Psyllid ID: psy16887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREKPGNSHGICHPVKLNNMFSN
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccccccEEEEcccHHHHHHHHHHHccccccccccccccccccccEEEEHHHHHHHHHHHHHHcccccccccccHHHHcccccEEEEEcccccccHHcccccccccHHHHHHHHHHcccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccEEEEEccccccccEEEEccHHHHHHHHHHHHcccccccccccccccccccccEEEEEHHHHHHHHHccccEEEEccccccHHHHHccEEEEEEccccccHHHHHHHHHccHHHHHHHHHHHHHHccccEEEEEEEccccccc
Coil and Loop (DISEMBL)
dhwddvvfgdsiskfpayervslrhpgfirpvvlfgpvadLARDKllkdfpdkfsaphprrrnqekfrwsSFFNSLTKVSATCLTSYGFYVDLLfgsnrsddldsnprvytrpwkngkpgksmdlkirPKVMENVKTlrekpgnshgichpvklnnmfsn
Flexible Loop (DISEMBL)
dhwddvvfgdsiskfpayervslrhpGFIRPVVLFGPVADLARDKLLkdfpdkfsaphprrrnqekfrwSSFFNSLTKVSATCLTSYGFYVDLLFGsnrsddldsnprvytrpwkngkpgksmdlkirPKVMENVKTlrekpgnshgichpvklnnmfsn
Low Complexity Region (SEG)
DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREKPGNSHGICHPVKLNNMFSN
Disordered region (IsUnstruct)
**WDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDF***************KFRWSSFFNSLTKVSATCLTSYGFYVDLLFGS***************************************************************
Disordered Region (DISOPRED)
*HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFP**********************NSLTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGK*************************NSHGICHPVKLN*****
Disordered Region (DISEMBL)
DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREKPGNSHGICHPVKLNNMFSN
Disordered Region (DISPRO)
*HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP**********RWSSFFNSLTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREKPGNSHGICHPVKLNN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREKPGNSHGICHPVKLNNMFSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q95168	1174	Tight junction protein ZO	yes	N/A	0.475	0.064	0.443	2e-10
O97758	1769	Tight junction protein ZO	no	N/A	0.262	0.023	0.619	4e-10
Q07157	1748	Tight junction protein ZO	no	N/A	0.262	0.024	0.619	4e-10
P39447	1745	Tight junction protein ZO	no	N/A	0.262	0.024	0.619	4e-10
Q9UDY2	1190	Tight junction protein ZO	no	N/A	0.418	0.056	0.463	5e-10
Q9Z0U1	1167	Tight junction protein ZO	no	N/A	0.337	0.046	0.517	5e-09
O95049	933	Tight junction protein ZO	no	N/A	0.256	0.043	0.560	5e-07
O62683	898	Tight junction protein ZO	no	N/A	0.25	0.044	0.575	6e-07
Q9QXY1	905	Tight junction protein ZO	no	N/A	0.3	0.053	0.479	2e-06
P78352	724	Disks large homolog 4 OS=	no	N/A	0.512	0.113	0.329	5e-05

>sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 OS=Canis familiaris GN=TJP2 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 4   DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
           +D+    S+S KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F      P+
Sbjct: 688 EDLTAAVSVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANELPDLFQTAKTEPK 747

Query: 61  RRNQEKFRWSSFFNSLTKV 79
               EK       N++ ++
Sbjct: 748 DAGSEKSSGVVRLNTVRQI 766

Plays a role in tight junctions and adherens junctions.
Canis familiaris (taxid: 9615)

>sp|O97758|ZO1_CANFA Tight junction protein ZO-1 OS=Canis familiaris GN=TJP1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 54
           +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +
Sbjct: 627 TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIY 668

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.

Canis familiaris (taxid: 9615)

>sp|Q07157|ZO1_HUMAN Tight junction protein ZO-1 OS=Homo sapiens GN=TJP1 PE=1 SV=3

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 54
           +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +
Sbjct: 628 TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIY 669

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.

Homo sapiens (taxid: 9606)

>sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 OS=Mus musculus GN=Tjp1 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 54
           +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +
Sbjct: 628 TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIY 669

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.

Mus musculus (taxid: 10090)

>sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 OS=Homo sapiens GN=TJP2 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPRRRNQEKFRWS 70
           +KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F      P+    EK    
Sbjct: 714 TKFPAYERVLLREAGFKRPVVLFGPIADIAMEKLANELPDWFQTAKTEPKDAGSEKSTGV 773

Query: 71  SFFNSLTKV 79
              N++ ++
Sbjct: 774 VRLNTVRQI 782

Plays a role in tight junctions and adherens junctions.

Homo sapiens (taxid: 9606)

>sp|Q9Z0U1|ZO2_MOUSE Tight junction protein ZO-2 OS=Mus musculus GN=Tjp2 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF--SAPHPRRRNQEK 66
           +KFPAYE+V LR  GF RPVVLFGP+AD+A ++L  + PD F  +   P+    EK
Sbjct: 696 TKFPAYEKVLLREAGFKRPVVLFGPIADIAMERLATELPDLFQTAKTEPKDAGSEK 751

Plays a role in tight junctions and adherens junctions.

Mus musculus (taxid: 10090)

>sp|O95049|ZO3_HUMAN Tight junction protein ZO-3 OS=Homo sapiens GN=TJP3 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 14  KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 54
           ++P YERV LR   F RPVV+ GPVAD+A  KL  + PD+F
Sbjct: 617 RYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQF 657

Homo sapiens (taxid: 9606)

>sp|O62683|ZO3_CANFA Tight junction protein ZO-3 OS=Canis familiaris GN=TJP3 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 28/40 (70%)

Query: 15  FPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 54
           +P YERV LR   F RPVV+ GPVAD+A  KL  + PD+F
Sbjct: 593 YPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQF 632

Canis familiaris (taxid: 9615)

>sp|Q9QXY1|ZO3_MOUSE Tight junction protein ZO-3 OS=Mus musculus GN=Tjp3 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 29/48 (60%)

Query: 15  FPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRR 62
           +P YERV LR   F RPVV+ GPVAD+A  KL  + P++F       R
Sbjct: 597 YPPYERVVLREASFKRPVVILGPVADIAMKKLTTEMPEEFEIAESMSR 644

Mus musculus (taxid: 10090)

>sp|P78352|DLG4_HUMAN Disks large homolog 4 OS=Homo sapiens GN=DLG4 PE=1 SV=3

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 17  AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSA--PH---PRRRNQEKFRWSS 71
           +YE V+     + RP+++ GP  D A D LL +FPDKF +  PH   P+R  +   R   
Sbjct: 522 SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 581

Query: 72  FFNSLTK----VSATCLTSYGFYVDLLFGSN 98
           F +S  K    + A      G Y   L+G++
Sbjct: 582 FVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 612

Interacts with the cytoplasmic tail of NMDA receptor subunits and shaker-type potassium channels. Required for synaptic plasticity associated with NMDA receptor signaling. Overexpression or depletion of DLG4 changes the ratio of excitatory to inhibitory synapses in hippocampal neurons. May reduce the amplitude of ASIC3 acid-evoked currents by retaining the channel intracellularly. May regulate the intracellular trafficking of ADR1B.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
345479005	1559	PREDICTED: tight junction protein ZO-1-l	0.406	0.041	0.8	2e-24
307171573	1227	Tight junction protein ZO-1 [Camponotus	0.506	0.066	0.654	3e-24
332030048	1292	Tight junction protein ZO-1 [Acromyrmex	0.506	0.062	0.641	6e-24
328793836	1180	PREDICTED: tight junction protein ZO-1 [	0.362	0.049	0.862	7e-24
350409418	1181	PREDICTED: tight junction protein ZO-1-l	0.506	0.068	0.641	7e-24
340713561	1181	PREDICTED: tight junction protein ZO-1-l	0.506	0.068	0.641	7e-24
307213715	1250	Tight junction protein ZO-1 [Harpegnatho	0.506	0.064	0.641	7e-24
383859496	1184	PREDICTED: tight junction protein ZO-1-l	0.362	0.048	0.862	8e-24
322784679	234	hypothetical protein SINV_10211 [Solenop	0.506	0.346	0.641	1e-23
242014650	1337	tight junction protein tama, putative [P	0.362	0.043	0.879	1e-23

>gi|345479005|ref|XP_001607015.2| PREDICTED: tight junction protein ZO-1-like [Nasonia vitripennis]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/65 (80%), Positives = 58/65 (89%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
           DHWDDVVF DS+SKFPAYERV LRHPGFIRPVVLFGPVADLAR+KLLKDFPDKF++P   
Sbjct: 751 DHWDDVVFSDSVSKFPAYERVVLRHPGFIRPVVLFGPVADLAREKLLKDFPDKFTSPQTE 810

Query: 61  RRNQE 65
            + +E
Sbjct: 811 SQIEE 815

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171573|gb|EFN63382.1| Tight junction protein ZO-1 [Camponotus floridanus]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 66/81 (81%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
           DHWDDVVF DS+SKFPAYERV LRHPGFIRPVVLFGPVADLAR+KLLKDFPDKF++P   
Sbjct: 564 DHWDDVVFSDSVSKFPAYERVILRHPGFIRPVVLFGPVADLAREKLLKDFPDKFTSPQME 623

Query: 61  RRNQEKFRWSSFFNSLTKVSA 81
            + ++    ++  + + ++SA
Sbjct: 624 SQMEDGTGKNTKTSGIIRLSA 644

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030048|gb|EGI69873.1| Tight junction protein ZO-1 [Acromyrmex echinatior]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 66/81 (81%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
           DHWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P   
Sbjct: 560 DHWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQME 619

Query: 61  RRNQEKFRWSSFFNSLTKVSA 81
            + ++    ++  + + ++SA
Sbjct: 620 SQMEDGTGKNTKTSGIIRLSA 640

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793836|ref|XP_001120987.2| PREDICTED: tight junction protein ZO-1 [Apis mellifera]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 55/58 (94%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPH 58
           DHWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P 
Sbjct: 526 DHWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQ 583

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409418|ref|XP_003488729.1| PREDICTED: tight junction protein ZO-1-like [Bombus impatiens]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 65/81 (80%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
           DHWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P   
Sbjct: 526 DHWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQME 585

Query: 61  RRNQEKFRWSSFFNSLTKVSA 81
            +  +    ++  + + ++SA
Sbjct: 586 NQLDDNIGKNTKSSGIIRLSA 606

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713561|ref|XP_003395310.1| PREDICTED: tight junction protein ZO-1-like [Bombus terrestris]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 65/81 (80%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
           DHWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P   
Sbjct: 526 DHWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQME 585

Query: 61  RRNQEKFRWSSFFNSLTKVSA 81
            +  +    ++  + + ++SA
Sbjct: 586 NQLDDNIGKNTKSSGIIRLSA 606

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213715|gb|EFN89064.1| Tight junction protein ZO-1 [Harpegnathos saltator]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 66/81 (81%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
           DHWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P   
Sbjct: 553 DHWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQME 612

Query: 61  RRNQEKFRWSSFFNSLTKVSA 81
            + ++    ++  + + ++SA
Sbjct: 613 SQMEDGSGKNTKTSGIIRLSA 633

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859496|ref|XP_003705230.1| PREDICTED: tight junction protein ZO-1-like [Megachile rotundata]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 55/58 (94%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPH 58
           DHWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P 
Sbjct: 526 DHWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQ 583

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784679|gb|EFZ11533.1| hypothetical protein SINV_10211 [Solenopsis invicta]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 66/81 (81%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
           DHWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P   
Sbjct: 102 DHWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQME 161

Query: 61  RRNQEKFRWSSFFNSLTKVSA 81
            + ++    ++  + + ++SA
Sbjct: 162 SQMEDGTGKNTKTSGIIRLSA 182

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014650|ref|XP_002427998.1| tight junction protein tama, putative [Pediculus humanus corporis] gi|212512517|gb|EEB15260.1| tight junction protein tama, putative [Pediculus humanus corporis]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 55/58 (94%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPH 58
           DHWDDVVF DSISKFPAYERV LRHPGFIRPVVLFGPVAD+ARDK+LKDFPDKF++P 
Sbjct: 531 DHWDDVVFSDSISKFPAYERVFLRHPGFIRPVVLFGPVADIARDKILKDFPDKFTSPQ 588

