        59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA  134 (451)
T 3oks_A           59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH-T---CFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEA  134 (451)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC-C---TTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHH
T ss_pred             CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc-c---cCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHH
Confidence            67788888653   3344  79999999999987422 1   1123456788999999999985   3568889999999


Q ss_pred             cccchhhccccCCCceEE-ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         88 NDSTLFTLGKMIPGLHYI-SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~-~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +..+++.+....+++.|+ .+..+|.....+....+... .+..                                    
T Consensus       135 ~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~------------------------------------  177 (451)
T 3oks_A          135 VENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVM-PYKD------------------------------------  177 (451)
T ss_dssp             HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCT-TTTT------------------------------------
T ss_pred             HHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCc-cccc------------------------------------
Confidence            999997654312334454 45555555554444433210 0000                                    


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC----
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH----  242 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~----  242 (514)
                                                                                    .+......+..++.    
T Consensus       178 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  195 (451)
T 3oks_A          178 --------------------------------------------------------------GFGPFAPEIYRAPLSYPF  195 (451)
T ss_dssp             --------------------------------------------------------------TCCSCCSSEEEECCCCHH
T ss_pred             --------------------------------------------------------------CCCCCCCCcEEeCCCccc
Confidence                                                                          00000111122221    


Q ss_pred             --------------CChhHHHHHHhhccC-CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccc
Q psy16848        243 --------------NDVNHLTQVLENMDV-KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGL  302 (514)
Q Consensus       243 --------------~d~~~l~~~l~~~~~-~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~  302 (514)
                                    .+++.+++.+++... +++++|+++++++++|.+.+    +++|+++|++||+++|+||+|+ ++.
T Consensus       196 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~  275 (451)
T 3oks_A          196 RDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFAR  275 (451)
T ss_dssp             HHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             cccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence                          134455566654333 45788999998888888877    9999999999999999999998 555


Q ss_pred             cCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhc
Q psy16848        303 YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQ  379 (514)
Q Consensus       303 ~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  379 (514)
                      .|..+  ..+..+.  .+|++  ||+|++++ |   |++++++++++.+.......  +++.+++.++++.++++.+.++
T Consensus       276 ~g~~~--~~~~~~~--~pdi~--t~sK~l~~-G~~iG~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~~  346 (451)
T 3oks_A          276 TGAMF--ACEHEGI--DPDLI--VTAKGIAG-GLPLSAVTGRAEIMDSPHVSGLGG--TYGGNPIACAAALATIETIESE  346 (451)
T ss_dssp             TSSSS--GGGGGTC--CCSEE--EECGGGGT-TSSCEEEEEEHHHHTCSCTTSBCC--SSSSCHHHHHHHHHHHHHHHHT
T ss_pred             cccch--hhhhcCC--CCCee--eehhhhhC-CcceEEEEECHHHHhhhcCCCcCC--CCCCCHHHHHHHHHHHHHHhhh
Confidence            44321  1233333  67888  89999987 6   99999999988776544333  5578999999999999977544


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhC----C-CccccCCCcEEEEEeC-------CCccHHHHHHHHHHhCCeEEecccCCCC
Q psy16848        380 EGVELRAKHQDIVAYLRNELIQI----G-FPVEHTPSHIIPIKIG-------NPALNTKICDMLLKEKGHYVQPINYPTV  447 (514)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~i~l~-------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~  447 (514)
                      .   +.++++++.+++++.|.++    . +....+.+.++++.+.       +.....++.+.|+ ++||.+.++..   
T Consensus       347 ~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~---  419 (451)
T 3oks_A          347 G---LVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAH-AAGVIVLSCGT---  419 (451)
T ss_dssp             T---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHH-HTTEECEEECT---
T ss_pred             h---HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHH-hCCcEEecCCC---
Confidence            3   5666666666666666553    2 2233456778888773       2234667888886 89999987542   


Q ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        448 PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       448 ~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                        ..+.+|++++..++++++++++++|++++++
T Consensus       420 --~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          420 --YGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             --TSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             --CCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence              1368999999999999999999999998764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=3e-27  Score=235.92  Aligned_cols=314  Identities=13%  Similarity=0.123  Sum_probs=230.0

Q ss_pred             CCceeeecccC-CCCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-EEEEec-cccccccc
Q psy16848         16 SNRVTCRLSSV-QYKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-GLVFTS-CYVANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~i~~~s-Gt~a~~~~   91 (514)
                      ..+.+||++++ ++++ +|.+.+++.+.+....    .    +. .+...++++.++++++.+. .+++++ +++++..+
T Consensus        14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~----~----y~-~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~   84 (337)
T 3p1t_A           14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARIN----R----YP-FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRI   84 (337)
T ss_dssp             CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGTT----S----CC-TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCCCCCHHHHHHHHHhhhhhc----c----CC-CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHH
Confidence            44578999776 4554 7899999888776421    1    11 2467899999999998653 455555 45566666


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +..+    +||.|+++.+.|.+....++..|.+++.++.++                                       
T Consensus        85 ~~~~----~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~---------------------------------------  121 (337)
T 3p1t_A           85 SAEF----SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD---------------------------------------  121 (337)
T ss_dssp             HHHS----TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT---------------------------------------
T ss_pred             HHhc----CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC---------------------------------------
Confidence            6554    899999999999998888777777766554310                                       


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                                                                              ++..+.+.
T Consensus       122 ------------------------------------------------------------------------~~~~d~~~  129 (337)
T 3p1t_A          122 ------------------------------------------------------------------------DLLLDPND  129 (337)
T ss_dssp             ------------------------------------------------------------------------TSSBCHHH
T ss_pred             ------------------------------------------------------------------------CCCCCHHH
Confidence                                                                                    11111222


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccc-cccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV-GLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~-g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      +++.  .+++++++++++||||.++|++++.++|+++++ +|+||+|+. +..+..   .   .. ..+.+++++|+||.
T Consensus       130 l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~---~---~~-~~~~~i~~~S~sK~  199 (337)
T 3p1t_A          130 LAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRAR---G---LA-YGENELVFRSFSKS  199 (337)
T ss_dssp             HTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSS---C---CC-CBTTEEEEEESSST
T ss_pred             HHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhcccccc---c---cc-cCCCEEEEeeCchh
Confidence            3332  357899999999999999999999999999997 566999983 221110   1   11 23678999999999


Q ss_pred             ccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy16848        331 FGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE  407 (514)
Q Consensus       331 lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  407 (514)
                      +|.+|   ||+++++++++.+......    .+.+...+.++.++++..  ....+.++++.++++++.+.|+++|+.+.
T Consensus       200 ~g~~G~r~G~~~~~~~~~~~l~~~~~~----~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  273 (337)
T 3p1t_A          200 YGLAGLRLGALFGPSELIAAMKRKQWF----CNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVA  273 (337)
T ss_dssp             TCCTTTCCEEEECCHHHHHHHHTTSCT----TCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred             ccCcchheEEEEeCHHHHHHHHhhcCC----CCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEEC
Confidence            98656   9999999999988775433    256777777777777632  23456777778888999999999888887


Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        408 HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       408 ~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .+.++++++..++   ..++.+.| +++||.+.++..|..   ++++|++++   +++++++++++|+++++
T Consensus       274 ~~~~~~~~~~~~~---~~~~~~~l-~~~gi~v~~g~~~~~---~~~iRis~~---~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          274 SSEANFVLVENAA---GERTLRFL-RERGIQVKDAGQFGL---HHHIRISIG---REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             CCSSSEEEEECTT---THHHHHHH-HHTTEECEEGGGGTC---CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEEcCC---HHHHHHHH-HHCCeEEEECccCCC---CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence            7788888887764   34666777 589999999887543   469999998   79999999999988753

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.96  E-value=5.7e-28  Score=251.17  Aligned_cols=357  Identities=15%  Similarity=0.116  Sum_probs=229.4

Q ss_pred             CCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEecccccc
Q psy16848         16 SNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a~   88 (514)
                      +|+.++||.+   ..+++  ||++.+++.+++++.....    ...+..+...++++++++++  +.++++|++||++|+
T Consensus        42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~  117 (448)
T 3dod_A           42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHST----LLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAM  117 (448)
T ss_dssp             TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCC----CSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHH
Confidence            7788889865   44555  7999999999998743211    12345678899999999998  456788899999999


Q ss_pred             ccchhhcccc---CC---CceEEecCccchh-hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         89 DSTLFTLGKM---IP---GLHYISDAGNHAS-MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        89 ~~~l~~l~~~---~~---gd~v~~~~~~h~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      ..++..+...   ..   +|.|++.++.|+. ...+....+.......          +...   .+...          
T Consensus       118 ~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~----------~~~~---~~~~~----------  174 (448)
T 3dod_A          118 EIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHV----------YGPL---MFESY----------  174 (448)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEEC------------------------------------------CE----------
T ss_pred             HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccccc----------ccCC---CCCce----------
Confidence            9999887541   12   4777776666544 3333332221110000          0000   00000          


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                               .++.+..|..  .  +.....+.
T Consensus       175 ---------------------------------------------------------~~~~~~~~~~--~--~~~~~~~~  193 (448)
T 3dod_A          175 ---------------------------------------------------------KAPIPYVYRS--E--SGDPDECR  193 (448)
T ss_dssp             ---------------------------------------------------------EECCCCCTTS--S--SCCHHHHH
T ss_pred             ---------------------------------------------------------EeCCCccccC--C--ccchhhhh
Confidence                                                                     0000000000  0  00000001


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCC-CCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCC
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVH-SMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDG  315 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~-nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~  315 (514)
                      .+|++.+++.+++. .+++++|++++++ |++|...+    +++|+++|++||++||+||+|+ +|..|..+  ..+..+
T Consensus       194 ~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~--a~~~~~  270 (448)
T 3dod_A          194 DQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF--ACEHEN  270 (448)
T ss_dssp             HHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS--GGGGGT
T ss_pred             HHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh--hhhhcC
Confidence            12467788887632 2457899999998 99998776    9999999999999999999999 55554322  123333


Q ss_pred             CccCceEEEcCCcccccCC---CeEEEecHHHHHHHHh-------hcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848        316 QLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRS-------YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR  385 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  385 (514)
                      .  .+|++  +|+|++++.   .|++++++++++.+..       ....  .+++.+++.++++.++|+.+.++.   +.
T Consensus       271 ~--~~di~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~---~~  341 (448)
T 3dod_A          271 V--QPDLM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG--HSYTGNQLGCAVALENLALFESEN---IV  341 (448)
T ss_dssp             C--CCSEE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCC--CTTTTCHHHHHHHHHHHHHHHHTT---HH
T ss_pred             C--CCCEE--EecccccCCcCceEEEEECHHHHHHhhhccccCCccccc--CCCCcCHHHHHHHHHHHHHHhccc---HH
Confidence            3  67887  789999762   1899999999988865       2222  255789999999999999775444   56


Q ss_pred             HHHHHHHHHHHHHHHhC-CCc---cccCCCcEEEEEeCCCcc-----------HHHHHHHHHHhCCeEEecccCCCCCCC
Q psy16848        386 AKHQDIVAYLRNELIQI-GFP---VEHTPSHIIPIKIGNPAL-----------NTKICDMLLKEKGHYVQPINYPTVPVG  450 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~-g~~---~~~~~~~~~~i~l~~~~~-----------~~~~~~~Ll~~~GI~v~~~~~~~~~~~  450 (514)
                      ++++++.+++++.|.++ +++   ...+.+.++++.++....           ..++++.|+ ++||.+.++        
T Consensus       342 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~--------  412 (448)
T 3dod_A          342 EQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMR-ELGMLTRPL--------  412 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECCEE--------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHH-HCCcEEecc--------
Confidence            66666666766666653 222   223457788888765321           367889996 889999764        


Q ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+++|++++..+|++++++++++|+++++++
T Consensus       413 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  443 (448)
T 3dod_A          413 GDVIAFLPPLASTAEELSEMVAIMKQAIHEV  443 (448)
T ss_dssp             TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            2589999999999999999999999998765

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.96  E-value=3.4e-29  Score=252.34  Aligned_cols=331  Identities=12%  Similarity=0.066  Sum_probs=229.2

Q ss_pred             eeee-cccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhh
Q psy16848         19 VTCR-LSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        19 ~~~d-~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~   94 (514)
                      +++| |.+++|++   ||.+.+++.++++.++.  ..+...++..+...++++++++++|.+..++++||++|+..++.+
T Consensus         4 ~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~   81 (357)
T 3lws_A            4 RLRTSFQQTTGQISGHGKRNVGVLKTAFAAVAD--EMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRI   81 (357)
T ss_dssp             HHHHHHHTCSEESSBSSCCBHHHHHHHHTTSCT--TCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred             hhhhHHHhhcccccCCCCCCHHHHHHHHHHhhc--ccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHH
Confidence            4565 68888885   78999988888887652  223345566678899999999999999899999999999999888


Q ss_pred             ccccCCCc--eEEecCccchhhhhh---hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         95 LGKMIPGL--HYISDAGNHASMIQG---IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        95 l~~~~~gd--~v~~~~~~h~~~~~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      +..  +||  .|++++.+|.+....   ....|.                                              
T Consensus        82 ~~~--~gd~~~vi~~~~~~~~~~~~~~~~~~~g~----------------------------------------------  113 (357)
T 3lws_A           82 WSD--ETDNRTVAYHPLCHLEIHEQDGLKELHPI----------------------------------------------  113 (357)
T ss_dssp             HHH--HHTCCEEEECTTCHHHHSSTTHHHHHSSC----------------------------------------------
T ss_pred             Hhh--cCCCcEEEecccceeeeeccchhhhccCc----------------------------------------------
Confidence            876  777  899998888776531   222233                                              


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                        +++.++..+...+.
T Consensus       114 ------------------------------------------------------------------~~~~v~~~~~~~d~  127 (357)
T 3lws_A          114 ------------------------------------------------------------------ETILVGAADRLMTL  127 (357)
T ss_dssp             ------------------------------------------------------------------EEEECSCTTSCCCH
T ss_pred             ------------------------------------------------------------------EEEEecCCCCCcCH
Confidence                                                                              33333322222222


Q ss_pred             HHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+++..  +++++++++|+||+ |.+++   +++|.++|++||+++|+|++|.++.....+.+.....   ...|+++.
T Consensus       128 ~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~  202 (357)
T 3lws_A          128 DEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYI  202 (357)
T ss_dssp             HHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEE
T ss_pred             HHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEE
Confidence            3333332  27899999999998 99887   8999999999999999999987322111111111111   24677889


Q ss_pred             CCcccc-cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        326 TLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       326 S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                      |+||++ ++.||++++++++++.+......+..+...+...++++..+++... +    ..+++.++++++.+.|+++ +
T Consensus       203 s~sK~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~~~~~~~~~~~l~~~L~~~~g  277 (357)
T 3lws_A          203 SFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRK-D----RMGQYYEQAKQLAEQFNALPG  277 (357)
T ss_dssp             ESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHHHHTSTT
T ss_pred             eccccCCCCceEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHhCCC
Confidence            999999 5566999999999988875443221122233444445556666432 2    2334577788999999988 7


Q ss_pred             Cccc--cCCCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC---CCHHHHHHHHHHHHH
Q psy16848        404 FPVE--HTPSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF---HTREMIDKFVTDLLA  476 (514)
Q Consensus       404 ~~~~--~~~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~---~t~e~id~~~~~l~~  476 (514)
                      +.+.  ++.++++++.++..  .+..++.+.| .++||.+.++..+.  .+..++|++++..   .+++++++++++|++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~g~~~~--~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~  354 (357)
T 3lws_A          278 VHTTPEVPVSNMFHLHFDGQAADISPKLEQVQ-EETGLGFVGYLVDK--DGYCSTEISVGDAYGELDQQTRDAGFARLRQ  354 (357)
T ss_dssp             EEEESSSCSSSEEEEEEESCHHHHHHHHHHHH-HHHCEESCSCCEEC--SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHH
T ss_pred             CeeccCCCcceEEEEEecCChHHHHHHHHHHH-HhcCeEEecccccC--CCceEEEEEecchhhhcCHHHHHHHHHHHHH
Confidence            7762  45667888887653  2356777888 48999999886533  3456899998743   578889999998887


Q ss_pred             HH
Q psy16848        477 VW  478 (514)
Q Consensus       477 ~l  478 (514)
                      ++
T Consensus       355 al  356 (357)
T 3lws_A          355 AF  356 (357)
T ss_dssp             HC
T ss_pred             hc
Confidence            54

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=7.9e-28  Score=245.09  Aligned_cols=325  Identities=18%  Similarity=0.116  Sum_probs=227.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc--EEEEeccccccccchhhcccc----------
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA--GLVFTSCYVANDSTLFTLGKM----------   98 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~i~~~sGt~a~~~~l~~l~~~----------   98 (514)
                      +|++.+++.+++......+.   ...+..+..+++++++++++|.+.  .++++||++|+..++.++...          
T Consensus        43 ~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~  119 (397)
T 3f9t_A           43 LPITRKIVDIFLETNLGDPG---LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS  119 (397)
T ss_dssp             CTHHHHHHHHHTTCCTTSGG---GBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHhhcCCCcc---cChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhccc
Confidence            68888888887765222111   112456778899999999998754  477888999999999887651          


Q ss_pred             -CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848         99 -IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  177 (514)
Q Consensus        99 -~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
                       ++||.|+++.++|.+...+++..|.+++.++.++.                                            
T Consensus       120 ~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~--------------------------------------------  155 (397)
T 3f9t_A          120 KNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED--------------------------------------------  155 (397)
T ss_dssp             CCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT--------------------------------------------
T ss_pred             CCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC--------------------------------------------
Confidence             24999999999999998888877777666554200                                            


Q ss_pred             ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848        178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  257 (514)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~  257 (514)
                                         +                                            ..|.+.+++.+++.  
T Consensus       156 -------------------~--------------------------------------------~~d~~~l~~~i~~~--  170 (397)
T 3f9t_A          156 -------------------Y--------------------------------------------TIDEKFVKDAVEDY--  170 (397)
T ss_dssp             -------------------S--------------------------------------------SBCHHHHHHHHHHS--
T ss_pred             -------------------C--------------------------------------------cCCHHHHHHHHhhc--
Confidence                               0                                            01455556665542  


Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCC--Ccc----ccCCCccCceEEEcCCcccc
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGA--GIG----ERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~--~~~----~~~~~~~~~di~~~S~sK~l  331 (514)
                       +++++++++++||+|.+.++++|.++|++||+++|+||+|+.+..+..+.  .+.    +..... +.|+++.|+||++
T Consensus       171 -~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~  248 (397)
T 3f9t_A          171 -DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMG  248 (397)
T ss_dssp             -CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTT
T ss_pred             -CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEcccccc
Confidence             47899999999999999999999999999999999999998554322211  000    111112 6799999999998


Q ss_pred             cCC-C-eEEEec-HHHHHHHHhhcCceEe------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        332 GNI-G-GYIVGT-KNFIDTIRSYAAGFIF------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       332 g~~-G-G~l~~~-~~~~~~l~~~~~~~~~------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +++ + |+++.+ +.+.+.+......+..      ..+.+.....+..+++..+...+.++..++.+++++++.+.|++.
T Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  328 (397)
T 3f9t_A          249 HCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN  328 (397)
T ss_dssp             CCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            543 2 777665 4455444322111100      011122233334444444445566788899999999999999998


Q ss_pred             CCccc-cCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVE-HTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       403 g~~~~-~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      ++++. .+.++++.+.+++   ..++.+.|. ++||.+.++..      ++++|++++..++++++++++++|+++++
T Consensus       329 g~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~gi~v~~~~~------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          329 NFKPVIEPILNIVAIEDED---YKEVCKKLR-DRGIYVSVCNC------VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             TCCBSSCCSSSEEEEECTT---HHHHHHHHH-HTTCBCEECSS------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             CCEEEcCCCccEEEEEeCC---HHHHHHHHH-hCCeEEeccCC------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            87754 4456677777664   678889995 88999987654      46999999988999999999999998764

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.96  E-value=2e-27  Score=250.27  Aligned_cols=337  Identities=12%  Similarity=0.080  Sum_probs=234.1

Q ss_pred             hhHHHHHHHHHHHhC-CCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccchhhcc-ccCCCceEE
Q psy16848         32 KGGRKCLGEALEKFG-TGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTLFTLG-KMIPGLHYI  105 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l~~l~-~~~~gd~v~  105 (514)
                      +++.+++.+.+.... .....+....|..++.+++++.+.+..|    .+.++++++|++++..++.++. .  +||.|+
T Consensus       109 ~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vl  186 (500)
T 3tcm_A          109 ADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN--EKDGIL  186 (500)
T ss_dssp             HHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS--TTEEEE
T ss_pred             HHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC--CCCEEE
Confidence            446666666666542 1333444455666777777777766654    3456666667778888888876 5  999999


Q ss_pred             ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848        106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  185 (514)
Q Consensus       106 ~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (514)
                      ++.+.|.+...+++..|.+++.++..+.                                                    
T Consensus       187 v~~p~y~~~~~~~~~~g~~~~~~~~~~~----------------------------------------------------  214 (500)
T 3tcm_A          187 VPIPQYPLYSASIALHGGALVPYYLNES----------------------------------------------------  214 (500)
T ss_dssp             EEESCCTHHHHHHHHTTCEEEEEECBTT----------------------------------------------------
T ss_pred             EeCCCcHhHHHHHHHcCCEEEEEecccc----------------------------------------------------
Confidence            9999999999999999988887653100                                                    


Q ss_pred             ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEE
Q psy16848        186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLV  263 (514)
Q Consensus       186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~v  263 (514)
                              .++                                             ..|++.+++.+++..  ..++++|
T Consensus       215 --------~~~---------------------------------------------~~d~~~l~~~l~~~~~~~~~~k~i  241 (500)
T 3tcm_A          215 --------TGW---------------------------------------------GLETSDVKKQLEDARSRGINVRAL  241 (500)
T ss_dssp             --------TTS---------------------------------------------BCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             --------cCC---------------------------------------------CCCHHHHHHHHHHHHhcCCCceEE
Confidence                    000                                             014455555554421  1247889


Q ss_pred             EEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccc---cCC--CccCceEEEcCCcccc-c
Q psy16848        264 AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGE---RDG--QLHNMDIISGTLGKAF-G  332 (514)
Q Consensus       264 v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~---~~~--~~~~~di~~~S~sK~l-g  332 (514)
                      ++++++||||.+++   +++|+++|++||+++|+||+|..+.++.  ...++..   ..+  ......++++||||.+ |
T Consensus       242 vl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  321 (500)
T 3tcm_A          242 VVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG  321 (500)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTC
T ss_pred             EEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCC
Confidence            99999999999999   6788888999999999999999655432  2222110   011  0112358889999998 6


Q ss_pred             CCC---eEEEe---cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH----------hhhchHHHHHHHHHHHHHHHH
Q psy16848        333 NIG---GYIVG---TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI----------LSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       333 ~~G---G~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~----------~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      .+|   ||+++   ++++++.+......   ..+.+...+.++..+++.          + ....++++++++++++++.
T Consensus       322 ~~G~R~G~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~  397 (500)
T 3tcm_A          322 ECGKRGGYFEITGFSAPVREQIYKIASV---NLCSNITGQILASLVMNPPKASDESYASY-KAEKDGILASLARRAKALE  397 (500)
T ss_dssp             CGGGCCEEEEEESCCTTHHHHHHHHHHT---TCCCCHHHHHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCccceEEEEEeCCCHHHHHHHHHHHhc---ccCCCHHHHHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            555   99987   88888888765421   235677777777766641          2 2345678888999999999


Q ss_pred             HHHHhC-CCccccCCCcEEE-EEeCCCc------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        397 NELIQI-GFPVEHTPSHIIP-IKIGNPA------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       397 ~~L~~~-g~~~~~~~~~~~~-i~l~~~~------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      +.|++. |+.+..+.++++. +.+..+.            ....++..+++++||.+.|+..|....+..++|++++  .
T Consensus       398 ~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~  475 (500)
T 3tcm_A          398 HAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--P  475 (500)
T ss_dssp             HHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--S
T ss_pred             HHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--C
Confidence            999998 8888777776443 3333211            1233455665688999999998775566789999999  7


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      +++++++++++|+++++++
T Consensus       476 ~~e~i~~~i~~l~~~~~~~  494 (500)
T 3tcm_A          476 QEDKIPAVISRFTVFHEAF  494 (500)
T ss_dssp             CTTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            8899999999999988765

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.96  E-value=8.5e-28  Score=250.10  Aligned_cols=346  Identities=16%  Similarity=0.156  Sum_probs=234.2

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a   87 (514)
                      +|+.|+||.++   ..++  ||++++++.+++++... .   ....+..+...+++++++++++   .++++|++|||+|
T Consensus        62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA  137 (453)
T 4ffc_A           62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH-T---CFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEA  137 (453)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC-C---TTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred             CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc-c---ccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHH
Confidence            77889999654   3454  79999999999988422 1   1223456888999999999985   3568889999999


Q ss_pred             cccchhhccccCCCce-EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         88 NDSTLFTLGKMIPGLH-YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~-v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +..+++.+....+++. |..+..+|.....+....+... .+..                                    
T Consensus       138 ~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~-~~~~------------------------------------  180 (453)
T 4ffc_A          138 VENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSM-PYKS------------------------------------  180 (453)
T ss_dssp             HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCT-TTTT------------------------------------
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCc-cccc------------------------------------
Confidence            9999976542113344 4455555655555444433210 0000                                    


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC---
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN---  243 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~---  243 (514)
                                                                                    .+......+..++.+   
T Consensus       181 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  198 (453)
T 4ffc_A          181 --------------------------------------------------------------QFGPFAPEVYRMPASYPL  198 (453)
T ss_dssp             --------------------------------------------------------------TSCSCCSSEEEECCCCTT
T ss_pred             --------------------------------------------------------------CCCCCCCCcEEeCCCccc
Confidence                                                                          000000111122211   


Q ss_pred             ----------ChhHHHHHHhhccC-CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCC
Q psy16848        244 ----------DVNHLTQVLENMDV-KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHG  307 (514)
Q Consensus       244 ----------d~~~l~~~l~~~~~-~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~  307 (514)
                                +++.+.+.+++... +++++|++++.++++|.+.+    +++|+++|++||+++|+||+|+ ++..|..+
T Consensus       199 ~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~  278 (453)
T 4ffc_A          199 RDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF  278 (453)
T ss_dssp             TSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred             cCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc
Confidence                      12333344544433 34678888888888888876    9999999999999999999998 55554321


Q ss_pred             CCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848        308 AGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL  384 (514)
Q Consensus       308 ~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  384 (514)
                        ..+..+.  .+|++  ||+|++++ |   |++++++++++.+.......  +++.+++.++++.++++.+.++.   .
T Consensus       279 --a~~~~~~--~pdi~--t~sK~~~~-G~~~G~~~~~~~i~~~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~  346 (453)
T 4ffc_A          279 --ASEHEGI--VPDIV--TMAKGIAG-GMPLSAVTGRAELMDAVYAGGLGG--TYGGNPVTCAAAVAALGVMRELD---L  346 (453)
T ss_dssp             --THHHHTC--CCSEE--EECGGGGT-TSSCEEEEEEHHHHTTSCTTSSCC--SSSSCHHHHHHHHHHHHHHHHTT---H
T ss_pred             --hhhhcCC--CcchH--hhhhhhcC-CcCeEEEEECHHHHhhhcccCcCC--CCCcCHHHHHHHHHHHHHhhhhh---H
Confidence              1223333  67887  78999987 6   99999999988876554443  55789999999999999775443   5


Q ss_pred             HHHHHHHHHHHHHHHHhC-----CCccccCCCcEEEEEeC-------CCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        385 RAKHQDIVAYLRNELIQI-----GFPVEHTPSHIIPIKIG-------NPALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~i~l~-------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                      .++++++.+++++.|+++     .+....+.+.++++.+.       +.....++.+.|+ ++||.+.++..     ..+
T Consensus       347 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----~~~  420 (453)
T 4ffc_A          347 PARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEAL-SQGVLILTCGT-----FGN  420 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECCEECT-----TSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHH-hCCCEEecCCC-----CCC
Confidence            566666666666666543     22233456778888773       2234667888886 89999987543     136


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+|++++..++++++++++++|+++++++.
T Consensus       421 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  450 (453)
T 4ffc_A          421 VIRLLPPLVIGDDLLDEGITALSDIIRAKA  450 (453)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999998753

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.96  E-value=1.1e-27  Score=244.64  Aligned_cols=333  Identities=18%  Similarity=0.195  Sum_probs=235.2

Q ss_pred             CCceeeecccC---CCC--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYK--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.++|+.++   .++  .+|++.+++.++++.++..  +..  + ..+..++++++++++++  .+++++++||++|+
T Consensus        43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~--~~~--~-~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~  117 (395)
T 1vef_A           43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM--PQT--L-PTPMRGEFYRTLTAILPPELNRVFPVNSGTEAN  117 (395)
T ss_dssp             TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--CTT--S-CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHH
T ss_pred             CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCC--ccc--c-CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHH
Confidence            56778899654   344  4789999999999875432  111  1 35788999999999994  55678888899999


Q ss_pred             ccchhhccccCCCceEEecCccc-hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNH-ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h-~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++.++....+||.|++.++.| .....+++..|.+.+....                                     
T Consensus       118 ~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~-------------------------------------  160 (395)
T 1vef_A          118 EAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPF-------------------------------------  160 (395)
T ss_dssp             HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGG-------------------------------------
T ss_pred             HHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCccccccc-------------------------------------
Confidence            98887663112677776666555 4555555555554221000                                     


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                     ......+..++..|.+.
T Consensus       161 ---------------------------------------------------------------~p~~~~~~~~~~~d~~~  177 (395)
T 1vef_A          161 ---------------------------------------------------------------LPLVEPVEFIPYNDVEA  177 (395)
T ss_dssp             ---------------------------------------------------------------CSCSSCEEEECTTCHHH
T ss_pred             ---------------------------------------------------------------CCCCCCeeEeCCCcHHH
Confidence                                                                           00011233344456666


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCc-cccCCCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI-GERDGQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~-~~~~~~~~~~di  322 (514)
                      +++.++    +++++|++++++||||.+.+    +++|.++|++||+++|+||+|+ ++ +..+..+ .+..+  ..+|+
T Consensus       178 l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~-~~~g~~~~~~~~~--~~~d~  249 (395)
T 1vef_A          178 LKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-GM-GRTGKRFAFEHFG--IVPDI  249 (395)
T ss_dssp             HHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TT-TTTSSSSTHHHHT--CCCSE
T ss_pred             HHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CC-ccCCchhHhhhcC--CCCCE
Confidence            666664    45889999999999999887    9999999999999999999999 32 2222111 11222  25687


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +  ||||++++ |   |++++++++++.+......  .+.+.++..++++.++++.+..   ++..++++++++++.+.|
T Consensus       250 ~--s~sK~~~~-g~~~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l  321 (395)
T 1vef_A          250 L--TLAKALGG-GVPLGVAVMREEVARSMPKGGHG--TTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKL  321 (395)
T ss_dssp             E--EECGGGGT-TSSCEEEEEEHHHHHTSCTTSSC--CSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH
T ss_pred             E--EEcccccC-CCceEEEEehHHHHhhhccCCcC--CCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence            7  88999987 4   9999988887766542222  2446788899999999987643   347788899999999999


Q ss_pred             HhCCCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        400 IQIGFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       400 ~~~g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      ++++.++   ..+.+.++++.++..  ..++.+.|++++||.+.++       +.+++|++++..++++++++++++|++
T Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~--~~~l~~~l~~~~gi~v~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~  392 (395)
T 1vef_A          322 RAIPSPKIREVRGMGLMVGLELKEK--AAPYIARLEKEHRVLALQA-------GPTVIRFLPPLVIEKEDLERVVEAVRA  392 (395)
T ss_dssp             HTSCCTTEEEEEEETTEEEEEESSC--SHHHHHHHHHHHCEECEES-------STTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             HHhhcCceEEEEEEEEEEEEEEcCh--HHHHHHHHHHHCCeEEecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8875432   234566888888753  5788888843789999863       256999999888999999999999998


Q ss_pred             HH
Q psy16848        477 VW  478 (514)
Q Consensus       477 ~l  478 (514)
                      ++
T Consensus       393 ~l  394 (395)
T 1vef_A          393 VL  394 (395)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.96  E-value=6.7e-28  Score=244.40  Aligned_cols=330  Identities=17%  Similarity=0.187  Sum_probs=231.3

Q ss_pred             cCCceeeecccCCC---C--CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-CcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQY---K--VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-EAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~i~~~sGt~a~   88 (514)
                      .+|..++|+.++.+   +  .+|++.+++.+++++++...  ..  +. .+...++++++++++|. +++++++||++|+
T Consensus        25 ~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~--~~--y~-~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~   99 (375)
T 2eh6_A           25 EEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVS--NL--YE-NPWQEELAHKLVKHFWTEGKVFFANSGTESV   99 (375)
T ss_dssp             TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCC--TT--BC-CHHHHHHHHHHHHTSSSCEEEEEESSHHHHH
T ss_pred             CCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccC--cc--cC-CHHHHHHHHHHHhhcCCCCeEEEeCchHHHH
Confidence            36778899975432   3  47899999999998754321  11  12 35678999999999998 7778888899998


Q ss_pred             ccchhhccc-c---CCC-ceEEecCccchhhhhhh-hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         89 DSTLFTLGK-M---IPG-LHYISDAGNHASMIQGI-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        89 ~~~l~~l~~-~---~~g-d~v~~~~~~h~~~~~~~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      ..++.++.. .   .|| |.|++..+.|+.....+ ...+..+.. ..                                
T Consensus       100 ~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~-~~--------------------------------  146 (375)
T 2eh6_A          100 EAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFH-KG--------------------------------  146 (375)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGT-TT--------------------------------
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCcccc-CC--------------------------------
Confidence            888865310 1   378 99999888766544322 222211000 00                                


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                         +......+..++.
T Consensus       147 -------------------------------------------------------------------~~~~~~~~~~~~~  159 (375)
T 2eh6_A          147 -------------------------------------------------------------------FEPLVPGFSYAKL  159 (375)
T ss_dssp             -------------------------------------------------------------------TCSCCSSEEEECT
T ss_pred             -------------------------------------------------------------------CCCCCCCceeCCC
Confidence                                                                               0000011334444


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCc
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQL  317 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~  317 (514)
                      .|.+.+++.+    ++++++|++++++||||.+.+    +++|.++|++||+++|+||+|+ ++..+... . ....+  
T Consensus       160 ~d~~~l~~~l----~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~-~~~~~--  231 (375)
T 2eh6_A          160 NDIDSVYKLL----DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY-A-YQHFN--  231 (375)
T ss_dssp             TCHHHHHTTC----CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G-GGGGT--
T ss_pred             chHHHHHHHh----cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcch-h-hhhcC--
Confidence            4555555444    346899999999999999988    9999999999999999999999 54432111 1 11112  


Q ss_pred             cCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                      ..+|++  ||||++++ |   |++++++++++.+.......  +.+.++..++++.++++...     +..+++++++++
T Consensus       232 ~~~d~~--s~SK~~~~-g~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~  301 (375)
T 2eh6_A          232 LKPDVI--ALAKGLGG-GVPIGAILAREEVAQSFTPGSHGS--TFGGNPLACRAGTVVVDEVE-----KLLPHVREVGNY  301 (375)
T ss_dssp             CCCSEE--EECGGGGT-TSCCEEEEEEHHHHTTCCTTSCCC--SSTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred             CCCCEE--EEcccccC-CCCeEEEEEcHHHHhhhcCCCCCC--CCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            137887  77799986 4   99999888877665532222  34668888888888887653     578888999999


Q ss_pred             HHHHHHhCCCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        395 LRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       395 l~~~L~~~g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      +.+.|++++.....+.+.++++.++.  +..++++.|. ++||.+.++       +.+++|++++..++++++++++++|
T Consensus       302 l~~~L~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~-~~gi~~~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l  371 (375)
T 2eh6_A          302 FKEKLKELGKGKVKGRGLMLGLELER--ECKDYVLKAL-EKGLLINCT-------AGKVLRFLPPLIIQKEHIDRAISVL  371 (375)
T ss_dssp             HHHHHHHTTSSEEEEETTEEEEECSS--CCHHHHHHHH-HTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEEEEEEEEcC--cHHHHHHHHH-HCCCEEecC-------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            99999987654445567788888864  3578889996 899999864       2468999998889999999999999


Q ss_pred             HHH
Q psy16848        475 LAV  477 (514)
Q Consensus       475 ~~~  477 (514)
                      +++
T Consensus       372 ~~~  374 (375)
T 2eh6_A          372 REI  374 (375)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.96  E-value=3.2e-27  Score=244.14  Aligned_cols=346  Identities=15%  Similarity=0.120  Sum_probs=236.6

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.++|+.++.   +++  +|++.+++.+++++..... .+.   ...+...+++++++++++  .++++|++||++|+
T Consensus        41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~---~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~  116 (429)
T 1s0a_A           41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGG---ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAV  116 (429)
T ss_dssp             TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCC-CSS---EECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred             CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc-ccc---cCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Confidence            677888997654   454  7999999999998753311 111   124567889999999994  56778888999999


Q ss_pred             ccchhhccc-cC----CCceEEecCcc-chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         89 DSTLFTLGK-MI----PGLHYISDAGN-HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        89 ~~~l~~l~~-~~----~gd~v~~~~~~-h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      ..++.++.. .+    |||.|++.++. |.....++...+.... +..        .+.   ...+.             
T Consensus       117 ~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~-~~~--------~~~---~~~~~-------------  171 (429)
T 1s0a_A          117 EVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNS-MHS--------LWK---GYLPE-------------  171 (429)
T ss_dssp             HHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTT-TGG--------GGT---TTSCC-------------
T ss_pred             HHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchh-hcc--------ccc---CCCCC-------------
Confidence            988876531 11    58888777764 5444444444332110 000        000   00000             


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe--
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY--  240 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v--  240 (514)
                                                                                              ...+.+  
T Consensus       172 ------------------------------------------------------------------------~~~~~~~~  179 (429)
T 1s0a_A          172 ------------------------------------------------------------------------NLFAPAPQ  179 (429)
T ss_dssp             ------------------------------------------------------------------------CEEECCCC
T ss_pred             ------------------------------------------------------------------------ceEeCCCc
Confidence                                                                                    000000  


Q ss_pred             -------cCCChhHHHHHHhhccCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCC
Q psy16848        241 -------RHNDVNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHG  307 (514)
Q Consensus       241 -------~~~d~~~l~~~l~~~~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~  307 (514)
                             ...|++.+++.+++. .+++++|+++++ +||+|...+    +++|.++|++||+++|+||+|+ ++..|..+
T Consensus       180 ~~~~~~~~~~d~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~  258 (429)
T 1s0a_A          180 SRMDGEWDERDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF  258 (429)
T ss_dssp             SBC-CCCCGGGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred             ccccccchHHHHHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH
Confidence                   013667777777643 235788888888 899998776    9999999999999999999998 55443211


Q ss_pred             CCccccCCCccCceEEEcCCcccccCC--C-eEEEecHHHHHHHHhhc-Cc--eEeccCCcHHHHHHHHHHHHHhhhchH
Q psy16848        308 AGIGERDGQLHNMDIISGTLGKAFGNI--G-GYIVGTKNFIDTIRSYA-AG--FIFTTSLPPTVLAGAREAIRILSSQEG  381 (514)
Q Consensus       308 ~~~~~~~~~~~~~di~~~S~sK~lg~~--G-G~l~~~~~~~~~l~~~~-~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~  381 (514)
                        ..+..+  ..+|++  |+||+++++  + |++++++++++.+.... ..  ...+.+.+++.++++.++++.+.++  
T Consensus       259 --~~~~~~--~~~d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~--  330 (429)
T 1s0a_A          259 --ACEHAE--IAPDIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG--  330 (429)
T ss_dssp             --GGGGGT--CCCSEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC--
T ss_pred             --HhhhcC--CCCCEE--EecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhC--
Confidence              112222  257877  789999762  2 99999999988887531 11  1124567899999999999977543  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC----CCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        382 VELRAKHQDIVAYLRNELIQI----GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       382 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                       +..++++++++++.+.|+++    ++....+.+.++++.++...+..++.+.|+ ++||.+.+.        .+++|++
T Consensus       331 -~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~--------~~~iRis  400 (429)
T 1s0a_A          331 -DWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFV-EQGVWIRPF--------GKLIYLM  400 (429)
T ss_dssp             -HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHH-HTTEECCCB--------TTEEEEC
T ss_pred             -CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcccHHHHHHHHH-HCCCEEecc--------CCEEEEE
Confidence             36788888899999999875    222234456788888875455778999996 899999752        2589999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++..+|++|+++++++|+++++++
T Consensus       401 ~~~~~t~e~i~~~~~~l~~~~~~~  424 (429)
T 1s0a_A          401 PPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhh
Confidence            998899999999999999987554

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.96  E-value=8e-28  Score=243.83  Aligned_cols=328  Identities=11%  Similarity=0.029  Sum_probs=229.2

Q ss_pred             ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEE-eccccccccchh
Q psy16848         18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVF-TSCYVANDSTLF   93 (514)
Q Consensus        18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~-~sGt~a~~~~l~   93 (514)
                      ++..+|..+.+.-+|++.+++.+++..    ..    .....+..+++++++++++|.+   ..+++ +||++|+..++.
T Consensus        18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~----~~----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~   89 (376)
T 3f0h_A           18 QGMLNFTVGPVMSSEEVRAIGAEQVPY----FR----TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM   89 (376)
T ss_dssp             SSCEECSSSSCCCCHHHHHHHTSCCCC----CS----SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred             cCceeecCCCCCCcHHHHHHhcCCCCC----CC----CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence            455666655555678888777664421    11    1123467789999999999875   45554 566999999998


Q ss_pred             hccccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      ++..  +||.|++..+.|.+..  ..+...|.                                                
T Consensus        90 ~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~------------------------------------------------  119 (376)
T 3f0h_A           90 NCFT--KKDKVLVIDGGSFGHRFVQLCEIHEI------------------------------------------------  119 (376)
T ss_dssp             HHCC--TTCCEEEEESSHHHHHHHHHHHHTTC------------------------------------------------
T ss_pred             hccC--CCCeEEEEeCChhhHHHHHHHHHcCC------------------------------------------------
Confidence            8865  9999998876554422  12222333                                                


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-ChhHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQ  250 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~  250 (514)
                                                                                      +++.++.+ +...+.+
T Consensus       120 ----------------------------------------------------------------~~~~v~~~~~~~~d~~  135 (376)
T 3f0h_A          120 ----------------------------------------------------------------PYVALKLEHGKKLTKE  135 (376)
T ss_dssp             ----------------------------------------------------------------CEEEEECCTTCCCCHH
T ss_pred             ----------------------------------------------------------------ceEEEeCCCCCCCCHH
Confidence                                                                            33333311 1222223


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+++..+++++++++++++||+|.++|+++|.++|++||+++|+|++++.+...     + +..  ..+.|++++|+||+
T Consensus       136 ~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~-----~-~~~--~~~~d~~~~s~~K~  207 (376)
T 3f0h_A          136 KLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP-----F-NMN--ECGADVMITGSQKV  207 (376)
T ss_dssp             HHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSC-----C-CHH--HHTCSEEEEETTTT
T ss_pred             HHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcc-----c-ccc--ccCccEEEecCccc
Confidence            344444567899999999999999999999999999999999999999865421     1 111  23578999999999


Q ss_pred             cc-CCC-eEEEecHHHHHHHHhhcCc-e--------------EeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHH
Q psy16848        331 FG-NIG-GYIVGTKNFIDTIRSYAAG-F--------------IFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIV  392 (514)
Q Consensus       331 lg-~~G-G~l~~~~~~~~~l~~~~~~-~--------------~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~  392 (514)
                      ++ +.| |+++.++++++.+...... +              ....+.+...++++.++++.+.+. ++++++++.++++
T Consensus       208 l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  287 (376)
T 3f0h_A          208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQA  287 (376)
T ss_dssp             TCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             ccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            98 556 8999999999888753211 0              001234555557777788876555 5788999999999


Q ss_pred             HHHHHHHHhCCCccccCC-C-cEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        393 AYLRNELIQIGFPVEHTP-S-HIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       393 ~~l~~~L~~~g~~~~~~~-~-~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      +++.+.|+++++.+..+. . .++.+. +...+..++.+.|. ++ ||.++++..   ....+++|++++..+|++|+++
T Consensus       288 ~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~-~~~gi~v~~g~~---~~~~~~lRis~~~~~t~e~i~~  362 (376)
T 3f0h_A          288 ADFRAKIKDLPFELVSESPANGVTSVH-PTTANAYDIFLKLK-DEYGIWICPNGG---EMKDTIFRVGHIGALTHEDNTT  362 (376)
T ss_dssp             HHHHHHTTTSSEEECCSSBBTTEEEEE-ESSSCHHHHHHHHH-HHSSEECEECCG---GGTTTCEEEECCSSCCHHHHHH
T ss_pred             HHHHHHHHHcCCccCccccCceEEEEe-CCCCCHHHHHHHHH-HhCCEEEecCcc---ccCCCEEEEecCCCCCHHHHHH
Confidence            999999998876654432 2 244343 34456788999997 65 999987742   2245799999998899999999


Q ss_pred             HHHHHHHHHHH
Q psy16848        470 FVTDLLAVWKS  480 (514)
Q Consensus       470 ~~~~l~~~l~~  480 (514)
                      ++++|++++++
T Consensus       363 ~~~~l~~~l~~  373 (376)
T 3f0h_A          363 LVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.96  E-value=1.4e-27  Score=244.62  Aligned_cols=339  Identities=13%  Similarity=0.081  Sum_probs=230.5

Q ss_pred             CCceeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhH--cC-C-C-cEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKL--HQ-K-E-AGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~-~-~-~~i~~~sGt~a~   88 (514)
                      .|..++|+..+++  ..+|.+.+++.++++..+....  ...|+......++++.++++  .| . + ..++++++++++
T Consensus        31 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al  108 (400)
T 3asa_A           31 PQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTT--CRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL  108 (400)
T ss_dssp             TTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSC--CCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred             CCCceEeccCCCCCCCCCHHHHHHHHHHHhccccccc--ccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence            3567899976654  3478999999999987543211  11122223457888888888  46 2 3 344444455666


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCC-eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAP-KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..+ ..+..  +||.|+++.+.|.+....++..|.+ ++.++..+.+.+                               
T Consensus       109 ~~~-~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------------  154 (400)
T 3asa_A          109 FRL-LSFFG--PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF-------------------------------  154 (400)
T ss_dssp             HHH-HHHHC--SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTT-------------------------------
T ss_pred             HHH-HHHcC--CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCc-------------------------------
Confidence            554 34544  8999999999999988888777777 665543210000                               


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                ..++  
T Consensus       155 --------------------------------------------------------------------------~~~l--  158 (400)
T 3asa_A          155 --------------------------------------------------------------------------FPEF--  158 (400)
T ss_dssp             --------------------------------------------------------------------------CCCC--
T ss_pred             --------------------------------------------------------------------------ccCh--
Confidence                                                                                      0011  


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                           ++.  ++++++++++++||||.++|   +++|.++|+++|+++|+||+|+ +...+.....+..... ..+.+++
T Consensus       159 -----~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~  230 (400)
T 3asa_A          159 -----PED--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD-ARFCAIE  230 (400)
T ss_dssp             -----CTT--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT-GGGTEEE
T ss_pred             -----hhc--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC-CCCceEE
Confidence                 011  35789999999999999999   6789999999999999999999 4332211111211111 1245799


Q ss_pred             EcCCcccccCCC---eEEEecHHH-------HHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNF-------IDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                      ++|+||++|.+|   ||+++++++       ++.+........+ .+.+.+.+.++.++++..   ++++.+++++++++
T Consensus       231 ~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~  306 (400)
T 3asa_A          231 INSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTF-NGASIPAQEAGVAGLSIL---PQLEAIHYYRENSD  306 (400)
T ss_dssp             EEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHH
T ss_pred             EecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCc-cCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHH
Confidence            999999998667   999998887       5655432222111 146788888888888753   45568889999999


Q ss_pred             HHHHHHHhCCCccccC-CCcEEEEE-eCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q psy16848        394 YLRNELIQIGFPVEHT-PSHIIPIK-IGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFV  471 (514)
Q Consensus       394 ~l~~~L~~~g~~~~~~-~~~~~~i~-l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~  471 (514)
                      ++.+.|++.|+.+..+ .+.++++. +++..+..++.+.|++++||.+.++..|. +.+.+++|+++  ..+++++++++
T Consensus       307 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~-~~~~~~iRis~--~~~~e~i~~~l  383 (400)
T 3asa_A          307 LLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFG-RSGSGFVRFSS--LGKREDILAAC  383 (400)
T ss_dssp             HHHHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGC-GGGTTCEEEEC--CSCHHHHHHHH
T ss_pred             HHHHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhC-CCCCCEEEEEe--eCCHHHHHHHH
Confidence            9999999988877655 45678888 77544556788888656699999987654 33467899995  46899999999


Q ss_pred             HHHHHHHHHc
Q psy16848        472 TDLLAVWKSL  481 (514)
Q Consensus       472 ~~l~~~l~~~  481 (514)
                      ++|++++++.
T Consensus       384 ~~l~~~~~~~  393 (400)
T 3asa_A          384 ERLQMAPALQ  393 (400)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHhh
Confidence            9999888664

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.96  E-value=1.6e-27  Score=246.80  Aligned_cols=346  Identities=20%  Similarity=0.207  Sum_probs=235.0

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~   88 (514)
                      .+|+.++||.++   .+++  ||++.+++.+++++ +...      .+..+...++++++++++ +.+++++++||++|+
T Consensus        53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~  125 (434)
T 2epj_A           53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR-GWLY------GAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEAT  125 (434)
T ss_dssp             TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHH
T ss_pred             CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence            367788999765   4554  79999999999987 3211      124577889999999999 778889999999999


Q ss_pred             ccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++..... .++++.|+.++.+|.....++...+.....+..                 |.                  
T Consensus       126 ~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------p~------------------  170 (434)
T 2epj_A          126 MTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGV-----------------PT------------------  170 (434)
T ss_dssp             HHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CE-----------------ES------------------
T ss_pred             HHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCC-----------------CC------------------
Confidence            999987211 224455555555555444343333321110000                 00                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                 ..|+                               -...+..+..++.+|.+.
T Consensus       171 ---------------------------~~g~-------------------------------~~~~~~~~~~~~~~d~~~  192 (434)
T 2epj_A          171 ---------------------------SAGV-------------------------------PEAVARLTLVTPYNDVEA  192 (434)
T ss_dssp             ---------------------------STTC-------------------------------CHHHHTTEEEEETTCHHH
T ss_pred             ---------------------------CCCC-------------------------------CCcccCceEecCCCCHHH
Confidence                                       0000                               000012355566678888


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di  322 (514)
                      +++.+++.. +++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ |+ .|..  ...+..+.  .+|+
T Consensus       193 le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~--~~~~~~~~--~~di  266 (434)
T 2epj_A          193 LERVFAEYG-DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLE--GAQGYFNI--EGDI  266 (434)
T ss_dssp             HHHHHHHHG-GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTT--HHHHHHTC--CCSE
T ss_pred             HHHHHHhCC-CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcc--hhhHHhCC--CCCe
Confidence            888887532 35789999999999999887    9999999999999999999999 33 2221  11122232  5788


Q ss_pred             EEcCCcccccC--CCeEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +  ||||++++  ++|++++++++++.+...... ...+.+.+++.++++.++++.+.++.   ..++++++.+++.+.|
T Consensus       267 ~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~---~~~~~~~~~~~l~~~L  341 (434)
T 2epj_A          267 I--VLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEP---VYSVSREAAKALEEAA  341 (434)
T ss_dssp             E--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHH
T ss_pred             e--eecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence            7  89999987  339999999888776542211 11244788999999999999875433   6777888888888888


Q ss_pred             HhC----CCcc-ccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        400 IQI----GFPV-EHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       400 ~~~----g~~~-~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      +++    ++.. ..+.+.++++.+++.             ....++.+.|+ ++||.+.++..       ..+|+  +..
T Consensus       342 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~--~~~  411 (434)
T 2epj_A          342 SEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPSNL-------EAVFT--GLP  411 (434)
T ss_dssp             HHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT-------SCEEC--CTT
T ss_pred             HHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEeccCC-------CcEEE--ecc
Confidence            764    5432 345677888888651             23567888896 89999986532       23454  456


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                      +|++++++++++|+++++++
T Consensus       412 ~t~e~i~~~l~~l~~~l~~~  431 (434)
T 2epj_A          412 HQGEALEIAVEGLRSSLKTV  431 (434)
T ss_dssp             CSHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999988764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.96  E-value=2.5e-27  Score=244.51  Aligned_cols=343  Identities=15%  Similarity=0.106  Sum_probs=231.0

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-C-C-CcEEEEeccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-Q-K-EAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-~-~~~i~~~sGt~a   87 (514)
                      +|+.++|+.++.   +++  +|++.+++.+++++.+...    ..++..+...++++.+++++ + . +.+++++||++|
T Consensus        39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a  114 (426)
T 1sff_A           39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC----FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEA  114 (426)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC----TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred             CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCcc----ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHH
Confidence            677888996554   554  7899999999987644321    12334577889999999999 5 4 456777888999


Q ss_pred             cccchh---hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         88 NDSTLF---TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        88 ~~~~l~---~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      +..++.   ++..  +|+.|+.++.+|.....+++..+.+.. ++.              .-.|..              
T Consensus       115 ~~~~~~~a~~~~~--~~~vi~~~p~y~~~~~~~~~~~g~~~~-~~~--------------~~~~~~--------------  163 (426)
T 1sff_A          115 VENAVKIARAATK--RSGTIAFSGAYHGRTHYTLALTGKVNP-YSA--------------GMGLMP--------------  163 (426)
T ss_dssp             HHHHHHHHHHHHT--CCEEEEETTCCCCSSHHHHHHSSCCTT-TTT--------------TSCCCC--------------
T ss_pred             HHHHHHHHHHhhC--CCeEEEECCCcCCCchHhhhhcCCccc-ccc--------------ccCCCC--------------
Confidence            988887   4544  775554555566666666666654310 000              000000              


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec--C
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR--H  242 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~--~  242 (514)
                                                                                            ..++.++  .
T Consensus       164 ----------------------------------------------------------------------~~v~~v~~~~  173 (426)
T 1sff_A          164 ----------------------------------------------------------------------GHVYRALYPC  173 (426)
T ss_dssp             ----------------------------------------------------------------------SSEEEECCCB
T ss_pred             ----------------------------------------------------------------------CCcEEeCCCc
Confidence                                                                                  0000111  0


Q ss_pred             ---C-----ChhHHHHHHhhcc-CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCC
Q psy16848        243 ---N-----DVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGA  308 (514)
Q Consensus       243 ---~-----d~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~  308 (514)
                         +     |++.+++.+++.. .+++++|++++.+|++|...+    +++|.++|++||+++|+||+|+ ++..|... 
T Consensus       174 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-  252 (426)
T 1sff_A          174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-  252 (426)
T ss_dssp             GGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-
T ss_pred             cccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-
Confidence               0     4555666665311 134778888665444996666    9999999999999999999999 33322111 


Q ss_pred             CccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848        309 GIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR  385 (514)
Q Consensus       309 ~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  385 (514)
                       ..+..+  ..+|++  ||||++++ |   |++++++++++.+......  .+.+.+++.++++.++++.+.++.   ..
T Consensus       253 -~~~~~~--~~~di~--s~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~aal~~~~~~~---~~  321 (426)
T 1sff_A          253 -AMEQMG--VAPDLT--TFAKSIAG-GFPLAGVTGRAEVMDAVAPGGLG--GTYAGNPIACVAALEVLKVFEQEN---LL  321 (426)
T ss_dssp             -GGGGTT--SCCSEE--EECGGGGT-SSCCEEEEEEHHHHTTSCTTSBC--CSSSSCHHHHHHHHHHHHHHHHTT---HH
T ss_pred             -hhhhcC--CCCCEE--EEcccccC-CCceEEEEEcHHHHhhhccCCcC--cCCCCCHHHHHHHHHHHHHHHhcC---HH
Confidence             112222  257777  99999998 8   9999999888776542222  245678999999999998775433   66


Q ss_pred             HHHHHHHHHHHHHHHhCC--Cc---cccCCCcEEEEEeC--------CCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        386 AKHQDIVAYLRNELIQIG--FP---VEHTPSHIIPIKIG--------NPALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g--~~---~~~~~~~~~~i~l~--------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                      ++++++++++.+.|++++  ++   ...+.+.++++.+.        +..+..++.+.|+ ++||.+.++..+     .+
T Consensus       322 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~-----~~  395 (426)
T 1sff_A          322 QKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY-----YN  395 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT-----SC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCCCC-----CC
Confidence            777888888888877642  33   22345778888874        2234677889996 889999987641     46


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++|++++..++++++++++++|+++++++
T Consensus       396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          396 VLRILVPLTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            89999988899999999999999998765

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.96  E-value=1.8e-27  Score=244.62  Aligned_cols=333  Identities=15%  Similarity=0.141  Sum_probs=236.4

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l   92 (514)
                      ++..++|+++.. ..+|.+.+++.+++.. ++.....+....+..+..+++++++++++|.+  ++++++||++++..++
T Consensus        27 ~~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al  105 (416)
T 1qz9_A           27 EGVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL  105 (416)
T ss_dssp             TTCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred             CCeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHH
Confidence            456677776554 3478999999999975 22211111112234577889999999999875  5566666777777777


Q ss_pred             hhcccc----CCCce-EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         93 FTLGKM----IPGLH-YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        93 ~~l~~~----~~gd~-v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .++...    .+||. |++++.+|.++..++...                                              
T Consensus       106 ~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~----------------------------------------------  139 (416)
T 1qz9_A          106 SAALRVQATRSPERRVIVTETSNFPTDLYIAEGL----------------------------------------------  139 (416)
T ss_dssp             HHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHH----------------------------------------------
T ss_pred             HhhcccccccCCCCcEEEEcCCCCCchHHHHHHH----------------------------------------------
Confidence            766412    48885 777788998876443210                                              


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhC--CCCEEEecCCCh
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNS--SAPKIIYRHNDV  245 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~--g~~~~~v~~~d~  245 (514)
                                                                                    ....  |++++.++.  .
T Consensus       140 --------------------------------------------------------------~~~~~~g~~~~~v~~--~  155 (416)
T 1qz9_A          140 --------------------------------------------------------------ADMLQQGYTLRLVDS--P  155 (416)
T ss_dssp             --------------------------------------------------------------HHHHCSSCEEEEESS--G
T ss_pred             --------------------------------------------------------------HHHhcCCceEEEeCc--H
Confidence                                                                          0001  334444444  4


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+++.+    ++++++|++++++||||.+.|+++|.++|++||+++|+|++|++|...     + +..  ..++|++++
T Consensus       156 ~~l~~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~-~~~--~~~~d~~~~  223 (416)
T 1qz9_A          156 EELPQAI----DQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP-----V-DLH--QAGADYAIG  223 (416)
T ss_dssp             GGHHHHC----STTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC-----C-CHH--HHTCSEEEE
T ss_pred             HHHHHHh----CCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC-----C-Chh--hcCCCEEEe
Confidence            4444444    346899999999999999999999999999999999999999865431     1 111  225799999


Q ss_pred             CCccccc-C-CC-eEEEecHHHHHHHHhhcCce--------------------Ee-ccCCcHHHHHHHHHHHHHhhhchH
Q psy16848        326 TLGKAFG-N-IG-GYIVGTKNFIDTIRSYAAGF--------------------IF-TTSLPPTVLAGAREAIRILSSQEG  381 (514)
Q Consensus       326 S~sK~lg-~-~G-G~l~~~~~~~~~l~~~~~~~--------------------~~-~~~~~~~~~~a~~~~l~~~~~~~~  381 (514)
                      |+||+++ + .+ |++++++++++.+.....++                    .+ ..+.+...++++.++++.+..+++
T Consensus       224 s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  303 (416)
T 1qz9_A          224 CTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDM  303 (416)
T ss_dssp             CSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCH
T ss_pred             cCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCH
Confidence            9999973 3 44 89999988876665432110                    01 124567777888888988765678


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC----CCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        382 VELRAKHQDIVAYLRNELIQI----GFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       382 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                      ++++++++++++++.+.|++.    |+.+..+.     ++++++.+++   ..++.+.|. ++||.+..       .+.+
T Consensus       304 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~-~~gi~~~~-------~~~~  372 (416)
T 1qz9_A          304 ASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---GYAVIQALI-DRGVIGDY-------REPR  372 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---HHHHHHHHH-TTTEECEE-------ETTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---HHHHHHHHH-hCCcEecc-------CCCC
Confidence            889999999999999999886    77766552     5677888764   678889995 89998742       1356


Q ss_pred             EEEEEeC-CCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        453 KIRLAPT-PFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       453 ~iRl~~~-~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      ++|++++ ..++++|+++++++|++++++..
T Consensus       373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~  403 (416)
T 1qz9_A          373 IMRFGFTPLYTTFTEVWDAVQILGEILDRKT  403 (416)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence            8999998 48899999999999999998753

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.96  E-value=2.9e-27  Score=237.61  Aligned_cols=320  Identities=14%  Similarity=0.117  Sum_probs=234.5

Q ss_pred             CCceeeecccCC-CC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccc
Q psy16848         16 SNRVTCRLSSVQ-YK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~   91 (514)
                      +|+.++||+++. .+ .+|++.+++.+++... ..+       +.... .+++++++++++.+  ..+++++|++++..+
T Consensus        13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~-~~y-------~~~~~-~~lr~~la~~~~~~~~~i~~t~g~~~al~~~   83 (350)
T 3fkd_A           13 LSSEIVNFSTTVWTDGDKDHLEKHLVENLNCI-RHY-------PEPDA-GTLRQMLAKRNSVDNNAILVTNGPTAAFYQI   83 (350)
T ss_dssp             ---CCEECSCCSCCCSCCHHHHHHHHHTGGGG-GSC-------CCTTC-HHHHHHHHHHTTCCGGGEEEESHHHHHHHHH
T ss_pred             ccccEEEccCCCCCCCCCHHHHHHHHHhHhHH-hcC-------CCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence            567899997653 33 4789999988877321 111       11122 68999999999864  566667778888888


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccC-CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRH-NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      +.++.    ||.|+++.++|.+....++..|.+++.++. ++.+.+                                  
T Consensus        84 ~~~l~----gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~----------------------------------  125 (350)
T 3fkd_A           84 AQAFR----GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEA----------------------------------  125 (350)
T ss_dssp             HHHTT----TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGS----------------------------------
T ss_pred             HHHHC----CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccC----------------------------------
Confidence            87764    899999999999998888888877766554 211100                                  


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (350)
T 3fkd_A          126 --------------------------------------------------------------------------------  125 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC-CEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG-ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g-v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                           ..++++++++++++||||.++|.+++.++++.++ .++|+||+|+........  ...... ..+.+++++||||
T Consensus       126 -----~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~-~~~~~i~~~S~sK  197 (350)
T 3fkd_A          126 -----DFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVI--RPADIK-GRKNLVMVYSFSH  197 (350)
T ss_dssp             -----CCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCC--CGGGGT-TCSSEEEEEESHH
T ss_pred             -----ccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcch--hhHHhh-cCCCEEEEecCch
Confidence                 0035789999999999999999999999999886 799999999843322111  111111 2367799999999


Q ss_pred             cccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16848        330 AFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP  405 (514)
Q Consensus       330 ~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  405 (514)
                      .++.+|   ||+++++++++.+......+    +.++..+.++.++++... ...+++++.. ++++++.+.|+++ ++.
T Consensus       198 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~  271 (350)
T 3fkd_A          198 AYGIPGLRIGYIVANKDFMKRVAAFSTPW----AVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVE  271 (350)
T ss_dssp             HHSCGGGCCEEEECCHHHHHHHHTTCCTT----CSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEE
T ss_pred             hccCcchheEeEEeCHHHHHHHHHhCCCC----CCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcE
Confidence            998656   99999999999998766433    678888888888887432 1222333333 8889999999988 888


Q ss_pred             cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        406 VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.++.++++++.++.. +..++.+.|.+++||.+.++..|. ..+.+++|++++   +++++++++++|+++.++.
T Consensus       272 ~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~~g~~f~-~~~~~~iRis~~---~~~~~~~l~~al~~~~~~~  342 (350)
T 3fkd_A          272 VHPSGTTFFLLRLKKG-TAAELKKYMLEEYNMLIRDASNFR-GLDESYVRITTQ---RPAQNQLFIKALETFLEKY  342 (350)
T ss_dssp             ECCCSSSEEEEEESSS-CHHHHHHHHHHTTCEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHTC-
T ss_pred             ECCCCCcEEEEECCCC-CHHHHHHHHHHHCCEEEEeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHHHh
Confidence            7777788888888765 678999999633999999988654 345789999998   8999999999999987654

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.96  E-value=5.2e-28  Score=249.07  Aligned_cols=342  Identities=13%  Similarity=0.112  Sum_probs=232.7

Q ss_pred             CceeeecccCCCC-------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEecccc
Q psy16848         17 NRVTCRLSSVQYK-------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYV   86 (514)
Q Consensus        17 g~~~~d~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~   86 (514)
                      |..++|+..+.|.       .++.+.+++.+.....   ..++....|..++.+++.+++.+..+.+   .++++++|++
T Consensus        37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~  113 (418)
T 3rq1_A           37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE---HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTG  113 (418)
T ss_dssp             GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH---HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred             CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc---cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHH
Confidence            5678999887663       2456666655433211   0111223355566666666666655666   6777888899


Q ss_pred             ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      |+..++.++..  +||.|+++.+.|......++..|.+++.++..+.+                                
T Consensus       114 al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~--------------------------------  159 (418)
T 3rq1_A          114 GIHHLIHNYTE--PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH--------------------------------  159 (418)
T ss_dssp             HHHHHHHHHSC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT--------------------------------
T ss_pred             HHHHHHHHhcC--CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC--------------------------------
Confidence            99999988866  99999999999999888888888877765431000                                


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                   .                                             ..|.+
T Consensus       160 -----------------------------~---------------------------------------------~~d~~  165 (418)
T 3rq1_A          160 -----------------------------N---------------------------------------------NFNHE  165 (418)
T ss_dssp             -----------------------------S---------------------------------------------SBCHH
T ss_pred             -----------------------------C---------------------------------------------CcCHH
Confidence                                         0                                             01455


Q ss_pred             HHHHHHhhccCCCce-EEEEecC-CCCCccccC---HHHHHHHHH------HcCCEEEEecccc-ccccCCCCCCcccc-
Q psy16848        247 HLTQVLENMDVKIPK-LVAFETV-HSMTGAICP---LKELCEVSH------QHGALTFVDEVHA-VGLYGEHGAGIGER-  313 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~-~vv~~~~-~nptG~~~~---l~~l~~l~~------~~gv~li~Dea~~-~g~~g~~~~~~~~~-  313 (514)
                      .+++.+++...++++ ++++++| +||||.+++   +++|+++|+      +||+++|+||+|. ++..+....++... 
T Consensus       166 ~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~  245 (418)
T 3rq1_A          166 AFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKF  245 (418)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGG
T ss_pred             HHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHH
Confidence            566666543222344 7888989 999999999   566667776      8999999999997 32221111111111 


Q ss_pred             CCCccC-ceEEEcCCcccccCCC---eEEEe---cHHHHHHHHhhcCceEe--ccCCcHHHHHHHHHHHHHhh-----hc
Q psy16848        314 DGQLHN-MDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRSYAAGFIF--TTSLPPTVLAGAREAIRILS-----SQ  379 (514)
Q Consensus       314 ~~~~~~-~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~-----~~  379 (514)
                      .+...+ .+++++||||.+|.+|   ||+++   ++++++.+.........  ..+.+...+.++.++++...     ..
T Consensus       246 ~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  325 (418)
T 3rq1_A          246 SHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEA  325 (418)
T ss_dssp             TTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHH
Confidence            111111 1488899999998767   99988   89998888765432211  12467777777777775321     12


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcE-EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        380 EGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI-IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      ...+++++++++++++.+.|+++|+++..+.+++ +++.++   +..++++.| .++||.+.++        .+++|+++
T Consensus       326 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~l-~~~gi~v~~g--------~~~iRis~  393 (418)
T 3rq1_A          326 ERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTD---SANAICEEL-KKEHIYVIAL--------ANGIRIAA  393 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECT---THHHHHHHH-HHTTEECEEC--------SSEEEEEG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCC---CHHHHHHHH-HhCCEEEecC--------CCCeEEEE
Confidence            3346678889999999999998888887777664 445553   367888888 5999999875        35799998


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      + ..+++++++++++|++++++++
T Consensus       394 ~-~~~~~~i~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          394 C-GIPKCQMTGLAEKIYNAMKSLG  416 (418)
T ss_dssp             G-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred             e-cCCHHHHHHHHHHHHHHHHHHh
Confidence            7 5699999999999999998764

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.96  E-value=2.4e-27  Score=241.99  Aligned_cols=301  Identities=16%  Similarity=0.116  Sum_probs=223.0

Q ss_pred             hHHHHHHHHHHhHcCCCc---EEEEeccccccccchhhccccCCCceEEecCccchhhh--hhhhcCCCCeeeccCCChH
Q psy16848         60 LFHEKLEEDVAKLHQKEA---GLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMI--QGIRNSSAPKIIYRHNDVN  134 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~---~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~--~~~~~~~~~~~~~~~~d~~  134 (514)
                      +...++++.+++++|.+.   .++++|||+++..++.++..  +||.|+++.++|.+..  ..++..|.+++.++.++ +
T Consensus        51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~  127 (396)
T 2ch1_A           51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP-D  127 (396)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcC--CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC-C
Confidence            457899999999998753   45566788899999988865  9999999999998863  24455555554433210 0


Q ss_pred             HHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhh
Q psy16848        135 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  214 (514)
Q Consensus       135 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~  214 (514)
                                                                                    +                 
T Consensus       128 --------------------------------------------------------------~-----------------  128 (396)
T 2ch1_A          128 --------------------------------------------------------------R-----------------  128 (396)
T ss_dssp             --------------------------------------------------------------S-----------------
T ss_pred             --------------------------------------------------------------C-----------------
Confidence                                                                          0                 


Q ss_pred             ccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848        215 LVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  294 (514)
Q Consensus       215 l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~  294 (514)
                                                 ..|.+.+++.+++.   ++++|++++++||||.++|+++|.++|+++|+++|+
T Consensus       129 ---------------------------~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~  178 (396)
T 2ch1_A          129 ---------------------------PFSLETLARAIELH---QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIV  178 (396)
T ss_dssp             ---------------------------CCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEE
T ss_pred             ---------------------------CCCHHHHHHHHHhC---CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEE
Confidence                                       12556666666542   478999999999999999999999999999999999


Q ss_pred             eccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHHHHHHHHhhcC---c---------------
Q psy16848        295 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFIDTIRSYAA---G---------------  354 (514)
Q Consensus       295 Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~~l~~~~~---~---------------  354 (514)
                      ||+|++|..     ++ ...  ..++|++++|+||+++ +.| |+++.++++++.+.....   .               
T Consensus       179 Dea~~~g~~-----~~-~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (396)
T 2ch1_A          179 DAVASLCGV-----PF-YMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCY  250 (396)
T ss_dssp             ECTTTBTTB-----CC-CTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCS
T ss_pred             EccccccCC-----cc-chh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhh
Confidence            999996532     11 111  2357999999999875 445 899999988887754210   0               


Q ss_pred             ---eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-----cEEEEEeCCCccHHH
Q psy16848        355 ---FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS-----HIIPIKIGNPALNTK  426 (514)
Q Consensus       355 ---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-----~~~~i~l~~~~~~~~  426 (514)
                         .....+.+...+.++.++++.+.+.++++++++++++++++.+.|+++|+.+..+.+     .++.+.++.+.+..+
T Consensus       251 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (396)
T 2ch1_A          251 DEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWK  330 (396)
T ss_dssp             SSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHH
T ss_pred             cccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHHH
Confidence               001224567777888888887655677889999999999999999988887765543     377788875556788


Q ss_pred             HHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        427 ICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       427 ~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +.+.|++++||.+.++..+   ...+++|+++ +..++++++++++++|+++++++..
T Consensus       331 ~~~~L~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~  385 (396)
T 2ch1_A          331 VSQYAMNNFSLEVQGGLGP---TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP  385 (396)
T ss_dssp             HHHHHHHHHCBCCBCCCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhCCEEEecCccc---cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence            9999963459999876542   2357999999 5566899999999999999988754

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.96  E-value=2.7e-28  Score=252.17  Aligned_cols=337  Identities=12%  Similarity=0.039  Sum_probs=240.0

Q ss_pred             ceeeecccCCC--CC-ChhH--HHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-----CC--Cc---EEEEe
Q psy16848         18 RVTCRLSSVQY--KV-PKGG--RKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-----QK--EA---GLVFT   82 (514)
Q Consensus        18 ~~~~d~~~~~~--~~-~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~--~~---~i~~~   82 (514)
                      ..++||..+.+  ++ +|.+  .+++.+++....  ...    |+......++++.+++++     +.  +.   .++++
T Consensus        47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~--~~~----y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~  120 (430)
T 2x5f_A           47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDE--IFP----YAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTN  120 (430)
T ss_dssp             TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGG--TSS----CCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEES
T ss_pred             CCcEEeeeeeccCCCCchhhHHHHHHHHhcCccc--ccc----cCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcC
Confidence            45799987776  34 4566  565555443211  111    111122456666666666     43  45   67777


Q ss_pred             ccccccccchhhccccCCCceEEecCccchhhhhhhhc-CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         83 SCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRN-SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        83 sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~-~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +|++|+..++.++..  +||.|+++.+.|.+....++. .|.+++.++..+.+                           
T Consensus       121 g~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~---------------------------  171 (430)
T 2x5f_A          121 ALTHGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD---------------------------  171 (430)
T ss_dssp             HHHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT---------------------------
T ss_pred             CchHHHHHHHHHHhC--CCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc---------------------------
Confidence            778899999988866  999999999999999888887 78777655431000                           


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                        .                                             
T Consensus       172 ----------------------------------~---------------------------------------------  172 (430)
T 2x5f_A          172 ----------------------------------G---------------------------------------------  172 (430)
T ss_dssp             ----------------------------------S---------------------------------------------
T ss_pred             ----------------------------------C---------------------------------------------
Confidence                                              0                                             


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHH-----cCCEEEEeccccccccC-CCCCCcc-
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQ-----HGALTFVDEVHAVGLYG-EHGAGIG-  311 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~-----~gv~li~Dea~~~g~~g-~~~~~~~-  311 (514)
                      ..|.+.+++.+++. .++++++++++|+||||.+++   +++|.++|++     ||+++|+||+|+.+..+ ....++. 
T Consensus       173 ~~d~~~l~~~l~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~  251 (430)
T 2x5f_A          173 HYTTDSLVEALQSY-NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFT  251 (430)
T ss_dssp             CBCSHHHHHHHHHC-CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHH
T ss_pred             CcCHHHHHHHHHhc-CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHH
Confidence            01456666666543 135789999999999999999   8999999999     99999999999954432 2122222 


Q ss_pred             ccCCCccCc---eEEEcCCcccccCCC---eEEEe---cHHHHHHHHhhcCc----eEeccCCcHHHHHHHHHHHH-Hhh
Q psy16848        312 ERDGQLHNM---DIISGTLGKAFGNIG---GYIVG---TKNFIDTIRSYAAG----FIFTTSLPPTVLAGAREAIR-ILS  377 (514)
Q Consensus       312 ~~~~~~~~~---di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~~~~l~-~~~  377 (514)
                      .... ..+.   +++++|+||.+|.+|   ||+++   ++++++.+......    .  +.+.+++.+.++.++++ ...
T Consensus       252 ~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~  328 (430)
T 2x5f_A          252 ALTN-LHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSN--ISSGPLPTQSAVKHVLKNNKQ  328 (430)
T ss_dssp             HHHT-TCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHSCHH
T ss_pred             HHhh-ccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcc--cCCCChHHHHHHHHHHccChH
Confidence            2212 1245   788999999998657   99999   99998888764432    2  33678888888888887 320


Q ss_pred             -hchHHHHHHHHHHHHHHHHHHHH----hCCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848        378 -SQEGVELRAKHQDIVAYLRNELI----QIGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGE  451 (514)
Q Consensus       378 -~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~  451 (514)
                       .+.+++.+++++++++++.+.|+    +.++.+..+.++ ++++.++ +.+..++.+.|++++||.+.++       +.
T Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g-------~~  400 (430)
T 2x5f_A          329 FDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL-------NA  400 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC-------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC-------CC
Confidence             12345588889999999999998    567777666655 5778887 4567889999963399999876       25


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +++|++++. .+++++++++++|+++++++
T Consensus       401 ~~iRis~~~-~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          401 TDIRIAFSC-VEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             SEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence            689999984 58999999999999998764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.96  E-value=2.4e-27  Score=245.37  Aligned_cols=346  Identities=17%  Similarity=0.163  Sum_probs=235.2

Q ss_pred             cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~   88 (514)
                      .+|+.|+||.++.+   ++  ||++.+++.+++.+. ..+      ....+...++++++++++ +.++++|++|||+|+
T Consensus        52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~------~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~  124 (434)
T 3l44_A           52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENG-VLY------GTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAV  124 (434)
T ss_dssp             TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHC-SCC------SSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHH
T ss_pred             CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC-cCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHH
Confidence            37788999976543   44  799999999999872 111      123577889999999998 567788889999999


Q ss_pred             ccchhhccccCCCceEEecCcc-chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGN-HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~-h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++..+....+++.|++.++. |.....++...+.....+...+                                   
T Consensus       125 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~-----------------------------------  169 (434)
T 3l44_A          125 MTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPD-----------------------------------  169 (434)
T ss_dssp             HHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBS-----------------------------------
T ss_pred             HHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCC-----------------------------------
Confidence            9999876432356666665554 4445544444433221110000                                   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                 ..+                               ........+..++.+|.+.
T Consensus       170 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~  191 (434)
T 3l44_A          170 ---------------------------SAG-------------------------------VPQSIAQEVITVPFNNVET  191 (434)
T ss_dssp             ---------------------------STT-------------------------------CCHHHHTTEEEECTTCHHH
T ss_pred             ---------------------------cCC-------------------------------CCCcCCCceEecCcccHHH
Confidence                                       000                               0000122466777889999


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+++.. +++++|++++++|++|.+.+    +++|.++|++||++||+||+|+....|..  ...+..+.  .+|++
T Consensus       192 le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~--~~~~~~~~--~~di~  266 (434)
T 3l44_A          192 LKEALDKWG-HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYG--GAQDLLGV--TPDLT  266 (434)
T ss_dssp             HHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSS--CHHHHHTC--CCSEE
T ss_pred             HHHHHHhCC-CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecccc--HHHHHcCC--CCCee
Confidence            999887642 35789999999999999887    99999999999999999999982232221  11223333  57877


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                        ||||.+++ |   |++++++++++.+...... ...+++.+++.++++.++++.+.++.   ..++++++.+++.+.|
T Consensus       267 --t~sK~~~~-G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L  340 (434)
T 3l44_A          267 --ALGKVIGG-GLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEG---LYEKLDELGATLEKGI  340 (434)
T ss_dssp             --EEEGGGGT-TSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHH
T ss_pred             --ehhhhhcC-CcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHH
Confidence              89999985 5   9999999998877653211 12245789999999999999875433   6666777777777766


Q ss_pred             HhC----CCc-cccCCCcEEEEEeCC-------------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        400 IQI----GFP-VEHTPSHIIPIKIGN-------------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       400 ~~~----g~~-~~~~~~~~~~i~l~~-------------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++.    ++. ...+.+.++.+.+..             .....++.+.|+ ++||.+.++.       ...+|++  ..
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-------~~~~rl~--~~  410 (434)
T 3l44_A          341 LEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPSK-------YEAWFLT--TE  410 (434)
T ss_dssp             HHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSST-------TCCEECC--TT
T ss_pred             HHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH-HCCeEEeecC-------CCcEEEe--cc
Confidence            653    332 234567788887732             122367888886 8999997653       2357875  46


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                      +|++++++++++|+++++++
T Consensus       411 ~t~e~i~~~l~~l~~~l~~~  430 (434)
T 3l44_A          411 HTKEDIEYTIEAVGRAFAAL  430 (434)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.96  E-value=1.2e-27  Score=239.84  Aligned_cols=324  Identities=15%  Similarity=0.117  Sum_probs=230.9

Q ss_pred             cccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---c-EEEEeccccccccchhhcccc
Q psy16848         23 LSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---A-GLVFTSCYVANDSTLFTLGKM   98 (514)
Q Consensus        23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~-~i~~~sGt~a~~~~l~~l~~~   98 (514)
                      |..+.+..+|++.+++.+++..    .   . .....+...++++++++++|.+   + .++++||++|+..++.++.  
T Consensus         4 ~~~gp~~~~~~v~~a~~~~~~~----~---~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~--   73 (353)
T 2yrr_A            4 LTPGPTPIPERVQKALLRPMRG----H---L-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD--   73 (353)
T ss_dssp             CSSSSCCCCHHHHGGGGSCCCC----T---T-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS--
T ss_pred             CCCCCCCCCHHHHHHHhccccc----c---c-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc--
Confidence            3444445578888877765542    1   1 1112356789999999999873   4 4555667888888887775  


Q ss_pred             CCCceEEecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848         99 IPGLHYISDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH  176 (514)
Q Consensus        99 ~~gd~v~~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (514)
                       + |.|+++.+.|.+.  ...++..|.+++.++.++ +                                          
T Consensus        74 -~-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~------------------------------------------  108 (353)
T 2yrr_A           74 -R-GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPP-G------------------------------------------  108 (353)
T ss_dssp             -C-CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCT-T------------------------------------------
T ss_pred             -C-CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCC-C------------------------------------------
Confidence             3 8899988888874  333344555554433210 0                                          


Q ss_pred             CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848        177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD  256 (514)
Q Consensus       177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~  256 (514)
                                          +                                            ..|.+.+++.+++. 
T Consensus       109 --------------------~--------------------------------------------~~d~~~l~~~l~~~-  123 (353)
T 2yrr_A          109 --------------------E--------------------------------------------PVDPEAVARALKRR-  123 (353)
T ss_dssp             --------------------S--------------------------------------------CCCHHHHHHHHHHS-
T ss_pred             --------------------C--------------------------------------------CCCHHHHHHHHHhC-
Confidence                                0                                            12556666666542 


Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCCC
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIG  335 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~G  335 (514)
                        ++++|++++++||||.+.|+++|.++|++||+++|+|++|+++..   .  + +..  ..++|++++|++|++ ++.|
T Consensus       124 --~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~---~--~-~~~--~~~~d~~~~s~~K~~~~~~g  193 (353)
T 2yrr_A          124 --RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGML---P--F-SMR--AMGVDYAFTGSQKCLSAPPG  193 (353)
T ss_dssp             --CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS---C--C-CHH--HHTCSEEECCTTSTTCCCSS
T ss_pred             --CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccc---c--c-ccc--ccCceEEEecCcccccCCCc
Confidence              478999999999999999999999999999999999999985532   1  1 111  125799999999976 4456


Q ss_pred             -eEEEecHHHHHHHHh-------------hcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        336 -GYIVGTKNFIDTIRS-------------YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       336 -G~l~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                       |++++++++++.+..             ......+..+.+...+.++.++++.+.+.++++++++++++++++.+.|++
T Consensus       194 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  273 (353)
T 2yrr_A          194 LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA  273 (353)
T ss_dssp             CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence             999999998876641             000111133567777777788888775555788999999999999999998


Q ss_pred             CCCccccCC---CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHH
Q psy16848        402 IGFPVEHTP---SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID-KFVTDLLAV  477 (514)
Q Consensus       402 ~g~~~~~~~---~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id-~~~~~l~~~  477 (514)
                      .|+.+..+.   +.++++.++...+..++.+.|. ++||.+.++..+.   ..+++|++++...+++|++ +++++|+++
T Consensus       274 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~---~~~~iRi~~~~~~~~~~~~~~~~~~l~~~  349 (353)
T 2yrr_A          274 RGFRPYPKASPLPTVLVVRPPEGVDADRLVRALY-AEGVAVAGGIGPT---RGQVLRLGLMGEGARREAYQAFLKALDRA  349 (353)
T ss_dssp             TTCEESCSSSBCTTEEEEECCTTCCHHHHHHHHH-HTTEECEECCGGG---TTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred             CCCccccCccCCCeEEEEECCCCCCHHHHHHHHH-HCCEEEeCCcccc---CCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence            887765542   3466788865556788999996 7899999877432   3568999997778899999 999999998


Q ss_pred             HHH
Q psy16848        478 WKS  480 (514)
Q Consensus       478 l~~  480 (514)
                      ++.
T Consensus       350 l~~  352 (353)
T 2yrr_A          350 LAL  352 (353)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            753

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.96  E-value=3e-27  Score=237.04  Aligned_cols=328  Identities=19%  Similarity=0.260  Sum_probs=220.9

Q ss_pred             eeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccc
Q psy16848         19 VTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGK   97 (514)
Q Consensus        19 ~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~   97 (514)
                      .+|||+++... ..|++++++.+...      .  ...++..+...++++++++++|.++.++++|||+|+..++.++.+
T Consensus         4 ~~i~~~~~~~~~p~~~~~~a~~~~~~------~--~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~   75 (347)
T 1jg8_A            4 MMIDLRSDTVTKPTEEMRKAMAQAEV------G--DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ   75 (347)
T ss_dssp             -CEECSCGGGCCCCHHHHHHHHTCCC------C--CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC
T ss_pred             eEEEeccccCCCCCHHHHHHHhcCCC------C--CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcC
Confidence            35788765544 35666666543211      1  112334567789999999999999999999999999888888765


Q ss_pred             cCCCceEEecCccchhhhh---hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         98 MIPGLHYISDAGNHASMIQ---GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        98 ~~~gd~v~~~~~~h~~~~~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                        |||+|+++.++|.+...   .++..|++++.+ ..+                                          
T Consensus        76 --~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~------------------------------------------  110 (347)
T 1jg8_A           76 --RGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGK------------------------------------------  110 (347)
T ss_dssp             --TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE------------------------------------------
T ss_pred             --CCCEEEEcCcchhhhccccchhhccCeEEEEe-cCC------------------------------------------
Confidence              99999999999987653   234445544433 100                                          


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                           .+                                            ..|.+.+++.+++
T Consensus       111 ---------------------~~--------------------------------------------~~d~~~l~~~i~~  125 (347)
T 1jg8_A          111 ---------------------NG--------------------------------------------AMDPDDVRKAIRP  125 (347)
T ss_dssp             ---------------------TT--------------------------------------------EECHHHHHHHSCC
T ss_pred             ---------------------CC--------------------------------------------ccCHHHHHHHhcc
Confidence                                 00                                            0144555555543


Q ss_pred             cc--CCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        255 MD--VKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       255 ~~--~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      ..  .+++++|++++++||+ |.++|   +++|.++|++||+++|+|++|.++.....+....+.   ....|.++.|+|
T Consensus       126 ~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~s  202 (347)
T 1jg8_A          126 RNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY---AGYADSVMFCLS  202 (347)
T ss_dssp             SCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHH---HHTCSEEEEESS
T ss_pred             ccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHh---cccccEEEEecc
Confidence            10  1368999999999999 99988   578999999999999999998643211111111111   124577777999


Q ss_pred             ccccC-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcc-
Q psy16848        329 KAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPV-  406 (514)
Q Consensus       329 K~lg~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-  406 (514)
                      |++++ .|+++++++++++.+......+..+...+...++++..+++... ..+    ++..++++++.+.|++.++.+ 
T Consensus       203 K~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~----~~~~~~~~~l~~~L~~~~~~~~  277 (347)
T 1jg8_A          203 KGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DRL----KEDHENARFLALKLKEIGYSVN  277 (347)
T ss_dssp             STTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TTH----HHHHHHHHHHHHHHHHHTCBCC
T ss_pred             cccCCCceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHhcCceec
Confidence            99985 33467788888877765433332122345555666666676532 222    223346677788887766654 


Q ss_pred             -ccCCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        407 -EHTPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       407 -~~~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                       .++.++++++.++. ..+..++.+.|. ++||.+.++.       .+++|++++..++++|+++++++|++++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          278 PEDVKTNMVILRTDNLKVNAHGFIEALR-NSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             GGGCCSSEEEEECTTSSSCHHHHHHHHH-HHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceEEEEEcccccCCHHHHHHHHH-HCCCEEecCC-------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence             24567788888874 446788999995 8999998642       358999998889999999999999998765

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.96  E-value=5.6e-27  Score=242.52  Aligned_cols=348  Identities=18%  Similarity=0.136  Sum_probs=236.7

Q ss_pred             CCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.++|+.++.   +++  +|++.+++.+++++....  .   ..+..+...+++++++++++  .+++++++||++|+
T Consensus        41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~---~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~  115 (433)
T 1zod_A           41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL--F---SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESN  115 (433)
T ss_dssp             TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--C---TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHH
T ss_pred             CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccc--c---cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHH
Confidence            677888985433   444  799999999999875421  1   12235678899999999986  45678888999999


Q ss_pred             ccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++..+....+++.|++.+ .+|.....++...+..... ..                .+.                  
T Consensus       116 ~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~-~~----------------~~~------------------  160 (433)
T 1zod_A          116 EAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRK-GV----------------GPA------------------  160 (433)
T ss_dssp             HHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCS-SS----------------CCC------------------
T ss_pred             HHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCcccc-cc----------------CCC------------------
Confidence            99987643111456666555 4555555444433321100 00                000                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------  241 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------  241 (514)
                                                                                      ..|...+.++      
T Consensus       161 ----------------------------------------------------------------~~~~~~v~~~~~~~~~  176 (433)
T 1zod_A          161 ----------------------------------------------------------------AVGSFAIPAPFTYRPR  176 (433)
T ss_dssp             ----------------------------------------------------------------CTTEEEECCCCTTSCC
T ss_pred             ----------------------------------------------------------------CCCceEecCCcccccc
Confidence                                                                            0011111111      


Q ss_pred             CC---------ChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCC
Q psy16848        242 HN---------DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHG  307 (514)
Q Consensus       242 ~~---------d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~  307 (514)
                      ++         |++.+++.+++...+++++|++++++||+|...+    +++|.++|++||+++|+||+|+ ++..|..+
T Consensus       177 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~  256 (433)
T 1zod_A          177 FERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF  256 (433)
T ss_dssp             CEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred             cCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHh
Confidence            11         3667777776533246788999888899997665    9999999999999999999999 55544311


Q ss_pred             CCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848        308 AGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL  384 (514)
Q Consensus       308 ~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  384 (514)
                        ..+..+.  .+|++  |+||++++ |   |++++++++++.+.........+.+.+++.++++.++++.+.++.   .
T Consensus       257 --~~~~~~~--~~di~--s~sK~~~~-G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~---~  326 (433)
T 1zod_A          257 --ACQRDGV--TPDIL--TLSKTLGA-GLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG---L  326 (433)
T ss_dssp             --THHHHTC--CCSEE--EECHHHHT-TSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTT---H
T ss_pred             --HHhhcCC--CCCEE--EecccccC-CCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCC---H
Confidence              1122232  56776  89999987 6   999999999988876322211255778999999999998775543   6


Q ss_pred             HHHHHHHHHHHHHHHHhC--CCc---cccCCCcEEEEEeCCC--------ccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848        385 RAKHQDIVAYLRNELIQI--GFP---VEHTPSHIIPIKIGNP--------ALNTKICDMLLKEKGHYVQPINYPTVPVGE  451 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~~~~i~l~~~--------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~  451 (514)
                      .++++++++++.+.|+++  .++   ...+.+.++++.++..        ....++.+.|+ ++||.+.++..+.   .+
T Consensus       327 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~---~~  402 (433)
T 1zod_A          327 VARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPG---MG  402 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTT---SC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCC---CC
Confidence            677788888888887764  122   2345677888776531        23677889996 8999999876421   24


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +++|++++..++++++++++++|+++++++
T Consensus       403 ~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          403 GVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence            799999998899999999999999988753

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.95  E-value=2.2e-27  Score=243.06  Aligned_cols=345  Identities=18%  Similarity=0.178  Sum_probs=239.5

Q ss_pred             CceeeecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcEE-EEeccccccccc
Q psy16848         17 NRVTCRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAGL-VFTSCYVANDST   91 (514)
Q Consensus        17 g~~~~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~i-~~~sGt~a~~~~   91 (514)
                      +..++|+.+.+++ +|++.+++.+++. .++..++++....+.   .++.+++++++++++|.+... +++||++|+..+
T Consensus        23 ~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a  101 (405)
T 2vi8_A           23 HAKIELIASENFV-SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAV  101 (405)
T ss_dssp             HHSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred             hcceeeccCcccC-CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHH
Confidence            3567899888888 8999999999885 443332222222222   223334557999999988764 468999999999


Q ss_pred             hhhccccCCCceEEecCccchhhhhhh---hcCCC--CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGI---RNSSA--PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~---~~~~~--~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +.++..  +||.|+++.++|.+.....   +..|.  +++.++.+.                                  
T Consensus       102 ~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------------------------------  145 (405)
T 2vi8_A          102 YFTVLE--HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP----------------------------------  145 (405)
T ss_dssp             HHHHCC--TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT----------------------------------
T ss_pred             HHHhcC--CCCEEEEecccccchhcccchhhhccceeEEEeccccc----------------------------------
Confidence            988865  9999999999998875311   11111  222111100                                  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                 ..                                             ...|.+
T Consensus       146 ---------------------------~~---------------------------------------------~~~d~~  153 (405)
T 2vi8_A          146 ---------------------------ET---------------------------------------------HVIDYD  153 (405)
T ss_dssp             ---------------------------TT---------------------------------------------CSBCHH
T ss_pred             ---------------------------cc---------------------------------------------CCcCHH
Confidence                                       00                                             012566


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++.+++.   +++++++++ +|+ |...++++|.++|++||+++|+||+|++|..+..   ... ... ..+|++++|
T Consensus       154 ~l~~~i~~~---~~~~v~~~~-~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~---~~~-~~~-~~~di~~~s  223 (405)
T 2vi8_A          154 DVREKARLH---RPKLIVAAA-AAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAG---LHP-NPV-PYAHFVTTT  223 (405)
T ss_dssp             HHHHHHHHH---CCSEEEECC-SSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTT---SSC-CST-TTCSEEEEE
T ss_pred             HHHHHHHhc---CCeEEEEeC-CCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccC---cCC-Ccc-ccCCEEEEe
Confidence            666666542   357777743 333 5666899999999999999999999997654221   111 111 257899999


Q ss_pred             Cccccc-CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16848        327 LGKAFG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP  405 (514)
Q Consensus       327 ~sK~lg-~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  405 (514)
                      +||+++ +.||++++++++++.+......+.++ +.++..++++.++++.....++++++++++++++++.+.|++.|++
T Consensus       224 ~sK~~~g~~gG~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  302 (405)
T 2vi8_A          224 THKTLRGPRGGMILCQEQFAKQIDKAIFPGIQG-GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFT  302 (405)
T ss_dssp             SSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ccccCCCCCCeEEEEcHHHHHHHHhhhcccccC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999997 66799999999988887654443221 3356666776778877655577889999999999999999998887


Q ss_pred             cccC--CCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCC---CCCCCCcEEEEEeCC----CCCHHHHHHHHHHHH
Q psy16848        406 VEHT--PSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYP---TVPVGEEKIRLAPTP----FHTREMIDKFVTDLL  475 (514)
Q Consensus       406 ~~~~--~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~---~~~~~~~~iRl~~~~----~~t~e~id~~~~~l~  475 (514)
                      +..+  .++++++.++. ..+..++.+.| .++||.+.++..+   ..+...+++|++++.    .++++++++++++|+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~  381 (405)
T 2vi8_A          303 LVSGGTDNHLLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIG  381 (405)
T ss_dssp             EGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred             EecCCCCceEEEEEccCCCCCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHH
Confidence            7643  45678888764 23567888888 4899999987632   112235689999985    578999999999999


Q ss_pred             HHHHHcC
Q psy16848        476 AVWKSLD  482 (514)
Q Consensus       476 ~~l~~~~  482 (514)
                      ++++++.
T Consensus       382 ~~~~~~~  388 (405)
T 2vi8_A          382 LVLKNVG  388 (405)
T ss_dssp             HHHTCTT
T ss_pred             HHHhccc
Confidence            9987653

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.95  E-value=6e-27  Score=243.54  Aligned_cols=360  Identities=16%  Similarity=0.120  Sum_probs=238.2

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC--CCcEEEEecccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ--KEAGLVFTSCYVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~i~~~sGt~a~   88 (514)
                      +|+.++|+.++   .+++  +|++.+++.+++++.+  .  +....+..+...+++++++++++  .+++++++||++|+
T Consensus        48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~--~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~  123 (449)
T 3a8u_X           48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--Y--SPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECA  123 (449)
T ss_dssp             TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--C--CCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHH
T ss_pred             CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--C--ccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHH
Confidence            66778888643   3454  6899999999988743  1  11113445778999999999984  45678888999999


Q ss_pred             ccchhhcccc------CCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEe--eccccc
Q psy16848         89 DSTLFTLGKM------IPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSM  159 (514)
Q Consensus        89 ~~~l~~l~~~------~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~--~~~~~~  159 (514)
                      ..++.++...      .++|.|++ ++.+|.....+++..+.+.....             .....+.+...  +..|..
T Consensus       124 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~-------------~~~~~~~~~~v~~~~~~~~  190 (449)
T 3a8u_X          124 LTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKL-------------FGQPMQDVDHLPHTLLASN  190 (449)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTT-------------TCCCSCSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccc-------------cCCCCCCCeEecCCccccC
Confidence            9998876421      15677776 45555555556665553210000             00000000000  000000


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                   +.     .|+.                                     ...
T Consensus       191 -----------------------------~~-----~~~d-------------------------------------~~~  199 (449)
T 3a8u_X          191 -----------------------------AY-----SRGM-------------------------------------PKE  199 (449)
T ss_dssp             -----------------------------TT-----CSSS-------------------------------------CSS
T ss_pred             -----------------------------cc-----ccCC-------------------------------------hHH
Confidence                                         00     0000                                     000


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccC
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERD  314 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~  314 (514)
                      ....+++.+++.+++...+++++|++++.+|++|.+.+    +++|.++|++||+++|+||+|+ +|..|..+  ..+..
T Consensus       200 ~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~--~~~~~  277 (449)
T 3a8u_X          200 GGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF--GADSF  277 (449)
T ss_dssp             SHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--HHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcch--hhhhc
Confidence            00001566667766432235788999998889998887    9999999999999999999996 66554311  11222


Q ss_pred             CCccCceEEEcCCcccccCC---CeEEEecHHHHHHHHhhcC-------ceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNI---GGYIVGTKNFIDTIRSYAA-------GFIFTTSLPPTVLAGAREAIRILSSQEGVEL  384 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  384 (514)
                      +.  .+|++  |+||++++.   .|++++++++++.+.....       ....+.+.+++.++++.++++.+.++   +.
T Consensus       278 ~~--~~di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~  350 (449)
T 3a8u_X          278 GV--TPDLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE---NL  350 (449)
T ss_dssp             TC--CCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT---TH
T ss_pred             CC--CCCEE--EEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc---CH
Confidence            32  57877  889999862   3888889999988876421       12235577899999999999977544   37


Q ss_pred             HHHHHHHHHHHHHHHHhCC-Cccc---cCCCcEEEEEeCCCc-----cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEE
Q psy16848        385 RAKHQDIVAYLRNELIQIG-FPVE---HTPSHIIPIKIGNPA-----LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIR  455 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~g-~~~~---~~~~~~~~i~l~~~~-----~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iR  455 (514)
                      .++++++.+++.+.|++++ ++..   .+.+.++++.++...     +..++.+.|+ ++||.+.++       + +++|
T Consensus       351 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-------g-~~iR  421 (449)
T 3a8u_X          351 VQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGFYVRFG-------G-DTLQ  421 (449)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTEECEEE-------T-TEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHH-HCCcEEecC-------C-CEEE
Confidence            7888899999999998762 4432   345678888887532     2336888996 789999865       1 5899


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        456 LAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       456 l~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++++..++++++++++++|+++++++
T Consensus       422 is~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          422 FGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            99988899999999999999998764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=1.1e-26  Score=239.40  Aligned_cols=343  Identities=17%  Similarity=0.096  Sum_probs=228.4

Q ss_pred             cCCceeeecccCC---CCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccc
Q psy16848         15 KSNRVTCRLSSVQ---YKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCY   85 (514)
Q Consensus        15 ~~g~~~~d~~~~~---~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt   85 (514)
                      .+|+.++|+.++.   +++   +|++++++.+++++... .+.+   .+..+...++++++++++|.   +++++++||+
T Consensus        39 ~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~---~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~  114 (419)
T 2eo5_A           39 VDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAAN---DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGT  114 (419)
T ss_dssp             TTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCS---CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred             CCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccc---ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchH
Confidence            3677889997654   454   69999999999976432 1111   23356788999999999985   3567778899


Q ss_pred             cccccchhhccccCCCceEEecCc-cchhhhhhhhcCCC-------------CeeeccCCChHHHHHHHHhcccCCCcEE
Q psy16848         86 VANDSTLFTLGKMIPGLHYISDAG-NHASMIQGIRNSSA-------------PKIIYRHNDVNHLTQVLENMDVKIPKLV  151 (514)
Q Consensus        86 ~a~~~~l~~l~~~~~gd~v~~~~~-~h~~~~~~~~~~~~-------------~~~~~~~~d~~~l~~~l~~~~~~~~~~~  151 (514)
                      +|+..++..+... +||.|++.++ +|.....+....+.             .++.++.++                   
T Consensus       115 ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------  174 (419)
T 2eo5_A          115 EAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPN-------------------  174 (419)
T ss_dssp             HHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCC-------------------
T ss_pred             HHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCc-------------------
Confidence            9999998765421 2777777665 45455544444332             222222211                   


Q ss_pred             EeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHh
Q psy16848        152 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIR  231 (514)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~  231 (514)
                          .|..                                   +.|..                                
T Consensus       175 ----~~~~-----------------------------------~~g~~--------------------------------  183 (419)
T 2eo5_A          175 ----PYRN-----------------------------------PWHIN--------------------------------  183 (419)
T ss_dssp             ----SSSC-----------------------------------TTCCC--------------------------------
T ss_pred             ----cccc-----------------------------------ccccc--------------------------------
Confidence                0100                                   00000                                


Q ss_pred             hCCC-CE-EEecCCChhHHH-HHHhhccC-CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccc
Q psy16848        232 NSSA-PK-IIYRHNDVNHLT-QVLENMDV-KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGL  302 (514)
Q Consensus       232 ~~g~-~~-~~v~~~d~~~l~-~~l~~~~~-~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~  302 (514)
                        +. +. .... .|++.++ +.+++... +++++|++++++|++|...+    +++|.++|++||+++|+||+|+ ++.
T Consensus       184 --~~~~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~  260 (419)
T 2eo5_A          184 --GYENPSELVN-RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGR  260 (419)
T ss_dssp             --TTTCHHHHHH-HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             --ccccchhhHH-HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCcc
Confidence              00 00 0000 0234455 55543211 34678888888888998665    9999999999999999999999 555


Q ss_pred             cCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh
Q psy16848        303 YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS  378 (514)
Q Consensus       303 ~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  378 (514)
                      .|..+  ..+..+.  .+|++  ||||++++ |    |+++++++++ .+ ...  ...+.+.+++.++++.++++...+
T Consensus       261 ~g~~~--~~~~~~~--~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~--~~~t~~~n~~~~~aa~aal~~~~~  329 (419)
T 2eo5_A          261 TGKLF--AIENFNT--VPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGM--HSNTFGGNALACAIGSKVIDIVKD  329 (419)
T ss_dssp             TSSSS--GGGGGTC--CCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHHHHHHHHH
T ss_pred             Ccchh--hHHhcCC--CCCEE--EecccccC-CccceEEEEEchHhh-cC-Ccc--cCCCCCCCHHHHHHHHHHHHHHHH
Confidence            44311  1122232  56777  89999986 5    9999988876 55 212  222457789999999999986532


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcEEEEEeC-CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        379 QEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIG-NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~i~l~-~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                           .+++++++++++.+.|+++ +....+.+.++++.+. +..... +.+.|+ ++||.+.++.       .+++|++
T Consensus       330 -----~~~~~~~~~~~l~~~L~~~-~~~~~~~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~-------~~~lRis  394 (419)
T 2eo5_A          330 -----LLPHVNEIGKIFAEELQGL-ADDVRGIGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG-------RSAIRVI  394 (419)
T ss_dssp             -----HHHHHHHHHHHHHHHHTTS-SSEEEEETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET-------TTEEEEC
T ss_pred             -----HHHHHHHHHHHHHHHHHHh-hhheEeeeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC-------CCEEEEE
Confidence                 7788899999999999886 4444566778888874 222345 888886 8999998652       4689999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++..+|++++++++++|+++++++
T Consensus       395 ~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          395 PPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhc
Confidence            998899999999999999988764

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.95  E-value=2.6e-27  Score=246.25  Aligned_cols=343  Identities=13%  Similarity=0.109  Sum_probs=232.1

Q ss_pred             cCCceeeecccCC---CCC--ChhHH-H-HHHH---HHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEE
Q psy16848         15 KSNRVTCRLSSVQ---YKV--PKGGR-K-CLGE---ALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVF   81 (514)
Q Consensus        15 ~~g~~~~d~~~~~---~~~--~~~~~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~   81 (514)
                      .+|+.|+||.++.   .++  ||++. + ++.+   ++++... .+ +   ....+...+++++++++++   .++++|+
T Consensus        51 ~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~-~~-~---~~~~~~~~~la~~la~~~~~~~~~~v~~~  125 (449)
T 2cjg_A           51 ITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKP-SN-S---DVYSVAMARFVETFARVLGDPALPHLFFV  125 (449)
T ss_dssp             TTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCC-CT-T---TCCCHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCC-CC-c---ccCCHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            3567778885433   233  79999 9 9999   7776421 11 1   1245678899999999984   5678888


Q ss_pred             eccccccccchhhccc-cC----------C-CceEEecCcc-chhhhhhhhcCCC-------------CeeeccCCC--h
Q psy16848         82 TSCYVANDSTLFTLGK-MI----------P-GLHYISDAGN-HASMIQGIRNSSA-------------PKIIYRHND--V  133 (514)
Q Consensus        82 ~sGt~a~~~~l~~l~~-~~----------~-gd~v~~~~~~-h~~~~~~~~~~~~-------------~~~~~~~~d--~  133 (514)
                      +||++|+..++..+.. .+          + ||.|++.++. |.....++...+.             .++.++.+|  .
T Consensus       126 ~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  205 (449)
T 2cjg_A          126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGL  205 (449)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTC
T ss_pred             CchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchh
Confidence            9999999999875431 11          2 7777777664 5445544454443             111111111  0


Q ss_pred             HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848        134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  213 (514)
Q Consensus       134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~  213 (514)
                      +.- . ...                                                                       
T Consensus       206 ~~~-~-~~~-----------------------------------------------------------------------  212 (449)
T 2cjg_A          206 DEP-A-MAA-----------------------------------------------------------------------  212 (449)
T ss_dssp             CHH-H-HHH-----------------------------------------------------------------------
T ss_pred             hcc-c-cch-----------------------------------------------------------------------
Confidence            000 0 000                                                                       


Q ss_pred             hccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcC
Q psy16848        214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHG  289 (514)
Q Consensus       214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~g  289 (514)
                                                -...+.+.+++.+++. .+++++|++++++|++|...+    +++|+++|++||
T Consensus       213 --------------------------~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g  265 (449)
T 2cjg_A          213 --------------------------LEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFD  265 (449)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTT
T ss_pred             --------------------------hhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCC
Confidence                                      0000234466666542 356899999999999997665    999999999999


Q ss_pred             CEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccccCCCeEEEecHHHHHHHHh--hc-CceEeccCCcHHH
Q psy16848        290 ALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRS--YA-AGFIFTTSLPPTV  365 (514)
Q Consensus       290 v~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~GG~l~~~~~~~~~l~~--~~-~~~~~~~~~~~~~  365 (514)
                      +++|+||+|+ +|..|..+  ..+..+.  .+|++  |+||++ + -|++++++++++.+..  .. .....+.+.+++.
T Consensus       266 ~lli~DEv~~g~g~~g~~~--~~~~~~~--~~di~--t~sK~l-~-iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~  337 (449)
T 2cjg_A          266 ALLIFDEVQTGCGLTGTAW--AYQQLDV--APDIV--AFGKKT-Q-VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTD  337 (449)
T ss_dssp             CEEEEECTTTTTTTTSSSS--THHHHTC--CCSEE--EECGGG-S-SEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHH
T ss_pred             cEEEEeccccCCCccCcce--eecccCC--CceEE--EecCcc-c-EEEEEECHHHhhhhhhcccCCcccccCCCCCHHH
Confidence            9999999999 55554321  1122333  67887  789999 4 5788888888775332  11 1112245778999


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--C----CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEE
Q psy16848        366 LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--G----FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYV  439 (514)
Q Consensus       366 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v  439 (514)
                      ++++.++++.+.++   ++.++++++++++.+.|+++  +    +....+.+.++.+.+++.....++++.|+ ++||.+
T Consensus       338 ~~aa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~Gv~v  413 (449)
T 2cjg_A          338 MVRARRILEVIEAE---GLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLW-QRAVIV  413 (449)
T ss_dssp             HHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHHHHHHHHHHH-HTTEEC
T ss_pred             HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHHHHHHHHHHH-HCCeEE
Confidence            99999999977543   36788888888988888764  2    32345567788888875445678999997 899999


Q ss_pred             ecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        440 QPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       440 ~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .++       +.+++|++++..+|++++++++++|+++++++
T Consensus       414 ~~~-------g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          414 LPA-------GADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             EEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            864       24689999998999999999999999988753

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.95  E-value=6.2e-27  Score=243.00  Aligned_cols=228  Identities=16%  Similarity=0.130  Sum_probs=163.1

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM  320 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~  320 (514)
                      |.+.+++.+++ .+++++++++++|+||||.++|   +++|.++|++||+++|+||+|+.+..+....+..   ....+.
T Consensus       192 d~~~l~~~l~~-~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~  267 (444)
T 3if2_A          192 DFEALENLPAL-KEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH---LNWDNN  267 (444)
T ss_dssp             CHHHHHTCHHH-HTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC---CCCCTT
T ss_pred             CHHHHHHHHHh-cCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc---ccCCCC
Confidence            44455544322 2456899999999999999999   8999999999999999999998433211111111   112367


Q ss_pred             eEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHH-HHHHHHHHHHHH
Q psy16848        321 DIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVE-LRAKHQDIVAYL  395 (514)
Q Consensus       321 di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~~~l  395 (514)
                      +++++|+||. +.+|   ||+++++++++.+.......  +.+.++..+.++...++... .....+ ++++++++++.+
T Consensus       268 ~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
T 3if2_A          268 TILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVV--NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLA  344 (444)
T ss_dssp             EEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHH--HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred             EEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            8999999997 4445   99999999999887765544  33566677777777766321 112222 566777888888


Q ss_pred             HHHHHhC----CCccccCC-CcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCC-------CCcEEEEEeCCCC
Q psy16848        396 RNELIQI----GFPVEHTP-SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPV-------GEEKIRLAPTPFH  462 (514)
Q Consensus       396 ~~~L~~~----g~~~~~~~-~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~-------~~~~iRl~~~~~~  462 (514)
                      .+.|.+.    ++.+..+. +.++++.++. ..+..++.+.| .++||.+.++..|....       ..+++|++++.  
T Consensus       345 ~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--  421 (444)
T 3if2_A          345 VKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERL-KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--  421 (444)
T ss_dssp             HHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHH-HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--
T ss_pred             HHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHH-HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--
Confidence            8877663    44444444 4577788875 45688899999 49999999998764321       23699999995  


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      +++++++++++|+++++++
T Consensus       422 ~~e~i~~~l~~l~~~~~~~  440 (444)
T 3if2_A          422 DEQTLIDGIKVIGEVVREL  440 (444)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998765

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.95  E-value=9.1e-27  Score=234.70  Aligned_cols=282  Identities=17%  Similarity=0.110  Sum_probs=208.4

Q ss_pred             HHHHHHHHHhHcCCC--cEEEEeccccccccchhhccccCCC-ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         62 HEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGKMIPG-LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        62 ~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~~~~g-d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      ..++++.++++++.+  ..++++++++++..++.++..  +| |.|+++.++|.+....++..|.+++.++..+.     
T Consensus        60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~--~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-----  132 (356)
T 1fg7_A           60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN-----  132 (356)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTT-----
T ss_pred             HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhC--CCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCC-----
Confidence            578999999999864  455556667888888888865  99 99999999999988777777776655443100     


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                               .                      
T Consensus       133 ---------------------------------------------------------~----------------------  133 (356)
T 1fg7_A          133 ---------------------------------------------------------W----------------------  133 (356)
T ss_dssp             ---------------------------------------------------------S----------------------
T ss_pred             ---------------------------------------------------------C----------------------
Confidence                                                                     0                      


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCH---HHHHHHHHHcCCEEEEe
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL---KELCEVSHQHGALTFVD  295 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l---~~l~~l~~~~gv~li~D  295 (514)
                                             ..|.+.++    +..+ +++++++++++||||.++|.   ++|.++|+ +|+++|+|
T Consensus       134 -----------------------~~d~~~l~----~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~D  184 (356)
T 1fg7_A          134 -----------------------QLDLQGIS----DKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVAD  184 (356)
T ss_dssp             -----------------------CCCHHHHH----TSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEE
T ss_pred             -----------------------CCCHHHHH----HHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEE
Confidence                                   01233333    3323 58899999999999999995   55556666 99999999


Q ss_pred             ccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      |+|+.+..+   .++..... ..+.++++.|+||++|.+|   ||+++++++++.+......+    +.+++.+.++.++
T Consensus       185 e~~~~~~~~---~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~a~~~~  256 (356)
T 1fg7_A          185 EAYIEFCPQ---ASLAGWLA-EYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY----PLSTPVADIAAQA  256 (356)
T ss_dssp             CTTGGGSGG---GCSGGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS----CSCHHHHHHHHHH
T ss_pred             ccchhhcCC---CcHHHHHh-hCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC----CCCHHHHHHHHHH
Confidence            999943311   12222211 2356899999999998667   99999999999888765444    5778888888888


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhCC--CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEec-ccCCCCCC
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQIG--FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQP-INYPTVPV  449 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~-~~~~~~~~  449 (514)
                      ++....+++++.+++++++++++.+.|++++  +.+.++.+.++++.++   +..++.+.| .++||.+++ +..+..  
T Consensus       257 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~L-~~~gI~v~~~g~~~~~--  330 (356)
T 1fg7_A          257 LSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK---ASSAVFKSL-WDQGIILRDQNKQPSL--  330 (356)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET---THHHHHHHH-HHTTEECEECTTSTTC--
T ss_pred             hcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC---CHHHHHHHH-HHCCEEEEECCCCCCC--
Confidence            7643212367788899999999999999885  3444556778888886   467899999 499999998 665432  


Q ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        450 GEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       450 ~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                       ++++|++++   +++|+++++++|++
T Consensus       331 -~~~iRis~~---~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          331 -SGCLRITVG---TREESQRVIDALRA  353 (356)
T ss_dssp             -TTEEEEECC---CHHHHHHHHHHHHT
T ss_pred             -CCeEEEEeC---CHHHHHHHHHHHHh
Confidence             359999998   68999999999875

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.95  E-value=3.5e-27  Score=241.76  Aligned_cols=342  Identities=18%  Similarity=0.147  Sum_probs=238.4

