Psyllid ID: psy16867

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
MRGKVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFSFLL
ccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccEEcccccHHHHccccccEEccccccccEEccccccccHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHcccEEEEEccccccccccc
ccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccEccccccccccccccccEccccccccccHHHHHccHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHcccEEEEEEcccccHHHHcccccEEEccEEEEEEEEccccEEEEcccccccHHHHcccHHHHHHcccccccccccHHHHccccccccccccccccccEEEEcccccHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHccccEEEEEccccccHccc
mrgkvppdvtsrsisfipkhkpveesdINKLKQFIEKYNKILVVTGagistesgipdyrsegvglyarsdkrpvqfQDFLKSRRVRIRYWARnfvgwprfssfqpnanHYALKQMEDNEKLSYIITQNvdglhykagnKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDlnpdlmiesqemrpdgdvemseetiskfhvpqcphchgdlkpdivffgdniprhrMEKIDHLVRSCDGVLVLGSSLTVPILVKEHakgylgkgnvqttpfsfll
mrgkvppdvtsrsisfipkhkpveesdINKLKQFIEKYNKILVVTgagistesgipdyRSEGVGlyarsdkrpvqfqdflksrrvrIRYWARNfvgwprfssfQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEhakgylgkgnvqttpfsfll
MRGKVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFSFLL
***************************INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNP**********************SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQT*******
*****************************KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFS*LL
***********RSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFSFLL
************SISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPF****
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SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRGKVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFSFLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query275 2.2.26 [Sep-21-2011]
Q8IRR5312 NAD-dependent protein dea yes N/A 0.810 0.714 0.569 2e-75
Q8R216333 NAD-dependent protein dea yes N/A 0.850 0.702 0.517 7e-69
Q1JQC6315 NAD-dependent protein dea yes N/A 0.850 0.742 0.504 8e-68
Q9Y6E7314 NAD-dependent protein dea yes N/A 0.850 0.745 0.504 8e-68
Q20480287 NAD-dependent protein dea yes N/A 0.850 0.815 0.464 1e-62
Q20481287 NAD-dependent protein dea no N/A 0.850 0.815 0.417 1e-56
Q8PQK3293 NAD-dependent protein dea yes N/A 0.825 0.774 0.440 4e-55
Q8PDM9293 NAD-dependent protein dea yes N/A 0.789 0.740 0.45 7e-54
Q4UZX0293 NAD-dependent protein dea yes N/A 0.789 0.740 0.45 7e-54
Q94AQ6373 NAD-dependent protein dea yes N/A 0.872 0.643 0.423 2e-53
>sp|Q8IRR5|SIR4_DROME NAD-dependent protein deacetylase Sirt4 OS=Drosophila melanogaster GN=Sirt4 PE=2 SV=2 Back     alignment and function desciption
 Score =  281 bits (720), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 166/223 (74%)

Query: 16  FIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQ 75
           ++P HKPV E DI +L+ F+     +LV+TGAGISTESGIPDYRSEGVGLYARS+ +PVQ
Sbjct: 23  YVPHHKPVVEDDIKRLEDFLLSKPNVLVLTGAGISTESGIPDYRSEGVGLYARSNHKPVQ 82

Query: 76  FQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYK 135
             +F+KS  VR RYWARNFVGWP+FS+ QPNA H+AL + E  E++  ++TQNVD LH K
Sbjct: 83  HMEFVKSSAVRKRYWARNFVGWPKFSATQPNATHHALARFEREERVQAVVTQNVDRLHTK 142

Query: 136 AGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEET 195
           AG++ V+E+HG+ + V CL C+Y IDRH+FQ IL  LNP        +RPDGDVE+  E 
Sbjct: 143 AGSRNVVEVHGSGYVVKCLSCEYRIDRHEFQSILASLNPAFKDAPDMIRPDGDVEIPLEY 202