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
FB|FBgn0262614	2090	pyd "polychaetoid" [Drosophila	0.356	0.027	0.824	4.1e-22
UNIPROTKB|J9P013	1138	TJP2 "Tight junction protein Z	0.393	0.055	0.515	3.8e-12
UNIPROTKB|J9P749	1174	TJP2 "Tight junction protein Z	0.393	0.053	0.515	4.1e-12
UNIPROTKB|Q95168	1174	TJP2 "Tight junction protein Z	0.393	0.053	0.515	4.1e-12
UNIPROTKB|F1MTP9	821	TJP2 "Uncharacterized protein"	0.393	0.076	0.530	4.3e-12
UNIPROTKB|F1PEE3	1197	TJP2 "Tight junction protein Z	0.393	0.052	0.515	4.3e-12
UNIPROTKB|F1SJE2	1120	TJP2 "Uncharacterized protein"	0.393	0.056	0.545	7.4e-12
UNIPROTKB|F1MBN2	1206	TJP2 "Uncharacterized protein"	0.393	0.052	0.530	8.8e-12
UNIPROTKB|E9PTS1	1163	Tjp2 "Protein Tjp2" [Rattus no	0.393	0.054	0.484	7.1e-11
RGD|619807	1164	Tjp2 "tight junction protein 2	0.393	0.054	0.484	7.1e-11

FB|FBgn0262614 pyd "polychaetoid" [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
 Identities = 47/57 (82%), Positives = 53/57 (92%)

Query:     1 DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP 57
             ++WDDVVF DSISKFPAYERV LRHPGF+RPVVLFGPV+DLAR++L KDFPDKFS P
Sbjct:   603 ENWDDVVFSDSISKFPAYERVVLRHPGFVRPVVLFGPVSDLARERLAKDFPDKFSTP 659

GO:0004385 "guanylate kinase activity" evidence=ISS;NAS

GO:0007254 "JNK cascade" evidence=NAS

GO:0005912 "adherens junction" evidence=IDA;NAS;TAS

GO:0007391 "dorsal closure" evidence=NAS;TAS

GO:0046328 "regulation of JNK cascade" evidence=NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0035156 "fusion cell fate specification" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IGI;IMP

GO:0030424 "axon" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0005917 "nephrocyte diaphragm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0036059 "nephrocyte diaphragm assembly" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|J9P013 TJP2 "Tight junction protein ZO-2" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
 Identities = 34/66 (51%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    S+S KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F      P+
Sbjct:   688 EDLTAAVSVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANELPDLFQTAKTEPK 747

Query:    61 RRNQEK 66
                 EK
Sbjct:   748 DAGSEK 753

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|J9P749 TJP2 "Tight junction protein ZO-2" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 34/66 (51%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    S+S KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F      P+
Sbjct:   688 EDLTAAVSVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANELPDLFQTAKTEPK 747

Query:    61 RRNQEK 66
                 EK
Sbjct:   748 DAGSEK 753

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|Q95168 TJP2 "Tight junction protein ZO-2" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 34/66 (51%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    S+S KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F      P+
Sbjct:   688 EDLTAAVSVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANELPDLFQTAKTEPK 747

Query:    61 RRNQEK 66
                 EK
Sbjct:   748 DAGSEK 753

GO:0009986 "cell surface" evidence=IDA

GO:0005923 "tight junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MTP9 TJP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 35/66 (53%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    ++S KFPAYERV LR  GF RPVVLFGP+AD+A +KL  D PD F      PR
Sbjct:   482 EDLTAAVTVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANDLPDLFQTAKTEPR 541

Query:    61 RRNQEK 66
                 EK
Sbjct:   542 DAGSEK 547

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1PEE3 TJP2 "Tight junction protein ZO-2" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 34/66 (51%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    S+S KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F      P+
Sbjct:   711 EDLTAAVSVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANELPDLFQTAKTEPK 770

Query:    61 RRNQEK 66
                 EK
Sbjct:   771 DAGSEK 776

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1SJE2 TJP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 36/66 (54%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    SIS KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F      PR
Sbjct:   671 EDLTAVVSISTKFPAYERVLLREAGFKRPVVLFGPIADIAMEKLANELPDLFQTAKTEPR 730

Query:    61 RRNQEK 66
                 EK
Sbjct:   731 DAGSEK 736

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1MBN2 TJP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
 Identities = 35/66 (53%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    ++S KFPAYERV LR  GF RPVVLFGP+AD+A +KL  D PD F      PR
Sbjct:   720 EDLTAAVTVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANDLPDLFQTAKTEPR 779

Query:    61 RRNQEK 66
                 EK
Sbjct:   780 DAGSEK 785

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|E9PTS1 Tjp2 "Protein Tjp2" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
 Identities = 32/66 (48%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    S+S KFPAYE+V LR  GF RPVVLFGP+AD+A ++L  + PD F      P+
Sbjct:   684 EDLAAAVSVSTKFPAYEKVLLREAGFKRPVVLFGPIADIAMERLTTELPDLFQTAKTEPK 743

Query:    61 RRNQEK 66
                 EK
Sbjct:   744 DAGSEK 749

GO:0005923 "tight junction" evidence=IEA

RGD|619807 Tjp2 "tight junction protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
 Identities = 32/66 (48%), Positives = 42/66 (63%)

Query:     4 DDVVFGDSIS-KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--HPR 60
             +D+    S+S KFPAYE+V LR  GF RPVVLFGP+AD+A ++L  + PD F      P+
Sbjct:   684 EDLAAAVSVSTKFPAYEKVLLREAGFKRPVVLFGPIADIAMERLTTELPDLFQTAKTEPK 743

Query:    61 RRNQEK 66
                 EK
Sbjct:   744 DAGSEK 749

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005923 "tight junction" evidence=ISO;IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0010033 "response to organic substance" evidence=IEP

GO:0030054 "cell junction" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG0609|consensus	542		99.94
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.91
KOG0708|consensus	359		99.89
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.89
PRK14737	186	gmk guanylate kinase; Provisional	99.88
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.88
KOG3580|consensus	1027		99.87
PLN02772	398	guanylate kinase	99.86
KOG0707|consensus	231		99.79
PRK14738	206	gmk guanylate kinase; Provisional	99.59
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.39
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.16
PRK00300	205	gmk guanylate kinase; Provisional	98.96
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.1
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.82
PRK08356	195	hypothetical protein; Provisional	97.81
COG3709	192	Uncharacterized component of phosphonate metabolis	96.37
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	95.03
KOG3812|consensus	475		87.21
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	85.86

>KOG0609|consensus

Probab=99.94  E-value=4.7e-28  Score=217.90  Aligned_cols=146  Identities=22%  Similarity=0.250  Sum_probs=118.5

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccCh---HHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh---
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVA---DLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA---   81 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk---~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~---   81 (160)
                      ..+++||+|++.++...|+|||+||.+   ..|+++|+..+|++|+.+  |   |+|++|.+|++|||| |+++|++   
T Consensus       324 ~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FV-Sk~~~e~dI~  402 (542)
T KOG0609|consen  324 PELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFV-SKEEMEADIR  402 (542)
T ss_pred             cccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceee-ehHHHhhhhh
Confidence            457899999999998889999999995   689999999999999998  4   678999999999999 9999999   


Q ss_pred             -cccceeeeccceeeccccc-----------ccccCCC-------------eEEEecCCCCCCcccccccc-------Cc
Q psy16887         82 -TCLTSYGFYVDLLFGSNRS-----------DDLDSNP-------------RVYTRPWKNGKPGKSMDLKI-------RP  129 (160)
Q Consensus        82 -~~fiE~~~y~~~lygts~~-----------avldi~~-------------ivvfi~pks~k~iK~~~~~l-------~p  129 (160)
                       +.|||||+|.+|+|||++.           |+||+.|             +|||+.|++-..++.++..-       .+
T Consensus       403 ~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~  482 (542)
T KOG0609|consen  403 AGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQ  482 (542)
T ss_pred             cCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhcccccccccc
Confidence             4499999999999999964           4667654             89999999855554443321       23


Q ss_pred             cchHHHHHHHhC--------CCCCcceecccccccccC
Q psy16887        130 KVMENVKTLREK--------PGNSHGICHPVKLNNMFS  159 (160)
Q Consensus       130 ~s~e~~k~l~er--------~~~~~~~~~~v~l~~~~~  159 (160)
                      ...+.+++|.+.        ..|+|+++.|.||+.+|.
T Consensus       483 ~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~  520 (542)
T KOG0609|consen  483 FTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFR  520 (542)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHH
Confidence            455666666554        667777777899999874

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.91  E-value=1.1e-25  Score=176.88  Aligned_cols=126  Identities=24%  Similarity=0.327  Sum_probs=94.3

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      .|||||+||+   |++|.++|++++|++|+.+  |   |||+||.+|++|||| |+++|++    +.||||++|.|++||
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fv-s~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFV-SKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE---HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEE-eechhhhhhccccEEEEeeecchhhh
Confidence            6999999999   8999999999999999887  4   678899999999999 9999998    459999999999999


Q ss_pred             cccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC--------CCC
Q psy16887         97 SNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK--------PGN  144 (160)
Q Consensus        97 ts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er--------~~~  144 (160)
                      |++.           ++++++             |++||+.|+|.+.   ++.+++.++.++.+++.+|        ..+
T Consensus        81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~---l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~  157 (183)
T PF00625_consen   81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEV---LKRRLRRRGDESEEEIEERLERAEKEFEHY  157 (183)
T ss_dssp             EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHH---HHHHHHTTTHCHHHHHHHHHHHHHHHHGGG
T ss_pred             hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHH---HHHHHhccccccHHHHHHHHHHHHHHHhHh
Confidence            9854           455544             3899998887444   4445444444444444443        333


Q ss_pred             --Ccceeccccccccc
Q psy16887        145 --SHGICHPVKLNNMF  158 (160)
Q Consensus       145 --~~~~~~~v~l~~~~  158 (160)
                        .+.+..+.+|+.|+
T Consensus       158 ~~fd~vi~n~~le~~~  173 (183)
T PF00625_consen  158 NEFDYVIVNDDLEEAV  173 (183)
T ss_dssp             GGSSEEEECSSHHHHH
T ss_pred             hcCCEEEECcCHHHHH
Confidence              66667777888765

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>KOG0708|consensus

Probab=99.89  E-value=6e-24  Score=184.82  Aligned_cols=126  Identities=26%  Similarity=0.324  Sum_probs=110.4

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCccccc--CCcccccCCceeeEEecHHHHhh----cccce
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPH--PRRRNQEKFRWSSFFNSLTKVSA----TCLTS   86 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~--~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE   86 (160)
                      ...++||.|.++.+...|||+|+||.++.|+++|+.++|++|+.|.  +.+            .++++|++    +.|||
T Consensus       171 ~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~kF~~C~~~t~~------------~~~~eme~~~k~~~fI~  238 (359)
T KOG0708|consen  171 LSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDKFKSCLPETLR------------PSREEMERDSKEETFID  238 (359)
T ss_pred             cccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhccccccchhhhc------------ccHHHhhhhcccCceee
Confidence            4567999999999999999999999999999999999999999994  444            46999999    33999


Q ss_pred             eeeccceeeccc-----------ccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC-
Q psy16887         87 YGFYVDLLFGSN-----------RSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-  141 (160)
Q Consensus        87 ~~~y~~~lygts-----------~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-  141 (160)
                      +|+|++++|||+           +||+||+             .||||||+|+|++++|+++   ...+.+++|+|+++ 
T Consensus       239 ~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~---~~~t~~~ake~~e~a  315 (359)
T KOG0708|consen  239 AGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERN---LKITGEQAKELLERA  315 (359)
T ss_pred             ecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHh---cccchHHHHHHHHHH
Confidence            999999999998           5788875             4599999999999999999   33456788888887 


Q ss_pred             ----CCCCcceecccc
Q psy16887        142 ----PGNSHGICHPVK  153 (160)
Q Consensus       142 ----~~~~~~~~~~v~  153 (160)
                          +++..+||.+|+
T Consensus       316 ~klEqe~~~~~t~vv~  331 (359)
T KOG0708|consen  316 RKLEQELDRYFTLVVQ  331 (359)
T ss_pred             HHhHhhhhhceEEEEe
Confidence                899999999886

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.89  E-value=5.3e-24  Score=171.67  Aligned_cols=126  Identities=13%  Similarity=0.102  Sum_probs=101.8

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCccccc---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPH---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN   98 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts   98 (160)
                      ...+||+|||   |+||.++|++++.-.|+.|+   +||+||++|+||||+ |+++|++    +.||||++|.||+|||+
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fv-s~~EF~~~i~~~~fLE~a~~~gnyYGT~   82 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFV-TEEEFEELIERDEFLEWAEYHGNYYGTS   82 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeC-CHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence            4678999999   79999999999944455555   679999999999999 9999999    56999999999999999