Q ss_pred             ceeeecc-cCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCcch--HHH-HHHHHHHhHcCCCcE-EEEeccccccccc
Q psy16848         18 RVTCRLS-SVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGNSL--FHE-KLEEDVAKLHQKEAG-LVFTSCYVANDST   91 (514)
Q Consensus        18 ~~~~d~~-~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~~~~~la~~~~~~~~-i~~~sGt~a~~~~   91 (514)
                      ..++|+. +..++ +|++.+++.+++.. +...++.+....|...  ..+ ..++++++++|.+.. ++++|||+|+..+
T Consensus        23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~  101 (407)
T 2dkj_A           23 REGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAV  101 (407)
T ss_dssp             HTSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred             hcceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHH
Confidence            4567774 44555 89999999998864 3333332222223322  222 234589999998766 6678999999999


Q ss_pred             hhhccccCCCceEEecCccchhhh---hhhhcCCCC--eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMI---QGIRNSSAP--KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~---~~~~~~~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +.++..  +||.|+++.++|.+..   .+++..|..  ++.++..                                   
T Consensus       102 ~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------------------  144 (407)
T 2dkj_A          102 YMALME--PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVR-----------------------------------  144 (407)
T ss_dssp             HHHHCC--TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCC-----------------------------------
T ss_pred             HHHhcC--CCCEEEEecccccCccchHHHHHhcCceEEEEecCCC-----------------------------------
Confidence            988865  9999999999998874   233332321  1111000                                   


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                       +         ..                                             ...|.+
T Consensus       145 -----------------~---------~~---------------------------------------------~~~d~~  153 (407)
T 2dkj_A          145 -----------------P---------DT---------------------------------------------ELIDLE  153 (407)
T ss_dssp             -----------------T---------TT---------------------------------------------SSCCHH
T ss_pred             -----------------c---------cc---------------------------------------------CccCHH
Confidence                             0         00                                             012566


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++.+++.   +++++++++++||  ...++++|.++|++||+++|+||+|+.|...... .. ...   ..+|++++|
T Consensus       154 ~l~~~l~~~---~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~-~~~---~~~di~~~s  223 (407)
T 2dkj_A          154 EVRRLALEH---RPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGL-HP-NPL---PYAHVVTST  223 (407)
T ss_dssp             HHHHHHHHH---CCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTC-SC-CCT---TTCSEEEEE
T ss_pred             HHHHHHhhc---CCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCc-cC-Ccc---ccccEEEEe
Confidence            677766532   4688888888886  6778999999999999999999999975532110 00 011   137999999


Q ss_pred             Cccccc-CCCeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        327 LGKAFG-NIGGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       327 ~sK~lg-~~GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      +||+++ +.||+++++ +++++.+......+. ..+.++..++++.++++.....++++++++++++++++.+.|++.|+
T Consensus       224 ~sK~l~g~~~G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  302 (407)
T 2dkj_A          224 THKTLRGPRGGLILSNDPELGKRIDKLIFPGI-QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGY  302 (407)
T ss_dssp             SSGGGCCCSCEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccCCCCCceEEEECCHHHHHHHHhhhcccc-cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999885 456999999 799888876554432 12345556667778887764567788999999999999999999888


Q ss_pred             cccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCC---CCCCCcEEEEEeCC----CCCHHHHHHHHHHH
Q psy16848        405 PVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPT---VPVGEEKIRLAPTP----FHTREMIDKFVTDL  474 (514)
Q Consensus       405 ~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~---~~~~~~~iRl~~~~----~~t~e~id~~~~~l  474 (514)
                      ++..  +.++++++.++. ..+..++.+.| .++||.+.++..+.   .+...+++|++++.    .++++++++++++|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l  381 (407)
T 2dkj_A          303 RIVTGGTDNHLFLVDLRPKGLTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELI  381 (407)
T ss_dssp             EEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHH
T ss_pred             eeecCCCCceEEEEECcccCCCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHH
Confidence            7763  456788888864 23577888888 48999999876431   12235689999964    26899999999999


Q ss_pred             HHHHHH
Q psy16848        475 LAVWKS  480 (514)
Q Consensus       475 ~~~l~~  480 (514)
                      ++++++
T Consensus       382 ~~~~~~  387 (407)
T 2dkj_A          382 DRALLE  387 (407)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999887

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=242.71  Aligned_cols=337  Identities=14%  Similarity=0.116  Sum_probs=231.1

Q ss_pred             hHHHHHHHHHHHhCC-CCCCcCcccCcchHHHHHHHHHHhHcC-----CCcEEEEeccccccccchhhccccCCC----c
Q psy16848         33 GGRKCLGEALEKFGT-GAGGTRNISGNSLFHEKLEEDVAKLHQ-----KEAGLVFTSCYVANDSTLFTLGKMIPG----L  102 (514)
Q Consensus        33 ~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~i~~~sGt~a~~~~l~~l~~~~~g----d  102 (514)
                      ++.+++.++++..+. ....+....|..++.+++++.+.+..|     .+..++++++++++..++.++..  +|    |
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~~~d  182 (498)
T 3ihj_A          105 DAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS--GGGKSRT  182 (498)
T ss_dssp             HHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC--CCGGGSE
T ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC--CCCCCCC
Confidence            444667778876542 233444455667788888888877764     23456566667788888888876  66    4


Q ss_pred             eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848        103 HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  182 (514)
Q Consensus       103 ~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (514)
                      .|+++.+.|.....+++..|++++.++.+..                                                 
T Consensus       183 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~-------------------------------------------------  213 (498)
T 3ihj_A          183 GVMIPIPQYPLYSAVISELDAIQVNYYLDEE-------------------------------------------------  213 (498)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECBGG-------------------------------------------------
T ss_pred             EEEEeCCCchhHHHHHHHcCCEEEEeecccc-------------------------------------------------
Confidence            9999999999999999998988887765310                                                 


Q ss_pred             eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC-Cce
Q psy16848        183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK-IPK  261 (514)
Q Consensus       183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~-~~~  261 (514)
                                 ++++                                             -|++.+++.+++.... +++
T Consensus       214 -----------~~~~---------------------------------------------~d~~~le~~l~~~~~~~~~k  237 (498)
T 3ihj_A          214 -----------NCWA---------------------------------------------LNVNELRRAVQEAKDHCDPK  237 (498)
T ss_dssp             -----------GTTB---------------------------------------------CCHHHHHHHHHHHTTTSEEE
T ss_pred             -----------ccCC---------------------------------------------CCHHHHHHHHHhhhccCCCe
Confidence                       0000                                             1455555555543222 478


Q ss_pred             EEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCC-C-----ccCceEEEcCCccc
Q psy16848        262 LVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDG-Q-----LHNMDIISGTLGKA  330 (514)
Q Consensus       262 ~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~-~-----~~~~di~~~S~sK~  330 (514)
                      ++++++|+||||.+++   +++|+++|++||+++|+||+|..+.++.  ...++..... .     .....++++||||.
T Consensus       238 ~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~  317 (498)
T 3ihj_A          238 VLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKG  317 (498)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSS
T ss_pred             EEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccc
Confidence            9999999999999999   6889999999999999999999655532  2222211100 0     01235888999999


Q ss_pred             c-cCCC---eEEE---ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH-------h--hhchHHHHHHHHHHHHHH
Q psy16848        331 F-GNIG---GYIV---GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI-------L--SSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       331 l-g~~G---G~l~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~-------~--~~~~~~~~~~~~~~~~~~  394 (514)
                      + |.+|   ||++   .++++++.+......   ....+...+.++..+++.       +  ......++++++++++++
T Consensus       318 ~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~  394 (498)
T 3ihj_A          318 YMGECGYRGGYMEVINLHPEIKGQLVKLLSV---RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKL  394 (498)
T ss_dssp             TTCCSSSCCEEEEEESCCHHHHHHHHHHHHH---SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcccceEEEEEecCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9 5445   9987   588888888765432   234566666666665531       0  012345677889999999


Q ss_pred             HHHHHHhC-CCccccCCCcEEE-EEeCCC-----------ccHHHH-HHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        395 LRNELIQI-GFPVEHTPSHIIP-IKIGNP-----------ALNTKI-CDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       395 l~~~L~~~-g~~~~~~~~~~~~-i~l~~~-----------~~~~~~-~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      +.+.|+++ |+.+..+.++++. +.+..+           .+..++ +..+++++||.+.|+..|....+..++|+++. 
T Consensus       395 l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~-  473 (498)
T 3ihj_A          395 TEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL-  473 (498)
T ss_dssp             HHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-
T ss_pred             HHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-
Confidence            99999998 8888777776543 344321           123443 56665689999999998765556789999996 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHc
Q psy16848        461 FHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~~  481 (514)
                       .+++++++++++|+++++++
T Consensus       474 -~~~e~l~~~i~~L~~~~~~~  493 (498)
T 3ihj_A          474 -PPVEKLKTVLQKVKDFHINF  493 (498)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHHH
Confidence             78999999999999988765

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.95  E-value=1.4e-26  Score=233.04  Aligned_cols=325  Identities=14%  Similarity=0.078  Sum_probs=229.1

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhhcc
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFTLG   96 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~l~   96 (514)
                      ++.|......-+|++.+++.+.+.....+.+ . ......+..+++++++++++|.+   .+++++|||+|+..++.++.
T Consensus         5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~   82 (362)
T 3ffr_A            5 KIYFTPGPSELYPTVRQHMITALDEKIGVIS-H-RSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV   82 (362)
T ss_dssp             CEEECSSSCCCCTTHHHHHHHHHHTTTTTSC-T-TSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC
T ss_pred             ceeccCCCcCCCHHHHHHHHHHhcCCccCcC-C-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc
Confidence            3455444445578999888888875221111 1 11123467788999999999863   35667778889999998887


Q ss_pred             ccCCCceEEecCccchh-hhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhh
Q psy16848         97 KMIPGLHYISDAGNHAS-MIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ  175 (514)
Q Consensus        97 ~~~~gd~v~~~~~~h~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
                      .  + +.+++....|.. ....++..|.+++.++.++                                           
T Consensus        83 ~--~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-------------------------------------------  116 (362)
T 3ffr_A           83 E--K-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAF-------------------------------------------  116 (362)
T ss_dssp             S--S-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT-------------------------------------------
T ss_pred             C--C-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCC-------------------------------------------
Confidence            5  6 656665555542 1223333344433322100                                           


Q ss_pred             cCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc
Q psy16848        176 HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  255 (514)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~  255 (514)
                                         +.                                             ..|.+.++      
T Consensus       117 -------------------~~---------------------------------------------~~d~~~l~------  126 (362)
T 3ffr_A          117 -------------------GK---------------------------------------------GFYPADIT------  126 (362)
T ss_dssp             -------------------TC---------------------------------------------CCCGGGCC------
T ss_pred             -------------------CC---------------------------------------------CCCHHHHh------
Confidence                               00                                             01333333      


Q ss_pred             cCCCceEEEEecCCCCCccccCHHHHHHHHHHc-CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-C
Q psy16848        256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQH-GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-N  333 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~-gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~  333 (514)
                      .+++++++++++++||+|.++|+++|.++|++| |+++|+|++|+.+..        +...  ...|++++|+||+++ +
T Consensus       127 ~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~--------~~~~--~~~d~~~~s~~K~~~~~  196 (362)
T 3ffr_A          127 VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP--------KFDW--TKIDSVFFSVQKCFGLP  196 (362)
T ss_dssp             CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS--------CCCT--TSCSEEEEETTSTTCCC
T ss_pred             ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc--------ccCh--hHCcEEEEecccccCCC
Confidence            356789999999999999999999999999999 999999999986543        1111  127899999999998 5


Q ss_pred             CC-eEEEecHHHHHHHHhhcCc-------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy16848        334 IG-GYIVGTKNFIDTIRSYAAG-------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVA  393 (514)
Q Consensus       334 ~G-G~l~~~~~~~~~l~~~~~~-------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  393 (514)
                      .| |+++.++++++.+.....+                   .....+.+...+.++.++++.+...++++++++.+++++
T Consensus       197 ~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  276 (362)
T 3ffr_A          197 AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAA  276 (362)
T ss_dssp             SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            67 8999999988877654320                   000224566777777788886655567889999999999


Q ss_pred             HHHHHHHhC-CCccccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        394 YLRNELIQI-GFPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       394 ~l~~~L~~~-g~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      ++.+.|+++ |+.+..+     ...++++.+++  +..++.+.|. ++||.+.++..+   .+++++|++++..++++++
T Consensus       277 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~~~~g~~~---~~~~~iRis~~~~~~~e~i  350 (362)
T 3ffr_A          277 LINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--LPGEINKILE-PFDMAVGAGYGS---KKETQIRIANFPAHSLEQV  350 (362)
T ss_dssp             HHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--CHHHHHHHHG-GGTEEEEECSGG---GTTTEEEEECCTTSCHHHH
T ss_pred             HHHHHHHHccCceeccCChhhcCCceEEEecCC--CHHHHHHHHH-HCCeEEecCccc---cCCCEEEEECCCCCCHHHH
Confidence            999999998 8776542     23467777776  6789999996 779999987543   2357999999988999999


Q ss_pred             HHHHHHHHHHH
Q psy16848        468 DKFVTDLLAVW  478 (514)
Q Consensus       468 d~~~~~l~~~l  478 (514)
                      ++++++|++++
T Consensus       351 ~~l~~~l~~~~  361 (362)
T 3ffr_A          351 HKLVQTLKEKI  361 (362)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=5.8e-28  Score=246.97  Aligned_cols=340  Identities=17%  Similarity=0.146  Sum_probs=216.9

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHHHh-CCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKF-GTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l   92 (514)
                      ++..++|++++. ..+|++.+++.+++.+. +..........+..+..+++++++++++|.+  .+++++||++|+..++
T Consensus        19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~   97 (400)
T 3vax_A           19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIAL   97 (400)
T ss_dssp             ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHH
T ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHH
Confidence            334567776554 34789999999999853 2221111112223566889999999999875  5677777889999999


Q ss_pred             hhcc----ccCCCc-eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         93 FTLG----KMIPGL-HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        93 ~~l~----~~~~gd-~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .++.    +  +|| .|+++.++|+++...++..                                              
T Consensus        98 ~~l~~~~~~--~gd~~Vl~~~~~~~~~~~~~~~~----------------------------------------------  129 (400)
T 3vax_A           98 LGLAPYGER--TGRRHIITSAIEHKAVLEPLEHL----------------------------------------------  129 (400)
T ss_dssp             HTTHHHHHH--HTCCEEEEETTSCHHHHHHHHHH----------------------------------------------
T ss_pred             HHHHHhhcc--CCCCEEEECccccHhHHHHHHHH----------------------------------------------
Confidence            8886    5  999 9999999999876544321                                              


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-Chh
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVN  246 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~  246 (514)
                                                                                     ...|++++.++.+ +..
T Consensus       130 ---------------------------------------------------------------~~~g~~~~~v~~~~~~~  146 (400)
T 3vax_A          130 ---------------------------------------------------------------AGRGFEVDFLTPGPSGR  146 (400)
T ss_dssp             ---------------------------------------------------------------HTTTCEEEEECCCTTCC
T ss_pred             ---------------------------------------------------------------HhcCCeEEEEccCCCCC
Confidence                                                                           1123344444421 222


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+.+.+++..+++++++++++++||+|.+.|+++|.++|++||+++|+|++|+.+...      .+..  .. +|++++|
T Consensus       147 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~------~~~~--~~-~d~~~~s  217 (400)
T 3vax_A          147 ISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP------GDLT--TP-IDMISIS  217 (400)
T ss_dssp             CCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG------GGGG--SC-CSEEEEE
T ss_pred             cCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC------cChh--hc-CcEEEEe
Confidence            2233444444567899999999999999999999999999999999999999865431      1111  22 7899999


Q ss_pred             CcccccCCC-eEEE-ecHH-HH---HHHHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        327 LGKAFGNIG-GYIV-GTKN-FI---DTIRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       327 ~sK~lg~~G-G~l~-~~~~-~~---~~l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      +||.+|+.| |+++ .+++ +.   ..+......     .....+.+...++++.++++.+. +++++++++++++++++
T Consensus       218 ~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l  296 (400)
T 3vax_A          218 GHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRL  296 (400)
T ss_dssp             TGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence            999878766 8877 7651 11   111111110     00022456777777778887663 46788999999999999


Q ss_pred             HHHHHhCCCccccCCC----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC------------CC----CcEEE
Q psy16848        396 RNELIQIGFPVEHTPS----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP------------VG----EEKIR  455 (514)
Q Consensus       396 ~~~L~~~g~~~~~~~~----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~------------~~----~~~iR  455 (514)
                      .+.|+..++.+..+.+    +++.+.++. .+..++.+.| . +||.++++..|...            ..    .+++|
T Consensus       297 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L-~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  373 (400)
T 3vax_A          297 LAGLASTSFQVNGDQDHVVPHILNLSFED-VDAEAFLVTL-K-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLR  373 (400)
T ss_dssp             HHHHTTTTCEECSCTTSBCTTEEEEECTT-CCHHHHHHHH-H-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEE
T ss_pred             HHhhCCCCEEEeCCcccCCCCEEEEEeCC-CCHHHHHHHH-h-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEE
Confidence            9999833777655543    477777764 4577888888 5 89998876533210            11    47999


Q ss_pred             EEe-CCCCCHHHHHHHHHHHHHHHHH
Q psy16848        456 LAP-TPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       456 l~~-~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +++ +..++++++++++++|++++++
T Consensus       374 ls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          374 FSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EEEEEC--------------------
T ss_pred             EEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            999 8888999999999999988653

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.95  E-value=1.7e-26  Score=237.57  Aligned_cols=216  Identities=15%  Similarity=0.099  Sum_probs=160.0

Q ss_pred             CCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC
Q psy16848        257 VKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~  333 (514)
                      +++++++++++++||||.+++   +++|.++|++||+++|+||+|+....+....+.   .....+.+++++||||. +.
T Consensus       178 ~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK~-~~  253 (417)
T 3g7q_A          178 GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEA---RPLWNPNIILCMSLSKL-GL  253 (417)
T ss_dssp             CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC---CCCCCTTEEEEEESGGG-TC
T ss_pred             ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccc---ccCCCCCEEEEEechhc-cC
Confidence            456899999999999999999   899999999999999999999843321111111   11123678999999994 55


Q ss_pred             CC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHH-HHHHHHHHHHHHHHHHHhC----CC
Q psy16848        334 IG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVE-LRAKHQDIVAYLRNELIQI----GF  404 (514)
Q Consensus       334 ~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~~----g~  404 (514)
                      +|   ||+++++++++.+......+  +.+.++..+.++.+.++... .....+ ++++++++++.+.+.|.+.    ++
T Consensus       254 ~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  331 (417)
T 3g7q_A          254 PGSRCGIIIANDKTITAIANMNGII--SLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC  331 (417)
T ss_dssp             TTSCCEEEECCHHHHHHHHHHHHHH--CCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred             CCcceEEEEeCHHHHHHHHHhhcce--eeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            56   99999999999888766554  33567777777777776321 111222 5667788888888888763    46


Q ss_pred             ccccCC-CcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCC------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        405 PVEHTP-SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVG------EEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       405 ~~~~~~-~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~------~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .+..+. +.++++.++. ..+..++.+.|. ++||.+.++..|.....      .+++|++++.  +++++++++++|++
T Consensus       332 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~  408 (417)
T 3g7q_A          332 LIHKPEGAIFLWLWFKDLPITTELLYQRLK-ARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAE  408 (417)
T ss_dssp             EEECCCBSSEEEEECTTCSSCHHHHHHHHH-HTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHH
T ss_pred             eeeCCCcceEEEEEcCCCCCCHHHHHHHHH-HCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            655454 4577788876 456888999994 99999999886543221      5799999984  89999999999999


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      +++++
T Consensus       409 ~l~~~  413 (417)
T 3g7q_A          409 EIERA  413 (417)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.95  E-value=2e-27  Score=248.41  Aligned_cols=362  Identities=17%  Similarity=0.181  Sum_probs=230.8

Q ss_pred             cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a   87 (514)
                      .+|+.|+||.++.+   ++  ||++.+++.+++...+...+.........++.+++++++++++  +.++++|++||++|
T Consensus        60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA  139 (472)
T 1ohv_A           60 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCS  139 (472)
T ss_dssp             TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHH
T ss_pred             CCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhH
Confidence            36788888865443   44  8999999999875432111111111123567777777777776  56788999999999


Q ss_pred             cccchhhcccc------C-----------------CC---c-eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHH
Q psy16848         88 NDSTLFTLGKM------I-----------------PG---L-HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  140 (514)
Q Consensus        88 ~~~~l~~l~~~------~-----------------~g---d-~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l  140 (514)
                      ++.+++.+...      +                 ||   + .|..+..+|.....+++..+.....             
T Consensus       140 ~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~-------------  206 (472)
T 1ohv_A          140 NENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIH-------------  206 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHH-------------
T ss_pred             HHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCcccc-------------
Confidence            99999876310      0                 24   4 4555667777777777776643210             


Q ss_pred             HhcccCCCc--EEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        141 ENMDVKIPK--LVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       141 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                       ........  .+.+. .|     ..|....  +  .++.                                        
T Consensus       207 -~~~~~~~~~~~~~~p-~~-----~~~~~~~--~--~~~~----------------------------------------  235 (472)
T 1ohv_A          207 -KIDIPSFDWPIAPFP-RL-----KYPLEEF--V--KENQ----------------------------------------  235 (472)
T ss_dssp             -HTTSCCCCCCEECCC-CC-----CSSGGGC--H--HHHH----------------------------------------
T ss_pred             -ccCCCCCCCcccCCC-cc-----cCccccc--c--ccch----------------------------------------
Confidence             00000000  00000 00     0000000  0  0000                                        


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC--CCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEE
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV--KIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALT  292 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~--~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~l  292 (514)
                                          .....|.+.+++.+++...  .++++|++++++|++|.+.+    +++|+++|++||+++
T Consensus       236 --------------------~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll  295 (472)
T 1ohv_A          236 --------------------QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF  295 (472)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred             --------------------hHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence                                0000145666777765321  26899999999999998877    999999999999999


Q ss_pred             EEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc-cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848        293 FVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAR  370 (514)
Q Consensus       293 i~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~  370 (514)
                      |+||+|+ +|..|...  ..+..+....+|++  ||||++ +  ||+++ ++++. .+......  .+.+.+++.++++.
T Consensus       296 i~DEv~~g~g~~g~~~--~~~~~gv~~~~Di~--t~sK~~l~--GG~~~-~~~~~-~~~~~~~~--~T~~~~~~~~aaa~  365 (472)
T 1ohv_A          296 LVDEVQTGGGSTGKFW--AHEHWGLDDPADVM--TFSKKMMT--GGFFH-KEEFR-PNAPYRIF--NTWLGDPSKNLLLA  365 (472)
T ss_dssp             EEECTTTTTTTTSSSS--GGGGGCCSSCCSEE--EECGGGSS--EEEEE-CGGGS-CSSSSSSC--CSSSSCHHHHHHHH
T ss_pred             EEeCcccCCCCCCCch--hccccCCCCCCCEE--EEcccccc--CCccC-chhhc-cccccccc--CccCccHHHHHHHH
Confidence            9999998 55443211  11222321127888  889995 4  57776 65542 11111111  23467899999999


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCc----cccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccC
Q psy16848        371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFP----VEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY  444 (514)
Q Consensus       371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~----~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~  444 (514)
                      ++|+.+.++.   +.++++++++++.+.|+++  +++    ...+.+.++.+.+++.....++++.|+ ++||.+.++  
T Consensus       366 aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~--  439 (472)
T 1ohv_A          366 EVINIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIAR-NKGVMLGGC--  439 (472)
T ss_dssp             HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHHHHHHHHHHHH-HTTEECEEE--
T ss_pred             HHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCChhHHHHHHHHHH-HCCeEEecC--
Confidence            9999875544   6788888888888888765  233    234557788888765445678999997 899999863  


Q ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        445 PTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       445 ~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                           +.+++|++++..+|++|+++++++|+++++++
T Consensus       440 -----g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          440 -----GDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             -----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             -----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                 24689999999999999999999999988764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.95  E-value=7.3e-27  Score=239.06  Aligned_cols=321  Identities=17%  Similarity=0.160  Sum_probs=216.2

Q ss_pred             CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEe
Q psy16848         27 QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYIS  106 (514)
Q Consensus        27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~  106 (514)
                      +|..++.+.+++.+++..+....+...+..+..+..+++++++++++|.++.++++||++|+..++.++..  +||+|++
T Consensus        31 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~--~gd~vi~  108 (398)
T 2rfv_A           31 IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ--QGDHIVS  108 (398)
T ss_dssp             CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEE
T ss_pred             CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEE
Confidence            34444445555555554322222222222334678899999999999998899999999999999988866  9999999


Q ss_pred             cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848        107 DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  186 (514)
Q Consensus       107 ~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (514)
                      +.+.|.++...++.                                                                  
T Consensus       109 ~~~~~~~~~~~~~~------------------------------------------------------------------  122 (398)
T 2rfv_A          109 ASAIYGCTHAFLSH------------------------------------------------------------------  122 (398)
T ss_dssp             ESSSCHHHHHHHHT------------------------------------------------------------------
T ss_pred             cCCCcccHHHHHHH------------------------------------------------------------------
Confidence            99999988755410                                                                  


Q ss_pred             cccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe
Q psy16848        187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE  266 (514)
Q Consensus       187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~  266 (514)
                                                                .+...|.+++.++..|.+.+++.++    +++++|+++
T Consensus       123 ------------------------------------------~~~~~g~~~~~v~~~d~~~l~~~i~----~~~~~v~~~  156 (398)
T 2rfv_A          123 ------------------------------------------SMPKFGINVRFVDAAKPEEIRAAMR----PETKVVYIE  156 (398)
T ss_dssp             ------------------------------------------HHHHTTCEEEEECTTSHHHHHHHCC----TTEEEEEEE
T ss_pred             ------------------------------------------HHHHcCCEEEEeCCCCHHHHHHhcC----CCCeEEEEE
Confidence                                                      0112244444555445555555443    358999999


Q ss_pred             cCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecH
Q psy16848        267 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTK  342 (514)
Q Consensus       267 ~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~  342 (514)
                      +++||+|.++|+++|.++|++||+++|+||+|+.+..+.       ..  ..++|+++.|+||+++++    ||++++++
T Consensus       157 ~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-------~~--~~~~di~~~s~sK~~~~~g~~~~G~~~~~~  227 (398)
T 2rfv_A          157 TPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-------PL--QLGADIVVHSVTKYINGHGDVIGGIIVGKQ  227 (398)
T ss_dssp             SSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-------GG--GGTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-------ch--hhCCcEEEEeCcccccCCCCceEEEEEECH
Confidence            999999999999999999999999999999999665421       11  236899999999999653    49999998


Q ss_pred             HHHH-HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC---------------Ccc
Q psy16848        343 NFID-TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG---------------FPV  406 (514)
Q Consensus       343 ~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------------~~~  406 (514)
                      ++++ .+......+ .+.+.++..++++.++++..     ....++..++.+.+.+.|++.+               +.+
T Consensus       228 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~  301 (398)
T 2rfv_A          228 EFIDQARFVGLKDI-TGGCMSPFNAWLTLRGVKTL-----GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL  301 (398)
T ss_dssp             HHHHHHHHTHHHHT-TCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred             HHHHHHHHHHHHhC-CCCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHH
Confidence            8876 555433221 02356788888888777643     2344556666777777776642               111


Q ss_pred             cc----CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCC------C--------------CCCCcEEEEEeCCC
Q psy16848        407 EH----TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPT------V--------------PVGEEKIRLAPTPF  461 (514)
Q Consensus       407 ~~----~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~------~--------------~~~~~~iRl~~~~~  461 (514)
                      ..    ..++++.+.+++. .....+.+.+ ...|+.+++|..+.      .              ...++.+|++++..
T Consensus       302 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~-~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~  380 (398)
T 2rfv_A          302 GQRQMSLPGGIISFEIAGGLEAGRRMINSV-ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLE  380 (398)
T ss_dssp             HHHHCSSCCSEEEEEETTHHHHHHHHHTTC-SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSS
T ss_pred             HHhhCCCCceEEEEEEcCCHHHHHHHHHhC-CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCC
Confidence            11    2467888888742 2233444444 24577776664311      0              01268999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAV  477 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~  477 (514)
                      ++++++++++++|+++
T Consensus       381 ~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          381 DPEDIINDLEHAIRKA  396 (398)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999888753

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.95  E-value=1.1e-26  Score=240.23  Aligned_cols=345  Identities=18%  Similarity=0.113  Sum_probs=239.9

Q ss_pred             cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~   88 (514)
                      .+|+.|+||.++.+   ++  ||++.+++.+++.+... .      +...+...++++++++++ +.++++|++||++|+
T Consensus        50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~------~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~  122 (429)
T 3k28_A           50 IDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS-F------GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEAT  122 (429)
T ss_dssp             TTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC-C------SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred             CCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC-c------CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHH
Confidence            37888999976543   44  79999999999987321 1      123477889999999998 567788899999999


Q ss_pred             ccchhhccccCCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGKMIPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++..+....+++.|++ ++.+|.....++...+.....+....                                   
T Consensus       123 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~-----------------------------------  167 (429)
T 3k28_A          123 MSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPD-----------------------------------  167 (429)
T ss_dssp             HHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CC-----------------------------------
T ss_pred             HHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCC-----------------------------------
Confidence            999977643224555555 56666666655555444322111000                                   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                 ..+                               .....+..++.++.+|.+.
T Consensus       168 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~  189 (429)
T 3k28_A          168 ---------------------------SPG-------------------------------VPEGVAKNTITVAYNDLES  189 (429)
T ss_dssp             ---------------------------CTT-------------------------------CCHHHHTTEEEEETTCHHH
T ss_pred             ---------------------------cCC-------------------------------CCCcccCceeecCCCCHHH
Confidence                                       000                               0000123566777889999


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+++.. +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+....|..  ...+..+.  .+|++
T Consensus       190 le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~--~~~~~~~~--~~di~  264 (429)
T 3k28_A          190 VKYAFEQFG-DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYN--CGQGYYGV--TPDLT  264 (429)
T ss_dssp             HHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTT--HHHHHHTC--CCSEE
T ss_pred             HHHHHHhCC-CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcc--hHHHHhCC--CCcee
Confidence            999887642 35789999999999999988    99999999999999999999972122211  11222333  57887


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                        ||||++++ |   |++++++++++.+...... ...+++.+++.++++.++++...    ++..++++++++++.+.|
T Consensus       265 --t~sK~~~~-G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L  337 (429)
T 3k28_A          265 --CLGKVIGG-GLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGL  337 (429)
T ss_dssp             --EECGGGGT-TSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             --hhhhhhcC-CCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence              89999976 5   9999999988877543221 12245789999999999998653    457888888888888888


Q ss_pred             HhC----CC-ccccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        400 IQI----GF-PVEHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       400 ~~~----g~-~~~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++.    +. ....+.+.++.+.+...             ....++++.|+ ++||.+.++.       ...+|+++  .
T Consensus       338 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-------~~~~r~~~--~  407 (429)
T 3k28_A          338 RKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ-------FEGLFLST--V  407 (429)
T ss_dssp             HHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST-------TSCBCCCT--T
T ss_pred             HHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC-------CCCEEEEC--C
Confidence            764    22 22345677877776421             12467888886 8999997642       23567754  5


Q ss_pred             CCHHHHHHHHHHHHHHHHHc
Q psy16848        462 HTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~  481 (514)
                      +|++++++++++|+++++++
T Consensus       408 ~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          408 HSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.95  E-value=6.6e-27  Score=235.06  Aligned_cols=330  Identities=12%  Similarity=0.074  Sum_probs=226.2

Q ss_pred             ceeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-EEEEeccccccccchhhc
Q psy16848         18 RVTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-GLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        18 ~~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~i~~~sGt~a~~~~l~~l   95 (514)
                      ..++||.++.+. .+|++.+++.+++.  +     +...++..+..+++++++++++|.+. .++++|||+|+..++.++
T Consensus         7 ~~~id~~~~~~~~~~~~v~~a~~~~~~--~-----~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~   79 (356)
T 1v72_A            7 PPALGFSSDNIAGASPEVAQALVKHSS--G-----QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM   79 (356)
T ss_dssp             CCCCBCSCGGGCCCCHHHHHHHHHTTS--S-----CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS
T ss_pred             CceEeeccCCccCCCHHHHHHHHhhcc--C-----cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHh
Confidence            457899776555 37899988888642  1     11234456788999999999999655 477788999999999888


Q ss_pred             cccCCCceEEecCccchhhhhh--hhcC--CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         96 GKMIPGLHYISDAGNHASMIQG--IRNS--SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        96 ~~~~~gd~v~~~~~~h~~~~~~--~~~~--~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      ..  +||.|+++.++|.+....  ++..  |.+++.++.++ .                                     
T Consensus        80 ~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------------------------------  119 (356)
T 1v72_A           80 TP--PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA-A-------------------------------------  119 (356)
T ss_dssp             CC--TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGG-G-------------------------------------
T ss_pred             cC--CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCC-C-------------------------------------
Confidence            65  999999999999998766  6665  66666544310 0                                     


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH-
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ-  250 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~-  250 (514)
                                                                                            .-|.+.+++ 
T Consensus       120 ----------------------------------------------------------------------~~d~~~l~~~  129 (356)
T 1v72_A          120 ----------------------------------------------------------------------KLDIVRLRER  129 (356)
T ss_dssp             ----------------------------------------------------------------------CCCHHHHHHH
T ss_pred             ----------------------------------------------------------------------eEcHHHHHHH
Confidence                                                                                  013444444 


Q ss_pred             HHhhc---cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        251 VLENM---DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       251 ~l~~~---~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      .+++.   ..+++++|++++++| +|.+++   +++|.++|++||+++|+|++|..+.....+... ...++....|+++
T Consensus       130 ~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~~~~d~~~  207 (356)
T 1v72_A          130 TREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWKAGVDALS  207 (356)
T ss_dssp             TTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGGGTCCEEE
T ss_pred             hhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhhhcCCEEE
Confidence            44321   112578999999876 999777   799999999999999999999843211111011 1111113578888


Q ss_pred             cCCcccccCCC-eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        325 GTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       325 ~S~sK~lg~~G-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      .|+||+.++.| |++++++++++.+.......+ .....  ...++...++.+.+....+..++.+++++++.+.|+++ 
T Consensus       208 ~s~sK~g~~~G~g~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~  284 (356)
T 1v72_A          208 FGATKNGVLAAEAIVLFNTSLATEMSYRRKRAG-HLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG  284 (356)
T ss_dssp             ECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTT-CCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             EecccCCCcCccEEEEECHHHHhhHHHHhhccC-chhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence            89999944445 688889888887764422110 11111  12233334555544334557778889999999999886 


Q ss_pred             CCcccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       403 g~~~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      |+.+.. +.++++++.++     .++.+.|. ++||.+.++.+ .    .+++|++++..++++++++++++|++++++
T Consensus       285 g~~~~~~~~~~~~~~~~~-----~~~~~~l~-~~gi~v~~g~~-~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          285 GVEVLGGTEANILFCRLD-----SAMIDALL-KAGFGFYHDRW-G----PNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             TEEEESCCCSSEEEEEEC-----HHHHHHHH-HTTCBCBCSSS-S----TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             CcEEccCCCccEEEEEcC-----HHHHHHHH-hcCeEEecccc-C----CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            777643 34567777764     37888885 89999987663 1    579999999889999999999999987654

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.95  E-value=2.9e-26  Score=236.76  Aligned_cols=345  Identities=19%  Similarity=0.154  Sum_probs=234.6

Q ss_pred             cCCceeeecccCC---CCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-CCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQ---YKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-KEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~---~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~i~~~sGt~a~   88 (514)
                      .+|+.++||.++.   .++  ||++.+++.+++++... ++      ...+...+++++++++++ .+++++++||++|+
T Consensus        49 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~------~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~  121 (427)
T 3fq8_A           49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS-FG------APCALENVLAEMVNDAVPSIEMVRFVNSGTEAC  121 (427)
T ss_dssp             TTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC-CS------SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred             CCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC-cC------CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence            3778899997653   344  79999999999986321 11      145788999999999984 66788889999999


Q ss_pred             ccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++..... .++++.|+.++.+|.....+....+.....+..                 |.                  
T Consensus       122 ~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------~~------------------  166 (427)
T 3fq8_A          122 MAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGL-----------------PS------------------  166 (427)
T ss_dssp             HHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTC-----------------CS------------------
T ss_pred             HHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCC-----------------CC------------------
Confidence            999854321 224445555666666555444333322111000                 00                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                 ..|                               .....+..+..++.+|++.
T Consensus       167 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~  188 (427)
T 3fq8_A          167 ---------------------------SPG-------------------------------VPKKTTANTLTTPYNDLEA  188 (427)
T ss_dssp             ---------------------------CSS-------------------------------SCHHHHTTEEEEETTCHHH
T ss_pred             ---------------------------CCC-------------------------------CCCcccCceeecCCCCHHH
Confidence                                       000                               0000123466777789999


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+++.. +++++|++++++|++|.+.+    +++|.++|++||++||+||+|+....|..  ...+..+.  .+|+.
T Consensus       189 le~~l~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~--~~~~~~~~--~~di~  263 (427)
T 3fq8_A          189 VKALFAENP-GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYG--GVQEKFGV--TPDLT  263 (427)
T ss_dssp             HHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTT--HHHHHTTC--CCSEE
T ss_pred             HHHHHHhCC-CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcc--hhhHhcCC--CCChh
Confidence            999987643 45899999999999999999    99999999999999999999981122211  11223333  57877


Q ss_pred             EcCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                        |+||++++ |   |++++++++++.+...... ...+.+.+++.++++.++++.+.++.   +.++++++.+++.+.|
T Consensus       264 --t~sK~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~~~~~l  337 (427)
T 3fq8_A          264 --TLGKIIGG-GLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGL  337 (427)
T ss_dssp             --EECGGGGT-TSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHH
T ss_pred             --hhhhhhhC-CcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence              88899985 5   9999999998877653211 11244679999999999999775443   5666777777777766


Q ss_pred             HhC----CCcc-ccCCCcEEEEEeCCCc-------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        400 IQI----GFPV-EHTPSHIIPIKIGNPA-------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       400 ~~~----g~~~-~~~~~~~~~i~l~~~~-------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++.    ++.. ....+.++++.+....             ...++.+.|+ ++||.+.++..       .  |+.++..
T Consensus       338 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~~-------~--r~~~~~~  407 (427)
T 3fq8_A          338 LAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQF-------E--AGFTSLA  407 (427)
T ss_dssp             HHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT-------S--CEECCTT
T ss_pred             HHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHH-HCCcEEecCCC-------C--CEEeeCc
Confidence            653    3322 2335668888775321             1357888886 89999986542       1  4556677


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~  480 (514)
                      +|++++++++++|++++++
T Consensus       408 ~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          408 HTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            8999999999999998875

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.95  E-value=3.6e-26  Score=236.23  Aligned_cols=346  Identities=16%  Similarity=0.129  Sum_probs=229.0

Q ss_pred             cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~   88 (514)
                      .+|+.|+||.++.+   ++  ||++.+++.+++++.. .+      ....+...++++++++++ +.++++|++|||+|+
T Consensus        50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~  122 (429)
T 4e77_A           50 VDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGL-SF------GAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEAT  122 (429)
T ss_dssp             TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-CC------SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred             CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc-cc------CCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHH
Confidence            37788899976543   33  7999999999998732 11      123477889999999998 567788899999999


Q ss_pred             ccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ..++..+.. .++++.|+.+..+|......+...+.....+..                 |.                  
T Consensus       123 ~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------~~------------------  167 (429)
T 4e77_A          123 MSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQ-----------------PN------------------  167 (429)
T ss_dssp             HHHHHHHHHHHCCCEEEEETTCCCC-----------------------------------CC------------------
T ss_pred             HHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCC-----------------CC------------------
Confidence            999875432 224455555666666655443322221110000                 00                  


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                 ..+                               ........+..++.+|.+.
T Consensus       168 ---------------------------~~~-------------------------------~~~~~~~~~~~~~~~d~~~  189 (429)
T 4e77_A          168 ---------------------------SPG-------------------------------VPTDFAKHTLTCTYNDLAS  189 (429)
T ss_dssp             ---------------------------CTT-------------------------------SCGGGGTTEEEECTTCHHH
T ss_pred             ---------------------------cCC-------------------------------CCCccCCceeecCCCCHHH
Confidence                                       000                               0001123466777889999


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      +++.+++.. +++++|+++++++++|.+.+    +++|.++|++||++||+||+|+....|..  ...+..+.  .+|++
T Consensus       190 le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~--~~~~~~~~--~pdi~  264 (429)
T 4e77_A          190 VRQAFEQYP-QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALA--GAQDYYHV--IPDLT  264 (429)
T ss_dssp             HHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTT--CHHHHTTC--CCSEE
T ss_pred             HHHHHHhcC-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcc--hHHHhcCC--CCCee
Confidence            999987642 45788999998888898888    99999999999999999999992133321  12233333  67887


Q ss_pred             EcCCcccccC--CCeEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       324 ~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                        |+||.+++  +.|++++++++++.+...... ...+.+.+++.++++.++++.+.++.   ..++++++.+++++.|+
T Consensus       265 --t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~  339 (429)
T 4e77_A          265 --CLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVG---VYETLTELTDSLATGLR  339 (429)
T ss_dssp             --EEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHH
T ss_pred             --eecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHH
Confidence              89999985  229999999998877653211 12244789999999999999875433   56666666666666665


Q ss_pred             hC----CCcc-ccCCCcEEEEEeCCC--------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        401 QI----GFPV-EHTPSHIIPIKIGNP--------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       401 ~~----g~~~-~~~~~~~~~i~l~~~--------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      +.    ++.. ..+.+.++.+.+++.              ....++.+.|+ ++||.+.++..       ..+|+  +..
T Consensus       340 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~-------~~~~~--~~~  409 (429)
T 4e77_A          340 HAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLML-EEGVYLAPSAF-------EAGFM--SLA  409 (429)
T ss_dssp             HHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHH-HTTEECCSSTT-------SCEEC--CTT
T ss_pred             HHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHH-HCCeEEeecCC-------CCEEE--ecc
Confidence            53    4332 234567888887653              12367888896 88999986532       23454  456


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~  480 (514)
                      +|++++++++++|++++++
T Consensus       410 ~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          410 HSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            8999999999999998764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.95  E-value=5.3e-26  Score=232.99  Aligned_cols=317  Identities=16%  Similarity=0.135  Sum_probs=218.8

Q ss_pred             cCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceE
Q psy16848         25 SVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHY  104 (514)
Q Consensus        25 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v  104 (514)
                      ..+|...+.+.+++.+.++.+....+...+.....+..+++++++++++|.+++++++||++|+..++.++..  +||.|
T Consensus        27 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~--~gd~V  104 (404)
T 1e5e_A           27 PPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK--AGDHL  104 (404)
T ss_dssp             CCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEE
T ss_pred             CCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhC--CCCEE
Confidence            3455556666666666665443222222222223466789999999999999899999999999999988866  99999


Q ss_pred             EecCccchhhhh----hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceE
Q psy16848        105 ISDAGNHASMIQ----GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT  180 (514)
Q Consensus       105 ~~~~~~h~~~~~----~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (514)
                      +++.+.|.+...    .++..                                                           
T Consensus       105 l~~~~~y~~~~~~~~~~~~~~-----------------------------------------------------------  125 (404)
T 1e5e_A          105 ISDECLYGCTHALFEHALTKF-----------------------------------------------------------  125 (404)
T ss_dssp             EEESCCCHHHHHHHHTHHHHT-----------------------------------------------------------
T ss_pred             EEeCCCchhHHHHHHHHHHHc-----------------------------------------------------------
Confidence            999999998775    33333                                                           


Q ss_pred             EeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCc
Q psy16848        181 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP  260 (514)
Q Consensus       181 ~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~  260 (514)
                                                                           |++++.++.+|.+.+++.++    +++
T Consensus       126 -----------------------------------------------------g~~~~~v~~~d~~~l~~~i~----~~t  148 (404)
T 1e5e_A          126 -----------------------------------------------------GIQVDFINTAIPGEVKKHMK----PNT  148 (404)
T ss_dssp             -----------------------------------------------------TCEEEEECTTSTTHHHHHCC----TTE
T ss_pred             -----------------------------------------------------CCEEEEECCCCHHHHHHhcC----CCC
Confidence                                                                 44455555445555555553    358


Q ss_pred             eEEEEecCCCCCccccCHHHHHHHHHH-cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----C
Q psy16848        261 KLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----G  335 (514)
Q Consensus       261 ~~vv~~~~~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----G  335 (514)
                      ++|++++|+||+|.++++++|.++|++ +|+++|+|++|+.+....      +.   ..++|+++.|+||+++++    |
T Consensus       149 ~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~------~~---~~~~di~~~S~sK~~~~~g~ri~  219 (404)
T 1e5e_A          149 KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN------PV---DFGVDVVVHSATKYINGHTDVVA  219 (404)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG---GGTCSEEEEETTTTTTCSSCCCC
T ss_pred             cEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCC------cc---ccCCEEEEEcCccccCCCCCCeE
Confidence            999999999999999999999999999 999999999999654321      11   236899999999999764    4


Q ss_pred             eEEEecHHHHH-HHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-C---------
Q psy16848        336 GYIVGTKNFID-TIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-F---------  404 (514)
Q Consensus       336 G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~---------  404 (514)
                      |++++++++++ .+......+ ++...++..+.++..+++..     +...++..++.+.+.+.|++.. +         
T Consensus       220 G~~~~~~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~  293 (404)
T 1e5e_A          220 GLICGKADLLQQIRMVGIKDI-TGSVISPHDAWLITRGLSTL-----NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFE  293 (404)
T ss_dssp             EEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCS
T ss_pred             EEEEECHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHhHhHH-----HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCC
Confidence            99999999888 777655433 12356777777777777532     2345555666666777776542 1         


Q ss_pred             -----cccc----CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccC---------CCCC------------CC--Cc
Q psy16848        405 -----PVEH----TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINY---------PTVP------------VG--EE  452 (514)
Q Consensus       405 -----~~~~----~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~---------~~~~------------~~--~~  452 (514)
                           .+..    ..++++.+.+++.  ..+..+ ++++.||.+...++         |..+            .+  ++
T Consensus       294 ~~p~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~-~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~  370 (404)
T 1e5e_A          294 DHEGHDIAKKQMRMYGSMITFILKSG--FEGAKK-LLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDG  370 (404)
T ss_dssp             SSTTHHHHHHHCSSCCSEEEEEETTH--HHHHHH-HHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTT
T ss_pred             CCccHHHHHhhCCCCceEEEEEeCCC--HHHHHH-HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCC
Confidence                 1111    1377888887642  233444 44688985443211         1100            12  57


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++|++++.    |+++++++.|+++++.+
T Consensus       371 ~iRis~g~----e~~~~li~~l~~al~~~  395 (404)
T 1e5e_A          371 MIRLSVGI----EDADELIADFKQGLDAL  395 (404)
T ss_dssp             EEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence            99999994    88999999998887653

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.95  E-value=2.2e-26  Score=237.55  Aligned_cols=341  Identities=21%  Similarity=0.201  Sum_probs=230.6

Q ss_pred             cCCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~   88 (514)
                      .+|+.++||.++   .+++  ||++.+++.+++++ +..+      .+..+...++++++++++ +.+++++++||++|+
T Consensus        49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~  121 (424)
T 2e7u_A           49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER-GLTF------GAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEAT  121 (424)
T ss_dssp             TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHH
T ss_pred             CCCCEEEEccccccccccCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence            367888999765   4554  78999999999987 3221      124577899999999999 677788899999999


Q ss_pred             ccchhh---ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         89 DSTLFT---LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        89 ~~~l~~---l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      ..++..   +..  +++.|+.++.+|.....++...+.....+..                 |.                
T Consensus       122 ~~al~~ar~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-----------------p~----------------  166 (424)
T 2e7u_A          122 MSALRLARGYTG--RPYIVKFRGNYHGHADGLLVEAGSGALTLGV-----------------PS----------------  166 (424)
T ss_dssp             HHHHHHHHHHHC--CCEEEEETTCCCCCCGGGSEECCSSSCCBCE-----------------ES----------------
T ss_pred             HHHHHHHHHhhC--CCEEEEECCCcCCCcHHHHHhcCCcccccCC-----------------CC----------------
Confidence            998875   332  5555555555555444344333321110000                 00                


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~  245 (514)
                                                   ..|+                               ....+.+++.++.+|+
T Consensus       167 -----------------------------~~g~-------------------------------~~~~~~~~~~~~~~d~  186 (424)
T 2e7u_A          167 -----------------------------SAGV-------------------------------PEEYAKLTLVLEYNDP  186 (424)
T ss_dssp             -----------------------------STTC-------------------------------CHHHHTTEEEECTTCH
T ss_pred             -----------------------------CCCC-------------------------------CCccCCceEeCCCCCH
Confidence                                         0000                               0000123556666788


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      +.+++.+++.. +++++|++++.++++|.+.+    +++|+++ ++||+++|+||+|+....|..  ...+..+.  .+|
T Consensus       187 ~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~--~~~~~~~~--~~d  260 (424)
T 2e7u_A          187 EGLREVLKRRG-EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFG--GATELLGL--KPD  260 (424)
T ss_dssp             HHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTT--HHHHHHTC--CCS
T ss_pred             HHHHHHHHhCC-CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchh--HHHHHhCC--Ccc
Confidence            88888887531 34788888888878998887    9999999 999999999999992122221  11122333  578


Q ss_pred             EEEcCCcccccC--CCeEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGN--IGGYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       322 i~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      ++  ||||++++  +.|++++++++++.+...... ...+.+.+++.++++.++++.+.+  .++..++++++.+++.+.
T Consensus       261 i~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~  336 (424)
T 2e7u_A          261 LV--TLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAG  336 (424)
T ss_dssp             EE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHH
T ss_pred             hh--hhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Confidence            77  99999986  239999999988877652211 112447889999999999987754  134778888888888888


Q ss_pred             HHhC----CCc-cccCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC
Q psy16848        399 LIQI----GFP-VEHTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP  460 (514)
Q Consensus       399 L~~~----g~~-~~~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~  460 (514)
                      |+++    ++. ...+.+.++++.+++.             ....++.+.|+ ++||.+.++..       ..+|++  .
T Consensus       337 L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~~--~  406 (424)
T 2e7u_A          337 LKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF-------EAAFLS--V  406 (424)
T ss_dssp             HHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS-------SCEECC--T
T ss_pred             HHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC-------CceEee--c
Confidence            8764    543 2345677888888641             23567888896 89999986542       235544  5


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAV  477 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~  477 (514)
                      .++++++++++++|+++
T Consensus       407 ~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          407 AHREEDVEKTLEALRKA  423 (424)
T ss_dssp             TCCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            68999999999999875

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.95  E-value=1.5e-26  Score=241.67  Aligned_cols=325  Identities=17%  Similarity=0.152  Sum_probs=229.7

Q ss_pred             ChhHHHHHHHHHHHhCCCCC-CcC-cccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccc-cCCCceEE
Q psy16848         31 PKGGRKCLGEALEKFGTGAG-GTR-NISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGK-MIPGLHYI  105 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~-~~~gd~v~  105 (514)
                      ++.+.+++.+++..++.... ++. ...+..+..+++++++++++|.+  ..++++|+|+++..++.++.+ ..++++|+
T Consensus        80 p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl  159 (465)
T 3e9k_A           80 PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKIL  159 (465)
T ss_dssp             ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEE
T ss_pred             hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEE
Confidence            45687888887776542211 111 11133466688999999999865  456566667777778888765 12355699


Q ss_pred             ecCccchhhhh----hhhcCCCCeee----c-cCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848        106 SDAGNHASMIQ----GIRNSSAPKII----Y-RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH  176 (514)
Q Consensus       106 ~~~~~h~~~~~----~~~~~~~~~~~----~-~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (514)
                      ++.+.|++...    .++..|.++..    + +.+                                             
T Consensus       160 ~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~---------------------------------------------  194 (465)
T 3e9k_A          160 LEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE---------------------------------------------  194 (465)
T ss_dssp             EETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCT---------------------------------------------
T ss_pred             EcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCC---------------------------------------------
Confidence            99999998655    34445655421    1 100                                             


Q ss_pred             CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848        177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD  256 (514)
Q Consensus       177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~  256 (514)
                                        +.+                                            .-|.+.+++.+++. 
T Consensus       195 ------------------~~~--------------------------------------------~~d~~~l~~~i~~~-  211 (465)
T 3e9k_A          195 ------------------GEE--------------------------------------------TLRIEDILEVIEKE-  211 (465)
T ss_dssp             ------------------TCS--------------------------------------------SCCHHHHHHHHHHH-
T ss_pred             ------------------CCC--------------------------------------------ccCHHHHHHHHHhc-
Confidence                              000                                            01556666666543 


Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc--cCC
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF--GNI  334 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l--g~~  334 (514)
                      ++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.|..        +......++|++++|+||++  |+.
T Consensus       212 ~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~--------~~~~~~~~~D~~~~s~~K~l~~gp~  283 (465)
T 3e9k_A          212 GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV--------ELYLHDWGVDFACWCSYKYLNAGAG  283 (465)
T ss_dssp             GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS--------CCCHHHHTCCEEEECSSSTTCCCTT
T ss_pred             CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc--------CCchhhcCCCEEEECcccccccCCC
Confidence            13589999999999999999999999999999999999999996653        11111347899999999999  444


Q ss_pred             C-eEEEecHHHHHHHHhhcCceE-------------e----------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        335 G-GYIVGTKNFIDTIRSYAAGFI-------------F----------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       335 G-G~l~~~~~~~~~l~~~~~~~~-------------~----------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                      | |++++++++++.+.....++.             +          ..+.+...++++.++++.+...++++++++.++
T Consensus       284 ~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~  363 (465)
T 3e9k_A          284 GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVL  363 (465)
T ss_dssp             CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            4 889988888765543222110             0          114567778888889988766668899999999


Q ss_pred             HHHHHHHHHHh-----------CCCccccCC-----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848        391 IVAYLRNELIQ-----------IGFPVEHTP-----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI  454 (514)
Q Consensus       391 ~~~~l~~~L~~-----------~g~~~~~~~-----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i  454 (514)
                      +.+++.+.|++           .++.+..+.     ++++++.++.  +..++.+.|. ++||.+..       ..++++
T Consensus       364 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--~~~~l~~~L~-~~Gi~v~~-------~~~~~i  433 (465)
T 3e9k_A          364 LTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV--PNKDVFQELE-KRGVVCDK-------RNPNGI  433 (465)
T ss_dssp             HHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC--TTCCHHHHHH-TTTEECEE-------ETTTEE
T ss_pred             HHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC--CHHHHHHHHH-HCCEEEec-------CCCCEE
Confidence            99999999988           567666553     6688888762  3567888895 89999862       224699


Q ss_pred             EEEe-CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        455 RLAP-TPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       455 Rl~~-~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      |+++ +..+|++|++++++.|++++++.
T Consensus       434 Ris~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          434 RVAPVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             EEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             EEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence            9998 78999999999999999988754

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.95  E-value=2.8e-26  Score=233.06  Aligned_cols=221  Identities=15%  Similarity=0.212  Sum_probs=164.1

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      |.+.+++.+++   .++++|++++++||||.+.|+++|.++|++|  |+++|+|++|+++..     ++ +..  ..++|
T Consensus       125 d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-----~~-~~~--~~~~d  193 (385)
T 2bkw_A          125 PLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-----EF-EFD--EWGVD  193 (385)
T ss_dssp             CHHHHHHHHHH---SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-----CC-CTT--TTTCS
T ss_pred             CHHHHHHHHhc---CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-----cc-ccc--ccCce
Confidence            55666666654   2478999999999999999999999999999  999999999986542     11 111  23679


Q ss_pred             EEEcCCccccc-CCC-eEEEecHHHHH-HHHh----------------------hcCc-eEeccCCcHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFG-NIG-GYIVGTKNFID-TIRS----------------------YAAG-FIFTTSLPPTVLAGAREAIRI  375 (514)
Q Consensus       322 i~~~S~sK~lg-~~G-G~l~~~~~~~~-~l~~----------------------~~~~-~~~~~~~~~~~~~a~~~~l~~  375 (514)
                      ++++|+||+++ +.| |++++++++++ .+..                      ...+ ..+..+.+...+.++.++++.
T Consensus       194 ~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  273 (385)
T 2bkw_A          194 FALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE  273 (385)
T ss_dssp             EEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred             EEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            99999999775 567 99999988776 4421                      1110 000124667777778888887


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHH-HhCCCccccC------CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC
Q psy16848        376 LSSQEGVELRAKHQDIVAYLRNEL-IQIGFPVEHT------PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP  448 (514)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~------~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~  448 (514)
                      +.+.++++++++++++++++.+.| +++++.+..+      .++++++.+++   ..++.+.|. ++||.+.++..+.  
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~gi~v~~g~~~~--  347 (385)
T 2bkw_A          274 ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---PPDVIAFLK-SHGVVIAGGIHKD--  347 (385)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---HHHHHHHHH-HTTEECBCCCCTT--
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC---HHHHHHHHH-HCCeEEeCCCCcc--
Confidence            654557788999999999999999 8777776532      35678888764   678889995 8999998876421  


Q ss_pred             CCCcEEEEE-eC---CCCCHHHHHHHHHHHHHHHHHc
Q psy16848        449 VGEEKIRLA-PT---PFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       449 ~~~~~iRl~-~~---~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ...+++|++ ++   ..++++|+++++++|+++++++
T Consensus       348 ~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          348 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            235799999 65   2468999999999999987543

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.95  E-value=1.1e-25  Score=232.35  Aligned_cols=287  Identities=17%  Similarity=0.139  Sum_probs=208.5

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.++.++++||++|+..++.++.+  +||+|+++.+.|.++...++.                  
T Consensus       113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~------------------  172 (445)
T 1qgn_A          113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIET------------------  172 (445)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHH------------------
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHH------------------
Confidence            577899999999999998899999999999999988866  999999999999887643210                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (445)
T 1qgn_A          173 --------------------------------------------------------------------------------  172 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCc-eEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP-KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~-~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                .+...|.++++++.+|.+.+++.+++    ++ ++|++++++||+|.+.|+++|.++|+++|+++|+|++
T Consensus       173 ----------~~~~~G~~v~~v~~~d~~~l~~ai~~----~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a  238 (445)
T 1qgn_A          173 ----------ILPKMGITATVIDPADVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGT  238 (445)
T ss_dssp             ----------TGGGGTCEEEEECSSCHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             ----------HHHHcCCEEEEeCCCCHHHHHHHhcc----CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence                      11223455556665566666666653    36 8999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      |+.+...       ..  ...++|++++|+||++|+.    +|++++++++++.+......+  +...++..+..+...+
T Consensus       239 ~~~~~~~-------~~--~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~--g~~~~~~~a~~~~~~l  307 (445)
T 1qgn_A          239 FATPLNQ-------KA--LALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHIL--GGALNPNAAYLIIRGM  307 (445)
T ss_dssp             TTCTTTC-------CT--TTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHG
T ss_pred             CcccccC-------Cc--cccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhH
Confidence            9855421       11  1347899999999999874    599999999888886544333  3345666655554444


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CC-cccc-----------------CCCcEEEEEeCCC-ccHHHHHHHHHH
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GF-PVEH-----------------TPSHIIPIKIGNP-ALNTKICDMLLK  433 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~-----------------~~~~~~~i~l~~~-~~~~~~~~~Ll~  433 (514)
                      +.     +....++..++.+++.+.|++. ++ .+..                 ..++++.+.++.. .....+.+.| +
T Consensus       308 ~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l-~  381 (445)
T 1qgn_A          308 KT-----LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDAL-K  381 (445)
T ss_dssp             GG-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHC-S
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhC-C
Confidence            42     3345566677788888888886 33 2211                 1466889998753 2345566665 3


Q ss_pred             hCCeEEecccCCCC--------------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        434 EKGHYVQPINYPTV--------------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       434 ~~GI~v~~~~~~~~--------------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..++.++.|..|..                    ...++.||+|++    .||++.+++.|+++++.
T Consensus       382 ~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          382 IPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             SSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             CceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence            45777666654321                    112579999998    46799999999988864

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.95  E-value=4.5e-26  Score=237.20  Aligned_cols=338  Identities=19%  Similarity=0.163  Sum_probs=221.7

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~~   89 (514)
                      +|+.++||.++   .+++  +|++.+++.+++++ +..+      .+..++.+++++++++++ +.+++++++||++|+.
T Consensus        55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~  127 (453)
T 2cy8_A           55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH-GVQY------AASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTL  127 (453)
T ss_dssp             TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTT-TCSS------CSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHH
T ss_pred             CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHH
Confidence            67788999766   5554  78999999999976 3221      134578889999998888 5677888999999999


Q ss_pred             cchhh---ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         90 STLFT---LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        90 ~~l~~---l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      .++..   +..  +++.|+.++.+|.....++...+..   +..                 |..   .|.          
T Consensus       128 ~al~~ar~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~---~~~-----------------~~~---~g~----------  172 (453)
T 2cy8_A          128 LALRVARAFTG--RRMILRFEGHYHGWHDFSASGYNSH---FDG-----------------QPA---PGV----------  172 (453)
T ss_dssp             HHHHHHHHHHC--CCEEEEECC----------------------------------------------------------
T ss_pred             HHHHHHHHhhC--CCEEEEEcCCcCCCchhhHhhcCCc---cCC-----------------CcC---CCC----------
Confidence            99887   433  5555555544554433222222110   000                 000   000          


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                                                     -......+..++.+|++
T Consensus       173 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~  189 (453)
T 2cy8_A          173 ---------------------------------------------------------------LPETTANTLLIRPDDIE  189 (453)
T ss_dssp             ------------------------------------------------------------------CGGGEEEECTTCHH
T ss_pred             ---------------------------------------------------------------CccccCceeecCCCCHH
Confidence                                                                           00001134455566888


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCce
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~d  321 (514)
                      .+++.+++.. +++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ |+ .|..  ...+..+.  .+|
T Consensus       190 ~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~--~~~~~~~~--~~d  263 (453)
T 2cy8_A          190 GMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNH--GMQALLDV--QPD  263 (453)
T ss_dssp             HHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTT--HHHHHHTC--CCS
T ss_pred             HHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCch--hhhHHhCC--CCc
Confidence            8888887532 35789999998889998877    9999999999999999999999 33 2211  11122232  578


Q ss_pred             EEEcCCcccccC--CCeEEEecHHHHHHHHhh--c-CceEeccCCcHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGN--IGGYIVGTKNFIDTIRSY--A-AGFIFTTSLPPTVLAGAREAIRI-LSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       322 i~~~S~sK~lg~--~GG~l~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l  395 (514)
                      ++  |+||++++  ++|++++++++++.+...  . .....+.+.+++.++++.++++. + .+.   ..++++++++++
T Consensus       264 i~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~---~~~~~~~~~~~l  337 (453)
T 2cy8_A          264 LT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDD---VCAKINDLGQFA  337 (453)
T ss_dssp             EE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTT---HHHHHHHHHHHH
T ss_pred             EE--EEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhh---HHHHHHHHHHHH
Confidence            77  89999986  239999999888776541  1 11112447889999999999987 6 333   667778888888


Q ss_pred             HHHHHhC----CCcc-ccCCCcEEEEEeCC-----C--------------ccHHHHHHHHHHhCCeEEecccCCCCCCCC
Q psy16848        396 RNELIQI----GFPV-EHTPSHIIPIKIGN-----P--------------ALNTKICDMLLKEKGHYVQPINYPTVPVGE  451 (514)
Q Consensus       396 ~~~L~~~----g~~~-~~~~~~~~~i~l~~-----~--------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~  451 (514)
                      .+.|+++    ++.. ..+.+.++++.++.     .              ....++.+.|+ ++||.+.++        .
T Consensus       338 ~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~--------~  408 (453)
T 2cy8_A          338 REAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGGR--------G  408 (453)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBTT--------T
T ss_pred             HHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeEEeCC--------C
Confidence            8777654    4332 45677788888874     1              12567888996 899998531        1


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                       .+|+  +..++++++++++++|+++++++.
T Consensus       409 -~~~l--~~~~t~~~i~~~l~~l~~~l~~~~  436 (453)
T 2cy8_A          409 -SVFL--SAQHEREHVEHLVTTFDRVLDRLA  436 (453)
T ss_dssp             -EEEC--CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -CEEe--eccCCHHHHHHHHHHHHHHHHHHH
Confidence             3555  467899999999999999987753

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.95  E-value=1.8e-26  Score=244.64  Aligned_cols=339  Identities=11%  Similarity=-0.056  Sum_probs=227.4

Q ss_pred             eeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-------CcEEEEeccccccccc
Q psy16848         20 TCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-------EAGLVFTSCYVANDST   91 (514)
Q Consensus        20 ~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~i~~~sGt~a~~~~   91 (514)
                      ++|++.+.+. .+|++.+++.+++....  +.  ....|..++.+++++.+.+.++.       ++.+++++||+|+..+
T Consensus       105 ~i~l~~g~~~~~~~~~v~a~~~~~~~~~--y~--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~  180 (533)
T 3f6t_A          105 AVNYCHTELGLNRDKVVAEWVNGAVANN--YP--VPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYA  180 (533)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHTCS--CC--SSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHH
T ss_pred             heeccCCCCCcCCcHHHHHHHHHHHhCC--CC--CCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHH
Confidence            4666554444 35778888877776422  11  12235566777777777655232       3556667778888888


Q ss_pred             hhh-----ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         92 LFT-----LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        92 l~~-----l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      +.+     +..  +||+|+++.++|.+....++..|..++.++....+                                
T Consensus       181 ~~~l~~~~l~~--~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~--------------------------------  226 (533)
T 3f6t_A          181 FHSLAENHLLK--KGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYE--------------------------------  226 (533)
T ss_dssp             HHHHHHTTSSC--TTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEET--------------------------------
T ss_pred             HHHhhhhhccC--CcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCc--------------------------------
Confidence            876     544  99999999999999998888877776655431000                                


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                ..+.+                                             -|.+
T Consensus       227 --------------------------~~~~~---------------------------------------------~d~~  235 (533)
T 3f6t_A          227 --------------------------KNDWE---------------------------------------------IEPN  235 (533)
T ss_dssp             --------------------------TTTSE---------------------------------------------ECHH
T ss_pred             --------------------------ccCCC---------------------------------------------CCHH
Confidence                                      00000                                             0334


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccCH---HHHHHHHH-HcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICPL---KELCEVSH-QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l---~~l~~l~~-~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      .+++.+    ++++++|++++|+||||.+++.   ++|.++|+ +||+++|+||+|+....+  +.++..   ...+.++
T Consensus       236 ~l~~~l----~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~---~~~~~~i  306 (533)
T 3f6t_A          236 EIEKLK----DPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYS---VVPYNTM  306 (533)
T ss_dssp             HHHHHS----CTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHH---HSGGGEE
T ss_pred             HHHHHh----CCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhh---cCCCCEE
Confidence            444433    4568999999999999999994   58888898 589999999999833321  111211   1236789


Q ss_pred             EEcCCcccccCCC---eEEEecHH-----HHHHH--------------------------------HhhcCceEeccCCc
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKN-----FIDTI--------------------------------RSYAAGFIFTTSLP  362 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~-----~~~~l--------------------------------~~~~~~~~~~~~~~  362 (514)
                      +++||||.+|.+|   ||++++++     +++.+                                .......  +.+.+
T Consensus       307 ~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~--~~~~~  384 (533)
T 3f6t_A          307 LVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYH--TAGLS  384 (533)
T ss_dssp             EEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGG--GCSCC
T ss_pred             EEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhc--ccCCC
Confidence            9999999999778   99998766     33322                                1222222  33456


Q ss_pred             HHHHHH----HHHHHH-----HhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-EEEEEeCC------------
Q psy16848        363 PTVLAG----AREAIR-----ILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGN------------  420 (514)
Q Consensus       363 ~~~~~a----~~~~l~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~------------  420 (514)
                      .+.+.+    +..++.     .....++++++++++++++++.+.|. .++.+..+.++ ++++.++.            
T Consensus       385 ~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~  463 (533)
T 3f6t_A          385 TPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRD  463 (533)
T ss_dssp             HHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHH
Confidence            655555    334442     11235677889999999999999997 77766556555 45555542            


Q ss_pred             ----CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        421 ----PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       421 ----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                          ..+..+++..+++++||.+.|+..|..+  .+++|++++ ..+++++++++++|+++++++.
T Consensus       464 ~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~--~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~  526 (533)
T 3f6t_A          464 YLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK--PGELRVSQA-NLPTEDYALIGKQVLELLKEYY  526 (533)
T ss_dssp             HHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS--TTEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCHHHHHHHHHHhCCEEEeCCcccCCC--CCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHH
Confidence                0234577777767889999999876653  579999996 4689999999999999988753

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.95  E-value=3.2e-26  Score=228.62  Aligned_cols=305  Identities=13%  Similarity=0.037  Sum_probs=222.9

Q ss_pred             eeeecccCCC-C-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---C--CcEEEEeccccccccc
Q psy16848         19 VTCRLSSVQY-K-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---K--EAGLVFTSCYVANDST   91 (514)
Q Consensus        19 ~~~d~~~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~--~~~i~~~sGt~a~~~~   91 (514)
                      .++||+++.. + .+|++.+++.+++...+.  .  .  ++.. ...++++.++++++   .  +..+++++|++++..+
T Consensus        20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~--~--~--y~~~-~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~   92 (335)
T 1uu1_A           20 DKTYLALNENPFPFPEDLVDEVFRRLNSDAL--R--I--YYDS-PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM   92 (335)
T ss_dssp             CSEEESSCCCSSCCCHHHHHHHHHTCCGGGG--G--S--CCCS-SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHH
T ss_pred             cceECCCCCCCCCCCHHHHHHHHHHhhhhhh--h--c--CCCC-chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHH
Confidence            5788876655 3 478899988887632111  1  1  1111 25788999999988   3  3455556667777777


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++     ||.|+++ +.|.+....++..|.+++.++.++ +                                     
T Consensus        93 ~~~~-----gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~-~-------------------------------------  128 (335)
T 1uu1_A           93 MLMF-----DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTK-D-------------------------------------  128 (335)
T ss_dssp             HHHS-----SEEEECS-SSCHHHHHHHHHHTCEEEECCCCT-T-------------------------------------
T ss_pred             HHHh-----CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCC-C-------------------------------------
Confidence            7665     7999999 999998887777777766554310 0                                     


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                              .+                                             .|.+.+   
T Consensus       129 ------------------------~~---------------------------------------------~d~~~l---  136 (335)
T 1uu1_A          129 ------------------------LR---------------------------------------------IPEVNV---  136 (335)
T ss_dssp             ------------------------SC---------------------------------------------CCCCCC---
T ss_pred             ------------------------CC---------------------------------------------CCHHHc---
Confidence                                    00                                             011111   


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                            ++++++++++|+||||.++|.+++.++++.+| ++|+||+|+.+..+    ++....+ ..+.+++++|+||++
T Consensus       137 ------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~----~~~~~~~-~~~~~i~~~s~sK~~  204 (335)
T 1uu1_A          137 ------GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE----SYVDFLK-KYENLAVIRTFSKAF  204 (335)
T ss_dssp             ------CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC----CCGGGGG-TCSSEEEEEESTTTT
T ss_pred             ------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch----hHHHHhh-hCCCEEEEecchhhc
Confidence                  35789999999999999999999999999889 99999999943211    1222111 235789999999999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH  408 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  408 (514)
                      |.+|   ||+++++++++.+......+    +.++..+.++.++++.  .+++++.+++++++++++.+.|++.|+.+.+
T Consensus       205 g~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  278 (335)
T 1uu1_A          205 SLAAQRVGYVVASEKFIDAYNRVRLPF----NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITD  278 (335)
T ss_dssp             TCGGGCCEEEEECHHHHHHHHHHSCTT----CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred             CCcccCeEEEEeCHHHHHHHHHhcCCC----CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcC
Confidence            8657   99999999998887765433    6788888888888874  2456778889999999999999887776656


Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        409 TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       409 ~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.+.++++.++. .+..++.+.|. ++||.+.+        ..+++|++++   +++|+++++++|+++
T Consensus       279 ~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~--------~~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          279 SRGNFVFVFMEK-EEKERLLEHLR-TKNVAVRS--------FREGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             CCSSEEEEECCT-HHHHHHHHHHH-HHTEEEEE--------ETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             CCCeEEEEECCC-CCHHHHHHHHH-HCCEEEEE--------CCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            667788888875 45678889996 88999986        2458999997   578899999998753

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.90  E-value=2.7e-29  Score=256.56  Aligned_cols=342  Identities=12%  Similarity=0.120  Sum_probs=232.4

Q ss_pred             eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEEEeccccccccch
Q psy16848         19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~~~sGt~a~~~~l   92 (514)
                      .++||..+++  ..+|++.+++.+++......++     ....++.+++++++.+.+|    .+..+++++|++|+..++
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~  106 (392)
T 3b1d_A           32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYT-----YASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAI  106 (392)
Confidence            5566644433  2368899999988865211111     1123444444444444444    345666777788999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++..  +||.|+++.+.|.+....++..|.+++.++..+.+                    |.|               
T Consensus       107 ~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--------------------g~~---------------  149 (392)
T 3b1d_A          107 QAFTK--EGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEEN--------------------GLF---------------  149 (392)
Confidence            88865  99999999999999887777777766554331000                    000               


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                           ..|.+.+++.+
T Consensus       150 ---------------------------------------------------------------------~~d~~~l~~~l  160 (392)
T 3b1d_A          150 ---------------------------------------------------------------------QIDFEQLENDI  160 (392)
Confidence                                                                                 00333344444


Q ss_pred             hhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      ++   ++++++++++++||+|.+++   +++|.++|++||+++|+||+|+.+.. +....++........+.+++++|+|
T Consensus       161 ~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s  237 (392)
T 3b1d_A          161 VE---NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSAT  237 (392)
Confidence            31   34778889999999999988   89999999999999999999995433 2221122111110035678899999


Q ss_pred             ccccCCC---eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-
Q psy16848        329 KAFGNIG---GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I-  402 (514)
Q Consensus       329 K~lg~~G---G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-  402 (514)
                      |.+|.+|   ||+++++ ++++.+......+.+ .+.+++.++++.++++.. ..++++.+++++++++++.+.|++ + 
T Consensus       238 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~  315 (392)
T 3b1d_A          238 KTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNH-HEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAP  315 (392)
Confidence            9998556   9988865 588888765544421 145777788888888743 356677888899999999999987 4 


Q ss_pred             CCccccCCCcEE-EEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTPSHII-PIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       403 g~~~~~~~~~~~-~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      ++.+..+.++++ ++.++. ..+..++.+.|++++||.+.++..+. +.+++++|++++.  +++++++++++|+++++
T Consensus       316 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~~--~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          316 RLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG-SEGELHARLNIAA--PKSLVEEICKRIVCCLP  391 (392)
Confidence            777766776655 467664 23466788888547899999987644 3356799999883  67899999999988764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.94  E-value=3.3e-26  Score=235.12  Aligned_cols=335  Identities=13%  Similarity=0.031  Sum_probs=223.6

Q ss_pred             CCceeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-C-------CCcEEE
Q psy16848         16 SNRVTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-Q-------KEAGLV   80 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-------~~~~i~   80 (514)
                      +|..++||..+.|++       +|.+.+++.++++..+. ...+    +......++++.+++++ +       .++.++
T Consensus        28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~  102 (412)
T 1ajs_A           28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEY----LPILGLAEFRTCASRLALGDDSPALQEKRVGG  102 (412)
T ss_dssp             CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCC----CCCCCCHHHHHHHHHHHhcCCCCccCCCcEEE
Confidence            466789998887642       36788888777632111 1111    11222356666666666 3       256777


Q ss_pred             --EeccccccccchhhccccCCC-----ceEEecCccchhhhhhhhcCCCC-eeeccCCChHHHHHHHHhcccCCCcEEE
Q psy16848         81 --FTSCYVANDSTLFTLGKMIPG-----LHYISDAGNHASMIQGIRNSSAP-KIIYRHNDVNHLTQVLENMDVKIPKLVA  152 (514)
Q Consensus        81 --~~sGt~a~~~~l~~l~~~~~g-----d~v~~~~~~h~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~  152 (514)
                        ++||++|+..++..+....+|     |.|+++.++|.+....++..|.+ ++.++....                   
T Consensus       103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-------------------  163 (412)
T 1ajs_A          103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT-------------------  163 (412)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET-------------------
T ss_pred             EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC-------------------
Confidence              888899988885432212389     99999999999998888888887 765543100                   


Q ss_pred             eeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhh
Q psy16848        153 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRN  232 (514)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~  232 (514)
                                                               .+.                                    
T Consensus       164 -----------------------------------------~~~------------------------------------  166 (412)
T 1ajs_A          164 -----------------------------------------EKR------------------------------------  166 (412)
T ss_dssp             -----------------------------------------TTT------------------------------------
T ss_pred             -----------------------------------------CCC------------------------------------
Confidence                                                     000                                    


Q ss_pred             CCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccc-ccccC--CC
Q psy16848        233 SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHA-VGLYG--EH  306 (514)
Q Consensus       233 ~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~-~g~~g--~~  306 (514)
                               ..|.+.+++.+.+. ..+++++++++++||||.+++   +++|.++|++||+++|+||+|. ++..+  ..
T Consensus       167 ---------~~d~~~l~~~l~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~  236 (412)
T 1ajs_A          167 ---------GLDLQGFLSDLENA-PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKD  236 (412)
T ss_dssp             ---------EECHHHHHHHHHHS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHH
T ss_pred             ---------ccCHHHHHHHHHhC-CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCccccc
Confidence                     00455566666543 234788889999999999988   6789999999999999999998 33321  01


Q ss_pred             CCCccccCCCccCceEEEcCCcccccCCC---eEEEe---cHH----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh
Q psy16848        307 GAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVG---TKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL  376 (514)
Q Consensus       307 ~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~  376 (514)
                      ..++..... ..+.++++.|+||.+|+.|   ||+++   +++    +++.+.......  ....+++.+.++.++|+..
T Consensus       237 ~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~  313 (412)
T 1ajs_A          237 AWAIRYFVS-EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVT--WSNPPAQGARIVARTLSDP  313 (412)
T ss_dssp             THHHHHHHH-TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCSHHHHHHHHHHHSH
T ss_pred             chHHHHHhc-cCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcc--cCCCChHHHHHHHHHHcCc
Confidence            111111111 1245699999999999877   99998   777    444444321111  1134777788888888743


Q ss_pred             h-----hchHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC
Q psy16848        377 S-----SQEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT  446 (514)
Q Consensus       377 ~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~  446 (514)
                      .     ..++++.+++++++++++.+.|++++    +.+..+.++ ++++.++     .++...+++++||.+.+     
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~-----  383 (412)
T 1ajs_A          314 ELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----PKQVEYLINQKHIYLLP-----  383 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----HHHHHHHHHTTCEECCT-----
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----HHHHHHHHHhCCEEecC-----
Confidence            2     34667889999999999999999886    666555554 4443332     34455554689999874     


Q ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        447 VPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       447 ~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                            .+|++++. .+++++++++++|+++++++
T Consensus       384 ------~~Ris~~~-~~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          384 ------SGRINMCG-LTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             ------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred             ------CcEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence                  26999983 58999999999999998764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.94  E-value=5.6e-26  Score=233.65  Aligned_cols=336  Identities=16%  Similarity=0.183  Sum_probs=219.4

Q ss_pred             eecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcE-EEEeccccccccchhhc
Q psy16848         21 CRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAG-LVFTSCYVANDSTLFTL   95 (514)
Q Consensus        21 ~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~-i~~~sGt~a~~~~l~~l   95 (514)
                      ..+.+.+| .+|++.+++.+++. .++.+++++.+..+.   ....+.+++++++++|.+.. ++++||++|+..++.++
T Consensus        34 ~~~~~~n~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~  112 (420)
T 3gbx_A           34 ELIASENY-TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL  112 (420)
T ss_dssp             ECCTTCCC-CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH
T ss_pred             eeeccCCC-CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHh
Confidence            34456666 58999999999884 443333333222221   23344555789999998765 55799999999998888


Q ss_pred             cccCCCceEEecCccchhhhh-hh--hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         96 GKMIPGLHYISDAGNHASMIQ-GI--RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        96 ~~~~~gd~v~~~~~~h~~~~~-~~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .+  +||.|+++.++|.+... +.  ...+..+                                               
T Consensus       113 ~~--~gd~v~~~~~~~~~~~~~~~~~~~~g~~~-----------------------------------------------  143 (420)
T 3gbx_A          113 LQ--PGDTVLGMNLAQGGHLTHGSPVNFSGKLY-----------------------------------------------  143 (420)
T ss_dssp             CC--TTCEEEEEEEC------------CHHHHS-----------------------------------------------
T ss_pred             cC--CCCEEEecchhhcceeccchhhhhcccce-----------------------------------------------
Confidence            66  99999999999987431 11  1111100                                               


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCChhH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HNDVNH  247 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d~~~  247 (514)
                                                                                     ..+.++     ..|.+.
T Consensus       144 ---------------------------------------------------------------~~~~~~~~~~~~~d~~~  160 (420)
T 3gbx_A          144 ---------------------------------------------------------------NIVPYGIDESGKIDYDE  160 (420)
T ss_dssp             ---------------------------------------------------------------EEEEEEECTTCSCCHHH
T ss_pred             ---------------------------------------------------------------eEEeccCCccCCcCHHH
Confidence                                                                           111111     136777


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +++.+++.   ++++|++++++|+  ...++++|.++|++||+++|+||+|+.+......     .......+|++++|+
T Consensus       161 l~~~i~~~---~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~-----~~~~~~~~di~~~s~  230 (420)
T 3gbx_A          161 MAKLAKEH---KPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGV-----YPNPVPHAHVVTTTT  230 (420)
T ss_dssp             HHHHHHHH---CCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTS-----SCCSTTTSSEEEEES
T ss_pred             HHHHHHhc---CCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceeccc-----CCcccccCCEEEeec
Confidence            77777653   3688999888775  4778999999999999999999999855542111     111112479999999


Q ss_pred             cccc-cCCCeEEEecH---HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        328 GKAF-GNIGGYIVGTK---NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       328 sK~l-g~~GG~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      ||++ |+.||++++++   ++.+.+.........+ +.+...++++..++.....++++++++++.++++++.+.|++.|
T Consensus       231 sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  309 (420)
T 3gbx_A          231 HKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQG-GPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRG  309 (420)
T ss_dssp             SGGGCSCSCEEEEESSCCHHHHHHHHHHHC----C-CCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCCC-CcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999 55679999987   7777776544333222 23344444444455544345667889999999999999999988


Q ss_pred             Ccccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEEEEeCCC----CCHHHHHHHHHH
Q psy16848        404 FPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIRLAPTPF----HTREMIDKFVTD  473 (514)
Q Consensus       404 ~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iRl~~~~~----~t~e~id~~~~~  473 (514)
                      +.+..  +.++++++.++. ..+...+.+.| +++||.+.+...+..   +.+...+|++++..    .+++++++++++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~  388 (420)
T 3gbx_A          310 YKVVSGGTENHLFLLDLVDKNLTGKEADAAL-GRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGW  388 (420)
T ss_dssp             CEEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred             CeeccCCCCCeEEEEEcCCCCCCHHHHHHHH-HHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHH
Confidence            87765  456677777654 23456677777 589999988433221   12345699998643    568999999999


Q ss_pred             HHHHHHHc
Q psy16848        474 LLAVWKSL  481 (514)
Q Consensus       474 l~~~l~~~  481 (514)
                      |++++++.
T Consensus       389 l~~~l~~~  396 (420)
T 3gbx_A          389 MCDVLDNI  396 (420)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhCc
Confidence            99998875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.90  E-value=3.2e-29  Score=259.32  Aligned_cols=327  Identities=18%  Similarity=0.142  Sum_probs=232.4

Q ss_pred             cCCceeeecccCCC---CC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCCcEEEEecccccc
Q psy16848         15 KSNRVTCRLSSVQY---KV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKEAGLVFTSCYVAN   88 (514)
Q Consensus        15 ~~g~~~~d~~~~~~---~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~i~~~sGt~a~   88 (514)
                      .+|+.|+||.++.+   ++  ||++++++.+++.+ +...      ....+...++++++++++ +.++++|++||++|+
T Consensus        97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~-~~~~------~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~  169 (465)
T 2yky_A           97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV-GLNL------STQTENEALFAEAVCDRFPSIDLVRFTNSGTEAN  169 (465)
Confidence            37788888877665   44  79999999999987 3221      123467789999999998 778899999999999


Q ss_pred             ccchhhccccCCCceEEe-cCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         89 DSTLFTLGKMIPGLHYIS-DAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~-~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +.+++.+....+++.|++ +..+|.....++  .|  +.                                         
T Consensus       170 ~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg--~~-----------------------------------------  204 (465)
T 2yky_A          170 LMALATATAITGRKTVLAFDGGYHGGLLNFA--SG--HA-----------------------------------------  204 (465)
Confidence            999976532224455555 555555554333  11  00                                         


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCC--CEEEecCCCh
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSA--PKIIYRHNDV  245 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~--~~~~v~~~d~  245 (514)
                                                                                      ..|.  .++.++++|.
T Consensus       205 ----------------------------------------------------------------~~g~~~~~~~~~~~d~  220 (465)
T 2yky_A          205 ----------------------------------------------------------------PTNAPYHVVLGVYNDV  220 (465)
Confidence                                                                            0000  2334455677


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      +.+++.+++. .+++++|+++++++++|.+.+    +++|+++|++||+++|+||+|+ +..|..+  ..+..+.  .+|
T Consensus       221 ~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~--a~~~~gv--~pD  294 (465)
T 2yky_A          221 EGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGG--AQEMLGI--SAD  294 (465)
Confidence            7777777653 246889999998888998777    8999999999999999999999 6544321  2233333  578


Q ss_pred             EEEcCCcccccCCC---eEEEecHHHHHHHHhh--cC-ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        322 IISGTLGKAFGNIG---GYIVGTKNFIDTIRSY--AA-GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       322 i~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~--~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                      ++  ||+|++|+ |   |++++++++++.+.+.  .. ....+++.+++.++++.++|+.+.++.   +.++++++.+++
T Consensus       295 i~--t~sK~lg~-G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~---~~~~~~~~~~~l  368 (465)
T 2yky_A          295 LT--TLGKYIGG-GMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQ---AASDLSASGDRF  368 (465)
Confidence            77  89999987 6   8999999999888761  11 122255789999999999999875443   778888888888


Q ss_pred             HHHHHhC--CCcc---ccCCCcEEEEEeCC-C------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        396 RNELIQI--GFPV---EHTPSHIIPIKIGN-P------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       396 ~~~L~~~--g~~~---~~~~~~~~~i~l~~-~------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      ++.|+++  +..+   +...|.++++.+.+ .            .....+.+.|+ ++||++.|+.+.       .    
T Consensus       369 ~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~~~-------~----  436 (465)
T 2yky_A          369 RANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRGMY-------A----  436 (465)
Confidence            8888775  2222   34567788877653 1            12456888886 899999876531       1    


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++..+|++|+++++++++++++++
T Consensus       437 ~s~~~t~edid~~l~~l~~~l~~~  460 (465)
T 2yky_A          437 LSLEIADAGRDAFAEALADFIGEQ  460 (465)
Confidence            444689999999999999988775

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.94  E-value=2.5e-26  Score=236.08  Aligned_cols=332  Identities=11%  Similarity=0.064  Sum_probs=221.6

Q ss_pred             CCceeeecccCCCCC-------ChhHHHHHHH-HHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-C-------CCcEE
Q psy16848         16 SNRVTCRLSSVQYKV-------PKGGRKCLGE-ALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-Q-------KEAGL   79 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~-------~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-------~~~~i   79 (514)
                      ++..++||..+.|++       +|.+.+++.+ ++.. +. ...+....|    ..++++.+++++ +       .+..+
T Consensus        27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-~~-~~~y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~i~  100 (412)
T 1yaa_A           27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SY-NHEYLGITG----LPSLTSNAAKIIFGTQSDALQEDRVI  100 (412)
T ss_dssp             CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-TC-CCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred             CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-cc-ccCCCCCCC----cHHHHHHHHHHHhcCCCCCCCcceEE
Confidence            456789999888743       3677777777 6542 11 111111223    345555555555 2       35567


Q ss_pred             E--Eeccccccccch--hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeec
Q psy16848         80 V--FTSCYVANDSTL--FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET  155 (514)
Q Consensus        80 ~--~~sGt~a~~~~l--~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~  155 (514)
                      +  +++|++|+..++  ..+..  +||.|+++.++|.+....++..|.+++.++..+.+                     
T Consensus       101 ~~~t~g~~~a~~~~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~---------------------  157 (412)
T 1yaa_A          101 SVQSLSGTGALHISAKFFSKFF--PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANE---------------------  157 (412)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHC--TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETT---------------------
T ss_pred             EEeccchHhHHHHHHHHHHHhC--CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCC---------------------
Confidence            6  777888887763  33333  99999999999999988888888877765430000                     


Q ss_pred             cccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCC
Q psy16848        156 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSA  235 (514)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~  235 (514)
                                                             +.                                       
T Consensus       158 ---------------------------------------~~---------------------------------------  159 (412)
T 1yaa_A          158 ---------------------------------------TK---------------------------------------  159 (412)
T ss_dssp             ---------------------------------------TT---------------------------------------
T ss_pred             ---------------------------------------CC---------------------------------------
Confidence                                                   00                                       


Q ss_pred             CEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---CCCC
Q psy16848        236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE---HGAG  309 (514)
Q Consensus       236 ~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~---~~~~  309 (514)
                            ..|.+.+++.+++. .++++++++++++||||.+++   +++|.++|++||+++|+||+|+....+.   .+.+
T Consensus       160 ------~~d~~~l~~~l~~~-~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  232 (412)
T 1yaa_A          160 ------SLDLNGFLNAIQKA-PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYA  232 (412)
T ss_dssp             ------EECHHHHHHHHHHS-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred             ------ccCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHH
Confidence                  01455555655542 122456777999999999998   6789999999999999999997333221   1111


Q ss_pred             ccccCCCccC---ceEEEcCCcccccCCC---eEEE--e-----cHH----HHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        310 IGERDGQLHN---MDIISGTLGKAFGNIG---GYIV--G-----TKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       310 ~~~~~~~~~~---~di~~~S~sK~lg~~G---G~l~--~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      +..... ...   .+++++|+||.+|+.|   ||++  +     +++    +++.+.......  ..+.+...+.++.++
T Consensus       233 ~~~~~~-~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~a~~~~  309 (412)
T 1yaa_A          233 VRLGVE-KLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSE--VSNPPAYGAKIVAKL  309 (412)
T ss_dssp             HHHHHH-HTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHH
T ss_pred             HHHHHh-cCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhc--cCCCChHHHHHHHHH
Confidence            211111 112   6799999999999877   9988  7     566    777766532221  224477888888888


Q ss_pred             HHHhh-----hchHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCcEEE-EEeCCCccHHHHHHHHHHhCCeEEecc
Q psy16848        373 IRILS-----SQEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSHIIP-IKIGNPALNTKICDMLLKEKGHYVQPI  442 (514)
Q Consensus       373 l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~-i~l~~~~~~~~~~~~Ll~~~GI~v~~~  442 (514)
                      ++...     ..++++.+++++++++++.+.|++.+    +.+..+.++++. +.+    +...+ ..+++++||.+.+ 
T Consensus       310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~~gi~v~~-  383 (412)
T 1yaa_A          310 LETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----TPQMV-KRLEETHAVYLVA-  383 (412)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC----CHHHH-HHHHHHHCEECCT-
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC----CHHHH-HHHHHhCCEEecc-
Confidence            87441     24677889999999999999999875    776666665443 322    23455 5554688999874 


Q ss_pred             cCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        443 NYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       443 ~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                                ++|++++. .+++++++++++|+++++.+
T Consensus       384 ----------~~Ris~~~-~~~~~i~~~~~~l~~~~~~~  411 (412)
T 1yaa_A          384 ----------SGRASIAG-LNQGNVEYVAKAIDEVVRFY  411 (412)
T ss_dssp             ----------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred             ----------CcEEEEcc-CCHhHHHHHHHHHHHHHHhh
Confidence                      47999983 58999999999999988753

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.94  E-value=1.2e-25  Score=237.72  Aligned_cols=332  Identities=14%  Similarity=0.092  Sum_probs=231.4

Q ss_pred             CChhHHHHHHHHHHHhCCCCC-CcCcccCcchHHHHHHHHHHhHcCCC----cE--EEEeccccccccchhhccccCCC-
Q psy16848         30 VPKGGRKCLGEALEKFGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKE----AG--LVFTSCYVANDSTLFTLGKMIPG-  101 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~----~~--i~~~sGt~a~~~~l~~l~~~~~g-  101 (514)
                      +++.+.+++.+++..+..... .+....+..++..++++++++++|.+    .+  ++++|||+|+..++.++..  +| 
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~--~g~  185 (514)
T 3mad_A          108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRD--WAR  185 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHH--HHH
T ss_pred             CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHH--Hhh
Confidence            357788888888876443222 11222233466677888889999876    45  8888899999999988865  54 


Q ss_pred             -------ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848        102 -------LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus       102 -------d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                             |.|+++.+.|.+...+++..|.+++.++.++ +                                        
T Consensus       186 ~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~-~----------------------------------------  224 (514)
T 3mad_A          186 ATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDA-D----------------------------------------  224 (514)
T ss_dssp             HHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCT-T----------------------------------------
T ss_pred             hhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCC-C----------------------------------------
Confidence                   9999999999999888877777766554320 0                                        


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                            +                                            .-|.+.+++.+  
T Consensus       225 ----------------------~--------------------------------------------~~d~~~Le~~i--  236 (514)
T 3mad_A          225 ----------------------Y--------------------------------------------RADVAAMREAI--  236 (514)
T ss_dssp             ----------------------S--------------------------------------------CBCHHHHHHHC--
T ss_pred             ----------------------C--------------------------------------------CCCHHHHHHHh--
Confidence                                  0                                            00444444444  


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc---CCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY---GEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~---g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                        ++++++|++++++||+|.+.++++|.++|++||+++|+|++|+.+..   +..+.+.........+.|++++|+||++
T Consensus       237 --~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l  314 (514)
T 3mad_A          237 --TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG  314 (514)
T ss_dssp             --CTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTT
T ss_pred             --ccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhcc
Confidence              34689999999999999999999999999999999999999984332   1122111122222346899999999995


Q ss_pred             -cCCC-eEEEecHHHHHHHHhhcC-c--------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        332 -GNIG-GYIVGTKNFIDTIRSYAA-G--------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       332 -g~~G-G~l~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                       ++.| |+++.+++.......... .        ..+..+.+.....++.+++..+...++++..++..++++++.+.|+
T Consensus       315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~  394 (514)
T 3mad_A          315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVR  394 (514)
T ss_dssp             CCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence             4444 888777665443221110 0        0011233444455666666666566778899999999999999999


Q ss_pred             hC-CCccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHH
Q psy16848        401 QI-GFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT-PFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       401 ~~-g~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~-~~~t~e~id~~~~~l~~~l  478 (514)
                      +. ++.+..+...++++... ..+..++.+.|. ++||.+. +..     ..+.+|++++ ..++++++++++++|++++
T Consensus       395 ~~~g~~~~~~~~~~~~~~~~-~~~~~~l~~~L~-~~Gi~v~-g~~-----~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l  466 (514)
T 3mad_A          395 AIPSLKILGDPLWVIAVASD-ELNIYQVMEEMA-GRGWRLN-GLH-----RPPAFHVALTLRHTEPGVVDRFLADLQDAV  466 (514)
T ss_dssp             TSTTCEESSCCSSEEEEECS-SSCHHHHHHHHH-TTTCBCE-EET-----TTTEEEEECCGGGGSTTHHHHHHHHHHHHH
T ss_pred             hCCCeEEeCCCeEEEEEeCC-CCCHHHHHHHHH-hcCCEec-cCC-----CCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            97 78777666667777653 345788999996 8899883 322     1357999997 4456699999999999998


Q ss_pred             HHcC
Q psy16848        479 KSLD  482 (514)
Q Consensus       479 ~~~~  482 (514)
                      +++.
T Consensus       467 ~~~~  470 (514)
T 3mad_A          467 AQVR  470 (514)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.94  E-value=3.5e-26  Score=229.94  Aligned_cols=332  Identities=14%  Similarity=0.083  Sum_probs=223.4

Q ss_pred             CCceeeecccCCCC-CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYK-VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l   92 (514)
                      +...+++|+++... .+|++.+++.+++..|..       ..|..+..+++++++++++|.+  .+++++||++|+..++
T Consensus        11 ~~p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-------~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~   83 (359)
T 1svv_A           11 AKPKPYSFVNDYSVGMHPKILDLMARDNMTQHA-------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC   83 (359)
T ss_dssp             ----CEECSCSCSSCCCHHHHHHHHHHTTCCCC-------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHH
T ss_pred             CCCeeEEecCCCcCCCCHHHHHHHHHHHhhccc-------cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHH
Confidence            34457888763322 368999999988764322       2245688999999999999864  3677788999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhh--hhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQG--IRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      .++..  +||.|+++.+.|.+...+  ++..|.+++.++.++.                                     
T Consensus        84 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-------------------------------------  124 (359)
T 1svv_A           84 SLALR--PWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG-------------------------------------  124 (359)
T ss_dssp             HHHCC--TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTS-------------------------------------
T ss_pred             HHHhC--CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCCCC-------------------------------------
Confidence            98866  999999999999998874  6666666665543210                                     


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                             .-|.+.+++
T Consensus       125 -----------------------------------------------------------------------~~d~~~l~~  133 (359)
T 1svv_A          125 -----------------------------------------------------------------------KLRVADIES  133 (359)
T ss_dssp             -----------------------------------------------------------------------CCCHHHHHH
T ss_pred             -----------------------------------------------------------------------eecHHHHHH
Confidence                                                                                   013455555


Q ss_pred             HHhhc---cCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        251 VLENM---DVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       251 ~l~~~---~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      .+++.   ...++++++++++ ||+|.++|   +++|.++|++||+++|+||+|.....+..+... .........|+++
T Consensus       134 ~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~d~~~  211 (359)
T 1svv_A          134 ALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIARLTDMFY  211 (359)
T ss_dssp             HHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHHHHCSEEE
T ss_pred             HHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhhhcCCEEE
Confidence            55432   1123789999998 79999999   899999999999999999999421122111110 0001113578999


Q ss_pred             cCCcccccCCC-eEEEecHHHHHHHHhhc--CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG-GYIVGTKNFIDTIRSYA--AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G-G~l~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      .|++|+.++.| |+++.++++++.+....  .+..+  ..+.....++.+   .+.+...++.+++++++++++.+.|+.
T Consensus       212 ~s~~K~g~~~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L~~  286 (359)
T 1svv_A          212 IGATKAGGMFGEALIILNDALKPNARHLIKQRGALM--AKGWLLGIQFEV---LMKDNLFFELGAHSNKMAAILKAGLEA  286 (359)
T ss_dssp             EECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTCCC--TTTHHHHHHHHH---HTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCCCceEEEEEcccHHHHHHHHHhcCCccc--ccchhhHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999876666 89998888877665432  22211  112222222222   233445677889999999999999954


Q ss_pred             CCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhC-CeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEK-GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       402 ~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~-GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .++++..+. +.++++.++     .++.+.|+ ++ ||.+.+..    +.+.+++|++++..++++++++++++|+++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~-----~~~~~~l~-~~~gi~v~~~~----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  356 (359)
T 1svv_A          287 CGIRLAWPSASNQLFPILE-----NTMIAELN-NDFDMYTVEPL----KDGTCIMRLCTSWATEEKECHRFVEVLKRLVA  356 (359)
T ss_dssp             TTCCBSSCCSSSEECBEEE-----HHHHHHHT-TTEECEEEEEE----TTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred             CCeEEccCCccceEEEEcC-----HHHHHHHH-HhcCEEEEecc----cCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence            577776444 445555543     47888896 77 99983211    23457999999888999999999999998876


Q ss_pred             Hc
Q psy16848        480 SL  481 (514)
Q Consensus       480 ~~  481 (514)
                      ++
T Consensus       357 ~~  358 (359)
T 1svv_A          357 ST  358 (359)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.94  E-value=7.1e-26  Score=233.38  Aligned_cols=332  Identities=13%  Similarity=0.038  Sum_probs=220.6

Q ss_pred             CceeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CC--cEEEEec
Q psy16848         17 NRVTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KE--AGLVFTS   83 (514)
Q Consensus        17 g~~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~--~~i~~~s   83 (514)
                      ....+|+..+.|+.       +|.+++++.++++...  ...+....|..++.+++++.+....+    .+  ..+++++
T Consensus        48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G  125 (420)
T 4f4e_A           48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGL--PRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALG  125 (420)
T ss_dssp             CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred             CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCC--CCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCc
Confidence            45789998775542       3689999999887621  11222334555666666666554433    23  4566777


Q ss_pred             cccccccchh--hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         84 CYVANDSTLF--TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        84 Gt~a~~~~l~--~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      |++|+..++.  ++..  +||.|+++.++|.+....++..|.+++.++..+.+                           
T Consensus       126 ~t~al~~~~~~~~~~~--~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~---------------------------  176 (420)
T 4f4e_A          126 GTGALKIGADFLRTLN--PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAK---------------------------  176 (420)
T ss_dssp             HHHHHHHHHHHHHHHC--TTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETT---------------------------
T ss_pred             cHHHHHHHHHHHHHhC--CCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccc---------------------------
Confidence            8888888743  4444  99999999999999998888888877766541000                           


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                       +.                                             
T Consensus       177 ---------------------------------~~---------------------------------------------  178 (420)
T 4f4e_A          177 ---------------------------------TN---------------------------------------------  178 (420)
T ss_dssp             ---------------------------------TT---------------------------------------------
T ss_pred             ---------------------------------cC---------------------------------------------
Confidence                                             00                                             


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCCC
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDGQ  316 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~~  316 (514)
                      ..|++.+++.+++. .++++++++++++||||.+++   +++|.++|++||+++|+||+|+....+.  ...++....+ 
T Consensus       179 ~~d~~~l~~~l~~~-~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-  256 (420)
T 4f4e_A          179 GVNFDGMLAALNGY-EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA-  256 (420)
T ss_dssp             EECHHHHHHHHTTC-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH-
T ss_pred             ccCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh-
Confidence            00455666666543 345889999999999999998   6899999999999999999998444331  1111111111 


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEe---cHHHHHHH----HhhcCceEeccCCcHHHHHHHHHHHHHhh-----hchH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTI----RSYAAGFIFTTSLPPTVLAGAREAIRILS-----SQEG  381 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l----~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~  381 (514)
                      ..+.+++++||||.+|.+|   ||++.   ++++++.+    .......  ..+.+...+.++...++...     ..++
T Consensus       257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  334 (420)
T 4f4e_A          257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTN--YSNPPTHGGAIVAAVLASPELRASWVQEL  334 (420)
T ss_dssp             TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCSHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            2367899999999999767   88753   45555443    2211111  12345566666665555321     3456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC----CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        382 VELRAKHQDIVAYLRNELIQI----GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       382 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      ++++++++++++++.+.|++.    ++.+..+.++ ++++.++    ...+.+.+ +++||.+.++           .|+
T Consensus       335 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l-~~~gI~v~~~-----------~Ri  398 (420)
T 4f4e_A          335 GEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT----SAQVDRLR-EEFGIYAVST-----------GRI  398 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC----HHHHHHHH-HHHCEECCTT-----------SEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC----HHHHHHHH-HhCCEEecCC-----------CeE
Confidence            788999999999999999987    5666655555 4444432    34454445 6899998752           299


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHH
Q psy16848        457 APTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +++ ..+++++++++++|++++
T Consensus       399 s~~-~~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          399 CVA-ALNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             EGG-GCCTTTHHHHHHHHHHHH
T ss_pred             EEe-cCCHHHHHHHHHHHHHHh
Confidence            997 457788999999999875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.94  E-value=1.9e-25  Score=228.57  Aligned_cols=287  Identities=17%  Similarity=0.188  Sum_probs=205.3

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..+++++++++++|.+++++++||++|+..++.++..  +||+|+++.+.|.++...++..                
T Consensus        63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~--~gd~vl~~~~~~~~~~~~~~~~----------------  124 (398)
T 1gc0_A           63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHG----------------  124 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHHHT----------------
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhc--CCCEEEEeCCCchhHHHHHHHH----------------
Confidence            4578899999999999999999999999999999988865  9999999999999877544110                


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (398)
T 1gc0_A          125 --------------------------------------------------------------------------------  124 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                  +...|.+++.++..|.+.+++.++    +++++|++++++||+|.+.++++|.++|+++|+++|+|++
T Consensus       125 ------------~~~~g~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~  188 (398)
T 1gc0_A          125 ------------IGEFGVKLRHVDMADLQALEAAMT----PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNT  188 (398)
T ss_dssp             ------------GGGGTCEEEEECTTCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECT
T ss_pred             ------------HHHcCCEEEEECCCCHHHHHHhcC----CCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECC
Confidence                        012244455555555555555553    3589999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHH-HHHhhcCc-eEeccCCcHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFID-TIRSYAAG-FIFTTSLPPTVLAGARE  371 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~-~l~~~~~~-~~~~~~~~~~~~~a~~~  371 (514)
                      |+.+..+.      +   ...++|+++.|+||+++++    ||+++++++.++ .+...... +  +.+.++..++++..
T Consensus       189 ~~~~~~~~------~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  257 (398)
T 1gc0_A          189 YCTPYLQR------P---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMT--GAVLSPHDAALLMR  257 (398)
T ss_dssp             TTHHHHCC------G---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHT--CCCCCHHHHHHHHH
T ss_pred             CcccccCC------c---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccC--CCCCCHHHHHHHHh
Confidence            99665421      1   1236899999999999863    489999887665 55544333 2  34577877777777


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-C--------------cccc----CCCcEEEEEeCCCccHHHHHHHHH
Q psy16848        372 AIRILSSQEGVELRAKHQDIVAYLRNELIQIG-F--------------PVEH----TPSHIIPIKIGNPALNTKICDMLL  432 (514)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------------~~~~----~~~~~~~i~l~~~~~~~~~~~~Ll  432 (514)
                      +++.+     ....++..++.+.+.+.|++.. +              .+..    ..++++.+.++..  .....+.+ 
T Consensus       258 ~l~~~-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~l-  329 (398)
T 1gc0_A          258 GIKTL-----NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG--IGAGRRFM-  329 (398)
T ss_dssp             HHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH--HHHHHHHH-
T ss_pred             ccchH-----HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC--HHHHHHHH-
Confidence            66532     3456666777777777777641 1              1111    2467888888642  23344444 


Q ss_pred             HhCCeEEecccC---------CC------CC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        433 KEKGHYVQPINY---------PT------VP--------VGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       433 ~~~GI~v~~~~~---------~~------~~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      ++.++.+...+.         |.      .+        ..++.+|++++..+++++++.+.++|+++
T Consensus       330 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          330 NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             HHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            578887764221         11      00        12579999999999999999999988764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.94  E-value=4e-26  Score=233.04  Aligned_cols=330  Identities=14%  Similarity=0.055  Sum_probs=216.9

Q ss_pred             CCceeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc---C-----CCcEEE
Q psy16848         16 SNRVTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH---Q-----KEAGLV   80 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~-----~~~~i~   80 (514)
                      .+..++||..+.|++       +|.+.+++.++++...  ..++    +......++++.+++++   +     .+..++
T Consensus        24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~   97 (396)
T 2q7w_A           24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET--TKNY----LGIDGIPEFGRCTQELLFGKGSALINDKRART   97 (396)
T ss_dssp             ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCCCceecccccccCCCCCccCcHHHHHHHHhhcCccc--ccCC----CCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence            345689998888642       4789999988877521  1111    11222355666666665   2     345665


Q ss_pred             --EeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccc
Q psy16848         81 --FTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS  158 (514)
Q Consensus        81 --~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~  158 (514)
                        +++|++|+..++..+....+||.|+++.+.|.+....++..|.+++.++....+                        
T Consensus        98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~------------------------  153 (396)
T 2q7w_A           98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAE------------------------  153 (396)
T ss_dssp             EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETT------------------------
T ss_pred             EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCC------------------------
Confidence              778888988887665423499999999999999988888777776655431000                        


Q ss_pred             ccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEE
Q psy16848        159 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKI  238 (514)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~  238 (514)
                                                          +.                                          
T Consensus       154 ------------------------------------~~------------------------------------------  155 (396)
T 2q7w_A          154 ------------------------------------NH------------------------------------------  155 (396)
T ss_dssp             ------------------------------------TT------------------------------------------
T ss_pred             ------------------------------------CC------------------------------------------
Confidence                                                00                                          


Q ss_pred             EecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCcccc
Q psy16848        239 IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGER  313 (514)
Q Consensus       239 ~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~  313 (514)
                         ..|.+.+++.+++. .++++++++++++||||.+++   +++|.++|++||+++|+||+|+....+.  .+.++...
T Consensus       156 ---~~d~~~l~~~l~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  231 (396)
T 2q7w_A          156 ---TLDFDALINSLNEA-QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAF  231 (396)
T ss_dssp             ---EECHHHHHHHHTTC-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHH
T ss_pred             ---CcCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHH
Confidence               00455555555432 134688999999999999998   6789999999999999999998433321  11111111


Q ss_pred             CCCccCceEEEcCCcccccCCC---eEEEe---cH----HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-----hh
Q psy16848        314 DGQLHNMDIISGTLGKAFGNIG---GYIVG---TK----NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-----SS  378 (514)
Q Consensus       314 ~~~~~~~di~~~S~sK~lg~~G---G~l~~---~~----~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~  378 (514)
                      .. ..+.+++++|+||.+|++|   ||+++   ++    ++++.+.......  ....++..+.++.++++..     ..
T Consensus       232 ~~-~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~  308 (396)
T 2q7w_A          232 AA-MHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRAN--YSNPPAHGASVVATILSNDALRAIWE  308 (396)
T ss_dssp             HH-HCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             Hh-cCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHhcChhhHHHHH
Confidence            11 1246799999999999767   99886   55    3444444322111  1234777888877777532     12


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        379 QEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                      +++++.+++++++++++.+.|++.+    +.+..+.++++ ++.++    ...+.+.+ +++||.+.+           .
T Consensus       309 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gv~v~~-----------~  372 (396)
T 2q7w_A          309 QELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----KEQVLRLR-EEFGVYAVA-----------S  372 (396)
T ss_dssp             HHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----HHHHHHHH-HHHCEECCT-----------T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----HHHHHHHH-HhcCeeecC-----------C
Confidence            4567788889999999999999986    66655555543 44332    23444444 689999874           2


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        454 IRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +|++++. .+++++++++++|+++
T Consensus       373 ~Ris~~~-~~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          373 GRVNVAG-MTPDNMAPLCEAIVAV  395 (396)
T ss_dssp             CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred             ceEEEee-cCHHHHHHHHHHHHhc
Confidence            6999984 4899999999999875

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.94  E-value=2.9e-26  Score=234.70  Aligned_cols=333  Identities=13%  Similarity=0.010  Sum_probs=215.3

Q ss_pred             ceeeecccCCCCC---Chh----HHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CCcEEE--Eecc
Q psy16848         18 RVTCRLSSVQYKV---PKG----GRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KEAGLV--FTSC   84 (514)
Q Consensus        18 ~~~~d~~~~~~~~---~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~i~--~~sG   84 (514)
                      ...+|+..+.|++   +|.    +.+++.+.....+  ..++....|..++.+++.+.+.+..|    .++.++  +++|
T Consensus        28 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~  105 (401)
T 7aat_A           28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM--DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISG  105 (401)
T ss_dssp             TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred             CCceeeeeeeEECCCCCEechHHHHHHHHHhccccc--ccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcc
Confidence            3479998888753   444    5555555444211  22233334545555555555544333    445555  6778


Q ss_pred             ccccccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         85 YVANDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        85 t~a~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      ++++..++..+.. .+|||.|+++.++|......++..|.+++.++..+.+                             
T Consensus       106 ~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------------  156 (401)
T 7aat_A          106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPK-----------------------------  156 (401)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETT-----------------------------
T ss_pred             hHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccc-----------------------------
Confidence            8888877766541 2499999999999999988888888777655431100                             


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                     ..+                                             -
T Consensus       157 -------------------------------~~~---------------------------------------------~  160 (401)
T 7aat_A          157 -------------------------------TCS---------------------------------------------L  160 (401)
T ss_dssp             -------------------------------TTE---------------------------------------------E
T ss_pred             -------------------------------cCc---------------------------------------------c
Confidence                                           000                                             1


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCC---CCCccccCCCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEH---GAGIGERDGQL  317 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~---~~~~~~~~~~~  317 (514)
                      |++.+++.+++ ..+++++++++++|||||.+++   +++|.++|++||+++|+||+|.....+..   ..++..... .
T Consensus       161 d~~~l~~~l~~-~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~  238 (401)
T 7aat_A          161 DFTGAMEDISK-IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE-Q  238 (401)
T ss_dssp             CHHHHHHHHTT-SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-T
T ss_pred             CHHHHHHHHHh-CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh-c
Confidence            55666677766 4567899999999999999988   78999999999999999999984433211   000100001 2


Q ss_pred             cCceEEEcCCcccccCCC---eEEEe---cHH----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-----hhchHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVG---TKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEGV  382 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~  382 (514)
                      .+.+++++||||.+|.+|   ||++.   +++    +.+.+.......  +.+.+...+.++...++..     ...+++
T Consensus       239 ~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  316 (401)
T 7aat_A          239 GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPM--YSNPPMNGARIASLILNTPELRKEWLVEVK  316 (401)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            356889999999999878   98875   555    344444333222  2344555555555445311     034466


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC----CccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        383 ELRAKHQDIVAYLRNELIQIG----FPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      +.+++++++++++.+.|++.+    +.+..+.++++ ++.++     .+....+++++||.+.+           .+|++
T Consensus       317 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~~-----------~~Ris  380 (401)
T 7aat_A          317 GMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----PEQVERLTKEFSIYMTK-----------DGRIS  380 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCT-----------TCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC-----HHHHHHHHHhCCEeccC-----------CCeEE
Confidence            788899999999999999885    55555555544 33322     34446665688999853           36999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHH
Q psy16848        458 PTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++. .+++++++++++|++++
T Consensus       381 ~~~-~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          381 VAG-VASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             GGG-CCTTTHHHHHHHHHHHH
T ss_pred             ecc-CChhhHHHHHHHHHHHh
Confidence            984 45566999999999875

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.94  E-value=5.1e-25  Score=226.83  Aligned_cols=337  Identities=18%  Similarity=0.187  Sum_probs=216.4

Q ss_pred             eeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc--chHHHHH-HHHHHhHcCCCcEE-EEeccccccccchh
Q psy16848         20 TCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN--SLFHEKL-EEDVAKLHQKEAGL-VFTSCYVANDSTLF   93 (514)
Q Consensus        20 ~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~-~~~la~~~~~~~~i-~~~sGt~a~~~~l~   93 (514)
                      .+++ .+.+++ +|++.+++.+++. .++.++.++.+..+.  .+..+++ ++++++++|.+... +++||++|+..++.
T Consensus        34 ~i~l~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~  112 (425)
T 3ecd_A           34 QVELIASENIV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVML  112 (425)
T ss_dssp             SEECCTTCCCC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred             ceeeecccCCC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHH
Confidence            4555 445555 8999999999884 444333333332222  1234444 47888999988874 48999999999998


Q ss_pred             hccccCCCceEEecCccchhhh-hhhh--cCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMI-QGIR--NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~-~~~~--~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++..  +||.|+++.++|.+.. .+..  ..+..+                                             
T Consensus       113 ~~~~--~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~---------------------------------------------  145 (425)
T 3ecd_A          113 ALAK--PGDTVLGMSLDAGGHLTHGAKPALSGKWF---------------------------------------------  145 (425)
T ss_dssp             HHCC--TTCEEEEECC------------------C---------------------------------------------
T ss_pred             HccC--CCCEEEEcccccccceecchhhhhcccce---------------------------------------------
Confidence            8865  9999999999998732 2211  112111                                             