Query: 196 ISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCD 238
           I  F +P+C  C GDLKP+IVFFGD++PR R+++I  +V + D
Sbjct: 203 IENFRIPECTQCGGDLKPEIVFFGDSVPRPRVDQIAGMVYNSD 245
NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q8R216|SIR4_MOUSE NAD-dependent protein deacetylase sirtuin-4 OS=Mus musculus GN=Sirt4 PE=1 SV=3 Back     alignment and function description
>sp|Q1JQC6|SIR4_BOVIN NAD-dependent protein deacetylase sirtuin-4 OS=Bos taurus GN=SIRT4 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6E7|SIR4_HUMAN NAD-dependent protein deacetylase sirtuin-4 OS=Homo sapiens GN=SIRT4 PE=1 SV=1 Back     alignment and function description
>sp|Q20480|SIR41_CAEEL NAD-dependent protein deacetylase sir-2.2 OS=Caenorhabditis elegans GN=sir-2.2 PE=2 SV=1 Back     alignment and function description
>sp|Q20481|SIR42_CAEEL NAD-dependent protein deacetylase sir-2.3 OS=Caenorhabditis elegans GN=sir-2.3 PE=3 SV=1 Back     alignment and function description
>sp|Q8PQK3|NPD_XANAC NAD-dependent protein deacetylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=cobB PE=3 SV=2 Back     alignment and function description
>sp|Q8PDM9|NPD_XANCP NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=cobB PE=3 SV=1 Back     alignment and function description
>sp|Q4UZX0|NPD_XANC8 NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=cobB PE=3 SV=1 Back     alignment and function description
>sp|Q94AQ6|SIR4_ARATH NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
170030791309 NAD-dependent deacetylase sirtuin-4 [Cul 0.88 0.783 0.573 2e-82
270008456 612 hypothetical protein TcasGA2_TC014968 [T 0.850 0.382 0.602 3e-82
328723205333 PREDICTED: NAD-dependent ADP-ribosyltran 0.854 0.705 0.616 6e-82
91085237302 PREDICTED: similar to Sirt4 CG3187-PC [T 0.850 0.774 0.602 1e-81
383856362325 PREDICTED: NAD-dependent ADP-ribosyltran 0.850 0.72 0.589 3e-81
347970599315 AGAP013148-PA [Anopheles gambiae str. PE 0.861 0.752 0.583 9e-81
345481105318 PREDICTED: NAD-dependent ADP-ribosyltran 0.861 0.745 0.569 4e-80
239792208333 ACYPI009170 [Acyrthosiphon pisum] 0.854 0.705 0.603 4e-80
312375759313 hypothetical protein AND_13748 [Anophele 0.869 0.763 0.570 5e-80
380017528286 PREDICTED: NAD-dependent ADP-ribosyltran 0.854 0.821 0.570 2e-79
>gi|170030791|ref|XP_001843271.1| NAD-dependent deacetylase sirtuin-4 [Culex quinquefasciatus] gi|167868390|gb|EDS31773.1| NAD-dependent deacetylase sirtuin-4 [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 140/244 (57%), Positives = 189/244 (77%), Gaps = 2/244 (0%)

Query: 8   DVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYA 67
           + +S S+ ++P H+P  ESD+ +L++F++    ILV+TGAGISTESGIPDYRSEGVGLYA
Sbjct: 17  EYSSGSMKYVPVHEPAIESDLRRLEKFLDDKPHILVLTGAGISTESGIPDYRSEGVGLYA 76

Query: 68  RSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQ 127
           RS+ +P+Q  DF+KS  VR RYWARN+VGWPRFS+ +PN  HY L ++E  +++S I+TQ
Sbjct: 77  RSNHKPIQHGDFVKSEAVRKRYWARNYVGWPRFSAIEPNVTHYTLARLEREQRISGIVTQ 136

Query: 128 NVDGLHYKAGNKKVIEMHGTAFRVMCL--GCDYEIDRHKFQKILEDLNPDLMIESQEMRP 185
           NVD LH KAG+K V+E+HG+ + VMC+  GCDY I RH+FQ+IL+ LNP +  +S  MRP
Sbjct: 137 NVDKLHTKAGSKSVVELHGSGYTVMCIAKGCDYTIPRHEFQRILDQLNPHMEDKSTMMRP 196

Query: 186 DGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGS 245
           DGDVE+ +E +  F +P+CP C G LKP+IVFFGDN+P  R+E++  ++   DGVLVLGS
Sbjct: 197 DGDVELPQEYVDNFKIPECPQCGGALKPEIVFFGDNVPMPRIERVVRMIIESDGVLVLGS 256

Query: 246 SLTV 249
           SLTV
Sbjct: 257 SLTV 260

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270008456|gb|EFA04904.1| hypothetical protein TcasGA2_TC014968 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328723205|ref|XP_001949818.2| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91085237|ref|XP_972967.1| PREDICTED: similar to Sirt4 CG3187-PC [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383856362|ref|XP_003703678.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|347970599|ref|XP_003436605.1| AGAP013148-PA [Anopheles gambiae str. PEST] gi|333466745|gb|EGK96359.1| AGAP013148-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|345481105|ref|XP_003424289.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|239792208|dbj|BAH72471.1| ACYPI009170 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|312375759|gb|EFR23065.1| hypothetical protein AND_13748 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|380017528|ref|XP_003692705.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like, partial [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
FB|FBgn0029783312 Sirt4 "Sirt4" [Drosophila mela 0.869 0.766 0.575 2.5e-74
RGD|1310413311 Sirt4 "sirtuin 4" [Rattus norv 0.850 0.752 0.521 4.7e-64
MGI|MGI:1922637333 Sirt4 "sirtuin 4 (silent matin 0.850 0.702 0.517 2e-63
UNIPROTKB|F1PU57312 SIRT4 "NAD-dependent protein d 0.865 0.762 0.506 3.3e-63
UNIPROTKB|Q1JQC6315 SIRT4 "NAD-dependent protein d 0.850 0.742 0.504 2.3e-62
UNIPROTKB|F1RJK2314 SIRT4 "NAD-dependent protein d 0.850 0.745 0.5 2.3e-62
UNIPROTKB|Q9Y6E7314 SIRT4 "NAD-dependent protein d 0.850 0.745 0.504 3.8e-62
UNIPROTKB|F1NB70294 SIRT4 "Uncharacterized protein 0.869 0.812 0.476 2.7e-61
ZFIN|ZDB-GENE-041010-65310 zgc:103539 "zgc:103539" [Danio 0.850 0.754 0.474 1.9e-58
WB|WBGene00004801287 sir-2.2 [Caenorhabditis elegan 0.850 0.815 0.468 1.1e-57
FB|FBgn0029783 Sirt4 "Sirt4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 138/240 (57%), Positives = 179/240 (74%)