Q ss_pred             ccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC----------CCC
Q psy16887         99 RSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------PGN  144 (160)
Q Consensus        99 ~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------~~~  144 (160)
                      +..           ++||+-             +.||+.|||   ..++++||..+.+++.+.+..|          ..-
T Consensus        83 ~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs---~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~  159 (191)
T COG0194          83 REPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPS---LEELERRLKGRGTDSEEVIARRLENAKKEISHADE  159 (191)
T ss_pred             HHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCC---HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            644           455432             789999997   6778889887766655555444          455


Q ss_pred             Ccceeccccccccc
Q psy16887        145 SHGICHPVKLNNMF  158 (160)
Q Consensus       145 ~~~~~~~v~l~~~~  158 (160)
                      .++...|.||+.|+
T Consensus       160 fdyvivNdd~e~a~  173 (191)
T COG0194         160 FDYVIVNDDLEKAL  173 (191)
T ss_pred             CCEEEECccHHHHH
Confidence            78888899998775

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.88  E-value=3.8e-23  Score=165.12  Aligned_cols=127  Identities=10%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             CCCcEEEEccC---hHHHHHHHHhhCCCCccc-cc---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA-PH---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~-~~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      .+++|||+|||   |++|.++|++.+|+.|.. +|   +||+||.+|++|||| |+++|++    +.|+||++|.||+||
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fv-s~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFL-TIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeC-CHHHHHHHHHcCCeEEEEEECCeeec
Confidence            46789999999   699999999999986433 35   578999999999999 9999999    459999999999999


Q ss_pred             ccccc-----------cccCCC--------------eEEEecCCCCCCccccccccCcc---chHHHHHHHhC-------
Q psy16887         97 SNRSD-----------DLDSNP--------------RVYTRPWKNGKPGKSMDLKIRPK---VMENVKTLREK-------  141 (160)
Q Consensus        97 ts~~a-----------vldi~~--------------ivvfi~pks~k~iK~~~~~l~p~---s~e~~k~l~er-------  141 (160)
                      |++.+           ++|+++              ++||+.|||   ...+.+|+..+   +.+.+++..++       
T Consensus        82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps---~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~  158 (186)
T PRK14737         82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPS---EEEWEERLIHRGTDSEESIEKRIENGIIELDE  158 (186)
T ss_pred             CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCC---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence            99764           444332              689998887   34445555433   33333332222       


Q ss_pred             CCCCcceeccccccccc
Q psy16887        142 PGNSHGICHPVKLNNMF  158 (160)
Q Consensus       142 ~~~~~~~~~~v~l~~~~  158 (160)
                      ....+++..|.+|+++.
T Consensus       159 ~~~~D~vI~N~dle~a~  175 (186)
T PRK14737        159 ANEFDYKIINDDLEDAI  175 (186)
T ss_pred             hccCCEEEECcCHHHHH
Confidence            45667777778888764

>smart00072 GuKc Guanylate kinase homologues

Probab=99.88  E-value=3.1e-23  Score=163.54  Aligned_cols=126  Identities=19%  Similarity=0.289  Sum_probs=95.2

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCccccc-----CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPH-----PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~-----~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      .|||||+|||   |++|.++|++++|+.|..++     ++|++|.+|++|+|+ |+++|++    +.|+||++|.||+||
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fv-s~~ef~~~i~~g~fve~~~~~g~~YG   80 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFV-SREEFEDDIKSGLFLEWGEYSGNYYG   80 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEEC-CHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence            5899999999   89999999999999998883     679999999999999 9999999    459999999999999


Q ss_pred             ccccc-----------cccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC----------C
Q psy16887         97 SNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------P  142 (160)
Q Consensus        97 ts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------~  142 (160)
                      |++.+           ++|++             +++||+.|++.   +.+++|+..++.++.+.+.+|          .
T Consensus        81 t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~---~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~  157 (184)
T smart00072       81 TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSS---EELERRLRGRGTETAERIQKRLAAAQKEAQEY  157 (184)
T ss_pred             cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Confidence            99654           45543             38999988873   335555543322222222221          3


Q ss_pred             CCCcceeccccccccc
Q psy16887        143 GNSHGICHPVKLNNMF  158 (160)
Q Consensus       143 ~~~~~~~~~v~l~~~~  158 (160)
                      ...+++..+.+|+.|+
T Consensus       158 ~~fd~~I~n~~l~~~~  173 (184)
T smart00072      158 HLFDYVIVNDDLEDAY  173 (184)
T ss_pred             ccCCEEEECcCHHHHH
Confidence            4456666677777765

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG3580|consensus

Probab=99.87  E-value=7.3e-23  Score=187.15  Aligned_cols=130  Identities=32%  Similarity=0.536  Sum_probs=112.9

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccccCC-cc-cccCCceeeEEecHHHHhhcccceeeec
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR-RR-NQEKFRWSSFFNSLTKVSATCLTSYGFY   90 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~~~-r~-~E~~g~~Y~Fv~s~~~~e~~~fiE~~~y   90 (160)
                      ..||+||||++++++|+|||||+||.+|...+||.++-||.|..+.+. |. +-.  +.--++ ....+           
T Consensus       615 tkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAkteprdag~~--~stg~i-rL~Tv-----------  680 (1027)
T KOG3580|consen  615 TKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEPRDAGSE--KSTGVI-RLNTV-----------  680 (1027)
T ss_pred             ccCCchhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhccccccCCcc--cccceE-Eehhh-----------
Confidence            679999999999999999999999999999999999999999999543 22 222  222233 33334           


Q ss_pred             cceeecccccccccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC-----CCCCcceeccc
Q psy16887         91 VDLLFGSNRSDDLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-----PGNSHGICHPV  152 (160)
Q Consensus        91 ~~~lygts~~avldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-----~~~~~~~~~~v  152 (160)
                       ..+...++||+||++|             ||||..|.|++.+|.|++||.|.|.+++++||+|     ..++|+||+.|
T Consensus       681 -rqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTI  759 (1027)
T KOG3580|consen  681 -RQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSRKSSRKLYDQANKLKKTCAHLFTATI  759 (1027)
T ss_pred             -HHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccchhHHHHHHHHHHHhhhchhheEeee
Confidence             6677899999999998             9999999999999999999999999999999998     89999999999


Q ss_pred             ccccc
Q psy16887        153 KLNNM  157 (160)
Q Consensus       153 ~l~~~  157 (160)
                      +||-|
T Consensus       760 nLNs~  764 (1027)
T KOG3580|consen  760 NLNSA  764 (1027)
T ss_pred             ccCCC
Confidence            99987

>PLN02772 guanylate kinase

Probab=99.86  E-value=4.9e-22  Score=175.40  Aligned_cols=138  Identities=17%  Similarity=0.213  Sum_probs=103.8

Q ss_pred             ceeeccCC---CC-CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----
Q psy16887         18 YERVSLRH---PG-FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----   81 (160)
Q Consensus        18 Ye~V~~~~---~~-~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----   81 (160)
                      =|+|++..   ++ ..|||||+|||   |++|.++|++++|..|+++  |   ++|++|.+|++|||+ ++++|++    
T Consensus       120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fv-s~eeFe~~i~~  198 (398)
T PLN02772        120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFT-ERSVMEKEIKD  198 (398)
T ss_pred             cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeC-CHHHHHHHHHh
Confidence            47788755   33 77899999999   7999999999999988876  5   568899999999999 9999999    


Q ss_pred             cccceeeeccceeecccccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccch---HH
Q psy16887         82 TCLTSYGFYVDLLFGSNRSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVM---EN  134 (160)
Q Consensus        82 ~~fiE~~~y~~~lygts~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~---e~  134 (160)
                      +.|+||++|.||+|||++.+           ++|+++             ++||+.|++   ..+++.||..+.+   +.
T Consensus       199 g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPS---lEeLe~RL~~RGteseE~  275 (398)
T PLN02772        199 GKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPS---MEELEKRLRARGTETEEQ  275 (398)
T ss_pred             CccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCC---HHHHHHHHHhcCCCCHHH
Confidence            45999999999999999754           444432             778887775   5556667654422   22


Q ss_pred             HH--------HHHhC--CCCCcceecccccccccC
Q psy16887        135 VK--------TLREK--PGNSHGICHPVKLNNMFS  159 (160)
Q Consensus       135 ~k--------~l~er--~~~~~~~~~~v~l~~~~~  159 (160)
                      ++        +|...  +.+.+++..|.+|+.|+.
T Consensus       276 I~kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~  310 (398)
T PLN02772        276 IQKRLRNAEAELEQGKSSGIFDHILYNDNLEECYK  310 (398)
T ss_pred             HHHHHHHHHHHHhhccccCCCCEEEECCCHHHHHH
Confidence            22        12111  345677888889998763

>KOG0707|consensus

Probab=99.79  E-value=5.7e-20  Score=152.08  Aligned_cols=131  Identities=16%  Similarity=0.242  Sum_probs=107.3

Q ss_pred             CCCCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc
Q psy16887         25 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD   92 (160)
Q Consensus        25 ~~~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~   92 (160)
                      .|+.-+||||+||+   +.++..||++++|+.|+++  |   +||.+|.+|.+|||+ +++.|+.    +.|||+..+.|
T Consensus        33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs-~~~~~~s~i~~~~fiE~a~~~g  111 (231)
T KOG0707|consen   33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFS-TTEEFLSMIKNNEFIEFATFSG  111 (231)
T ss_pred             CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceec-cHHHHHHHhhhhhhhhhhhhhc
Confidence            34566999999999   5899999999999999887  5   679999999999999 9999999    44999999999


Q ss_pred             eeecccccc-----------cccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC-------
Q psy16887         93 LLFGSNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-------  141 (160)
Q Consensus        93 ~lygts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-------  141 (160)
                      |+|||++.+           ++||.             ++.+|+.|++   ++.++.|++.+.++...+|.+|       
T Consensus       112 n~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps---~~~~e~rl~~rgte~~~~l~~r~~sa~~e  188 (231)
T KOG0707|consen  112 NKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPS---IKILEERLRARGTETEESLLKRLKSAEEE  188 (231)
T ss_pred             ccCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCc---chhHHHHhhccCcchHHHHHHHHHhhhhh
Confidence            999998755           34432             2777777775   7778888887777777777665       


Q ss_pred             ------CCCCcceecc-cccccccC
Q psy16887        142 ------PGNSHGICHP-VKLNNMFS  159 (160)
Q Consensus       142 ------~~~~~~~~~~-v~l~~~~~  159 (160)
                            ++.+|+...+ .+|++|.+
T Consensus       189 ~~~~~~~g~~d~~~~ns~~lee~~k  213 (231)
T KOG0707|consen  189 FEILENSGSFDLVIVNSDRLEEAYK  213 (231)
T ss_pred             hccccCCccccceecCCCchhhhhh
Confidence                  6678888887 88888753

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.59  E-value=2.5e-15  Score=120.98  Aligned_cols=75  Identities=16%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             CCCCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc
Q psy16887         25 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD   92 (160)
Q Consensus        25 ~~~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~   92 (160)
                      .|...+.|||+|||   |++|.++|.+..+ .|.++  |   ++|++|.+|++|||+ |+++|+.    +.|+||+++.|
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv-~~~~f~~~~~~~~~le~~~~~g   86 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFV-TPEEFREMISQNELLEWAEVYG   86 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeC-CHHHHHHHHHcCCcEEEEEEcC
Confidence            35678899999999   7999999988765 46555  4   567899999999999 9999977    45999999999


Q ss_pred             eeecccccc
Q psy16887         93 LLFGSNRSD  101 (160)
Q Consensus        93 ~lygts~~a  101 (160)
                      |+|||++.+
T Consensus        87 ~~YGt~~~~   95 (206)
T PRK14738         87 NYYGVPKAP   95 (206)
T ss_pred             ceecCCHHH
Confidence            999999754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.39  E-value=1e-12  Score=99.96  Aligned_cols=73  Identities=18%  Similarity=0.256  Sum_probs=64.3

Q ss_pred             cEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887         31 PVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN   98 (160)
Q Consensus        31 PvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts   98 (160)
                      ||+|+||+   |++|.++|.+.+|..|+..  +   +++++|.+|++|+|+ +++.|.+    +.|+|+++|.||+||++
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v-~~~~~~~~~~~~~f~e~~~~~~~~yg~~   79 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFV-SKEEFERLIENGEFLEWAEFHGNYYGTS   79 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEe-CHHHHHHHHHcCCeEEEEEEcCEEecCc
Confidence            68999999   7999999999999887765  3   567899999999999 9999988    45999999999999999


Q ss_pred             cccccc
Q psy16887         99 RSDDLD  104 (160)
Q Consensus        99 ~~avld  104 (160)
                      +.++..
T Consensus        80 ~~~i~~   85 (137)
T cd00071          80 KAAVEE   85 (137)
T ss_pred             HHHHHH
Confidence            877654