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCC
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HND  244 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d  244 (514)
                                                                                       ++++++      ..|
T Consensus       146 -----------------------------------------------------------------~~~~~~~~~~~~~~d  160 (425)
T 3ecd_A          146 -----------------------------------------------------------------NALQYGVSRDTMLID  160 (425)
T ss_dssp             -----------------------------------------------------------------EEEEECCCTTTSSCC
T ss_pred             -----------------------------------------------------------------eeeecCCCcccCccC
Confidence                                                                             111222      115


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      .+.+++.+.+.   ++++|++++++|  |...++++|.++|++||+++|+||+|..|.... +    .........|+++
T Consensus       161 ~~~l~~~i~~~---~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~-~----~~~~~~~~~di~~  230 (425)
T 3ecd_A          161 YDQVEALAQQH---KPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAA-G----RHANPVEHAHVVT  230 (425)
T ss_dssp             HHHHHHHHHHH---CCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHT-T----SSCCGGGTCSEEE
T ss_pred             HHHHHHHHhhc---CCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhc-c----cccCchhcCcEEE
Confidence            66777776532   468999988877  467789999999999999999999987554321 1    0111112368999


Q ss_pred             cCCccccc-CCCeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        325 GTLGKAFG-NIGGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       325 ~S~sK~lg-~~GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +|+||+++ +.||+++++ +.+.+.+........ ..+.+...++++..++......++++.+++++++.+++.+.|.+.
T Consensus       231 ~s~sK~l~g~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (425)
T 3ecd_A          231 STTHKTLRGPRGGFVLTNDEEIAKKINSAVFPGL-QGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG  309 (425)
T ss_dssp             EESSGGGCCCSCEEEEESCHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCcccCCCCcEEEEeCCHHHHHHHHhhhCccc-cCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999994 346999887 567777765443321 223344444444555544434566788999999999999999998


Q ss_pred             CCcccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCC---CCCCCcEEEEEeC----CCCCHHHHHHHHH
Q psy16848        403 GFPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPT---VPVGEEKIRLAPT----PFHTREMIDKFVT  472 (514)
Q Consensus       403 g~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~---~~~~~~~iRl~~~----~~~t~e~id~~~~  472 (514)
                      |+.+..  +.++++++.++. ..+...+.+.| +++||.+.++..+.   .+.....+|++++    ..+++++++++++
T Consensus       310 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~  388 (425)
T 3ecd_A          310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQAL-ERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGR  388 (425)
T ss_dssp             TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHH
T ss_pred             CCeeccCCCCceEEEEEeCCCCCCHHHHHHHH-HHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHH
Confidence            887764  345677777754 23466777777 58999998544322   1223568999944    4556999999999


Q ss_pred             HHHHHHHHc
Q psy16848        473 DLLAVWKSL  481 (514)
Q Consensus       473 ~l~~~l~~~  481 (514)
                      +|++++++.
T Consensus       389 ~l~~~l~~~  397 (425)
T 3ecd_A          389 LILEVFEAL  397 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999999875

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.94  E-value=4.1e-25  Score=227.05  Aligned_cols=338  Identities=17%  Similarity=0.178  Sum_probs=225.8

Q ss_pred             eeeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcE-EEEeccccccccch
Q psy16848         19 VTCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAG-LVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~-i~~~sGt~a~~~~l   92 (514)
                      ..+++ .+.+|. +|++.+++.+++. .++..+.++.+..+.   .++.+.+++++++++|.+.. ++++|||+|+..++
T Consensus        26 ~~i~l~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~  104 (417)
T 3n0l_A           26 EGLEMIASENFT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVY  104 (417)
T ss_dssp             HSEECCTTCCCC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHH
T ss_pred             cCeeeecccCCC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHH
Confidence            34665 344554 8999999998884 443333332322222   23333455588999998776 88899999999999


Q ss_pred             hhccccCCCceEEecCccchhhhh---hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQ---GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.+  +||.|+++.++|.+...   .+...|..                                             
T Consensus       105 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~g~~---------------------------------------------  137 (417)
T 3n0l_A          105 AALIN--PGDKILGMDLSHGGHLTHGAKVSSSGKM---------------------------------------------  137 (417)
T ss_dssp             HHHSC--TTCEEEEECC----------------CC---------------------------------------------
T ss_pred             HHhcC--CCCEEEecccccccccchhhhhhhhcce---------------------------------------------
Confidence            88866  99999999999977543   11111111                                             


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCC
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HND  244 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d  244 (514)
                                                                                       ..+++++     ..|
T Consensus       138 -----------------------------------------------------------------~~~~~~~~~~~~~~d  152 (417)
T 3n0l_A          138 -----------------------------------------------------------------YESCFYGVELDGRID  152 (417)
T ss_dssp             -----------------------------------------------------------------SEEEEECCCTTSSCC
T ss_pred             -----------------------------------------------------------------eeeEeccCCCCCCcC
Confidence                                                                             1122222     136


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      .+.+++.+.+.   ++++|++++++|  |...++++|.++|++||+++|+|++|+.|......     ........|+++
T Consensus       153 ~~~l~~~i~~~---~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~~~di~~  222 (417)
T 3n0l_A          153 YEKVREIAKKE---KPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGE-----HPSPFPYAHVVS  222 (417)
T ss_dssp             HHHHHHHHHHH---CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS-----SCCCTTTCSEEE
T ss_pred             HHHHHHHHHhc---CCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhccc-----CCCccccceEEE
Confidence            67777777632   467888777765  89999999999999999999999998755431110     011112468999


Q ss_pred             cCCcccccC-CCeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        325 GTLGKAFGN-IGGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       325 ~S~sK~lg~-~GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +|+||++++ .||+++++ +++.+.+........ ..+.+...++++..++......++++.++++.++++++.+.|++.
T Consensus       223 ~s~sK~l~g~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  301 (417)
T 3n0l_A          223 STTHKTLRGPRGGIIMTNDEELAKKINSAIFPGI-QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR  301 (417)
T ss_dssp             EESSTTTCSCSCEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeCccccCCCCeeEEEECCHHHHHHHhhhhCCcc-cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999944 46999988 788888876543321 224455666666666665444566788899999999999999998


Q ss_pred             CCcccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEEEEeCC----CCCHHHHHHHHH
Q psy16848        403 GFPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIRLAPTP----FHTREMIDKFVT  472 (514)
Q Consensus       403 g~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iRl~~~~----~~t~e~id~~~~  472 (514)
                      |+.+..  ..++++++.++. ..+..++.+.| +++||.+.+...+..   +.....+|++++.    ..++++++++++
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~  380 (417)
T 3n0l_A          302 KFKLVSDGTDNHLVLMSFLDREFSGKDADLAL-GNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSN  380 (417)
T ss_dssp             TCEEGGGSCSSSEEEEECTTSSSCHHHHHHHH-HHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             CceeccCCCCceEEEEEcccCCCCHHHHHHHH-HHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHH
Confidence            877654  345577777753 33566777777 589999987654332   2234679998752    367899999999


Q ss_pred             HHHHHHHHc
Q psy16848        473 DLLAVWKSL  481 (514)
Q Consensus       473 ~l~~~l~~~  481 (514)
                      +|++++++.
T Consensus       381 ~l~~~l~~~  389 (417)
T 3n0l_A          381 YIADILDDV  389 (417)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcc
Confidence            999998864

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.94  E-value=1.1e-25  Score=232.37  Aligned_cols=308  Identities=10%  Similarity=-0.046  Sum_probs=213.3

Q ss_pred             CcchHHHHHHHHHHhHcCCC-cEEEEeccc-ccc--ccchhhccccCC----------CceEEecCccchhhhhhhhcCC
Q psy16848         57 GNSLFHEKLEEDVAKLHQKE-AGLVFTSCY-VAN--DSTLFTLGKMIP----------GLHYISDAGNHASMIQGIRNSS  122 (514)
Q Consensus        57 ~~~~~~~~~~~~la~~~~~~-~~i~~~sGt-~a~--~~~l~~l~~~~~----------gd~v~~~~~~h~~~~~~~~~~~  122 (514)
                      +......++++.++++++.+ ..+++++|+ +++  ..++.++....|          ||+|+++.++|......++..|
T Consensus        75 ~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g  154 (427)
T 3ppl_A           75 GGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG  154 (427)
T ss_dssp             CCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC
Confidence            33344578888888888754 345555555 455  366666543114          8999999999999988888887


Q ss_pred             CCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeec
Q psy16848        123 APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD  202 (514)
Q Consensus       123 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~  202 (514)
                      .+++.++.++                                                               .      
T Consensus       155 ~~~~~v~~~~---------------------------------------------------------------~------  165 (427)
T 3ppl_A          155 FEMISVPMNE---------------------------------------------------------------D------  165 (427)
T ss_dssp             CEEEEEEEET---------------------------------------------------------------T------
T ss_pred             CEEEEeCCCC---------------------------------------------------------------C------
Confidence            7776554310                                                               0      


Q ss_pred             CchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe-cCCCCCccccCH---
Q psy16848        203 GQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE-TVHSMTGAICPL---  278 (514)
Q Consensus       203 G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~-~~~nptG~~~~l---  278 (514)
                                                             ..|.+.+++.++   .+++++|+++ +++||||.+++.   
T Consensus       166 ---------------------------------------g~d~~~l~~~l~---~~~~~~v~~~p~~~NPtG~~~~~~~~  203 (427)
T 3ppl_A          166 ---------------------------------------GPDMDAVEELVK---NPQVKGMWVVPVFSNPTGFTVTEDVA  203 (427)
T ss_dssp             ---------------------------------------EECHHHHHHHTT---STTEEEEEECCSSCTTTCCCCCHHHH
T ss_pred             ---------------------------------------CCCHHHHHHHHh---cCCCeEEEECCCCCCCCCccCCHHHH
Confidence                                                   004455555442   2457888754 899999999995   


Q ss_pred             HHHHHHH-HHcCCEEEEeccccccccCCCCCCccccCCC-----ccCceEEEcCCcccccCCC---eEEEecHHHHHHHH
Q psy16848        279 KELCEVS-HQHGALTFVDEVHAVGLYGEHGAGIGERDGQ-----LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIR  349 (514)
Q Consensus       279 ~~l~~l~-~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~-----~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~  349 (514)
                      ++|.++| ++||+++|+||+|+...++..+........+     ..+.+++++||||++++ |   ||+++++++++.+.
T Consensus       204 ~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-G~r~G~~~~~~~l~~~~~  282 (427)
T 3ppl_A          204 KRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLA-GAGVSFFLTSAENRKWYT  282 (427)
T ss_dssp             HHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCT-TSSCEEEECCHHHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCc-CccEEEEEcCHHHHHHHH
Confidence            5888888 9999999999999954443322111111111     23678999999999543 5   99999999999887


Q ss_pred             hhcCceEeccCCcHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHhC-----CCccccC-CCcEEEEEeCCC
Q psy16848        350 SYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEGVELRAKHQDIVAYLRNELIQI-----GFPVEHT-PSHIIPIKIGNP  421 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~-~~~~~~i~l~~~  421 (514)
                      ......  +.+.+...+.++..+++..  ...++.+.++.++++++.+.+.|.+.     ++.+..+ .+.++++.++..
T Consensus       283 ~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~  360 (427)
T 3ppl_A          283 GHAGIR--GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG  360 (427)
T ss_dssp             HHHHHH--CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT
T ss_pred             HHhhcc--cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc
Confidence            765444  3366778887777777531  13456677788888888888777652     3554444 355778888764


Q ss_pred             ccHHHHHHHHHHhCCeEEecccCCCC---CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        422 ALNTKICDMLLKEKGHYVQPINYPTV---PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       422 ~~~~~~~~~Ll~~~GI~v~~~~~~~~---~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                       +..++.+.| .++||.+.++..++.   ....+++|++++. .+++++++++++|++++++.
T Consensus       361 -~~~~~~~~l-~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~-~~~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          361 -TASRVAELA-KEAGIALTGAGSSYPLRQDPENKNLRLAPSL-PPVEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             -CHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHH-HHCCCEEecCcCcCCCCCCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHH
Confidence             577888888 499999999443232   1357899999974 48999999999999998764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.94  E-value=2e-25  Score=230.71  Aligned_cols=358  Identities=13%  Similarity=0.109  Sum_probs=220.8

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc--ccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccc
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN--ISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDST   91 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~   91 (514)
                      ++..++|++++. ..+|++.+++.+++... ..+..+.+  ..+..+..+++++++++++|.+  ..+++++||+|+..+
T Consensus        17 ~~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~   94 (432)
T 3a9z_A           17 NRKVYMDYNATT-PLEPEVIQAVTEAMKEA-WGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLV   94 (432)
T ss_dssp             -CCEECBTTTCC-CCCHHHHHHHHHHHHHC-CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHH
T ss_pred             CCcEEeeCCccC-CCCHHHHHHHHHHHHHh-cCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHH
Confidence            455677776655 44789999999998762 11111111  1123456789999999999864  456666678899888


Q ss_pred             hhhccc------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         92 LFTLGK------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        92 l~~l~~------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      +.++.+      ..+||.|++..+.|...                                 ..+++.+..|+       
T Consensus        95 ~~~~~~~~~~~~~~~gd~vl~~~p~y~~~---------------------------------~~i~~~~~~h~-------  134 (432)
T 3a9z_A           95 IHSTVRCFHEQQTLQGRTVDQISPEEGTR---------------------------------PHFITCTVEHD-------  134 (432)
T ss_dssp             HHHHHHHHHHHHHHC------------CC---------------------------------CEEEEETTCCH-------
T ss_pred             HHHHHhhhhhccccCCccccccccccccC---------------------------------CeEEEecCcch-------
Confidence            887741      02788777766655321                                 00111100000       


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC--
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN--  243 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~--  243 (514)
                                                               .+              ...+.......|++++.++.+  
T Consensus       135 -----------------------------------------s~--------------~~~~~~~~~~~g~~v~~v~~~~~  159 (432)
T 3a9z_A          135 -----------------------------------------SI--------------RLPLEHLVEDQVAEVTFVPVSKV  159 (432)
T ss_dssp             -----------------------------------------HH--------------HHHHHHHHHTTSCEEEEECCCTT
T ss_pred             -----------------------------------------hH--------------HHHHHHHHHhcCcEEEEEecCcc
Confidence                                                     00              000111122346666666632  


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC----------CEEEEeccccccccCCCCCCcccc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG----------ALTFVDEVHAVGLYGEHGAGIGER  313 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g----------v~li~Dea~~~g~~g~~~~~~~~~  313 (514)
                      +...+.+.+++..++++++|++++++||||.++|+++|.++|+++|          +++|+|++|+.+..   .  + +.
T Consensus       160 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~--~-~~  233 (432)
T 3a9z_A          160 NGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---R--V-DV  233 (432)
T ss_dssp             TSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---C--C-CH
T ss_pred             cCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc---c--c-Ch
Confidence            2222334444444567899999999999999999999999999999          99999999986532   1  1 11


Q ss_pred             CCCccCceEEEcCCcccccCCCeEEEecHHH-HHHHHhhcCc-----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        314 DGQLHNMDIISGTLGKAFGNIGGYIVGTKNF-IDTIRSYAAG-----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       314 ~~~~~~~di~~~S~sK~lg~~GG~l~~~~~~-~~~l~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      .  ..++|++++|+||++|+..|+++++++. ...+.....+     .....+.+...++++.++++.+. +++++++++
T Consensus       234 ~--~~~~d~~~~s~~K~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~  310 (432)
T 3a9z_A          234 E--DLGVDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAH  310 (432)
T ss_dssp             H--HHCCSEEEEEGGGTTCCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             h--hcCCCEEEEehhHhcCCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHH
Confidence            1  2357899999999988655999988765 2222211100     00012456777778888888764 467888999


Q ss_pred             HHHHHHHHHHHHHhC-CCccc--cC------CCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCC---------
Q psy16848        388 HQDIVAYLRNELIQI-GFPVE--HT------PSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVP---------  448 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~-g~~~~--~~------~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~---------  448 (514)
                      ++++++++.+.|+++ |+.+.  .+      .+.++.+.+++ ..+..++.+.+   .++.+..+..+...         
T Consensus       311 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l  387 (432)
T 3a9z_A          311 MRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHEDRPSPVL  387 (432)
T ss_dssp             HHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGTTSCCHHH
T ss_pred             HHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCCCCccHHH
Confidence            999999999999885 55432  22      23366677764 22345555544   37777665433210         


Q ss_pred             ---C-----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        449 ---V-----GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       449 ---~-----~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                         .     ..+++|++++..+|++|+++++++|++++++++
T Consensus       388 ~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~  429 (432)
T 3a9z_A          388 LSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE  429 (432)
T ss_dssp             HHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence               0     137999999988899999999999999987653

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.94  E-value=3e-25  Score=230.59  Aligned_cols=337  Identities=12%  Similarity=0.038  Sum_probs=223.9

Q ss_pred             CCc-eeeecccCCCCC---ChhHHHHHHHHHHHhC----CCCCCcCcccCcchHHHHHHHHHHhHc-CCC-------cEE
Q psy16848         16 SNR-VTCRLSSVQYKV---PKGGRKCLGEALEKFG----TGAGGTRNISGNSLFHEKLEEDVAKLH-QKE-------AGL   79 (514)
Q Consensus        16 ~g~-~~~d~~~~~~~~---~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-------~~i   79 (514)
                      +++ ..+|+..+.|++   ++.+.+++.+++....    ....++....|    ..++++.+++++ |.+       +.+
T Consensus        46 ~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~i~  121 (448)
T 3meb_A           46 DTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAG----FPLFLEAAQFLMFGKDSKAAQEGRIA  121 (448)
T ss_dssp             CCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred             CCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcc----hHHHHHHHHHHhcCCCccccCcCcEE
Confidence            444 469998888864   5667777777744332    12222222233    356666666665 643       566


Q ss_pred             E--Eecccccccc--chhhccccCCCceEEecCccchhhhhhhh----cCCCCeeeccCCChHHHHHHHHhcccCCCcEE
Q psy16848         80 V--FTSCYVANDS--TLFTLGKMIPGLHYISDAGNHASMIQGIR----NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV  151 (514)
Q Consensus        80 ~--~~sGt~a~~~--~l~~l~~~~~gd~v~~~~~~h~~~~~~~~----~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  151 (514)
                      +  +++||+|+..  .+.++..  +||+|+++.++|.+....++    ..|.+++.++..|.+                 
T Consensus       122 ~~~t~ggt~al~l~~~~~~~~~--~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~-----------------  182 (448)
T 3meb_A          122 SCQSLSGTGSLHIGFEFLHLWM--PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKD-----------------  182 (448)
T ss_dssp             EEEESHHHHHHHHHHHHHHHHC--TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTT-----------------
T ss_pred             EEECCcHHHHHHHHHHHHHHhC--CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccc-----------------
Confidence            6  7778888765  4445544  99999999999999998888    888888776542100                 


Q ss_pred             EeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHh
Q psy16848        152 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIR  231 (514)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~  231 (514)
                                                                ++.                                   
T Consensus       183 ------------------------------------------~~~-----------------------------------  185 (448)
T 3meb_A          183 ------------------------------------------GEL-----------------------------------  185 (448)
T ss_dssp             ------------------------------------------SCS-----------------------------------
T ss_pred             ------------------------------------------cCC-----------------------------------
Confidence                                                      000                                   


Q ss_pred             hCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---
Q psy16848        232 NSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE---  305 (514)
Q Consensus       232 ~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~---  305 (514)
                                .-|++.+++.+++. .++++++++++++||||.+++   +++|.++|++||+++|+||+|.....+.   
T Consensus       186 ----------~~d~e~l~~~l~~~-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~  254 (448)
T 3meb_A          186 ----------EIDFSNTKKDIQSA-PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA  254 (448)
T ss_dssp             ----------SBCHHHHHHHHHHS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH
T ss_pred             ----------CcCHHHHHHHHHhC-CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc
Confidence                      01556666666543 234788999999999999999   6779999999999999999998433221   


Q ss_pred             CCCCccccCCCccCceEEEcCCcccccCCC---eEE--Ee--------c-H----HHHHHHHhhcCceEeccCCcHHHHH
Q psy16848        306 HGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYI--VG--------T-K----NFIDTIRSYAAGFIFTTSLPPTVLA  367 (514)
Q Consensus       306 ~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l--~~--------~-~----~~~~~l~~~~~~~~~~~~~~~~~~~  367 (514)
                      ...++..... ....++++.||||.+|.+|   ||+  ++        + +    ++++.+.......  ..+.+...+.
T Consensus       255 ~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~  331 (448)
T 3meb_A          255 DAFAVRMFVD-AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKT--WSMSAIHGAY  331 (448)
T ss_dssp             HTHHHHHHHH-TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTT--TSSCCHHHHH
T ss_pred             CchhHHHHhh-cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcc--cCCccHHHHH
Confidence            0001111101 1245788999999999777   887  55        3 4    5666555433222  2245667777


Q ss_pred             HHHHHHHHhh-----hchHHHHHHHHHHHHHHHHHHHHhCC---------CccccCCCcEEE-EEeCCCccHHHHHHHHH
Q psy16848        368 GAREAIRILS-----SQEGVELRAKHQDIVAYLRNELIQIG---------FPVEHTPSHIIP-IKIGNPALNTKICDMLL  432 (514)
Q Consensus       368 a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~-i~l~~~~~~~~~~~~Ll  432 (514)
                      ++..+++...     .+.+++++++++++++++.+.|++.+         +.+..+.+.++. ..++     .+++..++
T Consensus       332 a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~ll  406 (448)
T 3meb_A          332 IVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-----PEHVDYLK  406 (448)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-----HHHHHHHH
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-----HHHHHHHH
Confidence            7777665321     13467788999999999999999874         334444555443 3332     46677776


Q ss_pred             HhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        433 KEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       433 ~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++||++.++.          .|++++ ..+++++++++++|++++++++
T Consensus       407 ~~~gV~v~~G~----------gRis~a-~~~~~~i~~~~~~l~~~l~~~~  445 (448)
T 3meb_A          407 EKWSIYLVKAG----------GRMSMC-GLTESNCDYVAEAIHDAVTKLP  445 (448)
T ss_dssp             HHHCEEECSGG----------GEEEGG-GCCTTTHHHHHHHHHHHHHHSC
T ss_pred             HhCCEEEeCCC----------cEEEEe-cCCHHHHHHHHHHHHHHHHhcc
Confidence            68899998754          299997 4467789999999999998764

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.94  E-value=8.8e-26  Score=224.95  Aligned_cols=280  Identities=16%  Similarity=0.128  Sum_probs=198.7

Q ss_pred             HHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhc
Q psy16848         64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  143 (514)
Q Consensus        64 ~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  143 (514)
                      ++++++++++|.++.++++||++|+..++.++..  +||.|+++.+.|.+....++.                       
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~--~g~~v~~~~~~~~~~~~~~~~-----------------------   56 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEH-----------------------   56 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHT-----------------------
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCCcchHHHHHHH-----------------------
Confidence            6889999999998899999999999999988865  999999999999987654321                       


Q ss_pred             ccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeee
Q psy16848        144 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIH  223 (514)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~  223 (514)
                                                                                                      
T Consensus        57 --------------------------------------------------------------------------------   56 (331)
T 1pff_A           57 --------------------------------------------------------------------------------   56 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH-cCCEEEEeccccccc
Q psy16848        224 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDEVHAVGL  302 (514)
Q Consensus       224 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~-~gv~li~Dea~~~g~  302 (514)
                           .+...|++++.++..|.+.+++.++    +++++|++++++||+|.++|+++|.++|++ +|+++|+|++|+.+.
T Consensus        57 -----~~~~~g~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~  127 (331)
T 1pff_A           57 -----QLRKFGVEVDFIDMAVPGNIEKHLK----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI  127 (331)
T ss_dssp             -----HHHHTTCEEEEECTTSTTHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH
T ss_pred             -----HHHhcCCEEEEeCCCCHHHHHHhhc----CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccc
Confidence                 0111233444444445555544443    458999999999999999999999999999 999999999999665


Q ss_pred             cCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecH-HHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHh
Q psy16848        303 YGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTK-NFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRIL  376 (514)
Q Consensus       303 ~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~  376 (514)
                      ...      +.   ..++|++++|+||+++++    +|++++++ ++++.+...... +  +...++..+.++...++..
T Consensus       128 ~~~------~~---~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~  196 (331)
T 1pff_A          128 LTN------PL---DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDIT--GAIISPHDAWLITRGTLTL  196 (331)
T ss_dssp             HCC------GG---GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCC--CCCCCHHHHHHHHHHHHHH
T ss_pred             cCC------hh---hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhc--CCCCCHHHHHHHHcCcchH
Confidence            421      11   236899999999999753    48999998 899888876655 3  3456777776666666543


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHhC---------------CCccc----cCCCcEEEEEeCCCccHHHHHHHHHHhCCe
Q psy16848        377 SSQEGVELRAKHQDIVAYLRNELIQI---------------GFPVE----HTPSHIIPIKIGNPALNTKICDMLLKEKGH  437 (514)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~----~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI  437 (514)
                      .     ...+...++.+.+.+.+++.               ++.+.    ...++++.+.++   +..++.+.| +++||
T Consensus       197 ~-----~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l-~~~gI  267 (331)
T 1pff_A          197 D-----MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD---GLEKAKKVL-DNCHV  267 (331)
T ss_dssp             H-----HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---SHHHHHHHH-HTCSS
T ss_pred             H-----HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---CHHHHHHHH-HhCCC
Confidence            1     23333444444555555432               11111    124568888876   355676777 58999


Q ss_pred             EEeccc---------CCCC--------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        438 YVQPIN---------YPTV--------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       438 ~v~~~~---------~~~~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .+++.+         .|..              ...++.+|++++..++++++++++++|+++
T Consensus       268 ~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          268 VSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             ceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            876542         1110              112579999999999999999999998754

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.94  E-value=6.5e-25  Score=224.01  Aligned_cols=286  Identities=14%  Similarity=0.152  Sum_probs=208.5

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..+++++++++++|.+++++++||++|+..++.++.+  +||+|+++.+.|.++...+.                  
T Consensus        64 ~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~--~gd~Vi~~~~~y~~~~~~~~------------------  123 (392)
T 3qhx_A           64 GNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLR--PGDHVVIPDDAYGGTFRLID------------------  123 (392)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHH------------------
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHH------------------
Confidence            3577899999999999999999999999999999988865  99999999999988764431                  


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (392)
T 3qhx_A          124 --------------------------------------------------------------------------------  123 (392)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                ..+...|.++++++.+|.+.+++.++    +++++|++++++||+|.+.|+++|.++|++||+++|+|++
T Consensus       124 ----------~~~~~~g~~~~~v~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~  189 (392)
T 3qhx_A          124 ----------KVFTGWNVEYTPVALADLDAVRAAIR----PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNT  189 (392)
T ss_dssp             ----------HTGGGGTCEEEEECTTCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECT
T ss_pred             ----------HHHHhcCcEEEEeCCCCHHHHHHhhC----CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECC
Confidence                      01122344555566556666555553    4689999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      |+.+...       ..  ...++|+++.|+||++++.    ||+++.+ +++.+.+......+  +...++..++++...
T Consensus       190 ~~~~~~~-------~~--~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~  258 (392)
T 3qhx_A          190 FASPALQ-------QP--LSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGA--GAVPGPFDAYLTMRG  258 (392)
T ss_dssp             TTCTTTC-------CG--GGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHH
T ss_pred             CcccccC-------Ch--HHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhh
Confidence            9854321       11  1347899999999999874    4888887 68888777655443  446677777776666


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHHH
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDMLL  432 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~Ll  432 (514)
                      ++.+     ....++..++.+++.+.|++. ++..+                  ...++++.+.++.. .....+.+.| 
T Consensus       259 l~~l-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l-  332 (392)
T 3qhx_A          259 LKTL-----VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKT-  332 (392)
T ss_dssp             HTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHC-
T ss_pred             hhHH-----HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhC-
Confidence            6532     345667778888888888875 22111                  11256889998763 4566777777 


Q ss_pred             HhCCeEEecccCCCC-----------------CCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        433 KEKGHYVQPINYPTV-----------------PVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       433 ~~~GI~v~~~~~~~~-----------------~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      +..++.++.+..+..                 ...++.+|+|++...++++++.+.++|
T Consensus       333 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             SSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence            477777765543210                 023678999999877777777776655

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.94  E-value=5.3e-25  Score=225.89  Aligned_cols=285  Identities=13%  Similarity=0.115  Sum_probs=202.3

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..+++++++++++|.+++++++||++|+..++.++.+  +||+|+++.+.|.+....++.                 
T Consensus        79 ~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~-----------------  139 (414)
T 3ndn_A           79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLG--AGDRLVAARSLFGSCFVVCSE-----------------  139 (414)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEESCCCHHHHHHHHT-----------------
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCccchHHHHHHH-----------------
Confidence            4578899999999999999999999999999999988866  999999999999887644322                 


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (414)
T 3ndn_A          140 --------------------------------------------------------------------------------  139 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                 .+...|.++++++.+|.+.+++.++    +++++|++++++||+|.+.++++|.++|+++|+++|+|++
T Consensus       140 -----------~~~~~g~~~~~v~~~d~~~l~~ai~----~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~  204 (414)
T 3ndn_A          140 -----------ILPRWGVQTVFVDGDDLSQWERALS----VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNV  204 (414)
T ss_dssp             -----------HHHHTTCEEEEECTTCHHHHHHHTS----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             -----------HHHHcCcEEEEeCCCCHHHHHHhcC----CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECC
Confidence                       1122455566666556666655553    4588999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHH-HHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFID-TIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      |+.+....         ....+.|+++.|+||++++.|    |+++++++.+. .+......+  +...++..++++...
T Consensus       205 ~~~~~~~~---------~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~--g~~~~~~~a~~~~~~  273 (414)
T 3ndn_A          205 FATPLLQQ---------GFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHT--GPAMSAFNAWVLLKG  273 (414)
T ss_dssp             TTHHHHCC---------CGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHH--CCCCCHHHHHHHHHH
T ss_pred             CcccccCC---------chhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Confidence            98554311         113367999999999998744    89999887765 555433333  334566665555444


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCC-----CccHHHHH
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGN-----PALNTKIC  428 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~-----~~~~~~~~  428 (514)
                      ++     .+....++..++++++.+.|++. ++..+                  ...+.++++.++.     ......+.
T Consensus       274 l~-----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~  348 (414)
T 3ndn_A          274 LE-----TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVL  348 (414)
T ss_dssp             GG-----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHH
Confidence            43     33456677788888888888876 32211                  1135689999965     33466777


Q ss_pred             HHHHHhCCeEEecccCCCC--------------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        429 DMLLKEKGHYVQPINYPTV--------------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       429 ~~Ll~~~GI~v~~~~~~~~--------------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.| +..++.++.|..+..                    ...++++|++++..    +++.+++.|+++
T Consensus       349 ~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e----~~~dli~dl~~a  412 (414)
T 3ndn_A          349 DKM-RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLE----DTDDLIADIDRA  412 (414)
T ss_dssp             HHC-SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHH
T ss_pred             HhC-ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHh
Confidence            777 467777665543221                    12467999999954    444555555544

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.94  E-value=1.2e-25  Score=230.84  Aligned_cols=329  Identities=12%  Similarity=0.053  Sum_probs=217.0

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CCC-------cE--EEEe
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QKE-------AG--LVFT   82 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-------~~--i~~~   82 (514)
                      ....++||..++|++   +|.+.+++.++..   ....++    +......++++.+++++ +.+       ..  ..+.
T Consensus        39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~---~~~~~y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~  111 (409)
T 4eu1_A           39 PAKRKVNLSIGVYRDDADQPFVLECVKQATL---GTNMDY----APVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTL  111 (409)
T ss_dssp             CCSSCEECCCSSCCCTTSCCCCCHHHHTCCC---CSCCCC----CCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEES
T ss_pred             CCcCceeeeeeEEECCCCCEeecHHHHhcCc---cccccC----CCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecc
Confidence            345689999888753   6788888877611   111111    11222356666777664 432       23  2356


Q ss_pred             ccccccccc---hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         83 SCYVANDST---LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        83 sGt~a~~~~---l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      +|+.++..+   +.++.  .+||.|+++.+.|.+....++..|.+++.++..+.+                         
T Consensus       112 ~g~ga~~~~~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~-------------------------  164 (409)
T 4eu1_A          112 GGTGALRIGGDLLNRFV--ANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPA-------------------------  164 (409)
T ss_dssp             HHHHHHHHHHHHGGGTS--SSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETT-------------------------
T ss_pred             cchHHHHHHHHHHHHhc--CCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCc-------------------------
Confidence            677776543   33443  489999999999999998888888887766531000                         


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                         +.                                           
T Consensus       165 -----------------------------------~~-------------------------------------------  166 (409)
T 4eu1_A          165 -----------------------------------TK-------------------------------------------  166 (409)
T ss_dssp             -----------------------------------TT-------------------------------------------
T ss_pred             -----------------------------------CC-------------------------------------------
Confidence                                               00                                           


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC---CCCCcccc
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE---HGAGIGER  313 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~---~~~~~~~~  313 (514)
                        ..|++.+++.+++. .++++++++++|+||||.+++   +++|.++|++||+++|+||+|+.+..+.   .+.++...
T Consensus       167 --~~d~~~l~~~l~~~-~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~  243 (409)
T 4eu1_A          167 --GLNLAGMLECLDKA-PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHL  243 (409)
T ss_dssp             --EECHHHHHHHHHHS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred             --cCcHHHHHHHHHhC-CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHH
Confidence              01455666666542 124677888999999999999   6679999999999999999998443332   11112111


Q ss_pred             CCCccCceEEEcCCcccccCCC---eEE---EecHH----HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-----h
Q psy16848        314 DGQLHNMDIISGTLGKAFGNIG---GYI---VGTKN----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-----S  378 (514)
Q Consensus       314 ~~~~~~~di~~~S~sK~lg~~G---G~l---~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~  378 (514)
                      .+ ..+.+++++||||.+|.+|   ||+   +.+++    +++.+.......  ..+.+...+.++..+++...     .
T Consensus       244 ~~-~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (409)
T 4eu1_A          244 VD-MVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPM--YNNPPLYGAWVVSSILKDPQLTALWK  320 (409)
T ss_dssp             HT-TSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             Hh-hCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhh--cCCCChHHHHHHHHHhCCHHHHHHHH
Confidence            11 1245688999999999768   995   55667    555555443222  33556778877777776321     2


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEE
Q psy16848        379 QEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKI  454 (514)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~i  454 (514)
                      ..+++.+++++++++++.+.|++.|    +.+..+.++++.+ ++-   ..+++..+++++||.+.++           .
T Consensus       321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~---~~~~~~~ll~~~gv~v~p~-----------~  385 (409)
T 4eu1_A          321 KELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAY-TGL---TREQVELLRSEYHIYMTLN-----------G  385 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEE-CCC---CHHHHHHHHHHHCEECCTT-----------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEE-eCC---CHHHHHHHHHcCCEEEcCC-----------C
Confidence            3467788999999999999999986    5665566654433 221   1355677766789998752           3


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        455 RLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       455 Rl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      |++++ ..+++++++++++|++++
T Consensus       386 Ri~~~-~~~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          386 RAAVS-GLNSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred             EEEEE-ecCHhhHHHHHHHHHHHh
Confidence            88887 456778999999998875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.94  E-value=1.3e-25  Score=229.44  Aligned_cols=333  Identities=12%  Similarity=0.024  Sum_probs=215.6

Q ss_pred             CceeeecccCCCCC-------ChhHHHHHHH-HHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----CC--cEEEEe
Q psy16848         17 NRVTCRLSSVQYKV-------PKGGRKCLGE-ALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----KE--AGLVFT   82 (514)
Q Consensus        17 g~~~~d~~~~~~~~-------~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~--~~i~~~   82 (514)
                      ...++|+..+.|++       +|.+.+++.+ ++...+.  .++....|..++.+++++.+.+..+    .+  ..++++
T Consensus        25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~  102 (397)
T 3fsl_A           25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGA--SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTL  102 (397)
T ss_dssp             CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred             CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCcccc--ccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcC
Confidence            35689998775542       2688888888 7764221  1222233445555555555544333    23  456667


Q ss_pred             ccccccccchh--hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeecccccc
Q psy16848         83 SCYVANDSTLF--TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMT  160 (514)
Q Consensus        83 sGt~a~~~~l~--~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (514)
                      ||++++..++.  ++..  +||.|+++.+.|.+....++..|.+++.++..+.+                          
T Consensus       103 g~~~a~~~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------  154 (397)
T 3fsl_A          103 GGSGALKVGADFLKRYF--PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEA--------------------------  154 (397)
T ss_dssp             HHHHHHHHHHHHHHHHC--TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETT--------------------------
T ss_pred             CcHHHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeecc--------------------------
Confidence            77888887743  3444  99999999999999998888888887766541000                          


Q ss_pred             CCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEe
Q psy16848        161 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIY  240 (514)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v  240 (514)
                                                        +.                                            
T Consensus       155 ----------------------------------~~--------------------------------------------  156 (397)
T 3fsl_A          155 ----------------------------------TN--------------------------------------------  156 (397)
T ss_dssp             ----------------------------------TT--------------------------------------------
T ss_pred             ----------------------------------CC--------------------------------------------
Confidence                                              00                                            


Q ss_pred             cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCC
Q psy16848        241 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDG  315 (514)
Q Consensus       241 ~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~  315 (514)
                       .-|.+.+++.+++. .++++++++++++||||.+++   +++|.++|++||+++|+||+|+.+..+.  ...++.....
T Consensus       157 -~~d~~~l~~~l~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  234 (397)
T 3fsl_A          157 -GVRFNDLLATLKTL-QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS  234 (397)
T ss_dssp             -EECHHHHHHHHTTC-CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH
T ss_pred             -cCcHHHHHHHHHhC-CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh
Confidence             00455555555543 245789999999999999988   6799999999999999999998554431  1111111111


Q ss_pred             CccCceEEEcCCcccccCCC---eEEEe---cHHHHHHHHhhcCce-Ee-ccCCcHHHHHHHHHHHHHh-----hhchHH
Q psy16848        316 QLHNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRSYAAGF-IF-TTSLPPTVLAGAREAIRIL-----SSQEGV  382 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~~~~~~-~~-~~~~~~~~~~a~~~~l~~~-----~~~~~~  382 (514)
                       ..+.+++++|+||.+|.+|   ||++.   ++++++.+....... .. ....+...+.++...++..     ...+++
T Consensus       235 -~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  313 (397)
T 3fsl_A          235 -AGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVE  313 (397)
T ss_dssp             -TTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             -cCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence             2357899999999999767   98864   455555433221100 00 1133555555555555421     134567


Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        383 ELRAKHQDIVAYLRNELIQI----GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      +.+++++++++++.+.|++.    ++.+..+.++ ++++.++    ...+.+.+ +++||.+.++.           |++
T Consensus       314 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gi~v~~g~-----------Ris  377 (397)
T 3fsl_A          314 EMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLR-EEFGVYLIASG-----------RMC  377 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----HHHHHHHH-HTTCEECCTTC-----------EEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC----HHHHHHHH-HhCCEEECCCC-----------eEE
Confidence            88899999999999999987    5766655544 4444442    34454555 69999997542           899


Q ss_pred             eCCCCCHHHHHHHHHHHHHH
Q psy16848        458 PTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~  477 (514)
                      ++ ..+++++++++++|+++
T Consensus       378 ~~-~~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          378 VA-GLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             GG-GCCTTTHHHHHHHHHHH
T ss_pred             EE-ecCHhhHHHHHHHHHhh
Confidence            97 44678899999999875

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.94  E-value=5.1e-26  Score=232.17  Aligned_cols=330  Identities=15%  Similarity=0.077  Sum_probs=220.2

Q ss_pred             CCceeeecccCCCC-------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc-CC----CcEEE--E
Q psy16848         16 SNRVTCRLSSVQYK-------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH-QK----EAGLV--F   81 (514)
Q Consensus        16 ~g~~~~d~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~----~~~i~--~   81 (514)
                      .+..++||..+.|+       .+|.+.+++.++++. + ...++    +......++++.+++++ +.    ++.++  +
T Consensus        24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~y----~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~   97 (394)
T 2ay1_A           24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-E-TTKTY----AGLSGEPEFQKAMGELILGDGLKSETTATLAT   97 (394)
T ss_dssp             CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-C-CCCCC----CCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEE
T ss_pred             CCccccccccceeeCCCCCccCcHHHHHHHHHhcCC-c-ccCCC----CCCCCcHHHHHHHHHHHhCCCCCcccEEEEec
Confidence            45678999888763       258899999888765 1 11111    11222356667777765 32    45666  7


Q ss_pred             eccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         82 TSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        82 ~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +||++|+..++..+....+||.|+++.++|.+....++..|.+++.++....+                           
T Consensus        98 ~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~---------------------------  150 (394)
T 2ay1_A           98 VGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAE---------------------------  150 (394)
T ss_dssp             EHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETT---------------------------
T ss_pred             CCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEeccccc---------------------------
Confidence            88899998888766433489999999999999988887777776655431000                           


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                       +.                                             
T Consensus       151 ---------------------------------~~---------------------------------------------  152 (394)
T 2ay1_A          151 ---------------------------------TR---------------------------------------------  152 (394)
T ss_dssp             ---------------------------------TT---------------------------------------------
T ss_pred             ---------------------------------CC---------------------------------------------
Confidence                                             00                                             


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC--CCCCccccCCC
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE--HGAGIGERDGQ  316 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~--~~~~~~~~~~~  316 (514)
                      ..|.+.+++.+++. .++++++++++++||||.+++   +++|.++|++||+++|+||+|+.+..+.  ...++..... 
T Consensus       153 ~~d~~~l~~~l~~~-~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-  230 (394)
T 2ay1_A          153 GVDFEGMKADLAAA-KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS-  230 (394)
T ss_dssp             EECHHHHHHHHHTC-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH-
T ss_pred             ccCHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh-
Confidence            00455566666543 234678889999999999998   6789999999999999999999433221  0001111111 


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEe---cHHHHHHHHh----hcCceEeccCCcHHHHHHHHHHHHHh-----hhchH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRS----YAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEG  381 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~----~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~  381 (514)
                      ..+.+++++|+||.+|.+|   ||+++   ++++++.+..    .....  ....++..++++.++++..     ..++.
T Consensus       231 ~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~  308 (394)
T 2ay1_A          231 RIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQT--YSFPPFHGAKIVSTVLTTPELRADWMAEL  308 (394)
T ss_dssp             HCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCCHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             cCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhh--cCCCChHHHHHHHHHhcChHHHHHHHHHH
Confidence            1234688999999999667   99987   6665443322    11111  1134677777777777633     12456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC----CccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEE
Q psy16848        382 VELRAKHQDIVAYLRNELIQIG----FPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL  456 (514)
Q Consensus       382 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl  456 (514)
                      ++++++++++++++.+.|++.+    +.+..+. +.++++.++    ...+.+.+ +++||.+.+           .+|+
T Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l-~~~gi~v~~-----------~~Ri  372 (394)
T 2ay1_A          309 EAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----PEQVKRIK-EEFGIYMVG-----------DSRI  372 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----HHHHHHHH-HHHCEECCT-----------TCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----HHHHHHHH-HhCCEEecC-----------CCeE
Confidence            7788999999999999998874    6655555 445555443    24454555 589999874           2699


Q ss_pred             EeCCCCCHHHHHHHHHHHHHH
Q psy16848        457 APTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +++ .++++++++++++|+++
T Consensus       373 s~~-~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          373 NIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             EGG-GCCTTTHHHHHHHHHHH
T ss_pred             Eee-cCCHhhHHHHHHHHHHc
Confidence            998 57899999999999875

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.94  E-value=5.4e-25  Score=228.62  Aligned_cols=336  Identities=20%  Similarity=0.249  Sum_probs=226.2

Q ss_pred             eeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcchHH--HHHH-HHHHhHcCCCcEEE-Eeccccccccchh
Q psy16848         20 TCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNSLFH--EKLE-EDVAKLHQKEAGLV-FTSCYVANDSTLF   93 (514)
Q Consensus        20 ~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~la~~~~~~~~i~-~~sGt~a~~~~l~   93 (514)
                      .+++ .+.++. +|++.+++.+++. .|+.+++++++..|.....  ++++ +++++++|.+...+ ++||++|+..++.
T Consensus        47 ~i~l~~~~~~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~  125 (447)
T 3h7f_A           47 TLEMIASENFV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLH  125 (447)
T ss_dssp             SEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred             ceeEecCCCCC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHH
Confidence            4555 344454 8999999998885 5544444444444443332  4555 89999999988777 8999999999998


Q ss_pred             hccccCCCceEEecCccchhhh-hhh--hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMI-QGI--RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~-~~~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ++.+  +||+|++..++|.+.. .+.  ...|..                                              
T Consensus       126 ~~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------------------------------------------  157 (447)
T 3h7f_A          126 ALMS--PGERLLGLDLANGGHLTHGMRLNFSGKL----------------------------------------------  157 (447)
T ss_dssp             HHCC--TTCEEEEECGGGTCCGGGTCTTSHHHHS----------------------------------------------
T ss_pred             HhcC--CCCEEEecCcccccccchhhhhhhcCCe----------------------------------------------
Confidence            8876  9999999999987732 211  111110                                              


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCC
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HND  244 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d  244 (514)
                                                                                      .++++++      ..|
T Consensus       158 ----------------------------------------------------------------~~~~~~~~~~~~~~~d  173 (447)
T 3h7f_A          158 ----------------------------------------------------------------YENGFYGVDPATHLID  173 (447)
T ss_dssp             ----------------------------------------------------------------SEEEEECCCTTTCSCC
T ss_pred             ----------------------------------------------------------------eEEEEcCcCcccCCcC
Confidence                                                                            0111111      126


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+++.+++.   +++++++++++||++.  ++++|+++|++||+++|+||+|..|.... +  .  ........|+++
T Consensus       174 ~~~l~~~i~~~---~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~-g--~--~~~~~~~~di~~  243 (447)
T 3h7f_A          174 MDAVRATALEF---RPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAA-G--L--HPSPVPHADVVS  243 (447)
T ss_dssp             HHHHHHHHHHH---CCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHT-T--S--SCCSTTTCSEEE
T ss_pred             HHHHHHHHHhc---CCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcC-C--C--CCCCCCCCcEEE
Confidence            67777777542   3678888888888776  89999999999999999999987553211 1  0  011112568999


Q ss_pred             cCCccccc-CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        325 GTLGKAFG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       325 ~S~sK~lg-~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      +|+||+++ +.||++++++++.+.+......+.++ +.+...++++..++.....+++++.++++.++++++.+.|++. 
T Consensus       244 ~s~sK~l~G~~gG~i~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  322 (447)
T 3h7f_A          244 TTVHKTLGGGRSGLIVGKQQYAKAINSAVFPGQQG-GPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPD  322 (447)
T ss_dssp             EESSGGGCCCSCEEEEECGGGHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred             ecCCcCCCCCCeEEEEECHHHHHHHhhhcCCcccC-CccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999996 45699999999888887654443222 2334445555566665544466788999999999999999887 


Q ss_pred             ----CCcccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEe----cccCCCCCCCCcEEEEEeCCC----CCHHHH
Q psy16848        403 ----GFPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQ----PINYPTVPVGEEKIRLAPTPF----HTREMI  467 (514)
Q Consensus       403 ----g~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~----~~~~~~~~~~~~~iRl~~~~~----~t~e~i  467 (514)
                          |+++..  +.++++++.+... .....+.+.| +++||.+.    ++.. ..+...+.+|++++..    .+++|+
T Consensus       323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~GI~v~~~~i~~~~-~~p~~~~~lRig~~~~~~~~~~~eei  400 (447)
T 3h7f_A          323 VAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLL-HEVGITVNRNAVPNDP-RPPMVTSGLRIGTPALATRGFGDTEF  400 (447)
T ss_dssp             HHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHH-HHTTEECBC--------------CEEEEECHHHHHHTCCHHHH
T ss_pred             ccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHH-HHCCeEEecccCCCCC-CCCCCCCceeccCHHHhhCCCCHHHH
Confidence                887754  3556777776543 2344555555 68899998    4421 1123356899987542    679999


Q ss_pred             HHHHHHHHHHHHHc
Q psy16848        468 DKFVTDLLAVWKSL  481 (514)
Q Consensus       468 d~~~~~l~~~l~~~  481 (514)
                      ++++++|++++.+.
T Consensus       401 ~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          401 TEVADIIATALATG  414 (447)
T ss_dssp             HHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998765

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.93  E-value=4.2e-25  Score=229.74  Aligned_cols=336  Identities=16%  Similarity=0.149  Sum_probs=214.8

Q ss_pred             ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcc---hHHHHHHHHHHhHcCCCc----E-EEEeccccccccchhh
Q psy16848         24 SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNS---LFHEKLEEDVAKLHQKEA----G-LVFTSCYVANDSTLFT   94 (514)
Q Consensus        24 ~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~----~-i~~~sGt~a~~~~l~~   94 (514)
                      +|.+| .+|+|.+++.+.+. +|+.+++++++..|..   .+.+.+++++++++|.+.    + ++++|||+||..++.+
T Consensus        61 as~n~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a  139 (490)
T 2a7v_A           61 ASENF-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA  139 (490)
T ss_dssp             TTCCC-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCC-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence            56666 47999999988874 5666666666666542   333344599999999886    4 4456999999999999


Q ss_pred             ccccCCCceEEecCccchhhhh--------hhhcCCCC--eeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQ--------GIRNSSAP--KIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~--------~~~~~~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      +.+  |||+|+++.+.|.+.+.        .+...|..  ++.++.+                                 
T Consensus       140 l~~--pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd---------------------------------  184 (490)
T 2a7v_A          140 LLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN---------------------------------  184 (490)
T ss_dssp             HCC--SCEECCC-------------------------------CCBC---------------------------------
T ss_pred             HcC--CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc---------------------------------
Confidence            976  99999999998876432        11122211  1111000                                 


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                         +          ..|                                            ..|
T Consensus       185 -------------------~----------~~~--------------------------------------------~iD  191 (490)
T 2a7v_A          185 -------------------P----------KTG--------------------------------------------LID  191 (490)
T ss_dssp             -------------------T----------TTC--------------------------------------------SBC
T ss_pred             -------------------c----------ccC--------------------------------------------CcC
Confidence                               0          000                                            126


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+++.+.+.   ++++|+++.++||  ...|+++|.++|++||+++++|++|..|...... ...+.    ...|+++
T Consensus       192 ~d~le~~l~~~---~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~-~~~~~----~~aDiv~  261 (490)
T 2a7v_A          192 YNQLALTARLF---RPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKV-IPSPF----KHADIVT  261 (490)
T ss_dssp             HHHHHHHHHHH---CCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTS-SCCGG----GTCSEEE
T ss_pred             HHHHHHHHhhc---CCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCc-CCCCC----CCCCEEE
Confidence            77777777643   3678888777765  4678999999999999999999999866432110 00111    2579999


Q ss_pred             cCCcccc-cCCCeEEEecHH---------------HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        325 GTLGKAF-GNIGGYIVGTKN---------------FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       325 ~S~sK~l-g~~GG~l~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      +|+||++ |+.||+++++++               +.+.++....... ..+.+...+++...++.....+..++..+++
T Consensus       262 ~S~hK~l~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~-qggp~~~~iaAla~Al~~~~~~~~~~~~~~~  340 (490)
T 2a7v_A          262 TTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-QGGPHNHAIAAVAVALKQACTPMFREYSLQV  340 (490)
T ss_dssp             EESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ECCcccCccccchheeeccchhcccccccchhhHHHHHHHHHHhcccC-CCCchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999 556799988763               5566654433321 1234455556666666655444557788999


Q ss_pred             HHHHHHHHHHHHhCCCcccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEe----C
Q psy16848        389 QDIVAYLRNELIQIGFPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAP----T  459 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~----~  459 (514)
                      .++++++.+.|.+.|+.+..  ...+++++.+... .+..++.+.| ++.||.+.....|..  +.....+|++.    +
T Consensus       341 ~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L-~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~  419 (490)
T 2a7v_A          341 LKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTS  419 (490)
T ss_dssp             HHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred             HHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHH-HhCCeEEecCccCCCCCCCCCCceEeccccccc
Confidence            99999999999999988764  3456778887643 3566777777 589999986544332  22357899965    3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..++++|++++++.|.+++..
T Consensus       420 ~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          420 RQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            467899999999999998864

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.93  E-value=6.9e-25  Score=226.10  Aligned_cols=342  Identities=13%  Similarity=0.053  Sum_probs=228.3

Q ss_pred             eeeecccCCCC-----CChhHHHHHH--HHHHHhCCCCCCcCccc-CcchHHHHHHHHHHhHcCCC-cEEEEec-ccccc
Q psy16848         19 VTCRLSSVQYK-----VPKGGRKCLG--EALEKFGTGAGGTRNIS-GNSLFHEKLEEDVAKLHQKE-AGLVFTS-CYVAN   88 (514)
Q Consensus        19 ~~~d~~~~~~~-----~~~~~~~a~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-~~i~~~s-Gt~a~   88 (514)
                      ..+||.....-     .+|.+.+++.  +.++ .+.    ....| +......++++.++++++.+ ..+++++ +++++
T Consensus        26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~----~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al  100 (423)
T 3ez1_A           26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGL----DLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLEL  100 (423)
T ss_dssp             CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTE----ETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHH
T ss_pred             ceEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cch----hhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHH
Confidence            46888654443     2456777664  3322 111    11223 33344578999999998854 3455555 45566


Q ss_pred             c--cchhhccccCC---------CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848         89 D--STLFTLGKMIP---------GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  157 (514)
Q Consensus        89 ~--~~l~~l~~~~~---------gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~  157 (514)
                      .  .++.++....+         ||.|+++.++|......++..|.+++.++..+                         
T Consensus       101 ~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-------------------------  155 (423)
T 3ez1_A          101 QGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQS-------------------------  155 (423)
T ss_dssp             HHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-------------------------
T ss_pred             HHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCC-------------------------
Confidence            5  66666643114         69999999999998888877777766554310                         


Q ss_pred             cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848        158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK  237 (514)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~  237 (514)
                                                            .                                         
T Consensus       156 --------------------------------------~-----------------------------------------  156 (423)
T 3ez1_A          156 --------------------------------------D-----------------------------------------  156 (423)
T ss_dssp             --------------------------------------T-----------------------------------------
T ss_pred             --------------------------------------C-----------------------------------------
Confidence                                                  0                                         


Q ss_pred             EEecCCChhHHHHHHhhccCCCceEEEE-ecCCCCCccccCH---HHHHHHH-HHcCCEEEEeccccccccCC-CCCCcc
Q psy16848        238 IIYRHNDVNHLTQVLENMDVKIPKLVAF-ETVHSMTGAICPL---KELCEVS-HQHGALTFVDEVHAVGLYGE-HGAGIG  311 (514)
Q Consensus       238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~-~~~~nptG~~~~l---~~l~~l~-~~~gv~li~Dea~~~g~~g~-~~~~~~  311 (514)
                          ..|.+.+++.+++  .+++++|++ ++++||||.+++.   ++|.++| ++||+++|+||+|+...+.. .+....
T Consensus       157 ----g~d~~~l~~~l~~--~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~  230 (423)
T 3ez1_A          157 ----GPDVDAVERLAGT--DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPV  230 (423)
T ss_dssp             ----EECHHHHHHHHHS--CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCC
T ss_pred             ----CCCHHHHHHHHhh--CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCc
Confidence                0145556665542  345788864 5899999999995   5888888 89999999999999433322 111111


Q ss_pred             ccCCC-----ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-h--hch
Q psy16848        312 ERDGQ-----LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-S--SQE  380 (514)
Q Consensus       312 ~~~~~-----~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~--~~~  380 (514)
                      +....     ..+.+++++||||.+++ |   ||+++++++++.+.......  +.+.+...+.++...++.+ .  ...
T Consensus       231 ~~~~~~~~~~~~~~~i~~~S~sK~~~~-G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~  307 (423)
T 3ez1_A          231 NFVVLARDAGYPDRAFVFASTSKITFA-GAGLGFVASSEDNIRWLSKYLGAQ--SIGPNKVEQARHVKFLTEYPGGLEGL  307 (423)
T ss_dssp             CHHHHHHHHTCTTSEEEEEESTTTSCS-SSSCEEEEECHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHHHHSTTHHHHH
T ss_pred             chhhhhhccCCCCeEEEEeCchhhccC-CcceEEEEeCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHHhccchHHHH
Confidence            11110     23678999999998433 5   99999999999887765444  3467888888888887751 1  244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh----CC--CccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEec-ccCCCC--CCC
Q psy16848        381 GVELRAKHQDIVAYLRNELIQ----IG--FPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQP-INYPTV--PVG  450 (514)
Q Consensus       381 ~~~~~~~~~~~~~~l~~~L~~----~g--~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~-~~~~~~--~~~  450 (514)
                      +.+.++.++++++.+.+.|.+    .+  +.+..+ .+.++++.++.. +..++.+.| +++||.+.+ +.++..  ...
T Consensus       308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~l-~~~gv~v~~~g~~~~~~~~~~  385 (423)
T 3ez1_A          308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-VADRVVKLA-EAAGVSLTPAGATYPAGQDPH  385 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-CHHHHHHHH-HHTTEECCCTTTTSSTTCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-cHHHHHHHH-HHCCcEEecCcccccCCCCCC
Confidence            556667777777777766655    44  444444 345778888764 567777777 599999998 554432  235


Q ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+++|++++.. +++++++++++|+++++++
T Consensus       386 ~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          386 NRNLRLAPTRP-PVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             SCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence            78999999744 9999999999999998765

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=2.4e-24  Score=219.44  Aligned_cols=286  Identities=11%  Similarity=0.114  Sum_probs=205.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...+++++++++++.++.++++||++|+..++.++..  +||.|+++.+.|.++...++                   
T Consensus        51 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~-------------------  109 (386)
T 1cs1_A           51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFD-------------------  109 (386)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHH-------------------
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcHhHHHHHH-------------------
Confidence            467789999999999988889999999999999988865  99999999999988664321                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (386)
T 1cs1_A          110 --------------------------------------------------------------------------------  109 (386)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.+++.++.+|.+.+++.+++    ++++|++++++||+|.++++++|.++|++||+++|+||+|
T Consensus       110 ---------~~~~~~g~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~  176 (386)
T 1cs1_A          110 ---------SLAKRGCYRVLFVDQGDEQALRAALAE----KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF  176 (386)
T ss_dssp             ---------HHHTTTSCEEEEECTTCHHHHHHHHHT----CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             ---------HHHHhcCCEEEEeCCCCHHHHHHhhcc----CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence                     011122444555555566666666652    4789999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+....      ..   ..++|++++|+||+++++|    |++++++ ++++.+......+  +...++..++++...+
T Consensus       177 ~~~~~~~------~~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~l  245 (386)
T 1cs1_A          177 LSPALQN------PL---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--GVTGGAFDSYLLLRGL  245 (386)
T ss_dssp             TCTTTCC------GG---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--TCBCCHHHHHHHHHHH
T ss_pred             cccccCC------cc---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhcc
Confidence            9554311      11   2368999999999997533    8888875 7888887655443  3356777766666655


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhCC-Cc-----cc-------------cCCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQIG-FP-----VE-------------HTPSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-----~~-------------~~~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +.     +.+..++..++.+.+.+.|+++. +.     -.             ...++++.+.+++.  ..++.+.| ++
T Consensus       246 ~~-----~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l-~~  317 (386)
T 1cs1_A          246 RT-----LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD--EQTLRRFL-GG  317 (386)
T ss_dssp             TT-----HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--HHHHHHHH-HT
T ss_pred             cH-----HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--HHHHHHHH-Hh
Confidence            42     33456667777778888777652 11     00             12367888888653  55676777 58


Q ss_pred             CCeEEecccC---------CC------CC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        435 KGHYVQPINY---------PT------VP--------VGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       435 ~GI~v~~~~~---------~~------~~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +||.++...+         |.      .+        ..++++|++++..+++++++.+.++|+++
T Consensus       318 ~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          318 LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             CSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            9998874221         10      01        12579999999888888888888877764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.93  E-value=1.4e-25  Score=226.29  Aligned_cols=327  Identities=8%  Similarity=0.016  Sum_probs=221.5

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCc-----CcccCcchHHHHHHHHHHhHcCCC---cEEEE-eccccccc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGT-----RNISGNSLFHEKLEEDVAKLHQKE---AGLVF-TSCYVAND   89 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~---~~i~~-~sGt~a~~   89 (514)
                      .+.|..+ .+..+|++.+++.+.+..++. .+++     ....+..+..+++++++++++|.+   +.+++ +|||+++.
T Consensus         5 ~~l~~~~-~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~   82 (362)
T 2c0r_A            5 AYNFNAG-PAALPLEVLERAQAEFVDYQH-TGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA   82 (362)
T ss_dssp             CEECCSS-SCCCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred             eeeccCC-CCCCCHHHHHHHHHHHhhhhh-cCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence            3444433 345588999999988865422 1111     111123456789999999999976   44555 57788999


Q ss_pred             cchhhccccCCCceEEecCccchhh--hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASM--IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      .++.++..  |||+|++..+.|.+.  ...++..| +++.++... +                                 
T Consensus        83 ~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~-~---------------------------------  125 (362)
T 2c0r_A           83 MIPMNFLK--EGQTANYVMTGSWASKALKEAKLIG-DTHVAASSE-A---------------------------------  125 (362)
T ss_dssp             HHHHHHCC--TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECG-G---------------------------------
T ss_pred             HHHHhcCC--CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEeccc-c---------------------------------
Confidence            99988866  999998765554442  23333344 443322100 0                                 


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                .+.+.                                           ..+.+.
T Consensus       126 --------------------------~~~~~-------------------------------------------~~~~~~  136 (362)
T 2c0r_A          126 --------------------------SNYMT-------------------------------------------LPKLQE  136 (362)
T ss_dssp             --------------------------GTTCS-------------------------------------------CCCGGG
T ss_pred             --------------------------ccccc-------------------------------------------CCCHHH
Confidence                                      00000                                           001111


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      +    .  .++++++|++++++||||.. .++++|      +|+++|+|++|+++..        +. .+ .+.|++++|
T Consensus       137 ~----~--i~~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~--------~~-~~-~~~d~~~~s  194 (362)
T 2c0r_A          137 I----Q--LQDNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR--------PF-DL-NQFGLVYAG  194 (362)
T ss_dssp             C----C--CCTTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSS--------CC-CG-GGCSEEEEE
T ss_pred             c----c--cCCCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCC--------cc-ch-hHCcEEEEe
Confidence            1    1  24578999999999999996 557766      8999999999996642        11 11 124899999


Q ss_pred             CcccccCCC-eEEEecHHHHHHHHhhcCc----------eEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHH
Q psy16848        327 LGKAFGNIG-GYIVGTKNFIDTIRSYAAG----------FIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAY  394 (514)
Q Consensus       327 ~sK~lg~~G-G~l~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~  394 (514)
                      +||++|+.| ||+++++++++.+......          .....+.+...+.++.++++.+.+. +++++++++++++++
T Consensus       195 ~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~  274 (362)
T 2c0r_A          195 AQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASL  274 (362)
T ss_dssp             TTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999999888 9999998887665431100          0012356777888889999876554 678899999999999


Q ss_pred             HHHHHHhCC-C-ccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848        395 LRNELIQIG-F-PVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       395 l~~~L~~~g-~-~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id  468 (514)
                      +.+.|++++ + ++..+    ...++++.+++..+..++++.| +++||.+.++..+     .+.+|++++..++++|++
T Consensus       275 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~-----~~~iRis~~~~~~~e~i~  348 (362)
T 2c0r_A          275 IYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRS-----VGGLRASIYNAVPYESCE  348 (362)
T ss_dssp             HHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTT-----TCSEEEECCTTSCHHHHH
T ss_pred             HHHHHHHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCC-----CCEEEEECCCCCCHHHHH
Confidence            999999986 6 55321    2346777777545677899998 4899988765432     247999999888999999


Q ss_pred             HHHHHHHHHHHHc
Q psy16848        469 KFVTDLLAVWKSL  481 (514)
Q Consensus       469 ~~~~~l~~~l~~~  481 (514)
                      ++++.|++++++.
T Consensus       349 ~l~~~l~~~~~~~  361 (362)
T 2c0r_A          349 ALVQFMEHFKRSR  361 (362)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987653

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.93  E-value=1e-25  Score=226.99  Aligned_cols=313  Identities=13%  Similarity=0.100  Sum_probs=210.4

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCce--EEecC
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLH--YISDA  108 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~--v~~~~  108 (514)
                      +|++.+++.+.+.         ...++..+...++++++++++|.+..++++||++|+..++.++..  +||.  |++++
T Consensus        28 ~p~v~~ai~~~~~---------~~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~--~g~~~vvi~~~   96 (359)
T 3pj0_A           28 LTEALQNIDDNLE---------SDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD--RKENRRVAYHP   96 (359)
T ss_dssp             HHHHTTTSCTTCB---------CCBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH--HHTCCEEEECT
T ss_pred             CHHHHHHHHhhcc---------cCcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh--cCCCcEEEEec
Confidence            5777777666211         122345678899999999999999889899999999999988876  7776  77777


Q ss_pred             ccchhhhhh--h-hcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848        109 GNHASMIQG--I-RNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  185 (514)
Q Consensus       109 ~~h~~~~~~--~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (514)
                      +.|......  + ...                                                                
T Consensus        97 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  112 (359)
T 3pj0_A           97 LSHLEIHEQDGLKELQ----------------------------------------------------------------  112 (359)
T ss_dssp             TCHHHHSSTTHHHHHH----------------------------------------------------------------
T ss_pred             cceeeehhcchHHHhc----------------------------------------------------------------
Confidence            777665421  1 122                                                                


Q ss_pred             ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEE
Q psy16848        186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF  265 (514)
Q Consensus       186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~  265 (514)
                                                                      |++++.++.++...+.+.+++. .+++++|++
T Consensus       113 ------------------------------------------------g~~~~~v~~~~~~~d~~~l~~~-~~~~~~v~~  143 (359)
T 3pj0_A          113 ------------------------------------------------QITPLLLGTANQLLTIDDIKSL-REPVSSVLI  143 (359)
T ss_dssp             ------------------------------------------------CCEEEECSCTTSCCCHHHHHTC-SSCCSEEEE
T ss_pred             ------------------------------------------------CceEEecCCcCCCcCHHHHHhc-cCCceEEEE
Confidence                                                            3334444432222233344444 567899999


Q ss_pred             ecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC-CeEEEe
Q psy16848        266 ETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-GGYIVG  340 (514)
Q Consensus       266 ~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-GG~l~~  340 (514)
                      ++++||+ |.+++   +++|.++|++||+++|+|++|..+.....+....+.   ....|+++.|+||+++++ ||++++
T Consensus       144 ~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~sK~~~~~~gg~~~~  220 (359)
T 3pj0_A          144 ELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEI---CALFDSVYVSFYKGIGGIAGAILAG  220 (359)
T ss_dssp             ESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHH---HTTCSEEEEESSSTTCCSSCEEEEE
T ss_pred             EecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHh---hccCCEEEEeccccCCCcceEEEEC
Confidence            9999998 78888   455599999999999999998754321111111111   125688888999998654 478889


Q ss_pred             cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--cCCCcEEEEE
Q psy16848        341 TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE--HTPSHIIPIK  417 (514)
Q Consensus       341 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~i~  417 (514)
                      ++++++.+......+..+.......++++..+++...     +..+++.++++++.+.|+++ |+.+.  ++.++++++.
T Consensus       221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~  295 (359)
T 3pj0_A          221 NDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVY  295 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEE
Confidence            9999988875432221122233333444445555331     23445678888999999998 77763  3556677777


Q ss_pred             eCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC---CCHHHHHHHHHHHHHH
Q psy16848        418 IGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF---HTREMIDKFVTDLLAV  477 (514)
Q Consensus       418 l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~---~t~e~id~~~~~l~~~  477 (514)
                      ++..  .+..++.+.|. ++||.+.++..+.. .+..++|+++...   .+.+++++++++|++.
T Consensus       296 ~~~~~~~~~~~l~~~l~-~~GV~v~~g~~~~~-~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          296 FENSADEIGAILTKIQD-ETGVGISGYLQEKS-ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             ESSCHHHHHHHHHHHHH-HHCEECCSCCEEEE-TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             ecCccchhHHHHHHHHH-hcCcEecCCccccC-CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            7643  23567888884 89999999875443 3467899988643   5788888888888764

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.93  E-value=1.6e-24  Score=220.84  Aligned_cols=323  Identities=17%  Similarity=0.122  Sum_probs=229.0

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GK   97 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~   97 (514)
                      .+|+|...+ + ++++.+++.+++.....         ...+...++++.++++++.+++++++||++|+..++.++ ..
T Consensus         9 ~~i~~~~p~-~-~~~~~~a~~~~~~~~~~---------~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~   77 (393)
T 1mdo_A            9 DFLPFSRPA-M-GAEELAAVKTVLDSGWI---------TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIG   77 (393)
T ss_dssp             CCBCSCCCC-C-CHHHHHHHHHHHHHTCC---------SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC
T ss_pred             cccccCCCC-C-CHHHHHHHHHHHhcCCc---------CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCC
Confidence            357776533 2 47888999998876311         123678899999999999998999999999999999888 55


Q ss_pred             cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848         98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  177 (514)
Q Consensus        98 ~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
                        +||.|+++.++|.+...+++..|.+++.++.+. +                                           
T Consensus        78 --~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------------------------------------  111 (393)
T 1mdo_A           78 --EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-D-------------------------------------------  111 (393)
T ss_dssp             --TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-T-------------------------------------------
T ss_pred             --CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-C-------------------------------------------
Confidence              999999999999999888877777766544210 0                                           


Q ss_pred             ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848        178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  257 (514)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~  257 (514)
                                       +.                                             ..|.+.+++.++    
T Consensus       112 -----------------~~---------------------------------------------~~d~~~l~~~l~----  125 (393)
T 1mdo_A          112 -----------------TL---------------------------------------------MVTPEHIEAAIT----  125 (393)
T ss_dssp             -----------------TC---------------------------------------------CBCHHHHHHHCC----
T ss_pred             -----------------cC---------------------------------------------CCCHHHHHHhcC----
Confidence                             00                                             013444444443    


Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-C
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-I  334 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~  334 (514)
                      +++++|+++   ||+|.+.++++|.++|+++|+++|+|++|+.|... .+    ...+  . .|++++|+|  |++++ .
T Consensus       126 ~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~~--~-~d~~~~S~~k~K~l~~~~  194 (393)
T 1mdo_A          126 PQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSY-KG----RHIG--A-RGTAIFSFHAIKNITCAE  194 (393)
T ss_dssp             TTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TT----EETT--S-SSEEEEECCTTSSSCSSS
T ss_pred             CCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeE-CC----eecC--C-CCeEEEeCCCCCcccccc
Confidence            357888765   47999999999999999999999999999965421 11    1111  1 799999999  88865 3


Q ss_pred             CeEEEec-HHHHHHHHhhcCce---------------Ee-------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        335 GGYIVGT-KNFIDTIRSYAAGF---------------IF-------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       335 GG~l~~~-~~~~~~l~~~~~~~---------------~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      ||+++.+ +++++.+.......               .+       +..+++..++++...++.     +++..++.+++
T Consensus       195 ~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~  269 (393)
T 1mdo_A          195 GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQK-----LDALNARRAAI  269 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHH
T ss_pred             ceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            4888886 78888776543211               10       023456655555555442     34567777788


Q ss_pred             HHHHHHHHHhCCCcccc-------CCCcEEEEEeCC---CccHHHHHHHHHHhCCeEEecccCCC--------------C
Q psy16848        392 VAYLRNELIQIGFPVEH-------TPSHIIPIKIGN---PALNTKICDMLLKEKGHYVQPINYPT--------------V  447 (514)
Q Consensus       392 ~~~l~~~L~~~g~~~~~-------~~~~~~~i~l~~---~~~~~~~~~~Ll~~~GI~v~~~~~~~--------------~  447 (514)
                      .+++.+.|.+.++.+..       ..+.++++.+++   ..+..++.+.|. ++||.++++..|.              .
T Consensus       270 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~  348 (393)
T 1mdo_A          270 AAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTL  348 (393)
T ss_dssp             HHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCC
T ss_pred             HHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHH-hCCCCcccccCccccChhhhccCCccCC
Confidence            99999999887755431       123467888873   345788999995 8999998876541              1


Q ss_pred             CC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        448 PV----GEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       448 ~~----~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.    ..+.+|++++..+|++|+++++++|+++++..
T Consensus       349 ~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          349 PDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             HHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             hhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            11    13589999998899999999999999987654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.93  E-value=9.4e-25  Score=222.38  Aligned_cols=315  Identities=17%  Similarity=0.106  Sum_probs=220.2

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~  109 (514)
                      .|++.+++.++++. +. .     .+...+...++++.+++++|.++.++++|||+|+..++.++ ..  +||+|+++.+
T Consensus        16 ~~~~~~a~~~~l~~-~~-~-----~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~--~gd~Vi~~~~   86 (388)
T 1b9h_A           16 DDAERNGLVRALEQ-GQ-W-----WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVG--PGTEVIVPAF   86 (388)
T ss_dssp             CHHHHHHHHHHHHT-SC-C-----BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHHc-CC-e-----eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            47899999998876 21 1     12234668899999999999998999999999999999888 55  9999999999


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +|.+...+++..|.+++.++.+. +                                                       
T Consensus        87 ~~~~~~~~~~~~g~~~~~v~~~~-~-------------------------------------------------------  110 (388)
T 1b9h_A           87 TFISSSQAAQRLGAVTVPVDVDA-A-------------------------------------------------------  110 (388)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------------------
T ss_pred             ccHHHHHHHHHcCCEEEEEecCC-C-------------------------------------------------------
Confidence            99999988877777766554310 0                                                       


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                           +.                                             ..|.+.+++.+    ++++++|+   ++
T Consensus       111 -----~~---------------------------------------------~~d~~~l~~~i----~~~~~~v~---~~  133 (388)
T 1b9h_A          111 -----TY---------------------------------------------NLDPEAVAAAV----TPRTKVIM---PV  133 (388)
T ss_dssp             -----TC---------------------------------------------CBCHHHHHHHC----CTTEEEEC---CB
T ss_pred             -----cC---------------------------------------------CCCHHHHHHhc----CcCceEEE---Ee
Confidence                 00                                             00344444444    34577777   78


Q ss_pred             CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEecHH-H-
Q psy16848        270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGTKN-F-  344 (514)
Q Consensus       270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~~~-~-  344 (514)
                      ||+|.+.++++|.++|++||+++|+|++|+.|... .+..+   ...  + |+.++|||  |++++ .||+++++++ + 
T Consensus       134 n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~-~~~~~---~~~--~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~  206 (388)
T 1b9h_A          134 HMAGLMADMDALAKISADTGVPLLQDAAHAHGARW-QGKRV---GEL--D-SIATFSFQNGKLMTAGEGGAVVFPDGETE  206 (388)
T ss_dssp             CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEEG---GGS--S-SCEEEECCTTSSSCSSSCEEEEECTTCHH
T ss_pred             CCccCcCCHHHHHHHHHHcCCEEEEecchhcCCcc-CCeec---ccc--c-ceEEEEccCCCcccCCCeEEEEECCHHHH
Confidence            99999999999999999999999999999965431 11111   111  2 45555665  77744 4499888875 5 


Q ss_pred             -HHHHHhhcCc--------e-----EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc-
Q psy16848        345 -IDTIRSYAAG--------F-----IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH-  408 (514)
Q Consensus       345 -~~~l~~~~~~--------~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-  408 (514)
                       ++.+......        +     +.+..+++..++++...++     .+++.+++++++++++.+.|+++ ++.+.. 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  281 (388)
T 1b9h_A          207 KYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGG  281 (388)
T ss_dssp             HHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCC
T ss_pred             HHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCC
Confidence             5655432210        0     1122355555555444333     34557788888999999999987 776553 


Q ss_pred             -----CC-CcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCC----------CC----------------CCcEE
Q psy16848        409 -----TP-SHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTV----------PV----------------GEEKI  454 (514)
Q Consensus       409 -----~~-~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~----------~~----------------~~~~i  454 (514)
                           +. +.++++.++..  .+..++.+.|. ++||.++++..+..          +.                ..+.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  360 (388)
T 1b9h_A          282 DVRADRNSHYMAMFRIPGLTEERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCV  360 (388)
T ss_dssp             CTTCCBCCCSEEEEECTTCCHHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEE
T ss_pred             CcCCCccceEEEEEEeCCcCcccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeE
Confidence                 22 45788888753  25678999995 89999987654210          00                02479


Q ss_pred             EEEeCCCC-CHHHHHHHHHHHHHHHHH
Q psy16848        455 RLAPTPFH-TREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       455 Rl~~~~~~-t~e~id~~~~~l~~~l~~  480 (514)
                      |++++..+ |++|++++++.|++++++
T Consensus       361 ~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          361 WLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             EEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999889 999999999999998764

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.93  E-value=8.3e-25  Score=224.26  Aligned_cols=288  Identities=12%  Similarity=0.070  Sum_probs=203.4

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+..+++++++++++|.+++++++||++|+..++.++.+  +||+|+++.+.|.++...++.                 
T Consensus        80 ~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~-----------------  140 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEPSQDFCSK-----------------  140 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEETTSCHHHHHHHHH-----------------
T ss_pred             CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHH-----------------
Confidence            3577899999999999998899999999999999988866  999999999999887743310                 


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (415)
T 2fq6_A          141 --------------------------------------------------------------------------------  140 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH--cCCEEEEe
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ--HGALTFVD  295 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~--~gv~li~D  295 (514)
                                 .+...|.++.+++.+|.+.+++.+    +++|++|++++++||+|.++|+++|.++|++  +|+++|+|
T Consensus       141 -----------~l~~~G~~v~~v~~~d~~~le~ai----~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD  205 (415)
T 2fq6_A          141 -----------ILSKLGVTTSWFDPLIGADIVKHL----QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID  205 (415)
T ss_dssp             -----------TGGGGTCEEEEECTTCGGGGGGGC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred             -----------HHHHcCcEEEEECCCCHHHHHHhh----ccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEE
Confidence                       112234555555555555554444    3468999999999999999999999999999  99999999


Q ss_pred             ccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHH
Q psy16848        296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGARE  371 (514)
Q Consensus       296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~  371 (514)
                      ++|+.+....      +   +..++|++++|+||++++.    ||++++++++++.+.......  +...++..+..+..
T Consensus       206 ~a~a~~~~~~------p---~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~--G~~~~~~~a~~~~~  274 (415)
T 2fq6_A          206 NTWAAGVLFK------A---LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM--GQMVDADTAYITSR  274 (415)
T ss_dssp             CTTTTTTSSC------G---GGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHT--TCCCCHHHHHHHHH
T ss_pred             CCCcccccCC------c---cccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhc--CCCCCHHHHHHHHh
Confidence            9998543211      1   1237899999999999874    389999888888776544322  33456665555555


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc--c----------------cCCCcEEEEEeCCC---ccHHHHHH
Q psy16848        372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV--E----------------HTPSHIIPIKIGNP---ALNTKICD  429 (514)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~----------------~~~~~~~~i~l~~~---~~~~~~~~  429 (514)
                      .++.+     ....++..++.+.+.+.|++. .+..  .                ...++++.+.+++.   .....+.+
T Consensus       275 ~l~~l-----~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~  349 (415)
T 2fq6_A          275 GLRTL-----GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLD  349 (415)
T ss_dssp             HHHHH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHT
T ss_pred             hhhHH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHH
Confidence            55533     335566677777888888775 2210  0                12456889998752   34455555


Q ss_pred             HHHHhCCeEEecccCCC------------------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        430 MLLKEKGHYVQPINYPT------------------VPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       430 ~Ll~~~GI~v~~~~~~~------------------~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      .+ +..++.++.|..|.                  ....++.+|+|++..+++++++.+.++|++
T Consensus       350 ~l-~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          350 NF-SLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             TC-SSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             hC-CcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence            54 24445554332211                  111257999999999999999998888864

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.93  E-value=1e-24  Score=227.67  Aligned_cols=358  Identities=15%  Similarity=0.107  Sum_probs=228.2

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l   95 (514)
                      .|+.|+|+.+....  +.+.+++.+++.. +..      .++..+...+++++++++++.+++++++|||+|+..++.++
T Consensus        41 ~g~~ylD~~~~~~~--~~v~~a~~~~~~~-~~~------~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~  111 (467)
T 1ax4_A           41 SSAVYIDLLTDSGT--NAMSDHQWAAMIT-GDE------AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL  111 (467)
T ss_dssp             GGGCSEECSCSSSC--CCEEHHHHHHHHT-CCC------CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred             CCceeeecccCcCC--HHHHHHHHHHHhh-ccc------ccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence            45567777543332  8888888887764 211      12334567899999999999998999999999999999887


Q ss_pred             cc--cCCCce---EEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         96 GK--MIPGLH---YISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        96 ~~--~~~gd~---v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      ..  ..+||.   |+++.+.|.....+++..|.+++......  .+       ...                        
T Consensus       112 ~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~--~~-------~~~------------------------  158 (467)
T 1ax4_A          112 LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK--AF-------DSE------------------------  158 (467)
T ss_dssp             HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGG--GG-------CTT------------------------
T ss_pred             HHhhccCCCccceEEEeccccchhhHHHhccCCceecccccc--cc-------ccc------------------------
Confidence            42  017898   88885555666767777777655332100  00       000                        


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCChhHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLT  249 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~  249 (514)
                                                                                       ...... ..|.+.++
T Consensus       159 -----------------------------------------------------------------~~~~~~~~~d~~~le  173 (467)
T 1ax4_A          159 -----------------------------------------------------------------TYDDWKGDFDIKKLK  173 (467)
T ss_dssp             -----------------------------------------------------------------SCCTTTTCBCHHHHH
T ss_pred             -----------------------------------------------------------------ccCCcccccCHHHHH
Confidence                                                                             000000 12677777


Q ss_pred             HHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccc-ccc-------CCCCCCccccC-CC
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAV-GLY-------GEHGAGIGERD-GQ  316 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~-g~~-------g~~~~~~~~~~-~~  316 (514)
                      +.+.+...+++++|++++++||+ |.+++   +++|+++|++||+++|+|+++.+ +..       +..+.++.+.. ..
T Consensus       174 ~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (467)
T 1ax4_A          174 ENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM  253 (467)
T ss_dssp             HHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH
T ss_pred             HHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhh
Confidence            77765322358999999999999 88877   68999999999999999999774 221       11221111110 00


Q ss_pred             ccCceEEEcCCcccccCC-CeEEEec-H-HHHHHHHhhcCce-E-ecc-CCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        317 LHNMDIISGTLGKAFGNI-GGYIVGT-K-NFIDTIRSYAAGF-I-FTT-SLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~-GG~l~~~-~-~~~~~l~~~~~~~-~-~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                      ....|++++|+||++|.+ ||+++++ + ++++.+......+ . .+. ..+...+.++..+++...+   ++..++..+
T Consensus       254 ~~~~d~~~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~  330 (467)
T 1ax4_A          254 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIG  330 (467)
T ss_dssp             GGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             ccccceEEEeccccCCCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHH
Confidence            023678889999999876 6888877 6 7877765432211 0 011 2233333333335554322   123344456


Q ss_pred             HHHHHHHHHHhCCCccccC-CCcEEEEE-------eCC-CccHHHHHHHHHHhCCeEEec-ccCCCC---------CCCC
Q psy16848        391 IVAYLRNELIQIGFPVEHT-PSHIIPIK-------IGN-PALNTKICDMLLKEKGHYVQP-INYPTV---------PVGE  451 (514)
Q Consensus       391 ~~~~l~~~L~~~g~~~~~~-~~~~~~i~-------l~~-~~~~~~~~~~Ll~~~GI~v~~-~~~~~~---------~~~~  451 (514)
                      +++++.+.|++.++++..+ .+.++++.       ++. ..+..++++.|++++||.+.+ +.++..         +...
T Consensus       331 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~  410 (467)
T 1ax4_A          331 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM  410 (467)
T ss_dssp             HHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred             HHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence            7788888888777776544 34566666       332 234678888884589999988 543111         1124


Q ss_pred             cEEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        452 EKIRLAPTP-FHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       452 ~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +++|++++. .+|++++++++++|++++++.+.
T Consensus       411 ~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~~  443 (467)
T 1ax4_A          411 EFMRLTIARRVYTNDHMDYIADALIGLKEKFAT  443 (467)
T ss_dssp             CEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred             ceEEEecccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            799999984 48999999999999999887643

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.93  E-value=1.3e-24  Score=221.90  Aligned_cols=286  Identities=15%  Similarity=0.090  Sum_probs=201.0

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.++.++++||++|+..++. +.+  +||+|+++.+.|.++...++                   
T Consensus        54 ~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~--~gd~Vi~~~~~y~~~~~~~~-------------------  111 (393)
T 1n8p_A           54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLP--QGSHAVSIGDVYGGTHRYFT-------------------  111 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSC--SSCEEEEESSCCHHHHHHHH-------------------
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcC--CCCEEEEeCCCchHHHHHHH-------------------
Confidence            46788999999999999889999999999999998 765  99999999999987654221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (393)
T 1n8p_A          112 --------------------------------------------------------------------------------  111 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc----CCEEEE
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH----GALTFV  294 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~----gv~li~  294 (514)
                               ..+...|++++.++.+| +.+++.+    ++++++|++++++||+|.++|+++|.++|+++    |+++|+
T Consensus       112 ---------~~~~~~G~~v~~v~~~d-~~l~~~i----~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~liv  177 (393)
T 1n8p_A          112 ---------KVANAHGVETSFTNDLL-NDLPQLI----KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV  177 (393)
T ss_dssp             ---------HTSTTTCSCCEEESSHH-HHHHHHS----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEE
T ss_pred             ---------HHHHHcCcEEEEeCCCh-HHHHHhc----ccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEE
Confidence                     01112244455555433 3333333    35689999999999999999999999999999    999999


Q ss_pred             eccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHH
Q psy16848        295 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGA  369 (514)
Q Consensus       295 Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~  369 (514)
                      |++|+.+...       ...  ..++|++++|+||++|+.|    |+++++ +++++.+......+  +...++..+.++
T Consensus       178 D~a~~~~~~~-------~~~--~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~  246 (393)
T 1n8p_A          178 DNTFLSPYIS-------NPL--NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAI--GAIPSPFDAWLT  246 (393)
T ss_dssp             ECTTTHHHHC-------CGG--GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHH
T ss_pred             eCCccccccC-------CHH--HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHH
Confidence            9999966542       111  2268999999999999765    999884 78888877654333  335566666655


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC--Cc-c-c----------------cC-C-CcEEEEEeCCC-ccHHH
Q psy16848        370 REAIRILSSQEGVELRAKHQDIVAYLRNELIQIG--FP-V-E----------------HT-P-SHIIPIKIGNP-ALNTK  426 (514)
Q Consensus       370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~-~----------------~~-~-~~~~~i~l~~~-~~~~~  426 (514)
                      ..+++.     +....++..++.+.+.+.|++..  +. + .                .. . ++++.+.++.. .+...
T Consensus       247 ~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~  321 (393)
T 1n8p_A          247 HRGLKT-----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASK  321 (393)
T ss_dssp             HHHHTT-----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHH
T ss_pred             Hhccch-----HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHH
Confidence            555543     23455666677777777777652  21 1 0                11 3 66888988743 34555


Q ss_pred             HHHHHHHhCCeEEecccCCC------C--------------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        427 ICDMLLKEKGHYVQPINYPT------V--------------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       427 ~~~~Ll~~~GI~v~~~~~~~------~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.+.+ +..++.++.|..|.      .              ...++.+|+|++..+++++++.+.++|+++
T Consensus       322 ~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          322 FASST-RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHHC-SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHhhC-CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            66665 34555554332111      0              112579999999999999999999998865

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.93  E-value=6.4e-25  Score=226.38  Aligned_cols=338  Identities=13%  Similarity=0.012  Sum_probs=224.3

Q ss_pred             eeecccCCC----CC-ChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-cEEEEecccc-cc--c
Q psy16848         20 TCRLSSVQY----KV-PKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-AGLVFTSCYV-AN--D   89 (514)
Q Consensus        20 ~~d~~~~~~----~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~i~~~sGt~-a~--~   89 (514)
                      .+||..+..    ++ +|.+.+++.+++. ..+.    ....|+......++++.++++++.+ +.+++++|++ ++  .
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~  109 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGV----DCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFD  109 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCC----BTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccch----hhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHH
Confidence            689976655    22 3467766654321 1110    1112222333578888888888754 3455666554 55  3


Q ss_pred             cchhhccccCC------------CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848         90 STLFTLGKMIP------------GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  157 (514)
Q Consensus        90 ~~l~~l~~~~~------------gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~  157 (514)
                      .++.++..  +            +|.|+++.++|......++..|.+++.++.++ +                       
T Consensus       110 ~~~~~l~~--~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~-----------------------  163 (422)
T 3d6k_A          110 LISWSYTW--GNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTD-E-----------------------  163 (422)
T ss_dssp             HHHHHHHH--CCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-T-----------------------
T ss_pred             HHHHHhcC--cccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCC-C-----------------------
Confidence            44455543  4            34799999999998887777777766544310 0                       


Q ss_pred             cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848        158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK  237 (514)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~  237 (514)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (422)
T 3d6k_A          164 --------------------------------------------------------------------------------  163 (422)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCChhHHHHHHhhccCCCceEEE-EecCCCCCccccCH---HHHHHHHH-HcCCEEEEeccccccccCCCCCCccc
Q psy16848        238 IIYRHNDVNHLTQVLENMDVKIPKLVA-FETVHSMTGAICPL---KELCEVSH-QHGALTFVDEVHAVGLYGEHGAGIGE  312 (514)
Q Consensus       238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv-~~~~~nptG~~~~l---~~l~~l~~-~~gv~li~Dea~~~g~~g~~~~~~~~  312 (514)
                          ..|++.+++.+++   .++++++ +++++||||.+++.   ++|.++|+ +||+++|+||+|..+.+...+....+
T Consensus       164 ----g~d~~~l~~~l~~---~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~  236 (422)
T 3d6k_A          164 ----GPDMGVVRELVKD---PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHN  236 (422)
T ss_dssp             ----EECHHHHHHHHTS---TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCC
T ss_pred             ----CCCHHHHHHHHhc---CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcC
Confidence                0145555555532   2477877 78999999999995   58888888 99999999999984222222211111


Q ss_pred             c------CCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh--hhchH
Q psy16848        313 R------DGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL--SSQEG  381 (514)
Q Consensus       313 ~------~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~  381 (514)
                      .      .+ ..+.+++++||||+. .+|   ||+++++++++.+......+  +.+.+.+.+.++.++++..  ...++
T Consensus       237 ~~~~~~~~~-~~~~~i~~~S~SK~~-~~GlriG~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~  312 (422)
T 3d6k_A          237 VIEFAQAAG-NPNRFWFMSSTSKIT-HAGSGVSFFASSKENIEWYASHANVR--GIGPNKLNQLAHAQFFGDVAGLKAHM  312 (422)
T ss_dssp             HHHHHHHTT-CTTCEEEEEESTTTS-CTTSSCEEEECCHHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHCSHHHHHHHH
T ss_pred             hhhHhhccC-CCCcEEEEcChhhhc-CcccceEEEEeCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHhCcchHHHHH
Confidence            1      11 236789999999984 446   99999999999888765444  3467888888888877631  12456


Q ss_pred             HHHHHHHHHHHHHHHHHHHh----CC-CccccC-CCcEEEEEeCCCccHHHHHHHHHHhCCeEEec-ccCCC-CC-CCCc
Q psy16848        382 VELRAKHQDIVAYLRNELIQ----IG-FPVEHT-PSHIIPIKIGNPALNTKICDMLLKEKGHYVQP-INYPT-VP-VGEE  452 (514)
Q Consensus       382 ~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~-~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~-~~~~~-~~-~~~~  452 (514)
                      ++.++.++++++++.+.|.+    .+ +.+..+ .+.++++.++.. +..++.+.| +++||.+.+ +.++. .. ...+
T Consensus       313 ~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~l-~~~gV~v~~~g~~f~~~~~~~~~  390 (422)
T 3d6k_A          313 LKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-TASRVVELA-KEAGIALTGAGSSFPLHNDPNNE  390 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-CHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-CHHHHHHHH-HHCCeEEEcCccccCCCCCCCCC
Confidence            67778888888888887765    23 454444 455778888753 456777777 599999998 44332 11 2467


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++|++++. ++++++++++++|+++++++
T Consensus       391 ~iRis~~~-~~~e~i~~~~~~l~~~l~~~  418 (422)
T 3d6k_A          391 NIRLAPSL-PPVAELEVAMDGFATCVLMA  418 (422)
T ss_dssp             EEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence            99999996 89999999999999988764

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.93  E-value=1.4e-25  Score=225.81  Aligned_cols=328  Identities=9%  Similarity=0.056  Sum_probs=221.7

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCc-----ccCcchHHHHHHHHHHhHcCCC--cEEE-Eecc-ccccc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRN-----ISGNSLFHEKLEEDVAKLHQKE--AGLV-FTSC-YVAND   89 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~--~~i~-~~sG-t~a~~   89 (514)
                      +.+++..+.+..+|.+.+++.+.+..+ .+.+...+     ..+..+..+++++++++++|.+  +.++ ++++ |+|+.
T Consensus         3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~   81 (360)
T 1w23_A            3 QVFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT   81 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred             ceEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHH
Confidence            345565555556789999998887654 11111111     2233457889999999999975  2444 4444 67888


Q ss_pred             cchhhcccc-CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         90 STLFTLGKM-IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        90 ~~l~~l~~~-~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .++.++... .+||.|+++.++|.+.. .++..| +++.++.+..+                          |       
T Consensus        82 ~~~~~l~~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~--------------------------~-------  126 (360)
T 1w23_A           82 MLPMNLLTKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKAN--------------------------S-------  126 (360)
T ss_dssp             HHHHHHCCTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGG--------------------------T-------
T ss_pred             HHHHHhcCCCCcccEEEecchhHHHHH-HHHHhC-CeEEeeccccc--------------------------C-------
Confidence            877777641 25788999888887643 234445 54433221000                          0       


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                               ..|.+.+
T Consensus       127 -------------------------------------------------------------------------~~d~~~l  133 (360)
T 1w23_A          127 -------------------------------------------------------------------------YQSIPDF  133 (360)
T ss_dssp             -------------------------------------------------------------------------SCSCCCG
T ss_pred             -------------------------------------------------------------------------cCCccch
Confidence                                                                                     0022222


Q ss_pred             HHHHhh-ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        249 TQVLEN-MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       249 ~~~l~~-~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                          ++ ..++++++|++++++||||.+++  +   ++++||+++|+|++|+.+..     +. +..    ..|++++|+
T Consensus       134 ----~~~~i~~~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~-----~~-~~~----~~di~~~s~  194 (360)
T 1w23_A          134 ----SEFQLNENDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSR-----PL-KVN----QFGMIYAGA  194 (360)
T ss_dssp             ----GGCCCCTTEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSS-----CC-CGG----GCSEEEEET
T ss_pred             ----HhhccCCCCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCC-----Cc-Ccc----cCCEEEEEc
Confidence                22 33567899999999999999987  3   33389999999999986542     11 111    237999999


Q ss_pred             cccccCCC-eEEEecHHHHHHHHhhcCceE---------e-ccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHH
Q psy16848        328 GKAFGNIG-GYIVGTKNFIDTIRSYAAGFI---------F-TTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYL  395 (514)
Q Consensus       328 sK~lg~~G-G~l~~~~~~~~~l~~~~~~~~---------~-~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l  395 (514)
                      ||.+|+.| |++++++++++.+........         + ..+.+...+.++.++++.+.+. ++++++++++++++++
T Consensus       195 sK~~~~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  274 (360)
T 1w23_A          195 QKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKII  274 (360)
T ss_dssp             TTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            99999878 999999888766544321100         0 1245666777777888876544 6788999999999999


Q ss_pred             HHHHHhCC-C-ccc-cC--CCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHH
Q psy16848        396 RNELIQIG-F-PVE-HT--PSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDK  469 (514)
Q Consensus       396 ~~~L~~~g-~-~~~-~~--~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~  469 (514)
                      .+.|++++ + ... .+  .++ ++++.+++..+..++.+.|. ++||.+.++..     ..+++|++++..++++++++
T Consensus       275 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~-----~~~~iRis~~~~~~~~~i~~  348 (360)
T 1w23_A          275 YDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAK-EQGFVGLNGHR-----SVGGCRASIYNAVPIDACIA  348 (360)
T ss_dssp             HHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHH-HTTEESCBCCT-----TTCSEEEECCTTSCHHHHHH
T ss_pred             HHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHH-HCCeeeecCCC-----CCCeEEEEecCCCCHHHHHH
Confidence            99999875 4 432 12  234 78888876445677888884 89999876653     14689999998889999999


Q ss_pred             HHHHHHHHHHH
Q psy16848        470 FVTDLLAVWKS  480 (514)
Q Consensus       470 ~~~~l~~~l~~  480 (514)
                      ++++|++++++
T Consensus       349 ~~~~l~~~~~~  359 (360)
T 1w23_A          349 LRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.93  E-value=5.2e-25  Score=223.30  Aligned_cols=324  Identities=17%  Similarity=0.184  Sum_probs=210.0

Q ss_pred             hcCCc-eeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccc
Q psy16848         14 HKSNR-VTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVA   87 (514)
Q Consensus        14 ~~~g~-~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a   87 (514)
                      ...|. .++|+.+.  .+..+|++.+++.    .+    +      +...+.+++++.+++++|.   +++++++||++|
T Consensus        23 ~~~g~~~v~~~~~~~~~~~~~~~v~~a~~----~~----~------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a   88 (374)
T 2aeu_A           23 NEKGRDALYDLSGLSGGFLIDEKDKALLN----TY----I------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSA   88 (374)
T ss_dssp             HHTCGGGCEECSSCCCCCCCCHHHHHHHT----ST----T------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred             hccCccceeeecccCCCCCCCHHHHHHHH----Hh----c------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHH
Confidence            34676 67787543  3334667666664    21    1      1134557788888888998   678888999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhh---hhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMI---QGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      +..++.++    +||.|+++.+.|++..   ..++..                                           
T Consensus        89 ~~~~~~~~----~gd~Vl~~~~~y~~~~~~~~~~~~~-------------------------------------------  121 (374)
T 2aeu_A           89 ILATILAL----KPKKVIHYLPELPGHPSIERSCKIV-------------------------------------------  121 (374)
T ss_dssp             HHHHHHHH----CCSEEEEECSSSSCCTHHHHHHHHT-------------------------------------------
T ss_pred             HHHHHHhC----CCCEEEEecCCCCccHHHHHHHHHc-------------------------------------------
Confidence            99888766    8999999998665432   233333                                           


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                                                           |++++.+  .|
T Consensus       122 ---------------------------------------------------------------------g~~~~~v--~d  130 (374)
T 2aeu_A          122 ---------------------------------------------------------------------NAKYFES--DK  130 (374)
T ss_dssp             ---------------------------------------------------------------------TCEEEEE--SC
T ss_pred             ---------------------------------------------------------------------CcEEEEe--CC
Confidence                                                                                 3444444  23


Q ss_pred             hhHHHHHHhhccCCCceE-EEEecCCCCCc-cccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        245 VNHLTQVLENMDVKIPKL-VAFETVHSMTG-AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~-vv~~~~~nptG-~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      .+.+++    . ++++++ |++++++||+| ...++++|.++|++||+++|+||+|+.+..+......  .  ...++|+
T Consensus       131 ~~~l~~----~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~--~~~~~di  201 (374)
T 2aeu_A          131 VGEILN----K-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP--A--LKLGADL  201 (374)
T ss_dssp             HHHHHT----T-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC--H--HHHTCSE
T ss_pred             HHHHHh----c-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCC--c--cccCCcE
Confidence            333332    2 356889 99999999999 7778999999999999999999999855321110000  1  1235799


Q ss_pred             EEcCCcccccC-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH----HHHHHH
Q psy16848        323 ISGTLGKAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI----VAYLRN  397 (514)
Q Consensus       323 ~~~S~sK~lg~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~  397 (514)
                      +++|+||++++ .+||+++++++++.+......+  +.+.++..++++.++++.+..+.+.+..++.+..    .+.+.+
T Consensus       202 ~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~  279 (374)
T 2aeu_A          202 VVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKF--GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNK  279 (374)
T ss_dssp             EEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTT--TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             EEecCcccccCcceEEEEECHHHHHHHHHhhccc--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999864 3499999999999887655333  3356888888888888865321222333333333    455555


Q ss_pred             HHHhC----CCccccCCCcEEEEE--eCCCc---cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCC-CCCHHHH
Q psy16848        398 ELIQI----GFPVEHTPSHIIPIK--IGNPA---LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTP-FHTREMI  467 (514)
Q Consensus       398 ~L~~~----g~~~~~~~~~~~~i~--l~~~~---~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~i  467 (514)
                      .|.+.    |+.+..+..+++...  ++...   +..+++..+++++||.+.++..+  +.+.+++|++++. ..+++++
T Consensus       280 ~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~--~~~~~~lRi~~~~~~~~~~~l  357 (374)
T 2aeu_A          280 ELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM--PGASKSLRIDLTSRDAERIDD  357 (374)
T ss_dssp             HHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS--CSSCCSEEEETTSGGGGGSCH
T ss_pred             hhhhhhhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC--CCCCCeEEEEcCCchHHHHHH
Confidence            55543    444433333433332  22111   11236666666789999987642  3345689999973 2233358


Q ss_pred             HHHHHHHHHHHHHcC
Q psy16848        468 DKFVTDLLAVWKSLD  482 (514)
Q Consensus       468 d~~~~~l~~~l~~~~  482 (514)
                      +++.+.++++++++.
T Consensus       358 ~~l~~~l~~~l~~~~  372 (374)
T 2aeu_A          358 NYIIKAIVESIKMAF  372 (374)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.93  E-value=3.7e-24  Score=218.20  Aligned_cols=282  Identities=15%  Similarity=0.125  Sum_probs=197.5

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+...++++++++++|.+++++++||++|+..++.++..  +||+|+++.+.|.++...++                   
T Consensus        58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~--~gd~vl~~~~~y~~~~~~~~-------------------  116 (389)
T 3acz_A           58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQ--KGDHLIAGDTLYGCTVSLFT-------------------  116 (389)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCC--TTCEEEEESSCCHHHHHHHH-------------------
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHH-------------------
Confidence            567899999999999999999999999999999988865  99999999999998765421                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (389)
T 3acz_A          117 --------------------------------------------------------------------------------  116 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.+++.++..|.+.+++.+    ++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|
T Consensus       117 ---------~~~~~~g~~~~~v~~~d~~~l~~~i----~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~  183 (389)
T 3acz_A          117 ---------HWLPRFGIEVDLIDTSDVEKVKAAW----KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATF  183 (389)
T ss_dssp             ---------HHHHHTTCEEEEECTTCHHHHHHTC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred             ---------HHHHHcCCEEEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence                     0112234445555554555554444    345899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecH-HHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTK-NFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+..+.      +.   ..++|+++.|+||+++++    ||++++++ ++++.+......+  +...++..+.++...+
T Consensus       184 ~~~~~~~------~~---~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~l  252 (389)
T 3acz_A          184 TSPCFLK------PL---ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA--GSLMAPMDAFLCARGM  252 (389)
T ss_dssp             TCTTTCC------GG---GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_pred             ccccccC------cc---ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHcCc
Confidence            8554321      11   237899999999999764    48999988 8888887655333  3456777777666666


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhCC---------C------ccc----cCCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQIG---------F------PVE----HTPSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~------~~~----~~~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +.+     ....++..++.+.+.+.|++.+         +      .+.    ...++++.+.+++   ..+..+.+ ++
T Consensus       253 ~~l-----~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~l-~~  323 (389)
T 3acz_A          253 KTL-----PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---FEAAKKLM-EH  323 (389)
T ss_dssp             TTH-----HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---HHHHHHHH-TT
T ss_pred             cHH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---HHHHHHHH-Hh
Confidence            532     2345556666777777776641         1      111    1236688888864   34455555 58


Q ss_pred             CCeEEecc---------cCCCCC--------------CCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        435 KGHYVQPI---------NYPTVP--------------VGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       435 ~GI~v~~~---------~~~~~~--------------~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      .|+.+...         ..|..+              ..++.+|++++...+++.++.+.++|
T Consensus       324 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al  386 (389)
T 3acz_A          324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQAL  386 (389)
T ss_dssp             CSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHH
Confidence            89888763         222211              12579999999765444444444443

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.93  E-value=8.3e-25  Score=221.66  Aligned_cols=309  Identities=12%  Similarity=0.017  Sum_probs=212.5

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~  109 (514)
                      +|++.+++.+.+....         ++..+..+++++.+++++|.+++++++|||+|+..++.++ .+  +||.|+++.+
T Consensus        16 ~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~--~gd~Vi~~~~   84 (373)
T 3frk_A           16 EYEIKFKFEEIYKRNW---------FILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIG--FGDEVIVPSN   84 (373)
T ss_dssp             HHHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEETT
T ss_pred             CHHHHHHHHHHHHCCC---------ccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            4667777777776521         1334778999999999999999999999999999999888 55  9999999999


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +|.++..+++..|++++.++.+. +                                                       
T Consensus        85 ~~~~~~~~~~~~g~~~~~~~~~~-~-------------------------------------------------------  108 (373)
T 3frk_A           85 TFIATALAVSYTGAKPIFVEPDI-R-------------------------------------------------------  108 (373)
T ss_dssp             SCTHHHHHHHHHSCEEEEECEET-T-------------------------------------------------------
T ss_pred             CcHHHHHHHHHcCCEEEEEeccc-c-------------------------------------------------------
Confidence            99999988887777776554320 0                                                       


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                           ..                                             .-|.+.+++    ..++++++|+   ++
T Consensus       109 -----~~---------------------------------------------~~d~~~l~~----~l~~~~~~v~---~~  131 (373)
T 3frk_A          109 -----TY---------------------------------------------NIDPSLIES----AITEKTKAII---AV  131 (373)
T ss_dssp             -----TT---------------------------------------------EECGGGTGG----GCCTTEEEEE---EE
T ss_pred             -----cc---------------------------------------------CcCHHHHHH----hcCCCCeEEE---EE
Confidence                 00                                             002233332    3344678877   56


Q ss_pred             CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC--CCeEEEec-HHH
Q psy16848        270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN--IGGYIVGT-KNF  344 (514)
Q Consensus       270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~--~GG~l~~~-~~~  344 (514)
                      ||+|...++++|.++|+++|+++|+|++|+.|.. ..+    ...+  ...|++++||+  |++++  .||+++++ +++
T Consensus       132 n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~----~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~  204 (373)
T 3frk_A          132 HLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL-YKG----MKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDL  204 (373)
T ss_dssp             CCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE-ETT----EETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCHHH
T ss_pred             CCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE-ECC----Eecc--ccccEEEEeCcCCCccCccceeEEEEeCCHHH
Confidence            7899999999999999999999999999996653 111    1111  12578888876  99976  34888776 557


Q ss_pred             HHHHHhhcCc----------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC-C---
Q psy16848        345 IDTIRSYAAG----------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-P---  410 (514)
Q Consensus       345 ~~~l~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~---  410 (514)
                      .+.++.....          .+++..+++..+++....++     .+++..++.+++.+++.+.|+++++.+... .   
T Consensus       205 ~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  279 (373)
T 3frk_A          205 AEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLK-----YLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAK  279 (373)
T ss_dssp             HHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEE
T ss_pred             HHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCc
Confidence            6666543321          11233456666665554443     334577888888888888888765333211 1   


Q ss_pred             Cc--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----------C---------CCcEEEEEeCCCCCHHHHH
Q psy16848        411 SH--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----------V---------GEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       411 ~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----------~---------~~~~iRl~~~~~~t~e~id  468 (514)
                      ..  .+.+...   +..++.+.|. ++||.++++..+...           .         ..+.+|++++..+|++|++
T Consensus       280 ~~~~~~~~~~~---~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~  355 (373)
T 3frk_A          280 HVWYTFVIRSE---KRDELQKYLN-NNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIE  355 (373)
T ss_dssp             CCCSSEEEEES---SHHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred             eeeEEEEEEeC---CHHHHHHHHH-HCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHH
Confidence            11  2334433   4678889995 899999865411110           0         0268999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy16848        469 KFVTDLLAVWK  479 (514)
Q Consensus       469 ~~~~~l~~~l~  479 (514)
                      +++++|+++..
T Consensus       356 ~~~~~l~~~~~  366 (373)
T 3frk_A          356 YVIDKINAWKL  366 (373)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHhh
Confidence            99999987543

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=1.4e-24  Score=220.55  Aligned_cols=224  Identities=17%  Similarity=0.187  Sum_probs=169.7

Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN  319 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~  319 (514)
                      .|.+.+++.+++.   +++++++.+++|++|.+.|   +++|.++|++||+++|+|++++ |..     ++ ...  ..+
T Consensus       122 ~d~~~l~~~i~~~---~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~-----~~-~~~--~~~  189 (379)
T 3ke3_A          122 VDIETAVAKIKED---KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCV-----WL-DMK--ELG  189 (379)
T ss_dssp             CCHHHHHHHHHHH---TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTC-----CC-CHH--HHT
T ss_pred             CCHHHHHHHHhhc---CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCc-----cc-ccc--ccC
Confidence            3667777777532   4788999999999999999   9999999999999999999997 532     11 111  236


Q ss_pred             ceEEEcCCcccccC-CC-eEEEecHHHHHHHHhhc-Cce-------------------EeccCCcHHHHHHHHHHHHHhh
Q psy16848        320 MDIISGTLGKAFGN-IG-GYIVGTKNFIDTIRSYA-AGF-------------------IFTTSLPPTVLAGAREAIRILS  377 (514)
Q Consensus       320 ~di~~~S~sK~lg~-~G-G~l~~~~~~~~~l~~~~-~~~-------------------~~~~~~~~~~~~a~~~~l~~~~  377 (514)
                      .|++++|+||++++ .| |++++++++++.+.... ..+                   .+..+.+...++++.++++.+.
T Consensus       190 ~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~  269 (379)
T 3ke3_A          190 IDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAK  269 (379)
T ss_dssp             CSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            89999999999864 45 89999999988886521 111                   1123667888888889999887


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHhCCCccccCC---Cc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC--CCCC
Q psy16848        378 SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP---SH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV--PVGE  451 (514)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~  451 (514)
                      ++++++++++.+++.+++.+.|+++|+.+..+.   .+ +..+..++.  ...+.+.| +++||.+.++..|..  +...
T Consensus       270 ~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~L-~~~Gi~v~~g~~~~~~~~~~~  346 (379)
T 3ke3_A          270 EIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD--DMHKGSAF-AEAGLQIAAGVPLKVGEPDNF  346 (379)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH--HHHSSHHH-HHTTCCCEECCCCSSCCCTTC
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc--chHHHHHH-HHCCeEEeCCccccccccCcC
Confidence            667888999999999999999999988775443   33 333443321  22235667 589999998876443  3346


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +.+|++++..+|++|+++++++|+++++++
T Consensus       347 ~~lRis~~~~~t~~di~~~~~~l~~~l~~~  376 (379)
T 3ke3_A          347 KTFRLGLFGLDKLTDIDGTVERFEKALDEV  376 (379)
T ss_dssp             CEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence            799999998899999999999999998875

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.93  E-value=1.8e-24  Score=226.27  Aligned_cols=327  Identities=15%  Similarity=0.104  Sum_probs=224.9

Q ss_pred             CChhHHHHHHHHHHHhCCCCCCcC-cccCcchHHHHHHHHHHhHcCCCcEEEE-eccccccccchhhccc--cCCCc---
Q psy16848         30 VPKGGRKCLGEALEKFGTGAGGTR-NISGNSLFHEKLEEDVAKLHQKEAGLVF-TSCYVANDSTLFTLGK--MIPGL---  102 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~i~~-~sGt~a~~~~l~~l~~--~~~gd---  102 (514)
                      .+|++.+++.+.+..  .+...+. ...|..++.+++++++++++|.+..+++ ++|++|+..++.++..  ..+||   
T Consensus        78 ~~p~v~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~  155 (474)
T 1wyu_B           78 YNPKLHEEAARLFAD--LHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT  155 (474)
T ss_dssp             CCCHHHHHHHHTTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCHHHHHHHHHHHHh--cCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence            368888777765211  1111111 2345568889999999999998876544 6678888776655421  23777   


Q ss_pred             --eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceE
Q psy16848        103 --HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT  180 (514)
Q Consensus       103 --~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (514)
                        .|+++.+.|.+...+++..|.+++.++.++ +                                              
T Consensus       156 r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~-~----------------------------------------------  188 (474)
T 1wyu_B          156 RRVVLVPDSAHGSNPATASMAGYQVREIPSGP-E----------------------------------------------  188 (474)
T ss_dssp             CCEEEEETTSCTHHHHHHHHTTCEEEEECBCT-T----------------------------------------------
T ss_pred             CCEEEEeCCcChhhHHHHHHCCCEEEEecCCC-C----------------------------------------------
Confidence              999999999998877777777666554310 0                                              


Q ss_pred             EeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCc
Q psy16848        181 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP  260 (514)
Q Consensus       181 ~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~  260 (514)
                                      |                                            .-|.+.+++.+    ++++
T Consensus       189 ----------------~--------------------------------------------~~d~~~L~~~i----~~~t  204 (474)
T 1wyu_B          189 ----------------G--------------------------------------------EVDLEALKREL----GPHV  204 (474)
T ss_dssp             ----------------S--------------------------------------------SBCHHHHHHHC----STTE
T ss_pred             ----------------C--------------------------------------------CcCHHHHHHhh----CCCc
Confidence                            0                                            00344444444    3458


Q ss_pred             eEEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC-----
Q psy16848        261 KLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-----  334 (514)
Q Consensus       261 ~~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-----  334 (514)
                      ++|+++++ |++|.+ .++++|.++|++||+++|+|++|+.+..+..     ...  ..++|++++|+||+++.+     
T Consensus       205 ~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~-----~~~--~~g~di~~~s~~K~~~~p~g~gG  276 (474)
T 1wyu_B          205 AALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWA-----RPG--DMGFDVVHLNLHKTFTVPHGGGG  276 (474)
T ss_dssp             EEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC-----CHH--HHTCSEEECCTTTTTCCCCTTSC
T ss_pred             eEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCC-----Ccc--cCCCcEEEEeCccccccCCCCCC
Confidence            89999997 689998 5899999999999999999999986554311     111  236899999999998643     


Q ss_pred             -C-eEEEecHHHHHHHHh-hc----CceEe------------ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy16848        335 -G-GYIVGTKNFIDTIRS-YA----AGFIF------------TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       335 -G-G~l~~~~~~~~~l~~-~~----~~~~~------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  395 (514)
                       | |++++++++++.+.. ..    ..+.+            +.+.+...+.++...++.+..+++++..+++.++++++
T Consensus       277 ~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l  356 (474)
T 1wyu_B          277 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL  356 (474)
T ss_dssp             CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3 899999888766641 10    01110            12346666777777776554566777889999999999


Q ss_pred             HHHHHhCCCccccCCCcE--EEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848        396 RNELIQIGFPVEHTPSHI--IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD  473 (514)
Q Consensus       396 ~~~L~~~g~~~~~~~~~~--~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~  473 (514)
                      .+.|++.|+++..+...+  +.+.++...+..++.+.|+ ++||.+ ++..+. ....+++|++++..+|++++++++++
T Consensus       357 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~~-~~~~~~-~~~~~~lRis~~~~~t~e~id~~~~~  433 (474)
T 1wyu_B          357 KELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLL-ELGFHP-PTVYFP-LIVKEALMVEPTETEAKETLEAFAEA  433 (474)
T ss_dssp             HHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHH-HTTCCC-CEESCS-TTSTTCEEECCCTTSCHHHHHHHHHH
T ss_pred             HHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHH-HCCccc-cccccc-cccCCEEEEEeecCCCHHHHHHHHHH
Confidence            999998877663222222  4455543456788999996 789986 333211 12357899999988899999999999


Q ss_pred             HHHHHHH
Q psy16848        474 LLAVWKS  480 (514)
Q Consensus       474 l~~~l~~  480 (514)
                      |++++++
T Consensus       434 L~~~~~~  440 (474)
T 1wyu_B          434 MGALLKK  440 (474)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHHh
Confidence            9998765