Query:    10 TSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARS 69
             T+R   ++P HKPV E DI +L+ F+     +LV+TGAGISTESGIPDYRSEGVGLYARS
Sbjct:    18 TARQ-EYVPHHKPVVEDDIKRLEDFLLSKPNVLVLTGAGISTESGIPDYRSEGVGLYARS 76

Query:    70 DKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNV 129
             + +PVQ  +F+KS  VR RYWARNFVGWP+FS+ QPNA H+AL + E  E++  ++TQNV
Sbjct:    77 NHKPVQHMEFVKSSAVRKRYWARNFVGWPKFSATQPNATHHALARFEREERVQAVVTQNV 136

Query:   130 DGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDV 189
             D LH KAG++ V+E+HG+ + V CL C+Y IDRH+FQ IL  LNP        +RPDGDV
Sbjct:   137 DRLHTKAGSRNVVEVHGSGYVVKCLSCEYRIDRHEFQSILASLNPAFKDAPDMIRPDGDV 196

Query:   190 EMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
             E+  E I  F +P+C  C GDLKP+IVFFGD++PR R+++I  +V + DG+LVLGSSL V
Sbjct:   197 EIPLEYIENFRIPECTQCGGDLKPEIVFFGDSVPRPRVDQIAGMVYNSDGLLVLGSSLLV 256
GO:0070403 "NAD+ binding" evidence=IEA
RGD|1310413 Sirt4 "sirtuin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1922637 Sirt4 "sirtuin 4 (silent mating type information regulation 2 homolog) 4 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU57 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JQC6 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJK2 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6E7 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NB70 SIRT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-65 zgc:103539 "zgc:103539" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00004801 sir-2.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q89EA6NPD2_BRAJA3, ., 5, ., 1, ., -0.42530.78540.7912yesN/A
Q72RR0NPD_LEPIC3, ., 5, ., 1, ., -0.32080.69090.7723yesN/A
Q20480SIR41_CAEEL3, ., 5, ., 1, ., -0.46410.85090.8153yesN/A
Q9UZE7NPD_PYRAB3, ., 5, ., 1, ., -0.31220.77810.856yesN/A
Q9RL35NPD1_STRCO3, ., 5, ., 1, ., -0.40260.80360.7391yesN/A
B0RM75NPD_XANCB3, ., 5, ., 1, ., -0.44540.78900.7406yesN/A
Q8PQK3NPD_XANAC3, ., 5, ., 1, ., -0.44060.82540.7747yesN/A
Q5KZE8NPD2_GEOKA3, ., 5, ., 1, ., -0.34370.680.7570yesN/A
Q9WYW0NPD_THEMA3, ., 5, ., 1, ., -0.3120.76720.8577yesN/A
Q8R216SIR4_MOUSE2, ., 4, ., 2, ., -0.51700.85090.7027yesN/A
A0QDH4NPD1_MYCA13, ., 5, ., 1, ., -0.42320.73810.7198yesN/A
B5YJW3NPD_THEYD3, ., 5, ., 1, ., -0.35580.70180.7539yesN/A
O58669NPD_PYRHO3, ., 5, ., 1, ., -0.3080.76720.8473yesN/A
Q4UZX0NPD_XANC83, ., 5, ., 1, ., -0.450.78900.7406yesN/A
Q8IRR5SIR4_DROME3, ., 5, ., 1, ., -0.56950.81090.7147yesN/A
Q94AQ6SIR4_ARATH3, ., 5, ., 1, ., -0.42300.87270.6434yesN/A
Q5JG47NPD_PYRKO3, ., 5, ., 1, ., -0.32580.680.7276yesN/A
Q97MB4NPD_CLOAB3, ., 5, ., 1, ., -0.31850.69090.7755yesN/A
Q8U1Q1NPD_PYRFU3, ., 5, ., 1, ., -0.30030.77810.856yesN/A
Q8XNS6NPD_CLOPE3, ., 5, ., 1, ., -0.33910.67270.7581yesN/A
Q7WLE5NPD_BORBR3, ., 5, ., 1, ., -0.41960.80360.8065yesN/A
C6A243NPD_THESM3, ., 5, ., 1, ., -0.31390.69090.7450yesN/A
Q4JBN2NPD_SULAC3, ., 5, ., 1, ., -0.32150.77450.8452yesN/A
Q882K4NPD3_PSESM3, ., 5, ., 1, ., -0.45190.73450.7188yesN/A
Q67KQ0NPD_SYMTH3, ., 5, ., 1, ., -0.31850.77090.8446yesN/A
Q1JQC6SIR4_BOVIN2, ., 4, ., 2, ., -0.50420.85090.7428yesN/A
Q8PDM9NPD_XANCP3, ., 5, ., 1, ., -0.450.78900.7406yesN/A
Q6N6U0NPD_RHOPA3, ., 5, ., 1, ., -0.32090.74900.8142yesN/A
Q8TWG0NPD_METKA3, ., 5, ., 1, ., -0.30760.68720.756yesN/A
Q7VX46NPD_BORPE3, ., 5, ., 1, ., -0.41510.80360.8065yesN/A
O30124NPD2_ARCFU3, ., 5, ., 1, ., -0.30530.70540.7667yesN/A
Q8F3Z6NPD_LEPIN3, ., 5, ., 1, ., -0.32080.69090.7723yesN/A
Q9Y6E7SIR4_HUMAN2, ., 4, ., 2, ., -0.50420.85090.7452yesN/A
Q8R984NPD2_THETN3, ., 5, ., 1, ., -0.34840.69090.76yesN/A
Q8ZU41NPD1_PYRAE3, ., 5, ., 1, ., -0.30940.69450.7519yesN/A
Q4QB33SIR4_LEIMA3, ., 5, ., 1, ., -0.3480.78540.675yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.2LOW CONFIDENCE prediction!
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
cd01409260 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic 1e-110
PRK05333285 PRK05333, PRK05333, NAD-dependent deacetylase; Pro 3e-88
cd01407218 cd01407, SIR2-fam, SIR2 family of proteins include 3e-74
PRK00481242 PRK00481, PRK00481, NAD-dependent deacetylase; Pro 2e-62
cd00296222 cd00296, SIR2, SIR2 superfamily of proteins includ 5e-62
pfam02146177 pfam02146, SIR2, Sir2 family 3e-60
COG0846250 COG0846, SIR2, NAD-dependent protein deacetylases, 1e-49
cd01413222 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryo 2e-45
cd01412224 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryoti 6e-42
cd01408235 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) w 1e-36
cd01411225 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic 1e-36
PRK14138244 PRK14138, PRK14138, NAD-dependent deacetylase; Pro 5e-36
cd01410206 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic 4e-35
PTZ00409271 PTZ00409, PTZ00409, Sir2 (Silent Information Regul 5e-28
PTZ00408242 PTZ00408, PTZ00408, NAD-dependent deacetylase; Pro 3e-26
PTZ00410 349 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisiona 1e-25
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information 
 Score =  318 bits (818), Expect = e-110
 Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 2/219 (0%)