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.16  E-value=7.3e-11  Score=91.39  Aligned_cols=71  Identities=15%  Similarity=0.097  Sum_probs=60.2

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCcccc-c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP-H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN   98 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~-~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts   98 (160)
                      ++|+|+||+   |+++.+.|...+|..+... +   +|+.+|.+|.+|+|+ +.+.|..    +.|++++.+.+++||++
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFV-SKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEe-cHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            579999999   7999999999988854332 3   578899999999999 8888877    45999999999999998


Q ss_pred             ccc
Q psy16887         99 RSD  101 (160)
Q Consensus        99 ~~a  101 (160)
                      ..+
T Consensus        81 ~~~   83 (180)
T TIGR03263        81 KSP   83 (180)
T ss_pred             HHH
Confidence            643

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.96  E-value=7.8e-10  Score=87.40  Aligned_cols=70  Identities=19%  Similarity=0.141  Sum_probs=60.1

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      .+.|+|+||+   |++|.+.|...+| .|...  +   +|+.||.+|.+|+|+ +.++|..    +.|++++.+.+|.||
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~   82 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFV-SKEEFEEMIENGEFLEWAEVFGNYYG   82 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEc-CHHHHHHHHHcCCcEEEEEECCcccc
Confidence            4679999998   7999999999998 55554  3   467899999999999 9999888    459999999999999


Q ss_pred             cccc
Q psy16887         97 SNRS  100 (160)
Q Consensus        97 ts~~  100 (160)
                      ++..
T Consensus        83 ~~~~   86 (205)
T PRK00300         83 TPRS   86 (205)
T ss_pred             CcHH
Confidence            9854

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.10  E-value=4.9e-06  Score=64.45  Aligned_cols=69  Identities=14%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCC----cccccCCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDK----FSAPHPRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN   98 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~----F~~~~~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts   98 (160)
                      +.++|+||+   |+++.+.|....+..    |..+++.|+.+.+|.+|+|+ +.++|..    +.|.++.++.++.||++
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIAL-STEEFDHREDGGAFALSWQAHGLSYGIP   80 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCcccccc-CHHHHHHHHHCCCEEEEEeecCccccCh
Confidence            358999999   699999998876532    44456788888999999999 9999876    33999999999999998


Q ss_pred             c
Q psy16887         99 R   99 (160)
Q Consensus        99 ~   99 (160)
                      .
T Consensus        81 ~   81 (179)
T TIGR02322        81 A   81 (179)
T ss_pred             H
Confidence            5

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.82  E-value=1.4e-05  Score=62.88  Aligned_cols=70  Identities=14%  Similarity=0.081  Sum_probs=53.1

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCccccc--CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccccc
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSAPH--PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSNRS  100 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~--~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts~~  100 (160)
                      ..|+|+||+   |+||.+.|....+..|...+  ..|+....+.+|+++ +.++|.+    +.|.++..+.||+|||++.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~   81 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIAL-SEQEFFTRAGQNLFALSWHANGLYYGVGIE   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeE-cHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence            468999999   79999999887654454543  344445567889999 7777655    4588777999999999974

>PRK08356 hypothetical protein; Provisional

Probab=97.81  E-value=1.1e-05  Score=64.12  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=51.4

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCcccc---c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP---H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~---~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      ..|+|+||+   |+|+.++| ++    ++.+   .   .++..+.+|.+|+|+ +...|+.    +.|+|+|++.++.||
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l-~~----~g~~~is~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~e~g~~~~~~yG   79 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFF-EE----KGFCRVSCSDPLIDLLTHNVSDYSWV-PEVPFKGEPTRENLIELGRYLKEKYG   79 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHH-HH----CCCcEEeCCCcccccccccccccccc-cHHHHhhccccccHHHHHHHHHHhcC
Confidence            458899998   79999999 44    2333   2   246788999999999 9988876    459999999999999


Q ss_pred             cc
Q psy16887         97 SN   98 (160)
Q Consensus        97 ts   98 (160)
                      |+
T Consensus        80 ~~   81 (195)
T PRK08356         80 ED   81 (195)
T ss_pred             cH
Confidence            97

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.37  E-value=0.004  Score=50.38  Aligned_cols=107  Identities=12%  Similarity=0.042  Sum_probs=71.9

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCC--ccccc--CCcccccCCceeeEEecHHHHhh----cccceeeeccceeecc
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDK--FSAPH--PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGS   97 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~--F~~~~--~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygt   97 (160)
                      -|-|+++|||   ||+|.+-+...++..  |-+.+  -.|+.+-.|-+.-=+ |..+|..    +.|--.=+-+|..||.
T Consensus         5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~av-s~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDAL-SEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCccccccc-CHHHHHHHhhcCceeEEehhcCccccC
Confidence            4679999999   799998877777765  44443  456665556666667 8888877    4588888899999999


Q ss_pred             cccccccCC-C-----------------------eEEEecCCCCCCccccccccCccchHHHHHHHhC
Q psy16887         98 NRSDDLDSN-P-----------------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK  141 (160)
Q Consensus        98 s~~avldi~-~-----------------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er  141 (160)
                      ...--.++. +                       .||+-.++     ..+.+||.-+..|+.+++..|
T Consensus        84 p~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p-----~VLaqRL~~RGREs~eeI~aR  146 (192)
T COG3709          84 PAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASP-----EVLAQRLAERGRESREEILAR  146 (192)
T ss_pred             chhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCH-----HHHHHHHHHhccCCHHHHHHH
Confidence            864332221 1                       22222222     446677777777777777766

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=95.03  E-value=0.018  Score=49.73  Aligned_cols=59  Identities=8%  Similarity=0.071  Sum_probs=42.9

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHHhh----cccceee
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYG   88 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~   88 (160)
                      +..|+|+||+   |.+|-.+|.+.++...-.+          +   .|+++|.+|+.|||+ +...++.    +.|++++
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhli-d~~~~~~~~s~~~f~~~a   82 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLI-DILDPTESYSVADFQRDA   82 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEee-cccChhhcccHHHHHHHH
Confidence            3568999999   6899999999887643222          2   468899999999999 6544443    4466655

>KOG3812|consensus

Probab=87.21  E-value=0.4  Score=42.91  Aligned_cols=49  Identities=18%  Similarity=0.110  Sum_probs=31.2

Q ss_pred             CCeEEEecCCCCCCccccccccCccchHHHHHHHhC-----------CCCCcceecccccccc
Q psy16887        106 NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-----------PGNSHGICHPVKLNNM  157 (160)
Q Consensus       106 ~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-----------~~~~~~~~~~v~l~~~  157 (160)
                      .||.++++-.+.|.+   .+-|+-+++-.+|.|.-+           ++-++.+....+|++|
T Consensus       284 aPI~v~ikvSspKvL---qrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLedA  343 (475)
T KOG3812|consen  284 APIIVYIKVSSPKVL---QRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDA  343 (475)
T ss_pred             cceEEEEEeCCHHHH---HHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHHH
Confidence            469999988765444   333443444455555554           6777777777788776

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=85.86  E-value=1  Score=38.66  Aligned_cols=43  Identities=9%  Similarity=0.074  Sum_probs=34.1

Q ss_pred             cEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEE
Q psy16887         31 PVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFF   73 (160)
Q Consensus        31 PvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv   73 (160)
                      .|+|+||+   |.+|-.+|.+.++...-++          +   .|+++|.+|+.|||+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhli   59 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLI   59 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEE
Confidence            37999998   6899999999987543332          1   357789999999998

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		2e-11
3lh5_A	251	Crystal Structure Of The Sh3-Guanylate Kinase Core		3e-11
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		3e-11
3kfv_A	308	Crystal Structure Of The Sh3-Kinase Fragment Of Tig		4e-08
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		5e-06
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		7e-06
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		7e-06
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		1e-05
3tvt_A	292	Structural Basis For Discs Large Interaction With P		7e-05

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPD--KFSAPHPR 60
           +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD  + +   PR
Sbjct: 208 TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPR 257

>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain Of Zo-1 Length = 251

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 35/43 (81%)
Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFS 55
           +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD + 
Sbjct: 76  TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQ 118

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPD--KFSAPHPR 60
           +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD  + +   PR
Sbjct: 216 TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPR 265

>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight Junction Protein 3 (Tjp3) In Apo-Form Length = 308

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 14  KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 54
           ++P YERV LR   F RPVV+ GPVAD+A  KL  + PD+F
Sbjct: 130 RYPPYERVVLREASFKRPVVILGPVADIAXQKLTAEXPDQF 170

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 17  AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSA--PHPRRRNQE 65
           +YE V+     + RP+++ GP  D A D LL +FPDKF +  PH  R  +E
Sbjct: 519 SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKRE 569

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 17  AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSA--PH---PRRRNQEKFRWSS 71
           +YE V+     + RP+++ GP  D A D LL +FPDKF +  PH   P+R  +   R   
Sbjct: 93  SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 152
Query: 72  FFNSLTK----VSATCLTSYGFYVDLLFGSN 98
           F +S  K    + A      G Y   L+G++
Sbjct: 153 FVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 183

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 17  AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSA--PH---PRRRNQEKFRWSS 71
           +YE V+     + RP+++ GP  D A D LL +FPDKF +  PH   P+R  +   R   
Sbjct: 99  SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 158
Query: 72  FFNSLTK----VSATCLTSYGFYVDLLFGSN 98
           F +S  K    + A      G Y   L+G++
Sbjct: 159 FVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 189

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 13  SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSA--PHPRR 61
           SK  +YE V+ +   + RPV++ GP+ D   D L+ +FPDKF +  PH  R
Sbjct: 90  SKVLSYEPVNQQEVNYTRPVIILGPMKDRVNDDLISEFPDKFGSCVPHTTR 140

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 10  DSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSA--PH---PRRRNQ 64
           +++  + A +R+S+    + RPV++ GP+ D   D L+ ++PDKF +  PH   P+R  +
Sbjct: 84  ENVLSYEAVQRLSI---NYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYE 140
Query: 65  EKFRWSSFFNSLTK----VSATCLTSYGFYVDLLFGSN 98
              R   F +S  +    +        G Y D L+G++
Sbjct: 141 VDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTS 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	3e-13
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	1e-11
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	3e-11
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	8e-11
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	1e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-08

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 25/71 (35%), Positives = 34/71 (47%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
              +D+       ++P YERV LR   F RPVV+ GPVAD+A  KL  + PD+F      
Sbjct: 117 RSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETV 176

Query: 61  RRNQEKFRWSS 71
            R     +   
Sbjct: 177 SRTDSPSKIIK 187

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 14  KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF--SAPH---PRRRNQE 65
              +YE V+     + RP+++ GP  D A D LL +FPDKF    PH   P+R  + 
Sbjct: 90  SVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEI 146

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 15  FPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF--SAPHPRR--RNQEK 66
             +YE V      + RPV++ GP+ D   D L+ ++PDKF    PH  R  R  E 
Sbjct: 86  VLSYEAVQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEV 141

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 58.4 bits (140), Expect = 8e-11
 Identities = 31/79 (39%), Positives = 45/79 (56%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
              +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +      
Sbjct: 196 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE 255

Query: 61  RRNQEKFRWSSFFNSLTKV 79
            R+    + SS    L  +
Sbjct: 256 PRDAGTDQRSSGIIRLHTI 274

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 31/79 (39%), Positives = 45/79 (56%)

Query: 1   DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
              +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +      
Sbjct: 204 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE 263

Query: 61  RRNQEKFRWSSFFNSLTKV 79
            R+    + SS    L  +
Sbjct: 264 PRDAGTDQRSSGIIRLHTI 282

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 15  FPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHP 59
             +YE V+     + RP+++ GP  D A D LL +FPDKF +  P
Sbjct: 517 VLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVP 561

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	100.0
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.95
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.94
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.93
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.89
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.86
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.85
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.76
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.51
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.47
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.34
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	99.24
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.16
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.92
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.51
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.25
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.62
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.98
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.21
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.78
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.77
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.38
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	89.8

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=100.00  E-value=1.5e-34  Score=244.21  Aligned_cols=144  Identities=25%  Similarity=0.346  Sum_probs=121.1

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cc
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TC   83 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~   83 (160)
                      ..+++||+|+++++++.|||||+||+|++|+++|++++|++|++|  |   +||+||.+|++||||+++++|++    +.
T Consensus        84 ~~~~~YE~V~~~~~~~~RpvVl~Gp~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~  163 (292)
T 3tvt_A           84 ENVLSYEAVQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHL  163 (292)
T ss_dssp             --CCCEEEEEEEECSSCCCEEEESTTHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC
T ss_pred             ccccchheEEeccCCCCCeEEEeCCCHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCc
Confidence            457899999999999999999999999999999999999999887  4   67999999999999989999998    45