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.93  E-value=1.5e-24  Score=219.63  Aligned_cols=321  Identities=15%  Similarity=0.124  Sum_probs=219.0

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GK   97 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~   97 (514)
                      .++|+..+...-.+ +.+++.+.+....         ++..+...++++.++++++.+++++++|||+|+..++.++ ..
T Consensus         7 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~   76 (374)
T 3uwc_A            7 PYSYLERQFADIEP-YLNDLREFIKTAD---------FTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIG   76 (374)
T ss_dssp             CSCCHHHHTSSCHH-HHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC
T ss_pred             eeeccccCCCCchH-HHHHHHHHHHcCC---------cccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC
Confidence            34555433322234 7777777776521         1234678999999999999999999999999999999888 65


Q ss_pred             cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848         98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  177 (514)
Q Consensus        98 ~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
                        +||.|+++.++|.+...+++..|.+++.++.++.                           +                
T Consensus        77 --~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------------------------~----------------  111 (374)
T 3uwc_A           77 --AGDEVITCANTFIASVGAIVQAGATPVLVDSENG---------------------------Y----------------  111 (374)
T ss_dssp             --TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT---------------------------S----------------
T ss_pred             --CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCC---------------------------C----------------
Confidence              9999999999999999888877777766544200                           0                


Q ss_pred             ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848        178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  257 (514)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~  257 (514)
                                                                                      .-|.+.+++    ..+
T Consensus       112 ----------------------------------------------------------------~~d~~~l~~----~~~  123 (374)
T 3uwc_A          112 ----------------------------------------------------------------VIDPEKIEA----AIT  123 (374)
T ss_dssp             ----------------------------------------------------------------SBCGGGTGG----GCC
T ss_pred             ----------------------------------------------------------------CcCHHHHHH----hCC
Confidence                                                                            002333332    233


Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccCC-
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGNI-  334 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~~-  334 (514)
                      +++++++   ++||+|...++++|.++|++||+++|+|++|+.|..- .+    ...+  ...|++++|+|  |++++. 
T Consensus       124 ~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~-~~----~~~~--~~~d~~~~s~~~~K~l~~~g  193 (374)
T 3uwc_A          124 DKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRI-ND----KFVG--SWGQFACFSLHPLKNLNVWS  193 (374)
T ss_dssp             TTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TT----EETT--SSSSEEEEECSSSSSSCCSS
T ss_pred             CCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCcee-CC----eecc--ccccEEEEeCCCCCcCCccc
Confidence            4577777   7889999999999999999999999999999965421 00    1111  12588888977  999773 


Q ss_pred             -CeEEEec-HHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        335 -GGYIVGT-KNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       335 -GG~l~~~-~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                       ||+++++ +++.+.+.......          +++..++...+++....+     +.+++..++.+++.+++.+.|++.
T Consensus       194 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~  268 (374)
T 3uwc_A          194 DAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDL  268 (374)
T ss_dssp             CCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGG
T ss_pred             eeEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccC
Confidence             4887765 46766666543211          112233444444433322     345567888889999999999887


Q ss_pred             C--CccccC-CC---c--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC--------------------CCcEE
Q psy16848        403 G--FPVEHT-PS---H--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV--------------------GEEKI  454 (514)
Q Consensus       403 g--~~~~~~-~~---~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~--------------------~~~~i  454 (514)
                      +  +.+... .+   .  .+.+..+   +..++.+.|. ++||.++++.......                    ..+.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~L~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  344 (374)
T 3uwc_A          269 SEFIDVPVRREGVYHVFHIYVLRVK---YRDQLFQYLK-DNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVI  344 (374)
T ss_dssp             TTTEECCCCCTTEECCCSSEEEEET---THHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEE
T ss_pred             CCeEEeccCCCCCceeeEEEEEEcC---CHHHHHHHHH-HCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEE
Confidence            3  544321 11   1  2334433   4678889995 8999998765111000                    12789


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        455 RLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       455 Rl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      |++++..+|++|+++++++|++++++.
T Consensus       345 rl~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          345 TLPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             EccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998764

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.93  E-value=1.1e-23  Score=216.91  Aligned_cols=321  Identities=16%  Similarity=0.142  Sum_probs=224.0

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~  109 (514)
                      +|++.+++.++++....+  .+....|..++.+++++.+++++|.++.++++|||+|+..++.++ ..  +||.|+++.+
T Consensus        15 ~~~~~~a~~~~~~~~~~~--~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~--~gd~Vl~~~~   90 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWA--ISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIG--EGDEVIVPSL   90 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCS--TTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHhcCCcc--ccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            689999999999874222  122345667789999999999999998999999999999999888 55  9999999999


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +|.+...+++..|.+++.++.+.                                                         
T Consensus        91 ~~~~~~~~~~~~g~~~~~~~~~~---------------------------------------------------------  113 (418)
T 2c81_A           91 TWIATATAVLNVNALPVFVDVEA---------------------------------------------------------  113 (418)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCT---------------------------------------------------------
T ss_pred             ccHhHHHHHHHcCCEEEEEecCC---------------------------------------------------------
Confidence            99999888877777666554310                                                         


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                                                                           +++..+.+.+++..++++++|+++   
T Consensus       114 -----------------------------------------------------~~~~~d~~~l~~~i~~~~~~v~~~---  137 (418)
T 2c81_A          114 -----------------------------------------------------DTYCIDPQLIKSAITDKTKAIIPV---  137 (418)
T ss_dssp             -----------------------------------------------------TTCSBCHHHHGGGCCTTEEEECCB---
T ss_pred             -----------------------------------------------------CCCCcCHHHHHHhhCCCCeEEEEe---
Confidence                                                                 011122233444444568888764   


Q ss_pred             CCCccccCHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceEEEcCC--cccccC-CCeEEEec-HHH
Q psy16848        270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTL--GKAFGN-IGGYIVGT-KNF  344 (514)
Q Consensus       270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg~-~GG~l~~~-~~~  344 (514)
                      ||+|...++++|.++|+++|+++|+|++|+.+. ..  +..+   ..   -.|+++.||  ||++++ .||+++++ +++
T Consensus       138 ~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~---~~---~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l  209 (418)
T 2c81_A          138 HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWN--NQRA---GT---IGDIGAFSCQQGKVLTAGEGGIIVTKNPRL  209 (418)
T ss_dssp             CCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET--TEET---TS---SSSEEEEECCTTSSSCSSSCEEEEESCHHH
T ss_pred             CCcCCcccHHHHHHHHHHCCCEEEEECcccccCccC--CEec---cc---ccceEEEeccCCcccCCCCeEEEEECCHHH
Confidence            578999999999999999999999999999664 21  1111   11   124555566  999987 33888884 788


Q ss_pred             HHHHHhhcCceE------------ec------------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        345 IDTIRSYAAGFI------------FT------------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       345 ~~~l~~~~~~~~------------~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      ++.+........            +.            ..++....+.....+     +.+++..++.+++.+++.+.|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~~~~~~~~~~~~~~~l~~~L~  284 (418)
T 2c81_A          210 FELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL-----QELDDKNAIREKNAMFLNDALS  284 (418)
T ss_dssp             HHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence            777765332211            11            012333222222222     3455677888888999999998


Q ss_pred             hC-CCccc-cCCC----c--EEEEEeCC----CccHHHHHHHHHHhC-CeE---EecccCCCCC----------------
Q psy16848        401 QI-GFPVE-HTPS----H--IIPIKIGN----PALNTKICDMLLKEK-GHY---VQPINYPTVP----------------  448 (514)
Q Consensus       401 ~~-g~~~~-~~~~----~--~~~i~l~~----~~~~~~~~~~Ll~~~-GI~---v~~~~~~~~~----------------  448 (514)
                      ++ ++.+. .+.+    .  ++.+.+++    +.+..++.+.|. ++ ||.   ++++..|...                
T Consensus       285 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~  363 (418)
T 2c81_A          285 KIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILR-EKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSV  363 (418)
T ss_dssp             TSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHH-HHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHH
T ss_pred             cCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHH-HcCCCCcccccccccccccCchhcccccccccccc
Confidence            87 77665 3333    2  44467763    346788999996 77 999   8876532100                


Q ss_pred             ---------CC--------CcEEEEEeCCCC-CHHHHHHHHHHHHHHHHHcC
Q psy16848        449 ---------VG--------EEKIRLAPTPFH-TREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       449 ---------~~--------~~~iRl~~~~~~-t~e~id~~~~~l~~~l~~~~  482 (514)
                               ..        .+.+|++++..+ |++|+++++++|+++++++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~  415 (418)
T 2c81_A          364 RKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC  415 (418)
T ss_dssp             HCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence                     00        258999999999 99999999999999988754

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.8e-24  Score=226.31  Aligned_cols=335  Identities=11%  Similarity=0.036  Sum_probs=233.8

Q ss_pred             CChhHHHHHHHHHHHhCCCCC-CcCcccCcchHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhccc---cCCC
Q psy16848         30 VPKGGRKCLGEALEKFGTGAG-GTRNISGNSLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTLGK---MIPG  101 (514)
Q Consensus        30 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l~~---~~~g  101 (514)
                      +++.+.+++.+++..+..... .+....+..++.+++++++++++|.+    .+++++|||+|+..++.++..   ..+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g  155 (497)
T 3mc6_A           76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG  155 (497)
T ss_dssp             CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            467899999999988654322 12222244567778889999999876    467778889999999887743   1134


Q ss_pred             ---ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCc
Q psy16848        102 ---LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  178 (514)
Q Consensus       102 ---d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (514)
                         |.|+++.+.|.+...+++..|.+++.++.++ +                                            
T Consensus       156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~--------------------------------------------  190 (497)
T 3mc6_A          156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-T--------------------------------------------  190 (497)
T ss_dssp             CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-T--------------------------------------------
T ss_pred             CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-c--------------------------------------------
Confidence               8999999999999988888888776554321 0                                            


Q ss_pred             eEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCC
Q psy16848        179 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK  258 (514)
Q Consensus       179 ~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~  258 (514)
                                       .+                                            .-|.+.++    +...+
T Consensus       191 -----------------~~--------------------------------------------~~d~~~l~----~~i~~  205 (497)
T 3mc6_A          191 -----------------TY--------------------------------------------QVDLGKVK----KFINK  205 (497)
T ss_dssp             -----------------TC--------------------------------------------SBCTTTTG----GGCCS
T ss_pred             -----------------cC--------------------------------------------cCCHHHHH----HHHhh
Confidence                             00                                            00233333    33345


Q ss_pred             CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc---CCCCCCcc-ccCCCccCceEEEcCCcccc-cC
Q psy16848        259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY---GEHGAGIG-ERDGQLHNMDIISGTLGKAF-GN  333 (514)
Q Consensus       259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~---g~~~~~~~-~~~~~~~~~di~~~S~sK~l-g~  333 (514)
                      ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..   ...+.+.. +......+.|+++.|+||++ ++
T Consensus       206 ~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~  285 (497)
T 3mc6_A          206 NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAP  285 (497)
T ss_dssp             SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCC
T ss_pred             CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCC
Confidence            689999999999999999999999999999999999999983221   11111111 12222346899999999997 44


Q ss_pred             CC-eEEEecHHHHHHHHhhc-Cce--------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-
Q psy16848        334 IG-GYIVGTKNFIDTIRSYA-AGF--------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-  402 (514)
Q Consensus       334 ~G-G~l~~~~~~~~~l~~~~-~~~--------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  402 (514)
                      .| |+++.+++.+....... ..+        .+..+.+....++..++++.+...++.+..++..++++++.+.|++. 
T Consensus       286 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~  365 (497)
T 3mc6_A          286 KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI  365 (497)
T ss_dssp             SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45 88888766554332111 110        01112334445556666766666677888999999999999999994 


Q ss_pred             -CCcccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        403 -GFPVEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       403 -g~~~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                       |+.+.. +.++++.+..+. .+..++.+.|. ++||.+..+..      ...+|++++ .+|++++++++++|++++++
T Consensus       366 ~g~~~~~~~~~~~v~~~~~~-~~~~~l~~~L~-~~Gi~v~~~~~------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          366 PDLDIMGNPRYSVISFSSKT-LNIHELSDRLS-KKGWHFNALQK------PVALHMAFT-RLSAHVVDEICDILRTTVQE  436 (497)
T ss_dssp             TTCEECSCCCSSEEEEECTT-TTHHHHHHHHH-TTTCBCEECCS------SCCEEEECC-TTTTCTHHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCeeEEEEeCCC-CCHHHHHHHHH-hCCEEEecCCC------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHH
Confidence             887763 456677776543 45788999996 89998875443      236899998 78999999999999999988


Q ss_pred             cCC
Q psy16848        481 LDL  483 (514)
Q Consensus       481 ~~~  483 (514)
                      +..
T Consensus       437 ~~~  439 (497)
T 3mc6_A          437 LKS  439 (497)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            754

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.93  E-value=1.4e-23  Score=215.72  Aligned_cols=282  Identities=15%  Similarity=0.127  Sum_probs=198.2

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.+++++++||++|+..++.++..  +||+|+++.+.|.++...+..                  
T Consensus        55 ~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~--~gd~vi~~~~~~~~~~~~~~~------------------  114 (412)
T 2cb1_A           55 DPTAKALEERLKALEGALEAVVLASGQAATFAALLALLR--PGDEVVAAKGLFGQTIGLFGQ------------------  114 (412)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEETTCCHHHHHHHHH------------------
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchhHHHHHHH------------------
Confidence            467899999999999999899999999999999988865  999999999999887654321                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       115 --------------------------------------------------------------------------------  114 (412)
T 2cb1_A          115 --------------------------------------------------------------------------------  114 (412)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                .+...|.+++.++.+ .+.+++.+    ++++++|++++++||+|.+.|+++|.++|++||+++|+|++|
T Consensus       115 ----------~~~~~g~~~~~~~~~-~~~l~~~i----~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~  179 (412)
T 2cb1_A          115 ----------VLSLMGVTVRYVDPE-PEAVREAL----SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTF  179 (412)
T ss_dssp             ----------TTTTTTCEEEEECSS-HHHHHHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGG
T ss_pred             ----------HHHHcCCEEEEECCC-HHHHHHHh----ccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCC
Confidence                      011123344444432 33333333    456899999999999999999999999999999999999999


Q ss_pred             ccc-ccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEE-EecH---------------------------HHHH
Q psy16848        299 AVG-LYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYI-VGTK---------------------------NFID  346 (514)
Q Consensus       299 ~~g-~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l-~~~~---------------------------~~~~  346 (514)
                      +.+ ...         .....++|++++|+||+++++|   |++ +.++                           ++.+
T Consensus       180 ~~~~~~~---------~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  250 (412)
T 2cb1_A          180 GAAGALC---------RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPE  250 (412)
T ss_dssp             GTTTTSC---------CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHH
T ss_pred             ccccccC---------CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHH
Confidence            855 211         1112378999999999997533   444 4442                           3444


Q ss_pred             HHHhhc-CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--c--------------
Q psy16848        347 TIRSYA-AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE--H--------------  408 (514)
Q Consensus       347 ~l~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~--------------  408 (514)
                      .++... ...  +...++..++.+...++.+     .+..++..++.+++.+.|.+. ++..+  +              
T Consensus       251 ~~r~~~~~~~--g~~~~~~~a~~~~~~l~~l-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~  323 (412)
T 2cb1_A          251 RVRTLGLSLC--GMALSPFNAYLLFQGLETV-----ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKY  323 (412)
T ss_dssp             HHHHHHTTTT--CCCCCHHHHHHHHHHGGGH-----HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCChHHhHHHHcCCchH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHh
Confidence            444432 222  2244566555555544432     345666778889999999886 66533  1              


Q ss_pred             --CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEeccc---------CCCCCC--------------CCcEEEEEeCCCCC
Q psy16848        409 --TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPIN---------YPTVPV--------------GEEKIRLAPTPFHT  463 (514)
Q Consensus       409 --~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~---------~~~~~~--------------~~~~iRl~~~~~~t  463 (514)
                        ..++++.+.+ .  +...+.+.+ ++.||.+ .++         .|....              .++.+|++++..++
T Consensus       324 ~~~~~~iv~~~~-~--~~~~~~~~l-~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~  398 (412)
T 2cb1_A          324 LASGGPILTLDL-G--DLERASRFL-GAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDP  398 (412)
T ss_dssp             CSSSCSEEEEEC-S--SHHHHHHHH-HHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCH
T ss_pred             CCCCceEEEEEe-C--CHHHHHHHH-HhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCH
Confidence              2355888888 3  355666666 6899998 663         332111              15799999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        464 REMIDKFVTDLLA  476 (514)
Q Consensus       464 ~e~id~~~~~l~~  476 (514)
                      +++++.+.++|++
T Consensus       399 ~~~i~~l~~al~~  411 (412)
T 2cb1_A          399 LDLLALFEEALEA  411 (412)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=1.6e-24  Score=221.71  Aligned_cols=327  Identities=14%  Similarity=0.095  Sum_probs=226.5

Q ss_pred             ceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-c
Q psy16848         18 RVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-G   96 (514)
Q Consensus        18 ~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~   96 (514)
                      ..++|+..+...-.|++.+++.+++....         ++..+...++++.++++++.++.++++||++|+..++.++ .
T Consensus        30 ~~~id~~~~~~~~~~~v~~a~~~~~~~~~---------y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~  100 (399)
T 2oga_A           30 VPFLDLKAAYEELRAETDAAIARVLDSGR---------YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGI  100 (399)
T ss_dssp             BCSCCHHHHHHHTHHHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTC
T ss_pred             CcccccCcCCCCCCHHHHHHHHHHHhcCC---------CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCC
Confidence            35677754332223889999998887511         1223667899999999999988999999999999999888 5


Q ss_pred             ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848         97 KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH  176 (514)
Q Consensus        97 ~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (514)
                      .  +||.|+++.+.|.+...+++..|.+++.++.+. +                                          
T Consensus       101 ~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~------------------------------------------  135 (399)
T 2oga_A          101 G--PGDEVIVPSHTYIASWLAVSATGATPVPVEPHE-D------------------------------------------  135 (399)
T ss_dssp             C--TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS-S------------------------------------------
T ss_pred             C--CcCEEEECCCccHHHHHHHHHCCCEEEEEecCC-C------------------------------------------
Confidence            5  999999999999998888777777666543210 0                                          


Q ss_pred             CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848        177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD  256 (514)
Q Consensus       177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~  256 (514)
                                        ..                                             ..|.+.+++.+.   
T Consensus       136 ------------------~~---------------------------------------------~~d~~~l~~~i~---  149 (399)
T 2oga_A          136 ------------------HP---------------------------------------------TLDPLLVEKAIT---  149 (399)
T ss_dssp             ------------------SS---------------------------------------------SBCHHHHHHHCC---
T ss_pred             ------------------CC---------------------------------------------CcCHHHHHHhcC---
Confidence                              00                                             013444444443   


Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC--cccccCC
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--GKAFGNI  334 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg~~  334 (514)
                       +++++|+   ++||+|.+.++++|.++|+++|+++|+|++|+.|... .+.   . .+  .-.|++++|+  +|++++.
T Consensus       150 -~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~---~-~~--~~~di~~~S~~~sK~~~~~  218 (399)
T 2oga_A          150 -PRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGR---R-IG--AGSSVAAFSFYPGKNLGCF  218 (399)
T ss_dssp             -TTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTE---E-TT--CTTCEEEEECCTTSSSCCS
T ss_pred             -CCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCe---e-cc--cccCEEEEeCCCCccCCcC
Confidence             3577777   4678999999999999999999999999999966421 111   1 11  1258999999  6999874


Q ss_pred             --CeEEEec-HHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        335 --GGYIVGT-KNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       335 --GG~l~~~-~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                        ||+++.+ +++++.+.......          +++...++..++++.++++.+     ++..++.+++.+++.+.|++
T Consensus       219 G~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~  293 (399)
T 2oga_A          219 GDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL-----DSWNGRRSALAAEYLSGLAG  293 (399)
T ss_dssp             SCCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHTTT
T ss_pred             CceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcc
Confidence              4888875 78887776543211          122356778787777777644     23566677788888888888


Q ss_pred             C-CCcccc-C-CCc--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----------C---------CCcEEEE
Q psy16848        402 I-GFPVEH-T-PSH--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----------V---------GEEKIRL  456 (514)
Q Consensus       402 ~-g~~~~~-~-~~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----------~---------~~~~iRl  456 (514)
                      + ++.+.. + .+.  ++.+.+.. .+..++.+.|. ++||.++++......           .         ..+++|+
T Consensus       294 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi  371 (399)
T 2oga_A          294 LPGIGLPVTAPDTDPVWHLFTVRT-ERRDELRSHLD-ARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSL  371 (399)
T ss_dssp             CTTCBCCCCCTTEECCCSSEEEEC-SSHHHHHHHHH-HTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEE
T ss_pred             CCCccccCCCCCCcceeEEEEEEC-CCHHHHHHHHH-HCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEc
Confidence            6 665532 2 222  21133221 24678999995 899999864310000           0         0268999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        457 APTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       457 ~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +++..+|++|+++++++|+++++++.
T Consensus       372 ~~~~~~t~edi~~~~~~l~~~~~~l~  397 (399)
T 2oga_A          372 PIGPHLERPQALRVIDAVREWAERVD  397 (399)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988653

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.93  E-value=1.8e-24  Score=227.58  Aligned_cols=334  Identities=13%  Similarity=0.067  Sum_probs=230.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC-------cEEEEeccccccccchhhcccc-----
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE-------AGLVFTSCYVANDSTLFTLGKM-----   98 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------~~i~~~sGt~a~~~~l~~l~~~-----   98 (514)
                      +|.+.+++.+.+......+..   ..+..++.+++++++++++|.+       .++++++||+|+..++.++...     
T Consensus        69 ~~~v~~~l~~~~~~~~~~~~~---~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~  145 (502)
T 3hbx_A           69 EPECDKLIMSSINKNYVDMDE---YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR  145 (502)
T ss_dssp             CHHHHHHHHHTTTCBTTCTTT---CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhccCCCChhc---ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence            678888887766542222211   1123566778888999999987       3456889999998888776541     


Q ss_pred             -CCCc-----eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         99 -IPGL-----HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        99 -~~gd-----~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                       .+|+     .|+++.+.|.++..+++..|.+++.++.++..                                      
T Consensus       146 ~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~--------------------------------------  187 (502)
T 3hbx_A          146 KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGY--------------------------------------  187 (502)
T ss_dssp             HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTB--------------------------------------
T ss_pred             HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCc--------------------------------------
Confidence             1266     89999999999888888777766654431000                                      


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                              +                                            .-|.+.+++.+
T Consensus       188 ------------------------~--------------------------------------------~~d~~~l~~~i  199 (502)
T 3hbx_A          188 ------------------------Y--------------------------------------------VMDPQQAVDMV  199 (502)
T ss_dssp             ------------------------C--------------------------------------------SCCHHHHHHHC
T ss_pred             ------------------------C--------------------------------------------cCCHHHHHHHH
Confidence                                    0                                            00333333333


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc------CCEEEEeccccccc---cCCCCCCccccCCCccCceEE
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH------GALTFVDEVHAVGL---YGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~------gv~li~Dea~~~g~---~g~~~~~~~~~~~~~~~~di~  323 (514)
                          .+++++|++++++||+|.+.|+++|.++|+++      |+++++|++|+.+.   .......   ... ..+.|++
T Consensus       200 ----~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~---~~~-~~~~D~v  271 (502)
T 3hbx_A          200 ----DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW---DFR-LPLVKSI  271 (502)
T ss_dssp             ----CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC---STT-STTEEEE
T ss_pred             ----hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc---ccC-CCCceEE
Confidence                45688999999999999999999999999999      99999999998443   1222110   111 3478999


Q ss_pred             EcCCccccc-CCC-eEEEec-HHHHHHHHhhcCc--------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFG-NIG-GYIVGT-KNFIDTIRSYAAG--------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       324 ~~S~sK~lg-~~G-G~l~~~-~~~~~~l~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      .+|.||+++ +.| |+++.+ ++.+.........        +.+..+.+.....+..+++..+..+++.++.++..+++
T Consensus       272 ~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a  351 (502)
T 3hbx_A          272 NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENM  351 (502)
T ss_dssp             EEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999984 445 766554 4444222111111        11112223334455556666655567778899999999


Q ss_pred             HHHHHHHHhCC-CccccC--CCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        393 AYLRNELIQIG-FPVEHT--PSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       393 ~~l~~~L~~~g-~~~~~~--~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      +++.+.|++.+ +.+..+  ..+++.+.+++.  .+..++.+.|. ++||.+.....+....+..++|++++..+|++++
T Consensus       352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edi  430 (502)
T 3hbx_A          352 IVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR-RYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLA  430 (502)
T ss_dssp             HHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred             HHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHH-hCCcEEeeccCCcccCCceEEEEEeCCCCCHHHH
Confidence            99999999984 777654  567888888642  34568999995 9999987655544444567999999999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q psy16848        468 DKFVTDLLAVWKSLD  482 (514)
Q Consensus       468 d~~~~~l~~~l~~~~  482 (514)
                      +++++.|++++++++
T Consensus       431 d~li~~L~~~l~~l~  445 (502)
T 3hbx_A          431 ERLVIDIEKVMRELD  445 (502)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.93  E-value=1.9e-24  Score=226.48  Aligned_cols=342  Identities=15%  Similarity=0.145  Sum_probs=228.3

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHH-hCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCc-----EEEEeccccccc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEK-FGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEA-----GLVFTSCYVAND   89 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~-----~i~~~sGt~a~~   89 (514)
                      ..|++....-..+|.+.+++.+.+.. |..+++++++..+.   .++.+.+++++++++|.+.     .++++||++++.
T Consensus        45 ~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~  124 (483)
T 1rv3_A           45 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANF  124 (483)
T ss_dssp             SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             cCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHH
Confidence            34665332223478899998888764 22122222222221   3444556699999999763     378899998888


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++.+  |||+|+++++.|.+.+..........+.                                          
T Consensus       125 ~~~~all~--pGD~Vl~~~~~~~~~~~~~~~~~~~~v~------------------------------------------  160 (483)
T 1rv3_A          125 AVYTALVE--PHGRIMGLDLPDGGHLTHGFMTDKKKIS------------------------------------------  160 (483)
T ss_dssp             HHHHHHTC--TTCEEEEECGGGTCCGGGCCBCSSCBCS------------------------------------------
T ss_pred             HHHHHhcC--CCCEEEEecCccCcCcchhhhhcccCcc------------------------------------------
Confidence            88888866  9999999999998886432111000000                                          


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCC--CCEEEec------
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSS--APKIIYR------  241 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g--~~~~~v~------  241 (514)
                                                                                    ..|  .+.++++      
T Consensus       161 --------------------------------------------------------------~~G~~~~~v~~~~~~~~~  178 (483)
T 1rv3_A          161 --------------------------------------------------------------ATSIFFESMAYKVNPDTG  178 (483)
T ss_dssp             --------------------------------------------------------------HHHHHSEEEEECBCTTTC
T ss_pred             --------------------------------------------------------------cccceEEEEECccccCCC
Confidence                                                                          000  1122221      


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCce
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMD  321 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~d  321 (514)
                      ..|++.+++.+.+   +++++|++ +++|++ .+.|+++|.++|+++|+++|+|++|..|.....   ... .. ....|
T Consensus       179 ~iD~d~le~~i~~---~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~---~~~-~p-~~~~d  248 (483)
T 1rv3_A          179 YIDYDRLEENARL---FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAG---VVP-SP-FEHCH  248 (483)
T ss_dssp             SBCHHHHHHHHHH---HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT---SSC-CG-GGTCS
T ss_pred             cCCHHHHHHHHhh---cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccC---CCC-CC-CCCCc
Confidence            1266777777763   24789988 888888 889999999999999999999999986543110   000 00 12579


Q ss_pred             EEEcCCcccc-cCCCeEEEecHH---------------HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848        322 IISGTLGKAF-GNIGGYIVGTKN---------------FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR  385 (514)
Q Consensus       322 i~~~S~sK~l-g~~GG~l~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  385 (514)
                      ++++|+||++ |+.||+++++++               +.+.+........ ..+.+...+++...+++.....++++++
T Consensus       249 iv~~s~~K~l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~-~g~~~~~~iaal~~Al~~~~~~~~~~~~  327 (483)
T 1rv3_A          249 VVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAMTPEFKEYQ  327 (483)
T ss_dssp             EEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             EEEecCcccCCCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcc-cCCccHHHHHHHHHHHHHHhChhHHHHH
Confidence            9999999998 556799988764               3344433221111 2234455566666778776555678899


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccCC--CcEEEEEeCC-CccHHHHHHHHHHhCCeEEe----cccCCCCCCCCcEEEEEe
Q psy16848        386 AKHQDIVAYLRNELIQIGFPVEHTP--SHIIPIKIGN-PALNTKICDMLLKEKGHYVQ----PINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~----~~~~~~~~~~~~~iRl~~  458 (514)
                      +++.++++++.+.|.+.|+.+..+.  ..++++.+.. +.+..++.+.| ++.||.+.    |+..+  +.+.+++|+++
T Consensus       328 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L-~~~gI~v~~~~~pg~~~--~~~~~~iRis~  404 (483)
T 1rv3_A          328 RQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVL-EACSIACNKNTCPGDKS--ALRPSGLRLGT  404 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHH-HHTTEECEEECCSSCSC--TTSCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHH-HhCCcEEecCCCCCCCc--CCCCceEEeec
Confidence            9999999999999999888876542  2456666643 23566777777 58999998    65532  22467999999


Q ss_pred             CCCCC----HHHHHHHHHHHHHHHHH
Q psy16848        459 TPFHT----REMIDKFVTDLLAVWKS  480 (514)
Q Consensus       459 ~~~~t----~e~id~~~~~l~~~l~~  480 (514)
                      +..+|    ++|+++++++|+++++.
T Consensus       405 ~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          405 PALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCHHHHHHHHHHHHHHHHh
Confidence            85445    99999999999999875

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.92  E-value=1.5e-23  Score=212.15  Aligned_cols=313  Identities=15%  Similarity=0.110  Sum_probs=218.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc---cccCCCceEEec
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL---GKMIPGLHYISD  107 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l---~~~~~gd~v~~~  107 (514)
                      +|++.+++.+++... .  ..      ..+...++++.+++++|.+++++++|||+|+..++.++   .+  +||.|+++
T Consensus        12 ~~~v~~a~~~~~~~~-~--~~------~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~--~gd~Vl~~   80 (375)
T 2fnu_A           12 DKEDKKAVLEVLNSK-Q--LT------QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSA--DRNEIITT   80 (375)
T ss_dssp             CHHHHHHHHHHHTSS-C--CS------SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCT--TSCEEEEC
T ss_pred             CHHHHHHHHHHHHcC-c--cc------CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCC--CCCEEEEC
Confidence            789999999988641 1  11      13567899999999999988888999999999999888   55  99999999


Q ss_pred             CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848        108 AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       108 ~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|.+...+++..|.+++.++.+. +                          +                          
T Consensus        81 ~~~~~~~~~~~~~~g~~~~~~~~~~-~--------------------------~--------------------------  107 (375)
T 2fnu_A           81 PISFVATANMLLESGYTPVFAGIKN-D--------------------------G--------------------------  107 (375)
T ss_dssp             SSSCTHHHHHHHHTTCEEEECCBCT-T--------------------------S--------------------------
T ss_pred             CCccHhHHHHHHHCCCEEEEeccCC-C--------------------------C--------------------------
Confidence            9999999988887777776554310 0                          0                          


Q ss_pred             ccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEec
Q psy16848        188 VGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET  267 (514)
Q Consensus       188 ~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~  267 (514)
                                                                            ..|.+.+++    ..+++++++++++
T Consensus       108 ------------------------------------------------------~~d~~~l~~----~i~~~~~~v~~~~  129 (375)
T 2fnu_A          108 ------------------------------------------------------NIDELALEK----LINERTKAIVSVD  129 (375)
T ss_dssp             ------------------------------------------------------SBCGGGSGG----GCCTTEEEEEEEC
T ss_pred             ------------------------------------------------------CCCHHHHHh----hcCcCceEEEEeC
Confidence                                                                  002333333    2334678887776


Q ss_pred             CCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccCCC-eEEEe-c-H
Q psy16848        268 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGNIG-GYIVG-T-K  342 (514)
Q Consensus       268 ~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~~G-G~l~~-~-~  342 (514)
                      +   +|.+.|+++|.++|++||+++|+|++|+++... .+    ...+.  -.|+++.|+|  |++++ | |+++. + +
T Consensus       130 ~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~----~~~~~--~~~i~~~s~s~~K~~~~-g~g~~~~~~~~  198 (375)
T 2fnu_A          130 Y---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEY-QN----KKVGG--FALASVFSFHAIKPITT-AEGGAVVTNDS  198 (375)
T ss_dssp             G---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TT----EETTS--SSSEEEEECCTTSSSCC-SSCEEEEESCH
T ss_pred             C---cCCccCHHHHHHHHHHcCCEEEEECccccCCeE-CC----eeccc--cCCeEEEeCCCCCCccc-cCceEEEeCCH
Confidence            6   899999999999999999999999999966431 11    01111  1256666776  99987 6 66655 4 6


Q ss_pred             HHHHHHHhhcCce--------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        343 NFIDTIRSYAAGF--------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       343 ~~~~~l~~~~~~~--------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      ++++.+.......              .+....++..++++...+     +.+++..++.+++++++.+.|+++ ++.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  273 (375)
T 2fnu_A          199 ELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL-----KKAPFLMQKREEAALTYDRIFKDNPYFTPL  273 (375)
T ss_dssp             HHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred             HHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            7877776543211              111234555444443332     345678888999999999999987 66654


Q ss_pred             cC-----CC-cEEEEEeCCC-c-cHHHHHHHHHHhCCeEEecccCCC--------------CC----CCCcEEEEEeCCC
Q psy16848        408 HT-----PS-HIIPIKIGNP-A-LNTKICDMLLKEKGHYVQPINYPT--------------VP----VGEEKIRLAPTPF  461 (514)
Q Consensus       408 ~~-----~~-~~~~i~l~~~-~-~~~~~~~~Ll~~~GI~v~~~~~~~--------------~~----~~~~~iRl~~~~~  461 (514)
                      .+     .. .++++.++.. . +..++.+.|. ++||.++....+.              .+    ...+++|++++..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~  352 (375)
T 2fnu_A          274 HPLLKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHAN  352 (375)
T ss_dssp             GGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTT
T ss_pred             CCCCCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCC
Confidence            33     12 2456666642 2 5778999995 8999998321111              00    0126899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHcC
Q psy16848        462 HTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +|++|+++++++|++++++++
T Consensus       353 ~t~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          353 LNLESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999988764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.92  E-value=2.8e-25  Score=226.75  Aligned_cols=276  Identities=13%  Similarity=0.116  Sum_probs=197.3

Q ss_pred             HHHHHHHHhHcC-------CC-cEEEEeccccccccchhhccccCCCc----eEEecCccchhhhhhhhcCCCCeeeccC
Q psy16848         63 EKLEEDVAKLHQ-------KE-AGLVFTSCYVANDSTLFTLGKMIPGL----HYISDAGNHASMIQGIRNSSAPKIIYRH  130 (514)
Q Consensus        63 ~~~~~~la~~~~-------~~-~~i~~~sGt~a~~~~l~~l~~~~~gd----~v~~~~~~h~~~~~~~~~~~~~~~~~~~  130 (514)
                      .++++.++++++       .+ ..++++++++++..++.++..  +||    .|+++.++|......++..|.+++.++.
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~  148 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEG  148 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecC
Confidence            667777777765       22 344445556778888888866  999    9999999999998888887777665433


Q ss_pred             CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHH
Q psy16848        131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  210 (514)
Q Consensus       131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~  210 (514)
                      +                                                                               
T Consensus       149 d-------------------------------------------------------------------------------  149 (391)
T 3bwn_A          149 D-------------------------------------------------------------------------------  149 (391)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             HHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCC
Q psy16848        211 ISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  290 (514)
Q Consensus       211 ~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv  290 (514)
                                                     .++++          .++++++++++|+||||.+++  +|.+.++.+++
T Consensus       150 -------------------------------~~~l~----------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~  186 (391)
T 3bwn_A          150 -------------------------------AWGFD----------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEA  186 (391)
T ss_dssp             -------------------------------STTCC----------CCSCEEEEEESSCTTTCCCCC--CCC-----CCC
T ss_pred             -------------------------------HHHcC----------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCC
Confidence                                           00111          135789999999999999997  44442222339


Q ss_pred             EEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHH
Q psy16848        291 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVL  366 (514)
Q Consensus       291 ~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~  366 (514)
                      ++|+||+|..+    ....+   .. ..+.+++++||||.+|.+|   ||+++ ++++++.+.......  ..+.+.+.+
T Consensus       187 ~ii~De~y~~~----~~~~l---~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~--~~~~~~~~q  256 (391)
T 3bwn_A          187 KVIHDFAYYWP----HYTPI---TR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVN--SIGVSKESQ  256 (391)
T ss_dssp             EEEEECTTCST----TTSCC---CC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHH--HSSCCHHHH
T ss_pred             EEEEeCCCCCC----CCCcc---cc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhccc--ccCCCHHHH
Confidence            99999999731    11111   11 3467899999999999778   99987 889988887765433  336788888


Q ss_pred             HHHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHHHHhC-CCccccCC--------------CcEEEEEeCCCc
Q psy16848        367 AGAREAIRILS---------SQEGVELRAKHQDIVAYLRNELIQI-GFPVEHTP--------------SHIIPIKIGNPA  422 (514)
Q Consensus       367 ~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--------------~~~~~i~l~~~~  422 (514)
                      .++.++++...         +.+++++++.++++++++.+.|++. ++.+..+.              +.++++.+++. 
T Consensus       257 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-  335 (391)
T 3bwn_A          257 VRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-  335 (391)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS-
T ss_pred             HHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH-
Confidence            88888887542         4578889999999999999999987 55543322              22567777642 


Q ss_pred             cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       423 ~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                        ..+.+.| +++||.+.++..|..  +.+++|++++  .+++++++++++|++++++
T Consensus       336 --~~~~~~l-~~~gV~v~pg~~fg~--~~~~iRis~~--~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          336 --TDLVSEL-RRHKVMSRAGERCGS--DKKHVRVSML--SREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             --CCHHHHH-HHTTEECEEGGGGTC--CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred             --HHHHHHH-HHCCEEEccCCCCCC--CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence              2444555 689999999987643  4679999998  4889999999999887654

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.92  E-value=3.1e-24  Score=217.00  Aligned_cols=307  Identities=15%  Similarity=0.098  Sum_probs=216.5

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~  109 (514)
                      .|++.+++.+.+....         +...+...++++.+++++|.+++++++|||+|+..++.++ .+  +||+|+++.+
T Consensus        15 ~~~v~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~--~gd~Vi~~~~   83 (367)
T 3nyt_A           15 KDKIDAGIQRVLRHGQ---------YILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVG--PGDEVITPGF   83 (367)
T ss_dssp             HHHHHHHHHHHHHHCC---------CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHhcCC---------ccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCC--CcCEEEECCC
Confidence            3567777777766421         1234678899999999999999999999999999999888 44  9999999999


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +|.++..+++..|.+++.++.+. +                                                       
T Consensus        84 ~~~~~~~~~~~~G~~~~~~~~~~-~-------------------------------------------------------  107 (367)
T 3nyt_A           84 TYVATAETVALLGAKPVYVDIDP-R-------------------------------------------------------  107 (367)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------------------
T ss_pred             ccHHHHHHHHHcCCEEEEEecCC-c-------------------------------------------------------
Confidence            99999988888777766554310 0                                                       


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                           ..                                             ..|.+.+    ++..++++++|+   ++
T Consensus       108 -----~~---------------------------------------------~~d~~~l----~~~i~~~~~~v~---~~  130 (367)
T 3nyt_A          108 -----TY---------------------------------------------NLDPQLL----EAAITPRTKAII---PV  130 (367)
T ss_dssp             -----TC---------------------------------------------SBCGGGT----GGGCCTTEEEEC---CB
T ss_pred             -----cC---------------------------------------------CcCHHHH----HHhcCcCCcEEE---ee
Confidence                 00                                             0023333    333345678877   66


Q ss_pred             CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC--cccccCC--CeEEEe-cHHH
Q psy16848        270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--GKAFGNI--GGYIVG-TKNF  344 (514)
Q Consensus       270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg~~--GG~l~~-~~~~  344 (514)
                      ||+|...++++|.++|+++|+++|+|++|++|... .+.    ..+. .+ |++++||  +|++++.  ||+++. ++++
T Consensus       131 ~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~-~~~----~~~~-~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l  203 (367)
T 3nyt_A          131 SLYGQCADFDAINAIASKYGIPVIEDAAQSFGASY-KGK----RSCN-LS-TVACTSFFPSAPLGCYGDGGAIFTNDDEL  203 (367)
T ss_dssp             CGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEE-TTE----ETTS-SS-SEEEEECCTTSSSCCSSCCEEEEESCHHH
T ss_pred             CCccChhhHHHHHHHHHHcCCEEEEECccccCCeE-CCe----eccC-CC-CEEEEECCCCCcCCCcCceeEEEeCCHHH
Confidence            79999999999999999999999999999976531 111    1111 12 8888897  8999874  488877 4778


Q ss_pred             HHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC-CC--
Q psy16848        345 IDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT-PS--  411 (514)
Q Consensus       345 ~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~--  411 (514)
                      .+.+.......          +++..+++..++++...++.+     ++..++.+++.+++.+.|++.++.+... .+  
T Consensus       204 ~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~-----~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  278 (367)
T 3nyt_A          204 ATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF-----EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNI  278 (367)
T ss_dssp             HHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEE
T ss_pred             HHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCc
Confidence            77776543321          124567888888877777643     3466777888889999998886544221 11  


Q ss_pred             ---cEEEEEeCCCccHHHHHHHHHHhCCeEEecccC-CC-----C--CC---------CCcEEEEEeCCCCCHHHHHHHH
Q psy16848        412 ---HIIPIKIGNPALNTKICDMLLKEKGHYVQPINY-PT-----V--PV---------GEEKIRLAPTPFHTREMIDKFV  471 (514)
Q Consensus       412 ---~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~-~~-----~--~~---------~~~~iRl~~~~~~t~e~id~~~  471 (514)
                         .++.+.++   +..++.+.|. ++||.++.+.. +.     .  ..         ..+.+|++++..+|++|+++++
T Consensus       279 ~~~~~~~~~~~---~~~~l~~~L~-~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~  354 (367)
T 3nyt_A          279 SVYAQYTVRMD---NRESVQASLK-AAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIIC  354 (367)
T ss_dssp             CCCSSEEEECS---SHHHHHHHHH-HHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred             eeeEEEEEEeC---CHHHHHHHHH-HCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence               13445554   3678888884 89999876542 11     0  00         1368999999999999999999


Q ss_pred             HHHHHH
Q psy16848        472 TDLLAV  477 (514)
Q Consensus       472 ~~l~~~  477 (514)
                      +.+++.
T Consensus       355 ~~~~~~  360 (367)
T 3nyt_A          355 AALTNL  360 (367)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            998753

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.92  E-value=2e-23  Score=211.68  Aligned_cols=329  Identities=15%  Similarity=0.094  Sum_probs=222.9

Q ss_pred             eecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHH-HhHcC-CCcEEEEeccccccccchhhc-cc
Q psy16848         21 CRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDV-AKLHQ-KEAGLVFTSCYVANDSTLFTL-GK   97 (514)
Q Consensus        21 ~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~-~~~~i~~~sGt~a~~~~l~~l-~~   97 (514)
                      |.+...++...|++.+++.+.++. +.       ...+.+...++++.+ ++++| .+++++++|||+|+..++.++ .+
T Consensus         5 i~~~~p~~~~~~~i~~a~~~~~~~-~~-------~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~   76 (377)
T 3ju7_A            5 IPFLRASTVPVIEYLDELKEIDAS-HI-------YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRK   76 (377)
T ss_dssp             BCSCCCCCCCGGGGHHHHHHHHHH-TC-------CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCT
T ss_pred             eeccCCCCCCcHHHHHHHHHHHHc-CC-------cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCC
Confidence            555555565678899999999886 21       111236678999999 99999 889999999999999998887 44


Q ss_pred             cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC
Q psy16848         98 MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG  177 (514)
Q Consensus        98 ~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
                        +||+|+++.++|.++..+++..|++++.++.+. +                                           
T Consensus        77 --~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~-------------------------------------------  110 (377)
T 3ju7_A           77 --KGKYALMPSFTFPATPLAAIWCGLEPYFIDISI-D-------------------------------------------  110 (377)
T ss_dssp             --TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------
T ss_pred             --CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-c-------------------------------------------
Confidence              999999999999999988888887776554310 0                                           


Q ss_pred             ceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC
Q psy16848        178 ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  257 (514)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~  257 (514)
                                       ..                                             ..|.+.+++.+.... 
T Consensus       111 -----------------~~---------------------------------------------~~d~~~l~~~i~~~~-  127 (377)
T 3ju7_A          111 -----------------DW---------------------------------------------YMDKTVLWDKIEELK-  127 (377)
T ss_dssp             -----------------TC---------------------------------------------SBCHHHHHHHHHHHG-
T ss_pred             -----------------cC---------------------------------------------CcCHHHHHHHHhcCC-
Confidence                             00                                             014455555442110 


Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CCe
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IGG  336 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~GG  336 (514)
                      +++++|+   ++|++|...++++|.++|+ ||+++|+|++|++|.... +.   ...+...+.+++.++.+|.+++ .||
T Consensus       128 ~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~---~~g~~~~d~~~~S~~~~K~l~~g~gG  199 (377)
T 3ju7_A          128 EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNG-GM---HYGQDFSGMIIYSFHATKPFGIGEGG  199 (377)
T ss_dssp             GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEET-TE---ETTTTCSSEEEEECBTTSSSCCBSCE
T ss_pred             CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeEC-CE---eccCCCCcEEEEECCCCCcCCCCCcE
Confidence            1267776   5678999999999999999 999999999999765311 10   1101111344444445799976 237


Q ss_pred             EEEe-cHHHHHHHHhhcCc----------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC--
Q psy16848        337 YIVG-TKNFIDTIRSYAAG----------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG--  403 (514)
Q Consensus       337 ~l~~-~~~~~~~l~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--  403 (514)
                      +++. ++++.+.++.....          .++...++...++.+...++.+     ++..++.+++.+++.+.|++.+  
T Consensus       200 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l-----~~~~~~~~~~~~~~~~~L~~~~~~  274 (377)
T 3ju7_A          200 LIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW-----DDKLKERTRISEWYKQLLQSNGLM  274 (377)
T ss_dssp             EEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCc
Confidence            7765 56777777654431          1234567777777777766533     3467777888888888888873  


Q ss_pred             -CccccCCC-----cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC---------C---------CCcEEEEEeC
Q psy16848        404 -FPVEHTPS-----HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP---------V---------GEEKIRLAPT  459 (514)
Q Consensus       404 -~~~~~~~~-----~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~---------~---------~~~~iRl~~~  459 (514)
                       +.+....+     .++.+.+++..+.+++.+.| +++||.++.+..+...         .         ..+.+|++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~  353 (377)
T 3ju7_A          275 KKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW  353 (377)
T ss_dssp             TTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC
T ss_pred             cccccCCCCCcceEEEEEEEeCChhhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC
Confidence             22322111     14456666544578899999 5999999865521100         0         1368999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..+|++|++++++.|++++..
T Consensus       354 ~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          354 EGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             TTCCHHHHHHHHHHHTC----
T ss_pred             CCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999887754

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.92  E-value=1.2e-24  Score=227.12  Aligned_cols=354  Identities=15%  Similarity=0.109  Sum_probs=216.2

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l   95 (514)
                      .|..|+|+.+..+.  |++.+++.+++.. +.      ..++..+...+++++++++++.+++++++|||+|+..++.++
T Consensus        39 ~~~~ylD~~~~~~~--~~v~~a~~~~l~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~  109 (467)
T 2oqx_A           39 SEDVFIDLLTDSGT--GAVTQSMQAAMMR-GD------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVL  109 (467)
T ss_dssp             GGGCSEECSCCSSC--SCCCHHHHHHTTS-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHH
T ss_pred             CCCeeEecccCCCc--HHHHHHHHHHhcc-Cc------ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHH
Confidence            45567888655444  8899988887653 11      123444667899999999999999999999999999999888


Q ss_pred             cccCC-----C----ceEEecCccchhhhh-hhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         96 GKMIP-----G----LHYISDAGNHASMIQ-GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        96 ~~~~~-----g----d~v~~~~~~h~~~~~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      ..  +     |    |+|+++ .+|..... .....++.++......                        +        
T Consensus       110 ~~--~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~------------------------~--------  154 (467)
T 2oqx_A          110 IK--KREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKE------------------------A--------  154 (467)
T ss_dssp             HH--HHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTT------------------------T--------
T ss_pred             hc--cccccCCCCccceEEec-ccccccchhhhhccCcceeeccccc------------------------c--------
Confidence            65  6     7    888877 56644322 2222333222100000                        0        


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCC
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HND  244 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d  244 (514)
                                      ++                                                 .. ...... ..|
T Consensus       155 ----------------~~-------------------------------------------------~~-~~~~~~~~~d  168 (467)
T 2oqx_A          155 ----------------FD-------------------------------------------------TG-VRYDFKGNFD  168 (467)
T ss_dssp             ----------------TC-------------------------------------------------TT-SCCTTTTCBC
T ss_pred             ----------------cc-------------------------------------------------CC-CCCCccCCcC
Confidence                            00                                                 00 000000 126


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCC-ccccC---HHHHHHHHHHcCCEEEEeccccc-ccc-------CCCCCCccc
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMT-GAICP---LKELCEVSHQHGALTFVDEVHAV-GLY-------GEHGAGIGE  312 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~npt-G~~~~---l~~l~~l~~~~gv~li~Dea~~~-g~~-------g~~~~~~~~  312 (514)
                      .+.+++.+++...+++++|++++++||+ |.+++   +++|+++|++||+++|+|+++.. +.+       +..+.....
T Consensus       169 ~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~  248 (467)
T 2oqx_A          169 LEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQ  248 (467)
T ss_dssp             HHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHH
T ss_pred             HHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHH
Confidence            7778888875322358999999999997 88777   78999999999999999988765 321       122211111


Q ss_pred             cCC-CccCceEEEcCCcccccCC-CeEEEecHH-HHH---HHHhhc---CceEeccCCcHHHHHHHHHHHHHhhhchHHH
Q psy16848        313 RDG-QLHNMDIISGTLGKAFGNI-GGYIVGTKN-FID---TIRSYA---AGFIFTTSLPPTVLAGAREAIRILSSQEGVE  383 (514)
Q Consensus       313 ~~~-~~~~~di~~~S~sK~lg~~-GG~l~~~~~-~~~---~l~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  383 (514)
                      ... .....|++++|+||+++.+ ||+++++++ +++   .+....   .+.......+...++++...++...+   ++
T Consensus       249 ~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~  325 (467)
T 2oqx_A          249 ITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LD  325 (467)
T ss_dssp             HHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HH
T ss_pred             HhhhhhccCCeEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HH
Confidence            100 0023677888999999875 788888766 443   333221   11100112222222222222232211   12


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccCCCcEEEEEeCC---Ccc-----HHHHHHHHHHhCCeEEecccCC-CC-------
Q psy16848        384 LRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGN---PAL-----NTKICDMLLKEKGHYVQPINYP-TV-------  447 (514)
Q Consensus       384 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~i~l~~---~~~-----~~~~~~~Ll~~~GI~v~~~~~~-~~-------  447 (514)
                      ..++..++.+++.+.|++.++++.+..+.++++.++.   ..+     ..++++.|+.++||.+.++..+ ..       
T Consensus       326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~  405 (467)
T 2oqx_A          326 WLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGK  405 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCeeecCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccc
Confidence            4455677888999999888777662244566666631   111     4456888844899999874421 11       


Q ss_pred             --CCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcC
Q psy16848        448 --PVGEEKIRLAPTPF-HTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       448 --~~~~~~iRl~~~~~-~t~e~id~~~~~l~~~l~~~~  482 (514)
                        ....+++|++++.. ++++++++++++|++++++.+
T Consensus       406 ~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence              11247999999988 999999999999999998754

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.92  E-value=3.7e-24  Score=219.11  Aligned_cols=284  Identities=17%  Similarity=0.122  Sum_probs=197.3

Q ss_pred             hHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      +...++++++++++|.++.++++||++|+..++. +.+  +||+|+++.+.|.++...+.                    
T Consensus        67 p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~--~gd~Vl~~~~~y~~~~~~~~--------------------  123 (403)
T 3cog_A           67 PTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLK--AGDQIICMDDVYGGTNRYFR--------------------  123 (403)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSC--TTCEEEEESSCCHHHHHHHH--------------------
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC--CCCEEEEeCCCcchHHHHHH--------------------
Confidence            5678999999999998889999999998888887 655  99999999999988654321                    


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (403)
T 3cog_A          124 --------------------------------------------------------------------------------  123 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC-CEEEEeccc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG-ALTFVDEVH  298 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g-v~li~Dea~  298 (514)
                              ..+...|.+++.++.+|.+.+++.++    +++++|++++++||+|.++|+++|.++|+++| +++|+|++|
T Consensus       124 --------~~~~~~G~~v~~v~~~d~~~l~~~i~----~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~  191 (403)
T 3cog_A          124 --------QVASEFGLKISFVDCSKIKLLEAAIT----PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF  191 (403)
T ss_dssp             --------HTGGGGTCEEEEECTTSHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTT
T ss_pred             --------HHHHHcCCEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCC
Confidence                    01122345555666555555555543    46899999999999999999999999999999 999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+....      + .  ..++|+++.|+||+++++|    |+++++ +++++.+......+  +...++..+.++...+
T Consensus       192 ~~~~~~~------~-~--~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~--g~~~~~~~~~~~~~~l  260 (403)
T 3cog_A          192 MSPYFQR------P-L--ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL--GAVPSPIDCYLCNRGL  260 (403)
T ss_dssp             TCTTTCC------T-T--TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_pred             cccccCC------c-c--ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhh
Confidence            9654321      1 1  2368999999999997533    898884 78888887655444  3456777777776666


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC---------------CCcccc----CCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI---------------GFPVEH----TPSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~----~~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +.+     ....++..++...+.+.|++.               ++.+..    ..++++.+.++..  ..+..+.+ ++
T Consensus       261 ~~l-----~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~l-~~  332 (403)
T 3cog_A          261 KTL-----HVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT--LQHAEIFL-KN  332 (403)
T ss_dssp             TTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC--HHHHHHHH-HH
T ss_pred             hHH-----HHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC--HHHHHHHH-Hh
Confidence            533     234455555555666666543               222221    2367888887643  23444444 57


Q ss_pred             CCeEEeccc---------CCC------C--------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        435 KGHYVQPIN---------YPT------V--------PVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       435 ~GI~v~~~~---------~~~------~--------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .||.+...+         .|.      .        ...++.+|++++..+++++++.+.++|+++
T Consensus       333 ~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~  398 (403)
T 3cog_A          333 LKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA  398 (403)
T ss_dssp             CSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            888654321         111      0        112579999999877777777777777654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.92  E-value=4.2e-24  Score=217.85  Aligned_cols=312  Identities=17%  Similarity=0.191  Sum_probs=216.3

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~  109 (514)
                      .+++.+++.+.+.....       . +..+...++++.++++++.+++++++|||+|+..++.++ ..  +||.|+++.+
T Consensus        35 ~~~~~~a~~~~~~~~~~-------~-~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~--~gd~vl~~~~  104 (391)
T 3dr4_A           35 DGNERDYVLECMDTTWI-------S-SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIG--PGDEVIVPSL  104 (391)
T ss_dssp             CSSHHHHHHHHHHHTCC-------S-SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHHcCCc-------c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            47888888888875211       1 234778999999999999999999999999999999888 55  9999999999


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +|.+...+++..|.+++.++.+. +                                                       
T Consensus       105 ~~~~~~~~~~~~g~~~~~~~~~~-~-------------------------------------------------------  128 (391)
T 3dr4_A          105 TYIASANSVTYCGATPVLVDNDP-R-------------------------------------------------------  128 (391)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCT-T-------------------------------------------------------
T ss_pred             chHHHHHHHHHCCCEEEEEecCc-c-------------------------------------------------------
Confidence            99999988888777776554320 0                                                       


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                           ..                                             .-|.+.++    +..++++++++   ++
T Consensus       129 -----~~---------------------------------------------~~d~~~l~----~~~~~~~~~v~---~~  151 (391)
T 3dr4_A          129 -----TF---------------------------------------------NLDAAKLE----ALITPRTKAIM---PV  151 (391)
T ss_dssp             -----TC---------------------------------------------SBCGGGSG----GGCCTTEEEEC---CB
T ss_pred             -----cc---------------------------------------------CcCHHHHH----HhcCCCceEEE---EE
Confidence                 00                                             00223322    23334677777   45


Q ss_pred             CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEec-HHHH
Q psy16848        270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGT-KNFI  345 (514)
Q Consensus       270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~-~~~~  345 (514)
                      ||+|...++++|.++|+++|+++|+|++|+.|.....     ...+.  -.|+.+.||+  |++++ .||+++.+ +++.
T Consensus       152 n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~--~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~  224 (391)
T 3dr4_A          152 HLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRG-----KKSGS--LGDCATFSFFGNAIITTGEGGMITTNDDDLA  224 (391)
T ss_dssp             CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT-----EETTS--SSSEEEEECBTTSSSCCBSCEEEEESCHHHH
T ss_pred             CCCCChhhHHHHHHHHHHcCCEEEEECcccccceECC-----eeecc--cCCEEEEECCCCCcCCcCCeEEEEECCHHHH
Confidence            7999999999999999999999999999996653110     01111  1356666654  99975 33787765 5576


Q ss_pred             HHHHhhcCce------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC----
Q psy16848        346 DTIRSYAAGF------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT----  409 (514)
Q Consensus       346 ~~l~~~~~~~------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----  409 (514)
                      +.+.......            ++...++...+++....++     .+++..++.+++.+++.+.|++.++.+..+    
T Consensus       225 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  299 (391)
T 3dr4_A          225 AKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLE-----RVDEHLAARERVVGWYEQKLARLGNRVTKPHVAL  299 (391)
T ss_dssp             HHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCT
T ss_pred             HHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCC
Confidence            6665433211            1123445555554444433     345677888889999999998877665433    


Q ss_pred             --C--CcEEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCC--C---------------CCCcEEEEEeCCCCCHHH
Q psy16848        410 --P--SHIIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTV--P---------------VGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       410 --~--~~~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~---------------~~~~~iRl~~~~~~t~e~  466 (514)
                        .  ..++.+.+++  +.+..++.+.|. ++||.++++..+..  +               ...+.+|++++..+|++|
T Consensus       300 ~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ed  378 (391)
T 3dr4_A          300 TGRHVFWMYTVRLGEGLSTTRDQVIKDLD-ALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEAD  378 (391)
T ss_dssp             TSCCCCSSEEEEECSSCSSCHHHHHHHHH-HTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHH
T ss_pred             CCcceeEEEEEEECCccchhHHHHHHHHH-HCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHH
Confidence              1  1246777775  456788999995 89999997752210  0               014689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy16848        467 IDKFVTDLLAVW  478 (514)
Q Consensus       467 id~~~~~l~~~l  478 (514)
                      +++++++|++++
T Consensus       379 i~~~~~~l~~~l  390 (391)
T 3dr4_A          379 IDRVIAALDQVL  390 (391)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.92  E-value=7.2e-24  Score=218.03  Aligned_cols=284  Identities=15%  Similarity=0.147  Sum_probs=197.0

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.+.+++++||++|+..++.++.+  +||+|+++.+.|.+....+.                   
T Consensus        81 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~~~~~~~-------------------  139 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLAR--AGDSVVTTDRLFGHTLSLFQ-------------------  139 (430)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHH-------------------
T ss_pred             CHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHH-------------------
Confidence            577899999999999999999999999999999988866  99999999999988775221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (430)
T 3ri6_A          140 --------------------------------------------------------------------------------  139 (430)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.++++++.+|.+.+++.++    +++++|++++++||+|.+.|+++|.++|+++|+++|+|++|
T Consensus       140 ---------~~~~~~G~~~~~v~~~d~~~l~~ai~----~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~  206 (430)
T 3ri6_A          140 ---------KTLPSFGIEVRFVDVMDSLAVEHACD----ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTM  206 (430)
T ss_dssp             ---------THHHHTTCEEEEECTTCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTT
T ss_pred             ---------HHHHHcCCEEEEeCCCCHHHHHHhhC----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence                     11223355555666555555555553    46899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEe--cHHH------------------HHHHHhh-cC
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVG--TKNF------------------IDTIRSY-AA  353 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~--~~~~------------------~~~l~~~-~~  353 (514)
                      +.+...         .....+.|+++.|++|++++.    ||+++.  +.+.                  +..++.. ..
T Consensus       207 ~~~~~~---------~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~  277 (430)
T 3ri6_A          207 TPPYLL---------EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQ  277 (430)
T ss_dssp             SCTTTC---------CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHH
T ss_pred             cccccC---------ChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHH
Confidence            855431         111346899999999999864    477773  3212                  2222211 11


Q ss_pred             ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc-cC----------------CCc-EE
Q psy16848        354 GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE-HT----------------PSH-II  414 (514)
Q Consensus       354 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~-~~  414 (514)
                      .+  +..+++..+..+...++.+     ....++..++++++.+.|++. ++..+ .|                .|+ ++
T Consensus       278 ~~--g~~~~~~~a~l~l~~l~~l-----~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~l  350 (430)
T 3ri6_A          278 NL--GPSLSPHNAYLQSLGLETM-----ALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSIL  350 (430)
T ss_dssp             HH--CCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred             hc--CCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEE
Confidence            11  3356777666666666543     335667788888999999876 44321 11                156 99


Q ss_pred             EEEeCCCccHHHHHHHHHHhCCeEEecccCCCC--------------------CCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        415 PIKIGNPALNTKICDMLLKEKGHYVQPINYPTV--------------------PVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       415 ~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~--------------------~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                      ++.+++.....++.+.+ +..++.++.|..+..                    ...++.||++++...    ++.+++.|
T Consensus       351 sf~l~~~~~~~~~~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~----~~dl~~dl  425 (430)
T 3ri6_A          351 TFELESKEASYRFMDAL-KLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEE----IEDLKEDI  425 (430)
T ss_dssp             EEECSSHHHHHHHHHHC-SSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSC----HHHHHHHH
T ss_pred             EEEECCHHHHHHHHHhC-CcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCC----HHHHHHHH
Confidence            99998555566777777 356666555443221                    124689999998544    44455555


Q ss_pred             HHH
Q psy16848        475 LAV  477 (514)
Q Consensus       475 ~~~  477 (514)
                      +++
T Consensus       426 ~~a  428 (430)
T 3ri6_A          426 LQA  428 (430)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.92  E-value=4.4e-24  Score=221.89  Aligned_cols=287  Identities=17%  Similarity=0.184  Sum_probs=195.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.+++++++||++|+..++. +..  +||+|+++.+.|.+....++                   
T Consensus       132 ~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~--~Gd~Vi~~~~~y~~~~~~~~-------------------  189 (464)
T 1ibj_A          132 NPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIK--NGEEIVAGDDVYGGSDRLLS-------------------  189 (464)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSC--TTCEEEEESSCCHHHHHHHH-------------------
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhC--CCCEEEEECCCchhHHHHHH-------------------
Confidence            35789999999999999989999999998877664 544  99999999999988764321                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (464)
T 1ibj_A          190 --------------------------------------------------------------------------------  189 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|++++.++..|.+.+++.+.    +++++|++++++||+|.++++++|.++|++||+++|+||+|
T Consensus       190 ---------~~~~~~G~~v~~v~~~d~~~l~~~i~----~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~  256 (464)
T 1ibj_A          190 ---------QVVPRSGVVVKRVNTTKLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSI  256 (464)
T ss_dssp             ---------HTSGGGTCEEEEECTTSHHHHHHHCC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTT
T ss_pred             ---------HHHHHcCCEEEEeCCCCHHHHHHHhc----cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCC
Confidence                     01122345555555555555555553    46899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCC-C---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-G---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +.+...      .+.   ..++|++++|+||++++. |   |+++++ +++++.+.......  +...++..+.++..++
T Consensus       257 ~~g~~~------~~~---~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~--g~~~~~~~~~a~~~al  325 (464)
T 1ibj_A          257 MSPVLS------RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE--GSGLAPFDCWLCLRGI  325 (464)
T ss_dssp             TCTTTC------CGG---GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHT--TCBCCHHHHHHHHHHH
T ss_pred             cccccC------Chh---hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhc--CCCCCHHHHHHHHhch
Confidence            854321      011   236899999999999652 3   899888 47888776554222  2245677777776666


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC---------------CCccccC----CCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI---------------GFPVEHT----PSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +...     ...++..+....+.+.|++.               ++.+..+    .++++.+.+++......+.+.| +.
T Consensus       326 ~~~~-----~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L-~~  399 (464)
T 1ibj_A          326 KTMA-----LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT-KY  399 (464)
T ss_dssp             TTHH-----HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHC-SS
T ss_pred             hhHH-----HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhc-Cc
Confidence            5321     12222222333333444332               2223222    3568888885322234577777 37


Q ss_pred             CCeEEeccc------------CCCC--------CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        435 KGHYVQPIN------------YPTV--------PVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       435 ~GI~v~~~~------------~~~~--------~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .||.++.|.            .+..        ...++++|++++.    |+++++++.|+++++++
T Consensus       400 ~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~~  462 (464)
T 1ibj_A          400 FSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF  462 (464)
T ss_dssp             SEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred             ceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhhc
Confidence            888887764            1111        1125799999994    89999999999988753

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.92  E-value=5e-25  Score=242.81  Aligned_cols=380  Identities=13%  Similarity=0.041  Sum_probs=239.9

Q ss_pred             eeeeccc---CCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEeccccccc
Q psy16848         19 VTCRLSS---VQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYVAND   89 (514)
Q Consensus        19 ~~~d~~~---~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~a~~   89 (514)
                      +|+|+.+   +..+|   ||++.+|+.+|++++++...    .....+...+++++++++++   .++++|++||++||+
T Consensus       381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~----~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E  456 (831)
T 4a0g_A          381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMF----PENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIE  456 (831)
T ss_dssp             EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCC----TTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHH
T ss_pred             heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccc----cccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHH
Confidence            6778755   34443   79999999999999875421    11235778899999999986   568899999999999


Q ss_pred             cchhhccc-----c-----------CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcc---cCCCcE
Q psy16848         90 STLFTLGK-----M-----------IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD---VKIPKL  150 (514)
Q Consensus        90 ~~l~~l~~-----~-----------~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~  150 (514)
                      .||+...+     .           ++.+.|..+..+|..++.+++.++..........+      +.+..   ...|..
T Consensus       457 ~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~------~~~~~~~~~~~p~~  530 (831)
T 4a0g_A          457 IALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQP------WYTGRGLFLDPPTV  530 (831)
T ss_dssp             HHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCT------TCCCCEEEECCCEE
T ss_pred             HHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccc------cccCCccccCCccc
Confidence            99987621     1           13457778899999999999888754321100000      00000   000100


Q ss_pred             EEeeccccccCC------ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeec
Q psy16848        151 VAFETVHSMTGA------ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHA  224 (514)
Q Consensus       151 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~  224 (514)
                      ...+++++.+-+      .+...++..+.+..+..   .+          ...                           
T Consensus       531 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~----------~~~---------------------------  570 (831)
T 4a0g_A          531 FLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKS---RD----------AST---------------------------  570 (831)
T ss_dssp             EEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGG---GG----------GSH---------------------------
T ss_pred             cccCCceEecCCccccccccccccccchhhhhccc---cc----------chh---------------------------
Confidence            001121111100      00000000000000000   00          000                           


Q ss_pred             chHHHHhhCCCCEEEecCCChhHHHHHHhhc----cCCCceEEEEecC-CCCCccccC----HHHHHHHHHHcCCEEEEe
Q psy16848        225 SMIQGIRNSSAPKIIYRHNDVNHLTQVLENM----DVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVD  295 (514)
Q Consensus       225 ~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~----~~~~~~~vv~~~~-~nptG~~~~----l~~l~~l~~~~gv~li~D  295 (514)
                                     ......+.+++.|++.    ..+++++|+++++ ++..|...+    +++|+++|++||+++|+|
T Consensus       571 ---------------~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~D  635 (831)
T 4a0g_A          571 ---------------LARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFD  635 (831)
T ss_dssp             ---------------HHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ---------------hhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence                           0000124455555432    2356899999997 999998876    899999999999999999


Q ss_pred             cccc-ccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcC----ceEeccCCcHHHH
Q psy16848        296 EVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAA----GFIFTTSLPPTVL  366 (514)
Q Consensus       296 ea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~----~~~~~~~~~~~~~  366 (514)
                      |+++ +|+.|+.+  ..+.+++  .+|++  +++|++++ |    |++++++++.+.+.....    ..+++++.+++.+
T Consensus       636 EV~tGfGRtG~~f--a~e~~gv--~PDii--tlsK~L~g-G~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~  708 (831)
T 4a0g_A          636 EVFTGFWRLGVET--TTELLGC--KPDIA--CFAKLLTG-GMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGC  708 (831)
T ss_dssp             CTTTTTTTTSBSS--THHHHSS--CCSEE--EECGGGGT-TSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHH
T ss_pred             cCccccccCCCch--hhHhcCC--CCcEE--EEeccccc-CccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHH
Confidence            9999 77776544  2344554  78998  89999977 4    899999999988764321    1334678899999


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHH--------HHHHHHHHhC-CCccccCCCcEEEEEeCCC--------ccHHHHHH
Q psy16848        367 AGAREAIRILSSQEGVELRAKHQDIV--------AYLRNELIQI-GFPVEHTPSHIIPIKIGNP--------ALNTKICD  429 (514)
Q Consensus       367 ~a~~~~l~~~~~~~~~~~~~~~~~~~--------~~l~~~L~~~-g~~~~~~~~~~~~i~l~~~--------~~~~~~~~  429 (514)
                      +++.++|+.+.++.   +.+++.++.        +.+.+.+.+. .+..+...|.++.+++...        ....++.+
T Consensus       709 Aaala~L~~i~~~~---l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~  785 (831)
T 4a0g_A          709 ATAAKAIQWFKDPE---TNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLI  785 (831)
T ss_dssp             HHHHHHHHHHHCTT---TCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHH
T ss_pred             HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHH
Confidence            99999999886544   222222211        2344455554 3333455677888887532        23557888


Q ss_pred             HHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        430 MLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       430 ~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .|+ ++||.+.+.        .+.+|++++..+|++|+++++++|++++++++
T Consensus       786 ~l~-e~Gv~v~p~--------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~  829 (831)
T 4a0g_A          786 MLR-EDGIFTRPL--------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFN  829 (831)
T ss_dssp             HHH-HTTEECCCB--------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred             HHH-HCCcEEEec--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            886 899998753        35899999999999999999999999987653

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.92  E-value=7.2e-23  Score=213.13  Aligned_cols=319  Identities=14%  Similarity=0.123  Sum_probs=206.4

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc-hhhhhhhhcCCCCeeeccCCChHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH-ASMIQGIRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h-~~~~~~~~~~~~~~~~~~~~d~~~l  136 (514)
                      ..+...++++.++++++.+++++++||++|+..++.++.+  +||  +++.++| .+...+++..|++++.++... +  
T Consensus        73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~--~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~-~--  145 (456)
T 2ez2_A           73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIK--PGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDE-A--  145 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCC--TTC--EEEESSCCHHHHHHHHHTTCEEEECBCGG-G--
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCC--CCC--EeccccccchhHHHHHHcCCEEEEecccc-c--
Confidence            3567889999999999999999999999999999988865  999  5556666 887888888888777553310 0  


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                            ....                                                                      
T Consensus       146 ------~~~~----------------------------------------------------------------------  149 (456)
T 2ez2_A          146 ------HDAG----------------------------------------------------------------------  149 (456)
T ss_dssp             ------GCTT----------------------------------------------------------------------
T ss_pred             ------cccc----------------------------------------------------------------------
Confidence                  0000                                                                      


Q ss_pred             CCceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhccCCCceEEEEecCCC-CCccccC---HHHHHHHHHHcCCE
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENMDVKIPKLVAFETVHS-MTGAICP---LKELCEVSHQHGAL  291 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~~~~~vv~~~~~n-ptG~~~~---l~~l~~l~~~~gv~  291 (514)
                                         ....+. ..|.+.+++.+.+...++++++++++++| |+|.+++   +++|.++|++||++
T Consensus       150 -------------------~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~  210 (456)
T 2ez2_A          150 -------------------LNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIK  210 (456)
T ss_dssp             -------------------CCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCC
T ss_pred             -------------------ccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCe
Confidence                               000000 11566677777643212358999999998 9999998   99999999999999


Q ss_pred             EEEeccccccc--------cCCCCCCccccC-CCccCceEEEcCCcccccCC-CeEEEe-cHHHHHHHHhhcCce-Ee--
Q psy16848        292 TFVDEVHAVGL--------YGEHGAGIGERD-GQLHNMDIISGTLGKAFGNI-GGYIVG-TKNFIDTIRSYAAGF-IF--  357 (514)
Q Consensus       292 li~Dea~~~g~--------~g~~~~~~~~~~-~~~~~~di~~~S~sK~lg~~-GG~l~~-~~~~~~~l~~~~~~~-~~--  357 (514)
                      +|+||+|+.|.        ....+..+.+.. ......|+++.|++|..+.+ ||++++ ++++++.+....... .+  
T Consensus       211 li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~  290 (456)
T 2ez2_A          211 VFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPS  290 (456)
T ss_dssp             EEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTT
T ss_pred             EEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhccCccc
Confidence            99999999641        111221110000 00113577777888987643 599888 678887765433210 00  


Q ss_pred             ccCCcHHHHHH-HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeC---CCccHHHH-----
Q psy16848        358 TTSLPPTVLAG-AREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIG---NPALNTKI-----  427 (514)
Q Consensus       358 ~~~~~~~~~~a-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~---~~~~~~~~-----  427 (514)
                      ..+.+...+.+ +.+.++.+.    ++..++.+++.+++.+.|++.|+++..+. +.++++.+.   ...+..++     
T Consensus       291 ~~~~~~~~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l  366 (456)
T 2ez2_A          291 YGGLAGRDMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSL  366 (456)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHH
T ss_pred             ccCcchhHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHH
Confidence            11223333333 344333321    34566667778888888988777765443 456666652   22223334     


Q ss_pred             HHHHHHhCCeEEec-ccCCCC---------CCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcC
Q psy16848        428 CDMLLKEKGHYVQP-INYPTV---------PVGEEKIRLAPTPF-HTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       428 ~~~Ll~~~GI~v~~-~~~~~~---------~~~~~~iRl~~~~~-~t~e~id~~~~~l~~~l~~~~  482 (514)
                      ++.|++++||.+.+ +..+..         ..+.+++|++++.. ++++++++++++|++++++..
T Consensus       367 ~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          367 AASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             HHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            77774588998754 332110         12246899999976 899999999999999998754

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.92  E-value=2e-23  Score=217.09  Aligned_cols=333  Identities=12%  Similarity=0.025  Sum_probs=224.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-------EEEEeccccccccchhhccc------
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-------GLVFTSCYVANDSTLFTLGK------   97 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~i~~~sGt~a~~~~l~~l~~------   97 (514)
                      +|.+.+++.+++......+.   ...+..++.+++++++++++|.+.       ++++++||+|+..++.++..      
T Consensus        55 ~~~v~e~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~  131 (452)
T 2dgk_A           55 DENVHKLMDLSINKNWIDKE---EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM  131 (452)
T ss_dssp             CHHHHHHHHHTTTCBTTCTT---TCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccCCCChh---hChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence            57787777776654222221   122445677888999999998763       67788899999888877642      


Q ss_pred             cCCC-----ceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         98 MIPG-----LHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        98 ~~~g-----d~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      ..+|     +.|+++. .|.++..+++..|.+++.++.++ +                                      
T Consensus       132 ~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~--------------------------------------  171 (452)
T 2dgk_A          132 EAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-G--------------------------------------  171 (452)
T ss_dssp             HHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-T--------------------------------------
T ss_pred             HhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-C--------------------------------------
Confidence            0133     6899999 99998888887777766554310 0                                      


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                             .+                                            .-|.+.+++.+
T Consensus       172 -----------------------~~--------------------------------------------~~d~~~l~~~i  184 (452)
T 2dgk_A          172 -----------------------QL--------------------------------------------FMDPKRMIEAC  184 (452)
T ss_dssp             -----------------------BC--------------------------------------------SCCHHHHHHHC
T ss_pred             -----------------------CC--------------------------------------------eECHHHHHHHH
Confidence                                   00                                            00334444444


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc------CCEEEEecccccccc---CCCCCCccccCCCccCceEE
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH------GALTFVDEVHAVGLY---GEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~------gv~li~Dea~~~g~~---g~~~~~~~~~~~~~~~~di~  323 (514)
                          ++++++|++++++||+|.+.|+++|.++|+++      |+++++|++|+.+..   ....    +......+.|++
T Consensus       185 ----~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~----~~~~~~~~~d~~  256 (452)
T 2dgk_A          185 ----DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI----VWDFRLPRVKSI  256 (452)
T ss_dssp             ----CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC----CCSTTSTTEEEE
T ss_pred             ----hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccc----hhhcCCCCCcEE
Confidence                44689999999999999999999999999996      999999999995432   2211    111113468999


Q ss_pred             EcCCccccc-CCC-eEEEecH-HHH-HHHHhhcCce-----Ee--ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFG-NIG-GYIVGTK-NFI-DTIRSYAAGF-----IF--TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       324 ~~S~sK~lg-~~G-G~l~~~~-~~~-~~l~~~~~~~-----~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      ++|+||++. +.| |+++.++ +.+ +.+.......     .+  ..+.+.....+..+++..+..++++++.++..+++
T Consensus       257 ~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a  336 (452)
T 2dgk_A          257 SASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVA  336 (452)
T ss_dssp             EEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999763 334 8888754 333 3332111110     00  11222223344444555554566788899999999


Q ss_pred             HHHHHHHHhC-CCcccc-----CCCcEEEEEeCCC----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        393 AYLRNELIQI-GFPVEH-----TPSHIIPIKIGNP----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       393 ~~l~~~L~~~-g~~~~~-----~~~~~~~i~l~~~----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      +++.+.|++. ++.+..     +..+++.++++..    .+..++.+.|. ++||.+.....+....+..++|++++..+
T Consensus       337 ~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRis~~~~~  415 (452)
T 2dgk_A          337 AYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR-LRGWQVPAFTLGGEATDIVVMRIMCRRGF  415 (452)
T ss_dssp             HHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHH-HTTCBCCEEECSTTCTTCEEEEEECCTTC
T ss_pred             HHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHH-hcCCeeeeeeCCcccCCeEEEEEEecCCC
Confidence            9999999998 577653     3456788887642    23478999995 89997654333222234679999999899


Q ss_pred             CHHHHHHHHHHHHHHHHHcC
Q psy16848        463 TREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~~  482 (514)
                      |++|++++++.|+++++.++
T Consensus       416 t~e~id~li~~l~~~~~~~~  435 (452)
T 2dgk_A          416 EMDFAELLLEDYKASLKYLS  435 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887764

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.91  E-value=2.1e-23  Score=213.03  Aligned_cols=286  Identities=14%  Similarity=0.091  Sum_probs=195.8

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+...+++++++++.|.+++++++||++|+.. +.++.+  +||+|+++.+.|.++...+...+               
T Consensus        65 ~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~---------------  126 (400)
T 3nmy_A           65 HNPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLD--AGSHVVAMDDLYGGTFRLFERVR---------------  126 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSC--TTCEEEEESSCCHHHHHHHHHTH---------------
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcC--CCCEEEEeCCCchHHHHHHHHhh---------------
Confidence            357789999999999999999999999888876 455655  99999999999987764432110               


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (400)
T 3nmy_A          127 --------------------------------------------------------------------------------  126 (400)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                  +...|.++++++.+|.+.+++.++    +++++|++++++||+|.+.|+++|.++|++||+++|+|++
T Consensus       127 ------------~~~~g~~~~~v~~~d~~~l~~~i~----~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~  190 (400)
T 3nmy_A          127 ------------RRTAGLDFSFVDLTDPAAFKAAIR----ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNT  190 (400)
T ss_dssp             ------------HHHHCCEEEEECTTSHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             ------------HhhcCeEEEEECCCCHHHHHHHhc----cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence                        122355566666666666665553    4689999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCC----Ce-EE-EecHHHHHHHHhhcCceEeccCCcHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GG-YI-VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGARE  371 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG-~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~  371 (514)
                      |+.+....       .  ...++|+++.|++|++++.    || ++ ..++++.+.+......+  +...++..++++..
T Consensus       191 ~~~~~~~~-------~--~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~--g~~~~~~~a~~~l~  259 (400)
T 3nmy_A          191 FASPMLQR-------P--LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI--GGVQGPFDSFLALR  259 (400)
T ss_dssp             TTHHHHCC-------G--GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH--CCBCCHHHHHHHHH
T ss_pred             CcccccCC-------h--hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Confidence            98544321       1  1236899999999999864    36 44 45678888877655444  34567777766666


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCC-ccHHHHHHHH
Q psy16848        372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNP-ALNTKICDML  431 (514)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~-~~~~~~~~~L  431 (514)
                      .++.     +....++..++.+++.+.|++. .+..+                  ...|.++.+.++.. .....+.+.+
T Consensus       260 ~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l  334 (400)
T 3nmy_A          260 GLKT-----LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKT  334 (400)
T ss_dssp             HHTT-----HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHC
T ss_pred             hHhH-----HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcC
Confidence            5543     3346677788888888888876 22211                  22466999998653 2345566665


Q ss_pred             HHhCCeEEecccCCC------C--------------CCCCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        432 LKEKGHYVQPINYPT------V--------------PVGEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       432 l~~~GI~v~~~~~~~------~--------------~~~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                       +-.++.++.|....      .              ...++.+|++++...+++.++.+.++|
T Consensus       335 -~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al  396 (400)
T 3nmy_A          335 -ELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL  396 (400)
T ss_dssp             -SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             -CcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHH
Confidence             24444433332211      0              113579999999765554444443333

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.91  E-value=1.4e-22  Score=206.89  Aligned_cols=317  Identities=17%  Similarity=0.193  Sum_probs=221.0

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc-cccCCCceEEecCc
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL-GKMIPGLHYISDAG  109 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l-~~~~~gd~v~~~~~  109 (514)
                      .|++.+++.+.+.. +...       ...+...++++.+++++|.+++++++|||+|+..++.++ ..  +||.|+++.+
T Consensus        11 ~~~v~~a~~~~~~~-~~~~-------~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~--~gd~Vl~~~~   80 (394)
T 1o69_A           11 GGNELKYIEEVFKS-NYIA-------PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVK--QDDIVLASSF   80 (394)
T ss_dssp             -CCHHHHHHHHHHH-TTTS-------CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHHc-CCcc-------CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCC
Confidence            47788888888875 2111       113568899999999999988999999999999999888 55  9999999999


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      +|.+...+++..|.+++.++.++.                                                        
T Consensus        81 ~~~~~~~~~~~~g~~~~~v~~~~~--------------------------------------------------------  104 (394)
T 1o69_A           81 TFIASVAPICYLKAKPVFIDCDET--------------------------------------------------------  104 (394)
T ss_dssp             SCGGGTHHHHHTTCEEEEECBCTT--------------------------------------------------------
T ss_pred             ccHHHHHHHHHcCCEEEEEEeCCC--------------------------------------------------------
Confidence            999999888877777665543100                                                        


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCC
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  269 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~  269 (514)
                             +                                            ..|.+.+++.+++.. +++++|++++  
T Consensus       105 -------~--------------------------------------------~~d~~~l~~~i~~~~-~~~~~v~~~~--  130 (394)
T 1o69_A          105 -------Y--------------------------------------------NIDVDLLKLAIKECE-KKPKALILTH--  130 (394)
T ss_dssp             -------S--------------------------------------------SBCHHHHHHHHHHCS-SCCCEEEEEC--
T ss_pred             -------C--------------------------------------------CcCHHHHHHHHhccc-CCceEEEEEC--
Confidence                   0                                            014555566555421 2478888875  


Q ss_pred             CCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eEEEec-HHHHHH
Q psy16848        270 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GYIVGT-KNFIDT  347 (514)
Q Consensus       270 nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l~~~-~~~~~~  347 (514)
                       |+|...++++|.++|+++|+++|+|++|++|... .+.....    ..+.|+.++|.+|.+++.+ |+++++ +++++.
T Consensus       131 -~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~----~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~  204 (394)
T 1o69_A          131 -LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFY-KNKALGT----FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEK  204 (394)
T ss_dssp             -GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TTEETTS----SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHH
T ss_pred             -CCCChhhHHHHHHHHHHcCCEEEEECcCccccee-CCccccc----ccCcEEEEEeCCccCCCCCceEEEECCHHHHHH
Confidence             7999999999999999999999999999965431 1111111    1257888777799997633 999995 788888


Q ss_pred             HHhhcCceE------------eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC----C
Q psy16848        348 IRSYAAGFI------------FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP----S  411 (514)
Q Consensus       348 l~~~~~~~~------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~  411 (514)
                      +........            +..+.++..++++...++     .+++..++.+++++++.+.|++. +.+..+.    +
T Consensus       205 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~-----~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~  278 (394)
T 1o69_A          205 ARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME-----VLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRS  278 (394)
T ss_dssp             HHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEEC
T ss_pred             HHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcc
Confidence            765432210            111145555555544443     34457788899999999999887 5544331    2


Q ss_pred             c--EEEEEeCCC---------------------ccHHHHHHHHHHhCCeEEecccCCC--CCC--C-------------C
Q psy16848        412 H--IIPIKIGNP---------------------ALNTKICDMLLKEKGHYVQPINYPT--VPV--G-------------E  451 (514)
Q Consensus       412 ~--~~~i~l~~~---------------------~~~~~~~~~Ll~~~GI~v~~~~~~~--~~~--~-------------~  451 (514)
                      .  ++.+.++..                     .+..++.+.|. ++||.+++++.|.  .+.  .             .
T Consensus       279 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  357 (394)
T 1o69_A          279 NRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQ  357 (394)
T ss_dssp             CCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHH
T ss_pred             eeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHHHHhc
Confidence            2  466777642                     25678889995 8999999885431  110  0             1


Q ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        452 EKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       452 ~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +.+++..+..+|++|+++++++|+++++.
T Consensus       358 ~~~~~~~~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          358 KGICLPSGTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             HEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             CeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            45677778889999999999999987643

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.91  E-value=1.7e-23  Score=213.93  Aligned_cols=206  Identities=14%  Similarity=0.039  Sum_probs=157.9

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      ++++++|++++++||||.++|+++|.++   +|+++|+|++|+.+..        +. .. .+.|++++|+||++|+.| 
T Consensus       163 ~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~--------~~-~~-~~~di~~~s~sK~~~~~gg  229 (398)
T 2fyf_A          163 DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGL--------PV-DI-AETDAYYFAPQKNFASDGG  229 (398)
T ss_dssp             CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTS--------CC-CG-GGCSEEEECTTSTTCSCSS
T ss_pred             cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCc--------cc-Cc-ccCcEEEEecCcccCCCCc
Confidence            4568999999999999999998888877   8999999999986542        11 11 147899999999998864 


Q ss_pred             -eEEEecHHHHHHHHhhc--------------------CceEeccCCcHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHH
Q psy16848        336 -GYIVGTKNFIDTIRSYA--------------------AGFIFTTSLPPTVLAGAREAIRILSSQE-GVELRAKHQDIVA  393 (514)
Q Consensus       336 -G~l~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~  393 (514)
                       |++++++++++.+....                    .... ..+.+...+.++.++++.+.+.+ +++++++++++++
T Consensus       230 ~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  308 (398)
T 2fyf_A          230 LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQT-YNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ  308 (398)
T ss_dssp             EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCC-SSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCC-CCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             88899999888774321                    0111 12456666777788888765444 7889999999999


Q ss_pred             HHHHHHHhC-CCcccc--C--CCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        394 YLRNELIQI-GFPVEH--T--PSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       394 ~l~~~L~~~-g~~~~~--~--~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      ++.+.|+++ |+.+..  +  .++ ++++.++++.+..++.+.|. ++||.++++..   ..+.+++|++++..++++|+
T Consensus       309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~---~~~~~~iRis~~~~~t~e~i  384 (398)
T 2fyf_A          309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILR-ANGIVDTEPYR---KLGRNQLRVAMFPAVEPDDV  384 (398)
T ss_dssp             HHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHH-HTTCBCCSCCT---TTCSSEEEEECCTTSCHHHH
T ss_pred             HHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHH-HCCcEEecCcc---cCCCCEEEEEecCCCCHHHH
Confidence            999999998 777653  3  345 78888876556789999996 78999987532   12357999999988999999


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        468 DKFVTDLLAVWKS  480 (514)
Q Consensus       468 d~~~~~l~~~l~~  480 (514)
                      ++++++|++++++
T Consensus       385 ~~~~~~l~~~l~~  397 (398)
T 2fyf_A          385 SALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.91  E-value=3.2e-23  Score=211.74  Aligned_cols=332  Identities=11%  Similarity=-0.050  Sum_probs=215.0

Q ss_pred             ceeeecccCCCC-------CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----Cc--EEEEecc
Q psy16848         18 RVTCRLSSVQYK-------VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EA--GLVFTSC   84 (514)
Q Consensus        18 ~~~~d~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~--~i~~~sG   84 (514)
                      ...||++-+.|.       ..+.++++.. .++..+ ....+....|..++.+++.+++.+..+.    ++  .+++++|
T Consensus        29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~  106 (405)
T 3k7y_A           29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENY-KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGG  106 (405)
T ss_dssp             SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHC-CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHH
T ss_pred             cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCC-CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCch
Confidence            467999755442       2356666655 331211 1223334456666666666666544332    22  2556667


Q ss_pred             ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         85 YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        85 t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++|+..++.++....| |.|+++.++|......++.+|++++.++..+.                               
T Consensus       107 ~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-------------------------------  154 (405)
T 3k7y_A          107 TGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDY-------------------------------  154 (405)
T ss_dssp             HHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEET-------------------------------
T ss_pred             HHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEecccc-------------------------------
Confidence            7777777776654347 99999999999999888888888776543100                               


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                   .+.+                                             -|
T Consensus       155 -----------------------------~~~~---------------------------------------------~d  160 (405)
T 3k7y_A          155 -----------------------------NLID---------------------------------------------IN  160 (405)
T ss_dssp             -----------------------------TTTE---------------------------------------------EC
T ss_pred             -----------------------------ccCC---------------------------------------------cC
Confidence                                         0000                                             05


Q ss_pred             hhHHHHHHhhccCCCceEEEEec-CCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCC---CCccccCCCc
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG---AGIGERDGQL  317 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~---~~~~~~~~~~  317 (514)
                      ++.+++.+.+.  ++++++++++ +|||||.+++   +++|.++|++|++++|+||+|.....+...   .++..... .
T Consensus       161 ~~~l~~~l~~~--~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~-~  237 (405)
T 3k7y_A          161 YDLFLNDLRNI--PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE-K  237 (405)
T ss_dssp             HHHHHHHHHHS--CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT-T
T ss_pred             HHHHHHHHHhC--CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh-c
Confidence            56666666542  2356777765 5899999999   788999999999999999999843332110   01111111 1


Q ss_pred             cCceEEEcCCcccccCCC---eEEEe---cHHHHHHHHh----hcCceEeccCCcHHHHHHHHHHHHHh-----hhchHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVG---TKNFIDTIRS----YAAGFIFTTSLPPTVLAGAREAIRIL-----SSQEGV  382 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~---~~~~~~~l~~----~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~  382 (514)
                      .+..+++.||||.++.+|   ||+++   ++++++.+..    .....  ..+.+...+.++..+++.-     ..+++.
T Consensus       238 ~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~  315 (405)
T 3k7y_A          238 NIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKF--YSSPVIHTNRILCQLLNNQNLKLNWIKELS  315 (405)
T ss_dssp             TCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcc--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            256899999999999778   99753   5666554432    11111  1134566666666666531     123456


Q ss_pred             HHHHHHHHHHHHHHHHHH----hCC----CccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcE
Q psy16848        383 ELRAKHQDIVAYLRNELI----QIG----FPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEK  453 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~----~~g----~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~  453 (514)
                      +++++++++++.+.+.|+    ++|    +.+..+.++|| ++.++.     +++.+| +++||++.|+           
T Consensus       316 ~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----~~~~~L-~~~gV~v~p~-----------  378 (405)
T 3k7y_A          316 QLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----KIAEHL-KTHHIYIINN-----------  378 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----GGTTTT-TTTTEECCTT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----HHHHHH-HHCCEeecCC-----------
Confidence            778889999999999999    776    46667777744 444432     445677 6999998752           


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        454 IRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       454 iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      -|++++ ..+++++++++++|++++++
T Consensus       379 ~Ris~a-~~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          379 GRINVS-GITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             SEEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred             CeEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence            199997 46789999999999998875

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=6.3e-23  Score=211.26  Aligned_cols=287  Identities=16%  Similarity=0.138  Sum_probs=190.2

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+..+++++++++++|.+++++++||++|+..++.++..  +||+|+++.+.|.++...+..                  
T Consensus        57 ~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~------------------  116 (421)
T 2ctz_A           57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ--AGDNIVSTPNLYGGTFNQFKV------------------  116 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEECSCCCHHHHHHHHT------------------
T ss_pred             ChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHH------------------
Confidence            467899999999999998899999999999999988865  999999999999998755410                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (421)
T 2ctz_A          117 --------------------------------------------------------------------------------  116 (421)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEe-cCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIY-RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v-~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                .+...|++++.+ +.+|.+.+++.++    +++++|++++++||+|.+.|+++|.++|+++|+++|+|++
T Consensus       117 ----------~~~~~g~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~  182 (421)
T 2ctz_A          117 ----------TLKRLGIEVRFTSREERPEEFLALTD----EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT  182 (421)
T ss_dssp             ----------HHHHTTCEEEECCTTCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECG
T ss_pred             ----------HHHHcCCEEEEECCCCCHHHHHHhhc----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence                      011234444455 4445555444443    4689999999999999999999999999999999999999


Q ss_pred             c-cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec--HHH----HHHHHhhcC-------------
Q psy16848        298 H-AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT--KNF----IDTIRSYAA-------------  353 (514)
Q Consensus       298 ~-~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~--~~~----~~~l~~~~~-------------  353 (514)
                      | +++..+.       ..  ..++|++++|+||+++++|    |+++.+  +++    .+.+.....             
T Consensus       183 ~~~~g~~~~-------~~--~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~  253 (421)
T 2ctz_A          183 FGMGGYLLR-------PL--AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGE  253 (421)
T ss_dssp             GGGGGTSCC-------GG--GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGG
T ss_pred             cccccccCC-------cc--ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcch
Confidence            9 7664321       11  2368999999999998633    444442  222    222321100             


Q ss_pred             -----------ceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc--------------
Q psy16848        354 -----------GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE--------------  407 (514)
Q Consensus       354 -----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--------------  407 (514)
                                 ...++..+++..++++...++.+     ....++..++.+++.+.|++. ++..+              
T Consensus       254 ~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l-----~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~  328 (421)
T 2ctz_A          254 LAFIVKARVDGLRDQGQALGPFEAWVVLLGMETL-----SLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRA  328 (421)
T ss_dssp             GHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchH-----HHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHH
Confidence                       00112355666666665555533     345666668889999999886 55432              


Q ss_pred             -----cCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccC------CC------CC--------CCCcEEEEEeCCC
Q psy16848        408 -----HTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINY------PT------VP--------VGEEKIRLAPTPF  461 (514)
Q Consensus       408 -----~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~------~~------~~--------~~~~~iRl~~~~~  461 (514)
                           ...++++.+.+.+. .....+.+.+ +..++.++.+..      |.      .+        ..++.+|++++. 
T Consensus       329 ~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l-~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~-  406 (421)
T 2ctz_A          329 QKYFKGKPGAVLTFGLKGGYEAAKRFISRL-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL-  406 (421)
T ss_dssp             HHHHTTCCCSEEEEEETTHHHHHHHHHHTC-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS-
T ss_pred             HHhccCCCceEEEEEeCCCHHHHHHHHHhC-CcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC-
Confidence                 13466899998752 2334455555 244544443311      10      00        125899999985 


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVW  478 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l  478 (514)
                         ++++.+++.|++++
T Consensus       407 ---e~~~~li~~l~~al  420 (421)
T 2ctz_A          407 ---EHVEDLKAELKEAL  420 (421)
T ss_dssp             ---SCHHHHHHHHHHHT
T ss_pred             ---CCHHHHHHHHHHHh
Confidence               46666666666543

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.91  E-value=3.7e-22  Score=205.76  Aligned_cols=318  Identities=15%  Similarity=0.093  Sum_probs=218.7

Q ss_pred             CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCc-chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceE
Q psy16848         26 VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGN-SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHY  104 (514)
Q Consensus        26 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v  104 (514)
                      .++..++++.+++.++++. +.        ++. .+...++++.++++++.+++++++|||+|+..++.++.   +||.|
T Consensus        26 p~~~~p~~~~~a~~~~~~~-~~--------y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~---~gd~V   93 (424)
T 2po3_A           26 PNRIDRARLYERLDRALDS-QW--------LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG---LTGEV   93 (424)
T ss_dssp             CCCCCHHHHHHHHHHHHHH-TC--------CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT---CCSEE
T ss_pred             CCCCChHHHHHHHHHHHhc-CC--------cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC---CCCEE
Confidence            3333456899999888875 21        222 46788999999999999988999999999999998874   78999


Q ss_pred             EecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeec
Q psy16848        105 ISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE  184 (514)
Q Consensus       105 ~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (514)
                      +++.++|.+...+++..|.+++.++.+.                                                    
T Consensus        94 lv~~~~~~~~~~~~~~~G~~~~~v~~~~----------------------------------------------------  121 (424)
T 2po3_A           94 IMPSMTFAATPHALRWIGLTPVFADIDP----------------------------------------------------  121 (424)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBCT----------------------------------------------------
T ss_pred             EECCCccHHHHHHHHHcCCEEEEEecCC----------------------------------------------------
Confidence            9999999999887777777666544310                                                    


Q ss_pred             cccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEE
Q psy16848        185 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA  264 (514)
Q Consensus       185 ~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv  264 (514)
                                                                                +++..+.+.+++..++++++|+
T Consensus       122 ----------------------------------------------------------~~~~~d~~~l~~~i~~~~~~v~  143 (424)
T 2po3_A          122 ----------------------------------------------------------DTGNLDPDQVAAAVTPRTSAVV  143 (424)
T ss_dssp             ----------------------------------------------------------TTSSBCHHHHGGGCCTTEEEEE
T ss_pred             ----------------------------------------------------------CcCCcCHHHHHHhhCcCCcEEE
Confidence                                                                      0111122333444445688888


Q ss_pred             EecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEec
Q psy16848        265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVGT  341 (514)
Q Consensus       265 ~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~~  341 (514)
                      +++   |+|...++++|.++|+++|+++|+|++|++|.. ..+.++   ..   ..|++++|||  |++++ .||+++++
T Consensus       144 ~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~~~---~~---~~di~~~S~sk~K~l~~~~~G~~v~~  213 (424)
T 2po3_A          144 GVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGRPA---GS---LGDAEVFSFHATKAVNAFEGGAVVTD  213 (424)
T ss_dssp             EEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEET---TS---SSSEEEEECCTTSSSCCSSCEEEEES
T ss_pred             EEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCeec---cc---ccCEEEEeCCCCCCccCCCCeEEEeC
Confidence            754   899999999999999999999999999996543 111111   11   2468888998  88866 33999988


Q ss_pred             -HHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc-
Q psy16848        342 -KNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH-  408 (514)
Q Consensus       342 -~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-  408 (514)
                       +++++.+.......          +.+...++..++++...++     .+++..++.+++.+++.+.|+++ ++.+.. 
T Consensus       214 ~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  288 (424)
T 2po3_A          214 DADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLD-----AFPEVIDRNRRNHAAYREHLADLPGVLVADH  288 (424)
T ss_dssp             CHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTCSCTTEEECCG
T ss_pred             CHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCC
Confidence             78888776543211          0112344555555444333     34457778888888999999887 766543 


Q ss_pred             CCC-----cEEEEEeCC---CccHHHHHHHHHHhCCeEEecccCCCCC-------C-----------CCcEEEEEeCCCC
Q psy16848        409 TPS-----HIIPIKIGN---PALNTKICDMLLKEKGHYVQPINYPTVP-------V-----------GEEKIRLAPTPFH  462 (514)
Q Consensus       409 ~~~-----~~~~i~l~~---~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-------~-----------~~~~iRl~~~~~~  462 (514)
                      +.+     .++.+.+++   +.+..++.+.| .++||.+.+...+...       .           ..+.+|+++...+
T Consensus       289 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~  367 (424)
T 2po3_A          289 DRHGLNNHQYVIVEIDEATTGIHRDLVMEVL-KAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAI  367 (424)
T ss_dssp             GGGSCCCCCCEEEEECHHHHSSCHHHHHHHH-HHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTC
T ss_pred             CCCCccccEEEEEEECCccchhhHHHHHHHH-HHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCC
Confidence            221     355576663   34577888888 4899999862210100       0           0123888877899


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      +++|+++++++|++++++.
T Consensus       368 t~e~i~~~~~~L~~~~~~~  386 (424)
T 2po3_A          368 GDDDIRRVADLLRLCATRG  386 (424)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhh
Confidence            9999999999999987654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.90  E-value=1.9e-23  Score=215.43  Aligned_cols=319  Identities=12%  Similarity=0.032  Sum_probs=214.6

Q ss_pred             eeeecccCCC--CCChhHHHHHHHHHHHhCCCCCCcCccc-CcchHHHHHHHHHHhHcC--------CCcEEEEeccccc
Q psy16848         19 VTCRLSSVQY--KVPKGGRKCLGEALEKFGTGAGGTRNIS-GNSLFHEKLEEDVAKLHQ--------KEAGLVFTSCYVA   87 (514)
Q Consensus        19 ~~~d~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~--------~~~~i~~~sGt~a   87 (514)
                      ..+|+..++.  ..++.+.+++.+.+...+....++.... | .....++++.++++++        .++.+++++++++
T Consensus        57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a  135 (427)
T 2hox_A           57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL  135 (427)
T ss_dssp             CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred             ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence            3566643322  2234566666665532222111121122 3 1113556666666653        2345555666778


Q ss_pred             cccchhhc--------cccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         88 NDSTLFTL--------GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        88 ~~~~l~~l--------~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      +..++.++        ..  +||.|+++.++|......++..|.+++.+.. |.+.|                       
T Consensus       136 l~~~~~~l~~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l-----------------------  189 (427)
T 2hox_A          136 IHGLVISLSPNMTATPDA--PESKVVAHAPFYPVFREQTKYFDKKGYVWAG-NAANY-----------------------  189 (427)
T ss_dssp             HHHHHHHHSCCTTTCTTS--CCEEEEECSSCCHHHHHHHHHSCBTTEEEEE-EGGGG-----------------------
T ss_pred             HHHHHHHHhhccccccCC--CCCEEEEeCCCcccHHHHHHHcCCeeeeecC-CHHHH-----------------------
Confidence            88888888        55  9999999999999998888887777654322 22222                       


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (427)
T 2hox_A          190 --------------------------------------------------------------------------------  189 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccC
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN  319 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~  319 (514)
                                   ++..+++++++++++|+||||.+++ + +   ++  ++..+.|+++..     ...++...   ..+
T Consensus       190 -------------~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~-----~~~s~~~~---~~~  241 (427)
T 2hox_A          190 -------------VNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYW-----PHYTPIKY---KAD  241 (427)
T ss_dssp             -------------TTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCS-----TTTSCCCS---CBC
T ss_pred             -------------HHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccC-----CCCCcccc---CCC
Confidence                         1222335789999999999999999 3 2   22  567888887742     11122222   246


Q ss_pred             ceEEEcCCcccccCCC---eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh----------hchHHHHH
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS----------SQEGVELR  385 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~  385 (514)
                      .+++++||||.+|.+|   ||+++ ++++++.+.......  ..+.+.+.+.++..+|+...          ...+.+.+
T Consensus       242 ~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~  319 (427)
T 2hox_A          242 EDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKN--TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGF  319 (427)
T ss_dssp             CSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHH
T ss_pred             ceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHH
Confidence            8999999999999767   99999 589998887765433  33677888877777776431          34566788


Q ss_pred             HHHHHHHHHHHHHHHhC-CCcc--c------------cCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC
Q psy16848        386 AKHQDIVAYLRNELIQI-GFPV--E------------HTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV  449 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~-g~~~--~------------~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~  449 (514)
                      ++++++++++.+.|++. |+.+  .            .+. +.++++.++.  +..++++.+++++||.++++..|..  
T Consensus       320 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~~ll~~~gI~v~pg~~f~~--  395 (427)
T 2hox_A          320 KKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCYQTFQNGRINTQNGVGFEA--  395 (427)
T ss_dssp             HHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--GGGCSHHHHHHHTTEECEEGGGGTS--
T ss_pred             HHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--cHHHHHHHHHHHCCEEEcCCCccCC--
Confidence            89999999999999987 6554  1            122 4567788865  3456778876689999999986543  


Q ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        450 GEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       450 ~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      +++++|++++  .+++++++++++|++++++
T Consensus       396 ~~~~~Ris~~--~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          396 SSRYVRLSLI--KTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             CTTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence            5689999998  4889999999999988743

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.90  E-value=2.8e-22  Score=211.00  Aligned_cols=308  Identities=12%  Similarity=0.089  Sum_probs=204.0

Q ss_pred             chHHHHHHHHHHhHcCC---CcEEEEeccccccccchhhccc--c---------CC------Cc-eEEecCccchhhhhh
Q psy16848         59 SLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDSTLFTLGK--M---------IP------GL-HYISDAGNHASMIQG  117 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~l~~l~~--~---------~~------gd-~v~~~~~~h~~~~~~  117 (514)
                      .++.+++++++++++|.   +.+++++|||+|+..++.++..  .         .+      |+ .|+++...|.++..+
T Consensus       139 ~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~  218 (497)
T 2qma_A          139 TYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKS  218 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHH
Confidence            34555667779999986   3567788899999888877310  0         02      46 899999999999988


Q ss_pred             hhcCCC---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccC
Q psy16848        118 IRNSSA---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEH  194 (514)
Q Consensus       118 ~~~~~~---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  194 (514)
                      ++..|.   +++.++.++                                                              
T Consensus       219 ~~~~g~g~~~v~~v~~~~--------------------------------------------------------------  236 (497)
T 2qma_A          219 ASWMGLGEKAVMTVDANA--------------------------------------------------------------  236 (497)
T ss_dssp             HHHTTSCGGGEEEECBCT--------------------------------------------------------------
T ss_pred             HHHcCCCcccEEEEecCC--------------------------------------------------------------
Confidence            887765   455444320                                                              


Q ss_pred             CCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCC--ceEEEEecCCCCC
Q psy16848        195 GAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKI--PKLVAFETVHSMT  272 (514)
Q Consensus       195 ~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~--~~~vv~~~~~npt  272 (514)
                       .+                                            .-|.+.+++.+++.....  +.+|++++++|++
T Consensus       237 -~~--------------------------------------------~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~t  271 (497)
T 2qma_A          237 -DG--------------------------------------------TMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDH  271 (497)
T ss_dssp             -TS--------------------------------------------SBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred             -CC--------------------------------------------cCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCC
Confidence             00                                            014555555555432222  3478889999999


Q ss_pred             ccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC-C-eEEEec-HHHHHHHH
Q psy16848        273 GAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI-G-GYIVGT-KNFIDTIR  349 (514)
Q Consensus       273 G~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~-G-G~l~~~-~~~~~~l~  349 (514)
                      |.+.|+++|.++|++||+++++|++|+.+........  ...++ ..+|+++.|+||+++.+ | |+++.+ +..++.+.
T Consensus       272 G~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi-~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~  348 (497)
T 2qma_A          272 GAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGV-ERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLL  348 (497)
T ss_dssp             CCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTG-GGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGC
T ss_pred             CCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCc-ccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhc
Confidence            9999999999999999999999999995543211110  12222 36799999999988653 3 777765 44343332


Q ss_pred             hhcCceEeccC---CcHH----------HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc-cCCCcEE
Q psy16848        350 SYAAGFIFTTS---LPPT----------VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE-HTPSHII  414 (514)
Q Consensus       350 ~~~~~~~~~~~---~~~~----------~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~  414 (514)
                      .. ..+.....   .+..          .......+++.+..++++++.++..++++++.+.|++. ++++. .+..+++
T Consensus       349 ~~-~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v  427 (497)
T 2qma_A          349 HH-ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTV  427 (497)
T ss_dssp             C---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEE
T ss_pred             CC-chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEE
Confidence            11 11111100   1111          11223445665555677788999999999999999987 77764 4556688


Q ss_pred             EEEeCCCc-----cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        415 PIKIGNPA-----LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       415 ~i~l~~~~-----~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+++....     ...++.+.+. ++|+.+.+...   ..+..++|+++ +..+|++|++++++.|+++++++
T Consensus       428 ~f~~~~~~~~~~~l~~~l~~~l~-~~G~~~~~~~~---~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          428 LFRATHETADLDELNKALRLEAL-TRGIAVLGETI---VDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             EEEECCSSSCHHHHHHHHHHHHH-HHTSCBCEEEE---ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCccCHHHHHHHHHHHHH-hCCCEEEEeeE---ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            88875421     1345667775 88988764332   12356899998 78899999999999999988764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.90  E-value=1.1e-22  Score=215.80  Aligned_cols=223  Identities=11%  Similarity=0.043  Sum_probs=149.6

Q ss_pred             HHhhccCCCceEEEEecCCCCCccccC---HHHHHHHH--HHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVS--HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~--~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      .+++...++++++++++|+||||.+++   +++|.++|  +++|+++|+||+|+....+  ..++...   ..+.++++.
T Consensus       237 ~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~---~~~~~i~~~  311 (546)
T 2zy4_A          237 ELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAI---CPENTLLVY  311 (546)
T ss_dssp             HHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHH---CGGGEEEEE
T ss_pred             HHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHh---CCCCEEEEE
Confidence            334434567899999999999999999   67788998  7789999999999944322  2222221   235789999


Q ss_pred             CCcccccCCC---eEEEecHH-HHHHHHhhc------------Cc----------------------eEeccCCcHHHHH
Q psy16848        326 TLGKAFGNIG---GYIVGTKN-FIDTIRSYA------------AG----------------------FIFTTSLPPTVLA  367 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~-~~~~l~~~~------------~~----------------------~~~~~~~~~~~~~  367 (514)
                      ||||.+|.+|   ||++++++ +++.+....            ..                      ...+.+.+.+.+.
T Consensus       312 S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~  391 (546)
T 2zy4_A          312 SFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQV  391 (546)
T ss_dssp             ESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHH
T ss_pred             eCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHH
Confidence            9999998778   99998875 777663211            00                      0012245555554


Q ss_pred             HHH--HHHHHhh--hchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-EEEEEeCC----------------CccHHH
Q psy16848        368 GAR--EAIRILS--SQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGN----------------PALNTK  426 (514)
Q Consensus       368 a~~--~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~----------------~~~~~~  426 (514)
                      ++.  +....+.  +.+.+++++.++++++.+.+.|. .++.+..+.++ ++++.++.                +.+..+
T Consensus       392 a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~  470 (546)
T 2zy4_A          392 QMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD  470 (546)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence            421  1112221  34567788888888888888875 45544445555 45676642                011234


Q ss_pred             HHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        427 ICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       427 ~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +...+++++||.+.||..+..  +.+++|++++ ..+++++++++++|+++++++.
T Consensus       471 ~l~~ll~~~gV~v~pG~~F~~--~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          471 MLFRIADETGIVLLPGRGFGS--NRPSGRASLA-NLNEYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             HHHHHHHHHSCCCEESSCTTC--SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEeCccccCC--CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence            334444699999999997653  4578999998 4579999999999999887654

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.90  E-value=4.7e-22  Score=202.65  Aligned_cols=309  Identities=14%  Similarity=0.095  Sum_probs=213.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcc-----ccCCCceEE
Q psy16848         31 PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLG-----KMIPGLHYI  105 (514)
Q Consensus        31 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~-----~~~~gd~v~  105 (514)
                      +|++.+++.+++....         +...+...++++.+++++|.+++++++|||+|+..++.++.     ...+||+|+
T Consensus        14 ~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi   84 (390)
T 3b8x_A           14 DDLEYKAIQSVLDSKM---------FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEII   84 (390)
T ss_dssp             CHHHHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEE
T ss_pred             CHHHHHHHHHHHHcCC---------CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEE
Confidence            6888999999887621         12246789999999999999999999999999999998872     134899999


Q ss_pred             ecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecc
Q psy16848        106 SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  185 (514)
Q Consensus       106 ~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (514)
                      ++.++|.++..+++..|.+++.++.+. +                                                   
T Consensus        85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~---------------------------------------------------  112 (390)
T 3b8x_A           85 VPAVSWSTTYYPLQQYGLRVKFVDIDI-N---------------------------------------------------  112 (390)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBCT-T---------------------------------------------------
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecCc-c---------------------------------------------------
Confidence            999999999988887777766554320 0                                                   


Q ss_pred             ccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEE
Q psy16848        186 HAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF  265 (514)
Q Consensus       186 ~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~  265 (514)
                                .+                                            .-|.+.+++.+    ++++++|++
T Consensus       113 ----------~~--------------------------------------------~~d~~~l~~~i----~~~~~~v~~  134 (390)
T 3b8x_A          113 ----------TL--------------------------------------------NIDIESLKEAV----TDSTKAILT  134 (390)
T ss_dssp             ----------TC--------------------------------------------SBCHHHHHHHC----CTTEEEEEE
T ss_pred             ----------cc--------------------------------------------CcCHHHHHHHh----CcCCeEEEE
Confidence                      00                                            00344444444    345788887


Q ss_pred             ecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC--ccccc-CCCeEEEecH
Q psy16848        266 ETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL--GKAFG-NIGGYIVGTK  342 (514)
Q Consensus       266 ~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~--sK~lg-~~GG~l~~~~  342 (514)
                      ++   ++|...++++|.++|+++|+++|+|++|+.|... .+    ...+.  ..|+.++|+  +|.++ +.||++++++
T Consensus       135 ~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~g~--~~~~~~~s~~~~k~~~~g~gG~~~~~~  204 (390)
T 3b8x_A          135 VN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NN----KCAGT--FGLMGTFSSFYSNHIATMEGGCIVTDD  204 (390)
T ss_dssp             EC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TT----EETTS--SSSEEEEECCTTSSSCSSSCEEEEESC
T ss_pred             EC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CC----ccccc--ccceEEEEccCCCCCccCCceEEEeCC
Confidence            64   5688889999999999999999999999976542 11    11121  235554443  45553 3468888875


Q ss_pred             -HHHHHHHhhcC-c----------------------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        343 -NFIDTIRSYAA-G----------------------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       343 -~~~~~l~~~~~-~----------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                       ++.+.++.... +                            .+++..+++..++++...++.+     ++..++.++++
T Consensus       205 ~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l-----~~~~~~~~~~~  279 (390)
T 3b8x_A          205 EEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL-----PRFISVRRKNA  279 (390)
T ss_dssp             HHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence             66665543221 1                            1122336777777777766543     45788889999