Query: 31  LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYW 90
           L+ F+ +  ++LV+TGAGISTESGIPDYRSEG GLY+R+  RP+  Q+F++S   R RYW
Sbjct: 1   LQDFVARSRRLLVLTGAGISTESGIPDYRSEG-GLYSRT-FRPMTHQEFMRSPAARQRYW 58

Query: 91  ARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFR 150
           AR+FVGWPRFS+ QPNA H AL  +E   +L  +ITQNVDGLH KAG++ V+E+HG+  R
Sbjct: 59  ARSFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHR 118

Query: 151 VMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGD 210
           V+CL C +   R + Q  LE LNP    ++    PDGDV++ +E ++ F VP+C  C G 
Sbjct: 119 VVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECERCGGV 178

Query: 211 LKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
           LKPD+VFFG+N+PR R+      +   D +LVLGSSL V
Sbjct: 179 LKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMV 217

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 260
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family Back     alignment and domain information
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription] Back     alignment and domain information
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E Back     alignment and domain information
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 275
cd01409260 SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla 100.0
KOG2683|consensus305 100.0
PRK05333285 NAD-dependent deacetylase; Provisional 100.0
PRK14138244 NAD-dependent deacetylase; Provisional 100.0
PTZ00409271 Sir2 (Silent Information Regulator) protein; Provi 100.0
cd01413222 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group 100.0
COG0846250 SIR2 NAD-dependent protein deacetylases, SIR2 fami 100.0
PRK00481242 NAD-dependent deacetylase; Provisional 100.0
cd01411225 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo 100.0
cd01407218 SIR2-fam SIR2 family of proteins includes silent i 100.0
cd01408235 SIRT1 SIRT1: Eukaryotic group (class1) which inclu 100.0
cd01410206 SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla 100.0
cd01412224 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea 100.0
PTZ00408242 NAD-dependent deacetylase; Provisional 100.0
PTZ00410 349 NAD-dependent SIR2; Provisional 100.0
PF02146178 SIR2: Sir2 family; InterPro: IPR003000 These seque 100.0
cd00296222 SIR2 SIR2 superfamily of proteins includes silent 100.0
KOG2684|consensus412 100.0
KOG2682|consensus314 100.0
KOG1905|consensus353 100.0
cd01406242 SIR2-like Sir2-like: Prokaryotic group of uncharac 99.33
PF13289143 SIR2_2: SIR2-like domain 94.49
PF07295146 DUF1451: Protein of unknown function (DUF1451); In 92.91
PRK11032160 hypothetical protein; Provisional 92.56
smart0083441 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C 89.99
PF0972342 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134 89.59
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 89.38
PF00205137 TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr 85.91
PRK06260 397 threonine synthase; Validated 84.62
PRK06266178 transcription initiation factor E subunit alpha; V 83.33
TIGR0209838 MJ0042_CXXC MJ0042 family finger-like domain. This 83.24
PF0259156 DUF164: Putative zinc ribbon domain; InterPro: IPR 83.06
PF09845131 DUF2072: Zn-ribbon containing protein (DUF2072); I 83.01
TIGR003541095 polC DNA polymerase, archaeal type II, large subun 82.65
TIGR0260552 CxxC_CxxC_SSSS putative regulatory protein, FmdB f 82.28
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 81.92
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 81.28
COG3364112 Zn-ribbon containing protein [General function pre 80.87
PRK040231121 DNA polymerase II large subunit; Validated 80.23
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information 
Probab=100.00  E-value=6.8e-61  Score=425.31  Aligned_cols=241  Identities=49%  Similarity=0.876  Sum_probs=213.5