Q ss_pred             cceeeeccceeecccc-----------cccccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHH
Q psy16887         84 LTSYGFYVDLLFGSNR-----------SDDLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLR  139 (160)
Q Consensus        84 fiE~~~y~~~lygts~-----------~avldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~  139 (160)
                      ||||++|.||+|||++           +++|||++             ++|||.|||   ++.++++++..+++++++++
T Consensus       164 flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS---~e~L~~r~~~r~~e~~~~~~  240 (292)
T 3tvt_A          164 FIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKS---VDSVMEMNRRMTEEQAKKTY  240 (292)
T ss_dssp             EEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSC---HHHHHHTCTTSCTTHHHHHH
T ss_pred             eEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCC---HHHHHHHHhCCCchhHHHHH
Confidence            9999999999999995           55777754             899999998   55555666666666776666


Q ss_pred             hC--------CCCCcceecccccccccC
Q psy16887        140 EK--------PGNSHGICHPVKLNNMFS  159 (160)
Q Consensus       140 er--------~~~~~~~~~~v~l~~~~~  159 (160)
                      +|        +.+++++..|.+|+.|+.
T Consensus       241 ~r~~k~e~e~~~~fD~vIvNddle~a~~  268 (292)
T 3tvt_A          241 ERAIKMEQEFGEYFTGVVQGDTIEEIYS  268 (292)
T ss_dssp             HHHHHHHHHHTTTCSEEECCSSHHHHHH
T ss_pred             HHHHHHHHhhhhhCCEEEECcCHHHHHH
Confidence            65        666777777888888763

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.95  E-value=8.8e-29  Score=208.47  Aligned_cols=143  Identities=24%  Similarity=0.367  Sum_probs=112.3

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cc
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TC   83 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~   83 (160)
                      ..+++||+|+++++.+.|||||+||+|++|.++|++++|+.|.+|  |   ++|+||.+|++|||++|+++|++    +.
T Consensus        89 ~~~~~Ye~V~~~~~~~~r~ivl~GPgK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~  168 (295)
T 1kjw_A           89 DSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHK  168 (295)
T ss_dssp             CCCCCEEEEEEEECCSCCCEEEESTTHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC
T ss_pred             CCCCCcceeeeecCCCCCEEEEECCCHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCC
Confidence            468899999999999999999999999999999999999999887  3   67999999999999889999998    55


Q ss_pred             cceeeeccceeeccccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHH
Q psy16887         84 LTSYGFYVDLLFGSNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLR  139 (160)
Q Consensus        84 fiE~~~y~~~lygts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~  139 (160)
                      ||||++|.||+|||++.           +++|++             |++|||.|+|.+.++.+..|..   .+.++++.
T Consensus       169 flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~t---~~~i~~rl  245 (295)
T 1kjw_A          169 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRIT---EEQARKAF  245 (295)
T ss_dssp             EEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSC---HHHHHHHH
T ss_pred             cEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcCC---HHHHHHHH
Confidence            99999999999999964           456654             3899999998655555433332   22222222


Q ss_pred             hC--------CCCCcceeccccccccc
Q psy16887        140 EK--------PGNSHGICHPVKLNNMF  158 (160)
Q Consensus       140 er--------~~~~~~~~~~v~l~~~~  158 (160)
                      ++        .+..+++..|.+|+.|+
T Consensus       246 ~~a~~~e~~~~~~fd~vivNd~le~a~  272 (295)
T 1kjw_A          246 DRATKLEQEFTECFSAIVEGDSFEEIY  272 (295)
T ss_dssp             HHHHHHHHHHGGGCSEEECCSSHHHHH
T ss_pred             HHHHHHHHhccccCeEEEECcCHHHHH
Confidence            22        34456666777888765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.94  E-value=4.5e-27  Score=217.40  Aligned_cols=143  Identities=24%  Similarity=0.370  Sum_probs=114.3

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cc
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TC   83 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~   83 (160)
                      ..+++||+|+++++.+.|||||+||+|++|+++|++++|+.|.+|  |   ++|+||.+|++|||++|+++|++    +.
T Consensus       515 ~~~~~Ye~V~~~~~~~~r~vvl~GP~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~  594 (721)
T 2xkx_A          515 DSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHK  594 (721)
T ss_pred             ccCCCceeeecccCCCCCEEEEECCCHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCC
Confidence            467899999999999999999999999999999999999989887  4   57899999999999988999999    45


Q ss_pred             cceeeeccceeeccccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHH
Q psy16887         84 LTSYGFYVDLLFGSNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLR  139 (160)
Q Consensus        84 fiE~~~y~~~lygts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~  139 (160)
                      ||||++|.||+|||++.           ++||++             |++|||.|+|.+.++.++.|...   +.++++.
T Consensus       595 flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t~---~~~~~rl  671 (721)
T 2xkx_A          595 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITE---EQARKAF  671 (721)
T ss_pred             ceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccCCH---HHHHHHH
Confidence            99999999999999964           456654             38999999987777664444422   2222222


Q ss_pred             hC--------CCCCcceeccccccccc
Q psy16887        140 EK--------PGNSHGICHPVKLNNMF  158 (160)
Q Consensus       140 er--------~~~~~~~~~~v~l~~~~  158 (160)
                      ++        ..+++++..|.+|+.|+
T Consensus       672 ~~a~~~e~~~~~~fd~vi~Nd~l~~a~  698 (721)
T 2xkx_A          672 DRATKLEQEFTECFSAIVEGDSFEEIY  698 (721)
T ss_pred             HHHHHHHHhccccCcEEEECcCHHHHH
Confidence            22        44566667777888775

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.93  E-value=6.8e-27  Score=185.71  Aligned_cols=127  Identities=17%  Similarity=0.305  Sum_probs=100.4

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      .|||||+|||   |++|.++|++++|+.|.++  |   |||+||.+|++|||+ |+++|++    +.||||++|.||+||
T Consensus         1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fv-s~~eF~~~i~~g~flE~~~~~g~~YG   79 (186)
T 1ex7_A            1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYG   79 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEee-cHHHHHHHHHcCCEEEEEEEcCceee
Confidence            4999999999   7999999999999988776  4   679999999999999 9999998    559999999999999


Q ss_pred             ccccc-----------cccCC--------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC----------
Q psy16887         97 SNRSD-----------DLDSN--------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------  141 (160)
Q Consensus        97 ts~~a-----------vldi~--------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------  141 (160)
                      |++.+           +++++              +++||+.|+|   ...+++||+.+.+++.+++.+|          
T Consensus        80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps---~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~  156 (186)
T 1ex7_A           80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS---VEDLKKRLEGRGTETEESINKRLSAAQAELAY  156 (186)
T ss_dssp             EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSC---HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCC---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence            99654           44442              2788998886   5667777765544333333322          


Q ss_pred             --CCCCcceecccccccccC
Q psy16887        142 --PGNSHGICHPVKLNNMFS  159 (160)
Q Consensus       142 --~~~~~~~~~~v~l~~~~~  159 (160)
                        ...++++..|.||+.|+.
T Consensus       157 ~~~~~fD~vIvNddle~a~~  176 (186)
T 1ex7_A          157 AETGAHDKVIVNDDLDKAYK  176 (186)
T ss_dssp             HTTTCSSEEEECSSHHHHHH
T ss_pred             ccccCCcEEEECcCHHHHHH
Confidence              345678888999998763

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.89  E-value=9.3e-25  Score=190.27  Aligned_cols=134  Identities=30%  Similarity=0.488  Sum_probs=101.6

Q ss_pred             cccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc-cCCcccccCCceeeEEecHHHHhhcccceeeec
Q psy16887         12 ISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP-HPRRRNQEKFRWSSFFNSLTKVSATCLTSYGFY   90 (160)
Q Consensus        12 ~~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~-~~~r~~E~~g~~Y~Fv~s~~~~e~~~fiE~~~y   90 (160)
                      ...+++||+|++++|++.|||||+|||+++|+++|++++|++|+++ .+||+||.+|++|||+ +++.++.         
T Consensus       215 ~~~~~~YE~V~~~~~~~~r~iVlsGPsg~tl~~~L~~~~p~~~~~~tr~pR~gE~dG~~Y~Fv-~~~~V~~---------  284 (391)
T 3tsz_A          215 QTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGII-RLHTIKQ---------  284 (391)
T ss_dssp             --CCCSEEEEEEEECSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCCCCCSSSCCC--CCC-CHHHHHH---------
T ss_pred             cccCCCcceEECcCCCCCCEEEEECCCHHHHHHHHHhhCccccccccCCCCCcccCCccCCcC-cHHHHHH---------
Confidence            3568999999999999999999999999999999999999999988 4689999999999999 9998855         


Q ss_pred             cceeecccccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC--------CCCCccee
Q psy16887         91 VDLLFGSNRSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK--------PGNSHGIC  149 (160)
Q Consensus        91 ~~~lygts~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er--------~~~~~~~~  149 (160)
                         .-..-++++|||             .|++|||.|||.+.++.++.|+...+.+.+++|.++        ..+++++.
T Consensus       285 ---~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~~~~fd~vi  361 (391)
T 3tsz_A          285 ---IIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI  361 (391)
T ss_dssp             ---HHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHGGGCSEEE
T ss_pred             ---HHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccccCcEEE
Confidence               112234455544             359999999998777776566655555555555443        45666777


Q ss_pred             cccccc-ccc
Q psy16887        150 HPVKLN-NMF  158 (160)
Q Consensus       150 ~~v~l~-~~~  158 (160)
                      .|.+|+ .|+
T Consensus       362 vNd~l~~~a~  371 (391)
T 3tsz_A          362 NLNSMNDGWY  371 (391)
T ss_dssp             ECCTTCCHHH
T ss_pred             ECCCcHHHHH
Confidence            778887 365

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.86  E-value=6.5e-23  Score=183.02  Aligned_cols=133  Identities=30%  Similarity=0.501  Sum_probs=94.6

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccccC-CcccccCCceeeEEecHHHHhhcccceeeecc
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHP-RRRNQEKFRWSSFFNSLTKVSATCLTSYGFYV   91 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~~-~r~~E~~g~~Y~Fv~s~~~~e~~~fiE~~~y~   91 (160)
                      ..+++||+|++++|++.|||||+|||+..|+++|++++|++|.+|.| ||+||++|++|||+ +++.++.          
T Consensus       208 ~~~~~YEeV~~~~~~~~r~iVlsGPsG~Gl~~~Ll~~~p~~f~s~~TRpR~gE~dG~~Y~FT-s~~~V~~----------  276 (468)
T 3shw_A          208 TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGII-RLHTIKQ----------  276 (468)
T ss_dssp             CCCCSEEEEEEECCSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCBC----------CBC-CHHHHHH----------
T ss_pred             ccCCCcceeEcccCCCCCEEEEECCCHHHHHHHHHHhCCCceeeecCCCCCcccccccCCcc-cHHHHHH----------
Confidence            57889999999999999999999999988999999999999998843 68999999999997 9998855          


Q ss_pred             ceeecccccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC--------CCCCcceec
Q psy16887         92 DLLFGSNRSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK--------PGNSHGICH  150 (160)
Q Consensus        92 ~~lygts~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er--------~~~~~~~~~  150 (160)
                        .-...++++|||             .|++|||.|||.+.++.+++|+...+.+.+++|.++        ..+++++..
T Consensus       277 --vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~~~~fD~vIv  354 (468)
T 3shw_A          277 --IIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTIN  354 (468)
T ss_dssp             --HHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGCSEEEE
T ss_pred             --HHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhhccCCEEEE
Confidence              112234455554             359999999998888777777776555666655554        455666666


Q ss_pred             ccccc-ccc
Q psy16887        151 PVKLN-NMF  158 (160)
Q Consensus       151 ~v~l~-~~~  158 (160)
                      |.+|+ .|+
T Consensus       355 Nddl~d~a~  363 (468)
T 3shw_A          355 LNSMNDGWY  363 (468)
T ss_dssp             CBTTBCHHH
T ss_pred             CCCcHHHHH
Confidence            77884 665

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.85  E-value=4.6e-23  Score=175.70  Aligned_cols=141  Identities=24%  Similarity=0.321  Sum_probs=96.6