Q ss_pred             HHHHHHHHhC-CCccccC--CCc--EEEEEeCC--CccHHHHHHHHHHhCCeEEeccc---CCCC-CC------------
Q psy16848        393 AYLRNELIQI-GFPVEHT--PSH--IIPIKIGN--PALNTKICDMLLKEKGHYVQPIN---YPTV-PV------------  449 (514)
Q Consensus       393 ~~l~~~L~~~-g~~~~~~--~~~--~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~---~~~~-~~------------  449 (514)
                      +++.+.|+++ ++.+..+  ..+  .+.+.++.  +.+..++.+.|. ++||.+++..   .|.. +.            
T Consensus       280 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (390)
T 3b8x_A          280 EYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLN-SAGIECRPIVTGNFLKNTDVLKYFDYTVHNNV  358 (390)
T ss_dssp             HHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHH-HTTBCCBCSTTSSGGGCHHHHTTCEEEESSCC
T ss_pred             HHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHH-HCCCCeeeecCCchhhcchhhhcCCCCCcCCC
Confidence            9999999887 6665432  233  35566653  345788999994 8999998632   1112 11            


Q ss_pred             ------CCcEEEEEeCCCCCHHHHHHHHHHH
Q psy16848        450 ------GEEKIRLAPTPFHTREMIDKFVTDL  474 (514)
Q Consensus       450 ------~~~~iRl~~~~~~t~e~id~~~~~l  474 (514)
                            ..+.+|++++..+|++|++++++.|
T Consensus       359 ~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          359 DNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             hHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence                  0147999999999999999999876

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.90  E-value=1.8e-22  Score=212.74  Aligned_cols=311  Identities=13%  Similarity=0.136  Sum_probs=208.2

Q ss_pred             cchHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhcccc------------CCCceEEecCccchhhhhhhhcC
Q psy16848         58 NSLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTLGKM------------IPGLHYISDAGNHASMIQGIRNS  121 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l~~~------------~~gd~v~~~~~~h~~~~~~~~~~  121 (514)
                      ..++.+++.+++++++|.+    .++++++||+|+..++.++...            .+++.|+++...|.++..+++..
T Consensus       133 ~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~  212 (511)
T 3vp6_A          133 FVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL  212 (511)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc
Confidence            3466677778888888876    4577888999998888776431            15789999999999999999988


Q ss_pred             CC---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCce
Q psy16848        122 SA---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI  198 (514)
Q Consensus       122 ~~---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~  198 (514)
                      |.   +++.++.++                                                               .| 
T Consensus       213 g~g~~~~~~v~~d~---------------------------------------------------------------~~-  228 (511)
T 3vp6_A          213 GFGTDNVILIKCNE---------------------------------------------------------------RG-  228 (511)
T ss_dssp             TSCGGGEEEECBCT---------------------------------------------------------------TS-
T ss_pred             CCCCCcEEEeecCC---------------------------------------------------------------CC-
Confidence            87   666555420                                                               00 


Q ss_pred             eeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCcccc
Q psy16848        199 GERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAIC  276 (514)
Q Consensus       199 ~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~  276 (514)
                                                                 .-|.+.+++.+++..  ..++++|++++++|++|.+.
T Consensus       229 -------------------------------------------~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd  265 (511)
T 3vp6_A          229 -------------------------------------------KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD  265 (511)
T ss_dssp             -------------------------------------------CBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC
T ss_pred             -------------------------------------------ccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc
Confidence                                                       003444444444321  22368899999999999999


Q ss_pred             CHHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcCCcccccC-CC-eEEEe-cHHHHHHHHhhc
Q psy16848        277 PLKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVG-TKNFIDTIRSYA  352 (514)
Q Consensus       277 ~l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~-~~~~~~~l~~~~  352 (514)
                      |+++|.++|++||+++++|++|+.+.... ..+  ....+ ...+|++++++||+++. .| |+++. ++.++.......
T Consensus       266 ~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~--~~~~g-~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  342 (511)
T 3vp6_A          266 PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR--HKLNG-IERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMH  342 (511)
T ss_dssp             CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG--GGGTT-GGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCC
T ss_pred             cHHHHHHHHHHcCCEEEEEccchhhHhhChhhh--hhccC-CccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccC
Confidence            99999999999999999999999665421 111  01122 23679999999999864 34 66655 455565543222


Q ss_pred             CceEec---------------cC-CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc---CCCc
Q psy16848        353 AGFIFT---------------TS-LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH---TPSH  412 (514)
Q Consensus       353 ~~~~~~---------------~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~~  412 (514)
                      ..+.+.               .. ........+..++..+..++++++.++..++.+++.+.|++. |+.+..   +..+
T Consensus       343 ~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~  422 (511)
T 3vp6_A          343 ASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT  422 (511)
T ss_dssp             CTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSS
T ss_pred             CccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeE
Confidence            211110               00 001223445555665556778889999999999999999987 887765   4455


Q ss_pred             EEEEEeCCCc----------------cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHH
Q psy16848        413 IIPIKIGNPA----------------LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLL  475 (514)
Q Consensus       413 ~~~i~l~~~~----------------~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~  475 (514)
                      ++.+++....                ...++.+.|+ ++|+.+.....  ...+..++|+++ +..++.+|++++++.|+
T Consensus       423 ~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~G~~~~~~~~--~~~~~~~lRi~~~~~~~t~~di~~ll~~i~  499 (511)
T 3vp6_A          423 NVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQP--QGDKANFFRMVISNPAATQSDIDFLIEEIE  499 (511)
T ss_dssp             CEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHH-HHTSCEEEEEE--ETTEEEEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCccccccccchhHHHHHHHHHHHHHHHHH-hcCCEEEEEEE--eCCceEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            6666543211                1236888886 77765443111  122235799999 67889999999999999


Q ss_pred             HHHHHc
Q psy16848        476 AVWKSL  481 (514)
Q Consensus       476 ~~l~~~  481 (514)
                      ++-+.+
T Consensus       500 ~~~~~~  505 (511)
T 3vp6_A          500 RLGQDL  505 (511)
T ss_dssp             HHHC--
T ss_pred             HHHHhh
Confidence            876544

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.90  E-value=1.5e-22  Score=210.73  Aligned_cols=301  Identities=14%  Similarity=0.048  Sum_probs=204.0

Q ss_pred             chHHHHHHHHHHhHcCCCc-EEEEeccc-cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEA-GLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~-~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l  136 (514)
                      .+..+++++++++++|.+. ++++++|| .++..++.++....+++.|+++..+|.+...+++..|.+++.++...    
T Consensus       132 ~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~----  207 (456)
T 2z67_A          132 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL----  207 (456)
T ss_dssp             HHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE----
T ss_pred             HHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec----
Confidence            4567889999999999865 56666677 45665665543212678888888899999988888887776543200    


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                                      .+..                                        +                   
T Consensus       208 ----------------~~~~----------------------------------------~-------------------  212 (456)
T 2z67_A          208 ----------------DGDR----------------------------------------V-------------------  212 (456)
T ss_dssp             ----------------ETTE----------------------------------------E-------------------
T ss_pred             ----------------cCCC----------------------------------------C-------------------
Confidence                            0000                                        0                   


Q ss_pred             CCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH-hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEe
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL-ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  295 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l-~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~D  295 (514)
                                               ..|.+.+++.+ +.....++++|++++++|++|.+.|+++|.++|+++|+++++|
T Consensus       213 -------------------------~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD  267 (456)
T 2z67_A          213 -------------------------YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIIN  267 (456)
T ss_dssp             -------------------------ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             -------------------------CcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEE
Confidence                                     11556666666 3211235778889999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCccccC--CCccCceEEEcCCcccc-cCCC-eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848        296 EVHAVGLYGEHGAGIGERD--GQLHNMDIISGTLGKAF-GNIG-GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAR  370 (514)
Q Consensus       296 ea~~~g~~g~~~~~~~~~~--~~~~~~di~~~S~sK~l-g~~G-G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~  370 (514)
                      ++|+....|     ..+..  ....++|++++|+||++ ++.| |+++. ++++++.+.+...+.  . ..++  ..++.
T Consensus       268 ~A~~~~~~g-----~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~--~-~~~~--~~~~~  337 (456)
T 2z67_A          268 GAYAIQNNY-----YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR--A-SATP--VVNTL  337 (456)
T ss_dssp             CTTTTTCHH-----HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC--B-CSHH--HHHHH
T ss_pred             CcchHHHHH-----hhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC--C-CCCH--HHHHH
Confidence            998733321     10110  00116899999999986 4445 99988 577888775433322  1 1222  33344


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC----CCccccCCCcEEEEEe--CCCccHHHHHHHHHHhCCe---EEe-
Q psy16848        371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTPSHIIPIKI--GNPALNTKICDMLLKEKGH---YVQ-  440 (514)
Q Consensus       371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~i~l--~~~~~~~~~~~~Ll~~~GI---~v~-  440 (514)
                      +++..+..++++++.++..++++++.+.|++.    |+.+..+. +++.+.+  ++.  ..++.+.|. ++||   .+. 
T Consensus       338 aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~v~~~~~~~~~--~~~l~~~L~-~~gi~~~rv~~  413 (456)
T 2z67_A          338 VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCISVNSD--PVEIAAKLY-NLRVTGPRGIK  413 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEECSSC--HHHHHHHHH-HTTEESCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-CeEEEEEecccH--HHHHHHHHH-HcCCCcceEEe
Confidence            44554445677888999999999999999887    77666666 6666665  332  467888885 7875   443 


Q ss_pred             -----cccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        441 -----PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       441 -----~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                           ++..|.. ....++|++++..+|++|+++++++|++++
T Consensus       414 ~~g~f~G~~~~~-~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          414 KTDHFGNCYLGT-YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             TTCHHHHTCSSC-CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             ecCccccccccc-cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence                 1222211 124689999999999999999999998753

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.90  E-value=1.6e-22  Score=206.43  Aligned_cols=255  Identities=15%  Similarity=0.128  Sum_probs=181.5

Q ss_pred             hHHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNH  135 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~  135 (514)
                      ...+++++.+++++|.+.+++   ++||++|+..++.++.+  |||+|+++. +.|......+...|..           
T Consensus        59 ~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~--~GD~Vl~~~~~~y~~~~~~~~~~g~~-----------  125 (409)
T 3jzl_A           59 EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILR--PDDELLYITGQPYDTLEEIVGIRKQG-----------  125 (409)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCC--TTCEEEECSSSCCTTHHHHHTSSSSS-----------
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcC--CCCEEEEeCCCCcHhHHHHHhcccch-----------
Confidence            347889999999999999888   78999999999988876  999999998 8887776332111100           


Q ss_pred             HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848        136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  215 (514)
Q Consensus       136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l  215 (514)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (409)
T 3jzl_A          126 --------------------------------------------------------------------------------  125 (409)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHHHhhccCCCceEEEEec----CCCCCccccCHHHHHHHHH
Q psy16848        216 VNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSH  286 (514)
Q Consensus       216 ~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~vv~~~----~~nptG~~~~l~~l~~l~~  286 (514)
                                 ...+...|++++.++.     .|++.+++.+    ++++++|++++    ++||+|.+.++++|.++|+
T Consensus       126 -----------~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai----~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~  190 (409)
T 3jzl_A          126 -----------QGSLKDFHIGYSSVPLLENGDVDFPRIAKKM----TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVK  190 (409)
T ss_dssp             -----------SSCTGGGTCEEEECCCCTTSCCCHHHHHHHC----CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHH
T ss_pred             -----------hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhc----cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHH
Confidence                       0011123444555542     2445554444    45689999999    9999999999999999999


Q ss_pred             H--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC----CeEEEecHHHHHHHHhhcCc--eEec
Q psy16848        287 Q--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI----GGYIVGTKNFIDTIRSYAAG--FIFT  358 (514)
Q Consensus       287 ~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~----GG~l~~~~~~~~~l~~~~~~--~~~~  358 (514)
                      +  +|+++++|++|+.+..+.        .....++|++++|+||++|+.    ||++++++++++.+......  ....
T Consensus       191 ~~~~~~~livD~a~~~~~~~~--------~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~  262 (409)
T 3jzl_A          191 NINPEVIVFVDNCYGEFVEYQ--------EPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGRE  262 (409)
T ss_dssp             HHCTTCEEEEECTTCTTTSSC--------CSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGG
T ss_pred             hhCCCCEEEEeCCcccccccC--------CccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccccc
Confidence            9  999999999998554211        111346899999999999753    59999999999988764322  2112


Q ss_pred             cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHH
Q psy16848        359 TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLK  433 (514)
Q Consensus       359 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~  433 (514)
                      .+.+.....++...++.     .+.++++..+++.++.+.|+++|+.+.+..++     ++.+.+++.....++++.|. 
T Consensus       263 ~g~~~~~~~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~~~~~~~~~~L~-  336 (409)
T 3jzl_A          263 AGASLYSLLEMYQGFFL-----APHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAIQ-  336 (409)
T ss_dssp             CCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCHHHHHHHHHHHH-
T ss_pred             ccccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCHHHHHHHHHHHH-
Confidence            22222112334444432     23577888899999999999998877544444     78888887777788999995 


Q ss_pred             hCC
Q psy16848        434 EKG  436 (514)
Q Consensus       434 ~~G  436 (514)
                      +..
T Consensus       337 ~~~  339 (409)
T 3jzl_A          337 AAS  339 (409)
T ss_dssp             HTS
T ss_pred             hcC
Confidence            554

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.90  E-value=2.9e-22  Score=205.20  Aligned_cols=256  Identities=17%  Similarity=0.172  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848         61 FHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        61 ~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l  136 (514)
                      ..+++++++++++|.+.+++   ++||++|+..++.++++  |||+|+++. +.|......+...+..   +.       
T Consensus        75 g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~--pGD~Vl~~~~~~y~~~~~~~g~~~~~---~~-------  142 (427)
T 3hvy_A           75 GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLR--PNDTMMSICGMPYDTLHDIIGMDDSK---KV-------  142 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCC--TTCEEEECSSSCCGGGHHHHTCCTTC---CS-------
T ss_pred             hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcC--CCCEEEEeCCCCchhHHHHhccccch---hh-------
Confidence            47899999999999999988   79999999999998876  999999998 7777654221000000   00       


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (427)
T 3hvy_A          143 --------------------------------------------------------------------------------  142 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeeecchHHHHhhCCCCEEEecC----CChhHHHHHHhhccCCCceEEEEec----CCCCCccccCHHHHHHHHHH-
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYRH----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ-  287 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~~----~d~~~l~~~l~~~~~~~~~~vv~~~----~~nptG~~~~l~~l~~l~~~-  287 (514)
                                 ..+...|++++.++.    .|++.+++.+++  .+++++|++++    ++||+|.+.++++|.++|++ 
T Consensus       143 -----------~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~--~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~  209 (427)
T 3hvy_A          143 -----------GSLREYGVKYKMVDLKDGKVDINTVKEELKK--DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREV  209 (427)
T ss_dssp             -----------CCTGGGTCEEEECCCBTTBCCHHHHHHHHHH--CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred             -----------hHHHHcCCEEEEecCCCCCcCHHHHHHHhhC--CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHh
Confidence                       001112334444443    366667776653  14589999999    99999999999999999999 


Q ss_pred             -cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhc--CceEeccC
Q psy16848        288 -HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYA--AGFIFTTS  360 (514)
Q Consensus       288 -~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~--~~~~~~~~  360 (514)
                       +|+++++|++|+.+....        .....++|++++|+||++++    .||++++++++++.++...  ...+...+
T Consensus       210 ~~g~~livD~a~~~~~~~~--------~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~  281 (427)
T 3hvy_A          210 NENVIVFVDNCYGEFVEEK--------EPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECG  281 (427)
T ss_dssp             CSSSEEEEECTTCTTTSSS--------CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCC
T ss_pred             CCCCEEEEECCccccccCC--------CCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccC
Confidence             899999999998554211        11133689999999999986    4599999999999987743  22211222


Q ss_pred             CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHHhC
Q psy16848        361 LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLKEK  435 (514)
Q Consensus       361 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~~~  435 (514)
                      .+...+..+...+..     .+.++++..+++.++.+.|+++|+.+.+..++     ++.+.+++.....++++.|. ..
T Consensus       282 ~~~~~a~~~~~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~~~~~~~f~~~l~-~~  355 (427)
T 3hvy_A          282 STFGVMRSLYEGLFM-----APHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFNDEKKLIDFIKGIQ-TA  355 (427)
T ss_dssp             CCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSSHHHHHHHHHHHH-HT
T ss_pred             CCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCCHHHHHHHHHHhc-cc
Confidence            222223333444432     23477888899999999999998877554444     88899887666778888884 44

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.89  E-value=2.9e-22  Score=205.19  Aligned_cols=256  Identities=16%  Similarity=0.165  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHHH
Q psy16848         61 FHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        61 ~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~l  136 (514)
                      ..+++++++++++|.+.+++   ++||++|+..++.++.+  |||+|+++. +.|......+   |.+.... .      
T Consensus        74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~--pGD~Vl~~~~~~y~~~~~~~---g~~~~~~-~------  141 (427)
T 3i16_A           74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLR--PGNTMLSVCGEPYDTLHDVI---GITENSN-M------  141 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCC--TTCEEEESSSSCCGGGHHHH---TCSCCCS-S------
T ss_pred             HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhC--CCCEEEEeCCCccHHHHHHH---hccccch-H------
Confidence            47899999999999999888   89999999999988876  999999998 8887765322   1000000 0      


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (427)
T 3i16_A          142 --------------------------------------------------------------------------------  141 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHHHhhccCCCceEEEEec----CCCCCccccCHHHHHHHHHH
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ  287 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~vv~~~----~~nptG~~~~l~~l~~l~~~  287 (514)
                                 ..+...|.+++.++.     .|++.+++.+++  .+++++|++++    |+||+|.+.++++|.++|++
T Consensus       142 -----------~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~--~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~  208 (427)
T 3i16_A          142 -----------GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKE--DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKN  208 (427)
T ss_dssp             -----------CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHT--CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred             -----------HHHHHcCCEEEEecCccCCCcCHHHHHHHhhC--CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHH
Confidence                       000112334444442     366667776653  14689999999    99999999999999999999


Q ss_pred             --cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhcCceEeccCC
Q psy16848        288 --HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYAAGFIFTTSL  361 (514)
Q Consensus       288 --~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~~~~~~~~~~  361 (514)
                        +|+++++|++|+.+....        .....++|++++|+||.+|+    .||++++++++++.++........+...
T Consensus       209 ~~~g~~livD~a~~~~~~~~--------~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~  280 (427)
T 3i16_A          209 IRKDIICFVDNCYGEFMDTK--------EPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGEC  280 (427)
T ss_dssp             HCTTSEEEEECTTTTTSSSS--------CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGC
T ss_pred             hCCCCEEEEECCCccccccC--------CccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccC
Confidence              999999999998554211        11133689999999999986    3599999999999988732211112111


Q ss_pred             cH-HH-HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHHh
Q psy16848        362 PP-TV-LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       362 ~~-~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      .+ .. ...+...++.     ...++++..+++.++.+.|+++++.+.++.++     ++.+.+++.....++++.|. .
T Consensus       281 ~~~~~~a~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~~~~~~f~~~l~-~  354 (427)
T 3i16_A          281 GSTFGVVRSMYQGLFL-----APHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDKDKLIEFCKGIQ-T  354 (427)
T ss_dssp             CCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSHHHHHHHHHHHH-H
T ss_pred             CccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCHHHHHHHHHHHh-h
Confidence            11 22 2333333332     23578888999999999999998877555555     88899987667788999985 5


Q ss_pred             C
Q psy16848        435 K  435 (514)
Q Consensus       435 ~  435 (514)
                      .
T Consensus       355 ~  355 (427)
T 3i16_A          355 G  355 (427)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.89  E-value=1.5e-21  Score=203.92  Aligned_cols=305  Identities=11%  Similarity=0.058  Sum_probs=206.6

Q ss_pred             chHHHHHHHHHHhHcCCC-----------cEEEEeccccccccchhhcccc-----------------CCCceEEecCcc
Q psy16848         59 SLFHEKLEEDVAKLHQKE-----------AGLVFTSCYVANDSTLFTLGKM-----------------IPGLHYISDAGN  110 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~-----------~~i~~~sGt~a~~~~l~~l~~~-----------------~~gd~v~~~~~~  110 (514)
                      .++.+++.+++++++|.+           .++++++||++|+.++.+....                 .++++|+++..+
T Consensus       112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~  191 (475)
T 3k40_A          112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA  191 (475)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred             HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence            456666777788888876           3688899999999888776320                 145789999999


Q ss_pred             chhhhhhhhcCCCCeeeccCC----ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccc
Q psy16848        111 HASMIQGIRNSSAPKIIYRHN----DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  186 (514)
Q Consensus       111 h~~~~~~~~~~~~~~~~~~~~----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (514)
                      |.++..+++..|.+++.++.+    |+++|++.|.+...                                         
T Consensus       192 H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~-----------------------------------------  230 (475)
T 3k40_A          192 HSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVA-----------------------------------------  230 (475)
T ss_dssp             CHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHH-----------------------------------------
T ss_pred             hHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHH-----------------------------------------
Confidence            999999999888888777652    45555554433210                                         


Q ss_pred             cccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEe
Q psy16848        187 AVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFE  266 (514)
Q Consensus       187 ~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~  266 (514)
                                                                                           ....+.+++++
T Consensus       231 ---------------------------------------------------------------------~~~~~~~v~~~  241 (475)
T 3k40_A          231 ---------------------------------------------------------------------EGLIPFYAVVT  241 (475)
T ss_dssp             ---------------------------------------------------------------------TTCEEEEEEEE
T ss_pred             ---------------------------------------------------------------------CCCccEEEEEE
Confidence                                                                                 01125678889


Q ss_pred             cCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEec-H
Q psy16848        267 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGT-K  342 (514)
Q Consensus       267 ~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~-~  342 (514)
                      .++|++|.+.|+++|.++|++||+++++|++|+.+.. .......  ..+ ...+|.+++|+||+++. .| |+++.+ +
T Consensus       242 ~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~--~~g-i~~~Ds~~~~~hK~l~~p~g~g~l~~~~~  318 (475)
T 3k40_A          242 LGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHL--MKG-IESADSFNFNPHKWMLVNFDCSAMWLKDP  318 (475)
T ss_dssp             BSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGG--GTT-GGGCSEEEECHHHHSSCCSSCEEEEESSG
T ss_pred             ecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHH--hcC-cccCCEEEECchhccCCCCceEEEEEeCH
Confidence            9999999999999999999999999999999986533 2111111  112 12579999999998864 34 666554 4


Q ss_pred             HHH-HHHHhhcCce------------EeccCCc-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        343 NFI-DTIRSYAAGF------------IFTTSLP-PTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       343 ~~~-~~l~~~~~~~------------~~~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      ..+ +.+.......            .++...+ +.......+++..+..++++++.++..++++++.+.|++. ++++.
T Consensus       319 ~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~  398 (475)
T 3k40_A          319 SWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA  398 (475)
T ss_dssp             GGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred             HHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            443 2221110000            0000011 1223444555665556678889999999999999999998 88776


Q ss_pred             cC-CCcEEEEEeCC-CccHHHHHHHHHHhCCe-EEecccCCCCCCCCcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHc
Q psy16848        408 HT-PSHIIPIKIGN-PALNTKICDMLLKEKGH-YVQPINYPTVPVGEEKIRLAPTP-FHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       408 ~~-~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI-~v~~~~~~~~~~~~~~iRl~~~~-~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .+ ..+++.+.++. .....++.++|. ++|+ .+.+...    .+..++|++++. .+|++|+++++++|+++.+++
T Consensus       399 ~~~~~~iv~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~----~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~  471 (475)
T 3k40_A          399 AEINMGLVCFRLKGSNERNEALLKRIN-GRGHIHLVPAKI----KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM  471 (475)
T ss_dssp             SCCBTTEEEEEESSCHHHHHHHHHHHH-HHTSCBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEEEeCCchHHHHHHHHHHH-hCCcEEEEeeEE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            44 45677887753 334678889996 5554 4444332    346799999864 458999999999999988765

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.89  E-value=7.3e-22  Score=214.27  Aligned_cols=310  Identities=15%  Similarity=0.104  Sum_probs=210.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccc-cccccchhhccccCCCceEEecCccchhhhhh-hhcCCCCeeeccCCChHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQG-IRNSSAPKIIYRHNDVNHL  136 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~-~~~~~~~~~~~~~~d~~~l  136 (514)
                      .....++++.+++++|.+++++++||+ +++.+++.++..  +||.|+++.+.|.++..+ ++..|++++.++... +  
T Consensus       172 ~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~--pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~-~--  246 (730)
T 1c4k_A          172 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS--NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR-N--  246 (730)
T ss_dssp             BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE-C--
T ss_pred             hHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc-c--
Confidence            457899999999999999998888887 679999988876  999999999999999998 899999887654310 0  


Q ss_pred             HHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        137 TQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                                         .|...                                    |                   
T Consensus       247 -------------------~~~i~------------------------------------g-------------------  252 (730)
T 1c4k_A          247 -------------------PYGFI------------------------------------G-------------------  252 (730)
T ss_dssp             -------------------TTCCE------------------------------------E-------------------
T ss_pred             -------------------ccCcc------------------------------------C-------------------
Confidence                               00000                                    0                   


Q ss_pred             CCceeeecchHHHHhhCCCCEEEecCCChhHH-----HHHHhhcc-----CCCc-eEEEEecCCCCCccccCHHHHHHHH
Q psy16848        217 NPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL-----TQVLENMD-----VKIP-KLVAFETVHSMTGAICPLKELCEVS  285 (514)
Q Consensus       217 ~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l-----~~~l~~~~-----~~~~-~~vv~~~~~nptG~~~~l~~l~~l~  285 (514)
                                               .-|.+.+     ++.+++..     +.++ ++++++++ |++|.+.++++|.++|
T Consensus       253 -------------------------~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la  306 (730)
T 1c4k_A          253 -------------------------GIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRI  306 (730)
T ss_dssp             -------------------------EECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHH
T ss_pred             -------------------------CCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHH
Confidence                                     0033333     44444320     1112 78888887 6899999999999999


Q ss_pred             HHcCCEEEEeccccccc-cCCCCCCccccCCCccCce----EEEcCCcccccCC--CeEEEecHHHH---------HHHH
Q psy16848        286 HQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMD----IISGTLGKAFGNI--GGYIVGTKNFI---------DTIR  349 (514)
Q Consensus       286 ~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~d----i~~~S~sK~lg~~--GG~l~~~~~~~---------~~l~  349 (514)
                      +++|+++++|++|+.+. ++...++.........+.|    ++++|+||++++.  ||+++.+++.+         ..+.
T Consensus       307 ~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~  386 (730)
T 1c4k_A          307 GHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN  386 (730)
T ss_dssp             GGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH
T ss_pred             HHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH
Confidence            99999999999997432 2221110001110011344    9999999999753  36775443321         1222


Q ss_pred             hhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh-C-CCccccCC-----------------
Q psy16848        350 SYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ-I-GFPVEHTP-----------------  410 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-----------------  410 (514)
                      ... ....+++.+...+++..++++.+..+...+..++..++.+++++.|++ . |+.+..+.                 
T Consensus       387 ~~~-~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~  465 (730)
T 1c4k_A          387 NSF-NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMAN  465 (730)
T ss_dssp             HHH-HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTT
T ss_pred             HHH-HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccc
Confidence            111 111134567777777777887765434567788899999999999988 3 66553321                 


Q ss_pred             --------------------Cc---E----EEEEeCC-----------CccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        411 --------------------SH---I----IPIKIGN-----------PALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       411 --------------------~~---~----~~i~l~~-----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                                          ..   +    +.+..+.           +....++.+.|. ++||.+...       +..
T Consensus       466 ~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~-e~GI~v~~~-------~~~  537 (730)
T 1c4k_A          466 NIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLR-DHGIIPEKS-------DLN  537 (730)
T ss_dssp             CGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHH-HTTCCCSEE-------CSS
T ss_pred             cchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHH-HCCcEEEEC-------CCC
Confidence                                11   1    3455431           235678888895 789988532       346


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+|++++..+|++++++++++|+++.+.+.
T Consensus       538 ~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          538 SILFLMTPAETPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            899999999999999999999999987663

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.89  E-value=1.3e-22  Score=210.45  Aligned_cols=291  Identities=16%  Similarity=0.148  Sum_probs=199.1

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEecc-ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccC--CChHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSC-YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRH--NDVNH  135 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sG-t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~--~d~~~  135 (514)
                      .....++++++++ +|.++.+++++| |+++..++.++..  +||.|+++.+.|.++..++...|++++.++.  ++.  
T Consensus        56 ~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~--~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~--  130 (446)
T 2x3l_A           56 EEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQ--KKGDILMARNVHKSVLHALDISQQEGHFIETHQSPL--  130 (446)
T ss_dssp             SSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTT--SSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTT--
T ss_pred             chHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcC--CCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccc--
Confidence            4567899999999 998776666665 5789999988866  9999999999999999999888888776543  100  


Q ss_pred             HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848        136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  215 (514)
Q Consensus       136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l  215 (514)
                                                              +|..                                    
T Consensus       131 ----------------------------------------~~~~------------------------------------  134 (446)
T 2x3l_A          131 ----------------------------------------TNHY------------------------------------  134 (446)
T ss_dssp             ----------------------------------------TSSE------------------------------------
T ss_pred             ----------------------------------------cCcC------------------------------------
Confidence                                                    0000                                    


Q ss_pred             cCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEe
Q psy16848        216 VNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  295 (514)
Q Consensus       216 ~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~D  295 (514)
                                            -.+   |.+.+       ..++++++++++ .|++|.+.|+++|.++|++||+++|+|
T Consensus       135 ----------------------~~~---d~~~l-------~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livD  181 (446)
T 2x3l_A          135 ----------------------NKV---NLSRL-------NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLID  181 (446)
T ss_dssp             ----------------------EEE---EC--------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEE
T ss_pred             ----------------------CCC---CHHHH-------cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEc
Confidence                                  000   11111       124578999998 677999999999999999999999999


Q ss_pred             ccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHHHHH--HHHhhcCceEeccCCcHHHHHHHHH
Q psy16848        296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKNFID--TIRSYAAGFIFTTSLPPTVLAGARE  371 (514)
Q Consensus       296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~a~~~  371 (514)
                      |+|+. ...-.+.   +......++|++++|+||+++ +.| |++++++++++  .+......+ .+++.+...++++.+
T Consensus       182 ea~~~-~~~f~~~---~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~-~~~s~~~~~~aal~~  256 (446)
T 2x3l_A          182 EAHGA-HFGLQGF---PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF-QTSSPSYLIMASLES  256 (446)
T ss_dssp             CTTCT-TTTSTTS---CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH-SCSSCCHHHHHHHHH
T ss_pred             chhhh-hhccCCC---CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH-cCCCchHHHHHHHHH
Confidence            99984 2211111   111112357999999999664 445 99988877654  332211111 123455666666666


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCC
Q psy16848        372 AIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG  450 (514)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~  450 (514)
                      +++.+...+.+++.++.+++.+++++.    ++.+..+. ...+++.++ +.+..++.+.|. ++||.+...       +
T Consensus       257 a~~~l~~~g~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~-~~~~~~l~~~L~-~~GI~v~~~-------g  323 (446)
T 2x3l_A          257 AAQFYKTYDSTLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYE-GFTGHDIQNWFM-NAHIYLELA-------D  323 (446)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECT-TSCHHHHHHHHH-HTTEEESEE-------C
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeC-CcCHHHHHHHHH-HCCCEEEec-------C
Confidence            676665443334666777777777666    67665543 336677776 345778999996 779998611       2


Q ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+++|++++..+|++++ +++++|+++++.+.
T Consensus       324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~~  354 (446)
T 2x3l_A          324 DYQALAILPLWHHDDTY-LFDSLLRKIEDMIL  354 (446)
T ss_dssp             SSCEEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred             CCEEEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence            35799999988899999 99999999987664

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.88  E-value=1e-20  Score=199.49  Aligned_cols=306  Identities=14%  Similarity=0.147  Sum_probs=204.0

Q ss_pred             chHHHHHHHHHHhHcCCC----cEEEEeccccccccchhhccc------cCCC-----c-eEEecCccchhhhhhhhcCC
Q psy16848         59 SLFHEKLEEDVAKLHQKE----AGLVFTSCYVANDSTLFTLGK------MIPG-----L-HYISDAGNHASMIQGIRNSS  122 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~----~~i~~~sGt~a~~~~l~~l~~------~~~g-----d-~v~~~~~~h~~~~~~~~~~~  122 (514)
                      .++..++.+++++++|.+    .++++++||+|+..++.++..      ..+|     + .|+++...|.++..+++..|
T Consensus       131 ~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g  210 (504)
T 2okj_A          131 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG  210 (504)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcC
Confidence            445667778889999865    467778899999988877642      0145     6 79999999999998888776


Q ss_pred             C---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCcee
Q psy16848        123 A---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG  199 (514)
Q Consensus       123 ~---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~  199 (514)
                      .   +++.++.++                                                               .+  
T Consensus       211 ~g~~~v~~v~~~~---------------------------------------------------------------~~--  225 (504)
T 2okj_A          211 FGTDNVILIKCNE---------------------------------------------------------------RG--  225 (504)
T ss_dssp             SCGGGEEEECBCT---------------------------------------------------------------TS--
T ss_pred             CCcccEEEEecCC---------------------------------------------------------------CC--
Confidence            5   454443320                                                               00  


Q ss_pred             eecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCccccC
Q psy16848        200 ERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICP  277 (514)
Q Consensus       200 ~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~  277 (514)
                                                                .-|.+.+++.+++..  ..++++|++++++|++|.+.|
T Consensus       226 ------------------------------------------~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~  263 (504)
T 2okj_A          226 ------------------------------------------KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP  263 (504)
T ss_dssp             ------------------------------------------CBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC
T ss_pred             ------------------------------------------CCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC
Confidence                                                      014455555554321  224789999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecH-HHHHHHHhhcC
Q psy16848        278 LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTK-NFIDTIRSYAA  353 (514)
Q Consensus       278 l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~-~~~~~l~~~~~  353 (514)
                      +++|.++|++||+++++|++|+.+... ....  ....++ ..+|+++.|+||+++ +.| |+++.++ ++++.......
T Consensus       264 l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~--~~~~g~-~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~  340 (504)
T 2okj_A          264 IQEIADICEKYNLWLHVDAAWGGGLLMSRKHR--HKLNGI-ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCA  340 (504)
T ss_dssp             HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG--GGGTTG-GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCC
T ss_pred             HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH--hhcCCc-ccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCC
Confidence            999999999999999999999965542 1110  112221 368999999999997 434 8888765 56654322222


Q ss_pred             ceEecc-------------------CCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc---CC
Q psy16848        354 GFIFTT-------------------SLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH---TP  410 (514)
Q Consensus       354 ~~~~~~-------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~  410 (514)
                      .+.++.                   ......+.++..++   ..++++++.++..++++++.+.|++. ++++..   +.
T Consensus       341 ~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~l---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~  417 (504)
T 2okj_A          341 GYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK---GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE  417 (504)
T ss_dssp             SSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCS
T ss_pred             ccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence            111100                   11234444443433   34567788999999999999999987 777764   44


Q ss_pred             CcEEEEEe-CCC---------------ccHHHHHHHHHHhCCe-EEecccCCCCCCCCcEEEEEeC-CCCCHHHHHHHHH
Q psy16848        411 SHIIPIKI-GNP---------------ALNTKICDMLLKEKGH-YVQPINYPTVPVGEEKIRLAPT-PFHTREMIDKFVT  472 (514)
Q Consensus       411 ~~~~~i~l-~~~---------------~~~~~~~~~Ll~~~GI-~v~~~~~~~~~~~~~~iRl~~~-~~~t~e~id~~~~  472 (514)
                      .+++.+.. +..               ....++.+.|. ++|+ .+.+...   .....++|++++ ..+|++|++++++
T Consensus       418 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~~---~~~~~~lRis~~~~~~t~edi~~~~~  493 (504)
T 2okj_A          418 HTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQPQ---GDKANFFRMVISNPAATQSDIDFLIE  493 (504)
T ss_dssp             SSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHH-HHTSCEEEEEEE---TTEEEEEEECCCCTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHH-hCCcEEEEeeEE---CCceEEEEEEeCCCCCCHHHHHHHHH
Confidence            55666654 321               01356788886 7785 4443222   111358999996 7889999999999


Q ss_pred             HHHHHHHHc
Q psy16848        473 DLLAVWKSL  481 (514)
Q Consensus       473 ~l~~~l~~~  481 (514)
                      +|+++++++
T Consensus       494 ~l~~~~~~~  502 (504)
T 2okj_A          494 EIERLGQDL  502 (504)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHHH
Confidence            999887653

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.88  E-value=9.4e-22  Score=203.67  Aligned_cols=205  Identities=19%  Similarity=0.202  Sum_probs=140.7

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc-ccccccCCCCCCccccCCCccCceEEEcCCcc-----c
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV-HAVGLYGEHGAGIGERDGQLHNMDIISGTLGK-----A  330 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea-~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK-----~  330 (514)
                      ++++++|+++++ |++|.+.|+++|.++|+++|+++|+|.. +++|...     .   .+ ..++|++++|.+|     +
T Consensus       194 ~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~-----~---~~-~~g~D~~~~s~kk~~~~~~  263 (438)
T 1wyu_A          194 GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK-----P---PG-AYGADIAVGDGQSLGLPMG  263 (438)
T ss_dssp             CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-----C---HH-HHTCSEEEEECTTTTCCCG
T ss_pred             CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-----C---Cc-cCCCCEEEECCcccCCCcc
Confidence            456899999999 9999999999999999999999997743 4444321     1   11 2367999988444     3


Q ss_pred             ccCCC-eEEEecHHHHHHHHhhcC----------ceEe--------------ccCC---cHHHHHHHHHHHHHhhhchHH
Q psy16848        331 FGNIG-GYIVGTKNFIDTIRSYAA----------GFIF--------------TTSL---PPTVLAGAREAIRILSSQEGV  382 (514)
Q Consensus       331 lg~~G-G~l~~~~~~~~~l~~~~~----------~~~~--------------~~~~---~~~~~~a~~~~l~~~~~~~~~  382 (514)
                      ++++| |++++++++++.+.....          .+.+              +.+.   +.....++...+..+..++++
T Consensus       264 ~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~  343 (438)
T 1wyu_A          264 FGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR  343 (438)
T ss_dssp             GGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHH
Confidence            43335 999999887766532110          0111              0111   112221112225544455677


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCccccCCCc--EEEEEeCCCccHHHHHHHHHHhCCeEE--ecccCCCCCCCCcEEEEE
Q psy16848        383 ELRAKHQDIVAYLRNELIQI-GFPVEHTPSH--IIPIKIGNPALNTKICDMLLKEKGHYV--QPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v--~~~~~~~~~~~~~~iRl~  457 (514)
                      ++.++.+++++++.+.|+++ |+.+..+...  ++.+.++  .+..++.+.|. ++||.+  .++.++.    ++++|++
T Consensus       344 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~-~~gi~v~~~~~~~~~----~~~lRis  416 (438)
T 1wyu_A          344 EVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP--KDPEAVRRALA-ERGFHGATPVPREYG----ENLALFA  416 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS--SCHHHHHHHHH-HTTCCCCEECCTTSC----SSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC--CCHHHHHHHHH-HCCceeccccccccC----CCeEEEE
Confidence            88999999999999999998 8887654322  3345443  35788999996 889998  5555321    5699999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHH
Q psy16848        458 PTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++..+|++|+++++++|++++
T Consensus       417 ~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          417 ATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHC
T ss_pred             ecccCCHHHHHHHHHHHHHHh
Confidence            999999999999999998763

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.8e-21  Score=203.79  Aligned_cols=305  Identities=13%  Similarity=0.062  Sum_probs=207.8

Q ss_pred             cchHHHHHHHHHHhHcCCC------------cEEEEeccccccccchhhccc-----------------cCCCceEEecC
Q psy16848         58 NSLFHEKLEEDVAKLHQKE------------AGLVFTSCYVANDSTLFTLGK-----------------MIPGLHYISDA  108 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~------------~~i~~~sGt~a~~~~l~~l~~-----------------~~~gd~v~~~~  108 (514)
                      ..++.+++.+++++++|.+            .+++++|||++|+.++.+...                 ..++++|+++.
T Consensus       116 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  195 (481)
T 4e1o_A          116 CTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASD  195 (481)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEET
T ss_pred             HHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcC
Confidence            3456666777788888865            347888899999988876542                 12678999999


Q ss_pred             ccchhhhhhhhcCCCCeeeccCC-----ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848        109 GNHASMIQGIRNSSAPKIIYRHN-----DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  183 (514)
Q Consensus       109 ~~h~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (514)
                      .+|.++..+++..|.+++.++.+     |+++|++.|.+...                                      
T Consensus       196 ~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~--------------------------------------  237 (481)
T 4e1o_A          196 QAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQ--------------------------------------  237 (481)
T ss_dssp             TSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHH--------------------------------------
T ss_pred             cchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHh--------------------------------------
Confidence            99999999998888887776642     44555544432211                                      


Q ss_pred             ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEE
Q psy16848        184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLV  263 (514)
Q Consensus       184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v  263 (514)
                                                                                              ....+.++
T Consensus       238 ------------------------------------------------------------------------~g~~~~~v  245 (481)
T 4e1o_A          238 ------------------------------------------------------------------------RGLVPVFV  245 (481)
T ss_dssp             ------------------------------------------------------------------------TTCEEEEE
T ss_pred             ------------------------------------------------------------------------CCCCcEEE
Confidence                                                                                    11125678


Q ss_pred             EEecCCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEe
Q psy16848        264 AFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVG  340 (514)
Q Consensus       264 v~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~  340 (514)
                      +++.++|++|.+.|+++|.++|++||+++++|++|+.+.. +......  ..+ ...+|.++.++||+++. .| |+++.
T Consensus       246 v~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~--~~g-i~~aDsi~~~~hK~l~~p~g~g~l~~  322 (481)
T 4e1o_A          246 CATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGF--LKG-IEYADSFTFNPSKWMMVHFDCTGFWV  322 (481)
T ss_dssp             EEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGG--GTT-GGGCSEEEECHHHHSSCCSSCEEEEE
T ss_pred             EEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHH--hcC-cccCCEEEEChHHhcCCCCceEEEEE
Confidence            8899999999999999999999999999999999995532 2211111  112 12469999999999865 34 55554


Q ss_pred             -cHHHHHHHHhhcCceEec---------------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy16848        341 -TKNFIDTIRSYAAGFIFT---------------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G  403 (514)
Q Consensus       341 -~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  403 (514)
                       ++..+.........+...               .+.+ .......+++..+..++++++.++..++++++.+.|++. +
T Consensus       323 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g  401 (481)
T 4e1o_A          323 KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPS  401 (481)
T ss_dssp             SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence             455443221111111100               0111 123344445555555677889999999999999999998 8


Q ss_pred             CccccC-CCcEEEEEeCC-CccHHHHHHHHHHhCC-eEEecccCCCCCCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHH
Q psy16848        404 FPVEHT-PSHIIPIKIGN-PALNTKICDMLLKEKG-HYVQPINYPTVPVGEEKIRLAPTPF-HTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       404 ~~~~~~-~~~~~~i~l~~-~~~~~~~~~~Ll~~~G-I~v~~~~~~~~~~~~~~iRl~~~~~-~t~e~id~~~~~l~~~l~  479 (514)
                      +++..+ ..+++.+.++. .....++.++|. ++| +.+.+...    .+..++|+++... +|++|+++++++|+++++
T Consensus       402 ~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~----~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  476 (481)
T 4e1o_A          402 FEIPAKRHLGLVVFRLKGPNSLTENVLKEIA-KAGRLFLIPATI----QDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT  476 (481)
T ss_dssp             EECCSCCCSSEEEEEESSCHHHHHHHHHHHH-HHCSSBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEecCCceeEEEEEeCCchHHHHHHHHHHH-hCCeEEEEeeEE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            877543 45677888754 334678888986 666 45444332    3456899997744 489999999999999887


Q ss_pred             Hc
Q psy16848        480 SL  481 (514)
Q Consensus       480 ~~  481 (514)
                      ++
T Consensus       477 ~l  478 (481)
T 4e1o_A          477 LI  478 (481)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.88  E-value=1.9e-22  Score=202.84  Aligned_cols=323  Identities=12%  Similarity=0.045  Sum_probs=216.8

Q ss_pred             CCCChhHHHHHHHHHHHhCCCCCC----cCcccCcchHHHHHHHHHHhHcCCCc---EEEE-eccccccccchhhccccC
Q psy16848         28 YKVPKGGRKCLGEALEKFGTGAGG----TRNISGNSLFHEKLEEDVAKLHQKEA---GLVF-TSCYVANDSTLFTLGKMI   99 (514)
Q Consensus        28 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~---~i~~-~sGt~a~~~~l~~l~~~~   99 (514)
                      +.-+|+|.+++.+.+..+..+..+    +.......+..++.++.+++++|.+.   ++|+ .|||+++.+++..+....
T Consensus        22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~  101 (377)
T 3e77_A           22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLK  101 (377)
T ss_dssp             CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGS
T ss_pred             CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCC
Confidence            334789999999988754432221    11111135677889999999999753   4554 478899888888886533


Q ss_pred             CCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCce
Q psy16848        100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL  179 (514)
Q Consensus       100 ~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (514)
                      +||++++-...|.+.. ..                                                    +.++++|..
T Consensus       102 ~Gd~v~~~~~g~~~~~-~~----------------------------------------------------~~a~~~G~~  128 (377)
T 3e77_A          102 AGRCADYVVTGAWSAK-AA----------------------------------------------------EEAKKFGTI  128 (377)
T ss_dssp             TTCEEEECCCSHHHHH-HH----------------------------------------------------HHHTTTSEE
T ss_pred             CCCeEEEEECCHHHHH-HH----------------------------------------------------HHHHHhCCc
Confidence            4898876666655431 10                                                    111122211


Q ss_pred             EEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-ChhHHHHHHhhccCC
Q psy16848        180 TFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQVLENMDVK  258 (514)
Q Consensus       180 ~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~l~~~~~~  258 (514)
                      +                                                         +.++.+ +...+.+.++...++
T Consensus       129 ~---------------------------------------------------------~~~~~~~~~~~~~~~~~~~i~~  151 (377)
T 3e77_A          129 N---------------------------------------------------------IVHPKLGSYTKIPDPSTWNLNP  151 (377)
T ss_dssp             E---------------------------------------------------------ECSCCCSSSCSCCCGGGCCCCT
T ss_pred             e---------------------------------------------------------EEeccCCCcCCCCChHHhccCC
Confidence            1                                                         111100 000000112334456


Q ss_pred             CceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-eE
Q psy16848        259 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-GY  337 (514)
Q Consensus       259 ~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~  337 (514)
                      ++++|.+++..|.+|.+.|+     +|+++|+++++|.++++|..        +.+..  +.+++++|.+|++|+.| |+
T Consensus       152 ~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~--------~id~~--~~~~~~~s~~K~~gp~G~g~  216 (377)
T 3e77_A          152 DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSK--------PVDVS--KFGVIFAGAQKNVGSAGVTV  216 (377)
T ss_dssp             TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSS--------CCCGG--GCSEEEEEGGGTTSCTTCEE
T ss_pred             CccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCC--------CCchh--hcCEEEEecccccCCCccEE
Confidence            78999999999999999998     47789999999999998764        22221  23467789999999989 99


Q ss_pred             EEecHHHHHHHHhhcCce----------EeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16848        338 IVGTKNFIDTIRSYAAGF----------IFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQI-GFP  405 (514)
Q Consensus       338 l~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~  405 (514)
                      ++.++++++.+.+....+          ....+.+.....++.++++++.+. +++++.++.+++.+++.+.|+++ |+.
T Consensus       217 l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~  296 (377)
T 3e77_A          217 VIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFY  296 (377)
T ss_dssp             EEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSE
T ss_pred             EEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence            988877654332211110          001255677788889999988777 78999999999999999999998 765


Q ss_pred             ccc----CCCc-EEEEEeCCC---cc-HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        406 VEH----TPSH-IIPIKIGNP---AL-NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       406 ~~~----~~~~-~~~i~l~~~---~~-~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +..    ..++ ++.|.+++.   .+ ...+.+.+. ++||.+.++...     .+.+|+|+...+|++|++++++.|++
T Consensus       297 ~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~-----~g~iRiS~~~~~t~edId~l~~al~~  370 (377)
T 3e77_A          297 VCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHRS-----VGGIRASLYNAVTIEDVQKLAAFMKK  370 (377)
T ss_dssp             ECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCTT-----TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCCc-----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            322    1233 577888752   11 246777784 899998876531     34699999999999999999999999


Q ss_pred             HHHHc
Q psy16848        477 VWKSL  481 (514)
Q Consensus       477 ~l~~~  481 (514)
                      ++++-
T Consensus       371 ~~~~~  375 (377)
T 3e77_A          371 FLEMH  375 (377)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98763

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.87  E-value=9.3e-21  Score=200.17  Aligned_cols=308  Identities=14%  Similarity=0.129  Sum_probs=202.2

Q ss_pred             cchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccc------cCCCc------eEEecCccchhhhhhhhcCCC
Q psy16848         58 NSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGK------MIPGL------HYISDAGNHASMIQGIRNSSA  123 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~------~~~gd------~v~~~~~~h~~~~~~~~~~~~  123 (514)
                      ..++..++++++++++|.+  .+++++|||+|+..++.++..      ..+||      .|++++..|.++..+++..|.
T Consensus       146 ~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~  225 (515)
T 2jis_A          146 FVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGL  225 (515)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCC
Confidence            3566778889999999975  567788899999888877631      01465      899999999999988887766


Q ss_pred             ---CeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceee
Q psy16848        124 ---PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGE  200 (514)
Q Consensus       124 ---~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~  200 (514)
                         +++.++.++                                                               .+   
T Consensus       226 g~~~v~~v~~~~---------------------------------------------------------------~~---  239 (515)
T 2jis_A          226 GTDSVRVVKADE---------------------------------------------------------------RG---  239 (515)
T ss_dssp             CGGGEEEECBCT---------------------------------------------------------------TS---
T ss_pred             CCCcEEEEecCC---------------------------------------------------------------CC---
Confidence               554443310                                                               00   


Q ss_pred             ecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecCCCCCccccCH
Q psy16848        201 RDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETVHSMTGAICPL  278 (514)
Q Consensus       201 ~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~~nptG~~~~l  278 (514)
                                                               .-|.+.+++.+++..  ..++++|++++++|++|.+.|+
T Consensus       240 -----------------------------------------~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l  278 (515)
T 2jis_A          240 -----------------------------------------KMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPL  278 (515)
T ss_dssp             -----------------------------------------CBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred             -----------------------------------------cCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCH
Confidence                                                     014455555554421  2247899999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc-CCC-eEEEecHH--HHHHHHhhcCc
Q psy16848        279 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTKN--FIDTIRSYAAG  354 (514)
Q Consensus       279 ~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~~--~~~~l~~~~~~  354 (514)
                      ++|.++|++||+++|+|++|+.+....+... ....+ ..++|++++|+||+++ +.| |+++.+++  +++........
T Consensus       279 ~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~-~~~~g-~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~  356 (515)
T 2jis_A          279 EAIADVCQRHGLWLHVDAAWGGSVLLSQTHR-HLLDG-IQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQAS  356 (515)
T ss_dssp             HHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGGTT-GGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---
T ss_pred             HHHHHHHHHcCCeEEEehhhhhHHHhChhhH-hhcCC-CccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCch
Confidence            9999999999999999999996554211000 01222 1368999999999986 445 88887765  66543211111


Q ss_pred             eEe----------c---------cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccC-CCcE
Q psy16848        355 FIF----------T---------TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHT-PSHI  413 (514)
Q Consensus       355 ~~~----------~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~  413 (514)
                      +..          .         .......+.++   +..+..++++++.++..++++++.+.|++. ++.+..+ ....
T Consensus       357 yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~---l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~  433 (515)
T 2jis_A          357 YLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLM---WKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN  433 (515)
T ss_dssp             ------CCSCGGGCCGGGCSCSSCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE
T ss_pred             hccCCcccccccCCCCCCCCCCCCcccHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE
Confidence            100          0         01112223333   333335567788999999999999999987 7776643 3445


Q ss_pred             EEEEe-CCC-------cc--------HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHH
Q psy16848        414 IPIKI-GNP-------AL--------NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       414 ~~i~l-~~~-------~~--------~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~  476 (514)
                      +.+++ +..       ..        ...+.+.+. +.|+.+.....  ......++|+++ +..+|++|+++++++|++
T Consensus       434 v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~-~~G~~~~~~~~--~~~~~~~lRis~~~~~~t~edid~~~~~l~~  510 (515)
T 2jis_A          434 VCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMV-KEGSMMIGYQP--HGTRGNFFRVVVANSALTCADMDFLLNELER  510 (515)
T ss_dssp             EEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHH-HHTSCEEEEEE--ETTEEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEEeCccccccccchhHHHHHHHHHHHHHHHHH-hcCCEEEEEEE--ECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            55654 211       11        112566675 77865421110  012246899999 788999999999999998


Q ss_pred             HHHH
Q psy16848        477 VWKS  480 (514)
Q Consensus       477 ~l~~  480 (514)
                      ++++
T Consensus       511 ~~~~  514 (515)
T 2jis_A          511 LGQD  514 (515)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8754

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.87  E-value=6.7e-21  Score=194.80  Aligned_cols=340  Identities=11%  Similarity=0.010  Sum_probs=211.0

Q ss_pred             CCceeeecccCCCCC---C----hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-Cc--EEEEeccc
Q psy16848         16 SNRVTCRLSSVQYKV---P----KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-EA--GLVFTSCY   85 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~--~i~~~sGt   85 (514)
                      ++..-||++=+-|.+   .    |.|++|..+.++. +. ...+....|..++.+.+.+.+-.-... +.  .+.+.+||
T Consensus        42 d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-~~-~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggt  119 (420)
T 4h51_A           42 AKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-NL-DYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGT  119 (420)
T ss_dssp             CCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-TC-CCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHH
T ss_pred             CCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-CC-CCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCch
Confidence            444468886555553   2    4566665555543 22 123445566666655555443211111 12  34456788


Q ss_pred             cccccchhhccc--cCCCceEEecCccchhhhhhhhcCCCCeee-ccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         86 VANDSTLFTLGK--MIPGLHYISDAGNHASMIQGIRNSSAPKII-YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        86 ~a~~~~l~~l~~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      .|+..++..+.+  ..|||.|++++++|......++.+|.+.+. ++..+.+                            
T Consensus       120 ga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~----------------------------  171 (420)
T 4h51_A          120 GAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPK----------------------------  171 (420)
T ss_dssp             HHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGG----------------------------
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccc----------------------------
Confidence            776655544432  459999999999999998888888876442 2221000                            


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                      ..                                             .
T Consensus       172 --------------------------------~~---------------------------------------------~  174 (420)
T 4h51_A          172 --------------------------------TV---------------------------------------------S  174 (420)
T ss_dssp             --------------------------------GT---------------------------------------------E
T ss_pred             --------------------------------cc---------------------------------------------C
Confidence                                            00                                             0


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCC-CCcc-ccCCCc
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG-AGIG-ERDGQL  317 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~-~~~~-~~~~~~  317 (514)
                      .|++.+.+.+++. ++++++++.++||||||..++   +++|.++|+++++++|+|++|.....+... .... ......
T Consensus       175 ~d~~~~~~~l~~~-~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~  253 (420)
T 4h51_A          175 LNFEGMKKDILAA-PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR  253 (420)
T ss_dssp             ECHHHHHHHHHHS-CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             CCHHHHHHHHhcc-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence            1455666666544 566889999999999999999   899999999999999999999843332110 0000 000002


Q ss_pred             cCceEEEcCCcccccCCC---eEEEecHHHHHHHHh-------hcCceEeccCCcHHHHHHHHHHHHH-----hhhchHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRS-------YAAGFIFTTSLPPTVLAGAREAIRI-----LSSQEGV  382 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~a~~~~l~~-----~~~~~~~  382 (514)
                      ....+++.||||.++.+|   ||+++..+..+....       .....  ..+.+...+.++...+..     .....++
T Consensus       254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~--~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~  331 (420)
T 4h51_A          254 GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREE--YTCPPAHGARLAHLILSNNELRKEWEAELS  331 (420)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcc--cCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            245788899999999888   998775443332221       11111  224455555555555542     1134567


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCC----ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        383 ELRAKHQDIVAYLRNELIQIGF----PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       383 ~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      .++++++++++.+.+.|++.|.    .++.++++||.+ ++-   ..+.++.| +++||++.++           -||++
T Consensus       332 ~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~-~gl---s~e~v~~L-~e~~Vy~~~~-----------gRis~  395 (420)
T 4h51_A          332 AMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF-LGL---SKAQCEYC-QNHNIFITVS-----------GRANM  395 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE-CCC---CHHHHHHH-HHTTEECCTT-----------CEEEG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe-cCc---CHHHHHHH-HhCCEEEcCC-----------CEEEe
Confidence            7889999999999999999853    334445555543 221   23455677 5999998632           19999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        459 TPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      + ..++++|++++++|.++++++.
T Consensus       396 A-gl~~~ni~~~a~aI~~vvr~i~  418 (420)
T 4h51_A          396 A-GLTHETALMLAQTINDAVRNVN  418 (420)
T ss_dssp             G-GCCHHHHHHHHHHHHHHHC---
T ss_pred             c-cCCHHHHHHHHHHHHHHHHHhh
Confidence            7 5789999999999999998764

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.87  E-value=1.9e-21  Score=196.59  Aligned_cols=206  Identities=10%  Similarity=0.064  Sum_probs=150.6

Q ss_pred             hhccCCCceEEEEecCCCCCccc-cCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAI-CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~-~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +...+++|++|.+.+..|.+|.+ .|+++|.     +|+++++|.++++|..        +.+..  ..+++++|.+|++
T Consensus       160 ~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~--------pidv~--~~~~~~~s~hK~l  224 (386)
T 3qm2_A          160 EWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSA--------PLDVS--RYGVIYAGAQKNI  224 (386)
T ss_dssp             GCCCCTTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS--------CCCGG--GCSEEEEETTTTT
T ss_pred             HhhcCCCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCC--------CCCcc--ccCEEEEeccccc
Confidence            34455678999999999999996 7888875     8999999999998764        22221  2245668999999


Q ss_pred             cCCC-eEEEecHHHHHHHHhhcC-----------ceEeccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHH
Q psy16848        332 GNIG-GYIVGTKNFIDTIRSYAA-----------GFIFTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       332 g~~G-G~l~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~  398 (514)
                      |+.| |+++.++++++.+.+...           +..+ .+.+.....++.++++++.+. +++++.++.+++.+++.+.
T Consensus       225 GP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~-gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~  303 (386)
T 3qm2_A          225 GPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMF-NTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGV  303 (386)
T ss_dssp             CCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9989 999998877543322111           1111 134555677888888888766 6899999999999999999


Q ss_pred             HHhCCCc-cc-c--CCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848        399 LIQIGFP-VE-H--TPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD  473 (514)
Q Consensus       399 L~~~g~~-~~-~--~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~  473 (514)
                      |+++++- .. .  ..+ .++.+.+++.....++.+.| +++||.+..+..+.     +.+|+++...+|++|||++++.
T Consensus       304 l~~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L-~~~gI~~~~g~~~~-----~~iRiS~~~~~t~edId~l~~~  377 (386)
T 3qm2_A          304 IDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEES-FAAGLHALKGHRVV-----GGMRASIYNAMPIEGVKALTDF  377 (386)
T ss_dssp             HHTCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHH-HHTTEECCBCCTTT-----CSEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHCCCcccCCCHHHcCceEEEEECCCccccHHHHHHH-HHCCCEEeCCCCCc-----CeEEEEcCCCCCHHHHHHHHHH
Confidence            9988651 11 1  123 37788887532236777777 59999988766532     3599999999999999999999


Q ss_pred             HHHHHHH
Q psy16848        474 LLAVWKS  480 (514)
Q Consensus       474 l~~~l~~  480 (514)
                      |+++.++
T Consensus       378 l~~~~~~  384 (386)
T 3qm2_A          378 MIDFERR  384 (386)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.87  E-value=2.3e-21  Score=208.64  Aligned_cols=312  Identities=14%  Similarity=0.112  Sum_probs=209.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccc-cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .....++++++|+++|.+++++++||| .||.+++.+++.  |||.|+++.+.|.++..+++.+|++++.++... +   
T Consensus       194 ~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~--pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~---  267 (715)
T 3n75_A          194 SGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAP--AGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-N---  267 (715)
T ss_dssp             BTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-C---
T ss_pred             cHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCC--CCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-c---
Confidence            455789999999999999999999995 789999988876  999999999999999999999999988765410 0   


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                        .|...+.+.                                                     
T Consensus       268 ------------------~~gi~~~i~-----------------------------------------------------  276 (715)
T 3n75_A          268 ------------------AYGILGGIP-----------------------------------------------------  276 (715)
T ss_dssp             ------------------TTCCBCCCC-----------------------------------------------------
T ss_pred             ------------------ccccccCcc-----------------------------------------------------
Confidence                              000000000                                                     


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc-CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEec
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDE  296 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~De  296 (514)
                                            ...-|.+.+++.+++.. .+.+++++++++ |++|.+.++++|.++|++++  +++||
T Consensus       277 ----------------------~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDE  331 (715)
T 3n75_A          277 ----------------------QSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDS  331 (715)
T ss_dssp             ----------------------GGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEEC
T ss_pred             ----------------------cccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEcc
Confidence                                  00004566666666542 122458888888 99999999999999998664  79999


Q ss_pred             cccccc-cCCCCCCccccCCCccCceEE---EcCCcccccC--CCeEEEecHHHH-HHHHhhcCceEeccCCcHHHHHHH
Q psy16848        297 VHAVGL-YGEHGAGIGERDGQLHNMDII---SGTLGKAFGN--IGGYIVGTKNFI-DTIRSYAAGFIFTTSLPPTVLAGA  369 (514)
Q Consensus       297 a~~~g~-~g~~~~~~~~~~~~~~~~di~---~~S~sK~lg~--~GG~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~a~  369 (514)
                      +|+.+. +++...+...... ...+|++   ++|+||++++  .||++.+++++. +.+... ..+.++++.++..++++
T Consensus       332 AH~~~~~f~~~~~~~~al~~-g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~-~~~~~STSpsy~~~Asl  409 (715)
T 3n75_A          332 AWVPYTNFSPIYEGKCGMSG-GRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEA-YMMHTTTSPHYGIVAST  409 (715)
T ss_dssp             TTCTTGGGSGGGTTSSTTSS-SCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHH-HHHTSCSSCCHHHHHHH
T ss_pred             ccccccccCCcccccccccc-CcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHH-HHhhcCCCchHHHHHHH
Confidence            998543 2322111111111 1124544   8999999976  358887765421 222221 12223567888888998


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C------CccccCC------------------------C------c
Q psy16848        370 REAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G------FPVEHTP------------------------S------H  412 (514)
Q Consensus       370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~~------------------------~------~  412 (514)
                      .++++.+......++++++.++.+++++.|+++ +      +.+..+.                        +      .
T Consensus       410 daA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~  489 (715)
T 3n75_A          410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI  489 (715)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCe
Confidence            889888754345668888999999999888765 1      2221110                        0      0


Q ss_pred             EEEEEeCC----------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        413 IIPIKIGN----------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       413 ~~~i~l~~----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      -+.+..+.          +.....+.+.| +++||.+.-.       +...+-+-++...|++++++++++|.++.+.+.
T Consensus       490 Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L-~~~~I~~E~~-------d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~~  561 (715)
T 3n75_A          490 KVTLLTPGMEKDGTMSDFGIPASIVAKYL-DEHGIVVEKT-------GPYNLLFLFSIGIDKTKALSLLRALTDFKRAFD  561 (715)
T ss_dssp             EEEEECSCBCTTSCBCSSCCCHHHHHHHH-HHTTCCCSEE-------ETTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCCCccccCCCcHHHHHHHH-HHCCCEEEec-------CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            12343332          23455777777 5889997522       345677778888999999999999998876543

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.87  E-value=1.5e-20  Score=197.26  Aligned_cols=310  Identities=12%  Similarity=0.021  Sum_probs=204.5

Q ss_pred             cchHHHHHHHHHHhHcCCCc-----------EEEEeccccccccchhhcccc--C-----CC---------c-eEEecCc
Q psy16848         58 NSLFHEKLEEDVAKLHQKEA-----------GLVFTSCYVANDSTLFTLGKM--I-----PG---------L-HYISDAG  109 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~-----------~i~~~sGt~a~~~~l~~l~~~--~-----~g---------d-~v~~~~~  109 (514)
                      ..++.+++.+++++++|.+.           ++++++||+|+..++.++...  .     .|         + .|+++.+
T Consensus       111 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~  190 (486)
T 1js3_A          111 CTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQ  190 (486)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCC
Confidence            34566677788899988763           578889999998888765321  0     03         2 4888999


Q ss_pred             cchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        110 NHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       110 ~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      .|.++..+++..|.+++.++.++                                                         
T Consensus       191 ~h~s~~~~~~~~G~~v~~v~~d~---------------------------------------------------------  213 (486)
T 1js3_A          191 AHSSVERAGLIGGVKLKAIPSDG---------------------------------------------------------  213 (486)
T ss_dssp             CCHHHHHHHHHHTCEEEEECCCT---------------------------------------------------------
T ss_pred             CcHHHHHHHHhCCCceEEeecCC---------------------------------------------------------
Confidence            99999999988888877665420                                                         


Q ss_pred             ccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccC--CCceEEEEec
Q psy16848        190 LYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV--KIPKLVAFET  267 (514)
Q Consensus       190 ~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~--~~~~~vv~~~  267 (514)
                            .+                                            .-|.+.+++.+.+...  .++.+|++++
T Consensus       214 ------~~--------------------------------------------~~d~~~L~~~i~~~~~~g~~p~~vv~~~  243 (486)
T 1js3_A          214 ------KF--------------------------------------------AMRASALQEALERDKAAGLIPFFVVATL  243 (486)
T ss_dssp             ------TS--------------------------------------------CCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred             ------CC--------------------------------------------CCCHHHHHHHHHHHHhCCCCceEEEEeC
Confidence                  00                                            0144445555543211  1134888999


Q ss_pred             CCCCCccccCHHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecHH-
Q psy16848        268 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTKN-  343 (514)
Q Consensus       268 ~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~~-  343 (514)
                      ++|++|.+.|+++|.++|++||+++++|++|+.+.. .+.....  ..++ .++|.+++|+||+++. .| |+++.+++ 
T Consensus       244 ~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~--~~g~-~~adsi~~~~hK~~~~p~~~G~l~~~~~~  320 (486)
T 1js3_A          244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL--LNGV-EFADSFNFNPHKWLLVNFDCSAMWVKRRT  320 (486)
T ss_dssp             SCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGG--GTTG-GGCSEEEECHHHHSSCCSSCEEEEESCHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHH--hcCc-cccCeeEEchhhhcCCCcceEEEEEeCHH
Confidence            999999999999999999999999999999996543 1111111  1222 3679999999999875 34 88877543 


Q ss_pred             H-HHHHHhhcCceE--------------eccCC-cHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc
Q psy16848        344 F-IDTIRSYAAGFI--------------FTTSL-PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV  406 (514)
Q Consensus       344 ~-~~~l~~~~~~~~--------------~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  406 (514)
                      . .+.+........              ++... ......+..+++..+..++++++.++..++++++.+.|++. ++.+
T Consensus       321 ~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  400 (486)
T 1js3_A          321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEV  400 (486)
T ss_dssp             HHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             HHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            3 333211000000              00000 01122333444544445677888999999999999999987 7776


Q ss_pred             cc-CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEE-ecccCCCCCCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        407 EH-TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYV-QPINYPTVPVGEEKIRLAP-TPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       407 ~~-~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v-~~~~~~~~~~~~~~iRl~~-~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .. +..+++.+.++.. ....++.+.|. ++|+.+ .+..+    .+..++|+++ +..+|++++++++++|+++++++.
T Consensus       401 ~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~  475 (486)
T 1js3_A          401 CAEVTLGLVCFRLKGSDGLNEALLERIN-SARKIHLVPCRL----RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (486)
T ss_dssp             CSCCCSSEEEEEESSCHHHHHHHHHHHH-HHTSCBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCceeEEEEEecChHHHHHHHHHHHH-hcCCEEEEEEEE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            54 5566888877642 23477888886 667543 33322    2357999997 445789999999999999987763

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.86  E-value=6.3e-21  Score=191.08  Aligned_cols=202  Identities=12%  Similarity=0.039  Sum_probs=154.2

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-  335 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-  335 (514)
                      ++++++|.+++..|.+|.+.|.     +++ +|+++++|.++++|..        +.+..  +.|++++|.||++|+.| 
T Consensus       138 ~~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~--------~id~~--~~d~~~~s~~K~~gp~G~  201 (361)
T 3m5u_A          138 SDNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR--------KVDFS--NIALFYGGVQKNAGISGL  201 (361)
T ss_dssp             CTTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS--------CCCCT--TEEEEEEETTTTSSCTTC
T ss_pred             CCCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC--------CCCcc--cCCEEEEechhccCCCcc
Confidence            4578999999988999998772     333 4999999999998764        22221  47899999999999989 


Q ss_pred             eEEEecHHHHHHHHh-hcCce-E---------eccCCcHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        336 GYIVGTKNFIDTIRS-YAAGF-I---------FTTSLPPTVLAGAREAIRILSSQ-EGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       336 G~l~~~~~~~~~l~~-~~~~~-~---------~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      |+++.++++++.+.+ ....+ .         ...+.+.....++.++++++.+. +++++.++.+++.+++.+.|++++
T Consensus       202 g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~  281 (361)
T 3m5u_A          202 SCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSN  281 (361)
T ss_dssp             EEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             EEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999887764 11110 0         01245677788889999988777 799999999999999999999985


Q ss_pred             -C-ccccC---CC-cEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        404 -F-PVEHT---PS-HIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       404 -~-~~~~~---~~-~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                       + ....+   .. .++.+.+++ .....++.+.| +++||.+.+++..     .+.+|+++..++|++|++++++.|++
T Consensus       282 g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L-~~~gI~~~~g~~~-----~g~iRiS~~~~~t~edId~l~~al~~  355 (361)
T 3m5u_A          282 GFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEA-EEAGMIGLKGHRI-----LGGIRASIYNALNLDQVKTLCEFMKE  355 (361)
T ss_dssp             TSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHHH-HHTTEECCBCCTT-----TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeeeccCCHHHcCCeEEEEECCCchhhhHHHHHHH-HHCCCEEecCCCc-----cCeEEEEccCCCCHHHHHHHHHHHHH
Confidence             5 33211   22 377788875 22225677777 5899999876542     24599999999999999999999999


Q ss_pred             HHHH
Q psy16848        477 VWKS  480 (514)
Q Consensus       477 ~l~~  480 (514)
                      +.++
T Consensus       356 ~~~~  359 (361)
T 3m5u_A          356 FQGK  359 (361)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.86  E-value=2.2e-20  Score=192.07  Aligned_cols=254  Identities=15%  Similarity=0.174  Sum_probs=178.1

Q ss_pred             hHHHHHHHHHHhHcCCCcEEE---EeccccccccchhhccccCCCceEEecC-ccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848         60 LFHEKLEEDVAKLHQKEAGLV---FTSCYVANDSTLFTLGKMIPGLHYISDA-GNHASMIQGIRNSSAPKIIYRHNDVNH  135 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~i~---~~sGt~a~~~~l~~l~~~~~gd~v~~~~-~~h~~~~~~~~~~~~~~~~~~~~d~~~  135 (514)
                      ...+++++++++++|.+.+++   ++|||+|+..++.++.+  +||.|+++. +.|.+....++..+..           
T Consensus        65 ~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~--~Gd~Vl~~~~~~y~~~~~~~~l~g~~-----------  131 (431)
T 3ht4_A           65 IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILR--PGDELLYITGKPYDTLEEIVGVRGKG-----------  131 (431)
T ss_dssp             HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCC--TTCEEEECSSSCCTTHHHHTTSSSCS-----------
T ss_pred             hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCC--CCCEEEEeCCCCchhHHHHHhhcccc-----------
Confidence            557899999999999988765   78999999999988876  999999998 8898887665443210           


Q ss_pred             HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848        136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  215 (514)
Q Consensus       136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l  215 (514)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (431)
T 3ht4_A          132 --------------------------------------------------------------------------------  131 (431)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCceeeecchHHHHhhCCCCEEEecC-----CChhHHHHHHhhccCCCceEEEEec-CCCCCccccC---HHHHHHHHH
Q psy16848        216 VNPEVAIHASMIQGIRNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP---LKELCEVSH  286 (514)
Q Consensus       216 ~~~~v~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~vv~~~-~~nptG~~~~---l~~l~~l~~  286 (514)
                                 ...+...|++++.++.     .|++.+++.+    ++++++|++++ ++||+|...+   +++|.++|+
T Consensus       132 -----------~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l----~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~  196 (431)
T 3ht4_A          132 -----------VGSFKEYNIGYNAVPLTEGGLVDFEAVAAAI----HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVK  196 (431)
T ss_dssp             -----------SSCSGGGTCEEEECCBCTTSSBCHHHHHHHC----CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHH
T ss_pred             -----------cchHHHcCCEEEEeCCCCCCCcCHHHHHhhc----CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHH
Confidence                       0111233555666653     2455555544    45789999995 7777776665   899999999


Q ss_pred             H--cCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC----CCeEEEecHHHHHHHHhhcCc--eEec
Q psy16848        287 Q--HGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN----IGGYIVGTKNFIDTIRSYAAG--FIFT  358 (514)
Q Consensus       287 ~--~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~----~GG~l~~~~~~~~~l~~~~~~--~~~~  358 (514)
                      +  +|+++|+|++|+.+..+..      ..  ..+.|++++|++|++|+    .||++++++++++.+......  .+..
T Consensus       197 ~~~~~~~livDea~~~~~~~~~------~~--~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~  268 (431)
T 3ht4_A          197 EIKPDVVVFVDNCYGEFIEEQE------PC--HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAE  268 (431)
T ss_dssp             HHCTTCEEEEECTTCTTSSSCC------GG--GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTS
T ss_pred             hhCCCCEEEEeCCChhhccCCC------cc--ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccc
Confidence            9  9999999999996543211      11  23679999999999754    569999999999988764332  2111


Q ss_pred             cCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-----EEEEEeCCCccHHHHHHHHHH
Q psy16848        359 TSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-----IIPIKIGNPALNTKICDMLLK  433 (514)
Q Consensus       359 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----~~~i~l~~~~~~~~~~~~Ll~  433 (514)
                      .+.+...+.++...++..     +.++++..++++++.+.|+++|+.+.+....     ++.+.+++.....++++.|. 
T Consensus       269 ~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~-  342 (431)
T 3ht4_A          269 AGASLYSLQEMYQGFFLA-----PHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQ-  342 (431)
T ss_dssp             CSCCCSCSHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHH-
T ss_pred             cCccHHHHHHHHhHhhhH-----HHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHH-
Confidence            122112123344444432     3467788889999999999988776443333     78888887666788999985 


Q ss_pred             hC
Q psy16848        434 EK  435 (514)
Q Consensus       434 ~~  435 (514)
                      +.
T Consensus       343 ~~  344 (431)
T 3ht4_A          343 YA  344 (431)
T ss_dssp             HT
T ss_pred             hc
Confidence            54

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.86  E-value=2e-20  Score=204.76  Aligned_cols=314  Identities=14%  Similarity=0.074  Sum_probs=208.0

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccc-cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCY-VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt-~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      .....++++.+++++|.++++++++|+ +++.+++.++..  |||.|+++.+.|.++..++...|++++.++... +   
T Consensus       204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~--~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~-~---  277 (755)
T 2vyc_A          204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR-N---  277 (755)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHHCCEEEEECCCB-C---
T ss_pred             ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHcCCEEEEEeCCC-C---
Confidence            456788999999999999888888886 568999988876  999999999999999999999998887654310 0   


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                        .|...|.+                                                      
T Consensus       278 ------------------~~g~~g~i------------------------------------------------------  285 (755)
T 2vyc_A          278 ------------------RYGIIGPI------------------------------------------------------  285 (755)
T ss_dssp             ------------------TTSCBCCC------------------------------------------------------
T ss_pred             ------------------cccccccc------------------------------------------------------
Confidence                              00000000                                                      


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc------cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCE
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM------DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGAL  291 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~------~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~  291 (514)
                                           ....-|.+.+++.+++.      ...++++++++++ |++|.+.++++|.++|++||++
T Consensus       286 ---------------------~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~  343 (755)
T 2vyc_A          286 ---------------------YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDR  343 (755)
T ss_dssp             ---------------------CGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSE
T ss_pred             ---------------------CcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCE
Confidence                                 00000344444444431      1123458888887 7999999999999999999999


Q ss_pred             EEEeccccccc-cCCCCCCccccCC----CccCceEEEcCCcccccC-C-CeEEEecHH--HH--HHHHhhcCceEeccC
Q psy16848        292 TFVDEVHAVGL-YGEHGAGIGERDG----QLHNMDIISGTLGKAFGN-I-GGYIVGTKN--FI--DTIRSYAAGFIFTTS  360 (514)
Q Consensus       292 li~Dea~~~g~-~g~~~~~~~~~~~----~~~~~di~~~S~sK~lg~-~-GG~l~~~~~--~~--~~l~~~~~~~~~~~~  360 (514)
                      +++|++|+.+. .+...++.....+    .....+++++|+||++++ . ||+++.+++  .+  ..+......+ .+++
T Consensus       344 livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~-~s~s  422 (755)
T 2vyc_A          344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH-ATTS  422 (755)
T ss_dssp             EEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHT-SCSS
T ss_pred             EEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHh-CCCC
Confidence            99999997321 2211101111111    111234599999999975 3 477766543  11  2222211111 1345


Q ss_pred             CcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-C---------CccccC---------------------
Q psy16848        361 LPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-G---------FPVEHT---------------------  409 (514)
Q Consensus       361 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g---------~~~~~~---------------------  409 (514)
                      .+...+++..++++.+..++.++..++..++.+++++.|+++ +         +.+..+                     
T Consensus       423 p~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (755)
T 2vyc_A          423 PLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKL  502 (755)
T ss_dssp             CCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchh
Confidence            677777888888887755445678888888888888888764 3         322111                     


Q ss_pred             -----------------------CC------cEEEEEeCC----------CccHHHHHHHHHHhCCeEEecccCCCCCCC
Q psy16848        410 -----------------------PS------HIIPIKIGN----------PALNTKICDMLLKEKGHYVQPINYPTVPVG  450 (514)
Q Consensus       410 -----------------------~~------~~~~i~l~~----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~  450 (514)
                                             .+      ..+.+..+.          +.....+.+.| +++||.+..       .+
T Consensus       503 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L-~~~gI~~e~-------~~  574 (755)
T 2vyc_A          503 LTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL-GRHGIVPTR-------TT  574 (755)
T ss_dssp             HHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHH-HTTTCCCSE-------EC
T ss_pred             ccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHH-HHCCCEEee-------cC
Confidence                                   11      234555542          23446888888 589998742       23


Q ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        451 EEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       451 ~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ...+|+.++..+|++++++++++|.++.+.+
T Consensus       575 ~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          575 DFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             SSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            5689999999999999999999999988765

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.79  E-value=1.2e-17  Score=166.76  Aligned_cols=333  Identities=16%  Similarity=0.153  Sum_probs=200.9

Q ss_pred             ChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHH----HHHHHHhHcCCCcE-----EEEeccccccccchhhccccCC
Q psy16848         31 PKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEK----LEEDVAKLHQKEAG-----LVFTSCYVANDSTLFTLGKMIP  100 (514)
Q Consensus        31 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~-----i~~~sGt~a~~~~l~~l~~~~~  100 (514)
                      .|.+.+++-..+. +|..++++.+++.|. +..++    ..++..++||.+++     +-..||++||+++..++++  |
T Consensus        67 S~aV~~a~gS~ltnKYaEGyPg~RyYgGc-e~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--P  143 (490)
T 3ou5_A           67 SRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--P  143 (490)
T ss_dssp             CHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred             CHHHHHHhcCcccccccCCCCCccccCCC-hHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--C
Confidence            3555555555444 455666677766664 33333    34677888998874     5568999999999999987  9


Q ss_pred             CceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceE
Q psy16848        101 GLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALT  180 (514)
Q Consensus       101 gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (514)
                      ||+|+.-+..|..-+.--.....                         +-+.++|.|.                      
T Consensus       144 GD~ilg~~l~~GGHltHg~~~~~-------------------------~~v~~sg~~~----------------------  176 (490)
T 3ou5_A          144 HDRIMGLDLPDGGHLTHGYMSDV-------------------------KRISATSIFF----------------------  176 (490)
T ss_dssp             CCCEECBC------------------------------------------------------------------------
T ss_pred             CCEEEecccCCCCcccccccCCC-------------------------cccccccccc----------------------
Confidence            99999888877665421100000                         0000111100                      


Q ss_pred             EeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCChhHHHHHHhh
Q psy16848        181 FVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HNDVNHLTQVLEN  254 (514)
Q Consensus       181 ~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d~~~l~~~l~~  254 (514)
                                                                             +.++++      .-|++.+++..++
T Consensus       177 -------------------------------------------------------~~~~Y~vd~~t~~IDyd~~~~~A~~  201 (490)
T 3ou5_A          177 -------------------------------------------------------ESMPYKLNPKTGLIDYNQLALTARL  201 (490)
T ss_dssp             ----------------------------------------------------------CBCEETTTTEECHHHHHHHHHH
T ss_pred             -------------------------------------------------------cccccccCCCCCcccHHHHHHHHhh
Confidence                                                                   000110      1277778777776


Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cC
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GN  333 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~  333 (514)
                      .   ++|+|+.-.-..|  ..+|+++++++|++.|++|++|.+|-.|.....   ..  ......+|++++|.||++ |+
T Consensus       202 ~---kPklIi~G~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g---~~--psP~~~ADvVTtTTHKTLrGP  271 (490)
T 3ou5_A          202 F---RPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAK---VI--PSPFKHADIVTTTTHKTLRGA  271 (490)
T ss_dssp             H---CCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT---SS--CCGGGTCSEEEEESSSTTCSC
T ss_pred             c---CCCeEEECCccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhccc---cc--CCccccceEEeccccccccCC
Confidence            5   3678776554333  567799999999999999999999997765211   11  111235899999999999 77


Q ss_pred             CCeEEEecH---------------HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q psy16848        334 IGGYIVGTK---------------NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       334 ~GG~l~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      .||++.+++               ++.+.+.....+.. ..+......++...++.....+...+..+++.++++.|.+.
T Consensus       272 rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~-qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~  350 (490)
T 3ou5_A          272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADA  350 (490)
T ss_dssp             SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEeccccccccccccchhHHHHHHHHHhhcCccc-cccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            889998765               45566654433321 11222223333333344333566778889999999999999


Q ss_pred             HHhCCCcccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeC----CCCCHHHHHH
Q psy16848        399 LIQIGFPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPT----PFHTREMIDK  469 (514)
Q Consensus       399 L~~~g~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~----~~~t~e~id~  469 (514)
                      |.+.|+.++.  ...+++.+.+... .+..+..+.| ++.||.+..-..|+.  +...+.||+..+    ..+.++|+++
T Consensus       351 L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~L-e~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~  429 (490)
T 3ou5_A          351 LLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR  429 (490)
T ss_dssp             HHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred             HHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHH-HHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH
Confidence            9999999874  3566777877543 3445555555 799999974333332  223578999775    4678899999


Q ss_pred             HHHHHHHHHHH
Q psy16848        470 FVTDLLAVWKS  480 (514)
Q Consensus       470 ~~~~l~~~l~~  480 (514)
                      +.+.|.+++..
T Consensus       430 IA~~I~~~l~~  440 (490)
T 3ou5_A          430 VVDFIDEGVNI  440 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.71  E-value=3e-16  Score=157.33  Aligned_cols=296  Identities=14%  Similarity=0.103  Sum_probs=187.4

Q ss_pred             CCCc--EEEEecccc-ccccchhhccccC--CCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCC
Q psy16848         74 QKEA--GLVFTSCYV-ANDSTLFTLGKMI--PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP  148 (514)
Q Consensus        74 ~~~~--~i~~~sGt~-a~~~~l~~l~~~~--~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  148 (514)
                      |.+.  ..|..+|++ ++++++.+.++.+  .+|.|+++.+.|.|++.++.++|+.++.++..-                
T Consensus       130 G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~----------------  193 (501)
T 3hl2_A          130 GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL----------------  193 (501)
T ss_dssp             TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE----------------
T ss_pred             CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee----------------
Confidence            7664  366666666 5777776666521  249999999999999999999999988765410                


Q ss_pred             cEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHH
Q psy16848        149 KLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQ  228 (514)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~  228 (514)
                                                        ++.         ..                                
T Consensus       194 ----------------------------------d~~---------~~--------------------------------  198 (501)
T 3hl2_A          194 ----------------------------------EGD---------EL--------------------------------  198 (501)
T ss_dssp             ----------------------------------ETT---------EE--------------------------------
T ss_pred             ----------------------------------ccc---------cc--------------------------------
Confidence                                              000         00                                


Q ss_pred             HHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccc-cCCCC
Q psy16848        229 GIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHG  307 (514)
Q Consensus       229 ~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~  307 (514)
                                   .-|.+.+++.+++...+...+|+.+++.+..+.+.++++|.++|++||+++++|+||+.-+ ...  
T Consensus       199 -------------~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~--  263 (501)
T 3hl2_A          199 -------------RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCM--  263 (501)
T ss_dssp             -------------EECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHH--
T ss_pred             -------------CCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhh--
Confidence                         0156777777776532333444444444544566789999999999999999999998322 100  


Q ss_pred             CCccccCCCccC-ceEEEcCCcccccC-CCe-EEE-ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHH
Q psy16848        308 AGIGERDGQLHN-MDIISGTLGKAFGN-IGG-YIV-GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVE  383 (514)
Q Consensus       308 ~~~~~~~~~~~~-~di~~~S~sK~lg~-~GG-~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  383 (514)
                       .++ ......+ +|+++.|.||.+-. .|| ++. .++++++.+.....+     +.+....+....++..+..+++.+
T Consensus       264 -~lp-~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yPG-----r~S~Spsldl~~tLL~lGr~Gy~~  336 (501)
T 3hl2_A          264 -HLI-QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPG-----RASASPSLDVLITLLSLGSNGYKK  336 (501)
T ss_dssp             -HHH-HHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSCS-----CBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhH-HHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhCCC-----CCCCcHHHHHHHHHHHHHHHHHHH
Confidence             000 0111224 99999999998743 344 443 356777777544322     112222233333444444667788


Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCccccCC-Cc-EEEEEeCC-----CccHHHHHHHHHHhCCeE---Eec-cc-----
Q psy16848        384 LRAKHQDIVAYLRNELIQI----GFPVEHTP-SH-IIPIKIGN-----PALNTKICDMLLKEKGHY---VQP-IN-----  443 (514)
Q Consensus       384 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~-~~~i~l~~-----~~~~~~~~~~Ll~~~GI~---v~~-~~-----  443 (514)
                      +.++..++.+++.+.|+++    |-++...+ .+ -+.+.+..     ......+...|+ .++|.   |.+ +.     
T Consensus       337 ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf-~r~vsG~Rvv~~~~~~~i~  415 (501)
T 3hl2_A          337 LLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLF-TRQVSGARVVPLGSMQTVS  415 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHH-HTTCCSCEEECTTCCEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHH-hcCCCcceeecCCCceEEC
Confidence            9999999999999999885    54554443 33 33455542     123567788887 66543   321 11     


Q ss_pred             -----CCCCC---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        444 -----YPTVP---VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       444 -----~~~~~---~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                           .+...   .-..++-++....++++|+|.++++|++++.++.+
T Consensus       416 g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~  463 (501)
T 3hl2_A          416 GYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK  463 (501)
T ss_dssp             TEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                 11110   11368889999999999999999999999988754

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.69  E-value=5e-15  Score=150.58  Aligned_cols=309  Identities=13%  Similarity=0.097  Sum_probs=183.5

Q ss_pred             hHHHHHHHHHHhHcCCCcE--EEEecc-ccccccchhhccc--cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChH
Q psy16848         60 LFHEKLEEDVAKLHQKEAG--LVFTSC-YVANDSTLFTLGK--MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVN  134 (514)
Q Consensus        60 ~~~~~~~~~la~~~~~~~~--i~~~sG-t~a~~~~l~~l~~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~  134 (514)
                      .+.+.+..++.+++|.+..  .++++| |.++++++.+.++  ..+++.|+++...|.|+..++.++|..++.++..-  
T Consensus        98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~--  175 (450)
T 3bc8_A           98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL--  175 (450)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE--
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeee--
Confidence            4566788888888887753  445544 4354444444443  11389999999999999999999999887654410  


Q ss_pred             HHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhh
Q psy16848        135 HLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  214 (514)
Q Consensus       135 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~  214 (514)
                                        .                             ++                              
T Consensus       176 ------------------~-----------------------------~~------------------------------  178 (450)
T 3bc8_A          176 ------------------E-----------------------------GD------------------------------  178 (450)
T ss_dssp             ------------------E-----------------------------TT------------------------------
T ss_pred             ------------------c-----------------------------Cc------------------------------
Confidence                              0                             00                              


Q ss_pred             ccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEE
Q psy16848        215 LVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  294 (514)
Q Consensus       215 l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~  294 (514)
                                               -..-|.+.+++.+++...+++.+|+.++..+.+|.+.|+++|.++|++||+++++
T Consensus       179 -------------------------~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~V  233 (450)
T 3bc8_A          179 -------------------------ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV  233 (450)
T ss_dssp             -------------------------EEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred             -------------------------cCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEE
Confidence                                     0011566667777664322344455555555567889999999999999999999


Q ss_pred             eccccccccCCCCCCccccCCCc-cCceEEEcCCcccccC-CC-eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHH
Q psy16848        295 DEVHAVGLYGEHGAGIGERDGQL-HNMDIISGTLGKAFGN-IG-GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAR  370 (514)
Q Consensus       295 Dea~~~g~~g~~~~~~~~~~~~~-~~~di~~~S~sK~lg~-~G-G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~  370 (514)
                      |+||+....  ....++ ..... ..+|+++.|.||++.. .| +++.. +++.++.+.....+.  . +.++ .+....
T Consensus       234 D~A~G~~~~--~~~~l~-~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~--~-s~Sp-sL~l~~  306 (450)
T 3bc8_A          234 NNAYGLQSS--KCMHLI-QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR--A-SASP-SLDVLI  306 (450)
T ss_dssp             ECTTTTTCH--HHHHHH-HHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC--B-CSHH-HHHHHH
T ss_pred             ECCCchhhh--hhHhHH-HHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcC--C-cccH-HHHHHH
Confidence            999983211  000010 01111 2689999999999865 34 55554 666776665432211  1 2232 222222


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC----CCccccCCC-c-EEEEEeCC-----CccHHHHHHHHHHhCC---
Q psy16848        371 EAIRILSSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTPS-H-IIPIKIGN-----PALNTKICDMLLKEKG---  436 (514)
Q Consensus       371 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~-~-~~~i~l~~-----~~~~~~~~~~Ll~~~G---  436 (514)
                      ..+.. ..+.+.+..++..++.+++.+.+++.    ++.+..... + -..+.+..     ..+...+.-.+. ..|   
T Consensus       307 ~l~~~-G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~-~~g~sG  384 (450)
T 3bc8_A          307 TLLSL-GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLF-TRQVSG  384 (450)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHH-HTTCCS
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEec-CCCCcc
Confidence            22222 34455566666677777888777654    555543221 1 11232321     234556666664 444   


Q ss_pred             eEEe--------------cccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        437 HYVQ--------------PINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       437 I~v~--------------~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ..+.              .........+...+-+.++..++++|+++++++|+++.++.
T Consensus       385 ~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~  443 (450)
T 3bc8_A          385 ARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV  443 (450)
T ss_dssp             CEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            3332              00000111235678888888999999999999999987665

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=94.39  E-value=0.19  Score=49.88  Aligned_cols=97  Identities=12%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             CCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEe
Q psy16848         74 QKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAF  153 (514)
Q Consensus        74 ~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~  153 (514)
                      +.+..+++..+.++.......+..             +..........+..+..++++|+++|++.+.    .+.+.+++
T Consensus       123 ~~~~vi~~~~~yhg~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~  185 (395)
T 3nx3_A          123 KGGQFIAFKHSFHGRTLGALSLTA-------------NEKYQKPFKPLISGVKFAKYNDISSVEKLVN----EKTCAIIL  185 (395)
T ss_dssp             TTCEEEEETTCCCCSSHHHHTTCC-------------CHHHHGGGCSCCSCEEEECTTCHHHHHTTCC----TTEEEEEE
T ss_pred             CCCEEEEEcCCcCCCCHHHHhhcC-------------CcccccccCCCCCCcEEeCCCCHHHHHHhcc----CCeEEEEE
Confidence            355666666666665433323221             1122223334455677778889999988774    45678889


Q ss_pred             eccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        154 ETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       154 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      +..++.+|...|    +.++.++++++|..+.+|+.|.
T Consensus       186 ~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~  223 (395)
T 3nx3_A          186 ESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC  223 (395)
T ss_dssp             ESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            999989999988    8999999999999999999876

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=93.04  E-value=0.6  Score=47.75  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=47.6

Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|++.+.+....+.+.++++.++..+|.+.|    +.++.++|+++|+.+.+|+.|.
T Consensus       207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~  265 (476)
T 3i5t_A          207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT  265 (476)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            678898888655456789999999999998777    8899999999999999999886

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=93.01  E-value=0.68  Score=47.03  Aligned_cols=98  Identities=21%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             HHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCC
Q psy16848         69 VAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIP  148 (514)
Q Consensus        69 la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  148 (514)
                      ...+.|.++.+.+..+.++......+...  +.                  ........++.+|.+.+++.+.+.... .
T Consensus       163 Ar~~tgr~~ii~~~~~yHG~t~~~~~~~~--~~------------------~~~~~~~~~p~nd~~~l~~~l~~~~~~-i  221 (454)
T 4ao9_A          163 ALHFTGRRKIVVFSGGYHGGVLGFGARPS--PT------------------TVPFDFLVLPYNDAQTARAQIERHGPE-I  221 (454)
T ss_dssp             HHHHHTCCEEEEETTCBCSTTCBBSSSBC--TT------------------SCCSEEEEECTTCHHHHHHHHHHTGGG-E
T ss_pred             HHhcccCCeEEEEeCCcCCcccccccccc--Cc------------------cCCCCcccCCCchHHHHHHHHhhcCCc-e
Confidence            33445788888888888874333222211  11                  112234556788999999999886543 4


Q ss_pred             cEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        149 KLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       149 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      ..|+++.+....|.+.|    ++.++++|+++|+.+.+|+.+.
T Consensus       222 AavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t  264 (454)
T 4ao9_A          222 AVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT  264 (454)
T ss_dssp             EEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG
T ss_pred             EEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc
Confidence            56778889888898888    8889999999999999999886

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=92.76  E-value=0.74  Score=47.02  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|++.+.+....+.+.++++.++..+|.+.|    +.+++++++++|+.+.+|+.+.
T Consensus       209 ~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~  267 (472)
T 3hmu_A          209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC  267 (472)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            678888887655556789999999999999998    8999999999999999999886

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=92.67  E-value=0.81  Score=46.44  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=47.9

Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|++.+.+....+++.++++.+..++|.+.|    +.++.++++++|..+.+|+.+.
T Consensus       205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~  263 (459)
T 4a6r_A          205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC  263 (459)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            688888887655456788999999999999888    8999999999999999999886

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=92.54  E-value=0.88  Score=46.16  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=47.3

Q ss_pred             hHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|++.+.+....+.+.++++.....+|.+.+    +.++.++++++|+.+.+|+.+.
T Consensus       207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~  265 (460)
T 3gju_A          207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT  265 (460)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            588888887655456788999999988898777    8889999999999999999887

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=92.09  E-value=0.64  Score=46.28  Aligned_cols=56  Identities=21%  Similarity=0.372  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |+++|++.+.+    +++++++......+|.+.|+.++.++++++|..+.+|+.|+.|..
T Consensus       152 d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~  207 (423)
T 3lvm_A          152 DLKELEAAMRD----DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL  207 (423)
T ss_dssp             CHHHHHHHCCT----TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             CHHHHHHhcCC----CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCC
Confidence            78888887753    568888888777789999999999999999999999999876543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=91.70  E-value=0.72  Score=45.62  Aligned_cols=62  Identities=26%  Similarity=0.314  Sum_probs=50.4

Q ss_pred             CCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC----CccchhHHhhhhhhcCceEEeecccc
Q psy16848        122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG----AICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       122 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      ...+..++.+|+++|++.+.    .++++++++.++++.|    +..+..++.++++++|..+.+|+.|+
T Consensus       162 ~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~  227 (406)
T 4adb_A          162 PADIRHAAYNDINSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT  227 (406)
T ss_dssp             CSSEEEECTTCHHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCCceEeCCCcHHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            45566677778888887764    4578888887777777    66789999999999999999999986

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=91.38  E-value=0.68  Score=46.78  Aligned_cols=56  Identities=25%  Similarity=0.304  Sum_probs=47.2

Q ss_pred             CChHHHHHHHHhcccCCCcEEEeeccc-cccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        131 NDVNHLTQVLENMDVKIPKLVAFETVH-SMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      +|.++|++.|.+. ..+.+.|+++.++ ..+|...|    +.++.++++++|..+.+|+.|.
T Consensus       195 ~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~  255 (448)
T 3dod_A          195 QCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT  255 (448)
T ss_dssp             HHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence            4688999998743 2346788999999 88898887    8999999999999999999986

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=90.70  E-value=0.18  Score=50.02  Aligned_cols=55  Identities=25%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |+++|++.+.    .+++++++......+|.+.+..++.++++++|..+.+|+.|+.|.
T Consensus       148 d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~  202 (400)
T 3vax_A          148 SVEGVMERLR----PDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK  202 (400)
T ss_dssp             CHHHHHTTCC----TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTT
T ss_pred             CHHHHHHhcC----CCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCC
Confidence            6777776664    356888888877788999999999999999999999999987654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=90.58  E-value=0.22  Score=48.70  Aligned_cols=54  Identities=30%  Similarity=0.427  Sum_probs=46.0

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |+++|++.+.    .+++++++......+|.+.|..++.++++++|. +.+|+.|+.|.
T Consensus       127 d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~  180 (382)
T 4hvk_A          127 DVSFIDQKLR----DDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQ  180 (382)
T ss_dssp             CHHHHHHHCC----TTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTT
T ss_pred             CHHHHHHHhc----cCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCC
Confidence            7888887774    356788888888788999999999999999999 99999887654

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=90.51  E-value=1.5  Score=44.13  Aligned_cols=54  Identities=24%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             hHHHHHHHHhcccCCCcEEEeecc-ccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMDVKIPKLVAFETV-HSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .++|++.+.+....+.+.++++.. +. +|...|    +.++.++++++|..+.+|+.|.
T Consensus       201 ~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~  259 (452)
T 3n5m_A          201 VKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVIC  259 (452)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchh
Confidence            889999997444455678999998 68 998887    8889999999999999999886

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=90.38  E-value=0.42  Score=47.10  Aligned_cols=57  Identities=23%  Similarity=0.353  Sum_probs=48.6

Q ss_pred             CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      .|++++++.+.+.  .++++|++......+|.+.|..++.++++++|..+.+|+.|+.|
T Consensus       120 ~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g  176 (392)
T 2z9v_A          120 IDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFG  176 (392)
T ss_dssp             CCHHHHHHHHHHC--TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred             CCHHHHHHHHhcC--CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccC
Confidence            3889999998752  35778888877777899999999999999999999999998754

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=89.55  E-value=0.32  Score=47.64  Aligned_cols=54  Identities=20%  Similarity=0.458  Sum_probs=45.6

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcC--ceEEeecccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVG  189 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g  189 (514)
                      |+++|++.+..    +++++++......+|.+.|..++.++++++|  ..+.+|+.|+.|
T Consensus       128 d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~  183 (384)
T 1eg5_A          128 KLEELEKLVDE----DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG  183 (384)
T ss_dssp             CHHHHHHHCCT----TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred             CHHHHHHHhCC----CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcC
Confidence            78888887753    5678888776667899999999999999999  999999998754

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=88.92  E-value=0.42  Score=47.21  Aligned_cols=54  Identities=31%  Similarity=0.527  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      |+++|++.+..    ++++|+++.....+|.+.|..++.++++++|..+.+|+.|+.|
T Consensus       153 d~~~l~~~l~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g  206 (406)
T 1kmj_A          153 QLETLPTLFDE----KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVM  206 (406)
T ss_dssp             CGGGHHHHCCT----TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             CHHHHHHHhcc----CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcC
Confidence            78888887742    5688888888778899999999999999999999999998865

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=87.33  E-value=1.7  Score=44.01  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=45.4

Q ss_pred             CChHHHHHHHHhcccCCCcEEEeec-cccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        131 NDVNHLTQVLENMDVKIPKLVAFET-VHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       131 ~d~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      +|.++|++.|.+.. .+.+.++++. ....+|.+.|    +.++.++++++|+.+.+|+.+.
T Consensus       218 ~d~~~le~~l~~~~-~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~  278 (457)
T 3tfu_A          218 AYSAAFEAQLAQHA-GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT  278 (457)
T ss_dssp             HHHHHHHHHHHHHG-GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHHHHHHHHHHhCC-CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc
Confidence            47889999997643 3567888888 6667787776    8899999999999999999864

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=87.04  E-value=0.54  Score=46.70  Aligned_cols=55  Identities=27%  Similarity=0.502  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |+++|++.+..    ++++|++......+|.+.|..++.++++++|..+.+|+.|+.|.
T Consensus       158 d~~~l~~~l~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~  212 (420)
T 1t3i_A          158 DLEHFKTLLSE----KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH  212 (420)
T ss_dssp             CHHHHHHHCCT----TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CHHHHHHhhCC----CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCC
Confidence            78888887743    56788887776678999999999999999999999999988653

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=86.91  E-value=0.55  Score=45.95  Aligned_cols=53  Identities=32%  Similarity=0.489  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVG  189 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  189 (514)
                      |+++|++.+..    ++++|++......+|.+.|..++.++++++|.. .+|+.|+.|
T Consensus       127 d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g  179 (382)
T 4eb5_A          127 DVSFIDQKLRD----DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVG  179 (382)
T ss_dssp             CHHHHHHHCCT----TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBT
T ss_pred             CHHHHHHHhcC----CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcC
Confidence            78888887753    467888887777889999999999999999999 999998854

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=86.62  E-value=0.46  Score=47.99  Aligned_cols=69  Identities=12%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             hcCCCCeeeccC-----CChHHHHHHHHhcccCCCcEEEeec----cccccCCccchhHHhhhhhh--cCceEEeecccc
Q psy16848        119 RNSSAPKIIYRH-----NDVNHLTQVLENMDVKIPKLVAFET----VHSMTGAICPLKELCEVSHQ--HGALTFVDEVHA  187 (514)
Q Consensus       119 ~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  187 (514)
                      +..|.+++.++.     .|++++++.+.    .++++|+++.    .....++..+..++.+++++  +|+.+.+|++++
T Consensus       136 ~~~G~~~~~v~~~~~~~~d~e~l~~~l~----~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~  211 (431)
T 3ht4_A          136 KEYNIGYNAVPLTEGGLVDFEAVAAAIH----SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYG  211 (431)
T ss_dssp             GGGTCEEEECCBCTTSSBCHHHHHHHCC----TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred             HHcCCEEEEeCCCCCCCcCHHHHHhhcC----CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCCh
Confidence            445666666665     38888888775    3578888887    56678999999999999999  999999999988


Q ss_pred             cccc
Q psy16848        188 VGLY  191 (514)
Q Consensus       188 ~g~~  191 (514)
                      .+..
T Consensus       212 ~~~~  215 (431)
T 3ht4_A          212 EFIE  215 (431)
T ss_dssp             TTSS
T ss_pred             hhcc
Confidence            7764

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=86.24  E-value=0.68  Score=45.82  Aligned_cols=51  Identities=59%  Similarity=1.121  Sum_probs=45.0

Q ss_pred             CCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        147 IPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      ++++|++++....+|.+.|..++.++++++|+.+.+|++|+.|..|+.|.|
T Consensus       178 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~  228 (401)
T 2bwn_A          178 APKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAG  228 (401)
T ss_dssp             SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCC
T ss_pred             CceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCce
Confidence            357888888888889999999999999999999999999999988766655

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=84.63  E-value=4.9  Score=40.42  Aligned_cols=55  Identities=20%  Similarity=0.292  Sum_probs=43.3

Q ss_pred             hHHHHHHHHhcc-cCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        133 VNHLTQVLENMD-VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       133 ~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .+.+++.+.+.. ......++++.+..+.|.+.|    +.++.++++++|..+.+|+.+.
T Consensus       212 ~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~  271 (451)
T 3oks_A          212 AKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT  271 (451)
T ss_dssp             HHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            344445555432 245678899999998898888    8999999999999999999886

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=84.54  E-value=0.25  Score=49.72  Aligned_cols=50  Identities=50%  Similarity=0.895  Sum_probs=44.2

Q ss_pred             CcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCc
Q psy16848        148 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAG  197 (514)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  197 (514)
                      +++|++++.+..+|.+.|+.++.++++++|+.+.+|+.|+.|..+..+.+
T Consensus       195 ~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~  244 (427)
T 2w8t_A          195 AKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG  244 (427)
T ss_dssp             CEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC
T ss_pred             CeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence            36788889998999999999999999999999999999999888765554

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=82.28  E-value=1.1  Score=45.13  Aligned_cols=57  Identities=11%  Similarity=0.052  Sum_probs=46.1

Q ss_pred             CChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848        131 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       131 ~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      .|++.|++.|.+.....+.+|+..-.|..++.+++..++.++++++|..+.||.+|.
T Consensus       182 id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G  238 (450)
T 3bc8_A          182 TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYG  238 (450)
T ss_dssp             CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred             cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCc
Confidence            389999999998764445555555555556789999999999999999999998765

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=82.13  E-value=1.9  Score=41.61  Aligned_cols=46  Identities=7%  Similarity=-0.059  Sum_probs=33.9

Q ss_pred             ceeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecC
Q psy16848        197 GIGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       197 g~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~  242 (514)
                      .++..+|+++++..++..+.++  +++++.    .+...+...|++++.++.
T Consensus        70 ~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~  121 (354)
T 3ly1_A           70 SILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKM  121 (354)
T ss_dssp             GEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECC
T ss_pred             HEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecC
Confidence            4566778999999999999887  566654    445666777877776663

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=82.01  E-value=1.1  Score=44.86  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      |.++|++.+.+....+.++++++.+...+|...|    +.++.++++++|..+.+|+.|+
T Consensus       188 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~  247 (433)
T 1zod_A          188 ELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT  247 (433)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence            4788888887653345678888888777898777    8899999999999999999987

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=81.59  E-value=1.3  Score=44.78  Aligned_cols=56  Identities=11%  Similarity=0.053  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                      |++.+++.|.++.......|.....|..++.+.+..++.++++++|..++||++|.
T Consensus       201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhG  256 (501)
T 3hl2_A          201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYG  256 (501)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTC
T ss_pred             CHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcch
Confidence            89999999999853433444444334445678999999999999999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	514
d1fc4a_	401	c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E	3e-57
d1fc4a_	401	c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E	4e-29
d2bwna1	396	c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho	1e-51
d2bwna1	396	c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho	2e-24
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	2e-46
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	9e-24
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	2e-16
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	3e-15
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	1e-07
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	5e-15
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	2e-06
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	3e-13
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	3e-10
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	5e-13
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	2e-11
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	8e-11
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	9e-11
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	1e-07
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	9e-09
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	6e-08
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	2e-04
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	2e-06
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	3e-04
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-05
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	2e-05
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	2e-05
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	6e-05
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	6e-05
d1t3ia_	408	c.67.1.3 (A:) Probable cysteine desulfurase SufS {	8e-05
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	1e-04
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	1e-04
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	3e-04
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	0.001
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	0.002

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

 Score =  193 bits (491), Expect = 3e-57
 Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 6/264 (2%)

Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN--MDVKIPKLVAFETVHSMTGAICPLKE 280
           HAS+I G+R   A +  Y +ND+  L   L+          L+A + V SM G I  LK 
Sbjct: 139 HASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKG 198

Query: 281 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNIGGYIV 339
           +C+++ ++ AL  VD+ HAVG  GE+G G  E    +  +DII+GTLGKA  G  GGY  
Sbjct: 199 VCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTA 258

Query: 340 GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL 399
             K  ++ +R  +  ++F+ SL P ++A + + + +   + G ELR +        R ++
Sbjct: 259 ARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM--VEAGSELRDRLWANARQFREQM 316

Query: 400 IQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT 459
              GF +      IIP+ +G+  +  K    L  ++G YV    YP VP G+ +IR   +
Sbjct: 317 SAAGFTLAGADHAIIPVMLGDAVVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMS 375

Query: 460 PFHTREMIDKFVTDLLAVWKSLDL 483
             HT E I + V     + K L +
Sbjct: 376 AAHTPEQITRAVEAFTRIGKQLGV 399

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

 Score =  116 bits (291), Expect = 4e-29
 Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 4/192 (2%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
             ++  G G    R I G    H++LE+ +A     E  ++++SC+ AN     TL    
Sbjct: 70  AGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAE 129

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN--MDVKIPKLVAFETVH 157
                ISDA NHAS+I G+R   A +  Y +ND+  L   L+          L+A + V 
Sbjct: 130 D--AIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVF 187

Query: 158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN 217
           SM G I  LK +C+++ ++ AL  VD+ HAVG  GE+G G  E    +  +DII+GTL  
Sbjct: 188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGK 247

Query: 218 PEVAIHASMIQG 229
                       
Sbjct: 248 ALGGASGGYTAA 259

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

 Score =  178 bits (452), Expect = 1e-51
 Identities = 126/271 (46%), Positives = 179/271 (66%)

Query: 208 MDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFET 267
             +  G ++  +   HASMI+GI+ ++ PK I+RHNDV HL +++   D   PKL+AFE+
Sbjct: 126 RVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFES 185

Query: 268 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 327
           V+SM G   P+KE+C+++ + GALT++DEVHAVG+YG  GAG+ ERDG +H +DI +GTL
Sbjct: 186 VYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTL 245

Query: 328 GKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK 387
            KA+G  GGYI  +   +D +RSYA GFIF+TSLPP + AGA+ +I  L + EG +LR  
Sbjct: 246 AKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDA 305

Query: 388 HQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV 447
            Q     L+  L  +G P+    SHI+P+ IG+P     + DMLL + G YVQPIN+PTV
Sbjct: 306 QQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTV 365

Query: 448 PVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
           P G E++R  P+P H  + ID  V  +  +W
Sbjct: 366 PRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

 Score =  103 bits (256), Expect = 2e-24
 Identities = 100/176 (56%), Positives = 134/176 (76%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           EALE  G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+TL TL  + 
Sbjct: 70  EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 129

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
           PGL   SD+ NHASMI+GI+ ++ PK I+RHNDV HL +++   D   PKL+AFE+V+SM
Sbjct: 130 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 189

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL 215
            G   P+KE+C+++ + GALT++DEVHAVG+YG  GAG+ ERDG +H +DI +GTL
Sbjct: 190 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTL 245

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score =  163 bits (414), Expect = 2e-46
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 4/250 (1%)

Query: 222 IHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL 281
            HAS+++    S +    + HNDV HL ++L +      ++V  E V SM G   PL E+
Sbjct: 131 SHASLLEAASLSPSQLRRFAHNDVTHLARLLASPC-PGQQMVVTEGVFSMDGDSAPLAEI 189

Query: 282 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGT 341
            +V+ QH     VD+ H  G+ GE G G           +++  T GK FG  G  ++ +
Sbjct: 190 QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGFGVSGAAVLCS 247

Query: 342 KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ 401
               D +  +A   I++TS+PP      R ++ ++ S EG   R K   ++   R  +  
Sbjct: 248 STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD 307

Query: 402 IGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF 461
           + F +  + S I P+ +G+ +   ++ + L  ++G +V  I  PTVP G  ++RL  T  
Sbjct: 308 LPFTLADSCSAIQPLIVGDNSRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAA 366

Query: 462 HTREMIDKFV 471
           H  + ID+ +
Sbjct: 367 HEMQDIDRLL 376

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (250), Expect = 9e-24
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 3/172 (1%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMI 99
           +  E+FG G+GG+ ++SG S+ H+ LEE++A+       L+F S + AN + +  +    
Sbjct: 63  QGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMA-- 120

Query: 100 PGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM 159
                 +D  +HAS+++    S +    + HNDV HL ++L +      ++V  E V SM
Sbjct: 121 KEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPC-PGQQMVVTEGVFSM 179

Query: 160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII 211
            G   PL E+ +V+ QH     VD+ H  G+ GE G G          + ++
Sbjct: 180 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVV 231

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 78.4 bits (192), Expect = 2e-16
 Identities = 42/282 (14%), Positives = 96/282 (34%), Gaps = 27/282 (9%)

Query: 215 LVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 274
              PE+  H S+ +  +      +  ++ + + + ++L  +D     ++   T+      
Sbjct: 95  HYLPELPGHPSIERSCKI-----VNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIE 149

Query: 275 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI 334
           +   K++   +    A+ FVD+     +          + G      +++ T     G  
Sbjct: 150 LENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADL---VVTSTDKLMEGPR 206

Query: 335 GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY 394
           GG + G K  +D I        F     P +LAG   A++  + +   +   + ++    
Sbjct: 207 GGLLAGKKELVDKIYIEG--TKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLS 264

Query: 395 LRNELIQIG-------------FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQP 441
              +L +                P       +      N     +I   LLK  G  +  
Sbjct: 265 KIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYG--IIT 322

Query: 442 INYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL 483
           I    +P   + +R+  T      + D ++    A+ +S+ +
Sbjct: 323 ITVAGMPGASKSLRIDLTSRDAERIDDNYIIK--AIVESIKM 362

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 75.3 bits (184), Expect = 3e-15
 Identities = 36/358 (10%), Positives = 98/358 (27%), Gaps = 22/358 (6%)

Query: 129 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAV 188
             +   H      N+    PK      ++++T  I  L+   +    +           +
Sbjct: 84  LSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKI--LESFFKQLGLNVHAIATPISTGM 141

Query: 189 GLYGEHGAGIGERDGQLHNMDIISGTLVNPEV--AIHASMIQGIRNSSAPKIIYRHNDVN 246
            +       +     +  +  +I     +     A+    +      +       +  V 
Sbjct: 142 SIS----LCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVE 197

Query: 247 HLTQVL-ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGE 305
            +   + + +++     V              + E+ ++   +     ++  +A+     
Sbjct: 198 DIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY 257

Query: 306 HGAGIGERDGQLHNMDIISGTLGKAFG-NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPT 364
                  +    + +D +  +  K     IGG +V + +         +     ++ P  
Sbjct: 258 LE---KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVV 314

Query: 365 VLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALN 424
               +  ++   +  E V+ +   + ++  L N+L +            I   I   +  
Sbjct: 315 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDP 374

Query: 425 TKICDMLLKEKGHYVQPINYPTVPVG--------EEKIRLAPTPFHTREMIDKFVTDL 474
            +I    L             T   G         + I +        E I   V+ L
Sbjct: 375 VEIAAK-LYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKL 431

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 22/208 (10%), Positives = 51/208 (24%), Gaps = 15/208 (7%)

Query: 56  SGNSLFHEKLEEDVAKL--HQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHAS 113
           S       K+ E   K       A     S  ++    L    K       I    +H S
Sbjct: 109 SIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS 168

Query: 114 MIQGIRNSSAPKIIYR--------HNDVNHLTQVL-ENMDVKIPKLVAFETVHSMTGAIC 164
            I+ +        +          +  V  +   + + +++     V             
Sbjct: 169 PIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD 228

Query: 165 PLKELCEVSHQHGALTFVDEVHAVGLY----GEHGAGIGERDGQLHNMDIISGTLVNPEV 220
            + E+ ++   +     ++  +A+           A     D  + + D    T +   +
Sbjct: 229 DIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGL 288

Query: 221 AIHASMIQGIRNSSAPKIIYRHNDVNHL 248
                       S +         V + 
Sbjct: 289 VYSTDAEFIKEISLSYPGRASATPVVNT 316