Q ss_pred             HHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHH
Q psy16867         31 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHY  110 (275)
Q Consensus        31 l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~  110 (275)
                      |+++|+++++|||+||||||++|||||||+.+ |+|.+. +.++++..|..+|+.+|.||.+.+..+..+.+++||.+|+
T Consensus         1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~-Glw~~~-~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~   78 (260)
T cd01409           1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEG-GLYSRT-FRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHR   78 (260)
T ss_pred             ChHHHhcCCCEEEEeCceeehhhCCCCCCCcC-CcccCC-CCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHH
Confidence            46789999999999999999999999999998 999984 3567889999999999999987776555567899999999


Q ss_pred             HHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcc
Q psy16867        111 ALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVE  190 (275)
Q Consensus       111 ~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~  190 (275)
                      +|++|++.|++.+||||||||||++||.++|+|+|||+.+++|+.|++.+.+..+...+...+|.|........|+++..
T Consensus        79 ~la~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (260)
T cd01409          79 ALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVD  158 (260)
T ss_pred             HHHHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccc
Confidence            99999999999999999999999999999999999999999999999999888888888888999987766677777776


Q ss_pred             cchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---Hhhh--ccCcEEEEec
Q psy16867        191 MSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---LVKE--HAKGYLGKGN  265 (275)
Q Consensus       191 ~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~~r~--~~~~~~v~iN  265 (275)
                      ++.+......+|+||.|||.|||+||||||.+|.+.++.+.+++.+||++||||||+.|++   ++++  ..++.+|.||
T Consensus       159 ~~~~~~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN  238 (260)
T cd01409         159 LEDEQVAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVN  238 (260)
T ss_pred             cchhhcccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEc
Confidence            6555555556899999999999999999999999999999999999999999999999974   2221  1379999999


Q ss_pred             CCCCCCCC
Q psy16867        266 VQTTPFSF  273 (275)
Q Consensus       266 ~~~~~~~~  273 (275)
                      +++|+++.
T Consensus       239 ~~~t~~d~  246 (260)
T cd01409         239 IGPTRADH  246 (260)
T ss_pred             CCCCCCCc
Confidence            99999985