Q ss_pred             CCccceecCCcccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccccCCcccccCCceeeEEecHHHHhh
Q psy16887          2 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSA   81 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~~~r~~E~~g~~Y~Fv~s~~~~e~   81 (160)
                      .|||.++......+++||+|+++++.++|||||+||++++|++||+++||++|++|.|-   +.+....-|+ +++.++.
T Consensus       118 ~~~d~~~~~~~~~~~~YE~V~~~~~~~~RPvVl~GP~k~~l~~~L~~~~P~~F~~~v~~---~r~i~~~~fi-s~~~V~~  193 (308)
T 3kfv_A          118 SREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETV---SRTDSPSKII-KLDTVRV  193 (308)
T ss_dssp             --CCCHHHHHHHTCCSEEEEEEEECSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCC-----------CC-CHHHHHH
T ss_pred             cccccccccccCCCcCchheeccccCCCCeEEEeCccHHHHHHHHHHhCcccccccccc---cccccCCCee-cHHHHHH
Confidence            36676665556788999999999999999999999999999999999999999999752   2234455577 8877754


Q ss_pred             cccceeeeccceeecccccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC-------
Q psy16887         82 TCLTSYGFYVDLLFGSNRSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-------  141 (160)
Q Consensus        82 ~~fiE~~~y~~~lygts~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-------  141 (160)
                                  .-...++++|||             .|++|||.|||.+.++.++.|+...+.+.+++|.+.       
T Consensus       194 ------------vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~  261 (308)
T 3kfv_A          194 ------------IAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKH  261 (308)
T ss_dssp             ------------HHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHH
T ss_pred             ------------HHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Confidence                        112234455554             359999999997777765555544444455555443       


Q ss_pred             -CCCCccee-ccccccccc
Q psy16887        142 -PGNSHGIC-HPVKLNNMF  158 (160)
Q Consensus       142 -~~~~~~~~-~~v~l~~~~  158 (160)
                       ..+++++. .|.||+.|+
T Consensus       262 ~~~~FD~vI~VNDdle~A~  280 (308)
T 3kfv_A          262 SSHLFTATIPLNGTSDTWY  280 (308)
T ss_dssp             HGGGCSEEEEECSSSTHHH
T ss_pred             hhccCcEEEEcCCCHHHHH
Confidence             34555666 566888875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.76  E-value=5.1e-19  Score=141.76  Aligned_cols=130  Identities=17%  Similarity=0.205  Sum_probs=95.2

Q ss_pred             CCCCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc
Q psy16887         25 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD   92 (160)
Q Consensus        25 ~~~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~   92 (160)
                      ++...++|+|+|||   |++|.++|++.+|+.|..+  +   ++|+||.+|++|+|+ ++++|++    +.|+||+++.|
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fv-s~~~f~~~i~~~~fle~~~~~~   93 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFI-STEEMTRNISANEFLEFGSYQG   93 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEEC-CHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceec-cHHHhhhhhhhhhhhhhhhhhc
Confidence            44567899999999   7999999999999877766  3   578899999999999 9999988    46999999999


Q ss_pred             eeecccccc-----------cccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhCCCCCcce
Q psy16887         93 LLFGSNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREKPGNSHGI  148 (160)
Q Consensus        93 ~lygts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er~~~~~~~  148 (160)
                      |+|||++.+           ++|++             +++|||.|||.....+-.+++..+. +.++.-+  ....+++
T Consensus        94 n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~~~~e~~~~i~~r~-~~~~~~~--~~~fd~v  170 (197)
T 3ney_A           94 NMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDS-EAIRSQY--AHYFDLS  170 (197)
T ss_dssp             EEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBSSCCHHHHHHHHHH-HHHHHHH--GGGCSEE
T ss_pred             eecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCccccchHHHHHHHHH-HHHHHhh--ccCCCEE
Confidence            999998543           45543             2789999988543332222222222 1111111  4567788


Q ss_pred             eccccccccc
Q psy16887        149 CHPVKLNNMF  158 (160)
Q Consensus       149 ~~~v~l~~~~  158 (160)
                      ..|.||+.|+
T Consensus       171 ivNd~l~~a~  180 (197)
T 3ney_A          171 LVNNGVDETL  180 (197)
T ss_dssp             EEESCHHHHH
T ss_pred             EECCCHHHHH
Confidence            8888998875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=2.1e-14  Score=112.86  Aligned_cols=127  Identities=16%  Similarity=0.075  Sum_probs=87.9

Q ss_pred             CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887         28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF   95 (160)
Q Consensus        28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly   95 (160)
                      ..+.|+|+||+   |+|+.++|...+|..|..+  +   +++.+|.+|.+|+|+ +.+.|..    +.|+|++++.+|+|
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~-~~~~f~~~~~~~~~le~~~~~~~~y   85 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFR-SREVFEQAIKDGKMLEYAEYVGNYY   85 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEe-cHHHHHHHHhcCcEEEEEEEccccC
Confidence            34679999999   7999999999998756665  3   678899999999999 9999988    56999999999999


Q ss_pred             ccccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC----------
Q psy16887         96 GSNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------  141 (160)
Q Consensus        96 gts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------  141 (160)
                      ||+..           +++|+.             +.++|+.|++.   ..+.+|+..+.+++.+++.+|          
T Consensus        86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~---~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~  162 (208)
T 3tau_A           86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDL---SELKNRIIGRGTESMEVVEERMETAKKEIEM  162 (208)
T ss_dssp             EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTT---TTSSCC-------CCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            99854           344432             26788877753   445556654433222222211          


Q ss_pred             CCCCcceeccccccccc
Q psy16887        142 PGNSHGICHPVKLNNMF  158 (160)
Q Consensus       142 ~~~~~~~~~~v~l~~~~  158 (160)
                      ....+++..+.+|+.++
T Consensus       163 ~~~~d~vivN~~~~~~~  179 (208)
T 3tau_A          163 MASYDYAVVNDVVANAV  179 (208)
T ss_dssp             GGGSSEEEECSSHHHHH
T ss_pred             hccCCEEEECcCHHHHH
Confidence            34556677777777654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.34  E-value=2.2e-12  Score=99.01  Aligned_cols=126  Identities=19%  Similarity=0.299  Sum_probs=84.3

Q ss_pred             CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887         28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF   95 (160)
Q Consensus        28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly   95 (160)
                      ..+.++|+|||   |+||.+.|...+|..|..+  +   +++.+|.+|.+|+|+ +.+.|..    +.|++++.+.+|+|
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~-~~~~~~~~~~~~~~l~~~~~~~n~y   82 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFV-SHDQMMQDISNNEYLEYGSHEDAMY   82 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEe-CHHHHHHHHHcCCceEEEEEcCccc
Confidence            34689999999   7999999999998656554  3   567899999999999 9998877    45999999999999


Q ss_pred             cccccc-----------cccCC-------------CeEEEecCCCCCCccccccc---cCccchHHHHHHHh-CCCCCcc
Q psy16887         96 GSNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLK---IRPKVMENVKTLRE-KPGNSHG  147 (160)
Q Consensus        96 gts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~---l~p~s~e~~k~l~e-r~~~~~~  147 (160)
                      |++..+           ++|++             +.+||+.|++...+   ++|   + .+-.++.++|.. ...+.++
T Consensus        83 g~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l---~~R~~~i-~r~~~~~~~~~~~~~~~~d~  158 (180)
T 1kgd_A           83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPG---LNEDESL-QRLQKESDILQRTYAHYFDL  158 (180)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTT---SCCSHHH-HHHHHHHHHHHHHHGGGCSE
T ss_pred             cccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHH---HhhHHHH-HHHHHHHHHHHHhhhCCCcE
Confidence            997533           33332             27888888764433   333   1 010112223321 1355666


Q ss_pred             eeccccccccc
Q psy16887        148 ICHPVKLNNMF  158 (160)
Q Consensus       148 ~~~~v~l~~~~  158 (160)
                      +..|.+|+.|+
T Consensus       159 ~i~n~~~~~~~  169 (180)
T 1kgd_A          159 TIINNEIDETI  169 (180)
T ss_dssp             EEECSSHHHHH
T ss_pred             EEECcCHHHHH
Confidence            66677777664

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=99.24  E-value=4e-13  Score=115.71  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=78.5

Q ss_pred             ccCccceeeccCCCCCCCcEEEEccCh------HHHHHHHHhhCCCCcccc--cC--CcccccCCcee--eEEecHHHHh
Q psy16887         13 SKFPAYERVSLRHPGFIRPVVLFGPVA------DLARDKLLKDFPDKFSAP--HP--RRRNQEKFRWS--SFFNSLTKVS   80 (160)
Q Consensus        13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk------~~l~~~L~~~~P~~F~~~--~~--~r~~E~~g~~Y--~Fv~s~~~~e   80 (160)
                      ..+++||.|-     ..|||||+||+.      |.+.++|+...|.+|+.+  ++  ++..+..++.+  +++ ++..|+
T Consensus       131 ~~~~~Ye~vp-----~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~-~~~~~e  204 (337)
T 4dey_A          131 EHTPPYDVVP-----SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPS-KHAIIE  204 (337)
T ss_dssp             --CCSEEEEC-----SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC----------------
T ss_pred             CCCCCccccC-----CCCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhccc-chhhhc
Confidence            5678999994     669999999995      556777777777777776  22  34455566664  566 888888


Q ss_pred             hc----ccceeeeccceeec---ccccccccCC--------------CeEEEecCCCCCCccccccccCccchHHHHHH-
Q psy16887         81 AT----CLTSYGFYVDLLFG---SNRSDDLDSN--------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTL-  138 (160)
Q Consensus        81 ~~----~fiE~~~y~~~lyg---ts~~avldi~--------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l-  138 (160)
                      ++    .|+|++.--..+..   .-++++|||+              +++|||.|||   ++++++||+.++++..+.| 
T Consensus       205 ~~~~~~~~~ev~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS---~eeLe~RL~~RGt~~~~rl~  281 (337)
T 4dey_A          205 RSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISS---PKVLQRLIKSRGKSQAKHLN  281 (337)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSC---HHHHHHHHHTTCHHHHTTHH
T ss_pred             ccccccchHHHHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcC---HHHHHHHHHhCCchHHHHHH
Confidence            83    27776421111111   1245666543              2899999997   6677777765544332222 


Q ss_pred             ---------HhC-CCCCcceeccccccccc
Q psy16887        139 ---------REK-PGNSHGICHPVKLNNMF  158 (160)
Q Consensus       139 ---------~er-~~~~~~~~~~v~l~~~~  158 (160)
                               .+. .+.++++..|.||+.|+
T Consensus       282 ~al~~ae~E~~~~~~~FDyvIVNDdLe~A~  311 (337)
T 4dey_A          282 VQMVAADKLAQCPPELFDVILDENQLEDAC  311 (337)
T ss_dssp             HHHHHHHHHHHSCGGGCSEEECCSSHHHHH
T ss_pred             HHHHHHHHHHhhCcccCCEEEECCCHHHHH
Confidence                     222 57788888899999886

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.24  E-value=3.4e-12  Score=99.76  Aligned_cols=126  Identities=18%  Similarity=0.208  Sum_probs=89.4

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCccccc-----CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPH-----PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~-----~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      .++++|+||+   |+||.+.|+..+|..|+.+.     +++.||.+|.+|+|+ +.+.|.+    +.|++++.+.+|+||
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~-~~~~~~~~i~~~~~l~~~~~~~n~~g   82 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFV-TREMMQRDIAAGDFIEHAEFSGNLYG   82 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEc-cHHHHHHHHHcCCCEeeeeecCccCC
Confidence            4789999999   79999999999998888873     467889999999999 9888776    559999999999999


Q ss_pred             ccccc-----------cccC-------------CCeEEEecCCCCCCccccccccCcc---chHHHHH-HHhC------C
Q psy16887         97 SNRSD-----------DLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPK---VMENVKT-LREK------P  142 (160)
Q Consensus        97 ts~~a-----------vldi-------------~~ivvfi~pks~k~iK~~~~~l~p~---s~e~~k~-l~er------~  142 (160)
                      ++...           ++++             .++++|+.+++   +..++.+++..   +.+.+++ |.+.      +
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~---~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a  159 (198)
T 1lvg_A           83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS---LDVLEQRLRLRNTETEESLAKRLAAARTDMESS  159 (198)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSC---HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGG
T ss_pred             CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCC---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            97532           1221             24667777764   56666665433   3332221 1110      2


Q ss_pred             ---CCCcceeccccccccc
Q psy16887        143 ---GNSHGICHPVKLNNMF  158 (160)
Q Consensus       143 ---~~~~~~~~~v~l~~~~  158 (160)
                         ...+++..+.+|+.++
T Consensus       160 ~~~~~~D~iivnd~le~a~  178 (198)
T 1lvg_A          160 KEPGLFDLVIINDDLDKAY  178 (198)
T ss_dssp             GSTTTCSEEEECSSHHHHH
T ss_pred             hccCCceEEEECCCHHHHH
Confidence               4566777777777664