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 75.0 bits (183), Expect = 5e-15
 Identities = 36/300 (12%), Positives = 81/300 (27%), Gaps = 37/300 (12%)

Query: 220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP-- 277
             +    I+   ++        + D+  L + +E +       +      +  G      
Sbjct: 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSL 203

Query: 278 --LKELCEVSHQHGALTFVDEVHAVGL--------YGEHGAGIGERDGQL-HNMDIISGT 326
             LK +  ++ ++     +D                      I +   +     D+++ +
Sbjct: 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263

Query: 327 LGKAFGNIGGYIVGTKN-----FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEG 381
             K      G ++  K+          R+         +               L     
Sbjct: 264 AKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN 323

Query: 382 VELRAKHQDIVAYLRNELIQIGFPVEHTPSH--------IIPIKIGNPALNTKICDMLLK 433
           ++  A     V YL + L +IG   +    H        ++P    +      +   L K
Sbjct: 324 LDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYK 383

Query: 434 EKG----------HYVQPINYPTVPVGEEKIRLA-PTPFHTREMIDKFVTDLLAVWKSLD 482
             G              P     +P   E +RL  P   +T+  +D  +     V ++  
Sbjct: 384 VAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 19/208 (9%), Positives = 51/208 (24%), Gaps = 36/208 (17%)

Query: 43  EKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKM---- 98
                   G    SG+  ++  L E V  +   +  +       A    +  L K     
Sbjct: 58  SMQAAMMRGDEAFSGSRSYY-ALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116

Query: 99  --IPGLHYI----------------SDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL 140
             +     +                +        I+   ++        + D+  L + +
Sbjct: 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176

Query: 141 ENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGL------ 190
           E +       +      +  G        LK +  ++ ++     +D             
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ 236

Query: 191 --YGEHGAGIGERDGQL-HNMDIISGTL 215
                    I +   +     D+++ + 
Sbjct: 237 REAEYKDWTIEQITRETYKYADMLAMSA 264

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 36/248 (14%), Positives = 81/248 (32%), Gaps = 18/248 (7%)

Query: 240 YRHNDVNHLTQVLENMDVKIPK--LVAFETVHSMTGAIC----PLKELCEVSHQHGALTF 293
               D + + + +   ++  P+  L+A E  H+ +G        +KE+C ++ +HG    
Sbjct: 107 NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVH 166

Query: 294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAA 353
           +D           G  + E  G   ++             +G  +VG ++FI+  R    
Sbjct: 167 IDGARIFNASIASGVPVKEYAGYADSVMFC--LSKGLCAPVGSVVVGDRDFIERARKARK 224

Query: 354 GFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHI 413
                      + A    A+                     L+ + I      E   +++
Sbjct: 225 MLGGGMRQAGVLAAAGIIALTK---MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNM 281

Query: 414 IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD 473
           + ++  N  +N       L+  G     ++          IRL      +R  I++ +  
Sbjct: 282 VILRTDNLKVNAHGFIEALRNSGVLANAVSDTE-------IRLVTHKDVSRNDIEEALNI 334

Query: 474 LLAVWKSL 481
              +++  
Sbjct: 335 FEKLFRKF 342

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 11/163 (6%)

Query: 57  GNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQ 116
           G      +LE   A+   KEA L   S  + N  ++    +    +   +D+      + 
Sbjct: 31  GEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG 90

Query: 117 GIRNSSAPKII-----YRHNDVNHLTQVLENMDVKIPK--LVAFETVHSMTGAIC----P 165
            +   S              D + + + +   ++  P+  L+A E  H+ +G        
Sbjct: 91  AMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLEN 150

Query: 166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM 208
           +KE+C ++ +HG    +D           G  + E  G   ++
Sbjct: 151 IKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSV 193

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 68.3 bits (165), Expect = 5e-13
 Identities = 32/278 (11%), Positives = 71/278 (25%), Gaps = 17/278 (6%)

Query: 40  EALEKFGTGAGGTRNISGNSL-------FHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL 92
           +AL ++G G       +   L        H+ +   + K    +   V      A  + +
Sbjct: 20  QALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVM 79

Query: 93  FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV------- 145
            +L K       + D   H S       +     +    D        EN          
Sbjct: 80  HSLAK--KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKK 137

Query: 146 -KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQ 204
                L          G +  +K++ +V  ++     V+  +A+G        IG     
Sbjct: 138 RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIV 197

Query: 205 LHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 264
                 ++ +     + +     + +   S          +    +    + +       
Sbjct: 198 GSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV 257

Query: 265 FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL 302
            E +      +   +       + G     D  H   L
Sbjct: 258 RERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDL 295

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 22/227 (9%), Positives = 67/227 (29%), Gaps = 13/227 (5%)

Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
             L          G +  +K++ +V  ++     V+  +A+G        IG        
Sbjct: 141 VVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSG 200

Query: 320 MDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS- 378
              ++ +         G +   + + + +   +  +           A     I +++S 
Sbjct: 201 HKSMAASGP------IGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASF 254

Query: 379 ---QEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEK 435
              +E ++   +  +       E+ ++G        H   +   +  +  +I       +
Sbjct: 255 PHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGR 314

Query: 436 G---HYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479
                 ++      +  G  +     T   + E +D  +     + +
Sbjct: 315 FFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 361

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.5 bits (148), Expect = 8e-11
 Identities = 30/292 (10%), Positives = 82/292 (28%), Gaps = 35/292 (11%)

Query: 223 HASMIQGIRNSSAPKIIYR--------HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA 274
             S  + +  +    ++            D+  +   ++ +  +    +   T       
Sbjct: 150 QKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRV 209

Query: 275 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG-N 333
              L+EL  +   +     V+  + +         + ++  ++  +D    +L K F   
Sbjct: 210 PDRLEELAVICANYDIPHVVNNAYGLQSSK--CMHLIQQGARVGRIDAFVQSLDKNFMVP 267

Query: 334 IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH-QDIV 392
           +GG I+   N               ++ P   +     ++     ++ ++ R +    + 
Sbjct: 268 VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLS 327

Query: 393 AYLRNELIQIGFPVEHTPSH-------IIPIKIGNPALNTKICDMLLKEK---------- 435
             L+         +  TP +       +  I   +    T++  ML   +          
Sbjct: 328 TQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLG 387

Query: 436 ------GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
                 GH  +             +  A       + +D F+  L      +
Sbjct: 388 NVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 439

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 61.0 bits (146), Expect = 9e-11
 Identities = 21/258 (8%), Positives = 55/258 (21%), Gaps = 18/258 (6%)

Query: 223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA------FETVHSMTGAIC 276
                                D+  L +        +             T       + 
Sbjct: 96  APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD 155

Query: 277 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGG 336
            ++ + +V         +D           G    E   +     +  G           
Sbjct: 156 EIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEA 215

Query: 337 YIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR 396
            ++   +    +          +S    + A     +                  +A   
Sbjct: 216 IVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGL 275

Query: 397 NELIQIGFPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRL 456
             L  +   +  T ++I+  ++ +  +        L + G             G   +R 
Sbjct: 276 EGLGGVEV-LGGTEANILFCRLDSAMI------DALLKAGFGF-----YHDRWGPNVVRF 323

Query: 457 APTPFHTREMIDKFVTDL 474
             +   T E +D  +  +
Sbjct: 324 VTSFATTAEDVDHLLNQV 341

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 17/188 (9%), Positives = 42/188 (22%), Gaps = 13/188 (6%)

Query: 40  EALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFT-SCYVANDSTLFTLGK- 97
           E  +     + G     G      +++    ++ +++  +    +   AN   L  +   
Sbjct: 18  EVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPP 77

Query: 98  -----MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVA 152
                  P  H  +D                        D+  L +        +     
Sbjct: 78  WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQP 137

Query: 153 ------FETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 206
                   T       +  ++ + +V         +D           G    E   +  
Sbjct: 138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAG 197

Query: 207 NMDIISGT 214
              +  G 
Sbjct: 198 VDALSFGA 205

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 55.2 bits (132), Expect = 9e-09
 Identities = 40/227 (17%), Positives = 68/227 (29%), Gaps = 19/227 (8%)

Query: 263 VAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
              E +    G I P    L+ + ++  ++  L   DEV   GL               +
Sbjct: 190 FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHH----Y 244

Query: 319 NMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS 378
           N+      LGKA       I       D +     G   +T     + A        +  
Sbjct: 245 NVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI 304

Query: 379 QEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH---IIPIKIGNPALNTKICDMLLKEK 435
            E +   A+          +       +         +  I+  N  +N     + LKE 
Sbjct: 305 NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKEN 364

Query: 436 GHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
           G            V ++ IRL P    T+E +D+    ++   K  D
Sbjct: 365 GLIT-------RDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 52.6 bits (125), Expect = 6e-08
 Identities = 40/277 (14%), Positives = 78/277 (28%), Gaps = 36/277 (12%)

Query: 242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEV 297
             D+  L + +          +      +  G        LKE+ E++ QHG    +D  
Sbjct: 165 DFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 224

Query: 298 HAVGLY--------GEHGAGIGERDGQL-HNMDIISGTLGKAFGNIGGYIVGTKNFIDTI 348
                             A I E    +    D ++ +  K      G +V  ++  +  
Sbjct: 225 RFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIF 284

Query: 349 RSYAAGFI--FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQ-DIVAYLRNELIQIGFP 405
                  +          +      A+     +   E    ++   V YL + L + G P
Sbjct: 285 TLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIP 344

Query: 406 -VEHTPSH--------IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG------ 450
               T  H        ++P   G+      + + L  E G     I    +         
Sbjct: 345 IQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQ 404

Query: 451 ----EEKIRLA-PTPFHTREMIDKFVTDLLAVWKSLD 482
                E +RL      +T + +D     L+ + +   
Sbjct: 405 KHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 25/194 (12%), Positives = 47/194 (24%), Gaps = 28/194 (14%)

Query: 57  GNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKM-----------IPGLHYI 105
             S  +  L++   +L   +  +       A +     L K                 + 
Sbjct: 72  AGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHF 131

Query: 106 SDAGNHASMIQGIRNSS---------APKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV 156
                H  +      +                   D+  L + +          +     
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 191

Query: 157 HSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS 212
            +  G        LKE+ E++ QHG    +D              I  RD +  N  I  
Sbjct: 192 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA----YFIKARDPKYKNATIKE 247

Query: 213 GTLVNPEVAIHASM 226
                 + A   +M
Sbjct: 248 VIFDMYKYADALTM 261

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 30/244 (12%)

Query: 260 PKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHN 319
             LV+   V++  G +  +  + E+    G +  VD   +VG            D     
Sbjct: 144 TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL--------PIDLSQLK 195

Query: 320 MDIISGTLGKAFGNIG-GYIVGTKNFIDTIRSYAAGFI----FTTSLPPTVLAGAREAIR 374
           +D++S +  K +G  G G +   +     I +   G        +   P           
Sbjct: 196 VDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY 255

Query: 375 ILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKIC-DMLLK 433
            ++ +E      + + +   L N +  I     +         I N + N      +++ 
Sbjct: 256 RIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMA 315

Query: 434 EKG-------HYVQPINYP---------TVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV 477
            K                P            +    IR +   F T E ID  +  +   
Sbjct: 316 LKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKS 375

Query: 478 WKSL 481
              L
Sbjct: 376 IGRL 379

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 63  EKLEEDVAKL-HQKEAGLVFTSCYVANDSTLFTLGKMI---PGLHYISDAGNHASMIQGI 118
           +     +A L       +VFTS    +D+             G H I+    H +++   
Sbjct: 51  DIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTC 110

Query: 119 RNSSAPKIIYRHNDVNHLTQV-LENMDVKI---PKLVAFETVHSMTGAICPLKELCEVSH 174
           R          +        + L+ ++  +     LV+   V++  G +  +  + E+  
Sbjct: 111 RQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCR 170

Query: 175 QHGALTFVDEVHAVG 189
             G +  VD   +VG
Sbjct: 171 ARGIIYHVDATQSVG 185

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 23/240 (9%), Positives = 54/240 (22%), Gaps = 10/240 (4%)

Query: 236 PKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD 295
                               +  +   + + +  +  G     +EL ++S          
Sbjct: 107 CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYL 166

Query: 296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGF 355
            +    L     + + +              +G                     +     
Sbjct: 167 FLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLI 226

Query: 356 IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP-SHII 414
               +L         +   ++      EL A    + A L+  L   G  +     S+ +
Sbjct: 227 KQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQL 286

Query: 415 PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDL 474
              + N  +        L              +  G   +RL  +     +   +FV  L
Sbjct: 287 FPILENTMIAE------LNNDFDM---YTVEPLKDGTCIMRLCTSWATEEKECHRFVEVL 337

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 44/285 (15%), Positives = 76/285 (26%), Gaps = 30/285 (10%)

Query: 224 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI------CP 277
            +    +     P  +          +++E  D +    V      + TG          
Sbjct: 167 FARYWDVELREIP--MRPGQLFMDPKRMIEACD-ENTIGVVPTFGVTYTGNYEFPQPLHD 223

Query: 278 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG---NI 334
             +  +          +D      L       I   D +L  +  IS +  K        
Sbjct: 224 ALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI-VWDFRLPRVKSISASGHKFGLAPLGC 282

Query: 335 GGYIVGTKNFIDTIRS----YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD 390
           G  I   +  +         Y  G I T ++  +  AG   A      + G E   K Q+
Sbjct: 283 GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQN 342

Query: 391 IVAYLRN------------ELIQIGFPVEHTPSHIIPIKIG-NPALNTKICDMLLKEKGH 437
               +              E I  G P E  P+    +K G +P          L+ +G 
Sbjct: 343 ASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGW 402

Query: 438 YVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD 482
            V              +R+        +  +  + D  A  K L 
Sbjct: 403 QVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 447

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 35/257 (13%)

Query: 252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIG 311
           L  +  +  +L+A   V ++ G   PL E+  ++HQHGA   VD   AV  +        
Sbjct: 156 LPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-------- 207

Query: 312 ERDGQLHNMDIISGTLGKAFGNIG--------------------GYIVGTKNFIDTIRSY 351
             D Q  + D    +  K +G  G                    G ++ T +  +     
Sbjct: 208 PVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWT 267

Query: 352 AAGFIFTTSLPPTVLA-GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTP 410
            A + F    P T    G   A+  +S+     +    Q+++ Y  ++L  +     + P
Sbjct: 268 KAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGP 327

Query: 411 SHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEK-----IRLAPTPFHTR 464
            + + +   N    +       L   G  V+  ++  +P+          R +   ++T 
Sbjct: 328 QNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH 387

Query: 465 EMIDKFVTDLLAVWKSL 481
           E +D+ VT L  + + L
Sbjct: 388 EEVDRLVTGLQRIHRLL 404

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 44/256 (17%), Positives = 78/256 (30%), Gaps = 21/256 (8%)

Query: 203 GQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD 256
           G    +  +   +++P  EV + +    S  + +R +    +              E + 
Sbjct: 99  GGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVR 158

Query: 257 VKI---PKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGI 310
             I    K +   + ++ TGA+ P   L+ L  ++ +H      DE++   LY       
Sbjct: 159 RAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP 218

Query: 311 GERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLA 367
           G          +      KAF   G   GY  G K  I  + S +     +         
Sbjct: 219 GR---VAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWAT 275

Query: 368 GAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH--IIPIKIGNPALNT 425
                 +  S       R  ++     L   L  +G      PS    + +     A + 
Sbjct: 276 LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKA-VRPSGAFYVLMDTSPIAPDE 334

Query: 426 KICDMLLKEKGHYVQP 441
                 L E G  V P
Sbjct: 335 VRAAERLLEAGVAVVP 350

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 33/241 (13%), Positives = 67/241 (27%), Gaps = 42/241 (17%)

Query: 263 VAFETVHSMTGAIC----PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH 318
           +  E V    G        ++ L  +  +HG +   DEV   G          E+     
Sbjct: 202 IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ-SGAGRTGTLFAMEQ----M 256

Query: 319 NMDIISGTLGKAFGN---IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI 375
            +     T  K+      + G   G    +D +     G  +  +  P     A E +++
Sbjct: 257 GVAPDLTTFAKSIAGGFPLAGVT-GRAEVMDAVAPGGLGGTYAGN--PIACVAALEVLKV 313

Query: 376 LSSQ--------------EGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNP 421
              +              +G+   A+    +  +R     I   +     H  P    + 
Sbjct: 314 FEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKP----DA 369

Query: 422 ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL 481
            L  +I      +KG  +              +R+          I + +     + +  
Sbjct: 370 KLTAEIVARAR-DKGLILLS-----CGPYYNVLRILVPLTIEDAQIRQGLE---IISQCF 420

Query: 482 D 482
           D
Sbjct: 421 D 421

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score = 42.6 bits (99), Expect = 8e-05
 Identities = 44/293 (15%), Positives = 93/293 (31%), Gaps = 22/293 (7%)

Query: 209 DIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETV 268
           D I  T++     +    +   +  +  K +      +   +  + +  +  KLV    +
Sbjct: 113 DEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHI 172

Query: 269 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHG-----------AGIGERDGQL 317
            +  G + P +E+ +++HQ GA   VD   +   Y                        +
Sbjct: 173 SNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGI 232

Query: 318 HNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTV-LAGAREAIRIL 376
             +      L       GG  +  + F D   +      F    P          A+  L
Sbjct: 233 GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL 292

Query: 377 SSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIKIGNPALNTKICD-----ML 431
           +      +     ++  YL   L QI     + P+     +    + N           +
Sbjct: 293 TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATM 352

Query: 432 LKEKGHYVQPINYPTVPVGEEK-----IRLAPTPFHTREMIDKFVTDLLAVWK 479
           + + G  ++  ++ T P+          R +   ++T+E ID F+  L A  +
Sbjct: 353 VDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR 405

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 50/248 (20%), Positives = 86/248 (34%), Gaps = 37/248 (14%)

Query: 238 IIYRHNDVNHLTQVLENMDVKIPKLVAF--ETVHSMTGAICP----LKELCEVSHQHGAL 291
            I  +ND+  L + L++     P + AF  E +    G + P    L  + E+  +H  L
Sbjct: 170 DIIPYNDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVL 224

Query: 292 TFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN---IGGYIVGTKNFIDTI 348
              DE+   GL         + +      DI+   LGKA          ++   + + TI
Sbjct: 225 FIADEIQ-TGLARTGRWLAVDYENVRP--DIV--LLGKALSGGLYPVSAVLCDDDIMLTI 279

Query: 349 RSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH 408
           +       +  +  P     A  A+ +L  +    L      +   LRNEL+++   V  
Sbjct: 280 KPGEHFSTYGGN--PLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVT 334

Query: 409 TPSHI-----IPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT 463
                     I IK        K+C  L  + G           P   + IR AP     
Sbjct: 335 AVRGKGLLNAIVIKETKDWDAWKVCLRLR-DNGLLA-------KPTHGDIIRFAPPLVIK 386

Query: 464 REMIDKFV 471
            + + + +
Sbjct: 387 EDELRESI 394

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 62  HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS 121
              LE  +A L   EAGL   S   A  STL+T   + PG   +     +      + + 
Sbjct: 61  LNLLEARMASLEGGEAGLALASGMGAITSTLWT--LLRPGDEVLLGNTLYGCTFAFLHHG 118

Query: 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF 181
                +   +      Q LE       +++ FE+  +    +  +  + +++ +HGA   
Sbjct: 119 IGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVV 178

Query: 182 VDEVHAVGLYG---EHGAGI 198
           VD  +         E GA +
Sbjct: 179 VDNTYCTPYLQRPLELGADL 198

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 62  HEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNS 121
            + LE  +AKL + +    FTS  +A  S +  L K   G   ++    +    + +   
Sbjct: 51  RDALESLLAKLDKADRAFCFTS-GMAALSAVTHLIK--NGEEIVAGDDVYGGSDRLLSQV 107

Query: 122 SAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF 181
                +            +        KLV  E+  +    I  ++++ E++H  GAL  
Sbjct: 108 VPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVL 167

Query: 182 VDEVHAVGLYG---EHGAGI 198
           VD      +     E GA I
Sbjct: 168 VDNSIMSPVLSRPLELGADI 187

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 14/237 (5%)

Query: 252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGA 308
           L+       + +   +  + TGA+     L+E+ +   +H  +   DEV+   +Y +   
Sbjct: 152 LKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH 211

Query: 309 GIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTV 365
                   +    I      K F   G   G++      I+ +  +              
Sbjct: 212 YSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQY 271

Query: 366 LAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH--IIPIKIGNPAL 423
              A +A++   S + VE   K  D    L  + +         P     I  +I +  L
Sbjct: 272 --AAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGL 329

Query: 424 NTK-ICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK 479
            +K   +++LKE    V P +      GE  +R++       E +++ +  +  V K
Sbjct: 330 TSKKFSELMLKEARVAVVPGSAFGKA-GEGYVRISYA--TAYEKLEEAMDRMERVLK 383

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 37/303 (12%)

Query: 201 RDGQLHNMDIISGTLVNPEVAIHA--SMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVK 258
            +G  H    +        VA     S     + ++A  +   +ND+  +  +      +
Sbjct: 140 FEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGE 199

Query: 259 IPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERD 314
           I  ++  E +   +G I P    L+ L E++ +H AL   DEV         G    E+ 
Sbjct: 200 IAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQ--EKF 256

Query: 315 GQLHNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTT-SLPPTVLAGAREAI 373
           G   ++  +   +G   G   G   G +  +  +      +   T S  P  +    + +
Sbjct: 257 GVTPDLTTLGKIIGG--GLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTL 314

Query: 374 RILSSQEGVE-------LRAKHQDIVAYLRNELIQIG--------FPVEHTPSHIIPIKI 418
            +L      E         +     +A         G        F  E    +    K 
Sbjct: 315 ELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKK 374

Query: 419 GNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW 478
            +    ++    +L E+G Y+ P  +              +  HT E ID  +     V 
Sbjct: 375 SDLQKFSRFHRGML-EQGIYLAPSQF---------EAGFTSLAHTEEDIDATLAAARTVM 424

Query: 479 KSL 481
            +L
Sbjct: 425 SAL 427

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.97
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.97
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.97
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.97
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.96
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.96
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.96
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.96
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.96
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.96
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.96
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.96
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.96
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.96
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.96
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.96
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.95
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.95
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.95
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.95
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.95
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.95
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.95
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.95
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.95
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.94
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.94
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.94
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.93
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.93
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.92
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.91
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.91
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.9
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.9
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.89
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.89
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.88
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.88
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.88
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.87
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.87
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.87
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.87
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.87
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.86
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.85
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.85
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.85
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.85
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.85
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.85
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.84
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.84
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.84
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.83
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.83
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.83
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.83
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.83
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.83
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.82
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.82
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.81
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.81
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.81
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.81
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.8
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.8
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.79
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.77
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.77
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.76
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.75
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.74
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.72
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.63
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.62
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.56
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.55
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.3
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	97.37
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	97.31
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	92.08
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	90.52
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	90.49
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	84.41
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	83.84

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=100.00  E-value=7.7e-49  Score=394.06  Aligned_cols=350  Identities=48%  Similarity=0.822  Sum_probs=315.8

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      .++.++||+|++||+   ||+++++..+++++||.++++++...|+.+.++++|+++++++|.+.+++++||+.||..++
T Consensus        43 ~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i  122 (396)
T d2bwna1          43 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL  122 (396)
T ss_dssp             CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHH
Confidence            457899999999997   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++...+++|.|+.|...|.++++++++.++++..|+|+|+++|++.+......++++|++||+|+|+|           
T Consensus       123 ~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdG-----------  191 (396)
T d2bwna1         123 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDG-----------  191 (396)
T ss_dssp             HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTC-----------
T ss_pred             HHHhcccCCCceeehhhhhhccchhhhccccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCcc-----------
Confidence            988544599999999999999999999999999999999999999988877766666766777766555           


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (396)
T d2bwna1         192 --------------------------------------------------------------------------------  191 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                                           .+.|+++|.++|++||+++++||+|++|.+|+.|+++....+.....|++++||+|++|
T Consensus       192 ---------------------d~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g  250 (396)
T d2bwna1         192 ---------------------DFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG  250 (396)
T ss_dssp             ---------------------CBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred             ---------------------cccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccc
Confidence                                 44568888888888999999999999998888888887766666678999999999999


Q ss_pred             CCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc
Q psy16848        333 NIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH  412 (514)
Q Consensus       333 ~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  412 (514)
                      ..||++.+++++++.++.....+.|++++|+..++++.++++.+..+..++.+.+++.+.+++.+.|.+.|+++..+.++
T Consensus       251 ~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~sp  330 (396)
T d2bwna1         251 VFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH  330 (396)
T ss_dssp             SCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS
T ss_pred             ccccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCC
Confidence            98999999999999999988888889999999999999999988766667778888999999999999999988888889


Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        413 IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       413 ~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      ++++.+++.....+++++|++++||++.+..+|+.|.+...+|++++..+|++|||+++++|+++
T Consensus       331 Ivpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         331 IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            99999988777888998877678999999999999999999999999999999999999999986

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-45  Score=369.33  Aligned_cols=352  Identities=27%  Similarity=0.427  Sum_probs=318.7

Q ss_pred             cchhhhhcCCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEecc
Q psy16848          8 LNFKQVHKSNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSC   84 (514)
Q Consensus         8 ~~~~~~~~~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sG   84 (514)
                      .+-..++.+|++++||+|++||+   ||++++++.+++++||.++++++...|..+.++++|+++++++|.+.+++++||
T Consensus        28 ~~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG  107 (383)
T d1bs0a_          28 GAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISG  107 (383)
T ss_dssp             CSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCH
T ss_pred             CCCCeEEECCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCceEEeccc
Confidence            34445566889999999999997   999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCcc
Q psy16848         85 YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAIC  164 (514)
Q Consensus        85 t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
                      ++||+.++.++..  ++|.|+++...|.+++.+++..+++++.|+|+|+++|++.+.+...                   
T Consensus       108 ~~an~~~i~al~~--~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~~le~~l~~~~~-------------------  166 (383)
T d1bs0a_         108 FAANQAVIAAMMA--KEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCP-------------------  166 (383)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCS-------------------
T ss_pred             chhhHHHHHhhcC--CCceEEeeccccHHHhhccccCCCcceEecchHHHHHHHHhcccCC-------------------
Confidence            9999999999987  9999999999999999999999999999999999999988865431                   


Q ss_pred             chhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCC
Q psy16848        165 PLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHND  244 (514)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d  244 (514)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (383)
T d1bs0a_         167 --------------------------------------------------------------------------------  166 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                                    +.++|+++.+++++|.+.|+++|.++|++||+++++||+|++|.+|..+.+..+..+.  ..++++
T Consensus       167 --------------~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~--~~~~~~  230 (383)
T d1bs0a_         167 --------------GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV--KPELLV  230 (383)
T ss_dssp             --------------SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC--CCSEEE
T ss_pred             --------------CceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC--cccccc
Confidence                          2467888899999999999999999999999999999999999999988887777665  677888


Q ss_pred             cCCcccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        325 GTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       325 ~S~sK~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      .|++|++|..||++.++.+.++.++.....+.++++.++..++++.++++.+.....+..+.++.++..++.+.|.+.|+
T Consensus       231 ~t~~ka~g~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~  310 (383)
T d1bs0a_         231 VTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF  310 (383)
T ss_dssp             EESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             ccccccccccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            89999999989999999999999998888887888899999999999998887666778889999999999999999999


Q ss_pred             ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        405 PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       405 ~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .+..+.++++++.+++...+.++.+.|+ ++||++.+..+|..+.+...+|++++..+|+||||+++++|..+
T Consensus       311 ~~~~~~s~Ii~v~~g~~~~a~~~~~~L~-~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         311 TLADSCSAIQPLIVGDNSRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             EECSCCSSBCCEEEESHHHHHHHHHHHH-HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEEECCHHHHHHHHHHHH-HCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            8877888888888877667788999996 99999999999999999999999999999999999999998764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-44  Score=364.71  Aligned_cols=353  Identities=30%  Similarity=0.483  Sum_probs=317.4

Q ss_pred             CCceeeecccCCCCC---ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccch
Q psy16848         16 SNRVTCRLSSVQYKV---PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTL   92 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l   92 (514)
                      +|++++||+|++||+   ||++++++.+++++||.++++++...|..+.++++|+.+++++|.+.+++++||++|++.++
T Consensus        43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i  122 (401)
T d1fc4a_          43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLF  122 (401)
T ss_dssp             TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred             CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHH
Confidence            789999999999996   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++.+  ++|.|+++...|.+++.++...++++..++++|++++++.+.+....                          
T Consensus       123 ~~l~~--~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d~~~le~~~~~~~~~--------------------------  174 (401)
T d1fc4a_         123 ETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREA--------------------------  174 (401)
T ss_dssp             HHHCC--TTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHT--------------------------
T ss_pred             HHhcC--CCcEEEeCCcchHHHHccccccCceEEEEcCCChHHHHHHHHHhhhc--------------------------
Confidence            99977  99999999999999999999999999999999999998877654321                          


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  252 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  252 (514)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (401)
T d1fc4a_         175 --------------------------------------------------------------------------------  174 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFG  332 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg  332 (514)
                          .++.++++++++.++.|.+.|+++|.++|++||+++|+||+|++|.+|..|.+..+..+...++|++++|++|++|
T Consensus       175 ----~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g  250 (401)
T d1fc4a_         175 ----GARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG  250 (401)
T ss_dssp             ----TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC
T ss_pred             ----ccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc
Confidence                1224567777777888888899999999999999999999999999999888887777766689999999999995


Q ss_pred             C-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Q psy16848        333 N-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPS  411 (514)
Q Consensus       333 ~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  411 (514)
                      + .||++.++.++++.++.....+.++.+.++...+++..+++....  .++.+++++++.+++++.+.+.++.+..+.+
T Consensus       251 g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~~  328 (401)
T d1fc4a_         251 GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAGADH  328 (401)
T ss_dssp             SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCCSSS
T ss_pred             cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccccc--CHHHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            4 579999999999999888777777888999999999999987643  3578999999999999999999988877888


Q ss_pred             cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        412 HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       412 ~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      +++++.+++.....++.++|+ ++||++.+..+|..+.+...+|++++..+|+||||+++++|+++.++++.
T Consensus       329 pIv~v~~~~~~~a~~~~~~L~-~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg~  399 (401)
T d1fc4a_         329 AIIPVMLGDAVVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV  399 (401)
T ss_dssp             SEEEEEEECHHHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             CEEEEEECCHHHHHHHHHHHH-HCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            999888888777778999996 99999999999999999999999999999999999999999999999864

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=8.2e-32  Score=272.32  Aligned_cols=350  Identities=16%  Similarity=0.204  Sum_probs=254.4

Q ss_pred             hhhhhcCCceeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecc
Q psy16848         10 FKQVHKSNRVTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSC   84 (514)
Q Consensus        10 ~~~~~~~g~~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sG   84 (514)
                      -+..+.+|..+||++.+  ++..+|.+++++.++++. +  ..++....|..++.+.+.+++.+..|.   ++.+++|+|
T Consensus        22 a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~-~--~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G   98 (388)
T d1j32a_          22 AKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQ-G--KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNG   98 (388)
T ss_dssp             HHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHT-T--CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred             HHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhc-C--CCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCC
Confidence            44555688899999644  343468899999998875 2  122333456677777777777776653   233555554


Q ss_pred             -ccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         85 -YVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        85 -t~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                       ++++..++.+++.  |||.|+++.+.|......++..+..++.++...                               
T Consensus        99 ~~~al~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~-------------------------------  145 (388)
T d1j32a_          99 GKQSIFNLMLAMIE--PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTV-------------------------------  145 (388)
T ss_dssp             HHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCG-------------------------------
T ss_pred             HHHHHHHHHHHHhC--CCCEEEEcCCCcHHHHHHHHHhcCeEEEEeccc-------------------------------
Confidence             6778888888876  999999999999988877777777666544310                               


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                                                                    .+
T Consensus       146 ------------------------------------------------------------------------------~~  147 (388)
T d1j32a_         146 ------------------------------------------------------------------------------ET  147 (388)
T ss_dssp             ------------------------------------------------------------------------------GG
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          01


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccC
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHN  319 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~  319 (514)
                      ++..+.+.+++...++++++++++||||||.+++   +++|.++|+++|+++|+||+|.....+ ....++........+
T Consensus       148 ~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~  227 (388)
T d1j32a_         148 QFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYE  227 (388)
T ss_dssp             TTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHH
T ss_pred             ccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCccccc
Confidence            1222223333334567899999999999999999   789999999999999999999844432 222222211111124


Q ss_pred             ceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                      ..+++.||||.++.+|   ||+++++++++.+.......  ....+...+.++...+... .+++.+.++.++++++.+.
T Consensus       228 ~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~  304 (388)
T d1j32a_         228 RSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS--TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYML  304 (388)
T ss_dssp             TEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhc--cccccHHHHHHHhhcccch-HHHHHHHHHHHHHHHHHHH
Confidence            6899999999999778   99999999998877655433  3356677777777766643 4577889999999999999


Q ss_pred             HHHHhC-CCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q psy16848        397 NELIQI-GFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTD  473 (514)
Q Consensus       397 ~~L~~~-g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~  473 (514)
                      +.|++. |+.+..+.++ ++++.++. ..+..+++++|++++||.+.||..+.   .++++|++++  .+++++++++++
T Consensus       305 ~~l~~~~g~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~---~~~~~Rls~~--~~~e~l~~al~r  379 (388)
T d1j32a_         305 DALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG---ADDCIRLSYA--TDLDTIKRGMER  379 (388)
T ss_dssp             HHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT---CTTBEEEECC--SCHHHHHHHHHH
T ss_pred             HHHHhCCCCEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccC---CCCeEEEEEe--CCHHHHHHHHHH
Confidence            999988 7887777765 55666653 34567888888878899999999764   3579999997  588999999999


Q ss_pred             HHHHHHHc
Q psy16848        474 LLAVWKSL  481 (514)
Q Consensus       474 l~~~l~~~  481 (514)
                      |+++++.+
T Consensus       380 l~~~l~~l  387 (388)
T d1j32a_         380 LEKFLHGI  387 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998864

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5.6e-31  Score=266.27  Aligned_cols=347  Identities=18%  Similarity=0.181  Sum_probs=248.5

Q ss_pred             CceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccccc
Q psy16848         17 NRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVAND   89 (514)
Q Consensus        17 g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~   89 (514)
                      ++.+||++.++  +-.++.+++++.++++...+   ++....|..++.+++.+++.+..+.     +..++++++++++.
T Consensus        24 ~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~---~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~  100 (388)
T d1gdea_          24 MKDVISLGIGEPDFDTPQHIKEYAKEALDKGLT---HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL  100 (388)
T ss_dssp             CTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred             CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCcc---CCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHH
Confidence            45689996443  33467899999998886222   2233345666666666666654432     23444445556677


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.+++.  |||.|+++.++|......++..|++++.++....+                                   
T Consensus       101 ~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~-----------------------------------  143 (388)
T d1gdea_         101 MGLSAFLK--DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEED-----------------------------------  143 (388)
T ss_dssp             HHHTTTCC--TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGG-----------------------------------
T ss_pred             HHHHHhcC--CCCEEEECCCCcHHHHHHHHHcCCEEEEeeccccc-----------------------------------
Confidence            78878876  99999999999999888888888777665432100                                   


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                               +.+                                             -|.+.++
T Consensus       144 -------------------------~~~---------------------------------------------~d~~~l~  153 (388)
T d1gdea_         144 -------------------------EFR---------------------------------------------LNVDELK  153 (388)
T ss_dssp             -------------------------TTC---------------------------------------------CCHHHHH
T ss_pred             -------------------------CCC---------------------------------------------CCHHHHH
Confidence                                     000                                             1333333


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~di~~~  325 (514)
                          +..+++++++++++||||||.+++   +++|.++|++|++++|+||+|...... ....++..... ..+.+++++
T Consensus       154 ----~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~  228 (388)
T d1gdea_         154 ----KYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG-MFERTITVN  228 (388)
T ss_dssp             ----HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT-CGGGEEEEE
T ss_pred             ----HhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccC-CCCeEEEEe
Confidence                334566899999999999999999   788999999999999999999954433 33323333322 236789999


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      ||||.+|.+|   ||+++++++++.+.......  ....+...+.++..+++.. ....+.+.++.+.++.+.+.+.|.+
T Consensus       229 S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  306 (388)
T d1gdea_         229 GFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN--ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE  306 (388)
T ss_dssp             ESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhccCccccEEEEEeeccchhhhhhccccc--cccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh
Confidence            9999999768   99999999988887765444  3355666666666666421 1234566777888888899999998


Q ss_pred             CCCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       402 ~g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .++.+..+.++ ++++++++ ..+..++++.|++++||.+.||..+. ..+++++|++++  .+++++++++++|+++++
T Consensus       307 ~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~-~~~~~~iRis~~--~~~e~l~~al~rL~~~l~  383 (388)
T d1gdea_         307 MGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG-KAGEGYVRISYA--TAYEKLEEAMDRMERVLK  383 (388)
T ss_dssp             TTCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC-GGGTTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            88887766654 66677764 35678899998878899999998754 345689999997  578999999999999999


Q ss_pred             HcCC
Q psy16848        480 SLDL  483 (514)
Q Consensus       480 ~~~~  483 (514)
                      +.++
T Consensus       384 e~k~  387 (388)
T d1gdea_         384 ERKL  387 (388)
T ss_dssp             HTTC
T ss_pred             hcCC
Confidence            8764

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.5e-30  Score=262.61  Aligned_cols=341  Identities=18%  Similarity=0.149  Sum_probs=244.5

Q ss_pred             hhhcCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccc
Q psy16848         12 QVHKSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCY   85 (514)
Q Consensus        12 ~~~~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt   85 (514)
                      +.+.+|..+||+..++  +-.+|++++++.+++....+   ++....|..++.+++.+++.+..+.    +..+++++++
T Consensus        25 ~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~---~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~  101 (382)
T d1b5pa_          25 ELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKT---KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGS  101 (382)
T ss_dssp             HHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred             HHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCc---CCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHH
Confidence            4556888999996443  33468999999998886322   3334456777777777777766553    3445455557


Q ss_pred             cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         86 VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        86 ~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      +|+..++.+++.  +||.|+++.+.|......++.+|.+++.++..+                                 
T Consensus       102 ~al~~~~~~l~~--~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~---------------------------------  146 (382)
T d1b5pa_         102 QALFNLFQAILD--PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLP---------------------------------  146 (382)
T ss_dssp             HHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCG---------------------------------
T ss_pred             HHHHHHHHHhCC--CCCEEEECCCCcHHHHHHHHHhcCeEEEEeccc---------------------------------
Confidence            788888888876  999999999999998888777777766554310                                 


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~  245 (514)
                                                                                                  .+++
T Consensus       147 ----------------------------------------------------------------------------~~~~  150 (382)
T d1b5pa_         147 ----------------------------------------------------------------------------EEGF  150 (382)
T ss_dssp             ----------------------------------------------------------------------------GGTT
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0112


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      ..+.+.+.+..+++++++++++||||||.+++   +++|.++|++||+++|+||+|+...+........  . ...+..+
T Consensus       151 ~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~--~-~~~~~~i  227 (382)
T d1b5pa_         151 VPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPG--R-VAPEHTL  227 (382)
T ss_dssp             CCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGG--G-TCTTTEE
T ss_pred             CCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHH--H-cCCCCEE
Confidence            22233344444667899999999999999999   7999999999999999999999544322221111  1 1336789


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHH--hhhchHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRI--LSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      ++.|+||.++.+|   ||+++++++++.+.......  ....+...+.++...+..  .........++.++++++.+.+
T Consensus       228 ~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (382)
T d1b5pa_         228 TVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQS--TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLE  305 (382)
T ss_dssp             EEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhccCcHhheEEEEECHHHHHHHHHHHHhc--ccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHH
Confidence            9999999999768   99999999998887654443  234455555444444431  2234456677888888989999


Q ss_pred             HHHhCCCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        398 ELIQIGFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       398 ~L~~~g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      .+.+.|+.+..+.++ ++++.++. ..+...+.+.|. ++||.+.||..+..   ++++|++++  .++|++++++++|+
T Consensus       306 ~l~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~-e~gV~v~PG~~F~~---~~~iRis~~--~~~e~l~~al~rl~  379 (382)
T d1b5pa_         306 GLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAA---FGHVRLSYA--TSEENLRKALERFA  379 (382)
T ss_dssp             HHHHHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTC---TTEEEEECC--SCHHHHHHHHHHGG
T ss_pred             HHhhcCCeEecCCceEEEeEeCCCCCCCHHHHHHHHH-HCCEEEEeCcccCC---CCeEEEEEc--CCHHHHHHHHHHHH
Confidence            898888888777655 66777743 345677888885 89999999987543   469999997  57899999999887


Q ss_pred             HH
Q psy16848        476 AV  477 (514)
Q Consensus       476 ~~  477 (514)
                      ++
T Consensus       380 ~~  381 (382)
T d1b5pa_         380 RV  381 (382)
T ss_dssp             GG
T ss_pred             Hh
Confidence            65

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.97  E-value=7.3e-29  Score=253.07  Aligned_cols=353  Identities=15%  Similarity=0.106  Sum_probs=252.5

Q ss_pred             eeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC-----CcEEEEeccccccccc
Q psy16848         19 VTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK-----EAGLVFTSCYVANDST   91 (514)
Q Consensus        19 ~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~i~~~sGt~a~~~~   91 (514)
                      ..||++.++  +..++.+++++.+++........++....|..++.+.+++++.+.+|.     ++.++++++++|+..+
T Consensus        27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~  106 (418)
T d2r5ea1          27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT  106 (418)
T ss_dssp             CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred             CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhh
Confidence            468885433  233567999999988754333334555667788888888888887663     2345444556778888


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.+++.  |||.|+++.+.|......++..|..++.++....                                      
T Consensus       107 ~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~--------------------------------------  146 (418)
T d2r5ea1         107 IQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPN--------------------------------------  146 (418)
T ss_dssp             HHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEES--------------------------------------
T ss_pred             hhhccc--cccceeccccccchhhHHHHHcCCeEEEEEeccc--------------------------------------
Confidence            888876  9999999999999998888887777665432100                                      


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQV  251 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  251 (514)
                                             +.+                                       . ......+....+.
T Consensus       147 -----------------------~~~---------------------------------------~-~~~~~~~~~~~~~  163 (418)
T d2r5ea1         147 -----------------------KTG---------------------------------------G-TISSADWVLDNNE  163 (418)
T ss_dssp             -----------------------CCS---------------------------------------S-CEEGGGEECCHHH
T ss_pred             -----------------------ccc---------------------------------------c-chhhhhhhhhHHH
Confidence                                   000                                       0 0000012223344


Q ss_pred             HhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEcCC
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +.+...+++++++++++|||||.+++   +++|.++|++|++++|+||+|....... ...++..... ..+..+++.|+
T Consensus       164 ~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~-~~~~~i~~~S~  242 (418)
T d2r5ea1         164 LEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG-MWERTITIGSA  242 (418)
T ss_dssp             HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-TGGGEEEEEEH
T ss_pred             HhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCcccccccccc-ccceeeeeecC
Confidence            44455677899999999999999999   7889999999999999999999555432 2222332322 34678999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHHHH
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL------SSQEGVELRAKHQDIVAYLRNE  398 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~~l~~~  398 (514)
                      ||.++.+|   ||+++++++++.+.......  +.+.+.+.+.++...+...      .+.++.+++++++.+++.+.+.
T Consensus       243 SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  320 (418)
T d2r5ea1         243 GKTFSLTGWKIGWAYGPEALLKNLQMVHQNC--VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF  320 (418)
T ss_dssp             HHHTTCGGGCCEEEESCHHHHHHHHHHHTTT--TCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCcccccccccchhhhhhhhccccc--ccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhh
Confidence            99999778   99999999999888766554  3355666665555544321      1345778899999999999999


Q ss_pred             HHhCCCccccCCCc-EEEEEeCC------------CccHHHHHHHHHHhCCeEEecccCCCCCC----CCcEEEEEeCCC
Q psy16848        399 LIQIGFPVEHTPSH-IIPIKIGN------------PALNTKICDMLLKEKGHYVQPINYPTVPV----GEEKIRLAPTPF  461 (514)
Q Consensus       399 L~~~g~~~~~~~~~-~~~i~l~~------------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----~~~~iRl~~~~~  461 (514)
                      |++.|+.+..|.++ ++++.++.            ..+..++++.|+++.||.+.||..|....    +++++|+++.  
T Consensus       321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~--  398 (418)
T d2r5ea1         321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--  398 (418)
T ss_dssp             HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECC--
T ss_pred             HhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEec--
Confidence            99999988878766 55666532            24567899999878899999998755432    3579999996  


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~  479 (514)
                      .++|++++++++|++++.
T Consensus       399 ~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         399 KKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             SCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHc
Confidence            478999999999998763

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.97  E-value=3.4e-29  Score=253.57  Aligned_cols=350  Identities=14%  Similarity=0.084  Sum_probs=245.0

Q ss_pred             hhhhcCCceeeecccCC-----CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEE
Q psy16848         11 KQVHKSNRVTCRLSSVQ-----YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVF   81 (514)
Q Consensus        11 ~~~~~~g~~~~d~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~   81 (514)
                      +....+|..+||+..++     +-.++.+++++.+++....   ..+....|..++.+++.+.+.+.+|.    +..+++
T Consensus        23 ~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~---~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~   99 (395)
T d1xi9a_          23 RELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH---NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVT   99 (395)
T ss_dssp             HHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             HHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHhhhhcccccccccccccc
Confidence            33456788999996443     3346789999999987522   22344556777888888888877664    234555


Q ss_pred             eccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccC
Q psy16848         82 TSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTG  161 (514)
Q Consensus        82 ~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  161 (514)
                      +++++++..++.++..  +||.|+++.++|......++..|++++.++..+                             
T Consensus       100 ~G~~~~~~~~~~~~~~--~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~-----------------------------  148 (395)
T d1xi9a_         100 AAVTEALQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIE-----------------------------  148 (395)
T ss_dssp             SHHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEG-----------------------------
T ss_pred             cccchhhhhhhhhhcC--CCCEEEEcCCccccchhhhhhcCCEEEEEeccc-----------------------------
Confidence            5566778788877766  999999999999988877777777666543210                             


Q ss_pred             CccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec
Q psy16848        162 AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR  241 (514)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~  241 (514)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (395)
T d1xi9a_         149 --------------------------------------------------------------------------------  148 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCcc
Q psy16848        242 HNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH  318 (514)
Q Consensus       242 ~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~  318 (514)
                      .+++....+.+.+...++++++++++||||||.+++   +++|.++|++|++++|+||+|.....+..........  ..
T Consensus       149 ~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~  226 (395)
T d1xi9a_         149 EEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KD  226 (395)
T ss_dssp             GGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SS
T ss_pred             cccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcC--CC
Confidence            112222222333334567899999999999999999   7999999999999999999999554433322222222  23


Q ss_pred             CceEEEcCCcccccCCC---eEEEec--HHHHHHHHhhcCce-EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGT--KNFIDTIRSYAAGF-IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIV  392 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~--~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  392 (514)
                      +..+++.||||.++.+|   ||++..  ...+..+....... ......+.+.+.++..+++.. .+++++.++.+++++
T Consensus       227 ~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~  305 (395)
T d1xi9a_         227 VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERR  305 (395)
T ss_dssp             SCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence            56899999999998778   887643  23333332221111 002245566677777767633 457788899999999


Q ss_pred             HHHHHHHHhCC-CccccCCCc-EEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHH
Q psy16848        393 AYLRNELIQIG-FPVEHTPSH-IIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMID  468 (514)
Q Consensus       393 ~~l~~~L~~~g-~~~~~~~~~-~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id  468 (514)
                      +.+.+.|++.+ +.+..+.++ ++++.++..  .+..+++..+++++||.+.||..|. ..+++++|++++  .++|+++
T Consensus       306 ~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg-~~~~~~~Ris~~--~~~e~l~  382 (395)
T d1xi9a_         306 DYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG-EYGAGHFRAVFL--PPIEILE  382 (395)
T ss_dssp             HHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGC-GGGTTBEEEECC--SCHHHHH
T ss_pred             HHHHHHHHhCCCceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhC-CCCCCEEEEEec--CCHHHHH
Confidence            99999999984 455556544 566677532  4567888888778899999999754 345779999986  5789999


Q ss_pred             HHHHHHHHHHHH
Q psy16848        469 KFVTDLLAVWKS  480 (514)
Q Consensus       469 ~~~~~l~~~l~~  480 (514)
                      +++++|++++++
T Consensus       383 eal~rl~~~l~e  394 (395)
T d1xi9a_         383 EAMDRFEKFMKE  394 (395)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.97  E-value=9.7e-29  Score=250.18  Aligned_cols=348  Identities=12%  Similarity=0.055  Sum_probs=236.3

Q ss_pred             CCceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccc
Q psy16848         16 SNRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~   89 (514)
                      .|..++|+.-  .++..+|.+++++.++++.-.++     +..|..++.+.+.+++.+.+|.    +..++++++++++.
T Consensus        29 ~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~-----Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~  103 (394)
T d1c7na_          29 VGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLG-----YTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF  103 (394)
T ss_dssp             CCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCS-----SBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred             cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcC-----CCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhh
Confidence            5667888843  44555789999999998862121     2235556666666666666553    33455556667888


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .++.++..  |||.|++..+.|......++..|...+.++....+                    +.+            
T Consensus       104 ~~~~~~~~--pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~--------------------~~~------------  149 (394)
T d1c7na_         104 NAVREFTK--PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKD--------------------GYY------------  149 (394)
T ss_dssp             HHHHHHCC--TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEET--------------------TEE------------
T ss_pred             hhhccccc--cccccccccCcccchhhHHhhhhhccccccccccc--------------------ccc------------
Confidence            88888876  99999999999999888888777776654321000                    000            


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                                                                              ..|.+..+
T Consensus       150 ------------------------------------------------------------------------~~d~~~~~  157 (394)
T d1c7na_         150 ------------------------------------------------------------------------TIDFQKLE  157 (394)
T ss_dssp             ------------------------------------------------------------------------ECCHHHHH
T ss_pred             ------------------------------------------------------------------------cchhhhhh
Confidence                                                                                    01222222


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCccccCCCccCceEEEc
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~~~~~~~~~~~di~~~  325 (514)
                      ...   ..++++++++++||||||.+++   +++|+++|++++++||+||+|....+.. .............+..+++.
T Consensus       158 ~~~---~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~  234 (394)
T d1c7na_         158 KLS---KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFT  234 (394)
T ss_dssp             HHH---TCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEE
T ss_pred             hhh---ccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecc
Confidence            222   3456899999999999999999   7889999999999999999998444322 22111111111235678899


Q ss_pred             CCcccccCCC---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        326 TLGKAFGNIG---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      |+||.++.+|   |+++++ +.+.+.+........ ..+.+.....++....... ....++.++.++++++.+.+.++.
T Consensus       235 s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  312 (394)
T d1c7na_         235 APSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATS-GMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEV  312 (394)
T ss_dssp             CSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccChhhhhhhhhhhhhcc-ccccccccchhhhhhhcch-hhhhcccccccchhhhhhhhhhhc
Confidence            9999998767   777665 456566654432221 1123333444444433332 455667778888888888888876


Q ss_pred             C--CCccccCCCc-EEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        402 I--GFPVEHTPSH-IIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       402 ~--g~~~~~~~~~-~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      .  ++.+..+.|+ ++++.++. ..+..++++.|+++.||.+.||+.+. +.+++++|++++  .++|++++++++|+++
T Consensus       313 ~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~~~~~iRis~~--~~~e~i~eal~rl~~~  389 (394)
T d1c7na_         313 NHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFG-DGGIGFERINLA--APSSVIQESLERLNKA  389 (394)
T ss_dssp             HCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGC-GGGTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred             cccceeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhC-CCCCCEEEEEEe--CCHHHHHHHHHHHHHH
Confidence            5  5655556655 56777764 45688999999867799999999754 445789999997  5788999999999999


Q ss_pred             HHHcC
Q psy16848        478 WKSLD  482 (514)
Q Consensus       478 l~~~~  482 (514)
                      +++++
T Consensus       390 l~~Lk  394 (394)
T d1c7na_         390 LKDLK  394 (394)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98864

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.1e-28  Score=245.99  Aligned_cols=338  Identities=15%  Similarity=0.141  Sum_probs=243.9

Q ss_pred             hcCCceeeecccC--CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccc
Q psy16848         14 HKSNRVTCRLSSV--QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVA   87 (514)
Q Consensus        14 ~~~g~~~~d~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a   87 (514)
                      ...|..+||+..+  ++..++.+++++.+.+....   .++....|..++.+++.+++.+..+.    +..++++++++|
T Consensus        24 ~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~---~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~a  100 (375)
T d1o4sa_          24 IKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE---VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQA  100 (375)
T ss_dssp             HHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCC---CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred             HHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCC---cCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHH
Confidence            3468889999643  33346788998888776522   22334456777777777777766553    345666677788


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      +..++.+++.  +||.|+++.++|......+...+.....+....                                   
T Consensus       101 l~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~-----------------------------------  143 (375)
T d1o4sa_         101 LFNAFMALLD--PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFM-----------------------------------  143 (375)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCG-----------------------------------
T ss_pred             HHHHHHHHhC--CCCEEEEccCccccchhhhhccccccccccccc-----------------------------------
Confidence            8888888876  999999999999887766665555444332210                                   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                .+++..
T Consensus       144 --------------------------------------------------------------------------~~~~~~  149 (375)
T d1o4sa_         144 --------------------------------------------------------------------------SKNFQP  149 (375)
T ss_dssp             --------------------------------------------------------------------------GGTTCC
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      112223


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ..+.++....++++++++++|+||||.+++   +++|.++|++|+++||+||+|.....+..........+ ..+..+++
T Consensus       150 ~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~  228 (375)
T d1o4sa_         150 SLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE-GFDRIVYI  228 (375)
T ss_dssp             CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS-SSTTEEEE
T ss_pred             hhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccC-CCCCEEEE
Confidence            334444555677899999999999999999   78899999999999999999996554433222222222 34788999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      +|+||.++.+|   ||++++++.++.+.......  +...+...+......+    +......++.++++++.+.+.|++
T Consensus       229 ~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~~~~~~~l~~  302 (375)
T d1o4sa_         229 NGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHT--TSCINTVAQYAALKAL----EVDNSYMVQTFKERKNFVVERLKK  302 (375)
T ss_dssp             EESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH--TCSCCHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eechhhccCCccccccccccccchhhhhhhhccc--cccccccchhhhhhhc----ccchhhhHHHHHHHHHHHHHHHHh
Confidence            99999999768   99999999988877655443  3344444444333322    334456778889999999999999


Q ss_pred             CCCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy16848        402 IGFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       402 ~g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~  479 (514)
                      .|+.+..+.++ ++++.++.  +..+++.++++++||.+.||..|.   .++++|++++  .+++++++++++|+++++
T Consensus       303 ~g~~~~~p~gg~f~~~~~~~--~~~~~~~~ll~~~gV~v~pG~~F~---~~g~iRis~~--~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         303 MGVKFVEPEGAFYLFFKVRG--DDVKFCERLLEEKKVALVPGSAFL---KPGFVRLSFA--TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             TTCCCCCCSBSSEEEEECSS--CHHHHHHHHHHHHCEECEEGGGGT---CTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             cCceEecCCccEEEEEECCC--CHHHHHHHHHHhCCEEEEEccccC---CCCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence            99988877755 66788765  366778887778899999999764   2569999997  578999999999999875

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.96  E-value=2.6e-28  Score=247.83  Aligned_cols=348  Identities=16%  Similarity=0.070  Sum_probs=241.8

Q ss_pred             CCceeeecccCCC----CCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccc
Q psy16848         16 SNRVTCRLSSVQY----KVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a   87 (514)
                      ++..+||++.+..    +..+.+.+++.+.++..+.....+....|..++.+.+.+.+.+.+|.    +..+++++++++
T Consensus        27 ~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~a  106 (403)
T d1wsta1          27 ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQA  106 (403)
T ss_dssp             TSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHH
T ss_pred             CCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHH
Confidence            4566899965432    23346777777777653322222333446667777777777766553    334444455667


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCC----hHHHHHHHHhcccCCCcEEEeeccccccCCc
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHND----VNHLTQVLENMDVKIPKLVAFETVHSMTGAI  163 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
                      +..++.++..  +||.|+++.+.|......+..+|.+++.++..+    ...                            
T Consensus       107 l~~~~~~l~~--~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~----------------------------  156 (403)
T d1wsta1         107 LDLIGRVFLN--PGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDL----------------------------  156 (403)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHH----------------------------
T ss_pred             HHHHHHHHhh--cCCccccCCCcchhhhHHHhhccccceeEeecccCCcccc----------------------------
Confidence            8888888866  999999999999999888887777766544321    111                            


Q ss_pred             cchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC
Q psy16848        164 CPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN  243 (514)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~  243 (514)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (403)
T d1wsta1         157 --------------------------------------------------------------------------------  156 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccC
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHN  319 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~  319 (514)
                       .....+......++.+.++++++++||||.+++   +++|.++|++|+++||+||+|....+ +....++....  ..+
T Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~--~~~  233 (403)
T d1wsta1         157 -LEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFD--DYG  233 (403)
T ss_dssp             -HHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGC--SSS
T ss_pred             -ccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccC--CCC
Confidence             111112222233455778899999999999999   68899999999999999999994433 33332332222  336


Q ss_pred             ceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHH
Q psy16848        320 MDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL-SSQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       320 ~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l  395 (514)
                      ..++++|+||.+++ |   ||+++++++++.+.......  ....+...+.+....+... ....+.+.++.+.++++.+
T Consensus       234 ~~i~~~S~SK~~~~-G~RiG~~i~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (403)
T d1wsta1         234 RVIYLGTFSKILAP-GFRIGWVAAHPHLIRKMEIAKQSI--DLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAM  310 (403)
T ss_dssp             CEEEEEESTTTTCG-GGCCEEEEECHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEccccceecC-cccccccccchHHHHHHHHHHhhh--ccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHH
Confidence            88999999999974 6   99999999998877655443  3345555554444444322 2345677888888888898


Q ss_pred             HHHHHhC---CCccccCCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        396 RNELIQI---GFPVEHTPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       396 ~~~L~~~---g~~~~~~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      .+.|.+.   ++.+..+.+ .++++.+++..+...+++.|. ++||.+.|+..+.. ..+++++|++++ ..++++++++
T Consensus       311 ~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~~iRi~~~-~~~~~~l~~a  388 (403)
T d1wsta1         311 LEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAV-AKGVAYVPGEAFFVHRDKKNTMRLNFT-YVPEETIREG  388 (403)
T ss_dssp             HHHHHHHCCTTCEECCCSBSSEEEEECCTTCCTTTTHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECS-SSCHHHHHHH
T ss_pred             HHHHHhhccCCeEEeCCCceeEEEEECCCCCCHHHHHHHHH-HCCEEEEechhhcCCCCCCCEEEEEec-CCCHHHHHHH
Confidence            9988875   566666654 477788988777788888885 89999999985543 345689999997 3679999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      +++|++++++.
T Consensus       389 l~rl~~~l~~~  399 (403)
T d1wsta1         389 VRRLAETIKEE  399 (403)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.3e-28  Score=251.37  Aligned_cols=353  Identities=14%  Similarity=0.071  Sum_probs=247.5

Q ss_pred             CCceeeecccCC----CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC----c-EEEEecccc
Q psy16848         16 SNRVTCRLSSVQ----YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE----A-GLVFTSCYV   86 (514)
Q Consensus        16 ~g~~~~d~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~-~i~~~sGt~   86 (514)
                      ++..+|||+.+.    .+..+.+.+++.+.++........+....|..++.+++.+++.+..|.+    . .++++++++
T Consensus        36 ~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~  115 (420)
T d1vp4a_          36 ADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ  115 (420)
T ss_dssp             TSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred             CCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhh
Confidence            567799997542    3344567788777776532222233345577778888888887776532    2 344455567


Q ss_pred             ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCC----ChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHN----DVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~----d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                      ++..++.+++.  |||.|+++.+.|......++..|.+++.++..    |.+.++..+....                  
T Consensus       116 al~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~------------------  175 (420)
T d1vp4a_         116 ALDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFD------------------  175 (420)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHH------------------
T ss_pred             hHHHHHHhhhc--cccccccccccccchhHHHHHHhhhcccccccccccccchhhhhhhhhH------------------
Confidence            78888888766  99999999999999988888888877665432    2233322221110                  


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (420)
T d1vp4a_         176 --------------------------------------------------------------------------------  175 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCcc
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLH  318 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~  318 (514)
                               .....++.++++++++++||||.+++   +++|.++|++|++++|+||+|....+ +....+.....  ..
T Consensus       176 ---------~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~--~~  244 (420)
T d1vp4a_         176 ---------KNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG--GP  244 (420)
T ss_dssp             ---------HTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH--CT
T ss_pred             ---------HHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc--cc
Confidence                     00111223557778999999999999   79999999999999999999994433 32221221111  23


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVELRAKHQDIVAY  394 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~  394 (514)
                      +..++++|++|.+++ |   ||+++++++++.+.+....+  +.+.+...++++...++... .+++.+.++.++++++.
T Consensus       245 ~~~i~~~s~sk~~~~-G~RiG~~~~~~~~i~~l~~~~~~~--~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~  321 (420)
T d1vp4a_         245 ERVVLLNTFSKVLAP-GLRIGMVAGSKEFIRKIVQAKQSA--DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTV  321 (420)
T ss_dssp             TTEEEEEESTTTTCG-GGCEEEEECCHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHH
T ss_pred             cceeEEecccccccc-ccccccccccchhhhhhhhhhhhc--cccCchhhhhhhhhhcccccccccchhHHHHhhhhccc
Confidence            677888899998864 7   99999999999988766554  44566777766666665322 23455677778888888


Q ss_pred             HHHHHHhC-----CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-CCCcEEEEEeCCCCCHHHH
Q psy16848        395 LRNELIQI-----GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-VGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       395 l~~~L~~~-----g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-~~~~~iRl~~~~~~t~e~i  467 (514)
                      +.+.|++.     |+.+..+.++ ++++++++..+..++++.| +++||.+.||..|... ...+++|++++ ..+++++
T Consensus       322 ~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l-~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l  399 (420)
T d1vp4a_         322 MLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYA-KRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKI  399 (420)
T ss_dssp             HHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHH-HHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHH
T ss_pred             chhhhhhhhccCCCcEEecCCceEEEEEECCCCCCHHHHHHHH-HHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHH
Confidence            88888764     6777667655 7778888776777888888 4999999999876543 34679999997 4678999


Q ss_pred             HHHHHHHHHHHHHcCCc
Q psy16848        468 DKFVTDLLAVWKSLDLP  484 (514)
Q Consensus       468 d~~~~~l~~~l~~~~~~  484 (514)
                      ++++++|+++++++++.
T Consensus       400 ~~a~~rL~~~l~~~~~~  416 (420)
T d1vp4a_         400 VEGIKRLREVVLEYGKE  416 (420)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHh
Confidence            99999999999887643

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.3e-28  Score=246.63  Aligned_cols=356  Identities=15%  Similarity=0.135  Sum_probs=251.5

Q ss_pred             CCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC----cEEEEecc-cccc
Q psy16848         16 SNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE----AGLVFTSC-YVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~i~~~sG-t~a~   88 (514)
                      .+..+||+..+.  +-.++.+.+++.+++.. +....++....|..++.+.+.+++.+.+|.+    +.|++|+| ++++
T Consensus        23 ~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~-~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al  101 (418)
T d1w7la_          23 SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSG-DFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL  101 (418)
T ss_dssp             HTSCCEECCCCSCSSCCCHHHHHHHHHHTSS-CGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred             CCCCCEECCCCCCCCCCCHHHHHHHHHHHhC-CCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHH
Confidence            345689996433  33456788888887764 1112233445577788888888888877753    23555555 5678


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++..  +||.|+++.+.+......+...|++++.++......-                                
T Consensus       102 ~~~~~~l~~--~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~--------------------------------  147 (418)
T d1w7la_         102 FTAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQ--------------------------------  147 (418)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC----------------------------------
T ss_pred             HHHHHhhcc--CCceeeccccccchhHHHHHHcCCEeecccccccccc--------------------------------
Confidence            888888876  9999999999999988888888887765543100000                                


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                               .                                          ......+++...
T Consensus       148 -------------------------~------------------------------------------~~~~~~~~~~~d  160 (418)
T d1w7la_         148 -------------------------N------------------------------------------GELGSSSNWQLD  160 (418)
T ss_dssp             --------------------------------------------------------------------CCSEEGGGEECC
T ss_pred             -------------------------c------------------------------------------cccccccCcccc
Confidence                                     0                                          000001122222


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ...+.....+++++++++++|||||.+++   +++|.++|+++++++|+||+|....+ +....++..... ..+..+++
T Consensus       161 ~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~-~~~~~i~~  239 (418)
T d1w7la_         161 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG-MWERTLTI  239 (418)
T ss_dssp             HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT-TGGGEEEE
T ss_pred             hhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccc-ccccccee
Confidence            33334445677899999999999999999   78999999999999999999994433 333333333332 23578999


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh------hchHHHHHHHHHHHHHHH
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS------SQEGVELRAKHQDIVAYL  395 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~~l  395 (514)
                      .|+||.++.+|   ||+++++++++.+.......  ..+.+...+.++..++....      .......++.++++++.+
T Consensus       240 ~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l  317 (418)
T d1w7la_         240 GSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNS--VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM  317 (418)
T ss_dssp             EEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             cccCccccCCCCcccccccchhhhhhhccccccc--cccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhh
Confidence            99999998778   99999999998887766544  33567777777766665322      245677888899999999


Q ss_pred             HHHHHhCCCccccCCCc-EEEEEeCC-------------CccHHHHHHHHHHhCCeEEecccCCCC----CCCCcEEEEE
Q psy16848        396 RNELIQIGFPVEHTPSH-IIPIKIGN-------------PALNTKICDMLLKEKGHYVQPINYPTV----PVGEEKIRLA  457 (514)
Q Consensus       396 ~~~L~~~g~~~~~~~~~-~~~i~l~~-------------~~~~~~~~~~Ll~~~GI~v~~~~~~~~----~~~~~~iRl~  457 (514)
                      .+.|.+.|+.+..|.|+ ++++.+++             .....+++++|++++||.+.||+.+..    ..+++++|++
T Consensus       318 ~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis  397 (418)
T d1w7la_         318 IRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC  397 (418)
T ss_dssp             HHHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE
T ss_pred             hhhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE
Confidence            99999999988777765 56666532             234678899988899999999986543    2346899999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHH
Q psy16848        458 PTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l  478 (514)
                      ++  .+++++++++++|+++.
T Consensus       398 ~~--~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         398 FV--KDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             CC--CCHHHHHHHHHHHHHHH
T ss_pred             Ec--CCHHHHHHHHHHHHHHh
Confidence            86  57889999999998864

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.4e-27  Score=236.96  Aligned_cols=336  Identities=13%  Similarity=0.098  Sum_probs=227.8

Q ss_pred             CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccccccchhhccccCCCc
Q psy16848         27 QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVANDSTLFTLGKMIPGL  102 (514)
Q Consensus        27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a~~~~l~~l~~~~~gd  102 (514)
                      |+..+|.+++++.+.+..--+   ++....| .++.+++.+++++.+|.    +..++++++++++..++.++..  |||
T Consensus        10 df~~p~~i~eal~~~~~~~~~---~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~--~gd   83 (361)
T d1d2fa_          10 DFATAPCIIEALNQRLMHGVF---GYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE--TGE   83 (361)
T ss_dssp             SSCCCHHHHHHHHHHHTTCCC---CCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC--TTC
T ss_pred             CCCCCHHHHHHHHHHHhCCCC---CCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccc--ccc
Confidence            455678999999998864111   2222233 46777777777777664    2345455556677778888866  999


Q ss_pred             eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEe
Q psy16848        103 HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFV  182 (514)
Q Consensus       103 ~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (514)
                      .|+++.+.|......++..+..++.++....                                                 
T Consensus        84 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-------------------------------------------------  114 (361)
T d1d2fa_          84 GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQ-------------------------------------------------  114 (361)
T ss_dssp             EEEEEESCCHHHHHHHHHTTCEEEEEECEEC-------------------------------------------------
T ss_pred             ccccccccccchhHHHHhhcceEEeeccccc-------------------------------------------------
Confidence            9999999999998888777777665432100                                                 


Q ss_pred             eccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceE
Q psy16848        183 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKL  262 (514)
Q Consensus       183 ~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~  262 (514)
                                  +.+                                           ...|.+..++.+   ..+++++
T Consensus       115 ------------~~~-------------------------------------------~~~d~~~~~~~~---~~~~~~~  136 (361)
T d1d2fa_         115 ------------ADG-------------------------------------------WFCDMGKLEAVL---AKPECKI  136 (361)
T ss_dssp             ------------SSS-------------------------------------------EECCHHHHHHHH---TSTTEEE
T ss_pred             ------------ccc-------------------------------------------cccccccchhhc---ccCCcee
Confidence                        000                                           001344444444   2356899


Q ss_pred             EEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---e
Q psy16848        263 VAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---G  336 (514)
Q Consensus       263 vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G  336 (514)
                      +++++++||||.+++   +++|.++|+++|+++|+||+|....++......  ......+..+++.|+||.++.+|   |
T Consensus       137 i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~--~~~~~~~~~v~~~s~SK~~~~~g~R~g  214 (361)
T d1d2fa_         137 MLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP--WSNVARGDWALLTSGSKSFNIPALTGA  214 (361)
T ss_dssp             EEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC--GGGTCCSSEEEEECSHHHHTCGGGCCE
T ss_pred             EEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccc--cccccccccccccccccccccccccce
Confidence            999999999999998   789999999999999999999954443222111  12223356788899999998756   8


Q ss_pred             EEEecH-HHHHH-HHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCccccCCCc
Q psy16848        337 YIVGTK-NFIDT-IRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPVEHTPSH  412 (514)
Q Consensus       337 ~l~~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~  412 (514)
                      |++.+. ...+. +........ ..+.+...+.++...++.. ....++.+..++++++.+.+.+.+.  ++.+..+.++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg  292 (361)
T d1d2fa_         215 YGIIENSSSRDAYLSALKGRDG-LSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQST  292 (361)
T ss_dssp             EEEECSHHHHHHHHHHHHTTSC-CCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBC
T ss_pred             eeecchhHHHHHHhhhcccccc-cccchhhhHHHHHHHhhcc-chhhhcccccchhhHHHHHHHhhhhcccccccccCce
Confidence            876553 33232 222222221 1234445555555555543 3456677777888888888777654  6666666655


Q ss_pred             -EEEEEeC-CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        413 -IIPIKIG-NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       413 -~~~i~l~-~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                       ++++.++ ...+..+++++|++++||.+.||..+. ..+++++|+++.  .+++++++++++|++++++++
T Consensus       293 ~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~-~~~~~~vRis~~--~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         293 YLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG-EEGRGFVRLNAG--CPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             SEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccC-CCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHhcC
Confidence             5567764 345688999999877799999998754 445789999986  578999999999999998863

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.1e-28  Score=243.33  Aligned_cols=348  Identities=18%  Similarity=0.141  Sum_probs=244.2

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|+.|+||.+   +..+|  ||+|++++.+++++......   ..  ......++++.++++.+.+++++++||++|++
T Consensus        38 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e  112 (404)
T d2byla1          38 VEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR---AF--YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGE  112 (404)
T ss_dssp             TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT---TE--EESSHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccc---cc--ccchHHHHHHhhhhcccccccccccCccccch
Confidence            36666777643   22233  89999999999998554321   11  23456778888999999999999999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .+++......                                      .........+.+++.+++.||..-        
T Consensus       113 ~Aik~ar~~~--------------------------------------~~~~~~~~~~~~i~~~~~~~hg~t--------  146 (404)
T d2byla1         113 TACKLARKWG--------------------------------------YTVKGIQKYKAKIVFAAGNFWGRT--------  146 (404)
T ss_dssp             HHHHHHHHHH--------------------------------------HHTTCCCTTCCEEEEETTCCCCCS--------
T ss_pred             hHHHHHHHHh--------------------------------------hhccccccccccccccCCCccccc--------
Confidence            9997653200                                      000001122334455555543100        


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                        .+.....+.                           ..+...+.........+|.+|++.++
T Consensus       147 ------------------~~~~~~~~~---------------------------~~~~~~~~p~~~~~~~~p~~d~~~l~  181 (404)
T d2byla1         147 ------------------LSAISSSTD---------------------------PTSYDGFGPFMPGFDIIPYNDLPALE  181 (404)
T ss_dssp             ------------------HHHHTTCCC---------------------------HHHHTTSCSCCTTEEEECTTCHHHHH
T ss_pred             ------------------cceeccCCC---------------------------cccccCCCCCCCCeeEecccCHHHHH
Confidence                              000000000                           00001111112346678889999999


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEE
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      +.+..   +++++|+++++++..|...+    +++|+++|++||+++|+||+++ +|+.|..+  ..+.+++  .||++ 
T Consensus       182 ~~l~~---~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~--a~~~~gv--~PDi~-  253 (404)
T d2byla1         182 RALQD---PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL--AVDYENV--RPDIV-  253 (404)
T ss_dssp             HHHTS---TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGGTC--CCSEE-
T ss_pred             HhcCC---CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccc--hhhhcCC--CCCEE-
Confidence            98864   46899999999999998877    8999999999999999999998 66666543  2344555  78999 


Q ss_pred             cCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        325 GTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       325 ~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                       +++|.+++.   .|.+++++++.+.+.......  +++.+++.++++.++|+.+.++.   +.++.+++.+++.+.|.+
T Consensus       254 -~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~--T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~  327 (404)
T d2byla1         254 -LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS--TYGGNPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMK  327 (404)
T ss_dssp             -EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCC--SSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT
T ss_pred             -EECchhhCCCccceeeeechhhhhccCCCCCCc--CCCcCHHHHHHHHHHHHHHHhcC---chhhhhHhhHHHHHHHHh
Confidence             999999862   288899999887776554433  55889999999999999997766   777888889999999988


Q ss_pred             CCCccc---cCCCcEEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        402 IGFPVE---HTPSHIIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       402 ~g~~~~---~~~~~~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +.-+++   ...|.++.+.+.+  .....++..+++ ++||++.+.       +.+.+|++++..+|++|+|++++++++
T Consensus       328 l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~-~~Gvl~~~~-------~~~~i~l~PpL~it~~~id~~~~~l~~  399 (404)
T d2byla1         328 LPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR-DNGLLAKPT-------HGDIIRFAPPLVIKEDELRESIEIINK  399 (404)
T ss_dssp             SCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHH-HTTEECEEE-------ETTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             hccccceeeeecccEEEEEEecCCchhHHHHHHHHH-hCCeEEecC-------CCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence            732222   3356677777754  345677999996 999998643       245899999999999999999999999


Q ss_pred             HHHH
Q psy16848        477 VWKS  480 (514)
Q Consensus       477 ~l~~  480 (514)
                      ++++
T Consensus       400 al~~  403 (404)
T d2byla1         400 TILS  403 (404)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.96  E-value=6.4e-27  Score=238.16  Aligned_cols=345  Identities=15%  Similarity=0.115  Sum_probs=234.8

Q ss_pred             CCceeeecccCC--CC----CChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC----------CCcEE
Q psy16848         16 SNRVTCRLSSVQ--YK----VPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ----------KEAGL   79 (514)
Q Consensus        16 ~g~~~~d~~~~~--~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~~~i   79 (514)
                      .++.+||+..++  +-    ..+.+.+++.+.+....  ..++....|..++.+.+.+++.+.++          .+..+
T Consensus        28 ~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~  105 (412)
T d1bw0a_          28 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV  105 (412)
T ss_dssp             SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred             CCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCC--CCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence            345689996443  21    23456666666665422  22344455777788888877777643          22445


Q ss_pred             EEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccc
Q psy16848         80 VFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  159 (514)
Q Consensus        80 ~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~  159 (514)
                      +++++++|+..++.+++.  +||.|+++.++|......++..|.+++.++...                           
T Consensus       106 it~G~~~al~~~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~---------------------------  156 (412)
T d1bw0a_         106 LCSGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRP---------------------------  156 (412)
T ss_dssp             EESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG---------------------------
T ss_pred             Eecccccchhhhhhhhhc--cccceeeeeccchhhhhhhhccCcccccccccc---------------------------
Confidence            555566778888888876  999999999999888877777777666443210                           


Q ss_pred             cCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEE
Q psy16848        160 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKII  239 (514)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~  239 (514)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (412)
T d1bw0a_         157 --------------------------------------------------------------------------------  156 (412)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEecccccccc-CCCCCCcccc-C
Q psy16848        240 YRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLY-GEHGAGIGER-D  314 (514)
Q Consensus       240 v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~-g~~~~~~~~~-~  314 (514)
                        .+++....+.+.+...++++++++++|+||||.+++   +++|.++|++|++++|+||+|....+ +......... .
T Consensus       157 --~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~  234 (412)
T d1bw0a_         157 --ENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVA  234 (412)
T ss_dssp             --GGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTT
T ss_pred             --ccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccc
Confidence              112333334455555677899999999999999999   79999999999999999999994333 3221111111 1


Q ss_pred             CC-ccCceEEEcCCcccccCCC---eEEEecHH------HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHH
Q psy16848        315 GQ-LHNMDIISGTLGKAFGNIG---GYIVGTKN------FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVEL  384 (514)
Q Consensus       315 ~~-~~~~di~~~S~sK~lg~~G---G~l~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  384 (514)
                      .. .....++++|+||.++.+|   ||++++++      ++.........   ..+.+...++++...+.....+++.+.
T Consensus       235 ~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (412)
T d1bw0a_         235 DFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML---VCGPCTVVQAALGEALLNTPQEHLDQI  311 (412)
T ss_dssp             SSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH---HTCSCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             ccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccccc---ccCCchhhhhhcccccccccccccccc
Confidence            11 2245678889999999878   99987643      23322222211   223444444444444432234567888


Q ss_pred             HHHHHHHHHHHHHHHHhC-CCccccCCCc-EEEEEeC-----CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        385 RAKHQDIVAYLRNELIQI-GFPVEHTPSH-IIPIKIG-----NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       385 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~i~l~-----~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                      +++++++++.+.+.|.+. |+.+..+.++ +++++++     +..+..+++++|++++||.+.||..|.   .++++|++
T Consensus       312 ~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg---~~g~iRis  388 (412)
T d1bw0a_         312 VAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH---APGFTRLT  388 (412)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT---CTTEEEEE
T ss_pred             cchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccC---CCCeEEEE
Confidence            999999999999999876 8877767655 5566665     223577899999877899999999754   35699999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ++  .+++++++++++|++++++.
T Consensus       389 ~~--~~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         389 TT--RPVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             CC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             Ec--CCHHHHHHHHHHHHHHHHhc
Confidence            97  57899999999999998875

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.1e-27  Score=241.33  Aligned_cols=341  Identities=16%  Similarity=0.149  Sum_probs=249.1

Q ss_pred             CCceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEecc-cccc
Q psy16848         16 SNRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSC-YVAN   88 (514)
Q Consensus        16 ~g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sG-t~a~   88 (514)
                      ++...||++-  .++..++.+++++.+.+.+..   .++....|..++.+.+.+++.+.+|.    +..+++|+| ++++
T Consensus        24 ~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~---~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al  100 (382)
T d1u08a_          24 QQHQAINLSQGFPDFDGPRYLQERLAHHVAQGA---NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL  100 (382)
T ss_dssp             HHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred             ccCCCEEccCCCCCCCCCHHHHHHHHHHHhcCC---CCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHH
Confidence            4456788853  344456789999999887622   23445567778888888888887663    233555555 5678


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++.++..  +||.|+++.+.|......++..|...+.....                                     
T Consensus       101 ~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-------------------------------------  141 (382)
T d1u08a_         101 YAAITALVR--NGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-------------------------------------  141 (382)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-------------------------------------
T ss_pred             HHHHhhccc--ccceEEEecccccchhhhhhhccccceecccc-------------------------------------
Confidence            888888877  99999999999988876666666544322210                                     


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                               .+.+..+
T Consensus       142 -------------------------------------------------------------------------~~~~~~d  148 (382)
T d1u08a_         142 -------------------------------------------------------------------------PPHFRVD  148 (382)
T ss_dssp             -------------------------------------------------------------------------TTTCCCC
T ss_pred             -------------------------------------------------------------------------cccccCC
Confidence                                                                                     1111122


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      ...+++...++++++++++|+||||.+++   +++|.++|++++++++.|++|....................+..+++.
T Consensus       149 ~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  228 (382)
T d1u08a_         149 WQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVS  228 (382)
T ss_dssp             HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEE
T ss_pred             HHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEe
Confidence            23344445567899999999999999999   688888899999999999999854432211111111111345789999


Q ss_pred             CCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        326 TLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       326 S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      |+||.++.+|   ||+++++++++.+.......  ..+.+.+.+.++..+++.. .+++.++++.++++++.+.+.+...
T Consensus       229 s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~  305 (382)
T d1u08a_         229 SFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYL--TFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES  305 (382)
T ss_dssp             EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred             eccccccCCcccchhhhccchhHHHHHhhhccc--ccccccccccccccccccc-hHHHHHHHHHHHhhhhhhhhhhccC
Confidence            9999998778   99999999998887665443  3467888888888888755 4677888999999999999998888


Q ss_pred             CCccccCCCc-EEEEEeCC--CccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        403 GFPVEHTPSH-IIPIKIGN--PALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       403 g~~~~~~~~~-~~~i~l~~--~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      |+.+..+.|+ +++++++.  ..+..+++++|++++||.+.||..+.. +.+.+++|++++  .++|++++++++|++
T Consensus       306 g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~--~~~e~l~~al~RL~~  381 (382)
T d1u08a_         306 RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ  381 (382)
T ss_dssp             SCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             CcEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence            9988877765 67788874  356788999988789999999997654 345689999997  478999999988875

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.96  E-value=7.9e-28  Score=245.74  Aligned_cols=365  Identities=17%  Similarity=0.141  Sum_probs=231.7

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHc--CCCcEEEEeccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLH--QKEAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~i~~~sGt~a   87 (514)
                      .+|+.|+|+.+   +..+|  ||++.+++.+++++......  .   ...+...++.+++.++.  +.++++|++|||+|
T Consensus        38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~--~---~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA  112 (431)
T d1zoda1          38 ADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS--E---MLSRPVVDLATRLANITPPGLDRALLLSTGAES  112 (431)
T ss_dssp             TTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT--T---CCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHH
T ss_pred             CCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcccccc--c---cccHHHHHHHHHHHHhCCcccceeeecccccch
Confidence            36777777743   33344  79999999999998654221  1   12456678899999987  56788999999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ++.|++...                                              ..++|++++.|+|+||..-..+   
T Consensus       113 ~e~Alk~Ar----------------------------------------------~~t~r~~i~~~~~~yHG~t~~~---  143 (431)
T d1zoda1         113 NEAAIRMAK----------------------------------------------LVTGKYEIVGFAQSWHGMTGAA---  143 (431)
T ss_dssp             HHHHHHHHH----------------------------------------------HHHTCCEEEEETTCCCCSSHHH---
T ss_pred             HHHHHHHHH----------------------------------------------HhcCCcceeecccccccccchh---
Confidence            999996443                                              2234556666666665110000   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                        ..+.               +..+....+                ........++.++... .............+.+.
T Consensus       144 --~~~~---------------~~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  189 (431)
T d1zoda1         144 --ASAT---------------YSAGRKGVG----------------PAAVGSFAIPAPFTYR-PRFERNGAYDYLAELDY  189 (431)
T ss_dssp             --HHTC---------------CSSCCSSSC----------------CCCTTEEEECCCCTTS-CCCEETTEECHHHHHHH
T ss_pred             --hccc---------------ccccccccC----------------CcccCceeeeeecccc-cccccccchhhhhhHHH
Confidence              0000               000000000                0000000000000000 00000000000112344


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      ....+.....++++++++++++...|...+    +++|+++|++||+++|.||+++ +|+.|..+  ....+++  .||+
T Consensus       190 ~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~--~~~~~gv--~PDi  265 (431)
T d1zoda1         190 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF--ACQRDGV--TPDI  265 (431)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--THHHHTC--CCSE
T ss_pred             HHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccc--ccccCCC--Ccch
Confidence            445555555678999999999988888766    8999999999999999999999 67766543  2234454  8999


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +  +++|++++ |   +.+++.++..+...........+.+.+++.++++.++++.+.++.   ..++..++.+++.+.+
T Consensus       266 ~--~~gK~l~g-G~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l  339 (431)
T d1zoda1         266 L--TLSKTLGA-GLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGL  339 (431)
T ss_dssp             E--EECHHHHT-TSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             h--cccccccc-ccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhhh
Confidence            9  99999987 4   777788877776655433333466899999999999999887666   5666666666666655


Q ss_pred             HhC----CCc-cccCCCcEEEEEeC--------CCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        400 IQI----GFP-VEHTPSHIIPIKIG--------NPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       400 ~~~----g~~-~~~~~~~~~~i~l~--------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      .++    .+. -+...|.++.+.+.        .......+.+.++ ++|+.......   +...+.+|++++..+|++|
T Consensus       340 ~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~-~~Gl~~~~~~~---~~~~~~i~l~Ppl~it~~e  415 (431)
T d1zoda1         340 LDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQL---PGMGGVFRIAPPLTVSEDE  415 (431)
T ss_dssp             HHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECC---TTSCCEEEECCCTTCCHHH
T ss_pred             hhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHH-HhCcccCeeee---cCCCCEEEEECCCCCCHHH
Confidence            543    322 12345667777662        1123567888886 89987532222   2345789999999999999


Q ss_pred             HHHHHHHHHHHHHHc
Q psy16848        467 IDKFVTDLLAVWKSL  481 (514)
Q Consensus       467 id~~~~~l~~~l~~~  481 (514)
                      +|+++++++++++++
T Consensus       416 id~~~~~l~~al~~v  430 (431)
T d1zoda1         416 IDLGLSLLGQAIERA  430 (431)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999874

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.5e-27  Score=239.08  Aligned_cols=330  Identities=18%  Similarity=0.129  Sum_probs=239.0

Q ss_pred             eeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhh
Q psy16848         19 VTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        19 ~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~   94 (514)
                      ..||++.++  +-.+|.+++++.+.+.+. .   ++...    ....++++.++++++.+  +.++++++++++..++.+
T Consensus        26 ~~I~ls~g~p~~~~p~~i~~al~~~l~~~-~---~Y~~~----~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~   97 (368)
T d1v2da_          26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQ-D---QYAPP----AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS   97 (368)
T ss_dssp             TCEECCCCSCSSCCCHHHHHHHHHHTTTS-C---SCCCT----TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCEEecCCCCCCCCCHHHHHHHHHHhhcc-c---CCCCC----cCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhc
Confidence            368885433  334678999988877541 1   22222    22457788888888754  457677778888888888


Q ss_pred             ccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhh
Q psy16848         95 LGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH  174 (514)
Q Consensus        95 l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
                      +..  +||.|+++.++|......++..+..++.++..                                           
T Consensus        98 l~~--~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~-------------------------------------------  132 (368)
T d1v2da_          98 LVG--PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLD-------------------------------------------  132 (368)
T ss_dssp             HCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECE-------------------------------------------
T ss_pred             ccc--ccccccccCCcchhhhhHHHhcCCccceeccc-------------------------------------------
Confidence            876  99999999999998887777776665543220                                           


Q ss_pred             hcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh
Q psy16848        175 QHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN  254 (514)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~  254 (514)
                                                                                       ...+.+..+.+.+++
T Consensus       133 -----------------------------------------------------------------~~~~~~~~d~~~l~~  147 (368)
T d1v2da_         133 -----------------------------------------------------------------LTPEGFRLDLSALEK  147 (368)
T ss_dssp             -----------------------------------------------------------------EETTEEECCHHHHHT
T ss_pred             -----------------------------------------------------------------cccccccCCHHHHHH
Confidence                                                                             001122233344555


Q ss_pred             ccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      ...++++++++++|+||||.+++   +++|.++|++||+++|+||+|............. .  ...+..+++.|+||.+
T Consensus       148 ~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~sk~~  224 (368)
T d1v2da_         148 ALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLR-E--FAPERTFTVGSAGKRL  224 (368)
T ss_dssp             TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHH-H--HCTTTEEEEEEHHHHT
T ss_pred             hhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccc-c--ccccccceeecccccc
Confidence            55667899999999999999999   7889999999999999999998555433221111 1  1235677888999988


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS-SQEGVELRAKHQDIVAYLRNELIQIGFPVE  407 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  407 (514)
                      +.+|   ||++.++++++.+.......  +.+.+...+.++..++.... ..++++.++.++++++++.+.|++.|+.+.
T Consensus       225 ~~~G~R~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~  302 (368)
T d1v2da_         225 EATGYRVGWIVGPKEFMPRLAGMRQWT--SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY  302 (368)
T ss_dssp             TCGGGCCEEEECCTTTHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             cccccccccccccccccchhhhhhhcc--ccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEe
Confidence            8767   99999999998887766544  34667777766666665432 456788888999999999999999999987


Q ss_pred             cCCC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        408 HTPS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTV-PVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       408 ~~~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      .+.+ .++++.++. .+..   + +++++||.+.|+..|.. ..+.+++|++++  .++|++++++++|++++
T Consensus       303 ~p~g~~~~~~~l~~-~~~~---~-ll~~~gI~v~pg~~F~~~~~~~~~iRis~~--~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         303 VPEGTYFLMAELPG-WDAF---R-LVEEARVALIPASAFYLEDPPKDLFRFAFC--KTEEELHLALERLGRVV  368 (368)
T ss_dssp             CCSBSSEEEEECTT-CCHH---H-HHHHTCEECEEGGGGCSSSCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             cCCceeEEEEeCCc-cHHH---H-HHHhCCEEEEechhhCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence            7764 577788875 3333   2 34689999999986543 345789999987  57899999999999863

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.4e-27  Score=238.12  Aligned_cols=335  Identities=19%  Similarity=0.182  Sum_probs=234.6

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC--CcEEEEeccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK--EAGLVFTSCYVA   87 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~i~~~sGt~a   87 (514)
                      .+|+.|+||.+   +..+|  ||++.+++.+++++.... +  ..+  ..+...++.+++.+....  +++.|++||++|
T Consensus        34 ~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~-~--~~~--~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA  108 (387)
T d1vefa1          34 AEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM-P--QTL--PTPMRGEFYRTLTAILPPELNRVFPVNSGTEA  108 (387)
T ss_dssp             TTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCC-C--TTS--CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHH
T ss_pred             CCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhccc-c--ccc--CCchHHHHHHHhhhhccccceeeccccCchHH
Confidence            47777888743   23344  899999999999984321 1  111  235667777777776543  467888999999


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                      ++.|++...                                              ..+++++++.++++||..-      
T Consensus       109 ~e~Aik~Ar----------------------------------------------~~t~r~~ii~~~~~yHG~t------  136 (387)
T d1vefa1         109 NEAALKFAR----------------------------------------------AHTGRKKFVAAMRGFSGRT------  136 (387)
T ss_dssp             HHHHHHHHH----------------------------------------------HHHSCCEEEEETTCCCCSS------
T ss_pred             HHHHHHHHH----------------------------------------------hhcccceecccccCCCCCc------
Confidence            999995443                                              2334556666666664110      


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                          .|.....+.                           ..+...+......+..+|++|.+.
T Consensus       137 --------------------~~~~~~s~~---------------------------~~~~~~~~p~~~~~~~~p~~d~~~  169 (387)
T d1vefa1         137 --------------------MGSLSVTWE---------------------------PKYREPFLPLVEPVEFIPYNDVEA  169 (387)
T ss_dssp             --------------------HHHHHTCCC---------------------------HHHHGGGCSCSSCEEEECTTCHHH
T ss_pred             --------------------cceEeccCC---------------------------ccccCCCCCCCCCceEeCCCCHHH
Confidence                                000000000                           000111111223467788899888


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceE
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      +++.++    +++++|+++++++..|...+    +++|+++|++||+++|.||+++ +|+.|..+  ....+++  .||+
T Consensus       170 l~~~~~----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~--~~~~~~v--~PDi  241 (387)
T d1vefa1         170 LKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF--AFEHFGI--VPDI  241 (387)
T ss_dssp             HHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--THHHHTC--CCSE
T ss_pred             HHHhcC----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCc--ccccCCc--CCce
Confidence            887774    46899999999999898766    8999999999999999999998 66766443  2234444  7999


Q ss_pred             EEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       323 ~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +  +++|.+++ |   +.++..+++.+.+.....+.  +++.+|+.++++.++|+.+.++.   ..++.+++.+++.+.|
T Consensus       242 ~--~~gK~l~g-G~~~~~~~~~~~~~~~~~~~~~g~--T~~gnPla~aaa~a~L~~l~~~~---~~~~v~~~g~~l~~~L  313 (387)
T d1vefa1         242 L--TLAKALGG-GVPLGVAVMREEVARSMPKGGHGT--TFGGNPLAMAAGVAAIRYLERTR---LWERAAELGPWFMEKL  313 (387)
T ss_dssp             E--EECGGGGT-TSSCEEEEEEHHHHHTSCTTSSCC--SSTTCHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred             e--eecccCCC-CccccccccceeeeeccccCCccc--cCCCCcchhhhcccchhhccccc---ccchHhhhhHHHHHHH
Confidence            9  99999986 5   77788888877766554443  56889999999999999986555   6788888999999999


Q ss_pred             HhCCCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        400 IQIGFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       400 ~~~g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      +++.-+.   +...|.++.+.+.+. ....+.+.++ ++|+.+.+       .+.+.+|++++..+|++|++++++++++
T Consensus       314 ~~l~~~~v~~vrg~Gl~~~ie~~~~-~~~~~~~~~~-~~g~l~~~-------~g~~~ir~~Ppl~it~~~ld~~~~~i~~  384 (387)
T d1vefa1         314 RAIPSPKIREVRGMGLMVGLELKEK-AAPYIARLEK-EHRVLALQ-------AGPTVIRFLPPLVIEKEDLERVVEAVRA  384 (387)
T ss_dssp             HTSCCTTEEEEEEETTEEEEEESSC-SHHHHHHHHH-HHCEECEE-------SSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             HhcCCCceEEEeecceEEEEEEeCC-chHHHHHHHH-HCCCeEEe-------cCCCEEEEECCccCCHHHHHHHHHHHHH
Confidence            8873332   233566888888764 3455666664 78887653       2356899999999999999999999998


Q ss_pred             HH
Q psy16848        477 VW  478 (514)
Q Consensus       477 ~l  478 (514)
                      ++
T Consensus       385 aL  386 (387)
T d1vefa1         385 VL  386 (387)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.4e-27  Score=240.66  Aligned_cols=343  Identities=16%  Similarity=0.146  Sum_probs=243.7

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcc--cCcchHHHHHHHHHHhHcCCC---cEEEEeccccccccchhh
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNI--SGNSLFHEKLEEDVAKLHQKE---AGLVFTSCYVANDSTLFT   94 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~---~~i~~~sGt~a~~~~l~~   94 (514)
                      |.|-++.. ..++.+.+++.+.++..-.+.+++...  ....+..++.++.+++++|..   ..+|+.|+|+++..++.+
T Consensus        25 Yld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~  103 (405)
T d1jf9a_          25 YLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANS  103 (405)
T ss_dssp             ECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred             EEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhc
Confidence            55554443 346789999999887643332222211  122467788999999999842   456666677887666655


Q ss_pred             cc--ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         95 LG--KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        95 l~--~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      +.  ...+||.|++.+.+|+++..+++..                                                   
T Consensus       104 ~~~~~~~~g~~il~~~~e~~s~~~~~~~~---------------------------------------------------  132 (405)
T d1jf9a_         104 WGNSNVRAGDNIIISQMEHHANIVPWQML---------------------------------------------------  132 (405)
T ss_dssp             HHHHHCCTTCEEEEETTCCGGGTHHHHHH---------------------------------------------------
T ss_pred             ccccccCCCCEEEEEeCcccchHHHHHHH---------------------------------------------------
Confidence            32  2459999999999999987554311                                                   


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLTQV  251 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~  251 (514)
                      +                                                         ...|++++.+|. .+.....+.
T Consensus       133 a---------------------------------------------------------~~~g~~v~~~~~~~~g~~~~~~  155 (405)
T d1jf9a_         133 C---------------------------------------------------------ARVGAELRVIPLNPDGTLQLET  155 (405)
T ss_dssp             H---------------------------------------------------------HHHTCEEEEECBCTTSCBCGGG
T ss_pred             H---------------------------------------------------------HHcCcEEEEECCCCCCcCCHHH
Confidence            1                                                         112333333331 111111222


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +++..+++|+++.+++++|.+|.+.|+++|.++|+++|+++++|.+|+.|..        +.+....++|++++|+||++
T Consensus       156 ~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~--------~id~~~~~~D~~~~s~hK~~  227 (405)
T d1jf9a_         156 LPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH--------PVDVQALDCDFYVFSGHKLY  227 (405)
T ss_dssp             HHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS--------CCCHHHHTCSEEEEEGGGTT
T ss_pred             HHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceecccc--------ccchhhcCCceeeccccccc
Confidence            3344567899999999999999999999999999999999999999997764        22222458999999999999


Q ss_pred             cCCC-eEEEecHHHHHHHHhhcCceE-------------------e-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        332 GNIG-GYIVGTKNFIDTIRSYAAGFI-------------------F-TTSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       332 g~~G-G~l~~~~~~~~~l~~~~~~~~-------------------~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                      |+.| |+++.+++.++.+.....++.                   + ..+.+.....++.++++++.+.+.+.+.++...
T Consensus       228 Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~  307 (405)
T d1jf9a_         228 GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN  307 (405)
T ss_dssp             SCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCCCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            9988 999999988766543221110                   0 125677788888999998877788889999999


Q ss_pred             HHHHHHHHHHhCCCc-cccC--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeCCCC
Q psy16848        391 IVAYLRNELIQIGFP-VEHT--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPTPFH  462 (514)
Q Consensus       391 ~~~~l~~~L~~~g~~-~~~~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~~~~  462 (514)
                      +.+++.+.++..+.. ...+  ..+++.+.++. ....++...| +++||.++.++.|..+     ..++.+|+|++.++
T Consensus       308 L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~-~~~~~~~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~yn  385 (405)
T d1jf9a_         308 LMHYALSQLESVPDLTLYGPQNRLGVIAFNLGK-HHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYN  385 (405)
T ss_dssp             HHHHHHHHHTTSTTEEEESCTTCCSEEEEEETT-CCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTC
T ss_pred             HHHHHHhhhhcCCcccccCCcCcCcEEEEEcCC-CCHHHHHHHH-HHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCC
Confidence            999999988887432 2222  45678888774 3466777777 6999999988765422     23578999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      |++|||+++++|+++++-+
T Consensus       386 t~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         386 THEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998764

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.6e-28  Score=246.91  Aligned_cols=208  Identities=19%  Similarity=0.236  Sum_probs=161.5

Q ss_pred             CCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        257 VKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      ..+++++++++++...|...+    ++.|+++|++||+++|+||+++ +|+.|..+  ..+.+++  .||++  +++|++
T Consensus       196 ~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~--a~~~~gv--~PDi~--~~gK~l  269 (425)
T d1sffa_         196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF--AMEQMGV--APDLT--TFAKSI  269 (425)
T ss_dssp             GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGTTS--CCSEE--EECGGG
T ss_pred             ccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhh--HHHhcCC--Cccce--eccccc
Confidence            346889999999998888766    8999999999999999999999 56666543  3345555  89999  899999


Q ss_pred             cCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC--CCcc
Q psy16848        332 GNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI--GFPV  406 (514)
Q Consensus       332 g~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  406 (514)
                      ++ |   |++++++++.+.+.....+.  +++.+++.++++.++|+.+.++.   ..++.+++.+++.+.|+++  ..+.
T Consensus       270 ~g-G~P~~av~~~~~i~~~~~~~~~~~--T~~gnpl~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~  343 (425)
T d1sffa_         270 AG-GFPLAGVTGRAEVMDAVAPGGLGG--TYAGNPIACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPE  343 (425)
T ss_dssp             GT-SSCCEEEEEEHHHHTTSCTTSBCC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             CC-CcceEEEEEcHHHHHhhCCCCCCC--CCCcCHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhhhhhhhhHhhCCc
Confidence            87 5   88899999888776554443  66889999999999999997666   5666677777777666554  2222


Q ss_pred             ---ccCCCcEEEEEeCC--------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        407 ---EHTPSHIIPIKIGN--------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       407 ---~~~~~~~~~i~l~~--------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                         +...|.++.+.+..        ......+.+.++ ++||++.+...     ..+.+|++++..+|++|+++++++++
T Consensus       344 v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~g~-----~~n~i~~~PpL~it~~eid~~l~~l~  417 (425)
T d1sffa_         344 IGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGP-----YYNVLRILVPLTIEDAQIRQGLEIIS  417 (425)
T ss_dssp             EEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEEST-----TSCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             eEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHH-HCCCEEeccCC-----CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence               34457788877632        123467888886 99999875432     24689999999999999999999999


Q ss_pred             HHHHHcC
Q psy16848        476 AVWKSLD  482 (514)
Q Consensus       476 ~~l~~~~  482 (514)
                      +++++++
T Consensus       418 ~al~eik  424 (425)
T d1sffa_         418 QCFDEAK  424 (425)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9999875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.95  E-value=6.9e-27  Score=235.34  Aligned_cols=336  Identities=16%  Similarity=0.147  Sum_probs=238.0

Q ss_pred             CceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCc-CcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchh
Q psy16848         17 NRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGT-RNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLF   93 (514)
Q Consensus        17 g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~   93 (514)
                      +..|.|.++... .+..+.+++.+.++.+....... .......+..+++++.+++++|.+  +.++++|||+++..++.
T Consensus         7 ~~~yld~~~~~~-~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~   85 (381)
T d1elua_           7 NKTYFNFGGQGI-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLW   85 (381)
T ss_dssp             TSEECCTTTCCC-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHH
T ss_pred             CCEEeeCCcccC-CCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcch
Confidence            445776654332 23468888888887543221111 111122456778999999999864  46777777889888887


Q ss_pred             hccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         94 TLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        94 ~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      ++. ..+||.|+++..+|+++...++.                                                     
T Consensus        86 ~l~-~~~g~~i~~~~~~~~s~~~~~~~-----------------------------------------------------  111 (381)
T d1elua_          86 GLD-WHQGDEILLTDCEHPGIIAIVQA-----------------------------------------------------  111 (381)
T ss_dssp             HSC-CCTTCEEEEETTCCHHHHHHHHH-----------------------------------------------------
T ss_pred             hhh-hcCCceEEEeccccceeeecccc-----------------------------------------------------
Confidence            764 34999999999999987643321                                                     


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC---CChhHHHH
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH---NDVNHLTQ  250 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~---~d~~~l~~  250 (514)
                                                                             .....|++++.++.   ...+..++
T Consensus       112 -------------------------------------------------------~~~~~g~~~~~v~~~~~~~~~~~~~  136 (381)
T d1elua_         112 -------------------------------------------------------IAARFGITYRFFPVAATLNQGDAAA  136 (381)
T ss_dssp             -------------------------------------------------------HHHHHCCEEEEECCGGGSSSSCHHH
T ss_pred             -------------------------------------------------------ccccccccccccccccccccchHHH
Confidence                                                                   11223445555552   23445667


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc----CCEEEEeccccccccCCCCCCccccCCCccCceEEEcC
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH----GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGT  326 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~----gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S  326 (514)
                      .+++..+++++++++++++|+||.+.|+++|.++|+++    ++++++|++|+.|..        +......++|++++|
T Consensus       137 ~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~--------~~~~~~~~~D~~~~s  208 (381)
T d1elua_         137 VLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL--------PLDFSRLEVDYYAFT  208 (381)
T ss_dssp             HHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB--------CCCTTTSCCSEEEEE
T ss_pred             HHHhhhcccccccccccccccccccchhhHHHHHHhhcccccccccccccccccccc--------ccccccccccccccc
Confidence            77888888999999999999999999999999999995    699999999997654        122224478999999


Q ss_pred             CcccccC-CC-eEEEecHHHHHHHHhhcCce------------E--------eccCCcHHHHHHHHHHHHHhhhch-HHH
Q psy16848        327 LGKAFGN-IG-GYIVGTKNFIDTIRSYAAGF------------I--------FTTSLPPTVLAGAREAIRILSSQE-GVE  383 (514)
Q Consensus       327 ~sK~lg~-~G-G~l~~~~~~~~~l~~~~~~~------------~--------~~~~~~~~~~~a~~~~l~~~~~~~-~~~  383 (514)
                      +||++++ .| |+++.+++..+.+.+...++            .        ...+.+.....++.++++.+...+ .+.
T Consensus       209 ~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~  288 (381)
T d1elua_         209 GHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEE  288 (381)
T ss_dssp             SSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             ccccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccccc
Confidence            9999964 56 88999888776654322111            0        011345566667777777665443 344


Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCcccc---CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC
Q psy16848        384 LRAKHQDIVAYLRNELIQI-GFPVEH---TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT  459 (514)
Q Consensus       384 ~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~  459 (514)
                      ..++..++.+++.+.|+++ ++.+..   +.++++.+.++.....+++.+.| +++||.++...      .++++|++++
T Consensus       289 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L-~~~gi~v~~~~------~~~~lRis~~  361 (381)
T d1elua_         289 RYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKL-EEQRIYLRTIA------DPDCIRACCH  361 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHH-HHTTEECEEET------TTTEEEEECC
T ss_pred             chhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHH-HhCCcEEEecC------CCCEEEEecC
Confidence            5678889999999999998 666543   35668888887666677888888 59999986432      2568999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~  477 (514)
                      .++|++|||+++++|+++
T Consensus       362 ~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         362 YITDEEEINHLLARLADF  379 (381)
T ss_dssp             TTCCHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999999864

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.95  E-value=1e-26  Score=237.91  Aligned_cols=314  Identities=12%  Similarity=0.090  Sum_probs=218.4

Q ss_pred             cCcchHHHHHHHHHHhHcCC------CcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhc-CCCCeeec
Q psy16848         56 SGNSLFHEKLEEDVAKLHQK------EAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRN-SSAPKIIY  128 (514)
Q Consensus        56 ~~~~~~~~~~~~~la~~~~~------~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~-~~~~~~~~  128 (514)
                      .|..++.+++.+.+.+++|.      ++.++++++++++..++.+++.  |||.|+++.+.|......++. .|.+++.+
T Consensus        84 ~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~--pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v  161 (431)
T d1m7ya_          84 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRTGVEIVPI  161 (431)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTTCCEEEEE
T ss_pred             cCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHhcCceeccc
Confidence            35667777777777777651      2445555567788888888876  999999999999888877764 45665544


Q ss_pred             cCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhH
Q psy16848        129 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM  208 (514)
Q Consensus       129 ~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i  208 (514)
                      +....+                                                            +.            
T Consensus       162 ~~~~~~------------------------------------------------------------~~------------  169 (431)
T d1m7ya_         162 HCTSSN------------------------------------------------------------GF------------  169 (431)
T ss_dssp             ECCGGG------------------------------------------------------------TS------------
T ss_pred             cccchh------------------------------------------------------------cc------------
Confidence            321000                                                            00            


Q ss_pred             HHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc--cCCCceEEEEecCCCCCccccC---HHHHHH
Q psy16848        209 DIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP---LKELCE  283 (514)
Q Consensus       209 ~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~---l~~l~~  283 (514)
                                                       ..|.+.+++.+.+.  ...+++++++++|+||||.+++   +++|.+
T Consensus       170 ---------------------------------~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~  216 (431)
T d1m7ya_         170 ---------------------------------QITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS  216 (431)
T ss_dssp             ---------------------------------CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             ---------------------------------cccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccc
Confidence                                             01344555555442  3456889999999999999999   789999


Q ss_pred             HHHHcCCEEEEeccccccccC-CCCCCccccC--------CCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhh
Q psy16848        284 VSHQHGALTFVDEVHAVGLYG-EHGAGIGERD--------GQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSY  351 (514)
Q Consensus       284 l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~--------~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~  351 (514)
                      +|++|++++|+||+|....++ ....++.+..        ....+..+++.|+||.+|.+|   ||++++++++......
T Consensus       217 ~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~  296 (431)
T d1m7ya_         217 FVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK  296 (431)
T ss_dssp             HHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH
T ss_pred             cccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHH
Confidence            999999999999999954433 2222221111        112346799999999999767   9999988876554443


Q ss_pred             cCceEeccCCcHHHHHHHHHHHHH--hhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-EEEEEeCCC------c
Q psy16848        352 AAGFIFTTSLPPTVLAGAREAIRI--LSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGNP------A  422 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~~------~  422 (514)
                      ....  . ..+...+.++.+.+..  ..+..+.+.+++++++++.+.+.|++.|+++..+.++ ++++.++..      .
T Consensus       297 ~~~~--~-~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~  373 (431)
T d1m7ya_         297 MSSF--G-LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFE  373 (431)
T ss_dssp             HGGG--S-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHH
T ss_pred             Hhcc--c-cccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCccc
Confidence            3222  1 2333333333333321  1234677888999999999999999999998877655 666777531      2


Q ss_pred             cHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        423 LNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       423 ~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      +..+++++|++++||.+.||..|.. .+++++|++++ ..+++++++++++|++++++.
T Consensus       374 ~~~~l~~~ll~~~gV~v~PG~~F~~-~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         374 AEMELWKKIVYEVHLNISPGSSCHC-TEPGWFRVCFA-NLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             HHHHHHHHHHHTSCEECEEGGGGTC-SSTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCEEEEeccccCC-CCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHh
Confidence            3457888888788999999987553 34679999996 356788999999999998763

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.2e-26  Score=234.22  Aligned_cols=343  Identities=15%  Similarity=0.116  Sum_probs=235.9

Q ss_pred             hhcCCceeeecccCC--CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEec-ccc
Q psy16848         13 VHKSNRVTCRLSSVQ--YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTS-CYV   86 (514)
Q Consensus        13 ~~~~g~~~~d~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~s-Gt~   86 (514)
                      ...+|..+||+..++  +-.++.+.+++.+..    ....++....|..++.+.+.+++.+..|.   ++.+++|+ +++
T Consensus        23 ~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~----~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~   98 (389)
T d2gb3a1          23 AKKRGVRIHHLNIGQPDLKTPEVFFERIYENK----PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSE   98 (389)
T ss_dssp             HHHTTCEEEECSSCCCCSCCCTHHHHHHHHTC----CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHH
T ss_pred             HHHcCCCEEECCCCCCCCCCCHHHHHHHHhcC----CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccc
Confidence            345888999996433  223556667665432    22233444556777777788777777653   22355555 556


Q ss_pred             ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccch
Q psy16848         87 ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPL  166 (514)
Q Consensus        87 a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
                      ++..++.+++.  +||.|+++.+.|......++..|..++.++..+                                  
T Consensus        99 ~l~~~~~~l~~--~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~----------------------------------  142 (389)
T d2gb3a1          99 AILFSFAVIAN--PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRM----------------------------------  142 (389)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCG----------------------------------
T ss_pred             ccccccccccc--CCCeEEEeCCCCccccccccccCcccccccccc----------------------------------
Confidence            67777778876  999999999999888877777776655443310                                  


Q ss_pred             hHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChh
Q psy16848        167 KELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVN  246 (514)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~  246 (514)
                                                                                                  ++..
T Consensus       143 ----------------------------------------------------------------------------~~~~  146 (389)
T d2gb3a1         143 ----------------------------------------------------------------------------EEGF  146 (389)
T ss_dssp             ----------------------------------------------------------------------------GGTS
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0011


Q ss_pred             HHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        247 HLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       247 ~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      ...+.+.....++++++++++|+||||.+++   +++|.++|++|++++|+||+|.............   ....+..++
T Consensus       147 ~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~---~~~~~~~~v  223 (389)
T d2gb3a1         147 AIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASAL---SIESDKVVV  223 (389)
T ss_dssp             CCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGG---GSCCTTEEE
T ss_pred             chhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccc---ccccccccc
Confidence            1112233445677899999999999999999   7999999999999999999998544333221111   113467888


Q ss_pred             EcCCcccccCCC---eEEEecHHHH-HHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q psy16848        324 SGTLGKAFGNIG---GYIVGTKNFI-DTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNEL  399 (514)
Q Consensus       324 ~~S~sK~lg~~G---G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  399 (514)
                      +.|+||.++.+|   ||++++++.+ ....... ..  ..+.+...+.++...+... +.++++.++.++++++.+.+.|
T Consensus       224 ~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L  299 (389)
T d2gb3a1         224 IDSVSKKFSACGARVGCLITRNEELISHAMKLA-QG--RLAPPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKL  299 (389)
T ss_dssp             EEESTTTTTCGGGCCEEEECSCHHHHHHHHHHH-HH--SCCCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCcccceeeeeccchhHHHHHhhhh-hc--ccccccccccccccccccc-chhcccccccccccchhhhhhh
Confidence            889999998878   9999876544 3333332 21  2244556666655555432 4567788999999999999999


Q ss_pred             HhCCCc-cccCC-CcEEEEEeCCCccHHHHHHHHHHh-----CCeEEecccCCCCC--CCCcEEEEEeCCCCCHHHHHHH
Q psy16848        400 IQIGFP-VEHTP-SHIIPIKIGNPALNTKICDMLLKE-----KGHYVQPINYPTVP--VGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       400 ~~~g~~-~~~~~-~~~~~i~l~~~~~~~~~~~~Ll~~-----~GI~v~~~~~~~~~--~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      +++++. +..+. +.++++.++.. +..+++++|+++     +||.+.|+..+...  .+++++|++++  .++++++++
T Consensus       300 ~~~~~~~~~~p~~g~~~~~~lp~~-~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~--~~~~~l~~a  376 (389)
T d2gb3a1         300 EEHGLKRFTKPSGAFYITAELPVE-DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRA  376 (389)
T ss_dssp             HHTTCCCBCCCSBSSEEEEECSSS-CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHH
T ss_pred             hhhccccccCCCceEEEEEeCCCC-CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc--CCHHHHHHH
Confidence            999654 33444 45777888753 578899988754     47888888854433  24689999986  688999999


Q ss_pred             HHHHHHHHHHc
Q psy16848        471 VTDLLAVWKSL  481 (514)
Q Consensus       471 ~~~l~~~l~~~  481 (514)
                      +++|++.++++
T Consensus       377 ~~~L~~~lk~f  387 (389)
T d2gb3a1         377 IDVLMEGLKMF  387 (389)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988864

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.95  E-value=3.1e-26  Score=232.57  Aligned_cols=343  Identities=17%  Similarity=0.196  Sum_probs=243.6

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCccc--CcchHHHHHHHHHHhHcCCC--cEEEEec-cccccccchhh
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNIS--GNSLFHEKLEEDVAKLHQKE--AGLVFTS-CYVANDSTLFT   94 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~--~~i~~~s-Gt~a~~~~l~~   94 (514)
                      |.|-++... -++.+.+++.+.++.+-.+.++.....  ...+..++.++.+++++|.+  +.+++++ +|+++..++..
T Consensus        25 Yld~a~~~~-~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~  103 (408)
T d1t3ia_          25 YLDNAATSQ-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYS  103 (408)
T ss_dssp             ECBTTTCCC-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred             EeeCccccC-CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhh
Confidence            444444432 367889999998886432222211111  12467788999999999974  4455555 45565554444


Q ss_pred             c--cccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         95 L--GKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        95 l--~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      +  ....+||+|++...+|+++..+++.                                                    
T Consensus       104 ~~~~~~~~g~~il~s~~e~~s~~~~~~~----------------------------------------------------  131 (408)
T d1t3ia_         104 WGMNNLKAGDEIITTVMEHHSNLVPWQM----------------------------------------------------  131 (408)
T ss_dssp             THHHHCCTTCEEEEETTCCGGGTHHHHH----------------------------------------------------
T ss_pred             ccccccCCCCEEEeecccchhhhhhhhh----------------------------------------------------
Confidence            2  1245899999999999998755431                                                    