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
>KOG2683|consensus Back     alignment and domain information
>PRK05333 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>PRK14138 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription] Back     alignment and domain information
>PRK00481 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E Back     alignment and domain information
>PTZ00408 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>PTZ00410 NAD-dependent SIR2; Provisional Back     alignment and domain information
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases Back     alignment and domain information
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>KOG2684|consensus Back     alignment and domain information
>KOG2682|consensus Back     alignment and domain information
>KOG1905|consensus Back     alignment and domain information
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PF13289 SIR2_2: SIR2-like domain Back     alignment and domain information
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length Back     alignment and domain information
>PRK11032 hypothetical protein; Provisional Back     alignment and domain information
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein Back     alignment and domain information
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain Back     alignment and domain information
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function Back     alignment and domain information
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function Back     alignment and domain information
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit Back     alignment and domain information
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>COG3364 Zn-ribbon containing protein [General function prediction only] Back     alignment and domain information
>PRK04023 DNA polymerase II large subunit; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
1yc5_A246 Sir2-P53 Peptide-Nicotinamide Length = 246 2e-24
1ma3_A253 Structure Of A Sir2 Enzyme Bound To An Acetylated P 4e-24
2h4h_A246 Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 5e-24
3rig_A273 Sirt5 Is An Nad-Dependent Protein Lysine Demalonyla 8e-24
4hda_A275 Crystal Structure Of Human Sirt5 In Complex With Fl 8e-24
2nyr_A271 Crystal Structure Of Human Sirtuin Homolog 5 In Com 9e-24
4g1c_A267 Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length 1e-23
2h59_A246 Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp 1e-23
2b4y_A271 Crystal Structure Of Human Sirtuin Homolog 5 Length 3e-23
3u31_A290 Plasmodium Falciparum Sir2a Preferentially Hydrolyz 1e-21
4fvt_A274 Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad L 2e-21
4hd8_A284 Crystal Structure Of Human Sirt3 In Complex With Fl 3e-21
3glr_A285 Crystal Structure Of Human Sirt3 With Acetyl-Lysine 3e-21
4i5i_A287 Crystal Structure Of The Sirt1 Catalytic Domain Bou 1e-20
1m2g_A249 Sir2 Homologue-Adp Ribose Complex Length = 249 2e-20
1ici_A256 Crystal Structure Of A Sir2 Homolog-Nad Complex Len 3e-20
1m2n_A249 Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acety 4e-20
3jwp_A265 Crystal Structure Of Plasmodium Falciparum Sir2a (P 5e-20
1m2h_A249 Sir2 Homologue S24a Mutant-adp Ribose Complex Lengt 5e-20
1m2j_A249 Sir2 Homologue H80n Mutant-Adp Ribose Complex Lengt 1e-19
1m2k_A249 Sir2 Homologue F159a Mutant-Adp Ribose Complex Leng 2e-19
1j8f_C323 Human Sirt2 Histone Deacetylase Length = 323 9e-18
1j8f_A323 Human Sirt2 Histone Deacetylase Length = 323 1e-17
1q17_A300 Structure Of The Yeast Hst2 Protein Deacetylase In 6e-17
1szc_A297 Structural Basis For Nicotinamide Cleavage And Adp- 7e-17
1q1a_A289 Structure Of The Yeast Hst2 Protein Deacetylase In 7e-17
2od7_A308 Crystal Structure Of Yhst2 Bound To The Intermediat 7e-17
1q14_A 361 Structure And Autoregulation Of The Yeast Hst2 Homo 1e-16
2od2_A308 Crystal Structure Of Yhst2 I117f Mutant Bound To Ca 2e-16
4iao_A492 Crystal Structure Of Sir2 C543s Mutant In Complex W 6e-16
2hjh_A354 Crystal Structure Of The Sir2 Deacetylase Length = 1e-15
3k35_A318 Crystal Structure Of Human Sirt6 Length = 318 3e-15
3pki_A 355 Human Sirt6 Crystal Structure In Complex With Adp R 4e-15
1s5p_A235 Structure And Substrate Binding Properties Of Cobb, 8e-14
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide Length = 246 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 39/250 (15%)
Query: 30  KLKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVR 86
           K+K+F++  N+    + +TGAGIST SGIPD+R    G+Y +  +      DF  S    
Sbjct: 2   KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDI-DFFYSHPEE 59
Query: 87  IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
              +A+  + +P   + +PN  H  L ++E+   +  +ITQN+D LH +AG+KKVIE+HG
Sbjct: 60  FYRFAKEGI-FPMLQA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
                 C+ C+    ++  + +++ L      ES +                  VP C  
Sbjct: 118 NVEEYYCVRCE---KKYTVEDVIKKL------ESSD------------------VPLCDD 150
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV-PI----LVKEHAKGYL 261
           C+  ++P+IVFFG+N+P+  + +   L      ++VLGSSL V P     L+   + G L
Sbjct: 151 CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKL 210
Query: 262 GKGNVQTTPF 271
              N+  TPF
Sbjct: 211 VIVNLGETPF 220
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53 Peptide Length = 253 Back     alignment and structure
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 Back     alignment and structure
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase Length = 273 Back     alignment and structure
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With Fluor-de-lys Peptide And Resveratrol Length = 275 Back     alignment and structure
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex With Suramin Length = 271 Back     alignment and structure
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length = 267 Back     alignment and structure
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose Length = 246 Back     alignment and structure
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 Length = 271 Back     alignment and structure
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium And Long Chain Fatty Acyl Lysine Length = 290 Back     alignment and structure
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad Length = 274 Back     alignment and structure
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With Fluor-de-lys Peptide And Piceatannol Length = 284 Back     alignment and structure
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 Peptide Length = 285 Back     alignment and structure
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To Nad And An Ex527 Analog Length = 287 Back     alignment and structure
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex Length = 256 Back     alignment and structure
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a (Pf13_0152) In Complex With Amp Length = 265 Back     alignment and structure
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase Length = 323 Back     alignment and structure
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase Length = 323 Back     alignment and structure
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 300 Back     alignment and structure
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose Transfer By Nad+-Dependent Sir2 HistonePROTEIN DEACETYLASES Length = 297 Back     alignment and structure
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 289 Back     alignment and structure
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate Analogue Adp-Hpd, And And Aceylated H4 Peptide Length = 308 Back     alignment and structure
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of Sir2 Length = 361 Back     alignment and structure
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To Carba-Nad+ And An Acetylated H4 Peptide Length = 308 Back     alignment and structure
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid Domain Of Sir4 Length = 492 Back     alignment and structure
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase Length = 354 Back     alignment and structure
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6 Length = 318 Back     alignment and structure
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose Length = 355 Back     alignment and structure
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2 Homolog Protein Deacetylase From Eschericia Coli Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
3riy_A273 NAD-dependent deacetylase sirtuin-5; desuccinylase 2e-92
1yc5_A246 NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, 6e-87
3u31_A290 SIR2A, transcriptional regulatory protein SIR2 hom 5e-84
2hjh_A354 NAD-dependent histone deacetylase SIR2; protein, s 6e-79
1ma3_A253 SIR2-AF2, transcriptional regulatory protein, SIR2 8e-78
3k35_A318 NAD-dependent deacetylase sirtuin-6; rossmann fold 2e-75
3pki_A 355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 6e-74
1m2k_A249 Silent information regulator 2; protein-ligand com 3e-69
3glr_A285 NAD-dependent deacetylase sirtuin-3, mitochondria; 1e-62
1j8f_A323 SIRT2, sirtuin 2, isoform 1, silencing INFO; gene 1e-60
1q1a_A289 HST2 protein; ternary complex, histone deacetylase 6e-60
1s5p_A235 NAD-dependent deacetylase; protein deacetylase, SI 2e-59
1q14_A361 HST2 protein; histone deacetylase, hydrolase; 2.50 7e-55
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A* Length = 273 Back     alignment and structure
 Score =  273 bits (700), Expect = 2e-92
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 19/230 (8%)

Query: 26  SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV 85
           S +   ++F  K   I++++GAG+S ESG+P +R  G G + +           L     
Sbjct: 9   SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAG-GYWRKWQ--AQDLATPLAFAHN 65

Query: 86  RIRYWARNFVGWPRFSSFQPNANHYALKQMEDNE----KLSYIITQNVDGLHYKAGNKKV 141
             R W           S +PNA H A+ + E       +   +ITQN+D LH KAG K +
Sbjct: 66  PSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNL 125