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.16  E-value=1e-11  Score=99.69  Aligned_cols=128  Identities=13%  Similarity=0.086  Sum_probs=87.0

Q ss_pred             CCCCcEEEEccC---hHHHHHHHHhhCCC---Cccccc---CCcccccCCceeeEEecHHHHhh----cccceeeeccce
Q psy16887         27 GFIRPVVLFGPV---ADLARDKLLKDFPD---KFSAPH---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDL   93 (160)
Q Consensus        27 ~~~RPvVi~GPs---k~~l~~~L~~~~P~---~F~~~~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~   93 (160)
                      ..-+.++|+||+   |+||.+.|+...|-   .+..++   ++|++|.+|.+|+|+ +.+.|+.    +.|+|+.+|.++
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~~~~   92 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVFGN   92 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHHHhc
Confidence            345789999999   79999999999882   333333   567788999999999 9988877    459999999999


Q ss_pred             eecccccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC--------
Q psy16887         94 LFGSNRSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK--------  141 (160)
Q Consensus        94 lygts~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er--------  141 (160)
                      +|||++..           ++|+++             +.||+.+++   +.++++|+..+++++.+++.+|        
T Consensus        93 ~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~---~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~  169 (219)
T 1s96_A           93 YYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPS---KIELDRRLRGRGQDSEEVIAKRMAQAVAEM  169 (219)
T ss_dssp             EEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSS---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCC---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            99998643           344332             566666654   3444445543333333333322        


Q ss_pred             --CCCCcceeccccccccc
Q psy16887        142 --PGNSHGICHPVKLNNMF  158 (160)
Q Consensus       142 --~~~~~~~~~~v~l~~~~  158 (160)
                        ....+++..|.+|+.|+
T Consensus       170 ~~~~~~d~~i~Nd~l~~a~  188 (219)
T 1s96_A          170 SHYAEYDYLIVNDDFDTAL  188 (219)
T ss_dssp             TTGGGSSEEEECSSHHHHH
T ss_pred             hhccCCCEEEECcCHHHHH
Confidence              23456667778888765

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.92  E-value=1.4e-09  Score=84.51  Aligned_cols=73  Identities=21%  Similarity=0.362  Sum_probs=62.4

Q ss_pred             CCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeecccee
Q psy16887         27 GFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLL   94 (160)
Q Consensus        27 ~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~l   94 (160)
                      ...+.|+|+||+   |+|+.++|.+.+|+.|..+  |   ++|.+|.+|.+|+|+ +.++|..    +.|++++++.|+.
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   88 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFV-DKDDFERKLKEGQFLEFDKYANNF   88 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEEC-CHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeC-CHHHHHHHHHcCCCEEeHHhCCCe
Confidence            456789999999   7999999999998656655  3   567889999999999 9999876    4599999999999


Q ss_pred             eccccc
Q psy16887         95 FGSNRS  100 (160)
Q Consensus        95 ygts~~  100 (160)
                      ||++..
T Consensus        89 ~~~~~~   94 (204)
T 2qor_A           89 YGTLKS   94 (204)
T ss_dssp             EEEEHH
T ss_pred             ecCCHH
Confidence            999753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.51  E-value=6.2e-08  Score=76.29  Aligned_cols=71  Identities=15%  Similarity=0.130  Sum_probs=53.6

Q ss_pred             CCcEEEEccC---hHHHHHHHH-hhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887         29 IRPVVLFGPV---ADLARDKLL-KDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF   95 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~-~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly   95 (160)
                      .+.++|+||+   |+||.+.|. ..+|. |..+  +   +++.++.+|.+|+|. +.+.|..    +.|++++.+.+++|
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  104 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSVSVTTRAARKGEKEGKDYYFV-DREEFLRLCSNGEIIEHAEVFGNFY  104 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC----C-EEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCC-cccccccCCCCCCccccCCCeEEEe-cHHHhhhhhhcCceehhhhhccccC
Confidence            3568999999   689999999 88875 4443  2   567789999999999 8888876    45999999999999


Q ss_pred             cccccc
Q psy16887         96 GSNRSD  101 (160)
Q Consensus        96 gts~~a  101 (160)
                      |++...
T Consensus       105 ~~~~~~  110 (231)
T 3lnc_A          105 GVPRKN  110 (231)
T ss_dssp             EEECTT
T ss_pred             CCCHHH
Confidence            998653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.25  E-value=3.8e-07  Score=69.47  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=56.0

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeecc
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGS   97 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygt   97 (160)
                      .-++|+||+   |+||.+.|....|. +...  +   +++.++..|..|+|. +...|..    +.|++++.+.+++||+
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFI-DETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSSS-EEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCC-eEEeceeccCCCchhHhcCceEEec-cHHHHHHHHhcCcEEeeeeeecccccc
Confidence            458999999   79999999999883 3333  1   456678899999999 8887766    5599999999999999


Q ss_pred             ccc
Q psy16887         98 NRS  100 (160)
Q Consensus        98 s~~  100 (160)
                      +..
T Consensus        86 ~~~   88 (205)
T 3tr0_A           86 EKD   88 (205)
T ss_dssp             EHH
T ss_pred             hHH
Confidence            753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.62  E-value=9.9e-05  Score=58.00  Aligned_cols=71  Identities=24%  Similarity=0.381  Sum_probs=57.0

Q ss_pred             CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887         28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF   95 (160)
Q Consensus        28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly   95 (160)
                      ..+.++|+||+   |+||.+.|...+|..+...  +   +++.++.+|.+|.|. +.+.|..    +.|++++.|.+|+|
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~  100 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFI-DKTIFEDKLKNEDFLEYDNYANNFY  100 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEEC-CHHHHHHhhhccchhhhhhcccccC
Confidence            45789999999   7999999999988333332  2   345678899999999 8888876    45999999999999


Q ss_pred             cccc
Q psy16887         96 GSNR   99 (160)
Q Consensus        96 gts~   99 (160)
                      |++.
T Consensus       101 g~~~  104 (218)
T 1z6g_A          101 GTLK  104 (218)
T ss_dssp             EEEH
T ss_pred             CCcH
Confidence            9874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.98  E-value=0.0011  Score=49.87  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhC-CCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDF-PDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF   95 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~-P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly   95 (160)
                      ...|+|+||+   |+|+.+.|.... |+ ++..  +   .++.++.+|.+|.|. +.+.|..    +.++++..+.+++|
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTS-YKYSISMTTRQMREGEVDGVDYFFK-TRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCC-EECCCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCC-eEEecccccCCCCCCccCCCceEEc-CHHHHHHHHHcCCeEEEEeECCeec
Confidence            3568999998   699999999888 63 4422  2   345568889999998 8877766    36999999999999


Q ss_pred             cccc
Q psy16887         96 GSNR   99 (160)
Q Consensus        96 gts~   99 (160)
                      |++.
T Consensus        84 g~~~   87 (207)
T 2j41_A           84 GTPV   87 (207)
T ss_dssp             EEEH
T ss_pred             CCCH
Confidence            9864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.21  E-value=0.0085  Score=45.98  Aligned_cols=71  Identities=18%  Similarity=0.077  Sum_probs=53.5

Q ss_pred             CCCcEEEEccC---hHHHHHHHHhhCCCCcccc-c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc--ee
Q psy16887         28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP-H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD--LL   94 (160)
Q Consensus        28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~-~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~--~l   94 (160)
                      .-..+.|+||+   |+||.+.|....|..+..- +   +++.++..|..|.|. +...|..    +.|+++..+.+  ++
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q-~~~~~~~~~~~~~l~~~~~~~~n~~~   97 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFI-DPTRFQQLIDQGELLEWAEIHGGLHR   97 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEec-CHHHHHHHHhcCCceeehhhcCchhh
Confidence            44678999999   7999999999887543221 2   345567889999998 7777765    44888888877  78


Q ss_pred             ecccc
Q psy16887         95 FGSNR   99 (160)
Q Consensus        95 ygts~   99 (160)
                      ||++.
T Consensus        98 ~g~~~  102 (207)
T 1znw_A           98 SGTLA  102 (207)
T ss_dssp             EEEEH
T ss_pred             cCCcH
Confidence            89865

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.78  E-value=0.0049  Score=52.56  Aligned_cols=51  Identities=12%  Similarity=0.078  Sum_probs=39.0

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCc----------cccc---CCcccccCCceeeEEecHHHHhh
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKF----------SAPH---PRRRNQEKFRWSSFFNSLTKVSA   81 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F----------~~~~---~~r~~E~~g~~Y~Fv~s~~~~e~   81 (160)
                      +.|+|+||+   |.+|-.+|.+.++..+          +.++   .|+++|.+|+.|||+ +...+..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhli-d~~~~~e   70 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLI-DIKDPSE   70 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESS-SCBCTTS
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEe-ccCChhh
Confidence            458999999   6899999999988533          1222   568899999999999 6555544

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.77  E-value=0.0045  Score=54.35  Aligned_cols=58  Identities=9%  Similarity=0.018  Sum_probs=42.4

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHHhh----cccceee
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYG   88 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~   88 (160)
                      ..|+|+||+   |.+|-.+|.+.++..+-.+          +   .|+++|.+|+.|||+ +...+..    +.|++++
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhli-d~~~~~~~~s~~~F~~~a   80 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM-NHVDWSEEYYSHRFETEC   80 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESC-SCBCTTSCCCHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcC-CccChHhHhhHHHHHHHH
Confidence            358999999   6899999999888644322          2   468899999999998 6555544    2355554

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.38  E-value=0.0049  Score=52.46  Aligned_cols=53  Identities=13%  Similarity=0.135  Sum_probs=40.2

Q ss_pred             CCCcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHHhh
Q psy16887         28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKVSA   81 (160)
Q Consensus        28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~e~   81 (160)
                      .++.|+|+||+   |.+|-.+|.+.++..+-.+          +   .|+++|.+|+.|||+ +...+..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhli-d~~~~~e   77 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL-DIRDPSQ   77 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETS-SCBCTTS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEe-ccCCccc
Confidence            34668999999   7899999999988533221          2   468899999999999 6555544

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=89.80  E-value=0.16  Score=43.32  Aligned_cols=49  Identities=12%  Similarity=0.029  Sum_probs=38.2

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHH
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKV   79 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~   79 (160)
                      +.|||+||+   |.+|-.+|.+.++..|-.+          +   .|+..|..|+.|||+ +...+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhli-di~~~  105 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLL-GEVDP  105 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESS-SCBCG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeec-cccCc
Confidence            358999999   6899999999988544222          2   467889999999998 65555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	6e-09

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 6e-09
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 21 VSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
          V+     + RP+++ GP  D A D LL +FPDKF +  P 
Sbjct: 1  VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPH 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	99.95
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.89
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.86
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.84
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.82
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.72
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	89.63
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	83.39
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	80.22

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1e-29  Score=200.58  Aligned_cols=135  Identities=23%  Similarity=0.343  Sum_probs=105.4

Q ss_pred             eccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeecc
Q psy16887         21 VSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYV   91 (160)
Q Consensus        21 V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~   91 (160)
                      |+++++.++|||||+||+|++++++|++++|+.|+.+  |   |+|+||.+|++||||+++++|++    +.||||++|.
T Consensus         1 v~~~~~~~~Rpivi~Gp~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~   80 (199)
T d1kjwa2           1 VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYN   80 (199)
T ss_dssp             EEEEECCSCCCEEEESTTHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEET
T ss_pred             CccccCCCCCCEEEECcCHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeec
Confidence            5678899999999999999999999999999999887  3   67889999999999978899988    5599999999


Q ss_pred             ceeecccc-----------cccccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC------
Q psy16887         92 DLLFGSNR-----------SDDLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK------  141 (160)
Q Consensus        92 ~~lygts~-----------~avldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er------  141 (160)
                      ||+|||+.           ++++|+++             ++|||.|++...++.+..++   +.+.++++.++      
T Consensus        81 g~~YGt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i~IfI~pps~e~l~~l~kr~---~~~~i~~r~~~~~~~e~  157 (199)
T d1kjwa2          81 SHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRI---TEEQARKAFDRATKLEQ  157 (199)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTS---CHHHHHHHHHHHHHHHH
T ss_pred             CCccceeeeEEEehhcCCCcccccccchHHhhhhhhccceeEEeeccccHHHHHhhhccc---cHHHHHHHHHHHHHHHH
Confidence            99999985           44566543             89999999855555443333   33333333322      