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC-CChhHHHHH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH-NDVNHLTQV  251 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~  251 (514)
                                                                              .....|.++..++. .+.....+.
T Consensus       132 --------------------------------------------------------~~~~~g~~v~~~~~~~~~~~~~~~  155 (408)
T d1t3ia_         132 --------------------------------------------------------VAAKTGAVLKFVQLDEQESFDLEH  155 (408)
T ss_dssp             --------------------------------------------------------HHHHHCCEEEEECBCTTSSBCHHH
T ss_pred             --------------------------------------------------------hhhccCceEeeeeccccccccHHH
Confidence                                                                    11122333444441 122222344


Q ss_pred             HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        252 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       252 l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      +.+..+++|++|.+.+++|.+|..+|+++|.++|+++|+++++|.+|++|..        +.+....++|++++|.||++
T Consensus       156 l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~--------~id~~~~~~D~~~~s~hK~~  227 (408)
T d1t3ia_         156 FKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHY--------PLDVQLIDCDWLVASGHKMC  227 (408)
T ss_dssp             HHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS--------CCCHHHHTCSEEEEEGGGTT
T ss_pred             hhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccc--------cccccccCCceEEecccccc
Confidence            5555677899999999999999999999999999999999999999998765        22222458899999999999


Q ss_pred             cCCC-eEEEecHHHHHHHHhhcCceE------------------e-ccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        332 GNIG-GYIVGTKNFIDTIRSYAAGFI------------------F-TTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       332 g~~G-G~l~~~~~~~~~l~~~~~~~~------------------~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                      |+.| |+++.+++......+...++.                  + ..+.+.....++..+++++.+.+.+++.++...+
T Consensus       228 gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l  307 (408)
T d1t3ia_         228 APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL  307 (408)
T ss_dssp             SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            8888 999999998876654332210                  0 2245677778888899988777888899999999


Q ss_pred             HHHHHHHHHhC-CCcccc------CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCC-----CCCcEEEEEeC
Q psy16848        392 VAYLRNELIQI-GFPVEH------TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVP-----VGEEKIRLAPT  459 (514)
Q Consensus       392 ~~~l~~~L~~~-g~~~~~------~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~-----~~~~~iRl~~~  459 (514)
                      .+++.+.+.+. ++.+..      ..++++.+.++. .+..++...| +++||.++.|..|..+     ...+.+|+|++
T Consensus       308 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~-~~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~  385 (408)
T d1t3ia_         308 THYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG-LHASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARASLY  385 (408)
T ss_dssp             HHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-BCHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEECC
T ss_pred             HhHHhhhhccCccccccCCCccccCcceEEEEEeCC-CCHHHHHHHH-hhCCcEEecCcccccHHHHhhcCCccEEEECC
Confidence            99999999887 444332      234577777765 4577888888 6999999887766421     23568999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHc
Q psy16848        460 PFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      .++|++|||++++.|+++++..
T Consensus       386 ~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         386 FYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998764

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.95  E-value=2.3e-26  Score=235.13  Aligned_cols=312  Identities=13%  Similarity=0.090  Sum_probs=216.1

Q ss_pred             cCcchHHHHHHHHHHhHcC------CCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhc-CCCCeeec
Q psy16848         56 SGNSLFHEKLEEDVAKLHQ------KEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRN-SSAPKIIY  128 (514)
Q Consensus        56 ~~~~~~~~~~~~~la~~~~------~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~-~~~~~~~~  128 (514)
                      .|..++.+++.+.+.+.+|      .++.++++++++++..++.+++.  |||.|+++.++|......+.. .|.+++.+
T Consensus        83 ~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v  160 (428)
T d1iaya_          83 HGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRTGVQLIPI  160 (428)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTTCCEEEEE
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCC--CCCEEEEccCCchHHHHHHHHhcCCeEEEe
Confidence            3566777777777777665      23456556667788888888876  999999999999998877664 36666554


Q ss_pred             cCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhH
Q psy16848        129 RHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNM  208 (514)
Q Consensus       129 ~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i  208 (514)
                      +....+                                                            +.            
T Consensus       161 ~~~~~~------------------------------------------------------------~~------------  168 (428)
T d1iaya_         161 HCESSN------------------------------------------------------------NF------------  168 (428)
T ss_dssp             CCCTTT------------------------------------------------------------TT------------
T ss_pred             eccccc------------------------------------------------------------cc------------
Confidence            321000                                                            00            


Q ss_pred             HHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhh--ccCCCceEEEEecCCCCCccccC---HHHHHH
Q psy16848        209 DIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLEN--MDVKIPKLVAFETVHSMTGAICP---LKELCE  283 (514)
Q Consensus       209 ~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~--~~~~~~~~vv~~~~~nptG~~~~---l~~l~~  283 (514)
                                                       ..|.+.++..++.  ...++++++++++|+||||.+++   +++|.+
T Consensus       169 ---------------------------------~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~  215 (428)
T d1iaya_         169 ---------------------------------KITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLS  215 (428)
T ss_dssp             ---------------------------------CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             ---------------------------------ccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhhe
Confidence                                             0133444444332  24567899999999999999999   789999


Q ss_pred             HHHHcCCEEEEeccccccccC-CCCCCccccCC------CccCceEEEcCCcccccCCC---eEEEec-HHHHHHHHhhc
Q psy16848        284 VSHQHGALTFVDEVHAVGLYG-EHGAGIGERDG------QLHNMDIISGTLGKAFGNIG---GYIVGT-KNFIDTIRSYA  352 (514)
Q Consensus       284 l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~------~~~~~di~~~S~sK~lg~~G---G~l~~~-~~~~~~l~~~~  352 (514)
                      +|++||++||+||+|....++ ....++.....      ...+..+++.||||.++.+|   ||+++. +.+.+.+....
T Consensus       216 ~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~  295 (428)
T d1iaya_         216 FTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS  295 (428)
T ss_dssp             HHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH
T ss_pred             eeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhh
Confidence            999999999999999954433 22222211111      12356789999999998777   999875 55666665544


Q ss_pred             CceEeccCCcHHHHHHHHHHHH--HhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCc-EEEEEeCCC------cc
Q psy16848        353 AGFIFTTSLPPTVLAGAREAIR--ILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSH-IIPIKIGNP------AL  423 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~~~------~~  423 (514)
                      ...    ..+...+.++.+.+.  ...+..+++.++.++++++.+.+.|+..|+++..+.++ ++++.++..      .+
T Consensus       296 ~~~----~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~  371 (428)
T d1iaya_         296 SFG----LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDS  371 (428)
T ss_dssp             TTS----CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHH
T ss_pred             ccc----ccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCC
Confidence            322    233333333333332  22234567788888999999999999999988877655 667777531      23


Q ss_pred             HHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        424 NTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       424 ~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ..++++.|++++||.+.||..|. ..+++++|++++ ..+++++++++++|++++..
T Consensus       372 ~~~l~~~Ll~~~gV~v~PG~~F~-~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         372 EMSLWRVIINDVKLNVSPGSSFE-CQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HHHHHHHHHHTSCEECEEGGGGT-CSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCEEEEcchhcC-CCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence            45788888878899999998754 345789999996 45678899999999998864

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.9e-26  Score=232.16  Aligned_cols=219  Identities=20%  Similarity=0.229  Sum_probs=169.5

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCC-CCCcccc-C---HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVH-SMTGAIC-P---LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQL  317 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~-nptG~~~-~---l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~  317 (514)
                      +.+.+++.+.+. .++++++++++++ +..|... |   +++|+++|++||+++|.||+++ +|+.|..+  ..+.+++ 
T Consensus       190 ~~~~~~~~~~~~-~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~--~~~~~~v-  265 (429)
T d1s0aa_         190 DMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF--ACEHAEI-  265 (429)
T ss_dssp             GGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGGTC-
T ss_pred             hhhhhhhhhhhc-CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccc--cccccee-
Confidence            445555555544 4568999999986 6666644 3   8999999999999999999999 66776543  2234444 


Q ss_pred             cCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcC-c--eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy16848        318 HNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAA-G--FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDI  391 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~-~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  391 (514)
                       .||++  +++|.+++.+   |++++++++.+.+..... .  ...+++.+++.++++.++|+.+.++.   ..++.+++
T Consensus       266 -~PDi~--~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~---~~~~~~~~  339 (429)
T d1s0aa_         266 -APDIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGD---WQQQVADI  339 (429)
T ss_dssp             -CCSEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCH---HHHHHHHH
T ss_pred             -ccccc--ccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccccc---ccchhhHH
Confidence             89999  9999997633   888999999888765321 1  22356889999999999999997665   78888889


Q ss_pred             HHHHHHHHHhC-CCcc---ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        392 VAYLRNELIQI-GFPV---EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       392 ~~~l~~~L~~~-g~~~---~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      .+++++.|+++ ..+.   +...|.++.+++..+.....+.+.++ ++|+.+.+.        .+.+|++++..+|++|+
T Consensus       340 g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~~~~~~~~~~-~~Gl~~~~~--------g~~i~~~Ppl~it~~ei  410 (429)
T d1s0aa_         340 EVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFV-EQGVWIRPF--------GKLIYLMPPYIILPQQL  410 (429)
T ss_dssp             HHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHH-HTTEECCCB--------TTEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHHhccCCceEEEeecccEEEEEecCcccHHHHHHHHH-HCCcEEEec--------CCEEEEeCCcCCCHHHH
Confidence            99999999776 2222   23356788888887777888999996 899998632        35899999999999999


Q ss_pred             HHHHHHHHHHHHHc
Q psy16848        468 DKFVTDLLAVWKSL  481 (514)
Q Consensus       468 d~~~~~l~~~l~~~  481 (514)
                      |+++++|++++++.
T Consensus       411 d~~~~~l~~al~e~  424 (429)
T d1s0aa_         411 QRLTAAVNRAVQDE  424 (429)
T ss_dssp             HHHHHHHHHHTSSG
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988764

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=1.3e-26  Score=231.54  Aligned_cols=298  Identities=11%  Similarity=0.080  Sum_probs=203.7

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .++++.+++++++++|.+++++++|||+|+..++.++++  |||.|+++.++|.++..+++..|++++.+++++....  
T Consensus        46 ~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~--~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~--  121 (364)
T d2e7ja1          46 PPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAK--KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDY--  121 (364)
T ss_dssp             CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTC--
T ss_pred             hHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhC--CCcEEEeecccccccchHHHhccceEEEeeecccccc--
Confidence            357889999999999999999999999999999999977  9999999999999999999999998887765321100  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (364)
T d2e7ja1         122 --------------------------------------------------------------------------------  121 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc-CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                             ..|.+.+++.+++.. ..++++|++++++|++|.+.|+++|.++|++||+++++|++
T Consensus       122 -----------------------~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a  178 (364)
T d2e7ja1         122 -----------------------AITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGA  178 (364)
T ss_dssp             -----------------------CCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECT
T ss_pred             -----------------------ccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhcccc
Confidence                                   014566666666543 24567899999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC--eEEEecHHHHHHHHhhcCceEe------ccCCcHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--GYIVGTKNFIDTIRSYAAGFIF------TTSLPPTVLAGA  369 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--G~l~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~a~  369 (514)
                      |+.|...        ......++|++++|+||+++++|  |+++.++++++.+......+..      +...+.....++
T Consensus       179 ~~~g~~~--------~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T d2e7ja1         179 YAIGRMP--------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITL  250 (364)
T ss_dssp             TTBTTBC--------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHH
T ss_pred             chhhhhh--------hcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHH
Confidence            9876542        11113468999999999998755  9999998877665433222110      111122223333


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC---CCcEEEEEeCC--------CccHHHHHHHHHHhCCeE
Q psy16848        370 REAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT---PSHIIPIKIGN--------PALNTKICDMLLKEKGHY  438 (514)
Q Consensus       370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~i~l~~--------~~~~~~~~~~Ll~~~GI~  438 (514)
                      .++++... +.++... ...++.+++.+.|.+.|+.....   ......+..+.        ......+...+ ..+|+.
T Consensus       251 ~~~l~~~~-~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~  327 (364)
T d2e7ja1         251 MASFPHVR-ERIKRWD-EEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYREL-KSRKIH  327 (364)
T ss_dssp             HHHHHHHH-HHGGGHH-HHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHH-HHTTEE
T ss_pred             HHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHH-HhcCCc
Confidence            44444332 1111222 23456677888888887765432   22233333221        01112333445 477776


Q ss_pred             EecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        439 VQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       439 v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ...      +.....+|++. ..+|+||+++++++|+++++++
T Consensus       328 ~~~------~g~~~~~~~~~-~~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         328 GIK------PGLTRYFKLST-YGLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             CSC------TTCCSEEEEEC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred             eec------CCCcceEEEec-cCCCHHHHHHHHHHHHHHHHHh
Confidence            421      22234667663 4578999999999999999875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.95  E-value=4.9e-26  Score=226.85  Aligned_cols=208  Identities=13%  Similarity=0.084  Sum_probs=159.0

Q ss_pred             ccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF  331 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l  331 (514)
                      ...++++++++++|+||||.+++   +.+|.++|++|++++|+||+|.........  ...... ..+..+++.|+||.+
T Consensus       140 ~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~--~~~~~~-~~~~~i~~~S~SK~~  216 (355)
T d1lc5a_         140 ALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETG--FIPALK-DNPHIWVLRSLTKFY  216 (355)
T ss_dssp             HCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC--SGGGCT-TCTTEEEEEESTTTT
T ss_pred             ccccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccc--cccccc-ccccceeeccccccc
Confidence            45667999999999999999999   788889999999999999999843222111  111111 346789999999999


Q ss_pred             cCCC---eEEEecHH-HHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcc
Q psy16848        332 GNIG---GYIVGTKN-FIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPV  406 (514)
Q Consensus       332 g~~G---G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  406 (514)
                      |.+|   ||++++++ +.+.++.....+    +.+.+.+.++.++++  ......+.+++++++.+++.+.|.++ ++.+
T Consensus       217 ~l~GlR~G~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  290 (355)
T d1lc5a_         217 AIPGLRLGYLVNSDDAAMARMRRQQMPW----SVNALAALAGEVALQ--DSAWQQATWHWLREEGARFYQALCQLPLLTV  290 (355)
T ss_dssp             TCTTTCCEEEECCCHHHHHHHHHHSCTT----CSCHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             ccccccccceeccchhhhHHHHhhcCCc----ccccccccccccccc--ccchhHHHHHHHHHHHHHHHHHHhhcCCcEE
Confidence            9768   99998755 445555444332    567777777777776  23456778888999999999999998 7776


Q ss_pred             ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        407 EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       407 ~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      .++.++++++.++.  +..++++.|. ++||.++++..+. ..+++++|++++   +++|+++++++|++++
T Consensus       291 ~p~~~~f~~~~~~~--~~~~~~~~L~-~~gv~vr~~~~f~-~~~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         291 YPGRANYLLLRCER--EDIDLQRRLL-TQRILIRSCANYP-GLDSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             CCCSSSEEEEEESC--TTCCHHHHHH-TTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEEECCC--CHHHHHHHHH-HCCcEEEeCccCC-CCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence            66777888888875  3567888895 8999999887533 334689999997   7999999999999864

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.94  E-value=6.1e-26  Score=229.45  Aligned_cols=349  Identities=16%  Similarity=0.139  Sum_probs=230.9

Q ss_pred             cCCceeeeccc---CCCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccc
Q psy16848         15 KSNRVTCRLSS---VQYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVAND   89 (514)
Q Consensus        15 ~~g~~~~d~~~---~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~   89 (514)
                      .+|++|+|+.+   +..+|  ||+|.+++.+++.+.+....   .+  .....+.+++.+.++.+.+.+.|++||++|+.
T Consensus        36 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~  110 (404)
T d1z7da1          36 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR---AF--FSVPLGICERYLTNLLGYDKVLMMNTGAEANE  110 (404)
T ss_dssp             TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCT---TS--EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCccc---cc--chHHHHHHHHhhhhccccceeeeeccccchHH
Confidence            36777888743   33344  89999999999998654322   11  24566788888999999999999999999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      .+++.....+..                                      .......+.+++.+.+.||.....+     
T Consensus       111 ~a~k~ar~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~hg~~~~~-----  147 (404)
T d1z7da1         111 TAYKLCRKWGYE--------------------------------------VKKIPENMAKIVVCKNNFSGRTLGC-----  147 (404)
T ss_dssp             HHHHHHHHHHHH--------------------------------------TSCCCTTCCEEEEETTC-------------
T ss_pred             HHHHHHHHHHhh--------------------------------------cccccccccccccccccCCCCcccc-----
Confidence            888654320000                                      0000011122333333332100000     


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHH
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLT  249 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  249 (514)
                                           ....+.                           ..+.......-.....+|.++.+.++
T Consensus       148 ---------------------~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~  179 (404)
T d1z7da1         148 ---------------------ISASTT---------------------------KKCTSNFGPFAPQFSKVPYDDLEALE  179 (404)
T ss_dssp             ------------------------------------------------------------------CEEEECTTCHHHHH
T ss_pred             ---------------------cccccc---------------------------cccccCCCCCCccccccccchHHHHH
Confidence                                 000000                           00000000001134455566666666


Q ss_pred             HHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEE
Q psy16848        250 QVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       250 ~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ..+.   .+++++|++++++...|...+    +++|+++|++||+++|+||+++ +|+.|..+  ..+.+++  .||++ 
T Consensus       180 ~~~~---~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~--~~e~~gv--~PDiv-  251 (404)
T d1z7da1         180 EELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL--CVHHYNV--KPDVI-  251 (404)
T ss_dssp             HHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS--GGGGGTC--CCSEE-
T ss_pred             HHhc---CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccc--cccccCC--CCCEE-
Confidence            6553   356899999999999998877    8999999999999999999998 66665543  2345555  79999 


Q ss_pred             cCCcccccCC---CeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH-
Q psy16848        325 GTLGKAFGNI---GGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI-  400 (514)
Q Consensus       325 ~S~sK~lg~~---GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~-  400 (514)
                       +++|++++.   .|++++++++.+.+.....+.  +++.+|+.++++.++|+.+.++.   ..++..++.+++.+.|. 
T Consensus       252 -t~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~--T~~gnpl~~aaa~a~L~~~~~~~---~~~~~~~~~~~~~~~l~~  325 (404)
T d1z7da1         252 -LLGKALSGGHYPISAVLANDDIMLVIKPGEHGS--TYGGNPLAASICVEALNVLINEK---LCENAEKLGGPFLENLKR  325 (404)
T ss_dssp             -EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH
T ss_pred             -EEcccccCCCCCcccccchHHHHccCCCCCcCc--CCCCCcchhhhhhhhhhhhhcch---hhhhhccchhHHHHHHHH
Confidence             999999762   388999999988776654443  55789999999999999887666   44445555555544443 


Q ss_pred             ---hCCCc-cccCCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        401 ---QIGFP-VEHTPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       401 ---~~g~~-~~~~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                         +.++. -+...|.++.+.+.+. ....++.++|+ ++|+.+.+.       +.+.||+.++..+|++++++++++|+
T Consensus       326 ~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~-~~Gl~~~~~-------~~~~ir~~Ppl~it~~~id~~~~~l~  397 (404)
T d1z7da1         326 ELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK-ENGLITRDV-------HDKTIRLTPPLCITKEQLDECTEIIV  397 (404)
T ss_dssp             HHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHH-HTTEECCEE-------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHH-hCCeEEecC-------CCCEEEEECCcCCCHHHHHHHHHHHH
Confidence               33321 2344677888888754 34567888896 999998643       34689999999999999999999999


Q ss_pred             HHHHHc
Q psy16848        476 AVWKSL  481 (514)
Q Consensus       476 ~~l~~~  481 (514)
                      ++++++
T Consensus       398 ~alk~~  403 (404)
T d1z7da1         398 KTVKFF  403 (404)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999875

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.94  E-value=6e-26  Score=231.02  Aligned_cols=345  Identities=19%  Similarity=0.147  Sum_probs=234.9

Q ss_pred             CCceeeecccC---CCCC--ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC-CCcEEEEeccccccc
Q psy16848         16 SNRVTCRLSSV---QYKV--PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ-KEAGLVFTSCYVAND   89 (514)
Q Consensus        16 ~g~~~~d~~~~---~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~i~~~sGt~a~~   89 (514)
                      +|++|+|+.+.   ..+|  ||+|.+++.+++++.....       ........+++++.+..+ .++++|++||++|++
T Consensus        50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e  122 (427)
T d2gsaa_          50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFG-------APCALENVLAEMVNDAVPSIEMVRFVNSGTEACM  122 (427)
T ss_dssp             TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCS-------SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHH
T ss_pred             CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccc-------cchhHHHHHHHHHHhhCCccccccccCCcHHHHH
Confidence            66777777443   2233  8999999999998733211       123556778888888764 567788899999999


Q ss_pred             cchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         90 STLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        90 ~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .|++.... .++...|..+..+|..+..++...+........                 |..         ++       
T Consensus       123 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~-----------------p~~---------~~-------  169 (427)
T d2gsaa_         123 AVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGL-----------------PSS---------PG-------  169 (427)
T ss_dssp             HHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTC-----------------CSC---------SS-------
T ss_pred             HHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCC-----------------CCC---------CC-------
Confidence            99987654 345556666777787776555554422111000                 000         00       


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                                                  ...........++.+|.+.+
T Consensus       170 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~l  189 (427)
T d2gsaa_         170 ------------------------------------------------------------VPKKTTANTLTTPYNDLEAV  189 (427)
T ss_dssp             ------------------------------------------------------------SCHHHHTTEEEECTTCHHHH
T ss_pred             ------------------------------------------------------------CcccCccceeccCcchHHHH
Confidence                                                                        00011234566778899999


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~  324 (514)
                      ++.+++. ..+.++|++++++...|.+.+    +++|+++|++||+++|.||+++-...|..  +..+.+++  .||++ 
T Consensus       190 e~~~~~~-~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~--~~~~~~gi--~PDi~-  263 (427)
T d2gsaa_         190 KALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYG--GVQEKFGV--TPDLT-  263 (427)
T ss_dssp             HHHHTTS-TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTT--CHHHHTTC--CCSEE-
T ss_pred             HHHHHhC-CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceeccc--chHHhcCC--CHHHH-
Confidence            9999864 345889999999999999887    99999999999999999999982233322  23445555  89999 


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCc-eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAG-FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                       +++|.+|+ |   |++++++++.+.+...... ...+++.+++.++++.++|+.+.++.   ..++++++.+++.+.|+
T Consensus       264 -~~gK~lgg-G~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~---l~~~~~~~g~~l~~~L~  338 (427)
T d2gsaa_         264 -TLGKIIGG-GLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGLL  338 (427)
T ss_dssp             -EECGGGGT-TSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHH
T ss_pred             -hhhhccCC-CcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhh---HHhhhhHHHHHHHHHHH
Confidence             89999976 4   7888999988877653322 22355889999999999999997766   56677777777777765


Q ss_pred             hC----CCccc-cCCCcEEEEEeCCC-------------ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCC
Q psy16848        401 QI----GFPVE-HTPSHIIPIKIGNP-------------ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFH  462 (514)
Q Consensus       401 ~~----g~~~~-~~~~~~~~i~l~~~-------------~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~  462 (514)
                      ++    ++... ...+.++.+.+...             .....+...++ ++||++.|+.+      .   ++.++..+
T Consensus       339 ~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll-~~Gv~l~p~~~------~---~~~~~l~~  408 (427)
T d2gsaa_         339 AIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQF------E---AGFTSLAH  408 (427)
T ss_dssp             HHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT------S---CEECCTTC
T ss_pred             HHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHH-HCCEEECCCCC------c---ceeCCCCC
Confidence            54    44332 22344666554211             11245667786 89999876432      1   12256779


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q psy16848        463 TREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       463 t~e~id~~~~~l~~~l~~~  481 (514)
                      |++|+|+++++++++++++
T Consensus       409 Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         409 TEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             CHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHHHhC
Confidence            9999999999999998753

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=5e-25  Score=217.57  Aligned_cols=310  Identities=14%  Similarity=0.102  Sum_probs=222.0

Q ss_pred             hcCCceeeeccc--CCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcEEEEeccccc
Q psy16848         14 HKSNRVTCRLSS--VQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAGLVFTSCYVA   87 (514)
Q Consensus        14 ~~~g~~~~d~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~i~~~sGt~a   87 (514)
                      +.+++..|+++-  +.|..++.+++++.+.+.....+   .....|    ..++++.++++++.    ++.|++++|++.
T Consensus        15 ~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~---~yp~~g----~~~Lr~aia~~~~~~~v~~d~I~it~G~~~   87 (334)
T d2f8ja1          15 ETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALR---IYYDSP----DEELIEKILSYLDTDFLSKNNVSVGNGADE   87 (334)
T ss_dssp             CCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGG---SCCCSS----CHHHHHHHHHHHTCSSCCGGGEEEEEHHHH
T ss_pred             cccCCCceEEECCCCCCCCCHHHHHHHHHHhhcchhc---CCCCCC----cHHHHHHHHHHhcccCCCcceEEecCcchh
Confidence            346677787743  44545678888887777542111   111123    24677777777653    334777777664


Q ss_pred             cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchh
Q psy16848         88 NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLK  167 (514)
Q Consensus        88 ~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
                         ++..+.+  ++|.|++..++|......++..|++++.++-++                                   
T Consensus        88 ---~l~~l~~--~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~-----------------------------------  127 (334)
T d2f8ja1          88 ---IIYVMML--MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK-----------------------------------  127 (334)
T ss_dssp             ---HHHHHHH--HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCT-----------------------------------
T ss_pred             ---HHHHHhh--hccccccccccccccccchhccCCccccccccc-----------------------------------
Confidence               2333444  789999999999998888777777777654321                                   


Q ss_pred             HHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        168 ELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                                                                                  +.. 
T Consensus       128 ----------------------------------------------------------------------------~~~-  130 (334)
T d2f8ja1         128 ----------------------------------------------------------------------------DLR-  130 (334)
T ss_dssp             ----------------------------------------------------------------------------TSC-
T ss_pred             ----------------------------------------------------------------------------ccc-
Confidence                                                                                        000 


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                          ..+...++++++++++|+||||.+++.++|.++ .++++++|+||+|........   ....  ...+..+++.|+
T Consensus       131 ----~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~---~~~~--~~~~~~i~~~S~  200 (334)
T d2f8ja1         131 ----IPEVNVGEGDVVFIPNPNNPTGHVFEREEIERI-LKTGAFVALDEAYYEFHGESY---VDFL--KKYENLAVIRTF  200 (334)
T ss_dssp             ----CCCCCCCTTEEEEEESSCTTTCCCCCHHHHHHH-HTTTCEEEEECTTGGGTCCCC---GGGG--GTCSSEEEEEES
T ss_pred             ----ccccccccceEEEecccccccceeecHHHhhcc-ccceeEEeecccchhhccccc---cccc--ccCceEEEEecC
Confidence                001234568999999999999999998888775 458999999999973322111   1111  134678999999


Q ss_pred             cccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        328 GKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       328 sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      ||.++.+|   ||+++++++++.+......+    ..+...+.++.+.++.  .++.++.++.++++++++.+.|+++|+
T Consensus       201 SK~~~~~G~R~G~~~~~~~~i~~l~~~~~~~----~~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~  274 (334)
T d2f8ja1         201 SKAFSLAAQRVGYVVASEKFIDAYNRVRLPF----NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGY  274 (334)
T ss_dssp             TTTSSCTTTCEEEEEECHHHHHHHHHHSCTT----CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhcccchHHHHHHHHhhccc----ccchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence            99998778   99999999999998776443    5567777777776653  456677888999999999999999999


Q ss_pred             ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q psy16848        405 PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLA  476 (514)
Q Consensus       405 ~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~  476 (514)
                      ++.++.++++++.++. .+..++.+.|+ ++||.+++.        ++++|++++   +.+|+++++++|++
T Consensus       275 ~~~~~~g~f~~~~~~~-~~~~~~~~~L~-~~GI~vr~~--------~~~vRis~g---~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         275 RITDSRGNFVFVFMEK-EEKERLLEHLR-TKNVAVRSF--------REGVRITIG---KREENDMILRELEV  333 (334)
T ss_dssp             EECCCCSSEEEEECCH-HHHHHHHHHHH-HTTEECEEE--------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred             eECCCCceEEEEECCC-CCHHHHHHHHH-HCCCEECCC--------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence            9888888888887765 36788999995 899998743        358999997   78899999999875

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.2e-25  Score=221.70  Aligned_cols=340  Identities=17%  Similarity=0.117  Sum_probs=217.4

Q ss_pred             eeecccCCCCCChhHHHHHHHHHHHhC---CCCCCc-CcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchh
Q psy16848         20 TCRLSSVQYKVPKGGRKCLGEALEKFG---TGAGGT-RNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLF   93 (514)
Q Consensus        20 ~~d~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~   93 (514)
                      |.|.++.. ..+|.+.+++.+.+....   ..++.. .......+..+++++.+++++|.+  +.++++|+|+++..++.
T Consensus         5 YlD~aa~~-p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~   83 (391)
T d1p3wa_           5 YLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIK   83 (391)
T ss_dssp             ECBTTTCC-CCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             EeeCcccc-CCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHh
Confidence            45554432 336889988888766422   111111 111112456778899999999976  45556666777766666


Q ss_pred             hccc--cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         94 TLGK--MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        94 ~l~~--~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      ++..  .++||+|++.+.+|.++...++.                                                   
T Consensus        84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~---------------------------------------------------  112 (391)
T d1p3wa_          84 GAANFYQKKGKHIITSKTEHKAVLDTCRQ---------------------------------------------------  112 (391)
T ss_dssp             HHHHHHGGGCCEEEEETTSCHHHHHHHHH---------------------------------------------------
T ss_pred             hhhhhhcCCCCEEEEeccccchHHHHHHH---------------------------------------------------
Confidence            5431  35999999999999998643321                                                   


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCC-ChhHHHH
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHN-DVNHLTQ  250 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~  250 (514)
                                                                                +...|+++..++.+ +...+.+
T Consensus       113 ----------------------------------------------------------~~~~G~~v~~v~~~~~~~~d~~  134 (391)
T d1p3wa_         113 ----------------------------------------------------------LEREGFEVTYLAPQRNGIIDLK  134 (391)
T ss_dssp             ----------------------------------------------------------HHHTTCEEEEECCCTTSCCCHH
T ss_pred             ----------------------------------------------------------HHHcCCEEEEeCCCCCCeEcHH
Confidence                                                                      12234444444421 1122234


Q ss_pred             HHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+.+..+++|++|++++++|+||.+.|+++|.++|+++|+++++|++|+.|..        +.+....+.|+++.|++|+
T Consensus       135 ~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~--------~~d~~~~~~D~~~~s~~k~  206 (391)
T d1p3wa_         135 ELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL--------PIDLSQLKVDLMSFSGHKI  206 (391)
T ss_dssp             HHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTB--------CCCTTTSCCSEEEEESTTT
T ss_pred             HHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCc--------cccchhccccccccccccc
Confidence            44555577899999999999999999999999999999999999999997764        2222244789999999999


Q ss_pred             ccCCC-eEEEecHHHHHHHHhhcCceE-----eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        331 FGNIG-GYIVGTKNFIDTIRSYAAGFI-----FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       331 lg~~G-G~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      +|+.| |+++.+++......+...++.     .....+.....++...++... +...+..++++++.+++.+.|.+.+.
T Consensus       207 ~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~  285 (391)
T d1p3wa_         207 YGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEE  285 (391)
T ss_dssp             TSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTTSTT
T ss_pred             cCCCceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHH-HHhhHHHHHHHHHHHHHHHHHHhhcC
Confidence            99877 888887765554443322211     011233333334334444332 33445567777888888888877632


Q ss_pred             -cccc--C--CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCC----------------CcEEEEEeCCCCC
Q psy16848        405 -PVEH--T--PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVG----------------EEKIRLAPTPFHT  463 (514)
Q Consensus       405 -~~~~--~--~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~----------------~~~iRl~~~~~~t  463 (514)
                       .+..  .  ...++.+.++. .....+...|   +++.++.+..|.....                .+.+|+|++.++|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt  361 (391)
T d1p3wa_         286 VYLNGDLEHGAPNILNVSFNY-VEGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT  361 (391)
T ss_dssp             EEECSCTTTSCTTEEEEEETT-SCHHHHHHHT---TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred             eeecccccccCceEEEEEeCC-CChHHHHHHh---CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCC
Confidence             2211  1  22355566554 3455665555   4677766654432211                2479999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q psy16848        464 REMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       464 ~e~id~~~~~l~~~l~~~~  482 (514)
                      ++|+|+++++|++++++++
T Consensus       362 ~edid~l~~~l~~~l~~lr  380 (391)
T d1p3wa_         362 EEEIDYTIELVRKSIGRLR  380 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998875

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=2.8e-25  Score=227.96  Aligned_cols=216  Identities=19%  Similarity=0.258  Sum_probs=160.1

Q ss_pred             hhHHHHHHhhc--cCCCceEEEEecCCCCCccccC----HHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCc
Q psy16848        245 VNHLTQVLENM--DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQL  317 (514)
Q Consensus       245 ~~~l~~~l~~~--~~~~~~~vv~~~~~nptG~~~~----l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~  317 (514)
                      ++.+++.+...  ..+++++|++|++++..|...+    +++|+++|++||++||.||+++ +|+.|..+  ..+.+++.
T Consensus       232 ~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~--~~e~~gi~  309 (461)
T d1ohwa_         232 LEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFW--AHEHWGLD  309 (461)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSS--GGGGGCCS
T ss_pred             HHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccc--cccccccc
Confidence            34444444432  3456899999999999898766    8999999999999999999998 66666432  23445544


Q ss_pred             cCceEEEcCCcccccCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        318 HNMDIISGTLGKAFGNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       318 ~~~di~~~S~sK~lg~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      ..+|++  +++|.+++ |+ +.....+.. ....  ....+++.+++.++++.++|+.+.++.   +.++.+++.+++.+
T Consensus       310 ~~PDiv--~~gK~l~~-g~-~~~~~~~~~-~~~~--~~~~T~~g~p~~~aaa~a~l~~i~~~~---l~~~~~~~g~~l~~  379 (461)
T d1ohwa_         310 DPADVM--TFSKKMMT-GG-FFHKEEFRP-NAPY--RIFNTWLGDPSKNLLLAEVINIIKRED---LLSNAAHAGKVLLT  379 (461)
T ss_dssp             SCCSEE--EECGGGSS-EE-EEECGGGSC-SSTT--SSCCSCSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred             cCchhh--hhhhcccc-cc-ccccccccc-cccc--ccccccccccccchhhcccchhhhhhh---HHHHHHHHHHHHHH
Confidence            469999  99999986 43 333332211 1111  222355789999999999999997665   67777788888888


Q ss_pred             HHHhC--CC----ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q psy16848        398 ELIQI--GF----PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFV  471 (514)
Q Consensus       398 ~L~~~--g~----~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~  471 (514)
                      .|+++  ..    .-+...|.++.+++++.....+++..++ ++|+.+.+.       +++.||+.+++.+|++|+++++
T Consensus       380 ~l~~l~~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~i~~~~~-~~Gll~~~~-------~~~~ir~~PpL~it~~eid~~~  451 (461)
T d1ohwa_         380 GLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIAR-NKGVMLGGC-------GDKSIRFRPTLVFRDHHAHLFL  451 (461)
T ss_dssp             HHHHHHHHCTTTCEEEEEETTEEEEECSSHHHHHHHHHHHH-HTTEECEEE-------TTTEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHHHhhCCCceEEeeeeeEEEEEEcCCHHHHHHHHHHHH-HCCeEEeeC-------CCCEEEEeCCcCCCHHHHHHHH
Confidence            77765  22    1234467788999988777788999996 899998642       3468999999999999999999


Q ss_pred             HHHHHHHHH
Q psy16848        472 TDLLAVWKS  480 (514)
Q Consensus       472 ~~l~~~l~~  480 (514)
                      ++|++++.+
T Consensus       452 ~~l~~~l~e  460 (461)
T d1ohwa_         452 NIFSDILAD  460 (461)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999876

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2e-23  Score=207.72  Aligned_cols=282  Identities=16%  Similarity=0.075  Sum_probs=195.9

Q ss_pred             HHHHHHHHhHcCCC--cEEEEeccccccccchhhccccCCCc-eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHH
Q psy16848         63 EKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGKMIPGL-HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQV  139 (514)
Q Consensus        63 ~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~~~~gd-~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~  139 (514)
                      .++++++++++|.+  ..++++++++++..++.++..  ||| .|++++++|......++..|.+++.++..        
T Consensus        59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~--pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~--------  128 (354)
T d1fg7a_          59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--------  128 (354)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--------
T ss_pred             HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc--cccccccccccccccchhhhhccCceeeccccc--------
Confidence            58899999999854  445445556678888888876  998 58889999988877777777666544321        


Q ss_pred             HHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCc
Q psy16848        140 LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPE  219 (514)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~  219 (514)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (354)
T d1fg7a_         129 --------------------------------------------------------------------------------  128 (354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHH--HHcCCEEEEecc
Q psy16848        220 VAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS--HQHGALTFVDEV  297 (514)
Q Consensus       220 v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~--~~~gv~li~Dea  297 (514)
                                             +++..+.+.+.+.. ++++++++++|+||||.+++.+++..++  .+++.++|+||+
T Consensus       129 -----------------------~~~~~d~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~  184 (354)
T d1fg7a_         129 -----------------------DNWQLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEA  184 (354)
T ss_dssp             -----------------------TTSCCCHHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECT
T ss_pred             -----------------------cccccchhhhhhcc-cccceeeccCCCccceeEeeeccccccccccccccccccccc
Confidence                                   12222223333332 4689999999999999999943333332  336888888888


Q ss_pred             ccccccCCCCCCccccCCCccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        298 HAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       298 ~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      |.........   ..... ..+..+++.||||.+|.+|   ||+++++++++.+.+....+    ..+...+.++.+++.
T Consensus       185 ~~~f~~~~~~---~~~~~-~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~----~~~~~~~~~a~~~~~  256 (354)
T d1fg7a_         185 YIEFCPQASL---AGWLA-EYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY----PLSTPVADIAAQALS  256 (354)
T ss_dssp             TGGGSGGGCS---GGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS----CSCHHHHHHHHHHTS
T ss_pred             chhhcccccc---chhhc-ccccceEEeCCccccCCCccccccccccchhhhhhhhhcCcc----chhhHHHHHHHHHHh
Confidence            8743221111   11111 3467788999999999778   99999999999998776554    445555554444443


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhCCC--ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQIGF--PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                      ...........+++.+.++++.+.+.+++.  .+.++.++++++++++   ..++++.|+ ++||.++++..+.  ..++
T Consensus       257 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~---~~~~~~~L~-~~gIlvr~~~~~~--~~~~  330 (354)
T d1fg7a_         257 PQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKA---SSAVFKSLW-DQGIILRDQNKQP--SLSG  330 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETT---HHHHHHHHH-HTTEECEECTTST--TCTT
T ss_pred             hhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCC---HHHHHHHHH-HCCcEEecCCCCC--CCCC
Confidence            222234445667778888899999998853  2345567788888874   678889996 8999999876432  2357


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLL  475 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~  475 (514)
                      ++|++++   |++|+++++++|+
T Consensus       331 ~lRisig---t~ee~~~~l~aLk  350 (354)
T d1fg7a_         331 CLRITVG---TREESQRVIDALR  350 (354)
T ss_dssp             EEEEECC---CHHHHHHHHHHHH
T ss_pred             EEEEEeC---CHHHHHHHHHHHh
Confidence            9999997   8999999998886

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1e-22  Score=204.08  Aligned_cols=339  Identities=17%  Similarity=0.123  Sum_probs=218.1

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHHHhCCCCCC-cCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGG-TRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l   95 (514)
                      .|.|.++... .++.+.+++.+.++..-.+.++ +.......+..++.++++++++|.+  +.++++|+|+++..++..+
T Consensus         3 iyld~a~~~~-~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~   81 (376)
T d1eg5a_           3 VYFDNNATTR-VDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV   81 (376)
T ss_dssp             EECBTTTCCC-CCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred             EEEECccccc-CCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcc
Confidence            3555544333 2578999999988853222211 1111123456678889999999975  4576777778866666543


Q ss_pred             c--ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         96 G--KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        96 ~--~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      .  ...+|+.|++....|.+.....                                                       
T Consensus        82 ~~~~~~~g~~v~~~~~~~~~~~~~~-------------------------------------------------------  106 (376)
T d1eg5a_          82 AETFEKRKRTIITTPIEHKAVLETM-------------------------------------------------------  106 (376)
T ss_dssp             HHHTTTTCCEEEECTTSCHHHHHHH-------------------------------------------------------
T ss_pred             cccccccCcccccccccchhhHHHH-------------------------------------------------------
Confidence            2  2458888888888877765222                                                       


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCChhHHHHHH
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVL  252 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l  252 (514)
                                                                            ..+...|++++.+| ..+...+.+.+
T Consensus       107 ------------------------------------------------------~~~~~~g~~v~~vp~~~~~~id~~~l  132 (376)
T d1eg5a_         107 ------------------------------------------------------KYLSMKGFKVKYVPVDSRGVVKLEEL  132 (376)
T ss_dssp             ------------------------------------------------------HHHHHTTCEEEECCBCTTSCBCHHHH
T ss_pred             ------------------------------------------------------HHHHhcCCEEEEEcCCCCCeECHHHH
Confidence                                                                  22233455565555 22333344556


Q ss_pred             hhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCccc
Q psy16848        253 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKA  330 (514)
Q Consensus       253 ~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~  330 (514)
                      .+..+++|+++++++++|+||...+++++.++++.+  ++++++|++|+.|..        +.+-...++|++++|++|+
T Consensus       133 ~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~--------~~d~~~~~~D~~~~s~~K~  204 (376)
T d1eg5a_         133 EKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI--------PFSLEKLEVDYASFSAHKF  204 (376)
T ss_dssp             HHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS--------CCCCTTTCCSEEEEEGGGG
T ss_pred             HHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccc--------cccccccCccceeccccee
Confidence            666678899999999999999999999999999776  999999999997765        2221234789999999999


Q ss_pred             ccCCC-eEEEecHHHHHHHHhhcCceE-----eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        331 FGNIG-GYIVGTKNFIDTIRSYAAGFI-----FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       331 lg~~G-G~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      +|+.| |+++.+++..  +++...++.     .....+.............. ................++.+.|.....
T Consensus       205 ~gp~G~~~l~~~~~~~--~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  281 (376)
T d1eg5a_         205 HGPKGVGITYIRKGVP--IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLGA  281 (376)
T ss_dssp             TSCTTCEEEEECTTSC--CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ecCCCceeEEeccCcc--cCCcccCCCCcccccCCcccchhhhhHHHHhhcc-ccchhhhhhhhhhhhhhhccccccccc
Confidence            99888 7777765521  222221110     01123444444444444433 233445566666777778888877633


Q ss_pred             ccccC----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC----------------CCcEEEEEeCCCCCH
Q psy16848        405 PVEHT----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV----------------GEEKIRLAPTPFHTR  464 (514)
Q Consensus       405 ~~~~~----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~----------------~~~~iRl~~~~~~t~  464 (514)
                      .....    ....+.+.++. .....+...| +++||.++.|..|..+.                ..+.+|+|++.++|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~  359 (376)
T d1eg5a_         282 HIITPLEISLPNTLSVSFPN-IRGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE  359 (376)
T ss_dssp             EECSCTTSBCTTEEEEECTT-CCHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred             cccccccccccceeeeccCC-CCHHHHHHHH-hhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCH
Confidence            32221    23356666654 4567777777 69999998877654221                124799999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy16848        465 EMIDKFVTDLLAVWKS  480 (514)
Q Consensus       465 e~id~~~~~l~~~l~~  480 (514)
                      +|||+++++|++++.-
T Consensus       360 edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         360 EEVDYFLKKIEEILSF  375 (376)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998763

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.2e-23  Score=208.69  Aligned_cols=302  Identities=18%  Similarity=0.202  Sum_probs=221.3

Q ss_pred             chHHHHHHHHHHhHcCCCc--EEEE-eccccccccchhhccccCCCceEEecCccchhhhhhh--hcCCCCeeeccCCCh
Q psy16848         59 SLFHEKLEEDVAKLHQKEA--GLVF-TSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGI--RNSSAPKIIYRHNDV  133 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~--~i~~-~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~--~~~~~~~~~~~~~d~  133 (514)
                      .++++++++.+++++|.+.  .+++ .|||+++.+++..+..  +|+.+++....|.+.....  ...+..+..+...+ 
T Consensus        51 ~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  127 (388)
T d1h0ca_          51 YQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLE--PGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDP-  127 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC--SSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCT-
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhc--cCCceeeecccceeeeeccccccccccccccccCC-
Confidence            5788999999999999753  4545 5689999999988876  9999998888887764221  11111111111000 


Q ss_pred             HHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHh
Q psy16848        134 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  213 (514)
Q Consensus       134 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~  213 (514)
                                                                                   +.                 
T Consensus       128 -------------------------------------------------------------~~-----------------  129 (388)
T d1h0ca_         128 -------------------------------------------------------------GG-----------------  129 (388)
T ss_dssp             -------------------------------------------------------------TC-----------------
T ss_pred             -------------------------------------------------------------cc-----------------
Confidence                                                                         00                 


Q ss_pred             hccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEE
Q psy16848        214 TLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTF  293 (514)
Q Consensus       214 ~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li  293 (514)
                                                  ..+....++.+..   .+++++.+.+.+|.+|.+.|+++|.++|+++|++++
T Consensus       130 ----------------------------~~~~~~~~~~~~~---~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~  178 (388)
T d1h0ca_         130 ----------------------------HYTLQEVEEGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLL  178 (388)
T ss_dssp             ----------------------------CCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEE
T ss_pred             ----------------------------ccchHHHHHHhcc---CCcceEEEeeeeeccccccCHHHHHHHhhcccccce
Confidence                                        1134444444443   347899999999999999999999999999999999


Q ss_pred             EeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEecHHHHHHHHhhcCc-----------------
Q psy16848        294 VDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVGTKNFIDTIRSYAAG-----------------  354 (514)
Q Consensus       294 ~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~~~~~~~~l~~~~~~-----------------  354 (514)
                      +|++++.|..        +.+....+.|++++|.+|++++ .| |+++.++..++.+......                 
T Consensus       179 vD~~qs~g~~--------~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (388)
T d1h0ca_         179 VDSVASLGGT--------PLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGC  250 (388)
T ss_dssp             EECTTTTTTS--------CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTC
T ss_pred             eccccccccc--------cccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhh
Confidence            9999997764        2222245889999999999965 44 8888888888776532211                 


Q ss_pred             ----eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccC----C-CcEEEEEeCCCccHH
Q psy16848        355 ----FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHT----P-SHIIPIKIGNPALNT  425 (514)
Q Consensus       355 ----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~-~~~~~i~l~~~~~~~  425 (514)
                          ..+..+.+.....+..++++.+.+.+++.+.++..++.+++.+.+...++....+    . ..++.+.++++.+..
T Consensus       251 ~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~~  330 (388)
T d1h0ca_         251 DDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWR  330 (388)
T ss_dssp             SSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCHH
Confidence                0112345666777888888887777788899999999999999998886554322    1 236788888877889


Q ss_pred             HHHHHHHHhCCeEEecccCCCCCCCCcEEEEE-eCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        426 KICDMLLKEKGHYVQPINYPTVPVGEEKIRLA-PTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       426 ~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~-~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      ++.+.|++++||.+..|..+.   ..+.+|++ ++.++|.||||+++++|+++++++++
T Consensus       331 ~~~~~L~~~~gI~v~~G~~~~---~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k  386 (388)
T d1h0ca_         331 DIVSYVIDHFDIEIMGGLGPS---TGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK  386 (388)
T ss_dssp             HHHHHHHHHHCEECEECCGGG---TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhcCCEEEeCCchhh---cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999766799998776532   24689999 67778999999999999999999875

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.3e-23  Score=203.53  Aligned_cols=327  Identities=18%  Similarity=0.228  Sum_probs=206.4

Q ss_pred             eeecccCC-CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcccc
Q psy16848         20 TCRLSSVQ-YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKM   98 (514)
Q Consensus        20 ~~d~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~   98 (514)
                      +|||.+.. -..+|++.+|+.++.      .+  ...||..+...+||+++++++|.+++++++|||+|++.++.++.. 
T Consensus         1 ~~~~~~~~~t~p~p~v~~A~~~a~------~g--~~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~-   71 (343)
T d1m6sa_           1 MIDLRSDTVTKPTEEMRKAMAQAE------VG--DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ-   71 (343)
T ss_dssp             CEECSCGGGCCCCHHHHHHHHTCC------CC--CGGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCC-
T ss_pred             CcccccccCCCCCHHHHHHHHhhh------cC--CcccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhc-
Confidence            47785433 234799888876531      11  123556688999999999999999999999999999999999987 


Q ss_pred             CCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCc
Q psy16848         99 IPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  178 (514)
Q Consensus        99 ~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (514)
                       +||.+++....|.+..............                                                   
T Consensus        72 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------   99 (343)
T d1m6sa_          72 -RGDEVILEADSHIFWYEVGAMAVLSGVM---------------------------------------------------   99 (343)
T ss_dssp             -TTCEEEEETTCHHHHSSTTHHHHHTCCE---------------------------------------------------
T ss_pred             -cCCceeccccccceeeecccccccccce---------------------------------------------------
Confidence             9999999999998775443222111110                                                   


Q ss_pred             eEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec----CCChhHHHHHHhh
Q psy16848        179 LTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR----HNDVNHLTQVLEN  254 (514)
Q Consensus       179 ~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~----~~d~~~l~~~l~~  254 (514)
                                                                                .+.++    ..+.+..++.+..
T Consensus       100 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~i~~  121 (343)
T d1m6sa_         100 ----------------------------------------------------------PHPVPGKNGAMDPDDVRKAIRP  121 (343)
T ss_dssp             ----------------------------------------------------------EEEECEETTEECHHHHHHHSCC
T ss_pred             ----------------------------------------------------------eeccccccCccCHHHHHHhhhh
Confidence                                                                      11111    1133444444433


Q ss_pred             ccC--CCceEE-EEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc
Q psy16848        255 MDV--KIPKLV-AFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG  328 (514)
Q Consensus       255 ~~~--~~~~~v-v~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s  328 (514)
                      ...  .++..+ +...++|++|.+.+   +++|.++|+++|+++++|+++..+..+.........   ....+..+.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  198 (343)
T d1m6sa_         122 RNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY---AGYADSVMFCLS  198 (343)
T ss_dssp             SCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHH---HHTCSEEEEESS
T ss_pred             hhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhh---cccccccccccc
Confidence            211  234444 44556677777777   678888889999999999999854432211111111   112344444555


Q ss_pred             ccccC-CCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-Cc-
Q psy16848        329 KAFGN-IGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-FP-  405 (514)
Q Consensus       329 K~lg~-~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-  405 (514)
                      |..++ .+|++....+.+............+...+....++........ ..    ..+...++..++.+.+.+++ .. 
T Consensus       199 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~  273 (343)
T d1m6sa_         199 KGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM-VD----RLKEDHENARFLALKLKEIGYSVN  273 (343)
T ss_dssp             STTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS-ST----THHHHHHHHHHHHHHHHHHTCBCC
T ss_pred             ccccccccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhh-HH----HHHHHHHHHHHhhhHHHHhccCcc
Confidence            55543 3477788888776666554433223333333333333222222 22    23334455555555555542 22 


Q ss_pred             cccCCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        406 VEHTPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       406 ~~~~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      ..+..++++.+.+++ ...+.++++.|+ ++||.+.+..       ++.+|++++..+|+||||+++++|+++++++
T Consensus       274 ~~~~~~~~v~~~~~~~~~~a~~l~~~L~-~~Gi~v~~~~-------~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         274 PEDVKTNMVILRTDNLKVNAHGFIEALR-NSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             GGGCCSSEEEEECTTSSSCHHHHHHHHH-HHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEEeCCCcccHHHHHHHHH-HCCCEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            223456678887764 356789999995 9999987643       4589999999999999999999999999885

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.90  E-value=4.7e-23  Score=208.47  Aligned_cols=333  Identities=14%  Similarity=0.025  Sum_probs=214.8

Q ss_pred             eeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcC---CCcEEEEecccc--
Q psy16848         19 VTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQ---KEAGLVFTSCYV--   86 (514)
Q Consensus        19 ~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~i~~~sGt~--   86 (514)
                      ..||++-+.|.+       .|.|+++..+.+.+..  ..++....|..++.+++.+++.+..+   .+..++++.|+.  
T Consensus        29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~  106 (401)
T d7aata_          29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM--DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGT  106 (401)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred             CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCC--CCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHH
Confidence            468887555442       3567777666666522  12344556777777777766666544   233344433322  


Q ss_pred             ----ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCC
Q psy16848         87 ----ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  162 (514)
Q Consensus        87 ----a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  162 (514)
                          ++..++.++..  |||.|+++++.|......++.+|++++.++-.+.+                            
T Consensus       107 g~~~~~~~~~~~l~~--pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~----------------------------  156 (401)
T d7aata_         107 GSLRVGANFLQRFFK--FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPK----------------------------  156 (401)
T ss_dssp             HHHHHHHHHHHHHCT--TCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETT----------------------------
T ss_pred             HHHHHHHHhhHhhcC--CCceEEEecCCCcchhhHHHHcCCeEEEEeccccc----------------------------
Confidence                23444455555  99999999999999988888888877765431000                            


Q ss_pred             ccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecC
Q psy16848        163 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~  242 (514)
                                                      +.                                             .
T Consensus       157 --------------------------------~~---------------------------------------------~  159 (401)
T d7aata_         157 --------------------------------TC---------------------------------------------S  159 (401)
T ss_dssp             --------------------------------TT---------------------------------------------E
T ss_pred             --------------------------------cc---------------------------------------------c
Confidence                                            00                                             0


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCC-CCcc--ccCCC
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG-AGIG--ERDGQ  316 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~-~~~~--~~~~~  316 (514)
                      .+++.+.+.+... +++++++++++||||||.+++   +++|.++|++|++++|+||+|....++... ....  .... 
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-  237 (401)
T d7aata_         160 LDFTGAMEDISKI-PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE-  237 (401)
T ss_dssp             ECHHHHHHHHTTS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-
T ss_pred             ccHHHHHHHHhcC-CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhh-
Confidence            1344444444432 466899999999999999999   799999999999999999999954433210 0000  0001 


Q ss_pred             ccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCceE-----eccCCcHHHHHHHHHHHHHh-----hhchHHH
Q psy16848        317 LHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFI-----FTTSLPPTVLAGAREAIRIL-----SSQEGVE  383 (514)
Q Consensus       317 ~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~-----~~~~~~~  383 (514)
                      .....+++.|++|.++.+|   ||++++.+.++..........     .....+...+.++...+..-     .....++
T Consensus       238 ~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  317 (401)
T d7aata_         238 QGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKG  317 (401)
T ss_dssp             TTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            1234577789999998878   999988776665543321110     01244555555555554311     1234567


Q ss_pred             HHHHHHHHHHHHHHHHHhCCC----ccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        384 LRAKHQDIVAYLRNELIQIGF----PVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       384 ~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      .+++++++++.+.+.|++++.    .+..+.++|| ++.+     ..+++++|++++||++.|+           +|+++
T Consensus       318 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-----s~e~~~~L~~e~gV~~~pg-----------~Ris~  381 (401)
T d7aata_         318 MADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL-----KPEQVERLTKEFSIYMTKD-----------GRISV  381 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCTT-----------CEEEG
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCC-----CHHHHHHHHHhCCEEECCC-----------cEEEe
Confidence            788889999999999999853    3445555544 4332     2467888888899998754           49998


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q psy16848        459 TPFHTREMIDKFVTDLLAVWK  479 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l~  479 (514)
                      + ..++++|++++++|.++++
T Consensus       382 a-~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         382 A-GVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             G-GCCTTTHHHHHHHHHHHHC
T ss_pred             c-cCCHHHHHHHHHHHHHHhC
Confidence            7 4678889999999998763

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=4.8e-23  Score=205.63  Aligned_cols=324  Identities=16%  Similarity=0.118  Sum_probs=203.3

Q ss_pred             CCce-eeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEeccccccccc
Q psy16848         16 SNRV-TCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVANDST   91 (514)
Q Consensus        16 ~g~~-~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~~~~   91 (514)
                      .|+. .+|+.+  ..+++.+.+...+.++++.          +.....+++++..++.++.   +.++++++|++|+..+
T Consensus        17 ~g~~~i~~~~g--l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~   84 (366)
T d2aeua1          17 KGRDALYDLSG--LSGGFLIDEKDKALLNTYI----------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT   84 (366)
T ss_dssp             TCGGGCEECSS--CCCCCCCCHHHHHHHTSTT----------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             hccchHhhhcc--CCCCCCccHHHHHHHHHhc----------CchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHH
Confidence            4443 456633  1235566666666665532          1124556777777777753   3467788899999999


Q ss_pred             hhhccccCCCceEEec-CccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHh
Q psy16848         92 LFTLGKMIPGLHYISD-AGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELC  170 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~-~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
                      +.++..  ++|.++++ .+.|.++..++++.|++++  +++|.+++                                  
T Consensus        85 l~al~~--~~~vi~~~~~~~~~~~~~~~~l~g~~~v--~~~d~e~l----------------------------------  126 (366)
T d2aeua1          85 ILALKP--KKVIHYLPELPGHPSIERSCKIVNAKYF--ESDKVGEI----------------------------------  126 (366)
T ss_dssp             HHHHCC--SEEEEECSSSSCCTHHHHHHHHTTCEEE--EESCHHHH----------------------------------
T ss_pred             HHHhCC--CCEEEEecCCCcchhHHHHHHhcCCeEE--CCCCHHHH----------------------------------
Confidence            988763  45545554 5789999988888887653  22233333                                  


Q ss_pred             hhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHH
Q psy16848        171 EVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQ  250 (514)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  250 (514)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (366)
T d2aeua1         127 --------------------------------------------------------------------------------  126 (366)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCCceEEEEecCCCCCc-cccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcc
Q psy16848        251 VLENMDVKIPKLVAFETVHSMTG-AICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGK  329 (514)
Q Consensus       251 ~l~~~~~~~~~~vv~~~~~nptG-~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK  329 (514)
                        ++..+++|++|++++++||++ ...++++|+++|++||+++++||+|+.+.++..+.+..    ...+.|++++|+||
T Consensus       127 --~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~----~~~~~di~~~S~sK  200 (366)
T d2aeua1         127 --LNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA----LKLGADLVVTSTDK  200 (366)
T ss_dssp             --HTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH----HHHTCSEEEEETTS
T ss_pred             --HHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCH----hhcCceEEEecccc
Confidence              333456799999999988754 45669999999999999999999998655432221111    13468999999999


Q ss_pred             cccCCC-eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh----C-C
Q psy16848        330 AFGNIG-GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQ----I-G  403 (514)
Q Consensus       330 ~lg~~G-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~-g  403 (514)
                      .+++.+ ||+++++++++.++.....+  +.+.++..+.++..+|+.+.-..+++..++.++....+.+.+..    . +
T Consensus       201 ~~~g~~~G~i~~~~~~i~~~~~~~~~~--g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~  278 (366)
T d2aeua1         201 LMEGPRGGLLAGKKELVDKIYIEGTKF--GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDD  278 (366)
T ss_dssp             SSSSCSCEEEEEEHHHHHHHHHHHHTT--TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCT
T ss_pred             cccccceeEEEecHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            997644 99999999999998766554  44667788888888887542222222222222222223332222    1 1


Q ss_pred             Cccc---cCCCcEEEEEeCCC-----ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHH-HHHHHHHHH
Q psy16848        404 FPVE---HTPSHIIPIKIGNP-----ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTRE-MIDKFVTDL  474 (514)
Q Consensus       404 ~~~~---~~~~~~~~i~l~~~-----~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e-~id~~~~~l  474 (514)
                      +...   .....++.......     .+..+++.+|+++.||.+.|+..+  +.+++.+|++++...+++ +.+.+++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~--p~~~~~lRis~~~~~~~~i~~d~l~~ai  356 (366)
T d2aeua1         279 NINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM--PGASKSLRIDLTSRDAERIDDNYIIKAI  356 (366)
T ss_dssp             TEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS--CSSCCSEEEETTSGGGGGSCHHHHHHHH
T ss_pred             ccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCC--CCCCCEEEEeccccchhhCCHHHHHHHH
Confidence            1111   11222333332221     235678888988889999887642  456789999998544333 355666666


Q ss_pred             HHHHH
Q psy16848        475 LAVWK  479 (514)
Q Consensus       475 ~~~l~  479 (514)
                      .+.++
T Consensus       357 ~~~lK  361 (366)
T d2aeua1         357 VESIK  361 (366)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.89  E-value=6.1e-22  Score=200.91  Aligned_cols=222  Identities=15%  Similarity=0.100  Sum_probs=146.9

Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCC-CCCccc-cCCCcc
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEH-GAGIGE-RDGQLH  318 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~-~~~~~~-~~~~~~  318 (514)
                      |++..++.+.+. .++++++++++||||||.+++   +++|+++|++|++++|+||+|....++.. ...+.. ......
T Consensus       169 d~~~~~~~~~~~-~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~  247 (412)
T d1ajsa_         169 DLQGFLSDLENA-PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEG  247 (412)
T ss_dssp             CHHHHHHHHHHS-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred             cHHHHHHHHHhc-cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhc
Confidence            445555555443 466899999999999999999   89999999999999999999984433211 000000 000022


Q ss_pred             CceEEEcCCcccccCCC---eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHH-----hhhchHHHHH
Q psy16848        319 NMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRI-----LSSQEGVELR  385 (514)
Q Consensus       319 ~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~  385 (514)
                      +..+++.|+||.++.+|   ||+++.....+.+.......     ......+...+.++...+..     ....+++.++
T Consensus       248 ~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (412)
T d1ajsa_         248 FELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA  327 (412)
T ss_dssp             CCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            56788889999998877   99888765544433221110     00113344455444444431     1133466788


Q ss_pred             HHHHHHHHHHHHHHHhCCC----ccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        386 AKHQDIVAYLRNELIQIGF----PVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      ++++++++.+.+.|++++.    .++.+.+++|.. ++.   ..+++++|++++||++.|+.           |++++ .
T Consensus       328 ~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~-~~l---s~~~v~~L~~e~gV~~vpg~-----------Ri~~a-g  391 (412)
T d1ajsa_         328 DRILSMRSELRARLEALKTPGTWNHITDQIGMFSF-TGL---NPKQVEYLINQKHIYLLPSG-----------RINMC-G  391 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEE-CCC---CHHHHHHHHHTTCEECCTTS-----------EEEGG-G
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEe-cCC---CHHHHHHHHHhCCEEEeCCC-----------eEEec-c
Confidence            8899999999999999854    334455555432 332   24566778789999987542           99986 3


Q ss_pred             CCHHHHHHHHHHHHHHHHHcC
Q psy16848        462 HTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .+++++++++++|++++++++
T Consensus       392 ~~~~~i~~~a~aI~~av~~~~  412 (412)
T d1ajsa_         392 LTTKNLDYVATSIHEAVTKIQ  412 (412)
T ss_dssp             CCTTTHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcC
Confidence            678899999999999998863

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=2e-21  Score=194.60  Aligned_cols=312  Identities=19%  Similarity=0.194  Sum_probs=214.4

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      ++-.+++.+.++. |.      +..  ++..+++|+++++++|.+++++++|||+|+..++.++. +++||+|+++..+|
T Consensus        12 ~~~~~~~~~~~~~-~~------~~~--G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~-~~~gdeVi~~~~~~   81 (376)
T d1mdoa_          12 AEELAAVKTVLDS-GW------ITT--GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTW   81 (376)
T ss_dssp             HHHHHHHHHHHHH-TC------CSS--SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSC
T ss_pred             HHHHHHHHHHHhc-CC------CcC--CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhC-CCCCCEEEEecccc
Confidence            4445778888775 21      112  36789999999999999999999999999999998874 45999999999999


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      .++..++..+|+.++.+..+                                                            
T Consensus        82 ~~~~~ai~~~g~~pv~~d~~------------------------------------------------------------  101 (376)
T d1mdoa_          82 VSTLNMIVLLGANPVMVDVD------------------------------------------------------------  101 (376)
T ss_dssp             HHHHHHHHHTTCEEEEECBC------------------------------------------------------------
T ss_pred             cccccchhccccceeeeccc------------------------------------------------------------
Confidence            99999888888776654331                                                            


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  271 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np  271 (514)
                                                                        .+++..+.+.+++..+++|++|++.+   .
T Consensus       102 --------------------------------------------------~~~~~~d~~~l~~~i~~~tkaIi~~h---~  128 (376)
T d1mdoa_         102 --------------------------------------------------RDTLMVTPEHIEAAITPQTKAIIPVH---Y  128 (376)
T ss_dssp             --------------------------------------------------TTTCCBCHHHHHHHCCTTEEEECCBC---G
T ss_pred             --------------------------------------------------ccccCCCHHHHHHhcCCCCeEEEEeC---C
Confidence                                                              11222333445555567799998765   4


Q ss_pred             CccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CCeEEEec-HHHHHHHH
Q psy16848        272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IGGYIVGT-KNFIDTIR  349 (514)
Q Consensus       272 tG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~GG~l~~~-~~~~~~l~  349 (514)
                      .|...++++|.++|+++|+++|+|++|++|..-. +    ...+ ..+...+.+..+|.++. .||+++++ +++.+.++
T Consensus       129 ~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~-~----~~~g-~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~  202 (376)
T d1mdoa_         129 AGAPADLDAIYALGERYGIPVIEDAAHATGTSYK-G----RHIG-ARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLR  202 (376)
T ss_dssp             GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEET-T----EETT-SSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHH
T ss_pred             CCCccchhHHHHHHHhcCceEEeccchhccCeeC-C----eecc-cccCccccCCCcCCCCCCCCCEEEEechhHHHHHH
Confidence            6999999999999999999999999999875311 1    1111 12334454455698865 34777665 56666665


Q ss_pred             hhcCce----------------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCc-c
Q psy16848        350 SYAAGF----------------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFP-V  406 (514)
Q Consensus       350 ~~~~~~----------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~  406 (514)
                      ......                      ++...++...++.+...|+.+     ++..++.++.++++.+.|.+.... .
T Consensus       203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~-----~~~~~~r~~~~~~~~~~L~~~~~~~~  277 (376)
T d1mdoa_         203 SLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL-----DALNARRAAIAAQYHQAMADLPFQPL  277 (376)
T ss_dssp             HHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHHTSSCEEC
T ss_pred             hhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh-----hHHHHHHhhhhhhhhhhccccccccc
Confidence            443211                      123456777777777776644     346778888888999999887322 2


Q ss_pred             ccCC-----C-cEEEEEeCC---CccHHHHHHHHHHhCCeEEecccCCC---------CCC---------CCcEEEEEeC
Q psy16848        407 EHTP-----S-HIIPIKIGN---PALNTKICDMLLKEKGHYVQPINYPT---------VPV---------GEEKIRLAPT  459 (514)
Q Consensus       407 ~~~~-----~-~~~~i~l~~---~~~~~~~~~~Ll~~~GI~v~~~~~~~---------~~~---------~~~~iRl~~~  459 (514)
                      ....     . ..+.+.+..   ....+++.+.| +++||.++....+.         ...         ..+.+.+.++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L-~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~  356 (376)
T d1mdoa_         278 SLPSWEHIHAWHLFIIRVDEARCGITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLF  356 (376)
T ss_dssp             CCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCC
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHH-HHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCC
Confidence            2111     1 123333332   12356899999 59999986433211         001         1467899888


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy16848        460 PFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       460 ~~~t~e~id~~~~~l~~~l  478 (514)
                      ..+|++|++++++.|++++
T Consensus       357 ~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         357 PDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            8999999999999999875

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=2.5e-21  Score=189.75  Aligned_cols=328  Identities=13%  Similarity=0.068  Sum_probs=202.6

Q ss_pred             eeeecccCCCCC-ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEE-EEeccccccccchhhcc
Q psy16848         19 VTCRLSSVQYKV-PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGL-VFTSCYVANDSTLFTLG   96 (514)
Q Consensus        19 ~~~d~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i-~~~sGt~a~~~~l~~l~   96 (514)
                      .++||+|.+|.+ ||+|.+|+.++...       ....++..+..+++++++++++|.+..+ |++|||+||..++..+.
T Consensus         3 ~~~~f~s~n~~g~~P~v~~A~~~a~~~-------~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~   75 (345)
T d1v72a1           3 PALGFSSDNIAGASPEVAQALVKHSSG-------QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT   75 (345)
T ss_dssp             CCCBCSCGGGCCCCHHHHHHHHHTTSS-------CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC
T ss_pred             CCcCcCCCCCCCCCHHHHHHHHHHhcc-------CccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHH
Confidence            578999988886 99999998774321       2223456789999999999999998765 55889999999998887


Q ss_pred             ccCCCceEEecCccchhhhhhhhc---CCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhh
Q psy16848         97 KMIPGLHYISDAGNHASMIQGIRN---SSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS  173 (514)
Q Consensus        97 ~~~~gd~v~~~~~~h~~~~~~~~~---~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
                      .  +++.+++....|.+.......   .+..+.......                                         
T Consensus        76 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  112 (345)
T d1v72a1          76 P--PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-----------------------------------------  112 (345)
T ss_dssp             C--TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-----------------------------------------
T ss_pred             h--cCCccccccccceeeechhhHHHhcCcccccccccc-----------------------------------------
Confidence            6  889999999999887654322   222222211100                                         


Q ss_pred             hhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHh
Q psy16848        174 HQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLE  253 (514)
Q Consensus       174 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~  253 (514)
                                                                                        ....+.+.+++.+.
T Consensus       113 ------------------------------------------------------------------~~~~~~~~l~~~~~  126 (345)
T d1v72a1         113 ------------------------------------------------------------------AAKLDIVRLRERTR  126 (345)
T ss_dssp             ------------------------------------------------------------------GGCCCHHHHHHHTT
T ss_pred             ------------------------------------------------------------------cccccHHHhhhhhc
Confidence                                                                              00113344444443


Q ss_pred             hcc--CCCce-EEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        254 NMD--VKIPK-LVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       254 ~~~--~~~~~-~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +..  ...+. .++.....|+.|...+   ++++.++|++||+++++|+++..+.......+.. ........+..+.+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  205 (345)
T d1v72a1         127 EKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPA-EMTWKAGVDALSFGA  205 (345)
T ss_dssp             SSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTT-TTTGGGTCCEEEECC
T ss_pred             ccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHH-HhhccccccccccCc
Confidence            321  11222 3444555566666655   6888889999999999999998443322211121 111123455564455


Q ss_pred             cccccCCCeEE-EecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16848        328 GKAFGNIGGYI-VGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFP  405 (514)
Q Consensus       328 sK~lg~~GG~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  405 (514)
                      +|..+..++.. .................  . ........++.+...........+...+...+..++.+.+.++ ++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  282 (345)
T d1v72a1         206 TKNGVLAAEAIVLFNTSLATEMSYRRKRA--G-HLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVE  282 (345)
T ss_dssp             GGGTCSSCEEEEESSGGGHHHHHHHHHHT--T-CCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             cccccccccccccchhhhhhhcccccccc--c-cccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcE
Confidence            55444323333 33333332222211111  1 1111222223333333334455566677778888888888887 666


Q ss_pred             ccc-CCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        406 VEH-TPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       406 ~~~-~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.. +.++++.+.++     .+.++.|+ ++|+.+..     .+.+.+.+|++++..+|+||||+++++|+++
T Consensus       283 ~~~p~~~niv~~~~~-----~~~~~~L~-~~gi~v~~-----~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         283 VLGGTEANILFCRLD-----SAMIDALL-KAGFGFYH-----DRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             EESCCCSSEEEEEEC-----HHHHHHHH-HTTCBCBC-----SSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             eccCCCccEEEEEcC-----HHHHHHHH-HcCCCccc-----cCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            553 45677777764     35678886 89998753     2345679999999999999999999999864

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.88  E-value=2.2e-21  Score=199.73  Aligned_cols=315  Identities=14%  Similarity=0.064  Sum_probs=202.2

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccc-cccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVA-NDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a-~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ...+.++++++|+++|.++++|++|||++ |++++.++++  |||+|+++..+|.|+++++...+.....|.+.+.+   
T Consensus        65 ~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~--~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~---  139 (462)
T d1c4ka2          65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS--NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN---  139 (462)
T ss_dssp             BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC---
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcC--CCCeEEecccchHHHHHHHHHHhcCCceeeecccc---
Confidence            46788999999999999999999999876 6677777766  99999999999999998766554333322221000   


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                    +           .|                    
T Consensus       140 ----------------------------------------------~-----------~g--------------------  142 (462)
T d1c4ka2         140 ----------------------------------------------P-----------YG--------------------  142 (462)
T ss_dssp             ----------------------------------------------T-----------TC--------------------
T ss_pred             ----------------------------------------------c-----------cc--------------------
Confidence                                                          0           00                    


Q ss_pred             CceeeecchHHHHhhCCCCEEEec--CCChhHHHHH-----HhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCC
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYR--HNDVNHLTQV-----LENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGA  290 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~--~~d~~~l~~~-----l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv  290 (514)
                                        .+..++  .-+.+.+.+.     ++.....+++.+++.+.+|..|.+.|+++|.++|+++|+
T Consensus       143 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~  204 (462)
T d1c4ka2         143 ------------------FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCD  204 (462)
T ss_dssp             ------------------CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBS
T ss_pred             ------------------ccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCC
Confidence                              000000  0011111111     222334556777777888899999999999999999999


Q ss_pred             EEEEeccccccccCCCC-----CCccccCCCccCceEEEcCCcccccCCC-eEE-EecHHHH---------HHHHhhcCc
Q psy16848        291 LTFVDEVHAVGLYGEHG-----AGIGERDGQLHNMDIISGTLGKAFGNIG-GYI-VGTKNFI---------DTIRSYAAG  354 (514)
Q Consensus       291 ~li~Dea~~~g~~g~~~-----~~~~~~~~~~~~~di~~~S~sK~lg~~G-G~l-~~~~~~~---------~~l~~~~~~  354 (514)
                      ++++|++|+.+......     .......+...+.|++++|+||++++.+ |.+ ..+...+         +.+..... 
T Consensus       205 ~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~-  283 (462)
T d1c4ka2         205 YIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFN-  283 (462)
T ss_dssp             EEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHH-
T ss_pred             EEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhh-
Confidence            99999999965532111     0011111223457999999999998744 444 4443322         11211111 


Q ss_pred             eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------
Q psy16848        355 FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVE---------------------------  407 (514)
Q Consensus       355 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~---------------------------  407 (514)
                      ...+++.+...++.+..+......+...++.++..++.+++++.+.+....+.                           
T Consensus       284 ~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  363 (462)
T d1c4ka2         284 LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW  363 (462)
T ss_dssp             HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred             hcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchh
Confidence            11134566777777777777766566677888888999999999887621100                           


Q ss_pred             --------------cCCCc-----EEEEEeCC-----------CccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE
Q psy16848        408 --------------HTPSH-----IIPIKIGN-----------PALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA  457 (514)
Q Consensus       408 --------------~~~~~-----~~~i~l~~-----------~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~  457 (514)
                                    .....     -+.+..+.           +.....+.+.| +++||.+.       ..+...+|++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L-~~~gI~~e-------~~~~~~i~~~  435 (462)
T d1c4ka2         364 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL-RDHGIIPE-------KSDLNSILFL  435 (462)
T ss_dssp             BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHH-HHTTCCCS-------EECSSEEEEE
T ss_pred             ccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHH-HHcCCeee-------ccCCCeEEEE
Confidence                          00000     02222211           12346677777 58999753       2235689999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        458 PTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       458 ~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      ++..+|++|+|+++++|+++.+.++
T Consensus       436 ~s~~~T~edid~li~aL~ei~r~~~  460 (462)
T d1c4ka2         436 MTPAETPAKMNNLITQLLQLQRLIE  460 (462)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887653

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.6e-22  Score=201.59  Aligned_cols=335  Identities=15%  Similarity=0.034  Sum_probs=209.6

Q ss_pred             eeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC----CcE--EEEeccc
Q psy16848         19 VTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK----EAG--LVFTSCY   85 (514)
Q Consensus        19 ~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~--i~~~sGt   85 (514)
                      ..||+.-+.|.+       .|.|+++..+.++...  ..++....|..++.+++.+++.+..+.    +..  +.+++|+
T Consensus        27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~--~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~  104 (396)
T d2q7wa1          27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET--TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGT  104 (396)
T ss_dssp             -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred             CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCC--CCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHH
Confidence            358886554432       3678888777776532  223445667777777777666655442    222  2233444


Q ss_pred             cccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccc
Q psy16848         86 VANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICP  165 (514)
Q Consensus        86 ~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
                      .+...++..+...++||.|+++.+.|......++..|++++.++..+.+.                              
T Consensus       105 ~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~------------------------------  154 (396)
T d2q7wa1         105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAEN------------------------------  154 (396)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTT------------------------------
T ss_pred             HHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccc------------------------------
Confidence            44433333332244999999999999999888888887776554310000                              


Q ss_pred             hhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCCh
Q psy16848        166 LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDV  245 (514)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~  245 (514)
                                                     .                                            ..+.
T Consensus       155 -------------------------------~--------------------------------------------~~~~  159 (396)
T d2q7wa1         155 -------------------------------H--------------------------------------------TLDF  159 (396)
T ss_dssp             -------------------------------T--------------------------------------------EECH
T ss_pred             -------------------------------c--------------------------------------------cccc
Confidence                                           0                                            0022


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCC-CCccccCCCccCce
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG-AGIGERDGQLHNMD  321 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~-~~~~~~~~~~~~~d  321 (514)
                      ....+... ...++++++++++||||||.+++   +++|.++|++|++++|+||+|.....+... ........-..+..
T Consensus       160 ~~~~~~~~-~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  238 (396)
T d2q7wa1         160 DALINSLN-EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL  238 (396)
T ss_dssp             HHHHHHHT-TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred             chHHHHHH-HhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccc
Confidence            33333332 23456889999999999999999   799999999999999999999944332111 00100000022456


Q ss_pred             EEEcCCcccccCCC---eEEEecHHHHHHHHhhcCce-----EeccCCcHHHHHHHHHHHHH-----hhhchHHHHHHHH
Q psy16848        322 IISGTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGF-----IFTTSLPPTVLAGAREAIRI-----LSSQEGVELRAKH  388 (514)
Q Consensus       322 i~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~  388 (514)
                      +++.|++|.++.+|   ||+++++..++.+.......     ....+.+...+.++...+..     ...+.++++++++
T Consensus       239 ~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (396)
T d2q7wa1         239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI  318 (396)
T ss_dssp             EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred             cccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            78889999998878   99998876665544332110     00123455555554444321     1134567788889


Q ss_pred             HHHHHHHHHHHHhCCC----ccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCC
Q psy16848        389 QDIVAYLRNELIQIGF----PVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHT  463 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~----~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t  463 (514)
                      +++++.+.+.|++++.    .++.++++ |.++.+     ..+++++|++++||++.++.           |++++ ..+
T Consensus       319 ~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-----~~e~~~~L~~e~gV~~~~g~-----------Ri~~a-~l~  381 (396)
T d2q7wa1         319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL-----TKEQVLRLREEFGVYAVASG-----------RVNVA-GMT  381 (396)
T ss_dssp             HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCTTC-----------EEEGG-GCC
T ss_pred             HHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCC-----CHHHHHHHHHhCCEEECCCC-----------EEEec-CCC
Confidence            9999999999999853    33444444 444433     24667888888999986432           89987 467


Q ss_pred             HHHHHHHHHHHHHHH
Q psy16848        464 REMIDKFVTDLLAVW  478 (514)
Q Consensus       464 ~e~id~~~~~l~~~l  478 (514)
                      +++|++++++|.+++
T Consensus       382 ~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         382 PDNMAPLCEAIVAVL  396 (396)
T ss_dssp             TTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            889999999998763

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.87  E-value=9.4e-22  Score=198.88  Aligned_cols=207  Identities=17%  Similarity=0.180  Sum_probs=149.6

Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cC
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GN  333 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~  333 (514)
                      ..+++|++|++++++|.||...|+++|.++|+++|+++++|.+|+.|..        +......++|++++|.||++ ++
T Consensus       160 ~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~--------~~~~~~~~~d~~~~s~~K~~~~~  231 (404)
T d1qz9a_         160 AIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV--------PVDLHQAGADYAIGCTYKYLNGG  231 (404)
T ss_dssp             HCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS--------CCCHHHHTCSEEEECSSSTTCCC
T ss_pred             hcCCCceEEEEecccccccceecHHHHhccccccccceeEEeecccccc--------ccccccccceEEEEechhhcccC
Confidence            4467799999999999999999999999999999999999999997764        22222457899999999987 34


Q ss_pred             CC--eEEEecHHHHHHHHhhcCceE---------------------eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        334 IG--GYIVGTKNFIDTIRSYAAGFI---------------------FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       334 ~G--G~l~~~~~~~~~l~~~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                      +|  |+++.++...+.+......+.                     .....+..........+..+.......+.++...
T Consensus       232 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  311 (404)
T d1qz9a_         232 PGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLA  311 (404)
T ss_dssp             TTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44  788888777655432211100                     0123455566666666776666666666666666


Q ss_pred             HHHHHHHHHH---h-CCCccccC-----CCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeC-C
Q psy16848        391 IVAYLRNELI---Q-IGFPVEHT-----PSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPT-P  460 (514)
Q Consensus       391 ~~~~l~~~L~---~-~g~~~~~~-----~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~-~  460 (514)
                      ..+.+.+.+.   . .++.+..+     .++++.+.+++   ..++.+.| .++||.+..       ..++.||++++ .
T Consensus       312 ~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~---~~~v~~~L-~~~gi~~~~-------r~~~~lRiS~~h~  380 (404)
T d1qz9a_         312 LTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---GYAVIQAL-IDRGVIGDY-------REPRIMRFGFTPL  380 (404)
T ss_dssp             HHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---HHHHHHHH-HTTTEECEE-------ETTTEEEEECCTT
T ss_pred             hHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC---HHHHHHHH-HHCCCEEee-------cCCCeEEEECCCC
Confidence            5555554433   2 26766544     24578888764   67888999 599997631       12468999995 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy16848        461 FHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       461 ~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++|++||++++++|++++++
T Consensus       381 ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         381 YTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999976

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=7.2e-22  Score=199.22  Aligned_cols=334  Identities=16%  Similarity=0.065  Sum_probs=210.6

Q ss_pred             eeeecccCCCCC-------ChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCC---CcEEEEecccccc
Q psy16848         19 VTCRLSSVQYKV-------PKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQK---EAGLVFTSCYVAN   88 (514)
Q Consensus        19 ~~~d~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~i~~~sGt~a~   88 (514)
                      ..||+.-..|.+       .|.|++++.+.++....  .++....|..++.+++.+.+.+..+.   ...+.+++|+.+.
T Consensus        27 ~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~--~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~  104 (394)
T d2ay1a_          27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT--KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL  104 (394)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHH
T ss_pred             CCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHH
Confidence            358886554542       36788888887776322  23445567777777777776655443   3346677776664


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ..++..+...++||.|+++.+.|......++..|.+++.++..+.+                                  
T Consensus       105 ~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~----------------------------------  150 (394)
T d2ay1a_         105 RQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAE----------------------------------  150 (394)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETT----------------------------------
T ss_pred             HHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchh----------------------------------
Confidence            4444333324599999999999999888888888777765431000                                  


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHL  248 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l  248 (514)
                                                ..                                             ..+.+..
T Consensus       151 --------------------------~~---------------------------------------------~~~~~~~  159 (394)
T d2ay1a_         151 --------------------------TR---------------------------------------------GVDFEGM  159 (394)
T ss_dssp             --------------------------TT---------------------------------------------EECHHHH
T ss_pred             --------------------------cc---------------------------------------------cccchhH
Confidence                                      00                                             0022333


Q ss_pred             HHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCC-CCccccCCCccCceEEE
Q psy16848        249 TQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHG-AGIGERDGQLHNMDIIS  324 (514)
Q Consensus       249 ~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~-~~~~~~~~~~~~~di~~  324 (514)
                      ++.+.. ..+++++++++++|||||.+++   +++|.++|++|++++|+||+|....++... ..............+++
T Consensus       160 ~~~~~~-~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T d2ay1a_         160 KADLAA-AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA  238 (394)
T ss_dssp             HHHHHT-CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred             HHHHhh-cccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccc
Confidence            333332 3456789999999999999999   799999999999999999999943332110 00110111112346777


Q ss_pred             cCCcccccCCC---eEEEecHHHHHHHHhhcCceE-----eccCCcHHHHHHHHHHHH-----HhhhchHHHHHHHHHHH
Q psy16848        325 GTLGKAFGNIG---GYIVGTKNFIDTIRSYAAGFI-----FTTSLPPTVLAGAREAIR-----ILSSQEGVELRAKHQDI  391 (514)
Q Consensus       325 ~S~sK~lg~~G---G~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~l~-----~~~~~~~~~~~~~~~~~  391 (514)
                      .|++|.++..|   |+++++...++..........     .....+...++.+...+.     ....+..+.+++++.++
T Consensus       239 ~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  318 (394)
T d2ay1a_         239 ASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRL  318 (394)
T ss_dssp             EECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            89999998767   998887665554433221100     011223333333333222     11134556778888899


Q ss_pred             HHHHHHHHHhCC----CccccCCCcEE-EEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHH
Q psy16848        392 VAYLRNELIQIG----FPVEHTPSHII-PIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREM  466 (514)
Q Consensus       392 ~~~l~~~L~~~g----~~~~~~~~~~~-~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~  466 (514)
                      ++.+.+.|++++    +.+..+++++| ++.+     ..+++++|++++||++.++           .||+++ ..++++
T Consensus       319 r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-----s~~~~~~L~~~~~V~~~~g-----------~Ri~~a-~l~~~~  381 (394)
T d2ay1a_         319 REQLAGELRDLSGSDRFGFVAEHRGMFSRLGA-----TPEQVKRIKEEFGIYMVGD-----------SRINIA-GLNDNT  381 (394)
T ss_dssp             HHHHHHHHHHHHTSSTTTHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCTT-----------CEEEGG-GCCTTT
T ss_pred             HHHHHHHHHHhCCCCceeeECCCceeEEecCc-----CHHHHHHHHHhCCEEecCC-----------CEEEec-CCCHHH
Confidence            999999998863    45555666644 3433     2467788888899998753           399987 577889


Q ss_pred             HHHHHHHHHHH
Q psy16848        467 IDKFVTDLLAV  477 (514)
Q Consensus       467 id~~~~~l~~~  477 (514)
                      |++++++|.++
T Consensus       382 i~~l~~ai~~v  392 (394)
T d2ay1a_         382 IPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.87  E-value=5.8e-21  Score=193.56  Aligned_cols=217  Identities=11%  Similarity=0.088  Sum_probs=147.5

Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCC-CCCCc-----cccCC
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGE-HGAGI-----GERDG  315 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~-~~~~~-----~~~~~  315 (514)
                      .+.+++.+.+. +++++++++++||||||.+++   +++|.++|+++++++|+||+|....++. ...+.     .....
T Consensus       163 ~~~~~~~~~~~-~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  241 (412)
T d1yaaa_         163 LNGFLNAIQKA-PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             HHHHHHHHHHS-CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             chhhhcccccC-CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccc
Confidence            34444444433 456789999999999999999   8999999999999999999998433321 11000     00011


Q ss_pred             CccCceEEEcCCcccccCCC---eEEEecHHHHHHHHhh-----------cCceEeccCCcHHHHHHHHHHHHHh-----
Q psy16848        316 QLHNMDIISGTLGKAFGNIG---GYIVGTKNFIDTIRSY-----------AAGFIFTTSLPPTVLAGAREAIRIL-----  376 (514)
Q Consensus       316 ~~~~~di~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~a~~~~l~~~-----  376 (514)
                       ..+..+++.|+||.++.+|   ||+++++++++.+...           ....  ..+.+...+.++...+...     
T Consensus       242 -~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~  318 (412)
T d1yaaa_         242 -TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSE--VSNPPAYGAKIVAKLLETPELTEQ  318 (412)
T ss_dssp             -TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHSHHHHHH
T ss_pred             -cCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHhcChHHHHH
Confidence             2356789999999999888   9999876543222111           1111  2245666666666655421     


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCc
Q psy16848        377 SSQEGVELRAKHQDIVAYLRNELIQIG----FPVEHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEE  452 (514)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~  452 (514)
                      ...+++.++++++++++.+.+.|++.|    +.+..+.++||.. ++-   ..+++++|++++||++.++          
T Consensus       319 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~-~~l---s~e~~~~L~~e~~V~~~~g----------  384 (412)
T d1yaaa_         319 WHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSF-TGL---TPQMVKRLEETHAVYLVAS----------  384 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEE-CCC---CHHHHHHHHHHHCEECCTT----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEe-cCc---CHHHHHHHHHhCCEEECCC----------
Confidence            124467788889999999999998875    3445566665532 222   3467888888999998643          


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        453 KIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       453 ~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                       .|++++ ..++++++.++++|.++++.+
T Consensus       385 -~Ris~~-g~~~~~i~~l~~ai~~v~k~~  411 (412)
T d1yaaa_         385 -GRASIA-GLNQGNVEYVAKAIDEVVRFY  411 (412)
T ss_dssp             -SEEEGG-GCCTTTHHHHHHHHHHHHHHC
T ss_pred             -CEEEec-cCCHHHHHHHHHHHHHHHHhh
Confidence             389986 367788999999999988764

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.87  E-value=1.3e-20  Score=188.57  Aligned_cols=212  Identities=20%  Similarity=0.257  Sum_probs=159.7

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG  335 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G  335 (514)
                      .++++++.+.+.+|.+|...|+++|.++|+++|+++++|.++++|..        +.+....+.|++++|.+|++++ +|
T Consensus       141 ~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~--------~~~~~~~~~d~~~~s~~K~~~gp~g  212 (377)
T d1vjoa_         141 THRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV--------PIFLDAWGVDLAYSCSQKGLGCSPG  212 (377)
T ss_dssp             HHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS--------CCCTTTTTCSEEECCSSSTTCSCSS
T ss_pred             cCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhh--------hhcccccccceeeecccccccCCCE
Confidence            34578999999999999999999999999999999999999997764        2222245889999999998854 45


Q ss_pred             -eEEEecHHHHHHHHhhcCce------------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy16848        336 -GYIVGTKNFIDTIRSYAAGF------------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLR  396 (514)
Q Consensus       336 -G~l~~~~~~~~~l~~~~~~~------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  396 (514)
                       |+++.++..++.......+.                  ...++.+......+..++......+.+...++.+++.+++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~  292 (377)
T d1vjoa_         213 ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW  292 (377)
T ss_dssp             CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhh
Confidence             88888888877665433221                  11223344445555566666656677888889999999999


Q ss_pred             HHHHhCCCccccCC----CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE-eCCCCCHHHHHHHH
Q psy16848        397 NELIQIGFPVEHTP----SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA-PTPFHTREMIDKFV  471 (514)
Q Consensus       397 ~~L~~~g~~~~~~~----~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~-~~~~~t~e~id~~~  471 (514)
                      +.+.+.++....+.    ..++.+.++++.+..++.+.|++++||.+..|..+.   ..+.+|++ ++..+|+|||++++
T Consensus       293 ~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~---~~~~~Ris~~g~~~t~edi~~lv  369 (377)
T d1vjoa_         293 ERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL---AGKVWRVGLMGFNSRKESVDQLI  369 (377)
T ss_dssp             HHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG---TTTEEEEECCGGGCSHHHHHHHH
T ss_pred             hhhhccCceeecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccc---cCCEEEEecCcCCCCHHHHHHHH
Confidence            99998876554221    226678888777889999999777899998776532   35689999 46677899999999


Q ss_pred             HHHHHHHH
Q psy16848        472 TDLLAVWK  479 (514)
Q Consensus       472 ~~l~~~l~  479 (514)
                      ++|+++++
T Consensus       370 ~al~~~l~  377 (377)
T d1vjoa_         370 PALEQVLR  377 (377)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99999874

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=2.8e-20  Score=184.88  Aligned_cols=211  Identities=15%  Similarity=0.182  Sum_probs=155.5

Q ss_pred             cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cCC
Q psy16848        256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GNI  334 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~~  334 (514)
                      ..++++++.+++.+|.||...|+++|.++|++||+++++|.++++|..        +.+-...++|++++|.+|++ |+.
T Consensus       124 ~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~--------~~d~~~~~~D~~~~s~~K~l~gp~  195 (361)
T d1m32a_         124 ADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI--------PMDIAALHIDYLISSANKCIQGVP  195 (361)
T ss_dssp             HCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS--------CCCTTTTTCSEEEEESSSTTCCCS
T ss_pred             hccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcc--------cccccccccceEEeeecccccCCC
Confidence            456799999999999999999999999999999999999999998765        22222458999999999999 556


Q ss_pred             C-eEEEecHHHHHHHHhhcCce----------------EeccCCcHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHH
Q psy16848        335 G-GYIVGTKNFIDTIRSYAAGF----------------IFTTSLPPTVLAGAREAIRILSSQE-GVELRAKHQDIVAYLR  396 (514)
Q Consensus       335 G-G~l~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~l~  396 (514)
                      | |+++.+++..+..+....++                .+..+.+.....+...++.....+. ......+.+...+.+.
T Consensus       196 G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  275 (361)
T d1m32a_         196 GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLV  275 (361)
T ss_dssp             SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence            7 99999888776554433221                0122445566666666676554443 3455566777778888


Q ss_pred             HHHHhCCCccccC---CC-cEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q psy16848        397 NELIQIGFPVEHT---PS-HIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKF  470 (514)
Q Consensus       397 ~~L~~~g~~~~~~---~~-~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~  470 (514)
                      +.++..++....+   ++ .++.+.+++.  .+..++.+.| .++||.+.+|..    ...+.+|++...+++++||+++
T Consensus       276 ~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l-~~~gi~i~~G~~----~~~~~~Ris~~g~~~~~di~~l  350 (361)
T d1m32a_         276 AGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRL-KEQGFVIYPGKV----SQSDCFRIGNIGEVYAADITAL  350 (361)
T ss_dssp             HHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHH-HHTTEECEECCC----SSSCEEEEECCSSCCHHHHHHH
T ss_pred             HHHhhcCCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHH-HHCCcEEECCCc----CCCCEEEEeCCCCCCHHHHHHH
Confidence            8888887655333   22 3566777642  4567888999 599999987653    2246899996546899999999


Q ss_pred             HHHHHHHHH
Q psy16848        471 VTDLLAVWK  479 (514)
Q Consensus       471 ~~~l~~~l~  479 (514)
                      +++|++++.
T Consensus       351 v~al~~~L~  359 (361)
T d1m32a_         351 LTAIRTAMY  359 (361)
T ss_dssp             HHHHHHHCT
T ss_pred             HHHHHHHcC
Confidence            999998753

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.85  E-value=1.1e-20  Score=193.19  Aligned_cols=372  Identities=13%  Similarity=0.104  Sum_probs=226.3

Q ss_pred             CceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhcc
Q psy16848         17 NRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLG   96 (514)
Q Consensus        17 g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~   96 (514)
                      ...+||+-+.+.-  ..+.+++..++.. |-      -.|+..+-..+||+++++++|.+++++++|||.|+.+++.+++
T Consensus        41 ~~v~iDl~sDs~t--~am~~~~~aa~~~-GD------d~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~  111 (456)
T d1c7ga_          41 KDIYIDLLTDSGT--NAMSDKQWAGMMI-GD------EAYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAI  111 (456)
T ss_dssp             GGCSEECSCSSSC--CCEEHHHHHHTTS-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHC
T ss_pred             cceeeEcccCCCc--ccchHHHHHHHhc-cc------hhccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhc
Confidence            3567888655432  2333333333221 11      1344567789999999999999999999999999999999997


Q ss_pred             ccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhc
Q psy16848         97 KMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH  176 (514)
Q Consensus        97 ~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (514)
                      +  |||+|+.....+.. ...+...|+.++.....                       ..+                   
T Consensus       112 ~--~Gd~Vi~~~~f~~~-~~~i~~~g~~~~~~~~~-----------------------~~~-------------------  146 (456)
T d1c7ga_         112 K--PGQYVAGNMYFTTT-RFHQEKNGATFVDIVRD-----------------------EAH-------------------  146 (456)
T ss_dssp             C--TTEEEEESSCCHHH-HHHHHHTTEEEEECBCG-----------------------GGG-------------------
T ss_pred             C--CCCeEecCcchHHH-HHHHHHcCceeeecccc-----------------------ccc-------------------
Confidence            7  99999986653322 22334444443321110                       000                   


Q ss_pred             CceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-CCChhHHHHHHhhc
Q psy16848        177 GALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-HNDVNHLTQVLENM  255 (514)
Q Consensus       177 ~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~  255 (514)
                                .                                              ........ ..|.+.+++.+++.
T Consensus       147 ----------~----------------------------------------------~~~~~~~~~~~d~~~le~~I~~~  170 (456)
T d1c7ga_         147 ----------D----------------------------------------------ASLNLPFKGDIDLNKLATLIKEK  170 (456)
T ss_dssp             ----------C----------------------------------------------TTCCCSCTTCBCHHHHHHHHHHH
T ss_pred             ----------c----------------------------------------------ccccCCccccCCHHHHHHHhhhc
Confidence                      0                                              00000001 23788999999887


Q ss_pred             cCCCceEEEEecCCCCCc-cccC---HHHHHHHHHHcCCEEEEecccccccc--------CCCCCCccccC-CCccCceE
Q psy16848        256 DVKIPKLVAFETVHSMTG-AICP---LKELCEVSHQHGALTFVDEVHAVGLY--------GEHGAGIGERD-GQLHNMDI  322 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG-~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~--------g~~~~~~~~~~-~~~~~~di  322 (514)
                      ..+++.++++++++|+.| .+++   +++|.++|++||+.+++|+++.++..        +..+.++.+.. ......|+
T Consensus       171 ~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~  250 (456)
T d1c7ga_         171 GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADG  250 (456)
T ss_dssp             CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSE
T ss_pred             CCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhcccccccccc
Confidence            666788999999999865 4455   78999999999999999999875421        11111111100 00124789


Q ss_pred             EEcCCcccccC-CCeEEEec-HHHHHHHHhhc---CceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q psy16848        323 ISGTLGKAFGN-IGGYIVGT-KNFIDTIRSYA---AGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRN  397 (514)
Q Consensus       323 ~~~S~sK~lg~-~GG~l~~~-~~~~~~l~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  397 (514)
                      +++|++|.++. .||+++.+ +++.+.++...   .++......+...+.++...+......   +..++..++.++|.+
T Consensus       251 ~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~---~~l~~r~~~~~~L~e  327 (456)
T d1c7ga_         251 CTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQY---EYIEHRVKQVRYLGD  327 (456)
T ss_dssp             EEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHH
T ss_pred             EEEeccccccccceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHH
Confidence            99999999976 35887765 55666655332   111111133444444444444433222   244555667789999


Q ss_pred             HHHhCCCccccCCC-cEEEEEe----C----CCccHHHHHHHHHHhCCeEEecccCCC---CC-------CCCcEEEEEe
Q psy16848        398 ELIQIGFPVEHTPS-HIIPIKI----G----NPALNTKICDMLLKEKGHYVQPINYPT---VP-------VGEEKIRLAP  458 (514)
Q Consensus       398 ~L~~~g~~~~~~~~-~~~~i~l----~----~~~~~~~~~~~Ll~~~GI~v~~~~~~~---~~-------~~~~~iRl~~  458 (514)
                      .|.+.|++++.+.+ +...+..    +    ......++...++.+.||...+...+.   .+       .....+|+++
T Consensus       328 ~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLai  407 (456)
T d1c7ga_         328 KLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTI  407 (456)
T ss_dssp             HHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEEC
T ss_pred             HHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEec
Confidence            99999988876544 3333321    1    112345666666668899765432110   01       1234799998


Q ss_pred             CC-CCCHHHHHHHHHHHHHHHHHcCCccCCcchhhHhHHHHHHH
Q psy16848        459 TP-FHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFIIL  501 (514)
Q Consensus       459 ~~-~~t~e~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  501 (514)
                      +. ..|++++|.++++|++++++.+...+.....+++++++|.+
T Consensus       408 p~~~~T~e~iD~Vae~i~~v~~~~~~i~gl~~~~e~~~lr~f~~  451 (456)
T d1c7ga_         408 PRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQLRFFTA  451 (456)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHTTGGGCCCEEEEECCSSSHHHHC
T ss_pred             CcccCCHHHHHHHHHHHHHHHhhhhhcCCceEEeccccceeeee
Confidence            73 45999999999999999876543322233456777776543

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.85  E-value=6.6e-21  Score=192.25  Aligned_cols=203  Identities=14%  Similarity=0.045  Sum_probs=142.2

Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCC
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNI  334 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~  334 (514)
                      ..+++++++++++||||||.+..       +-.+++.+|.||+|....    ..++   .. ..+.++++.||||.+|.+
T Consensus       192 ~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~----f~~~---~~-~~~~~Ivl~S~SK~fgla  256 (425)
T d2hoxa1         192 VSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPH----YTPI---KY-KADEDILLFTMSKFTGHS  256 (425)
T ss_dssp             CSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTT----TSCC---CS-CBCCSEEEEEHHHHTSCG
T ss_pred             hCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCcc----ccch---hh-hcCCeEEEEeCHHhccCc
Confidence            34567899999999999998743       223589999999996221    1112   22 236789999999999988


Q ss_pred             C---eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhh----------hchHHHHHHHHHHHHHHHHHHHH
Q psy16848        335 G---GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILS----------SQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       335 G---G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      |   ||++++ +.+.+.+.......  +.+.+...+.++.++|+...          .+..+..++.++++++++.+.|.
T Consensus       257 GlRiGw~i~~~~~i~~~~~~~~~~~--~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~  334 (425)
T d2hoxa1         257 GSRFGWALIKDESVYNNLLNYMTKN--TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLD  334 (425)
T ss_dssp             GGCCEEEEECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chheeeEEeCCHHHHHHHHHhhccC--cccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8   997654 66767776654433  33677888888888776431          13356677888899999999998


Q ss_pred             hCCCcc----------------ccCCCcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCH
Q psy16848        401 QIGFPV----------------EHTPSHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTR  464 (514)
Q Consensus       401 ~~g~~~----------------~~~~~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~  464 (514)
                      +.+.-.                ..+.+.+.+++....  ..+++..+++++||.++||..+.  .+++++|+++.  .++
T Consensus       335 ~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~--~~~~~~~lL~e~gI~v~pGs~FG--~~~~yvRisl~--~~~  408 (425)
T d2hoxa1         335 QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--EDKDCYQTFQNGRINTQNGVGFE--ASSRYVRLSLI--KTQ  408 (425)
T ss_dssp             TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--GGCSHHHHHHHTTEECEEGGGGT--SCTTEEEEECS--SCH
T ss_pred             hcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC--hHHHHHHHHHhCCEEEEechhcC--CCCCEEEEEec--CCH
Confidence            864211                122333556665432  23344455579999999999764  34689999997  578


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy16848        465 EMIDKFVTDLLAVWKS  480 (514)
Q Consensus       465 e~id~~~~~l~~~l~~  480 (514)
                      |++++++++|++++++
T Consensus       409 e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         409 DDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8999999999998753

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.85  E-value=3.1e-19  Score=176.19  Aligned_cols=214  Identities=21%  Similarity=0.202  Sum_probs=169.3

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+-...||++++++-|.+.+++++||..|+..++.++++  +||+|+++...|..+..-+                    
T Consensus        62 nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~--~Gd~vi~~~~~Yg~t~~~~--------------------  119 (397)
T d1y4ia1          62 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ--QGDHIVSASAIYGCTHAFL--------------------  119 (397)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSSCHHHHHHH--------------------
T ss_pred             CHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccC--CCCeeeeecccccccchhh--------------------
Confidence            577899999999999999999999999999999989877  9999999999888776322                    


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (397)
T d1y4ia1         120 --------------------------------------------------------------------------------  119 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                              ...+...|.++.+++..|.+.+++.+    .++|++|++|+|.||+..+.++++|+++|+++|+++++|...
T Consensus       120 --------~~~l~~~Gi~~~~vd~~d~~~~~~~i----~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~  187 (397)
T d1y4ia1         120 --------SHSMPKFGINVRFVDAGKPEEIRAAM----RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF  187 (397)
T ss_dssp             --------HTHHHHTTCEEEEECTTSHHHHHHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             --------hcccCCCceEeeccCCCCHHHHHHhc----CCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcc
Confidence                    12234557777788877776666665    457999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHh--hcCceEeccCCcHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRS--YAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      +-...         ...+..++|+++.|.+|.+++.+    |+++++++.+...+.  .+...  +..+++..+..+...
T Consensus       188 atP~~---------~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~--G~~l~p~~a~l~~rg  256 (397)
T d1y4ia1         188 MSPYC---------QQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDIT--GGCMSPFNAWLTLRG  256 (397)
T ss_dssp             TCTTT---------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTT--CCCCCHHHHHHHHHH
T ss_pred             cCccc---------CcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCc--CCcCCHHHHHHHHcC
Confidence            73322         12235589999999999998744    999999887765432  22122  446788888777777


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      |+-+     .-++++..+++..+.+.|++.
T Consensus       257 l~TL-----~lRm~~~~~nA~~lA~~L~~h  281 (397)
T d1y4ia1         257 VKTL-----GIRMERHCENALKIARFLEGH  281 (397)
T ss_dssp             HTTH-----HHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcH-----HHHHHHHHHHHHHHHHHHHhC
Confidence            6643     346788888999999999886

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.85  E-value=8.7e-20  Score=183.19  Aligned_cols=215  Identities=18%  Similarity=0.149  Sum_probs=158.4

Q ss_pred             CCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-
Q psy16848        258 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-  335 (514)
Q Consensus       258 ~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-  335 (514)
                      .+++++.+.+.+|.+|...|++++.++|+++|+++++|.++++|..        +.+....+.|++++|.+|++++ +| 
T Consensus       141 ~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~--------pid~~~~~~d~~~~s~~K~~~gp~G~  212 (388)
T d2ch1a1         141 HQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV--------PFYMDKWEIDAVYTGAQKVLGAPPGI  212 (388)
T ss_dssp             HCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB--------CCCTTTTTCCEEECCCC-CCCCCSSC
T ss_pred             CCcceeeeeecccccccccchhhhcchhccccceeeeeeeeccccc--------ccchhccCceEEEEccccccCCCCeE
Confidence            3578999999999999999999999999999999999999997764        2222245899999999999955 55 


Q ss_pred             eEEEecHHHHHHHHhhcCce---------------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy16848        336 GYIVGTKNFIDTIRSYAAGF---------------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAY  394 (514)
Q Consensus       336 G~l~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  394 (514)
                      |+++.++..++.......+.                     .+..+.+.....++..+++.+..........+.+.....
T Consensus       213 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~  292 (388)
T d2ch1a1         213 TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQI  292 (388)
T ss_dssp             EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             EEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            88889888887665432211                     012244556667777777766555656666666666666


Q ss_pred             HHHHHHhCCCccccC----CC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEE-eCCCCCHHHHH
Q psy16848        395 LRNELIQIGFPVEHT----PS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLA-PTPFHTREMID  468 (514)
Q Consensus       395 l~~~L~~~g~~~~~~----~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~-~~~~~t~e~id  468 (514)
                      ....+...++.....    ++ .++.+.++++.+..++.+.|++++||.+.+|..+.   ..+.+|++ ++..+|.|||+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~---~~~~~RIs~~g~~~t~edI~  369 (388)
T d2ch1a1         293 LYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT---FGKAWRVGIMGECSTVQKIQ  369 (388)
T ss_dssp             HHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGG---TTTEEEEECCGGGCSHHHHH
T ss_pred             HHhhhhhcccccccCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccc---cCCEEEEcCCcCCCCHHHHH
Confidence            666666554433211    22 36778898877888999999766799998776532   24589999 56677899999


Q ss_pred             HHHHHHHHHHHHcCC
Q psy16848        469 KFVTDLLAVWKSLDL  483 (514)
Q Consensus       469 ~~~~~l~~~l~~~~~  483 (514)
                      +++++|+++++....
T Consensus       370 ~ll~alke~L~~~~~  384 (388)
T d2ch1a1         370 FYLYGFKESLKATHP  384 (388)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhCC
Confidence            999999999998764

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.85  E-value=1.8e-20  Score=187.87  Aligned_cols=317  Identities=17%  Similarity=0.096  Sum_probs=217.0

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNH  111 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h  111 (514)
                      .+-.+++.+.++.-.       +.....+..+++|+++++++|.+++++++|||.|+.+++.++. +++||+|+++..++
T Consensus        13 ~~~~~~~~~~l~~g~-------~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~-~~~gdeVi~p~~t~   84 (384)
T d1b9ha_          13 DAERNGLVRALEQGQ-------WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG-VGPGTEVIVPAFTF   84 (384)
T ss_dssp             HHHHHHHHHHHHTSC-------CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSC
T ss_pred             HHHHHHHHHHHHcCC-------eeecCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC-CCCCCEEEEecccc
Confidence            344667888887511       1111236789999999999999999999999999999998874 45999999999999


Q ss_pred             hhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        112 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      .++..++...|+.++....+                                                            
T Consensus        85 ~a~~~ai~~~g~~p~~~d~~------------------------------------------------------------  104 (384)
T d1b9ha_          85 ISSSQAAQRLGAVTVPVDVD------------------------------------------------------------  104 (384)
T ss_dssp             THHHHHHHHTTCEEEEECBC------------------------------------------------------------
T ss_pred             cccccccccccccccccccc------------------------------------------------------------
Confidence            99998887777766543221                                                            


Q ss_pred             ccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCC
Q psy16848        192 GEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSM  271 (514)
Q Consensus       192 ~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~np  271 (514)
                                                                        ..++..+.+.+.+..++++++|++.+.   
T Consensus       105 --------------------------------------------------~~~~~~d~~~~~~~i~~~tk~i~~~~~---  131 (384)
T d1b9ha_         105 --------------------------------------------------AATYNLDPEAVAAAVTPRTKVIMPVHM---  131 (384)
T ss_dssp             --------------------------------------------------TTTCCBCHHHHHHHCCTTEEEECCBCG---
T ss_pred             --------------------------------------------------ccccccchhhhcccccccccccccccc---
Confidence                                                              112333344555566788999876554   


Q ss_pred             CccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CCeEEEec-HHHHHHHH
Q psy16848        272 TGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IGGYIVGT-KNFIDTIR  349 (514)
Q Consensus       272 tG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~GG~l~~~-~~~~~~l~  349 (514)
                      .|...+++++.++|+++++++|+|.++++|... .+..    .+...+..++.++.+|.++. .||+++++ +++.+.++
T Consensus       132 ~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~-~g~~----~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~  206 (384)
T d1b9ha_         132 AGLMADMDALAKISADTGVPLLQDAAHAHGARW-QGKR----VGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYET  206 (384)
T ss_dssp             GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEE----GGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhhhceeccccc-CCEe----cCcccccceecccccccccccccchhhhhhHHHHHHHH
Confidence            588889999999999999999999999977642 1211    11122455665666898854 45777654 66666654


Q ss_pred             hhcCc---------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCcccc--C--
Q psy16848        350 SYAAG---------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEH--T--  409 (514)
Q Consensus       350 ~~~~~---------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~--  409 (514)
                      .....               .++...++.+.++.+...|+.+     ++..++.+++.+++.+.|++. ++....  .  
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l-----d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~  281 (384)
T d1b9ha_         207 AFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARL-----DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRA  281 (384)
T ss_dssp             HHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTC
T ss_pred             HHHhcCCCCccccccccccccccccccccchhhhhhhhhhhc-----ccchhhhhhhhhhhhhhhhcccccccccccccc
Confidence            43211               1234567888777777777644     456777788888888989876 443211  1  


Q ss_pred             --C-CcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCC----------CCC----------------CCcEEEEEe
Q psy16848        410 --P-SHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPT----------VPV----------------GEEKIRLAP  458 (514)
Q Consensus       410 --~-~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~----------~~~----------------~~~~iRl~~  458 (514)
                        . ..++.+.++..  ...+++.+.| +++||.++....+.          ...                .++.+.+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~Rd~l~~~L-~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~  360 (384)
T d1b9ha_         282 DRNSHYMAMFRIPGLTEERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH  360 (384)
T ss_dssp             CBCCCSEEEEECTTCCHHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred             cccccccccceecccccccHHHHHHHH-HHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccC
Confidence              1 12444555432  3456799999 59999987542211          000                125788888


Q ss_pred             CCCCC-HHHHHHHHHHHHHHHHH
Q psy16848        459 TPFHT-REMIDKFVTDLLAVWKS  480 (514)
Q Consensus       459 ~~~~t-~e~id~~~~~l~~~l~~  480 (514)
                      ...+| ++|++.+++.|++++++
T Consensus       361 ~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         361 RVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Confidence            87787 57999999999998875

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.9e-21  Score=196.26  Aligned_cols=213  Identities=15%  Similarity=0.039  Sum_probs=136.2

Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCC-CCCccccCCCccCce
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEH-GAGIGERDGQLHNMD  321 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~-~~~~~~~~~~~~~~d  321 (514)
                      +...+.+.. ..+++++++++++|||||.+++   +++|.++|++|++++|+||+|....++.. ............+..
T Consensus       161 ~~~~~~~~~-~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  239 (397)
T d3tata_         161 NDLLATLKT-LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA  239 (397)
T ss_dssp             HHHHHHHTT-CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHhhh-cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCce
Confidence            333334332 2456889999999999999999   79999999999999999999994433211 000100011122457


Q ss_pred             EEEcCCcccccCCC---eEEEecHHHHHHHHhh-------cCceEeccCCcHHHHHHHHHHHHHh-----hhchHHHHHH
Q psy16848        322 IISGTLGKAFGNIG---GYIVGTKNFIDTIRSY-------AAGFIFTTSLPPTVLAGAREAIRIL-----SSQEGVELRA  386 (514)
Q Consensus       322 i~~~S~sK~lg~~G---G~l~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~  386 (514)
                      +++.|+||.++.+|   ||++++...++.....       ....  ..+.+...+.++...+...     .....+.+++
T Consensus       240 i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  317 (397)
T d3tata_         240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRN--YSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRT  317 (397)
T ss_dssp             EECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTT--TSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             EEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcc--cccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            89999999998878   9998766444332221       1111  1233444555444444311     1233455666


Q ss_pred             HHHHHHHHHHHHHHhCC----CccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCC
Q psy16848        387 KHQDIVAYLRNELIQIG----FPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPF  461 (514)
Q Consensus       387 ~~~~~~~~l~~~L~~~g----~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~  461 (514)
                      +++++++.+.+.|.+.+    +.+..+.++ |+++.+     ..+++++|++++||++.++           .|++++ .
T Consensus       318 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-----s~e~~~~L~~e~~V~l~~g-----------~Ri~~a-~  380 (397)
T d3tata_         318 RILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL-----SAAQVDRLREEFGVYLIAS-----------GRMCVA-G  380 (397)
T ss_dssp             HHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCC-----CHHHHHHHTTTTCEECCSS-----------SCCBTT-S
T ss_pred             HHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCc-----CHHHHHHHHHhCCEEeCCC-----------CEEEec-c
Confidence            67777777777776653    444455554 444443     2467888887889998753           288886 4


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy16848        462 HTREMIDKFVTDLLAVW  478 (514)
Q Consensus       462 ~t~e~id~~~~~l~~~l  478 (514)
                      .+++++++++++|++++
T Consensus       381 ~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         381 LNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             CCTTTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            67899999999998763