Query: 142 IEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHV 201
           +E+HG+ F+  C  C    + +K        +P     S +  P+   +  + +I    +
Sbjct: 126 LEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQ--DASIPVEKL 175

Query: 202 PQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
           P+C    C G L+P +V+FG+N+    +E++D  +  CD  LV+G+S  V
Sbjct: 176 PRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVV 225
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 Back     alignment and structure
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Length = 290 Back     alignment and structure
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Length = 354 Back     alignment and structure
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 Back     alignment and structure
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 Back     alignment and structure
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355 Back     alignment and structure
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249 Back     alignment and structure
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Length = 285 Back     alignment and structure
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Length = 323 Back     alignment and structure
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Length = 289 Back     alignment and structure
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Length = 235 Back     alignment and structure
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Length = 361 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
1yc5_A246 NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, 100.0
1ma3_A253 SIR2-AF2, transcriptional regulatory protein, SIR2 100.0
3riy_A273 NAD-dependent deacetylase sirtuin-5; desuccinylase 100.0
3u31_A290 SIR2A, transcriptional regulatory protein SIR2 hom 100.0
1m2k_A249 Silent information regulator 2; protein-ligand com 100.0
1q1a_A289 HST2 protein; ternary complex, histone deacetylase 100.0
3glr_A285 NAD-dependent deacetylase sirtuin-3, mitochondria; 100.0
1j8f_A323 SIRT2, sirtuin 2, isoform 1, silencing INFO; gene 100.0
1q14_A361 HST2 protein; histone deacetylase, hydrolase; 2.50 100.0
1s5p_A235 NAD-dependent deacetylase; protein deacetylase, SI 100.0
2hjh_A354 NAD-dependent histone deacetylase SIR2; protein, s 100.0
4iao_A492 NAD-dependent histone deacetylase SIR2; protein co 100.0
3k35_A318 NAD-dependent deacetylase sirtuin-6; rossmann fold 100.0
3pki_A 355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 100.0
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 85.32
2k5c_A95 Uncharacterized protein PF0385; structural genomic 81.58
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 80.55
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Back     alignment and structure
Probab=100.00  E-value=8.1e-58  Score=402.19  Aligned_cols=214  Identities=32%  Similarity=0.549  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCH
Q psy16867         28 INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNA  107 (275)
Q Consensus        28 l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~  107 (275)
                      +++++++|++|++|||+||||||++|||||||+.+ |+|+++..+.++...|..+|+.+|+||.+.+.   .+.+++||.
T Consensus         3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~-Glw~~~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~   78 (246)
T 1yc5_A            3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNL   78 (246)
T ss_dssp             CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCH
T ss_pred             HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCC-cccccCCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCH
Confidence            67899999999999999999999999999999998 99998644456778899999999999987753   446899999


Q ss_pred             HHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCC
Q psy16867        108 NHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDG  187 (275)
Q Consensus       108 ~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  187 (275)
                      +|++|++|++.|++++|||||||+||++||.++|+|+||++...+|+.|++.+..+++.+.                   
T Consensus        79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~-------------------  139 (246)
T 1yc5_A           79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKK-------------------  139 (246)
T ss_dssp             HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHH-------------------
T ss_pred             HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHH-------------------
Confidence            9999999999999999999999999999999999999999999999999998765443211                   


Q ss_pred             CcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---H---hhhccCcEE
Q psy16867        188 DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---L---VKEHAKGYL  261 (275)
Q Consensus       188 d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~---~r~~~~~~~  261 (275)
                              +....+|+||.|||.|||+||||||.+|++.++++.+++++||++||||||+.|.+   +   ++. .++.+
T Consensus       140 --------~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~-~g~~~  210 (246)
T 1yc5_A          140 --------LESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR-SGGKL  210 (246)
T ss_dssp             --------TTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHH-HTCEE
T ss_pred             --------hccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHH-cCCeE
Confidence                    11124899999999999999999999999999999999999999999999999953   2   232 27899


Q ss_pred             EEecCCCCCCCC
Q psy16867        262 GKGNVQTTPFSF  273 (275)
Q Consensus       262 v~iN~~~~~~~~  273 (275)
                      |.||+++++++.
T Consensus       211 i~IN~~~~~~d~  222 (246)
T 1yc5_A          211 VIVNLGETPFDD  222 (246)
T ss_dssp             EEECSSCCTTGG
T ss_pred             EEEeCCCCCCCc
Confidence            999999999864
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Back     alignment and structure
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* Back     alignment and structure
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Back     alignment and structure
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Back     alignment and structure
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Back     alignment and structure
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* Back     alignment and structure
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Back     alignment and structure
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Back     alignment and structure
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Back     alignment and structure
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Back     alignment and structure
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Back     alignment and structure
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 275
d2b4ya1267 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirt 2e-56
d1j8fa_323 c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Ho 2e-46
d1ma3a_252 c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Arc 4e-42
d1s5pa_235 c.31.1.5 (A:) NAD-dependent deacetylase CobB {Esch 7e-42
d1m2ka_249 c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Ar 4e-40
d1yc5a1245 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA 4e-39
d1q1aa_289 c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces c 1e-37
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 267 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase sirtuin-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  180 bits (456), Expect = 2e-56
 Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 15/229 (6%)