Q ss_pred             --CCCCcceeccccccccc
Q psy16887        142 --PGNSHGICHPVKLNNMF  158 (160)
Q Consensus       142 --~~~~~~~~~~v~l~~~~  158 (160)
                        +++.+++..|.||+.|+
T Consensus       158 ~~~~~fd~vI~Nddle~a~  176 (199)
T d1kjwa2         158 EFTECFSAIVEGDSFEEIY  176 (199)
T ss_dssp             HHGGGCSEEECCSSHHHHH
T ss_pred             HhhccCCEEEECcCHHHHH
Confidence              45566666778888765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.1e-24  Score=163.54  Aligned_cols=129  Identities=19%  Similarity=0.310  Sum_probs=90.3

Q ss_pred             CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887         28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF   95 (160)
Q Consensus        28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly   95 (160)
                      ..|||||+|||   |++|.++|++++|+.|..+  |   |+|++|.+|++|||| |.++|++    +.|+||+++.|++|
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fv-s~~~F~~~~~~g~fie~~~~~g~~Y   80 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFV-SHDQMMQDISNNEYLEYGSHEDAMY   80 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceee-ehhhhhhheecCceEEEeeecccce
Confidence            36899999999   7999999999999999887  3   679999999999999 9999988    56999999999999


Q ss_pred             cccccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC-CCCCcceec
Q psy16887         96 GSNRSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-PGNSHGICH  150 (160)
Q Consensus        96 gts~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-~~~~~~~~~  150 (160)
                      ||++.+           ++++++             ++||+.|++......-++.+ .+-.+.+..+... +.+.++...
T Consensus        81 Gt~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~~IfI~pps~~~~~~~~~~~-~r~~~~~~~~e~~~~~~fD~vIv  159 (178)
T d1kgda_          81 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESL-QRLQKESDILQRTYAHYFDLTII  159 (178)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCCSHHH-HHHHHHHHHHHHHHGGGCSEEEE
T ss_pred             eeeeecccchhccCceEEeccchhhhhhhhccccccceeeEeccccccccchHHHH-HHHHHHHHHHHHHhhcCCCEEEE
Confidence            999644           444432             78888887633221111111 1111111112111 566677777


Q ss_pred             cccccccc
Q psy16887        151 PVKLNNMF  158 (160)
Q Consensus       151 ~v~l~~~~  158 (160)
                      |.|||.|+
T Consensus       160 Nddle~a~  167 (178)
T d1kgda_         160 NNEIDETI  167 (178)
T ss_dssp             CSSHHHHH
T ss_pred             CCCHHHHH
Confidence            88888875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.8e-23  Score=162.39  Aligned_cols=125  Identities=12%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCC-Ccccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPD-KFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~-~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      +.|||+|||   |++|.++|++++|. .|..+  |   |+|+||.+|++|||| |+++|++    +.|+||++|.||+||
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fv-s~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceee-cHHHHHHHhhhhhheeEEEECCceec
Confidence            458999999   79999999999996 46655  4   678999999999999 9999999    569999999999999


Q ss_pred             ccccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC----------C
Q psy16887         97 SNRSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------P  142 (160)
Q Consensus        97 ts~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------~  142 (160)
                      |++.+           ++++++             +++|+.|++   ..+++.||..++.+....+..|          .
T Consensus        82 t~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pps---~~~l~~RL~~Rg~~~~~~i~~Rl~~a~~E~~~~  158 (205)
T d1s96a_          82 TSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPS---KIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY  158 (205)
T ss_dssp             EEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSS---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTG
T ss_pred             cccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeeccc---hHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            99755           334332             677777775   4556666654332222222111          3


Q ss_pred             CCCcceeccccccccc
Q psy16887        143 GNSHGICHPVKLNNMF  158 (160)
Q Consensus       143 ~~~~~~~~~v~l~~~~  158 (160)
                      ...+++..|.||+.|+
T Consensus       159 ~~fD~vIvNddl~~a~  174 (205)
T d1s96a_         159 AEYDYLIVNDDFDTAL  174 (205)
T ss_dssp             GGSSEEEECSSHHHHH
T ss_pred             hCCCEEEECcCHHHHH
Confidence            3456667788888775

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.3e-22  Score=154.70  Aligned_cols=126  Identities=18%  Similarity=0.322  Sum_probs=92.2

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG   96 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg   96 (160)
                      .|||||+|||   |++|.++|++++|+.|..+  |   |+|+||.+|++|||+ |+++|+.    +.|+|+++|.|++||
T Consensus         1 ~rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fv-s~~~f~~~~~~g~f~e~~~~~g~~Yg   79 (186)
T d1gkya_           1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYG   79 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceec-cHHHHHHHHhcccceeeeEEccceee
Confidence            3999999999   6999999999999999876  3   679999999999999 9999988    559999999999999


Q ss_pred             cccccc-----------ccC--------------CCeEEEecCCCCCCccccccccCcc---chHHHH-HHHh-------
Q psy16887         97 SNRSDD-----------LDS--------------NPRVYTRPWKNGKPGKSMDLKIRPK---VMENVK-TLRE-------  140 (160)
Q Consensus        97 ts~~av-----------ldi--------------~~ivvfi~pks~k~iK~~~~~l~p~---s~e~~k-~l~e-------  140 (160)
                      |++.++           ++.              .+.+||+.|++   ...++.|++.+   +.+.++ .|..       
T Consensus        80 ~~~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~---~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~  156 (186)
T d1gkya_          80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS---VEDLKKRLEGRGTETEESINKRLSAAQAELAY  156 (186)
T ss_dssp             EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSC---HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCc---HHHHHHHHHhhccchhHHHHHHHHHHHHHHHh
Confidence            997553           222              12566666654   34455555432   222222 1111       


Q ss_pred             -CCCCCcceeccccccccc
Q psy16887        141 -KPGNSHGICHPVKLNNMF  158 (160)
Q Consensus       141 -r~~~~~~~~~~v~l~~~~  158 (160)
                       ...++++++.|.||+.|.
T Consensus       157 ~~~~~fd~vI~N~dle~a~  175 (186)
T d1gkya_         157 AETGAHDKVIVNDDLDKAY  175 (186)
T ss_dssp             HTTTCSSEEEECSSHHHHH
T ss_pred             hhhcCCCEEEECcCHHHHH
Confidence             144566777888888775

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5.5e-22  Score=153.51  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=94.6

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeecc
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGS   97 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygt   97 (160)
                      |||||+|||   |++|.++|++.+|+.|..+  |   |+|++|.+|.+|+|+ |+++|+.    +.|+|+++|.|++|||
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fv-s~~~f~~~~~~g~~~e~~~~~~~~Yg~   79 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFV-TREMMQRDIAAGDFIEHAEFSGNLYGT   79 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEe-ehhHHHHHhhhhhheeeeEEcCcceec
Confidence            899999999   6999999999999999876  4   678999999999999 9999988    5599999999999999


Q ss_pred             ccccccc------------------------CCCeEEEecCCCCCCccccccccCcc---chHHHHHHHhC---------
Q psy16887         98 NRSDDLD------------------------SNPRVYTRPWKNGKPGKSMDLKIRPK---VMENVKTLREK---------  141 (160)
Q Consensus        98 s~~avld------------------------i~~ivvfi~pks~k~iK~~~~~l~p~---s~e~~k~l~er---------  141 (160)
                      +++++..                        ..++.||+.|++   ...++.||+.+   +.+.+++-.++         
T Consensus        80 ~~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~I~i~~~~---~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~~~~  156 (190)
T d1lvga_          80 SKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS---LDVLEQRLRLRNTETEESLAKRLAAARTDMESSK  156 (190)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSC---HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGG
T ss_pred             ccchhhhhhcCCCceeecchHhhhhhhhhccccceEEEEecch---HHHHHHHHhhccccchHHHHHHHHHHHHHHHhhh
Confidence            9766421                        123677777765   44566666532   33333321111         


Q ss_pred             -CCCCcceecccccccccC
Q psy16887        142 -PGNSHGICHPVKLNNMFS  159 (160)
Q Consensus       142 -~~~~~~~~~~v~l~~~~~  159 (160)
                       ..+.+++..|.|||.|++
T Consensus       157 ~~~~fd~iI~N~dle~a~~  175 (190)
T d1lvga_         157 EPGLFDLVIINDDLDKAYA  175 (190)
T ss_dssp             STTTCSEEEECSSHHHHHH
T ss_pred             hcCCCCEEEECcCHHHHHH
Confidence             344567778888887763

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=7.7e-19  Score=133.44  Aligned_cols=125  Identities=14%  Similarity=0.108  Sum_probs=90.4

Q ss_pred             CcEEEEccC---hHHHHHHHHhhCCCCccc-cc---CCcccccCCceeeEEecHHHHhh----cccceeeecccee--ec
Q psy16887         30 RPVVLFGPV---ADLARDKLLKDFPDKFSA-PH---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLL--FG   96 (160)
Q Consensus        30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~-~~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~l--yg   96 (160)
                      +-|||+|||   |+||.++|++++|+.+.. +|   +||++|.+|++|||+ |.++|++    +.|+|++++.+|+  ||
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fv-s~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFI-DPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeec-cchhhhhhhcccccchhhhcccCccccc
Confidence            568999999   799999999999974332 24   678999999999999 9999998    4599999999976  59


Q ss_pred             cccccc-----------ccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC----------C
Q psy16887         97 SNRSDD-----------LDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------P  142 (160)
Q Consensus        97 ts~~av-----------ldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------~  142 (160)
                      |+..++           +++             .++++|+.|++   ...+++|+..+..++.+++.+|          .
T Consensus        82 ~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~~i~i~~~s---~e~L~~RL~~Rg~~~~e~I~~Rl~~~~~e~~~~  158 (182)
T d1znwa1          82 TLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPS---WQDLQARLIGRGTETADVIQRRLDTARIELAAQ  158 (182)
T ss_dssp             EEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSC---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG
T ss_pred             cccchhhhhhhcCCccccccccchhhhhhhcCcceeEEeeeccc---HHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhH
Confidence            875443           332             23788887776   4556666654433322222222          4


Q ss_pred             CCCcceeccccccccc
Q psy16887        143 GNSHGICHPVKLNNMF  158 (160)
Q Consensus       143 ~~~~~~~~~v~l~~~~  158 (160)
                      ...+++..|.+|+.|+
T Consensus       159 ~~fD~vI~Nddle~a~  174 (182)
T d1znwa1         159 GDFDKVVVNRRLESAC  174 (182)
T ss_dssp             GGSSEEEECSSHHHHH
T ss_pred             hcCCEEEECcCHHHHH
Confidence            5566677788888775

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.63  E-value=0.12  Score=39.59  Aligned_cols=43  Identities=33%  Similarity=0.478  Sum_probs=27.3

Q ss_pred             CCcccCccceeeccCCCCCCCcEEEEccC-h-H--------HHHHHHHhhCCCCcccc
Q psy16887         10 DSISKFPAYERVSLRHPGFIRPVVLFGPV-A-D--------LARDKLLKDFPDKFSAP   57 (160)
Q Consensus        10 ~~~~~~~~Ye~V~~~~~~~~RPvVi~GPs-k-~--------~l~~~L~~~~P~~F~~~   57 (160)
                      ..+..+++|+-|=     .-||||++||+ | -        .|.+=|...|+.+-...
T Consensus         6 kk~~~~~PYdVVP-----smRPvvlvGPsLkGyevTDMMqkALfD~Lk~rF~grI~it   58 (219)
T d1t0hb_           6 KKTEHTPPYDVVP-----SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT   58 (219)
T ss_dssp             -----CCSEEEEC-----SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             cccCCCCCccccc-----CCCceEEECCCcccccHHHHHHHHHHHHHHHhcCCceEEE
Confidence            4456678898764     67999999999 2 2        35566677777765553

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=83.39  E-value=0.34  Score=32.67  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=24.1

Q ss_pred             CCCCcEEEEccC---hHHHHHHHHhhCCCCcc
Q psy16887         27 GFIRPVVLFGPV---ADLARDKLLKDFPDKFS   55 (160)
Q Consensus        27 ~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~   55 (160)
                      -+.|.|+|+||+   |.||.++|.+.+...|.
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i   36 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFNTTSA   36 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            467889999998   69999999998765553

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=80.22  E-value=0.73  Score=30.95  Aligned_cols=27  Identities=19%  Similarity=0.192  Sum_probs=23.0

Q ss_pred             CCcEEEEccC---hHHHHHHHHhhCCCCcc
Q psy16887         29 IRPVVLFGPV---ADLARDKLLKDFPDKFS   55 (160)
Q Consensus        29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~   55 (160)
                      .|-|+|.||+   |+|+-+.|.+.++..|-
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~   32 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL   32 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence            4668888999   79999999999997764