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=2.6e-19  Score=176.72  Aligned_cols=214  Identities=21%  Similarity=0.227  Sum_probs=168.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+-...+|++++++-|.+.+++++||..|+..++.++++  +||+|++++..|..+..-++                   
T Consensus        58 nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~--~Gd~vl~~~~~Yg~t~~l~~-------------------  116 (392)
T d1gc0a_          58 NPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLH-------------------  116 (392)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHH-------------------
T ss_pred             ChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhcc--CCCeeecccccchhhhhhhh-------------------
Confidence            467899999999999999999999999999999989877  99999999998888763321                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (392)
T d1gc0a_         117 --------------------------------------------------------------------------------  116 (392)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.++.+++..|.+.+++.+    .++|++|++|+|.||+..+.|+++|+++|+++|+++++|..+
T Consensus       117 ---------~~~~~~Gi~~~~~d~~d~~~~~~ai----~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~  183 (392)
T d1gc0a_         117 ---------HGIGEFGVKLRHVDMADLQALEAAM----TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY  183 (392)
T ss_dssp             ---------HTGGGGTCEEEEECTTCHHHHHHHC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTT
T ss_pred             ---------hhhccCCcccccCCccCHHHHHHhC----CCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCc
Confidence                     1223446667777777776666665    467999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHh--hcCceEeccCCcHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRS--YAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      +-...         ...+..++|+++.|.+|.+++.+    |.++++++.+..++.  .+...  +..+++..+..+...
T Consensus       184 atP~~---------~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~--G~~~~p~da~ll~rg  252 (392)
T d1gc0a_         184 CTPYL---------QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMT--GAVLSPHDAALLMRG  252 (392)
T ss_dssp             THHHH---------CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHT--CCCCCHHHHHHHHHH
T ss_pred             cCccc---------cChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHcc--CCcCChhhHHHHHhc
Confidence            84432         12224589999999999998744    888999887766542  22112  446788888777777


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      ++-+     ..+.++..++...+.+.|++.
T Consensus       253 l~TL-----~lRm~~~~~nA~~lA~~L~~h  277 (392)
T d1gc0a_         253 IKTL-----NLRMDRHCANAQVLAEFLARQ  277 (392)
T ss_dssp             HTTH-----HHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccH-----HHHHHHHHHHHHHHHHHHHhC
Confidence            6643     347788888889999999886

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.84  E-value=5.3e-19  Score=176.63  Aligned_cols=311  Identities=16%  Similarity=0.157  Sum_probs=209.8

Q ss_pred             HHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhh
Q psy16848         35 RKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASM  114 (514)
Q Consensus        35 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~  114 (514)
                      .+++.+.++. +.       ..+.++..+++|+.+++++|.+++++++|||.|+.++|.++. +++||+|+++..+|.++
T Consensus         4 ~~~~~~~l~~-~~-------~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~-~~~gdeVi~p~~t~~a~   74 (374)
T d1o69a_           4 LKYIEEVFKS-NY-------IAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIAS   74 (374)
T ss_dssp             HHHHHHHHHH-TT-------TSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGG
T ss_pred             HHHHHHHHhc-CC-------cCCCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEeCCcchHhh
Confidence            4667777775 11       112247789999999999999999999999999999998875 56999999999999999


Q ss_pred             hhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccC
Q psy16848        115 IQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEH  194 (514)
Q Consensus       115 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  194 (514)
                      ..++..+|+.++....++.                                                             
T Consensus        75 ~~~~~~~g~~pv~~Di~~~-------------------------------------------------------------   93 (374)
T d1o69a_          75 VAPICYLKAKPVFIDCDET-------------------------------------------------------------   93 (374)
T ss_dssp             THHHHHTTCEEEEECBCTT-------------------------------------------------------------
T ss_pred             HHHHhhccceeEecccccc-------------------------------------------------------------
Confidence            8877777666554322100                                                             


Q ss_pred             CCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCcc
Q psy16848        195 GAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGA  274 (514)
Q Consensus       195 ~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~  274 (514)
                                                                     ..........+....+++++++++.+..   |.
T Consensus        94 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~aii~~~~~---G~  123 (374)
T d1o69a_          94 -----------------------------------------------YNIDVDLLKLAIKECEKKPKALILTHLY---GN  123 (374)
T ss_dssp             -----------------------------------------------SSBCHHHHHHHHHHCSSCCCEEEEECGG---GC
T ss_pred             -----------------------------------------------cccccccccccchhcccccccccccccc---cc
Confidence                                                           0012222233334556778899987764   88


Q ss_pred             ccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCc--ccccC-CCeEEEe-cHHHHHHHHh
Q psy16848        275 ICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLG--KAFGN-IGGYIVG-TKNFIDTIRS  350 (514)
Q Consensus       275 ~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~s--K~lg~-~GG~l~~-~~~~~~~l~~  350 (514)
                      ..+++++.++|+++|++||+|.++++|..- .+.    ..+.  --|+.++||+  |.++. .||++++ ++++.+.++.
T Consensus       124 ~~d~~~i~~~~~~~~i~vIED~a~a~g~~~-~~~----~~G~--~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~  196 (374)
T d1o69a_         124 AAKMDEIVEICKENDIVLIEDAAEALGSFY-KNK----ALGT--FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARF  196 (374)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TTE----ETTS--SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHH
T ss_pred             hhhhHHHHHHhhccCcchhhhhhhhhcceE-CCe----ecCC--CCceEEEeccCccccccccceeehhhhHHHHHhhcc
Confidence            899999999999999999999999987641 111    1111  2366666775  88865 3466655 4677777654


Q ss_pred             hcCc------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC-Cc-cc---cCCCcE
Q psy16848        351 YAAG------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG-FP-VE---HTPSHI  413 (514)
Q Consensus       351 ~~~~------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-~~---~~~~~~  413 (514)
                      ....            .++...++...++.+...|+.+.     +..++.++.++++.+.|.+.. +. ..   .+...+
T Consensus       197 ~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~-----~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~  271 (374)
T d1o69a_         197 YSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE-----QRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWL  271 (374)
T ss_dssp             HTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH-----HHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSS
T ss_pred             ccccccccccccccccCCccccccchhhhhhHHHHhhhh-----hhcchhHHHHHHHHhhccccccccccccCCCCChhh
Confidence            4321            23455788888888888887553     355666677778888887651 11 10   011111


Q ss_pred             EEEEeC---------------------CCccHHHHHHHHHHhCCeEEecccCCCC-------------CC----CCcEEE
Q psy16848        414 IPIKIG---------------------NPALNTKICDMLLKEKGHYVQPINYPTV-------------PV----GEEKIR  455 (514)
Q Consensus       414 ~~i~l~---------------------~~~~~~~~~~~Ll~~~GI~v~~~~~~~~-------------~~----~~~~iR  455 (514)
                      ..+.+.                     ......++.+.| +++||.+++...+..             +.    ..+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~  350 (374)
T d1o69a_         272 STALINFDKNELNACQKDINISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGIC  350 (374)
T ss_dssp             EEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEE
T ss_pred             eeeeeccccccccccccccccchhhccchhhHHHHHHHH-HHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEE
Confidence            111111                     122467788889 599999876543210             00    135788


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        456 LAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       456 l~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.++..+|++|++.+++.|.+++
T Consensus       351 LP~~~~lt~~di~~I~~~I~~~l  373 (374)
T d1o69a_         351 LPSGTAMSKDDVYEISKLILKSI  373 (374)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHH
Confidence            88888899999999999999876

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.1e-20  Score=184.62  Aligned_cols=221  Identities=14%  Similarity=0.168  Sum_probs=163.4

Q ss_pred             hhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcC--CEEEEeccccccccCCCCCCccccCCCccCceE
Q psy16848        245 VNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDI  322 (514)
Q Consensus       245 ~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g--v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di  322 (514)
                      .+.+++.+.+   ++++++++.+.+|.||...|++++.+.|++++  +++++|.++++|..        +.+...+++|+
T Consensus       124 ~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~--------pid~~~~giD~  192 (382)
T d2bkwa1         124 LELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE--------EFEFDEWGVDF  192 (382)
T ss_dssp             HHHHHHHHHH---SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS--------CCCTTTTTCSE
T ss_pred             hhHHHHHhhh---ccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccc--------cccccccCeeE
Confidence            4444444443   45789999999999999999999999998874  99999999998765        33333458999


Q ss_pred             EEcCCcccc-cCCC-eEEEecHHHHHHHHhhcCc------------------------eEeccCCcHHHHHHHHHHHHHh
Q psy16848        323 ISGTLGKAF-GNIG-GYIVGTKNFIDTIRSYAAG------------------------FIFTTSLPPTVLAGAREAIRIL  376 (514)
Q Consensus       323 ~~~S~sK~l-g~~G-G~l~~~~~~~~~l~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~  376 (514)
                      +++|.+|++ |++| |+++.++++++.+......                        ..+..+.+.....++..+|+.+
T Consensus       193 ~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~  272 (382)
T d2bkwa1         193 ALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI  272 (382)
T ss_dssp             EEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             EeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH
Confidence            999999999 6778 9999999888766432211                        0012256667788889999988


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHhC-CCccc---cC--C-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCC
Q psy16848        377 SSQEGVELRAKHQDIVAYLRNELIQI-GFPVE---HT--P-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPV  449 (514)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~--~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~  449 (514)
                      .+++++.+.++.+++.+++++.+.+. ++...   ..  . ..++.+.+++   ..++.+.| +++||.+..|..+  ..
T Consensus       273 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~---~~~~~~~L-~~~gi~i~~G~~~--~~  346 (382)
T d2bkwa1         273 LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---PPDVIAFL-KSHGVVIAGGIHK--DI  346 (382)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---HHHHHHHH-HHTTEECBCCCCT--TT
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC---HHHHHHHH-HHCCeEEECCCCh--hh
Confidence            88888888899999999999998764 33222   11  1 2355677765   46777777 6999999876542  23


Q ss_pred             CCcEEEEE-eCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        450 GEEKIRLA-PTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       450 ~~~~iRl~-~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      +.+.+|++ ++...++++++.+++.|+.+.+.++
T Consensus       347 ~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~  380 (382)
T d2bkwa1         347 GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ  380 (382)
T ss_dssp             GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred             cCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence            35789999 6656677889999998887776664

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.83  E-value=3.9e-19  Score=177.39  Aligned_cols=315  Identities=15%  Similarity=0.129  Sum_probs=216.2

Q ss_pred             hhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccc-cCCCceEEecCcc
Q psy16848         32 KGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGK-MIPGLHYISDAGN  110 (514)
Q Consensus        32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~-~~~gd~v~~~~~~  110 (514)
                      ++-.+++.+.++. +      .+.  .++..+++|+++++++|.+++++++|||.|+.+++.++.- .+++|+|+++..+
T Consensus        12 ~~~~~~v~~~l~~-~------~~~--~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t   82 (371)
T d2fnua1          12 KEDKKAVLEVLNS-K------QLT--QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS   82 (371)
T ss_dssp             HHHHHHHHHHHTS-S------CCS--SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred             HHHHHHHHHHHcC-C------Ccc--CCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccccc
Confidence            4445677777754 1      112  2477899999999999999999999999999999988752 2345689999999


Q ss_pred             chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        111 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       111 h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      +.++..++..+|+.++....+.                                                          
T Consensus        83 ~~a~~~ai~~~G~~pv~vDi~~----------------------------------------------------------  104 (371)
T d2fnua1          83 FVATANMLLESGYTPVFAGIKN----------------------------------------------------------  104 (371)
T ss_dssp             CTHHHHHHHHTTCEEEECCBCT----------------------------------------------------------
T ss_pred             ccccceeeeccCcccccccccc----------------------------------------------------------
Confidence            9999988888888777553210                                                          


Q ss_pred             cccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCC
Q psy16848        191 YGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHS  270 (514)
Q Consensus       191 ~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~n  270 (514)
                                                                          +.+ .....+++..++++++|++.+.  
T Consensus       105 ----------------------------------------------------~~~-~~~~~~~~~~~~~t~avi~vh~--  129 (371)
T d2fnua1         105 ----------------------------------------------------DGN-IDELALEKLINERTKAIVSVDY--  129 (371)
T ss_dssp             ----------------------------------------------------TSS-BCGGGSGGGCCTTEEEEEEECG--
T ss_pred             ----------------------------------------------------ccc-ccchhhhhhccchhhccccccc--
Confidence                                                                000 1112234556778999998875  


Q ss_pred             CCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CCeEEEec-HHHHHHH
Q psy16848        271 MTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IGGYIVGT-KNFIDTI  348 (514)
Q Consensus       271 ptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~GG~l~~~-~~~~~~l  348 (514)
                       .|...++++|.++|+++|+++|+|.+|++|..-. +    ...+...+..++.+..+|.++. .||+++++ +++.+.+
T Consensus       130 -~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~-~----~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~  203 (371)
T d2fnua1         130 -AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQ-N----KKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKM  203 (371)
T ss_dssp             -GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEET-T----EETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHH
T ss_pred             -cccccccccccccccccchhhccchhhccCceec-c----ccCCccccccccccccccccccccceEEEeechhhhhhc
Confidence             4999999999999999999999999999876411 1    1112112344454444798865 34777665 6777777


Q ss_pred             HhhcCc--------------eEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccccC----
Q psy16848        349 RSYAAG--------------FIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVEHT----  409 (514)
Q Consensus       349 ~~~~~~--------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----  409 (514)
                      +.....              .++...++...++.+...|+.+     ++..++.++..+++.+.|.+. ++....+    
T Consensus       204 ~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l-----~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~  278 (371)
T d2fnua1         204 KLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA-----PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKD  278 (371)
T ss_dssp             HHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSS
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhhhc-----cchhhhhhhhhhhhccccccccccccccccccc
Confidence            654321              1345578888888888877654     346666777777888888876 3322111    


Q ss_pred             --CCcEEEEEeCCC--ccHHHHHHHHHHhCCeEEecccCCCC---------CCC---------CcEEEEEeCCCCCHHHH
Q psy16848        410 --PSHIIPIKIGNP--ALNTKICDMLLKEKGHYVQPINYPTV---------PVG---------EEKIRLAPTPFHTREMI  467 (514)
Q Consensus       410 --~~~~~~i~l~~~--~~~~~~~~~Ll~~~GI~v~~~~~~~~---------~~~---------~~~iRl~~~~~~t~e~i  467 (514)
                        ....+.+.+.+.  ....++.+.| +++||.+++...|..         ..+         .+.+.+.++..+|++|+
T Consensus       279 ~~~~~~~~i~~~~~~~~~r~~~~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di  357 (371)
T d2fnua1         279 KSSNHLYPILMHQKFFTCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESV  357 (371)
T ss_dssp             CCCCSCEEEEECGGGGGGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred             ccccccccccccccchhHHHHHHHHH-HHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHH
Confidence              112455555532  3356788888 599999875432210         011         25788888888999999


Q ss_pred             HHHHHHHHHHHHH
Q psy16848        468 DKFVTDLLAVWKS  480 (514)
Q Consensus       468 d~~~~~l~~~l~~  480 (514)
                      +++++.+.+++++
T Consensus       358 ~~I~~~i~~~~~~  370 (371)
T d2fnua1         358 QNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999998875

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.1e-19  Score=174.75  Aligned_cols=342  Identities=16%  Similarity=0.164  Sum_probs=233.5

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHHHH----HHHHhHcCCCcE-EEEeccccccccch
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEKLE----EDVAKLHQKEAG-LVFTSCYVANDSTL   92 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~la~~~~~~~~-i~~~sGt~a~~~~l   92 (514)
                      ..|++-...-...|.+.+++...+. +|+.++++.+++.|. +..+++|    ++..++||.+++ +-..||+.||++++
T Consensus        27 ~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~  105 (416)
T d1dfoa_          27 EHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGC-EYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVY  105 (416)
T ss_dssp             HSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHH
T ss_pred             cCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCC-hhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHH
Confidence            4565533333335888888877774 677777777776665 3344443    667778999876 44789999999999


Q ss_pred             hhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhh
Q psy16848         93 FTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEV  172 (514)
Q Consensus        93 ~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
                      .++++  |||.|+.-+..|..-+............                                             
T Consensus       106 ~All~--pGD~Il~l~l~~GGHlshg~~~~~~g~~---------------------------------------------  138 (416)
T d1dfoa_         106 TALLE--PGDTVLGMNLAHGGHLTHGSPVNFSGKL---------------------------------------------  138 (416)
T ss_dssp             HHHCC--TTCEEEEECTTTTCCGGGTCTTSHHHHH---------------------------------------------
T ss_pred             HHhcC--CCCeeeeccccccccccccccccccCce---------------------------------------------
Confidence            99977  9999999998887766332111110000                                             


Q ss_pred             hhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec-----CCChhH
Q psy16848        173 SHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR-----HNDVNH  247 (514)
Q Consensus       173 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~-----~~d~~~  247 (514)
                                                                                    -+.+.++     .-|++.
T Consensus       139 --------------------------------------------------------------~~~~~y~~d~~~~IDyd~  156 (416)
T d1dfoa_         139 --------------------------------------------------------------YNIVPYGIDATGHIDYAD  156 (416)
T ss_dssp             --------------------------------------------------------------SEEEEECBCSSSSBCHHH
T ss_pred             --------------------------------------------------------------EEEEecccCCccCccHHH
Confidence                                                                          0111111     127777


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCC
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  327 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~  327 (514)
                      +++..++.   ++++|++..-.  .....|+++++++|++.|.++++|.+|..|.....-  +...   ....|++++|.
T Consensus       157 l~~~a~~~---kPklIi~G~S~--y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~--~~sP---~~~aDvvt~tT  226 (416)
T d1dfoa_         157 LEKQAKEH---KPKMIIGGFSA--YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGV--YPNP---VPHAHVVTTTT  226 (416)
T ss_dssp             HHHHHHHH---CCSEEEEECSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCC---TTTSSEEEEES
T ss_pred             HHHHHHHh---ccceEEecccc--cccccCHHHHHHHHHhcCceEEcchhhhhcceeccc--cCCc---ccccceeeeeh
Confidence            77777765   46788776433  446778999999999999999999999977652110  1111   23579999999


Q ss_pred             cccc-cCCCeEEEec---HHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        328 GKAF-GNIGGYIVGT---KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       328 sK~l-g~~GG~l~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                      ||++ |+.||+++.+   +++.+.+.....+...+ +......++...++.....+...+..+++.++++.|.+.|.+.|
T Consensus       227 hKtlrGPrggiI~~~~~~~~~~~~i~~avfPg~qg-gp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G  305 (416)
T d1dfoa_         227 HKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQG-GPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERG  305 (416)
T ss_dssp             SSTTCCCSCEEEEESSCCHHHHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcccCCCceEEEeccchHhHHHHHHhhhCccccc-CccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999 5678998875   56777776544333222 23334444445555554456667889999999999999999999


Q ss_pred             Ccccc--CCCcEEEEEeCCC-ccHHHHHHHHHHhCCeEEecccCCCCC---CCCcEEEEEeC----CCCCHHHHHHHHHH
Q psy16848        404 FPVEH--TPSHIIPIKIGNP-ALNTKICDMLLKEKGHYVQPINYPTVP---VGEEKIRLAPT----PFHTREMIDKFVTD  473 (514)
Q Consensus       404 ~~~~~--~~~~~~~i~l~~~-~~~~~~~~~Ll~~~GI~v~~~~~~~~~---~~~~~iRl~~~----~~~t~e~id~~~~~  473 (514)
                      +.++.  +..+++.+.+.+. .+..+..+.| ++.||.+..-..|+.+   ..++.||+..+    ..+.++|++++.+.
T Consensus       306 ~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~L-e~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~  384 (416)
T d1dfoa_         306 YKVVSGGTDNHLFLVDLVDKNLTGKEADAAL-GRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGW  384 (416)
T ss_dssp             CEEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred             cccccCCCCCceeEEEecccCCCHHHHHHHH-HHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHH
Confidence            99873  4667888887542 3445555556 7999998754443322   23678999875    56788999999999


Q ss_pred             HHHHHHHcC
Q psy16848        474 LLAVWKSLD  482 (514)
Q Consensus       474 l~~~l~~~~  482 (514)
                      |.++++...
T Consensus       385 I~~~l~~~~  393 (416)
T d1dfoa_         385 MCDVLDSIN  393 (416)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHcCC
Confidence            999988653

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.83  E-value=9.8e-19  Score=172.86  Aligned_cols=244  Identities=18%  Similarity=0.169  Sum_probs=179.7

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+-...||++++++-|.+.+++++||..|+..++.++++  +||+|++....|.....-++.                  
T Consensus        66 nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~--~Gd~iv~~~~~Yg~t~~l~~~------------------  125 (398)
T d1qgna_          66 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIET------------------  125 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHH------------------
T ss_pred             ChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhccc--ccccccccccccchhhhhhcc------------------
Confidence            577899999999999999999999999999999988876  999999999988887633211                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (398)
T d1qgna_         126 --------------------------------------------------------------------------------  125 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                .+...|.++.+++..+.+..++.+   ..+++++|++|+|.||+..+.|+++|.++|+++|+++|+|...
T Consensus       126 ----------~~~~~gi~~~~~~~~~~~~~~~~~---~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~  192 (398)
T d1qgna_         126 ----------ILPKMGITATVIDPADVGALELAL---NQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTF  192 (398)
T ss_dssp             ----------TGGGGTCEEEEECSSCHHHHHHHH---HHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             ----------cccccccccccccccchhhhhhhh---ccccceEEEccCccccccccchHHHHHHHHhhcCCEEEeccee
Confidence                      112234455555544444333333   2356899999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIR  374 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~  374 (514)
                      +-...         ...+..++|+++.|.+|.+++.+    |++..+++.+..++.....+  +..+++..+..+...++
T Consensus       193 atP~~---------~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~--G~~l~p~~a~ll~rgl~  261 (398)
T d1qgna_         193 ATPLN---------QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHIL--GGALNPNAAYLIIRGMK  261 (398)
T ss_dssp             TCTTT---------CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHGG
T ss_pred             ecccc---------CCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccC--CCcCCHHHHHHHHhcch
Confidence            73322         12234589999999999998744    88888988888877665444  44678887777766665


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHhC-CCc-cc-----------------cCCCcEEEEEeCCC-ccHHHHHHHH
Q psy16848        375 ILSSQEGVELRAKHQDIVAYLRNELIQI-GFP-VE-----------------HTPSHIIPIKIGNP-ALNTKICDML  431 (514)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-----------------~~~~~~~~i~l~~~-~~~~~~~~~L  431 (514)
                      -+     .-+.++..+++..+.+.|++. .+. +.                 ...+.++.+.+... .....|++.|
T Consensus       262 TL-----~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L  333 (398)
T d1qgna_         262 TL-----HLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDAL  333 (398)
T ss_dssp             GH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHC
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcC
Confidence            33     347788889999999999886 222 10                 11255788877532 3344566655

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=8e-19  Score=173.04  Aligned_cols=212  Identities=12%  Similarity=0.030  Sum_probs=158.8

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcC--CEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccc-cC
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHG--ALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAF-GN  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~g--v~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~l-g~  333 (514)
                      .++++.+++++..+.+|...|+++|.++|++++  .++++|.++++|..        +.+-..++.|++++|.+|++ |+
T Consensus       118 ~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~--------~i~~d~~~iD~~~~~sqK~l~gp  189 (348)
T d1iuga_         118 KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVG--------EVALEAMGVDAAASGSQKGLMCP  189 (348)
T ss_dssp             CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB--------CCCSGGGTCSEEEEESSSTTCCC
T ss_pred             ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhccccc--------ccccccccCCEEEeccccceecC
Confidence            456789999999999999999999999999985  78999999997764        22222357999999999999 77


Q ss_pred             CC-eEEEecHHHHHHHHhhcCce------------EeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q psy16848        334 IG-GYIVGTKNFIDTIRSYAAGF------------IFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELI  400 (514)
Q Consensus       334 ~G-G~l~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  400 (514)
                      +| |+++.+++.++.+++....+            .+..+.+...+.++.++|+.+..+ ..+..++.+...+.+.+.++
T Consensus       190 pG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~  268 (348)
T d1iuga_         190 PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGE  268 (348)
T ss_dssp             SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhh
Confidence            88 99999998887654321110            012255677788889999877544 34444444445555666666


Q ss_pred             hCCCccccC-CC-cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        401 QIGFPVEHT-PS-HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       401 ~~g~~~~~~-~~-~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      +.|+...+. .+ .+..+.+|++.+..++.+.| +++||.+.+|..+   .....+|++.-...+.+|+++++++|++++
T Consensus       269 ~~gl~~~~~~~s~~v~~~~~P~g~~~~~~~~~l-~~~gi~i~~G~~~---l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l  344 (348)
T d1iuga_         269 EGGLRPVPKRFSPAVAAFYLPEGVPYARVKEAF-AQRGAVIAGGQGP---LKGKVFRLSLMGAYDRYEALGVAGMFREVL  344 (348)
T ss_dssp             HTTCEESCSSBCTTCEEEECCTTCCHHHHHHHH-HTTTEECEECCGG---GTTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred             hhhhccChhhcCCeEEEEECCCCCCHHHHHHHH-HHCCeEEEcCccc---cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            667766432 22 26778998877888999888 5999999877643   234689998766889999999999999999


Q ss_pred             HHc
Q psy16848        479 KSL  481 (514)
Q Consensus       479 ~~~  481 (514)
                      +++
T Consensus       345 ~~~  347 (348)
T d1iuga_         345 EEI  347 (348)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.83  E-value=8.1e-19  Score=170.89  Aligned_cols=341  Identities=19%  Similarity=0.189  Sum_probs=232.2

Q ss_pred             eeeec-ccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHHHH----HHHHhHcCCCcE-EEEeccccccccc
Q psy16848         19 VTCRL-SSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEKLE----EDVAKLHQKEAG-LVFTSCYVANDST   91 (514)
Q Consensus        19 ~~~d~-~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~la~~~~~~~~-i~~~sGt~a~~~~   91 (514)
                      ..+.+ +|.+| ..|.+.++....+. +|..++++.+++.|. +..+++|    +++.++|+.+++ +-..||+.||+++
T Consensus        24 ~~l~LiaSEN~-~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~-~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av  101 (405)
T d1kl1a_          24 AKIELIASENF-VSRAVMEAQGSVLTNKYAEGYPGRRYYGGC-EYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAV  101 (405)
T ss_dssp             HSEECCTTCCC-CCHHHHHHHTSGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHH
T ss_pred             cCceEeccCCc-CCHHHHHHhcCcccCcCcCCCCCccccCCc-hhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHH
Confidence            45666 34444 35888888877774 677667777766664 4555554    667788999876 5568999999999


Q ss_pred             hhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhh
Q psy16848         92 LFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCE  171 (514)
Q Consensus        92 l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
                      +.++.+  |||+|+.-+..+..-+.--......                                               
T Consensus       102 ~~all~--pGD~im~l~l~~GGHlshg~~~~~~-----------------------------------------------  132 (405)
T d1kl1a_         102 YFTVLE--HGDTVLGMNLSHGGHLTHGSPVNFS-----------------------------------------------  132 (405)
T ss_dssp             HHHHCC--TTCEEEEECGGGTCCGGGTCTTSHH-----------------------------------------------
T ss_pred             HHHhcC--CCCEEEEeecccccccccCcccccc-----------------------------------------------
Confidence            999977  9999998887766544211000000                                               


Q ss_pred             hhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CCCh
Q psy16848        172 VSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HNDV  245 (514)
Q Consensus       172 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~d~  245 (514)
                                                                                  ....+.+.++      .-|+
T Consensus       133 ------------------------------------------------------------g~~~~~~~y~~d~~~~~ID~  152 (405)
T d1kl1a_         133 ------------------------------------------------------------GVQYNFVAYGVDPETHVIDY  152 (405)
T ss_dssp             ------------------------------------------------------------HHHSEEEEECBCTTTCSBCH
T ss_pred             ------------------------------------------------------------ceEEEEEEeccchhcccccH
Confidence                                                                        0001122222      1267


Q ss_pred             hHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEc
Q psy16848        246 NHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISG  325 (514)
Q Consensus       246 ~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~  325 (514)
                      +.+++..++.   ++++|++..-..|  ...|+++++++|++.|.+|+.|.+|..|.....-  +...   ...+|++++
T Consensus       153 d~l~~~a~~~---kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~--~~~P---~~~aDvvt~  222 (405)
T d1kl1a_         153 DDVREKARLH---RPKLIVAAASAYP--RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP---VPYAHFVTT  222 (405)
T ss_dssp             HHHHHHHHHH---CCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS---TTTCSEEEE
T ss_pred             HHHHHHHHhh---CcceEEecccccc--cccChHHHHHHHhhhCCEEecchhhHhhhhhhhh--cCCh---hhhhhheec
Confidence            7777777765   3677777654433  5667999999999999999999999977652110  1111   236899999


Q ss_pred             CCcccc-cCCCeEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16848        326 TLGKAF-GNIGGYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGF  404 (514)
Q Consensus       326 S~sK~l-g~~GG~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  404 (514)
                      |.||++ |+.||+++.++++.+.+.....+...+ +......++...++.....+...+..+++.++++.|.+.|.+.|+
T Consensus       223 tThKtlrGPrgg~I~~~~~~~~~i~~avfPg~qg-gp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~  301 (405)
T d1kl1a_         223 TTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQG-GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF  301 (405)
T ss_dssp             ESSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccCCCCceEEecchhHHHHHhhhCccccc-CcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999 667899999999888887655443222 223333444444454433556678889999999999999999999


Q ss_pred             cccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCCC---CCCcEEEEEeC----CCCCHHHHHHHHHHH
Q psy16848        405 PVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTVP---VGEEKIRLAPT----PFHTREMIDKFVTDL  474 (514)
Q Consensus       405 ~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~~---~~~~~iRl~~~----~~~t~e~id~~~~~l  474 (514)
                      .++.  +..+++.+.+.. +.+..+..+.| ++.||.+..-..|+.+   ...+.||+..+    ..+.++|++++.+.|
T Consensus       302 ~vv~ggTd~H~vlvdl~~~~~~g~~ae~~L-e~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I  380 (405)
T d1kl1a_         302 TLVSGGTDNHLLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII  380 (405)
T ss_dssp             EEGGGSCSSSEEEEECGGGTCCHHHHHHHH-HHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred             eeecCCCccceeeccccccCCcHHHHHHHH-HHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHH
Confidence            9874  366788888754 23344444445 7899998744433322   23578999875    567889999999999


Q ss_pred             HHHHHHcC
Q psy16848        475 LAVWKSLD  482 (514)
Q Consensus       475 ~~~l~~~~  482 (514)
                      .++++...
T Consensus       381 ~~~l~~~~  388 (405)
T d1kl1a_         381 GLVLKNVG  388 (405)
T ss_dssp             HHHHTCTT
T ss_pred             HHHHhcCC
Confidence            99887543

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.2e-19  Score=186.81  Aligned_cols=343  Identities=13%  Similarity=0.025  Sum_probs=211.8

Q ss_pred             cCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCc---------eEEecCccchhhhhhhhcCCCCee
Q psy16848         56 SGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGL---------HYISDAGNHASMIQGIRNSSAPKI  126 (514)
Q Consensus        56 ~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd---------~v~~~~~~h~~~~~~~~~~~~~~~  126 (514)
                      ||..+...+|++++++++|.+++++++|||+||+.++.++.+  +|+         .++.+..+|.....++..+|..++
T Consensus        70 Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~--~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~  147 (467)
T d2v1pa1          70 FSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK--KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR  147 (467)
T ss_dssp             SSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHH--HHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEE
T ss_pred             hcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhh--ccceEecCCCCcEEEEecccccccHHHHHHcCCeee
Confidence            445677899999999999999999999999999999999875  444         455555566666666666676655


Q ss_pred             eccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchh
Q psy16848        127 IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLH  206 (514)
Q Consensus       127 ~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~  206 (514)
                      ..........                                                      ..              
T Consensus       148 ~~~~~~~~~~------------------------------------------------------~~--------------  159 (467)
T d2v1pa1         148 NVYIKEAFDT------------------------------------------------------GV--------------  159 (467)
T ss_dssp             ECBCTTTTCT------------------------------------------------------TS--------------
T ss_pred             eccccccccc------------------------------------------------------cc--------------
Confidence            4433100000                                                      00              


Q ss_pred             hHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccc-cC---HHHHH
Q psy16848        207 NMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAI-CP---LKELC  282 (514)
Q Consensus       207 ~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~-~~---l~~l~  282 (514)
                                                   ........|.+.+++.+++...++++++++++.+|..|.. ++   +++|+
T Consensus       160 -----------------------------~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~  210 (467)
T d2v1pa1         160 -----------------------------RYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMY  210 (467)
T ss_dssp             -----------------------------CCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHH
T ss_pred             -----------------------------ccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHH
Confidence                                         0000012377888888887766678899999999876544 44   79999


Q ss_pred             HHHHHcCCEEEEecccccccc--------CCCCCCccccC-CCccCceEEEcCCcccccC-CCeEEEecHHHH-HHHHhh
Q psy16848        283 EVSHQHGALTFVDEVHAVGLY--------GEHGAGIGERD-GQLHNMDIISGTLGKAFGN-IGGYIVGTKNFI-DTIRSY  351 (514)
Q Consensus       283 ~l~~~~gv~li~Dea~~~g~~--------g~~~~~~~~~~-~~~~~~di~~~S~sK~lg~-~GG~l~~~~~~~-~~l~~~  351 (514)
                      ++|++||++||+|+++.++..        +..+.++.+.. ......|++++|.+|.++. .||+++.+++.+ ......
T Consensus       211 ~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~  290 (467)
T d2v1pa1         211 SIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTEC  290 (467)
T ss_dssp             HHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHH
T ss_pred             HHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhh
Confidence            999999999999999975431        11111111000 0123579999999999866 347777665433 222211


Q ss_pred             ------cCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCccccCCCcEEEEE----eCC-
Q psy16848        352 ------AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEHTPSHIIPIK----IGN-  420 (514)
Q Consensus       352 ------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~i~----l~~-  420 (514)
                            ..++......+...+++....+.....   .+..++..++.+++.+.|.+.++.+.+...+...+.    ++. 
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~  367 (467)
T d2v1pa1         291 RTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHI  367 (467)
T ss_dssp             HHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTS
T ss_pred             cccccccccCcchhhhHHHHHHHHHHHhHHhhh---HHHHHHHHHHHHHHHHHHHhcCCcccCCCccceeecchhhcCCc
Confidence                  111111223444444444444543322   246667778889999999998776654444322221    121 


Q ss_pred             ---CccHHHHHHHHHHhCCeEEeccc----------CCCCCCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCccC
Q psy16848        421 ---PALNTKICDMLLKEKGHYVQPIN----------YPTVPVGEEKIRLAPT-PFHTREMIDKFVTDLLAVWKSLDLPLS  486 (514)
Q Consensus       421 ---~~~~~~~~~~Ll~~~GI~v~~~~----------~~~~~~~~~~iRl~~~-~~~t~e~id~~~~~l~~~l~~~~~~~~  486 (514)
                         ..........++.+.||......          ....+.....+|++++ ..+|+||+|.++++|++++++...-.+
T Consensus       368 ~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~i~~  447 (467)
T d2v1pa1         368 PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKG  447 (467)
T ss_dssp             CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGGCCC
T ss_pred             chhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence               12234455556568898664221          1111234578999876 466999999999999999986543332


Q ss_pred             CcchhhHhHHHHHH
Q psy16848        487 GLTCAQVNILLFII  500 (514)
Q Consensus       487 ~~~~~~~~~~~~~~  500 (514)
                      .....+.++++.|.
T Consensus       448 l~~~~e~~~lr~f~  461 (467)
T d2v1pa1         448 LTFTYEPKVLRHFT  461 (467)
T ss_dssp             EEEEECCSSSHHHH
T ss_pred             ceeccCccccchhh
Confidence            22334566666544

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.82  E-value=1.3e-19  Score=184.90  Aligned_cols=300  Identities=13%  Similarity=0.012  Sum_probs=195.0

Q ss_pred             HHHHHHHHhHcCCCcE-EEEecccc-ccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHH
Q psy16848         63 EKLEEDVAKLHQKEAG-LVFTSCYV-ANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVL  140 (514)
Q Consensus        63 ~~~~~~la~~~~~~~~-i~~~sGt~-a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l  140 (514)
                      .++...+++++|.+.. .++.+||. ++.+++.+.....+++.|+++...|.++..+++.+|..++.++..         
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~---------  186 (434)
T d2z67a1         116 NKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV---------  186 (434)
T ss_dssp             HHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE---------
T ss_pred             HHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEee---------
Confidence            3444567788887664 44444544 456666665444488999999999999999999998887655320         


Q ss_pred             HhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCce
Q psy16848        141 ENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEV  220 (514)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v  220 (514)
                                  .++                                       ..+                       
T Consensus       187 ------------~~~---------------------------------------~~~-----------------------  192 (434)
T d2z67a1         187 ------------LDG---------------------------------------DRV-----------------------  192 (434)
T ss_dssp             ------------EET---------------------------------------TEE-----------------------
T ss_pred             ------------cCC---------------------------------------Ccc-----------------------
Confidence                        000                                       000                       


Q ss_pred             eeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc-CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc
Q psy16848        221 AIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD-VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA  299 (514)
Q Consensus       221 ~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~-~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~  299 (514)
                                           ..|.+.+++.+++.. .+++.+|+++++++++|.+.|+++|.++|++||+++++|++|+
T Consensus       193 ---------------------~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g  251 (434)
T d2z67a1         193 ---------------------YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA  251 (434)
T ss_dssp             ---------------------ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred             ---------------------CCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccch
Confidence                                 114555556655432 3457789999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEE-ecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHh
Q psy16848        300 VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIV-GTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRIL  376 (514)
Q Consensus       300 ~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~  376 (514)
                      .+......  .....+ ..++|++++|+||.++. .| |++. .++++++.+.......  + +.+  ....+.+++..+
T Consensus       252 ~~~~~~~~--~~~~~~-~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~-~~~--~~~~~~a~l~~~  323 (434)
T d2z67a1         252 IQNNYYLE--KLKKAF-KYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR--A-SAT--PVVNTLVSLLSM  323 (434)
T ss_dssp             TTCHHHHH--HHHHHH-TSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC--B-CSH--HHHHHHHHHHHH
T ss_pred             hhhhhccc--cccccc-cCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhcccc--c-ccc--hHHHHHHHHHHH
Confidence            43210000  000111 34789999999998865 34 5554 4567777776554332  1 222  222233334444


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHhC----CCccccCCCc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCC-----
Q psy16848        377 SSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTPSH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPT-----  446 (514)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~-----  446 (514)
                      ...+..+..++..++.+++.+.|+++    +.++...... .+.+.+.  .+..++...|. ++||.......+.     
T Consensus       324 ~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~--~~~~~l~~~L~-~~gI~g~~v~~~l~~~g~  400 (434)
T d2z67a1         324 GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVN--SDPVEIAAKLY-NLRVTGPRGIKKTDHFGN  400 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECS--SCHHHHHHHHH-HTTEESCEEECTTCHHHH
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecC--CCHHHHHHHHH-HcCCeeeehhhhccccCe
Confidence            44566677788888888888888764    5655544333 3334433  34778888885 9999654222211     


Q ss_pred             ---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        447 ---VPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       447 ---~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                         .....+++|++++..+|+||||+++++|+++
T Consensus       401 ~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         401 CYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             TCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             eeecccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence               1112578999999999999999999999863

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=8.7e-19  Score=172.59  Aligned_cols=287  Identities=17%  Similarity=0.188  Sum_probs=199.6

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+-.+.+|++++++-|.+.++.++||-.|+ .++.++++  +||+|++....|..+...++.                  
T Consensus        48 nPt~~~le~~la~LE~~~~a~~fsSGMaAi-sall~ll~--~Gd~vv~~~~~Yg~t~~l~~~------------------  106 (380)
T d1ibja_          48 NPTRDALESLLAKLDKADRAFCFTSGMAAL-SAVTHLIK--NGEEIVAGDDVYGGSDRLLSQ------------------  106 (380)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHH-HHHHTTSC--TTCEEEEESSCCHHHHHHHHH------------------
T ss_pred             ChHHHHHHHHHHHHcCCceEEehhhHHHHH-HHHHHhhC--CCCEEEEEecccccccchhhh------------------
Confidence            567899999999999999999999998776 46666765  999999999998887633221                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (380)
T d1ibja_         107 --------------------------------------------------------------------------------  106 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                                .+...|.++.+++..+.+.+++.+    .++|++|++|+|.||+..+.|+++|+++|+++|+++|+|+..
T Consensus       107 ----------~~~~~gi~~~~~d~~~~~~~~~ai----~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~  172 (380)
T d1ibja_         107 ----------VVPRSGVVVKRVNTTKLDEVAAAI----GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSI  172 (380)
T ss_dssp             ----------TSGGGTCEEEEECTTSHHHHHHHC----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTT
T ss_pred             ----------hhccccccccccCcchHHHHHHHh----ccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccc
Confidence                      122335566667666776666655    457999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +-...         ...+..++|+++.|.+|.+++.+    |.++.+ +.+.+.+......+  +..+++..+..+...+
T Consensus       173 atP~~---------~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~--G~~l~p~~a~ll~rgl  241 (380)
T d1ibja_         173 MSPVL---------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE--GSGLAPFDCWLCLRGI  241 (380)
T ss_dssp             TCTTT---------CCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHT--TCBCCHHHHHHHHHHH
T ss_pred             ccccc---------ccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhcccc--CCcCCHHHHHHHHhcc
Confidence            73322         12234589999999999998744    777655 55666665554333  4467888887777776


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCCccHHHHHHHHHHh
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNPALNTKICDMLLKE  434 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~~~~~~~~~~Ll~~  434 (514)
                      +.+     ..+.++..+++..+.+.|++. .+..+                  ...+.++.+.+.+......|.+.| +-
T Consensus       242 ~Tl-----~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l-~l  315 (380)
T d1ibja_         242 KTM-----ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT-KY  315 (380)
T ss_dssp             TTH-----HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHC-SS
T ss_pred             hhh-----hhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhC-Cc
Confidence            643     347788889999999999886 22210                  112346777776554455666655 21


Q ss_pred             CCeEEe----------cccC--CCCC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Q psy16848        435 KGHYVQ----------PINY--PTVP--------VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       435 ~GI~v~----------~~~~--~~~~--------~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      -.+.++          |...  ...+        ..++.||++++.    |+.|.+++-|++.++.+
T Consensus       316 ~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----E~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         316 FSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             SEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred             CeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc----CCHHHHHHHHHHHHHhc
Confidence            111111          1110  0001        125789999994    45566677777777654

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.4e-18  Score=167.54  Aligned_cols=214  Identities=13%  Similarity=0.126  Sum_probs=163.9

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+....+|++++++-|.+.++.++||-.|+..++.++++  +||+|++++..|.....-+.                   
T Consensus        49 nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~--~gd~vv~~~~~yg~t~~~~~-------------------  107 (384)
T d1cs1a_          49 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFD-------------------  107 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHH-------------------
T ss_pred             CHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhccc--ccceecccccccchhhhhhh-------------------
Confidence            477899999999999999999999999999888888877  99999999888877653221                   


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (384)
T d1cs1a_         108 --------------------------------------------------------------------------------  107 (384)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccc
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVH  298 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~  298 (514)
                               ..+...|.++.+++..|.+.+++.+.    ++|++|++|+|.||+..+.|+++|.++|+++|+++|+|...
T Consensus       108 ---------~~~~~~g~~~~~~d~~d~~~~~~~~~----~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~  174 (384)
T d1cs1a_         108 ---------SLAKRGCYRVLFVDQGDEQALRAALA----EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF  174 (384)
T ss_dssp             ---------HHHTTTSCEEEEECTTCHHHHHHHHH----TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             ---------hhhcccccccccccCCCHHHHHhhcc----ccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccc
Confidence                     11222344555666666666666554    46899999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEec-HHHHHHHHhhcCceEeccCCcHHHHHHHHHHH
Q psy16848        299 AVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGT-KNFIDTIRSYAAGFIFTTSLPPTVLAGAREAI  373 (514)
Q Consensus       299 ~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l  373 (514)
                      +-...         ...+..++|+++.|.+|.+++.|    |+++.+ +.+.+.+......+  +..+++..+..+...|
T Consensus       175 atP~~---------~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~--G~~~~p~~a~ll~rgL  243 (384)
T d1cs1a_         175 LSPAL---------QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--GVTGGAFDSYLLLRGL  243 (384)
T ss_dssp             TCTTT---------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--TCBCCHHHHHHHHHHH
T ss_pred             cCccc---------ccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhh--hhccccccHHHHhhcc
Confidence            73322         12235589999999999998744    877764 55556555444333  4467777777766666


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        374 RILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      +-+     .-++++..+++..+.+.|++.
T Consensus       244 ~TL-----~lRm~~~~~nA~~lA~~L~~h  267 (384)
T d1cs1a_         244 RTL-----VPRMELAQRNAQAIVKYLQTQ  267 (384)
T ss_dssp             TTH-----HHHHHHHHHHHHHHHHHHTTC
T ss_pred             chh-----HHHHHHHHHHHHHHHHhcccC
Confidence            533     347788889999999999876

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.4e-18  Score=177.77  Aligned_cols=311  Identities=13%  Similarity=0.093  Sum_probs=197.0

Q ss_pred             HHHHHHHHHHhHcCCC---cEEEEeccccc-cccchhhccc-cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHH
Q psy16848         61 FHEKLEEDVAKLHQKE---AGLVFTSCYVA-NDSTLFTLGK-MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNH  135 (514)
Q Consensus        61 ~~~~~~~~la~~~~~~---~~i~~~sGt~a-~~~~l~~l~~-~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~  135 (514)
                      +..++.+++++++|.+   .++++++||.+ +++++.++.. ..+++.|+++...|.++..+++.+|..++.+....   
T Consensus        95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~---  171 (445)
T d3bc8a1          95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL---  171 (445)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE---
T ss_pred             HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec---
Confidence            4455667788888865   35666777755 4444444422 34789999999999999999999998876543200   


Q ss_pred             HHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhc
Q psy16848        136 LTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTL  215 (514)
Q Consensus       136 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l  215 (514)
                                       .+                                        ..+                  
T Consensus       172 -----------------~~----------------------------------------~~~------------------  176 (445)
T d3bc8a1         172 -----------------EG----------------------------------------DEL------------------  176 (445)
T ss_dssp             -----------------ET----------------------------------------TEE------------------
T ss_pred             -----------------cC----------------------------------------ccc------------------
Confidence                             00                                        000                  


Q ss_pred             cCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEe
Q psy16848        216 VNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  295 (514)
Q Consensus       216 ~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~D  295 (514)
                                                .-|.+.+++.+++...+++++|+++++++++|.+.|+++|.++|++||+++++|
T Consensus       177 --------------------------~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD  230 (445)
T d3bc8a1         177 --------------------------RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN  230 (445)
T ss_dssp             --------------------------ECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             --------------------------ccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEE
Confidence                                      116677777777766667889999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCccccCCCccCceEEEcCCcccccC-CC-eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-IG-GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-~G-G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      ++++.+..+...  .........+.|++++|.||+++. .| |+++. +..+.+.+.......  ....+..   .+...
T Consensus       231 ~a~~~~~~~~~~--~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~  303 (445)
T d3bc8a1         231 NAYGLQSSKCMH--LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR--ASASPSL---DVLIT  303 (445)
T ss_dssp             CTTTTTCHHHHH--HHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC--BCSHHHH---HHHHH
T ss_pred             ccchhhhhhccc--cchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhc--ccCcchH---HHHHH
Confidence            999854321000  001111123589999999998754 34 56655 456666665443332  1122222   22333


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC----CCccccCC--CcEEEEEeC-----CCccHHHHHHHHHHhCCeEEec
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI----GFPVEHTP--SHIIPIKIG-----NPALNTKICDMLLKEKGHYVQP  441 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~--~~~~~i~l~-----~~~~~~~~~~~Ll~~~GI~v~~  441 (514)
                      +..+......+..+...++.+++.+.|.++    +..+....  .....+.+.     ...+..++...|. +.||....
T Consensus       304 ~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~-~~gI~~~~  382 (445)
T d3bc8a1         304 LLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLF-TRQVSGAR  382 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHH-HTTCCSCE
T ss_pred             HHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHH-HcCCCcce
Confidence            433334455566666777777777777653    44443322  222233332     2234567777884 88874321


Q ss_pred             ccCCC-----------------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy16848        442 INYPT-----------------VPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLDL  483 (514)
Q Consensus       442 ~~~~~-----------------~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~~  483 (514)
                      ...+.                 .......+|++++..+|+||||.++++|+++++++++
T Consensus       383 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk  441 (445)
T d3bc8a1         383 AVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK  441 (445)
T ss_dssp             EECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            11100                 0112357999999999999999999999999998754

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1e-18  Score=177.89  Aligned_cols=350  Identities=12%  Similarity=-0.009  Sum_probs=226.3

Q ss_pred             CCceeeecccC-CCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCc-------EEEEeccccc
Q psy16848         16 SNRVTCRLSSV-QYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEA-------GLVFTSCYVA   87 (514)
Q Consensus        16 ~g~~~~d~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~i~~~sGt~a   87 (514)
                      +|+..+++++. .+--+|++.+.+.+.+.+   +......+-...++..++.+++++++|.+.       ..++++||+|
T Consensus        51 dg~~~~n~asf~~t~~~~~~~~l~~~~~~~---N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA  127 (450)
T d1pmma_          51 DGNARQNLATFCQTWDDENVHKLMDLSINK---NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEA  127 (450)
T ss_dssp             SCCGGGBCSCCSCCCCCHHHHHHHHHTTTC---BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHH
T ss_pred             CCCccccccccccCCCCHHHHHHHHHHHhc---CCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHH
Confidence            56555555542 222367777777765554   211111111235677788889999998642       5888899999


Q ss_pred             cccchhhccc----------cCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccc
Q psy16848         88 NDSTLFTLGK----------MIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVH  157 (514)
Q Consensus        88 ~~~~l~~l~~----------~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~  157 (514)
                      |+.++.+...          ......++++...|.++..+++..|.+++.++..                          
T Consensus       128 ~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~--------------------------  181 (450)
T d1pmma_         128 CMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMR--------------------------  181 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCB--------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeec--------------------------
Confidence            9988876532          0112234555566666666666665554433221                          


Q ss_pred             cccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCE
Q psy16848        158 SMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPK  237 (514)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~  237 (514)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (450)
T d1pmma_         182 --------------------------------------------------------------------------------  181 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHH------HHcCCEEEEecccccccc--CCCCCC
Q psy16848        238 IIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS------HQHGALTFVDEVHAVGLY--GEHGAG  309 (514)
Q Consensus       238 ~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~------~~~gv~li~Dea~~~g~~--g~~~~~  309 (514)
                          ..++..+.+.+++...++|.+|+.+..+|.+|.+-|+.+|.++|      +++|+++++|.|++.+..  ..+...
T Consensus       182 ----~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~  257 (450)
T d1pmma_         182 ----PGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV  257 (450)
T ss_dssp             ----TTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC
T ss_pred             ----CCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhh
Confidence                11234444555566667799999999999999999988777765      557999999999983321  111100


Q ss_pred             ccccCCCccCceEEEcCCccccc-CCC-eEEEecH-HHHHHHHhhcC---ceE---ecc--CCcHHHHHHHHHHHHHhhh
Q psy16848        310 IGERDGQLHNMDIISGTLGKAFG-NIG-GYIVGTK-NFIDTIRSYAA---GFI---FTT--SLPPTVLAGAREAIRILSS  378 (514)
Q Consensus       310 ~~~~~~~~~~~di~~~S~sK~lg-~~G-G~l~~~~-~~~~~l~~~~~---~~~---~~~--~~~~~~~~a~~~~l~~~~~  378 (514)
                        -.++ ...+|.+..|.||+++ +.| |+++.++ ...........   +..   ++.  +-+..........+..+..
T Consensus       258 --~~~~-~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~  334 (450)
T d1pmma_         258 --WDFR-LPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGR  334 (450)
T ss_dssp             --CSTT-STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHH
T ss_pred             --hhhc-ccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhH
Confidence              1122 3479999999999875 556 8877653 33322211111   111   111  2233444455666776667


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhC-CCccccC-----CCcEEEEEeCC----CccHHHHHHHHHHhCCeEEecccCCCCC
Q psy16848        379 QEGVELRAKHQDIVAYLRNELIQI-GFPVEHT-----PSHIIPIKIGN----PALNTKICDMLLKEKGHYVQPINYPTVP  448 (514)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-----~~~~~~i~l~~----~~~~~~~~~~Ll~~~GI~v~~~~~~~~~  448 (514)
                      +++.++.++..++.+++.+.|++. ++++..+     .-+.+.+++.+    ..+..++.+.|. ++|..+.....+...
T Consensus       335 ~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~-~~Gw~v~~~~~p~~~  413 (450)
T d1pmma_         335 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR-LRGWQVPAFTLGGEA  413 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHH-TTTCBCCEEECCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHH-HcCCeeeccCcCCCc
Confidence            788999999999999999999998 5666532     23467887753    235668888885 999887654443333


Q ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Q psy16848        449 VGEEKIRLAPTPFHTREMIDKFVTDLLAVWKSLD  482 (514)
Q Consensus       449 ~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~~~  482 (514)
                      .....+|+.+...+|++++|++++.|+++++.+.
T Consensus       414 ~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~  447 (450)
T d1pmma_         414 TDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS  447 (450)
T ss_dssp             TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4467899999999999999999999999998874

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.81  E-value=4.9e-19  Score=182.18  Aligned_cols=373  Identities=15%  Similarity=0.059  Sum_probs=214.9

Q ss_pred             CCceeeecccCCCCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhc
Q psy16848         16 SNRVTCRLSSVQYKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTL   95 (514)
Q Consensus        16 ~g~~~~d~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l   95 (514)
                      .+..+||+.+..+-.  .+.+++..++.. |.      ..|+..+...+|++++++++|.+++++++|||+|++.++.++
T Consensus        40 ~~~~~id~~sd~~t~--~~~~~~~a~~~~-gd------~~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~  110 (465)
T d1ax4a_          40 SSAVYIDLLTDSGTN--AMSDHQWAAMIT-GD------EAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL  110 (465)
T ss_dssp             GGGCSEECSCSSSCC--CEEHHHHHHHHT-CC------CCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred             ccCeeeecccccchh--hhhHHHHHHHhh-hh------hhhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHH
Confidence            445678886654432  233333333332 21      123345677899999999999999999999999999999998


Q ss_pred             cccCCCc-------eEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         96 GKMIPGL-------HYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        96 ~~~~~gd-------~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      .+  +|+       .++.....|......+...|..++......                                    
T Consensus       111 ~~--~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~------------------------------------  152 (465)
T d1ax4a_         111 LK--YKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK------------------------------------  152 (465)
T ss_dssp             HH--HHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGG------------------------------------
T ss_pred             HH--HHHhcCCCCCeEEeccchhhhhHHHHHHcCCeeecccccc------------------------------------
Confidence            65  333       334444444444444455555444221100                                    


Q ss_pred             HhhhhhhcCceEEeecccccccccc-CCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhH
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGE-HGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNH  247 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~  247 (514)
                                        ....... ...|                                            ..|.+.
T Consensus       153 ------------------~~~~~~~~~~~~--------------------------------------------~~d~~~  170 (465)
T d1ax4a_         153 ------------------AFDSETYDDWKG--------------------------------------------DFDIKK  170 (465)
T ss_dssp             ------------------GGCTTSCCTTTT--------------------------------------------CBCHHH
T ss_pred             ------------------cCCCCCCCCccC--------------------------------------------ccCHHH
Confidence                              0000000 0000                                            227888


Q ss_pred             HHHHHhhccCCCceEEEEecCCCCCccc-cC---HHHHHHHHHHcCCEEEEeccccccccC----C----CCCCccccC-
Q psy16848        248 LTQVLENMDVKIPKLVAFETVHSMTGAI-CP---LKELCEVSHQHGALTFVDEVHAVGLYG----E----HGAGIGERD-  314 (514)
Q Consensus       248 l~~~l~~~~~~~~~~vv~~~~~nptG~~-~~---l~~l~~l~~~~gv~li~Dea~~~g~~g----~----~~~~~~~~~-  314 (514)
                      +++.+++...+.+.++++++.+|..|.. ++   +++|.++|++||+++|+|+++..+...    .    .+....+.. 
T Consensus       171 l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~  250 (465)
T d1ax4a_         171 LKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIF  250 (465)
T ss_dssp             HHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHH
T ss_pred             HHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhcc
Confidence            8888887666667888888888877654 44   799999999999999999999744221    0    110010000 


Q ss_pred             CCccCceEEEcCCcccccCCC-eEEEecHHH--HHHHHhh---cCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHH
Q psy16848        315 GQLHNMDIISGTLGKAFGNIG-GYIVGTKNF--IDTIRSY---AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKH  388 (514)
Q Consensus       315 ~~~~~~di~~~S~sK~lg~~G-G~l~~~~~~--~~~l~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  388 (514)
                      ....-.|++++|.+|..++.+ |+++.+++.  .+.....   ................++...+.....   ++..++.
T Consensus       251 ~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~---~~~~~~~  327 (465)
T d1ax4a_         251 DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYR  327 (465)
T ss_dssp             HHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred             ccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhh---HHHHHHH
Confidence            001136889889999887654 777776432  2222111   111100112233333333333332211   2355666


Q ss_pred             HHHHHHHHHHHHhCCCccccCCCc-EEEEEeC----C----CccHHHHHHHHHHhCCeEEecccCCC----------CCC
Q psy16848        389 QDIVAYLRNELIQIGFPVEHTPSH-IIPIKIG----N----PALNTKICDMLLKEKGHYVQPINYPT----------VPV  449 (514)
Q Consensus       389 ~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~l~----~----~~~~~~~~~~Ll~~~GI~v~~~~~~~----------~~~  449 (514)
                      .++.+++.+.|++.++++..+.+. .+.+...    .    ......+...++.+.||.......+.          .+.
T Consensus       328 ~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~  407 (465)
T d1ax4a_         328 IGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHA  407 (465)
T ss_dssp             HHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCC
T ss_pred             HHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCC
Confidence            777889999999998887655443 3333221    1    11234555666568899875432110          011


Q ss_pred             CCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCccCCcchhhHhHHHHHH
Q psy16848        450 GEEKIRLAPT-PFHTREMIDKFVTDLLAVWKSLDLPLSGLTCAQVNILLFII  500 (514)
Q Consensus       450 ~~~~iRl~~~-~~~t~e~id~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  500 (514)
                      ..+.+|++++ ...|+||+|+++++|++++++.....+...-.+.+++++|-
T Consensus       408 ~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i~gl~~~~e~~~lr~f~  459 (465)
T d1ax4a_         408 DMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLRHFT  459 (465)
T ss_dssp             SCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTCCCEEEEECCSSCHHHH
T ss_pred             CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhccCcccccccccccccc
Confidence            2458999864 45699999999999999998765433222234556666543

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.80  E-value=1.2e-18  Score=169.13  Aligned_cols=240  Identities=17%  Similarity=0.128  Sum_probs=177.7

Q ss_pred             HHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhc
Q psy16848         64 KLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  143 (514)
Q Consensus        64 ~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  143 (514)
                      .||++++++-|.+.++.++||..|+..++.++++  +||+|+++..-|..+..-++                        
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~--~Gd~iv~~~~~Yg~t~~~~~------------------------   55 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFE------------------------   55 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHH------------------------
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHH------------------------
Confidence            5889999999999999999999999888888877  99999999988877663221                        


Q ss_pred             ccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeee
Q psy16848        144 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIH  223 (514)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~  223 (514)
                                                                                                      
T Consensus        56 --------------------------------------------------------------------------------   55 (331)
T d1pffa_          56 --------------------------------------------------------------------------------   55 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHH-HHcCCEEEEeccccccc
Q psy16848        224 ASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVS-HQHGALTFVDEVHAVGL  302 (514)
Q Consensus       224 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~-~~~gv~li~Dea~~~g~  302 (514)
                          ..+...|.++.+++..|.+.+++.+    .+++++|+++++.||+..+.+++++.+++ +++|+++|+|...+-..
T Consensus        56 ----~~l~~~gi~~~~~d~~d~~~~~~~i----~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~  127 (331)
T d1pffa_          56 ----HQLRKFGVEVDFIDMAVPGNIEKHL----KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI  127 (331)
T ss_dssp             ----THHHHTTCEEEEECTTSTTHHHHTC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH
T ss_pred             ----HHHHhcCeEEEEecccchhhHhhhc----ccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccc
Confidence                1233456677777777777766665    45699999999999999999999999985 67899999999998333


Q ss_pred             cCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhh
Q psy16848        303 YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSS  378 (514)
Q Consensus       303 ~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  378 (514)
                      .         ...+..++|+++.|.+|.+++.|    |+++.+++.............++..+++..+..+...++.+. 
T Consensus       128 ~---------~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~-  197 (331)
T d1pffa_         128 L---------TNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLD-  197 (331)
T ss_dssp             H---------CCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHH-
T ss_pred             c---------ccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHH-
Confidence            2         12234589999999999998744    888888776655443322222255678888888888777552 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhC-CCccc------------------cCCCcEEEEEeCCCccHHHHHHHH
Q psy16848        379 QEGVELRAKHQDIVAYLRNELIQI-GFPVE------------------HTPSHIIPIKIGNPALNTKICDML  431 (514)
Q Consensus       379 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~------------------~~~~~~~~i~l~~~~~~~~~~~~L  431 (514)
                          .+.++..++...+.+.|++. .+..+                  ...++++.+.+.+.....+|++.|
T Consensus       198 ----~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l  265 (331)
T d1pffa_         198 ----MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNC  265 (331)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTC
T ss_pred             ----HHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhC
Confidence                47788888888999999887 32211                  113558888887644455555554

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.80  E-value=4e-17  Score=161.54  Aligned_cols=217  Identities=18%  Similarity=0.157  Sum_probs=168.5

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+-...+|++++++-|.+.++.++||..|+..++.++.+  +||+|++++..|..+..-+                   
T Consensus        57 ~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~~--~gd~vv~~~~~yg~t~~~~-------------------  115 (394)
T d1e5ea_          57 GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK--AGDHLISDECLYGCTHALF-------------------  115 (394)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHH-------------------
T ss_pred             CCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhcc--cccccccccceeehhhHhH-------------------
Confidence            4677899999999999999999999999999888888877  9999999999887765222                   


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (394)
T d1e5ea_         116 --------------------------------------------------------------------------------  115 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHH-cCCEEEEec
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQ-HGALTFVDE  296 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~-~gv~li~De  296 (514)
                               ...+...|.++.+++..|.+.+++.++    +++++|++++|.||+..+.+++++.+.+++ +|+++|+|.
T Consensus       116 ---------~~~~~~~gi~~~~~d~~d~~~~~~~i~----~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDn  182 (394)
T d1e5ea_         116 ---------EHALTKFGIQVDFINTAIPGEVKKHMK----PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN  182 (394)
T ss_dssp             ---------HTHHHHTTCEEEEECTTSTTHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEEC
T ss_pred             ---------HHHhhccceeeeccCCCCHHHHHHhhc----ccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecC
Confidence                     122344566777788777777777664    569999999999999999999999887765 689999999


Q ss_pred             cccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHH
Q psy16848        297 VHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREA  372 (514)
Q Consensus       297 a~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  372 (514)
                      ..+-...         ...+..++|+++.|.+|.+++.+    |+++++++.....+........+..+++..+..+...
T Consensus       183 T~atP~~---------~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rg  253 (394)
T d1e5ea_         183 TFCSPMI---------TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRG  253 (394)
T ss_dssp             TTTCTTT---------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHH
T ss_pred             cccCccc---------CCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhh
Confidence            9973322         12235589999999999998744    8888888877765433222122456788888777777


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        373 IRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      |+-+     .-++++..+++..+.+.|++.
T Consensus       254 l~TL-----~lRm~r~~~nA~~lA~~L~~h  278 (394)
T d1e5ea_         254 LSTL-----NIRMKAESENAMKVAEYLKSH  278 (394)
T ss_dssp             HTTH-----HHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhH-----HHHHHHHHHHHHHHHHHHhhc
Confidence            6643     347888889999999999987

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=9.9e-18  Score=165.80  Aligned_cols=215  Identities=13%  Similarity=0.088  Sum_probs=166.1

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+....+|++++++-|.+.++.++||..|+..++.++++  +||+|++....|..+..-++                  
T Consensus        56 ~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~--~Gd~iv~~~~~Yg~T~~l~~------------------  115 (391)
T d1cl1a_          56 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEPSQDFCS------------------  115 (391)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTSCHHHHHHHH------------------
T ss_pred             CChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccC--CCCeEEEecccccchhhhhh------------------
Confidence            3577899999999999999999999999999999888877  99999999999988763321                  


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (391)
T d1cl1a_         116 --------------------------------------------------------------------------------  115 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHc--CCEEEEe
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQH--GALTFVD  295 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~--gv~li~D  295 (514)
                                ..+...|.++.+++..|.+.++    +...+++++|++++|.||+..+.|++++.++|+++  |+++|+|
T Consensus       116 ----------~~l~~~Gi~~~~~d~~d~~~~~----~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVD  181 (391)
T d1cl1a_         116 ----------KILSKLGVTTSWFDPLIGADIV----KHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID  181 (391)
T ss_dssp             ----------HTGGGGTCEEEEECTTCGGGGG----GTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred             ----------hcccccccccccccCccccccc----cccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEe
Confidence                      1122345566666665655543    44567799999999999999999999999999875  9999999


Q ss_pred             ccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHH
Q psy16848        296 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGARE  371 (514)
Q Consensus       296 ea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~  371 (514)
                      +..+-...         ...+..++|+++.|.+|.+++.+    |.++.++++.+.+.......  +..+++..+..+..
T Consensus       182 nT~atP~~---------~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~--G~~~~p~~a~ll~r  250 (391)
T d1cl1a_         182 NTWAAGVL---------FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM--GQMVDADTAYITSR  250 (391)
T ss_dssp             CTTTTTTS---------SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHT--TCCCCHHHHHHHHH
T ss_pred             ccccchhh---------hcccccccceEEeecchhccccccccccceeccccccccchhhhhcc--cccCCchhhhhhhc
Confidence            99973332         12234589999999999998744    88888888777766554333  44677777766666


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        372 AIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                      .++-+     ..+.++..+++..+.+.|++.
T Consensus       251 gl~TL-----~lR~~~~~~nA~~vA~~L~~h  276 (391)
T d1cl1a_         251 GLRTL-----GVRLRQHHESSLKVAEWLAEH  276 (391)
T ss_dssp             HHTTH-----HHHHHHHHHHHHHHHHHHHTC
T ss_pred             cchhH-----HHHHHHHHHHHHHHHHHHHhc
Confidence            55533     347788888889999999886

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.77  E-value=6e-18  Score=163.81  Aligned_cols=319  Identities=14%  Similarity=0.048  Sum_probs=188.7

Q ss_pred             CCCChhHHHHHHHHHHHhCCCCCCcCcccCcchHHHHHHHHHHhHcCCC--cEEEEeccccccccchhhccccCCCceEE
Q psy16848         28 YKVPKGGRKCLGEALEKFGTGAGGTRNISGNSLFHEKLEEDVAKLHQKE--AGLVFTSCYVANDSTLFTLGKMIPGLHYI  105 (514)
Q Consensus        28 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~i~~~sGt~a~~~~l~~l~~~~~gd~v~  105 (514)
                      |..||++.+|+.++....+.       .+|..+..+++++++++++|.+  +++|++|||+||..++..+..  +++.++
T Consensus        10 ~g~~P~v~eAl~~~~~~~~~-------~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~--~~~~~~   80 (340)
T d1svva_          10 VGMHPKILDLMARDNMTQHA-------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR--PWEAVI   80 (340)
T ss_dssp             SCCCHHHHHHHHHHTTCCCC-------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC--TTEEEE
T ss_pred             CCCCHHHHHHHHHHhhcCCC-------CCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh--hccccc
Confidence            33499999999887654322       2355688899999999999976  456677899999999988876  999999


Q ss_pred             ecCccchhhhhhhhcCCCCee--eccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEee
Q psy16848        106 SDAGNHASMIQGIRNSSAPKI--IYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVD  183 (514)
Q Consensus       106 ~~~~~h~~~~~~~~~~~~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (514)
                      +....|.+........+....  ......                                                   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  109 (340)
T d1svva_          81 ATQLGHISTHETGAIEATGHKVVTAPCPD---------------------------------------------------  109 (340)
T ss_dssp             EETTSHHHHSSTTHHHHTTCCEEEECCTT---------------------------------------------------
T ss_pred             cccccceeeeecccccccceeeeeccccc---------------------------------------------------
Confidence            999998887644332211111  000000                                                   


Q ss_pred             ccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhc---cCCCc
Q psy16848        184 EVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM---DVKIP  260 (514)
Q Consensus       184 ~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~---~~~~~  260 (514)
                                                                               ...+.+.........   ..+++
T Consensus       110 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  132 (340)
T d1svva_         110 ---------------------------------------------------------GKLRVADIESALHENRSEHMVIP  132 (340)
T ss_dssp             ---------------------------------------------------------SCCCHHHHHHHHHHSCSTTSCEE
T ss_pred             ---------------------------------------------------------ccccchhHHHHhhhhhcccCCcc
Confidence                                                                     000111111111111   12223


Q ss_pred             eEEEEecCCCCCccccC---HHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC-e
Q psy16848        261 KLVAFETVHSMTGAICP---LKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG-G  336 (514)
Q Consensus       261 ~~vv~~~~~nptG~~~~---l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G-G  336 (514)
                      .++++.++ |+.|.+.+   +..+.+.|+++|.++++|+++..+.......... ........++...+..|..+..+ +
T Consensus       133 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  210 (340)
T d1svva_         133 KLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLT-LADIARLTDMFYIGATKAGGMFGEA  210 (340)
T ss_dssp             EEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCC-HHHHHHHCSEEEEECTTTTCSSCEE
T ss_pred             eeeeeccc-ccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccc-cccccccceeeecCCcccccccccc
Confidence            34444444 44555554   6778899999999999999998544322221111 11111234566556666665534 4


Q ss_pred             EEEecHHHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCCCcccc-CCCcEEE
Q psy16848        337 YIVGTKNFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIGFPVEH-TPSHIIP  415 (514)
Q Consensus       337 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~  415 (514)
                      +....................+........+++   +............++...+++++.+.|++.|+.+.. +.++++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~  287 (340)
T d1svva_         211 LIILNDALKPNARHLIKQRGALMAKGWLLGIQF---EVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLF  287 (340)
T ss_dssp             EEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHH---HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEC
T ss_pred             ccccchhhhhhhhhhcccccCccchhhHHHHHH---HHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEE
Confidence            444444433322222111111112233333333   333334455567788888999999999999988764 4566666


Q ss_pred             EEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy16848        416 IKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAV  477 (514)
Q Consensus       416 i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~  477 (514)
                      +.++     .+..+.|+ ++++.....   ..+.+.+.+|++++..+|+||||+++++|+++
T Consensus       288 ~~~~-----~~~~~~l~-~~~~~~~~~---~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         288 PILE-----NTMIAELN-NDFDMYTVE---PLKDGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             BEEE-----HHHHHHHT-TTEECEEEE---EETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             EeCC-----HHHHHHHH-Hhhhhhccc---ccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            6553     34566664 555433211   12345789999999999999999999999863

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.77  E-value=3.9e-17  Score=161.61  Aligned_cols=346  Identities=15%  Similarity=0.138  Sum_probs=213.8

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCc---chHHHHHHHHHHhHcCCCcE-----EEEeccccccc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGN---SLFHEKLEEDVAKLHQKEAG-----LVFTSCYVAND   89 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~-----i~~~sGt~a~~   89 (514)
                      ..+.+-...-...|.+.+++...+. +|..++++.+++.|.   .++..-+.+++.++|+.+++     +-..||+.||+
T Consensus        28 ~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~  107 (463)
T d2a7va1          28 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL  107 (463)
T ss_dssp             HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             cCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHH
Confidence            3455533333345888888877774 677777777777664   33333445778888998874     55689999999


Q ss_pred             cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHH
Q psy16848         90 STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKEL  169 (514)
Q Consensus        90 ~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
                      +++.++.+  |||+|+.-+..|..-+.--.......                         +.+.|.+            
T Consensus       108 av~~all~--pgD~Im~l~l~~GGHlshg~~~~~~~-------------------------~~~~g~~------------  148 (463)
T d2a7va1         108 AVYTALLQ--PHDRIMGLDLPDGGHLTHGYMSDVKR-------------------------ISATSIF------------  148 (463)
T ss_dssp             HHHHHHCC--SCEECCC---------------------------------------------------------------
T ss_pred             HHHHHHcC--CCceEEeeccCcCccccccccccccc-------------------------ccceeeE------------
Confidence            99999977  99999877665544331100000000                         0000000            


Q ss_pred             hhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------CC
Q psy16848        170 CEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------HN  243 (514)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~~  243 (514)
                                                                                       -+.+.++      .-
T Consensus       149 -----------------------------------------------------------------~~~~~Y~~d~~~~~I  163 (463)
T d2a7va1         149 -----------------------------------------------------------------FESMPYKLNPKTGLI  163 (463)
T ss_dssp             ----------------------------------------------------------------------CCBCTTTCSB
T ss_pred             -----------------------------------------------------------------eeeeeeeccCCCCcC
Confidence                                                                             0011111      12


Q ss_pred             ChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEE
Q psy16848        244 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDII  323 (514)
Q Consensus       244 d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~  323 (514)
                      |++.+++..++.   ++++|++..-..|  ..+|+++++++|++.|++|+.|.+|..|.....-  +...   ...+|++
T Consensus       164 Dyd~~~~~a~~~---kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~--~~sP---~~~aDvv  233 (463)
T d2a7va1         164 DYNQLALTARLF---RPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKV--IPSP---FKHADIV  233 (463)
T ss_dssp             CHHHHHHHHHHH---CCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCG---GGTCSEE
T ss_pred             cHHHHHHHHhhc---CCceEEecccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhh--hcCh---hhhhhhh
Confidence            777888777765   3678877654433  5667999999999999999999999977652110  1111   2357999


Q ss_pred             EcCCcccc-cCCCeEEEecH---------------HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHH
Q psy16848        324 SGTLGKAF-GNIGGYIVGTK---------------NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAK  387 (514)
Q Consensus       324 ~~S~sK~l-g~~GG~l~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  387 (514)
                      ++|.||+| |+.||++..++               ++.+.+.....+.. ..+......++...++....+....+..++
T Consensus       234 t~tTHKTlrGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~-qggph~h~iAa~Ava~~ea~~~~fk~Ya~q  312 (463)
T d2a7va1         234 TTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-QGGPHNHAIAAVAVALKQACTPMFREYSLQ  312 (463)
T ss_dssp             EEESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             hchhhhhhcCCCceEEEEcccccccccccCccchhHHHHHhhhhcCccc-chhhhhhhHHHHHHHHHHhcCchHHHHHHH
Confidence            99999999 67789988765               55666655433321 223333344444445554445667788999


Q ss_pred             HHHHHHHHHHHHHhCCCcccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeC---
Q psy16848        388 HQDIVAYLRNELIQIGFPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPT---  459 (514)
Q Consensus       388 ~~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~---  459 (514)
                      +.++++.|.+.|.+.|+.++.  ...+++.+.+.. +.+.....+.| ++.||.+..-..|..  +..++.||+..+   
T Consensus       313 Vv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~L-e~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~T  391 (463)
T d2a7va1         313 VLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALT  391 (463)
T ss_dssp             HHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCCHHHHHHHH-HhccCccCCccCCCCCCCCCCCceEeCCHHHH
Confidence            999999999999999999864  356788888754 34555666666 799999974443332  223578999775   


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHH
Q psy16848        460 -PFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       460 -~~~t~e~id~~~~~l~~~l~~  480 (514)
                       ..+.++|++++.+.|.+++..
T Consensus       392 trG~~e~dm~~iA~~I~~~l~~  413 (463)
T d2a7va1         392 SRQFREDDFRRVVDFIDEGVNI  413 (463)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHH
Confidence             467889999999999988764

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=3.9e-16  Score=154.97  Aligned_cols=216  Identities=18%  Similarity=0.143  Sum_probs=157.9

Q ss_pred             cchHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHH
Q psy16848         58 NSLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLT  137 (514)
Q Consensus        58 ~~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~  137 (514)
                      ..+-.+.+|++++++-|.+.++.++||-.|+..++.++++  +||+|++....|..+..-++                  
T Consensus        56 ~nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~~--~gd~il~~~~~Yg~t~~l~~------------------  115 (421)
T d2ctza1          56 MNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ--AGDNIVSTPNLYGGTFNQFK------------------  115 (421)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEECSCCCHHHHHHHH------------------
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhcc--cccceeecCCcCCchhHHHH------------------
Confidence            3577899999999999999999999999998888888877  99999999999988763221                  


Q ss_pred             HHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccC
Q psy16848        138 QVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVN  217 (514)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~  217 (514)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (421)
T d2ctza1         116 --------------------------------------------------------------------------------  115 (421)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecc
Q psy16848        218 PEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEV  297 (514)
Q Consensus       218 ~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea  297 (514)
                                ..+...|.++.+++..+..   +..++...++|++|++|+|.||+..+.|+++|+++|+++|+++|+|+.
T Consensus       116 ----------~~~~~~gi~~~~~d~~~~~---~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT  182 (421)
T d2ctza1         116 ----------VTLKRLGIEVRFTSREERP---EEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT  182 (421)
T ss_dssp             ----------THHHHTTCEEEECCTTCCH---HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECG
T ss_pred             ----------HHHhhccccceecccccCc---chhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccc
Confidence                      1223344455555433332   222333456799999999999999999999999999999999999999


Q ss_pred             ccc-cccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEecHHH----------------------------
Q psy16848        298 HAV-GLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVGTKNF----------------------------  344 (514)
Q Consensus       298 ~~~-g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~~~~~----------------------------  344 (514)
                      .+. ...         ...+..++|+++.|.+|.+++.|    |+++.+++.                            
T Consensus       183 ~a~tP~~---------~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  253 (421)
T d2ctza1         183 FGMGGYL---------LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGE  253 (421)
T ss_dssp             GGGGGTS---------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGG
T ss_pred             cccccee---------ccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhcc
Confidence            862 221         12235589999999999998744    888764321                            


Q ss_pred             ---HHHHHh-hcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC
Q psy16848        345 ---IDTIRS-YAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI  402 (514)
Q Consensus       345 ---~~~l~~-~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  402 (514)
                         +..++. ....+  +..++|..+..+...|+-+     .-++++..+++..+.+.|++.
T Consensus       254 ~~~~~~~~~~~~~~~--G~~~sP~~a~l~~rgl~TL-----~lRm~~~~~nA~~vA~~L~~h  308 (421)
T d2ctza1         254 LAFIVKARVDGLRDQ--GQALGPFEAWVVLLGMETL-----SLRAERHVENTLHLAHWLLEQ  308 (421)
T ss_dssp             GHHHHHHHHTHHHHH--CCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhc--cCCCCHHHHHHHhcCCcch-----hhHHHHHHHHHHHHHhhhccC
Confidence               111110 01111  4467888877777766533     347788889999999999887

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.75  E-value=1.4e-16  Score=158.23  Aligned_cols=344  Identities=16%  Similarity=0.134  Sum_probs=226.4

Q ss_pred             eeeecccCCCCCChhHHHHHHHHHH-HhCCCCCCcCcccCcchHHHHHH----HHHHhHcCCC----cE-EEEecccccc
Q psy16848         19 VTCRLSSVQYKVPKGGRKCLGEALE-KFGTGAGGTRNISGNSLFHEKLE----EDVAKLHQKE----AG-LVFTSCYVAN   88 (514)
Q Consensus        19 ~~~d~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~la~~~~~~----~~-i~~~sGt~a~   88 (514)
                      ..+.+-...-...|.+.+++...+. +|..++++.+++.|. +..+++|    +++.++|+.+    ++ +-..||+.||
T Consensus        32 ~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An  110 (470)
T d1rv3a_          32 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGT-EHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPAN  110 (470)
T ss_dssp             SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred             cCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCc-hhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHH
Confidence            3455533333345888888877775 677777777776664 4555555    5568888876    22 3357999999


Q ss_pred             ccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhH
Q psy16848         89 DSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKE  168 (514)
Q Consensus        89 ~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
                      ++++.++.+  |||.|+.-+..|..-+.--...+...+.+                         .+.            
T Consensus       111 ~av~~all~--pgD~im~~~l~~GGHlshg~~~~~~~~~~-------------------------~~~------------  151 (470)
T d1rv3a_         111 FAVYTALVE--PHGRIMGLDLPDGGHLTHGFMTDKKKISA-------------------------TSI------------  151 (470)
T ss_dssp             HHHHHHHTC--TTCEEEEECGGGTCCGGGCCBCSSCBCSH-------------------------HHH------------
T ss_pred             HHHHHHhcC--CCCeEeeeccccCCcccccccccCCCccc-------------------------ccc------------
Confidence            999999977  99999987776655442211111000000                         000            


Q ss_pred             HhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEec------C
Q psy16848        169 LCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYR------H  242 (514)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~------~  242 (514)
                                                                                       ..+.+.++      .
T Consensus       152 -----------------------------------------------------------------~~~~~~y~v~~~~~~  166 (470)
T d1rv3a_         152 -----------------------------------------------------------------FFESMAYKVNPDTGY  166 (470)
T ss_dssp             -----------------------------------------------------------------HSEEEEECBCTTTCS
T ss_pred             -----------------------------------------------------------------eeEeeEEEEecccCc
Confidence                                                                             00111222      1


Q ss_pred             CChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccC-CCCCCccccCCCccCce
Q psy16848        243 NDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYG-EHGAGIGERDGQLHNMD  321 (514)
Q Consensus       243 ~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g-~~~~~~~~~~~~~~~~d  321 (514)
                      -|++.+++..++.   ++++|++..-.+|  ..+|+++++++|++.|++|+.|.+|..|... ...   ...   ....|
T Consensus       167 IDyd~l~~~a~~~---kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~---~sP---l~~aD  235 (470)
T d1rv3a_         167 IDYDRLEENARLF---HPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV---PSP---FEHCH  235 (470)
T ss_dssp             BCHHHHHHHHHHH---CCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS---CCG---GGTCS
T ss_pred             ccHHHHHHHHHhh---CcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhcccccc---CCh---hheee
Confidence            2677777777765   3678777654433  5677999999999999999999999977642 111   111   23579


Q ss_pred             EEEcCCcccc-cCCCeEEEecH---------------HHHHHHHhhcCceEeccCCcHHHHHHHHHHHHHhhhchHHHHH
Q psy16848        322 IISGTLGKAF-GNIGGYIVGTK---------------NFIDTIRSYAAGFIFTTSLPPTVLAGAREAIRILSSQEGVELR  385 (514)
Q Consensus       322 i~~~S~sK~l-g~~GG~l~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  385 (514)
                      ++++|.||++ |+.||++..++               ++.+.+.....+.. ..+......++...++.....+...+..
T Consensus       236 vvt~tTHKtlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~-qggph~~~IAa~Ava~~ea~~~~fk~Ya  314 (470)
T d1rv3a_         236 VVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAMTPEFKEYQ  314 (470)
T ss_dssp             EEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             eeeeehhhhccCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccc-cccchhhHHHHHHHHHHHhcChHHHHHH
Confidence            9999999999 77889988764               36666655433321 2233334444444455554455678889


Q ss_pred             HHHHHHHHHHHHHHHhCCCcccc--CCCcEEEEEeCC-CccHHHHHHHHHHhCCeEEecccCCCC--CCCCcEEEEEeC-
Q psy16848        386 AKHQDIVAYLRNELIQIGFPVEH--TPSHIIPIKIGN-PALNTKICDMLLKEKGHYVQPINYPTV--PVGEEKIRLAPT-  459 (514)
Q Consensus       386 ~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~l~~-~~~~~~~~~~Ll~~~GI~v~~~~~~~~--~~~~~~iRl~~~-  459 (514)
                      +++.++++.|.+.|.+.|++++.  ...+++.+.+.. +.+..+..+.| ++.||.+..-..|..  +...+.+|+..+ 
T Consensus       315 ~qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~L-e~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a  393 (470)
T d1rv3a_         315 RQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVL-EACSIACNKNTCPGDKSALRPSGLRLGTPA  393 (470)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHH-HHTTEECEEECCSSCSCTTSCCEEEEECHH
T ss_pred             HHHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCcHHHHHHHH-HHcCcEECCCcCCCCCCCCCCCeeEecCHH
Confidence            99999999999999999998863  456788887753 33455555556 799999874433332  223578999775 


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHH
Q psy16848        460 ---PFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       460 ---~~~t~e~id~~~~~l~~~l~~  480 (514)
                         ..+.++|++++.+.|.++++.
T Consensus       394 lTtrG~~e~dm~~iA~~I~~~l~~  417 (470)
T d1rv3a_         394 LTSRGLLEKDFQKVAHFIHRGIEL  417 (470)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHH
Confidence               577899999999999988753

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.74  E-value=1.1e-16  Score=163.52  Aligned_cols=308  Identities=12%  Similarity=0.008  Sum_probs=203.6

Q ss_pred             chHHHHHHHHHHhHcCCCc-----------EEEEeccccccccchhhccc--------cC---------CCceEEecCcc
Q psy16848         59 SLFHEKLEEDVAKLHQKEA-----------GLVFTSCYVANDSTLFTLGK--------MI---------PGLHYISDAGN  110 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~-----------~i~~~sGt~a~~~~l~~l~~--------~~---------~gd~v~~~~~~  110 (514)
                      ..+..++-+++++++|.+.           .+++++||++|+.++.+...        ..         +.-+|++++..
T Consensus       112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~  191 (476)
T d1js3a_         112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA  191 (476)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred             HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence            4556667788888888753           47788889999988866432        00         12268899999


Q ss_pred             chhhhhhhhcCCCCeeeccCCChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        111 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       111 h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |.|+..+++..|..+..++-++                       .|                                 
T Consensus       192 H~Si~ka~~~lGl~~~~v~~d~-----------------------~~---------------------------------  215 (476)
T d1js3a_         192 HSSVERAGLIGGVKLKAIPSDG-----------------------KF---------------------------------  215 (476)
T ss_dssp             CHHHHHHHHHHTCEEEEECCCT-----------------------TS---------------------------------
T ss_pred             cHHHHHHHHhcCceEEEeccCC-----------------------CC---------------------------------
Confidence            9999999998888765543310                       00                                 


Q ss_pred             cccCCCceeeecCchhhHHHHHhhccCCceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc--CCCceEEEEecC
Q psy16848        191 YGEHGAGIGERDGQLHNMDIISGTLVNPEVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD--VKIPKLVAFETV  268 (514)
Q Consensus       191 ~~~~~~g~~~~~G~~~~i~~~~~~l~~~~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~--~~~~~~vv~~~~  268 (514)
                                                                         .-|.+.+++.+++..  ...+.+|+.+..
T Consensus       216 ---------------------------------------------------~md~~~L~~~i~~~~~~g~~p~~VvataG  244 (476)
T d1js3a_         216 ---------------------------------------------------AMRASALQEALERDKAAGLIPFFVVATLG  244 (476)
T ss_dssp             ---------------------------------------------------CCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred             ---------------------------------------------------CcCHHHHHHHHHHHHhcCCCcEEEeecCC
Confidence                                                               004455555554432  223567888889


Q ss_pred             CCCCccccCHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCccccCCCccCceEEEcCCcccccCCC--eEEEecH-HH
Q psy16848        269 HSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL-YGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--GYIVGTK-NF  344 (514)
Q Consensus       269 ~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~-~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--G~l~~~~-~~  344 (514)
                      ++.+|.+-|+++|.++|++||+++++|.+|+... .....+.  ...+ ...+|.++.++||+++.+.  |+++.++ ..
T Consensus       245 tt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~--~~~g-i~~aDSit~d~HK~l~~P~~~g~~l~r~~~~  321 (476)
T d1js3a_         245 TTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH--LLNG-VEFADSFNFNPHKWLLVNFDCSAMWVKRRTD  321 (476)
T ss_dssp             CTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGG--GGTT-GGGCSEEEECHHHHSSCCSSCEEEEESCHHH
T ss_pred             CccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhh--hhcC-CcccceeeecCccccccCCcceeecccchHH
Confidence            9999999999999999999999999999998322 2222111  1223 3468999999999987643  6665553 33


Q ss_pred             HHHHHhhcCc---------------eEeccCC-cHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhC-CCccc
Q psy16848        345 IDTIRSYAAG---------------FIFTTSL-PPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQI-GFPVE  407 (514)
Q Consensus       345 ~~~l~~~~~~---------------~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  407 (514)
                      ..........               ..++... -......+..++..+..+++.++.++..++++++.+.|++. ++++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~  401 (476)
T d1js3a_         322 LTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC  401 (476)
T ss_dssp             HHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC
T ss_pred             HHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            3211100000               0001111 11223344566666667888899999999999999999998 77766


Q ss_pred             c-CCCcEEEEEeCCC-ccHHHHHHHHHHhCC-eEEecccCCCCCCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHc
Q psy16848        408 H-TPSHIIPIKIGNP-ALNTKICDMLLKEKG-HYVQPINYPTVPVGEEKIRLAPT-PFHTREMIDKFVTDLLAVWKSL  481 (514)
Q Consensus       408 ~-~~~~~~~i~l~~~-~~~~~~~~~Ll~~~G-I~v~~~~~~~~~~~~~~iRl~~~-~~~t~e~id~~~~~l~~~l~~~  481 (514)
                      . +.-+++.|++... ....++.+++. +.| +++.+...    .+..++|+++. ..+|++|++.+++.|+++.+++
T Consensus       402 ~~p~l~iV~Fr~~~~d~~n~~l~~~l~-~~G~~~~s~t~~----~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l  474 (476)
T d1js3a_         402 AEVTLGLVCFRLKGSDGLNEALLERIN-SARKIHLVPCRL----RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL  474 (476)
T ss_dssp             SCCCSSEEEEEESSCHHHHHHHHHHHH-HHTSCBCEEEEE----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEEccCChHHHHHHHHHHH-hcCCEEEeeeeE----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4 4556788887542 33457778886 555 55554332    34568999986 5578899999999999988764

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=5.2e-16  Score=153.24  Aligned_cols=211  Identities=14%  Similarity=0.100  Sum_probs=153.8

Q ss_pred             chHHHHHHHHHHhHcCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHH
Q psy16848         59 SLFHEKLEEDVAKLHQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQ  138 (514)
Q Consensus        59 ~~~~~~~~~~la~~~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~  138 (514)
                      .+-.+.+|++++++-|.+.+++++||..|+.. +..+..  +||+|++....|.....-+..                  
T Consensus        54 nPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~-~l~~l~--~gd~iv~~~~~yg~t~~~~~~------------------  112 (393)
T d1n8pa_          54 NPNRENLERAVAALENAQYGLAFSSGSATTAT-ILQSLP--QGSHAVSIGDVYGGTHRYFTK------------------  112 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHH-HHHTSC--SSCEEEEESSCCHHHHHHHHH------------------
T ss_pred             ChHHHHHHHHHHHHhCCceEEEecCchhHHHh-hhhccc--CCCeeeeeeeecccchhhhhh------------------
Confidence            57789999999999999999999999766644 445544  899999988888776533221                  


Q ss_pred             HHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhccCC
Q psy16848        139 VLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLVNP  218 (514)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~~~  218 (514)
                                                                                                      
T Consensus       113 --------------------------------------------------------------------------------  112 (393)
T d1n8pa_         113 --------------------------------------------------------------------------------  112 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeecchHHHHhhCCCCEEEecCCChhHHHHHHhhccCCCceEEEEecCCCCCccccCHHHHHHHHH----HcCCEEEE
Q psy16848        219 EVAIHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSH----QHGALTFV  294 (514)
Q Consensus       219 ~v~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~----~~gv~li~  294 (514)
                                .+...|.++.+++. +.    +.+++...+++++|++|+|.||+..+.|+++|+++|+    ++|+++|+
T Consensus       113 ----------~l~~~gi~~~~~~~-~~----~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvV  177 (393)
T d1n8pa_         113 ----------VANAHGVETSFTND-LL----NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV  177 (393)
T ss_dssp             ----------TSTTTCSCCEEESS-HH----HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEE
T ss_pred             ----------hhhcccceeEEeec-ch----HHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEE
Confidence                      11223444444432 22    2455566778999999999999999999999999999    67899999


Q ss_pred             eccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC----eEEEe-cHHHHHHHHhhcCceEeccCCcHHHHHHH
Q psy16848        295 DEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG----GYIVG-TKNFIDTIRSYAAGFIFTTSLPPTVLAGA  369 (514)
Q Consensus       295 Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G----G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~  369 (514)
                      |..++-...         ...+..++|+++.|.+|.+++.+    |+++. ++++.+.++..+..+  +..++|..+..+
T Consensus       178 DnT~atP~~---------~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~--G~~~~p~~a~ll  246 (393)
T d1n8pa_         178 DNTFLSPYI---------SNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAI--GAIPSPFDAWLT  246 (393)
T ss_dssp             ECTTTHHHH---------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHH
T ss_pred             ecCccCccc---------CCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhc--CCCCChHHHHHH
Confidence            999973322         12234589999999999998744    87765 456777776555444  446788777777


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q psy16848        370 REAIRILSSQEGVELRAKHQDIVAYLRNELIQ  401 (514)
Q Consensus       370 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  401 (514)
                      ...++-+     ..+.++..++...+.+.|+.
T Consensus       247 ~rgl~Tl-----~lR~~~~~~nA~~lA~~L~~  273 (393)
T d1n8pa_         247 HRGLKTL-----HLRVRQAALSANKIAEFLAA  273 (393)
T ss_dssp             HHHHTTH-----HHHHHHHHHHHHHHHHHHTS
T ss_pred             HhCCcch-----hhHHHHHHHHHHHHHHHHHh
Confidence            6666543     34677778888888888865

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.63  E-value=1.2e-15  Score=151.21  Aligned_cols=197  Identities=11%  Similarity=0.056  Sum_probs=121.0

Q ss_pred             CCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC--eEEEecHHHH
Q psy16848        268 VHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG--GYIVGTKNFI  345 (514)
Q Consensus       268 ~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G--G~l~~~~~~~  345 (514)
                      ++|.||...++.++.++|+++|+++++|.++++|..        +.+..  +.|+.+.|.+|.++++|  ++++..+.+.
T Consensus       145 v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~--------~id~~--~~di~~~s~~k~~~~~~~~~~~~~~~~~~  214 (361)
T d2c0ra1         145 LHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSR--------PFDLN--QFGLVYAGAQKNLGPSGVTVVIVREDLVA  214 (361)
T ss_dssp             EEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSS--------CCCGG--GCSEEEEETTTTTCCSSCEEEEEEGGGSS
T ss_pred             EEEecccceecceEEEeeccCCceEEEEeecccccc--------ccccc--cceeEEEecccccccccCcEEEEEhHHhh
Confidence            346789999999999999999999999999997664        22222  34555558899988755  3333333222


Q ss_pred             HHHHhhcCc---------eEeccCCcHHHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHHHHHHHhC-CC-cccc---CC
Q psy16848        346 DTIRSYAAG---------FIFTTSLPPTVLAGAREAIR-ILSSQEGVELRAKHQDIVAYLRNELIQI-GF-PVEH---TP  410 (514)
Q Consensus       346 ~~l~~~~~~---------~~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~---~~  410 (514)
                      +.-......         .......++.....+..+.. ............+.+.....+....... .. ....   .+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  294 (361)
T d2c0ra1         215 ESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSR  294 (361)
T ss_dssp             SCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGB
T ss_pred             hCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhc
Confidence            111000000         00011222333322233232 2323344445555555665666555554 11 1111   12


Q ss_pred             Cc-EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        411 SH-IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       411 ~~-~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                      ++ .+.+.+++..+..++.+.| +++||.+.+|+.+.     +.+|+++...++.||+++++++|+++.++
T Consensus       295 S~~~~~~~~~~~~~~~~~~~~L-~~~GI~~~~G~~~~-----g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         295 SDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRSV-----GGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             CSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTTT-----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCcccHHHHHHHH-HHCCCEEecCCCcC-----CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            22 5667888777778888888 69999998876432     23999999999999999999999998765

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.1e-15  Score=150.81  Aligned_cols=208  Identities=11%  Similarity=-0.010  Sum_probs=131.1

Q ss_pred             cCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCC
Q psy16848        256 DVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIG  335 (514)
Q Consensus       256 ~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~G  335 (514)
                      ..++++++.+.+.+|.||...+.+.+.  ++.+++++++|.+.+++..        +.+  ..+.|+++.|.+|.+++++
T Consensus       135 ~~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~--------~vd--~~~~dv~~~ss~k~~~~~~  202 (360)
T d1bjna_         135 WQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSR--------PID--VSRYGVIYAGAQKNIGPAG  202 (360)
T ss_dssp             CCCCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSS--------CCC--GGGCSEEEEETTTTTSSTT
T ss_pred             hccCCceeEEEecccccccCcccccee--cccccceeeeeeeccccce--------eee--eccceeEEEEcccccccCC
Confidence            455677888888889999998876553  5677999999999986543        222  2356888889999997644


Q ss_pred             --eEEEecHHHHHHHHhh----------cCceEeccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16848        336 --GYIVGTKNFIDTIRSY----------AAGFIFTTSLPPTVLAGAREAIRILSSQEGVELRAKHQDIVAYLRNELIQIG  403 (514)
Q Consensus       336 --G~l~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  403 (514)
                        ++++..+...+.....          .....+..+.++....+....+............++.+.....+.+.+...+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (360)
T d1bjna_         203 LTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD  282 (360)
T ss_dssp             CEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccc
Confidence              4445443322111100          0000011223333333333334433334445555556666666666666653


Q ss_pred             Cccc-cC---C-CcEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy16848        404 FPVE-HT---P-SHIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       404 ~~~~-~~---~-~~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l  478 (514)
                      .... ..   . ...+.+.++++....++.+.| +++||.+..|+.+.     +.+|+++...+|+|||++++++|+++.
T Consensus       283 ~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l-~~~Gi~~~~G~~~~-----g~~Ris~~~~~t~edV~~li~~l~e~~  356 (360)
T d1bjna_         283 FYRNDVAKRNRSRMNVPFQLADSALDKLFLEES-FAAGLHALKGHRVV-----GGMRASIYNAMPLEGVKALTDFMVEFE  356 (360)
T ss_dssp             SEECCBCGGGBCSSEEEEEESSGGGHHHHHHHH-HHTTEECCBCCTTT-----CSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             cccccCCcccccceEEEEEcCCcccHHHHHHHH-HHCCCEeecCCCcc-----CeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            3221 11   1 236778888877788888888 59999988765422     249999998999999999999999987


Q ss_pred             HHc
Q psy16848        479 KSL  481 (514)
Q Consensus       479 ~~~  481 (514)
                      ++.
T Consensus       357 ~~~  359 (360)
T d1bjna_         357 RRH  359 (360)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            653

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.56  E-value=1.6e-14  Score=142.61  Aligned_cols=200  Identities=10%  Similarity=0.018  Sum_probs=118.9

Q ss_pred             cCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccCCCeEEEecHHHHH
Q psy16848        267 TVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGNIGGYIVGTKNFID  346 (514)
Q Consensus       267 ~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~~GG~l~~~~~~~~  346 (514)
                      +..|.+|...|+++|.++|+++|+++|+|.++++|..        +.+...++.|++.++-+|++++.+|+++.++...+
T Consensus       144 ~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~--------~id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~  215 (360)
T d1w23a_         144 YLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSR--------PLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNT  215 (360)
T ss_dssp             EEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSS--------CCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCS
T ss_pred             eeEecCCccccceeeeeccccceeeEEeecccccccc--------ccccccccceEEeeccccccCCcceeeEechhhhc
Confidence            4456689999999999999999999999999997764        22222457788866666655542355555443322


Q ss_pred             HHHhhcCce---------EeccCCcHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHHhC-CCccc----cCCC
Q psy16848        347 TIRSYAAGF---------IFTTSLPPTVLAGAREAIRILSSQE-GVELRAKHQDIVAYLRNELIQI-GFPVE----HTPS  411 (514)
Q Consensus       347 ~l~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~----~~~~  411 (514)
                      .........         ......+..........+....... ......+.+............. .....    ..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS  295 (360)
T d1w23a_         216 KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRS  295 (360)
T ss_dssp             CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBC
T ss_pred             ccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcc
Confidence            111110000         0011222233333333333322222 2333333344444444444433 22211    1122


Q ss_pred             -cEEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy16848        412 -HIIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMIDKFVTDLLAVWKS  480 (514)
Q Consensus       412 -~~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~id~~~~~l~~~l~~  480 (514)
                       ..+.+.+++.....++.+.| .++||.+..|+.+.     +.+|+++...+|.||++++++.|+++.++
T Consensus       296 ~~vvsf~i~~~~~~~~~~~~l-~~~GI~~~~G~~~~-----ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         296 LMNVTFNLRNEELNQQFLAKA-KEQGFVGLNGHRSV-----GGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             SSEEEEECSSHHHHHHHHHHH-HHTTEESCBCCTTT-----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEcCCCccHHHHHHHH-HHCCCeeeeCCCcc-----CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence             26778888766677888888 59999998776533     24999987778999999999999998764

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=9.6e-14  Score=138.37  Aligned_cols=206  Identities=19%  Similarity=0.205  Sum_probs=139.8

Q ss_pred             CCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEecccc-ccccCCCCCCccccCCCccCceEEEcCCcccccC--
Q psy16848        257 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHA-VGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN--  333 (514)
Q Consensus       257 ~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~-~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~--  333 (514)
                      .++++++++++| |..|..-+++++.+++++.|.+++.|..-. ++.+.        ..+ +.++|+++++ +|.||.  
T Consensus       194 ~~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~--------~Pg-~~GaDi~~g~-~q~fg~p~  262 (437)
T d1wyua1         194 GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK--------PPG-AYGADIAVGD-GQSLGLPM  262 (437)
T ss_dssp             CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC--------CHH-HHTCSEEEEE-CTTTTCCC
T ss_pred             ccceeEEEEccc-cccccccchHHHHHHhhhccceEEeeechhhhhccc--------ccc-ccccceEeec-cceecccc
Confidence            456899999999 456888899999999999999888775433 22221        111 4488999998 665543  


Q ss_pred             ----CC-eEEEecHHHHHHHHhhcCc----------eEe-----------------ccCCcHHHHHHHHHHHHHhhhchH
Q psy16848        334 ----IG-GYIVGTKNFIDTIRSYAAG----------FIF-----------------TTSLPPTVLAGAREAIRILSSQEG  381 (514)
Q Consensus       334 ----~G-G~l~~~~~~~~~l~~~~~~----------~~~-----------------~~~~~~~~~~a~~~~l~~~~~~~~  381 (514)
                          +| |++.+++++...+.....+          +..                 ..+.....+..+...+..+..+++
T Consensus       263 g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL  342 (437)
T d1wyua1         263 GFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGL  342 (437)
T ss_dssp             GGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccH
Confidence                33 9999998877655321110          100                 012233333333444555556788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCccccCCCc--EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEe
Q psy16848        382 VELRAKHQDIVAYLRNELIQI-GFPVEHTPSH--IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAP  458 (514)
Q Consensus       382 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~  458 (514)
                      .++.++...+++|+.+.|.+. |+....+...  -|.+.++  .+..++.++|+ ++|+......++.  ..++.+.+++
T Consensus       343 ~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~--~~~~~i~k~L~-d~G~~~~~~~~~~--~~~~~lli~~  417 (437)
T d1wyua1         343 REVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP--KDPEAVRRALA-ERGFHGATPVPRE--YGENLALFAA  417 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS--SCHHHHHHHHH-HTTCCCCEECCTT--SCSSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECC--CCHHHHHHHHH-hCCCCCCcccccC--CCCCeEEEec
Confidence            999999999999999999987 7765433222  2334443  45789999996 9999753222211  2357899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy16848        459 TPFHTREMIDKFVTDLLAVW  478 (514)
Q Consensus       459 ~~~~t~e~id~~~~~l~~~l  478 (514)
                      +-..|++|+|+++++|++++
T Consensus       418 TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         418 TELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             CTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999873

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=2.1e-10  Score=115.30  Aligned_cols=216  Identities=16%  Similarity=0.134  Sum_probs=148.7

Q ss_pred             ccCCCceEEEEecCCCCCccccCHHHHHHHHHHcCCEEEEeccccccccCCCCCCccccCCCccCceEEEcCCcccccC-
Q psy16848        255 MDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLGKAFGN-  333 (514)
Q Consensus       255 ~~~~~~~~vv~~~~~nptG~~~~l~~l~~l~~~~gv~li~Dea~~~g~~g~~~~~~~~~~~~~~~~di~~~S~sK~lg~-  333 (514)
                      ...+++.++++.+|++..+.....+++.+++++++..+++|.+......+     +.+..  ....|+++...++.+|. 
T Consensus       198 ~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~-----l~~p~--~~g~div~vg~~q~~G~P  270 (471)
T d1wyub1         198 ELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMG-----WARPG--DMGFDVVHLNLHKTFTVP  270 (471)
T ss_dssp             HCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTT-----TCCHH--HHTCSEEECCTTTTTCCC
T ss_pred             hhhccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhh-----ccccC--cccccccccccccccccc
Confidence            34456788999999777655556899999999999999988765522221     11111  22567777777776654 


Q ss_pred             -----CC-eEEEecHHHHHHHHhhc-----CceE------------eccCCcHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy16848        334 -----IG-GYIVGTKNFIDTIRSYA-----AGFI------------FTTSLPPTVLAGAREAIRILSSQEGVELRAKHQD  390 (514)
Q Consensus       334 -----~G-G~l~~~~~~~~~l~~~~-----~~~~------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  390 (514)
                           +| |++.++++++..+.-..     ..+.            ...+.+.+.+.++...+..+..+++.++.+...+
T Consensus       271 ~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~  350 (471)
T d1wyub1         271 HGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVL  350 (471)
T ss_dssp             CTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence                 23 88999988876654110     0000            0112333444444445666667899999999999


Q ss_pred             HHHHHHHHHHhCCCccccCCCc---EEEEEeCCCccHHHHHHHHHHhCCeEEecccCCCCCCCCcEEEEEeCCCCCHHHH
Q psy16848        391 IVAYLRNELIQIGFPVEHTPSH---IIPIKIGNPALNTKICDMLLKEKGHYVQPINYPTVPVGEEKIRLAPTPFHTREMI  467 (514)
Q Consensus       391 ~~~~l~~~L~~~g~~~~~~~~~---~~~i~l~~~~~~~~~~~~Ll~~~GI~v~~~~~~~~~~~~~~iRl~~~~~~t~e~i  467 (514)
                      +..|+++.|++.|+.+.. .++   -|.+.++.+.+..++.++|+ ++|+.....++|  ...++.+.++++-.+|++||
T Consensus       351 ~A~Yla~~L~~~G~~~~~-~~~ff~EFvv~~~~~~~~~~i~k~L~-~~G~~~~~~~~p--~~~~~~llv~vTE~~tkedI  426 (471)
T d1wyub1         351 NARYLKELLKEKGYRVPY-DGPSMHEFVAQPPEGFRALDLAKGLL-ELGFHPPTVYFP--LIVKEALMVEPTETEAKETL  426 (471)
T ss_dssp             HHHHHHHHHHHTTCBCSS-CSSCCSCEEEBCSTTCCHHHHHHHHH-HTTCCCCEESCS--TTSTTCEEECCCTTSCHHHH
T ss_pred             HHHHHHHHHhhcCceecc-CcceeeEEeecCCCCCCHHHHHHHHH-HcCCCCCcccCc--CCCCCeEEEecCCCCCHHHH
Confidence            999999999888887643 333   24466666566788999997 899975333332  23456788999999999999


Q ss_pred             HHHHHHHHHHHHHc
Q psy16848        468 DKFVTDLLAVWKSL  481 (514)
Q Consensus       468 d~~~~~l~~~l~~~  481 (514)
                      |+++++|++++++.
T Consensus       427 D~lv~aL~~i~~e~  440 (471)
T d1wyub1         427 EAFAEAMGALLKKP  440 (471)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00043  Score=67.05  Aligned_cols=109  Identities=23%  Similarity=0.288  Sum_probs=75.8

Q ss_pred             HHHHHhHcCCCcEEEEeccccccc-cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhcc
Q psy16848         66 EEDVAKLHQKEAGLVFTSCYVAND-STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD  144 (514)
Q Consensus        66 ~~~la~~~~~~~~i~~~sGt~a~~-~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  144 (514)
                      ...+..+.+....++.-...++.. ....    ..+...+....+....+...++....+..                  
T Consensus       112 ~~~i~al~~~~d~v~~d~~~h~si~~g~~----~~~~~~~~~~hnd~~~le~~l~~~~~~~~------------------  169 (383)
T d1bs0a_         112 QAVIAAMMAKEDRIAADRLSHASLLEAAS----LSPSQLRRFAHNDVTHLARLLASPCPGQQ------------------  169 (383)
T ss_dssp             HHHHHHHCCTTCEEEEETTCCHHHHHHHH----TSSSEEEEECTTCHHHHHHHHHSCCSSCE------------------
T ss_pred             HHHHHhhcCCCceEEeeccccHHHhhccc----cCCCcceEecchHHHHHHHHhcccCCCce------------------
Confidence            344555666677777776666532 2221    22555666655554444443433322211                  


Q ss_pred             cCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeee
Q psy16848        145 VKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGER  201 (514)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~  201 (514)
                           +|+++|+|+++|+++|++++.++++++|+.++||++|+.|+.|.+|.|+.+.
T Consensus       170 -----~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~  221 (383)
T d1bs0a_         170 -----MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWL  221 (383)
T ss_dssp             -----EEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHH
T ss_pred             -----EEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHH
Confidence                 4789999999999999999999999999999999999999999999885433

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=2e-05  Score=77.24  Aligned_cols=126  Identities=27%  Similarity=0.361  Sum_probs=87.5

Q ss_pred             HHHHhHcCCCcEEEEeccccccc-cchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhccc
Q psy16848         67 EDVAKLHQKEAGLVFTSCYVAND-STLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMDV  145 (514)
Q Consensus        67 ~~la~~~~~~~~i~~~sGt~a~~-~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  145 (514)
                      ..+..+.+....++...+.++.. ..+. +   .......+..+                   ..++.+.+.+.+.....
T Consensus       120 ~~i~~l~~~~d~i~~d~~~h~s~~~G~~-~---~~a~~~~~~~~-------------------d~~~le~~~~~~~~~~~  176 (401)
T d1fc4a_         120 GLFETLLGAEDAIISDALNHASIIDGVR-L---CKAKRYRYANN-------------------DMQELEARLKEAREAGA  176 (401)
T ss_dssp             TTHHHHCCTTCEEEEETTCCHHHHHHHH-T---SCSEEEEECTT-------------------CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCCcEEEeCCcchHHHHcccc-c---cCceEEEEcCC-------------------ChHHHHHHHHHhhhccc
Confidence            34455667677777776666532 2221 1   13344443332                   23356666666666655


Q ss_pred             CCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccccccCCCceeeecCchhhHHHHHhhcc
Q psy16848        146 KIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLYGEHGAGIGERDGQLHNMDIISGTLV  216 (514)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~i~~~~~~l~  216 (514)
                      .. .+|+++|+|+++|+++|+++++++++++|+.+.+|++|+.|..|.+|.|+.+..|....++++..++.
T Consensus       177 ~~-~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~  246 (401)
T d1fc4a_         177 RH-VLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLG  246 (401)
T ss_dssp             SS-EEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESS
T ss_pred             Cc-eEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecc
Confidence            54 68899999999999999999999999999999999999999999999997766665554444444443

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.08  E-value=0.27  Score=46.60  Aligned_cols=34  Identities=53%  Similarity=0.921  Sum_probs=28.0

Q ss_pred             ecchHHHHhhCCCCEEEecCCChhHHHHHHhhcc
Q psy16848        223 HASMIQGIRNSSAPKIIYRHNDVNHLTQVLENMD  256 (514)
Q Consensus       223 ~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~  256 (514)
                      |.+....+++.+++++.++++|.+.+++.++...
T Consensus       141 Hasi~~g~~ls~a~~~~f~Hnd~~~l~~l~~~~~  174 (396)
T d2bwna1         141 HASMIEGIKRNAGPKRIFRHNDVAHLRELIAADD  174 (396)
T ss_dssp             CHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSC
T ss_pred             hhccchhhhccccCceEeecchHHHhhhHHhhhc
Confidence            3367788889999999999999999888877643

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.52  E-value=0.25  Score=47.49  Aligned_cols=59  Identities=10%  Similarity=0.040  Sum_probs=51.0

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeeccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGL  190 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (514)
                      |+++|++.|.+....+...|++.......|.+.|..++.++++++|+.+.+|.+|+.+.
T Consensus       179 d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~  237 (445)
T d3bc8a1         179 DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS  237 (445)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred             CHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhh
Confidence            89999999998777667777777666677999999999999999999999999887554

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=90.49  E-value=0.08  Score=50.24  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             ChHHHHHHHHhcccCCCcEEEeeccccccCCccchhHHhhhhhhcCceEEeecccccccc
Q psy16848        132 DVNHLTQVLENMDVKIPKLVAFETVHSMTGAICPLKELCEVSHQHGALTFVDEVHAVGLY  191 (514)
Q Consensus       132 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  191 (514)
                      |.+.+++.+    +.++++|.++++...+|...|.+++.++++++|+.+.+|..|+.|..
T Consensus       132 d~~~~~~~i----~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~  187 (391)
T d1p3wa_         132 DLKELEAAM----RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL  187 (391)
T ss_dssp             CHHHHHHHC----CTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTB
T ss_pred             cHHHHHHhC----CCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCc
Confidence            456565554    45678999999998999999999999999999999999999987754

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=84.41  E-value=2.6  Score=39.28  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=66.8

Q ss_pred             HHHHHHhH-cCCCcEEEEeccccccccchhhccccCCCceEEecCccchhhhhhhhcCCCCeeeccCCChHHHHHHHHhc
Q psy16848         65 LEEDVAKL-HQKEAGLVFTSCYVANDSTLFTLGKMIPGLHYISDAGNHASMIQGIRNSSAPKIIYRHNDVNHLTQVLENM  143 (514)
Q Consensus        65 ~~~~la~~-~~~~~~i~~~sGt~a~~~~l~~l~~~~~gd~v~~~~~~h~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  143 (514)
                      ..=++++. .+....+.+..|.++.......+..    +         .............+..++.+|.+.|++.+.+ 
T Consensus       111 ~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~----~---------~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~-  176 (387)
T d1vefa1         111 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTW----E---------PKYREPFLPLVEPVEFIPYNDVEALKRAVDE-  176 (387)
T ss_dssp             HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCC----C---------HHHHGGGCSCSSCEEEECTTCHHHHHHHCCT-
T ss_pred             HHHHHHHhhcccceecccccCCCCCccceEeccC----C---------ccccCCCCCCCCCceEeCCCCHHHHHHhcCC-
Confidence            33344444 4677777777777774433323321    1         1111111122234566778899999887753 


Q ss_pred             ccCCCcEEEeeccccccCCccc----hhHHhhhhhhcCceEEeecccc
Q psy16848        144 DVKIPKLVAFETVHSMTGAICP----LKELCEVSHQHGALTFVDEVHA  187 (514)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  187 (514)
                         ....++++-+....|...|    +.+++++|+++|+.+.+||.+.
T Consensus       177 ---~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t  221 (387)
T d1vefa1         177 ---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  221 (387)
T ss_dssp             ---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ---CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc
Confidence               3445677777766676666    8889999999999999999875

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.84  E-value=0.67  Score=42.64  Aligned_cols=45  Identities=9%  Similarity=0.010  Sum_probs=35.2

Q ss_pred             eeeecCchhhHHHHHhhccCC--ceeeec----chHHHHhhCCCCEEEecC
Q psy16848        198 IGERDGQLHNMDIISGTLVNP--EVAIHA----SMIQGIRNSSAPKIIYRH  242 (514)
Q Consensus       198 ~~~~~G~~~~i~~~~~~l~~~--~v~~~~----~~~~~~~~~g~~~~~v~~  242 (514)
                      +...+|+++++..++.++++|  +++++.    +....+...|++++.+|.
T Consensus        65 ~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~  115 (364)
T d2e7ja1          65 ARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPK  115 (364)
T ss_dssp             EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECC
T ss_pred             EEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeee
Confidence            566789999999999999998  677765    334556788888877764