Query: 26  SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV 85
           S +   ++F  K   I++++GAG+S ESG+P +R  G G + +           L     
Sbjct: 3   SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAG-GYWRKWQ--AQDLATPLAFAHN 59

Query: 86  RIRYWARNFVGWPRFSSFQPNANHYALKQME----DNEKLSYIITQNVDGLHYKAGNKKV 141
             R W           S +PNA H A+ + E       +   +ITQN+D LH KAG K +
Sbjct: 60  PSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNL 119

Query: 142 IEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHV 201
           +E+HG+ F+  C  C    + +K        +P     S +  P+   + +   + K   
Sbjct: 120 LEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDASIPVEKLPR 171

Query: 202 PQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250
            +   C G L+P +V+FG+N+    +E++D  +  CD  LV+G+S  V 
Sbjct: 172 CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVY 220
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 252 Back     information, alignment and structure
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 249 Back     information, alignment and structure
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Length = 245 Back     information, alignment and structure
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 289 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
d1yc5a1245 NAD-dependent deacetylase NpdA {Thermotoga maritim 100.0
d1m2ka_249 AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo 100.0
d2b4ya1267 NAD-dependent deacetylase sirtuin-5 {Human (Homo s 100.0
d1ma3a_252 AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog 100.0
d1j8fa_323 Sirt2 histone deacetylase {Human (Homo sapiens) [T 100.0
d1s5pa_235 NAD-dependent deacetylase CobB {Escherichia coli [ 100.0
d1q1aa_289 Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d2ihta1177 Carboxyethylarginine synthase {Streptomyces clavul 92.27
d2djia1177 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 90.73
d2ji7a1175 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 90.15
d1ybha1179 Acetohydroxyacid synthase catalytic subunit {Thale 89.24
d2ez9a1183 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 88.56
d2ez9a1183 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 88.11
d1ybha1179 Acetohydroxyacid synthase catalytic subunit {Thale 87.13
d1ozha1179 Catabolic acetolactate synthase {Klebsiella pneumo 86.22
d1s24a_56 Two-iron rubredoxin {Pseudomonas oleovorans [TaxId 85.35
d1ovma1161 Indole-3-pyruvate decarboxylase {Enterobacter cloa 83.34
d2djia1177 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 82.77
d1ozha1179 Catabolic acetolactate synthase {Klebsiella pneumo 80.8
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.3e-58  Score=401.83  Aligned_cols=217  Identities=31%  Similarity=0.534  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCC
Q psy16867         27 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPN  106 (275)
Q Consensus        27 ~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~  106 (275)
                      +|++|+++|++|++|||+||||||++|||||||+++ |+|+++.....+...|..+|+.+|.||...+   ..+.+++||
T Consensus         2 k~~~l~~~l~~~~~ivvltGAGiS~~SGIPdfR~~~-G~w~~~~~~~~~~~~f~~~p~~~~~~~~~~~---~~~~~~~P~   77 (245)
T d1yc5a1           2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDIDFFYSHPEEFYRFAKEGI---FPMLQAKPN   77 (245)
T ss_dssp             CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHT---GGGGGCCCC
T ss_pred             cHHHHHHHHHhCCCEEEEECchhccccCCCCccCcC-CCccCCCcccccHHHHHhhhHHHHHHHHhhh---hhhhhhhhh
Confidence            478999999999999999999999999999999998 9999877666788899999999998887655   345689999


Q ss_pred             HHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCC
Q psy16867        107 ANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD  186 (275)
Q Consensus       107 ~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  186 (275)
                      .+|++|++|++.+++.+||||||||||++||.++|+|+||+++..+|..|++.+..+++...                  
T Consensus        78 ~~H~~L~~l~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~c~~~~~~~~~~~~------------------  139 (245)
T d1yc5a1          78 LAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKK------------------  139 (245)
T ss_dssp             HHHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHH------------------
T ss_pred             hhhHHHHHHHhcCCCceEeecccchHHHHcCCccccccccccceeeecccCCCccHHHHhhh------------------
Confidence            99999999999999999999999999999999999999999999999999999876654322                  


Q ss_pred             CCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHHhh-----hccCcEE
Q psy16867        187 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVK-----EHAKGYL  261 (275)
Q Consensus       187 ~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~r-----~~~~~~~  261 (275)
                               ......|.|+.|||.|||+||||||.+|++.++++.++++++|++||||||+.|++..+     ...++.+
T Consensus       140 ---------~~~~~~p~c~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~  210 (245)
T d1yc5a1         140 ---------LESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKL  210 (245)
T ss_dssp             ---------TTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEE
T ss_pred             ---------hhcccCCCccccCCcccCcEEEccccCCHHHHHHHHHHhhcCCEEEEECCCeEEechhhhhHHHHHcCCeE
Confidence                     12234899999999999999999999999999999999999999999999999985322     1226899


Q ss_pred             EEecCCCCCCCCC
Q psy16867        262 GKGNVQTTPFSFL  274 (275)
Q Consensus       262 v~iN~~~~~~~~~  274 (275)
                      |.||++++++|..
T Consensus       211 i~IN~~~t~~d~~  223 (245)
T d1yc5a1         211 VIVNLGETPFDDI  223 (245)
T ss_dssp             EEECSSCCTTGGG
T ss_pred             EEECCCCCCCCcc
Confidence            9999999998763
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]} Back     information, alignment and structure
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure