Psyllid ID: psy16949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MYSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK
Secondary Structure (PSIPRED)
cEEEcccccccccEEEEEEEEccccEEEEEccccccHHHHcccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEcccEEEEEEccccccccccccccccccccccccccccccHHHHHccccccccccccccEEEcccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccEEEEEEEEEccccEEEEEccccEEHHcHHHHccEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccEEEEEEccEEEEcccEEEEEEEEEEcccccHccccccccccccccccccccHHHHHHHHHHHccccEEEEEEEcccccEEEEEcccHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mysevstfdqdeeAYVCIYssrnsdtilfhhqggvdigdvdakalkleipvgqtgvteEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEinplvvtndTIYILDLAAKLDSTADFICraqwgnidypppfgrdaypeeayiadldsksgasLKLTILNKKGRIWTMVAGGGASVVYSDTicdlggaselanygeysgapseqqTYEYAKTILSLMTqekhpqgk
Flexible Loop (DISEMBL)
mysevstfdqdeEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIpvgqtgvteeqvtSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIAdldsksgaSLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK
Low Complexity Region (SEG)
MYSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK
Disordered region (IsUnstruct)
************EAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEY*********YEYAKTIL************
Disordered Region (DISOPRED)
MYSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEE*YIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMT*E******
Disordered Region (DISEMBL)
*********QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLM*********
Disordered Region (DISPRO)
*YSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q2TCH3	1101	ATP-citrate synthase OS=O	N/A	N/A	0.956	0.201	0.713	1e-94
Q32PF2	1091	ATP-citrate synthase OS=B	yes	N/A	0.956	0.203	0.708	3e-94
Q91V92	1091	ATP-citrate synthase OS=M	yes	N/A	0.956	0.203	0.713	3e-94
P53396	1101	ATP-citrate synthase OS=H	yes	N/A	0.956	0.201	0.708	7e-94
P16638	1100	ATP-citrate synthase OS=R	yes	N/A	0.956	0.201	0.708	2e-93
P53585	1106	Probable ATP-citrate synt	no	N/A	0.943	0.198	0.552	2e-70
O13907	492	Probable ATP-citrate synt	yes	N/A	0.956	0.451	0.488	6e-57
Q2QNG7	423	ATP-citrate synthase alph	yes	N/A	0.926	0.508	0.422	1e-46
Q9SGY2	423	ATP-citrate synthase alph	yes	N/A	0.943	0.517	0.421	1e-46
Q2QZ86	423	ATP-citrate synthase alph	no	N/A	0.926	0.508	0.422	2e-46

>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1

 Score =  345 bits (885), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 159/223 (71%), Positives = 192/223 (86%), Gaps = 1/223 (0%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q+EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct: 115 QEEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVAVDEK-LNPEDIKKHLLVHA 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +YILDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.
Ovis aries (taxid: 9940)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8

>sp|Q32PF2|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1

 Score =  344 bits (883), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 192/223 (86%), Gaps = 1/223 (0%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q+EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct: 115 QEEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1

 Score =  344 bits (883), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 159/223 (71%), Positives = 192/223 (86%), Gaps = 1/223 (0%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNTEDIKRHLLVHA 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +YILDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP+GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGK 336

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3

 Score =  343 bits (879), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 191/223 (85%), Gaps = 1/223 (0%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1

 Score =  342 bits (876), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 190/223 (85%), Gaps = 1/223 (0%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q EE YVCIY++R  D +LFHH+GGVD+GDVD KA KL + V +  +  E +   LL++ 
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDTKAQKLLVGVDEK-LNAEDIKRHLLVHA 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +YILDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 132/239 (55%), Positives = 176/239 (73%), Gaps = 20/239 (8%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPV--GQTGVT--EEQVTSKL 65
           + +E Y+ IYS R  D I+F+ QGGVDIGDV+ KA  + +PV   +  +T  +E++T+ L
Sbjct: 114 EKDEMYIAIYSERFRDVIMFYEQGGVDIGDVEEKARTVSVPVQLNENAMTPSDEELTTLL 173

Query: 66  LINVAPAKKA-MVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFI 124
                P K + +V +FV  LY  Y +L+FTYLEINP V+ N+ I++LDLAA+LD TA+F+
Sbjct: 174 ----GPLKDSDIVRRFVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAARLDETANFL 229

Query: 125 CRAQW----------GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTM 174
           C  +W           ++++P PFGRD   EE YI+++D+K+GASLKLTILN+KGR+WTM
Sbjct: 230 CADKWKSRLTPYGGPNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTM 289

Query: 175 VAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQ-EKHPQGK 232
           VAGGGASVV++DT+CDLGGASELANYGEYSG PSE QTYEYAKT+LS+MT+    P GK
Sbjct: 290 VAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTEGTPRPDGK 348

ATP-citrate synthase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|O13907|ACL2_SCHPO Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22A12.16 PE=1 SV=1

 Score =  220 bits (561), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 124/254 (48%), Positives = 159/254 (62%), Gaps = 32/254 (12%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGV-TEEQVTSKLLINV 69
           + E Y+ I S R  D ILF ++GGVD+GDVDAKA KL +PV  +   +   + S LL ++
Sbjct: 144 NTEYYININSVREGDWILFCNEGGVDVGDVDAKARKLLVPVRLSEFPSRATIASTLLSDI 203

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT----IYILDLAAKLDSTADFIC 125
              +   +  F+  LY++YV+  FTYLEINPLVV        ++ LDLAAKLD TA+F C
Sbjct: 204 PVEQHESLVDFIIRLYSVYVDCQFTYLEINPLVVIPTAKGADVFYLDLAAKLDQTAEFEC 263

Query: 126 RAQWG--------------------NID------YPPPFGRDAYPEEAYIADLDSKSGAS 159
            A+W                     N D      +P PFGR+   EEAY+  LD+K+GAS
Sbjct: 264 GAKWAVARAPESLGIKTSGEESGAINADHGPPMVFPAPFGRELSKEEAYVQGLDAKTGAS 323

Query: 160 LKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTI 219
           LKLTILN +GR+W +VAGGGASVVY+D +   G A ELANYGEYSGAP++ QTYEYAKT+
Sbjct: 324 LKLTILNAEGRVWNLVAGGGASVVYADAVAVNGAADELANYGEYSGAPTDGQTYEYAKTV 383

Query: 220 LSLMTQ-EKHPQGK 232
           L LMT+ E    GK
Sbjct: 384 LDLMTRGEPRADGK 397

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA. Has a central role in de novo lipid synthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|Q2QNG7|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/227 (42%), Positives = 141/227 (62%), Gaps = 12/227 (5%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVT----SKL 65
            D+E Y+ I S R   TI F   GG++I +   K   + +P      TE+ +T    + L
Sbjct: 113 HDQEYYLSIVSERLGSTISFSECGGIEIEENWDKVKTVFLP------TEKAMTPDACAPL 166

Query: 66  LINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFIC 125
           +  +    +  +  F+  +Y+++ +L F++LE+NP  + N   Y LD+  +LD TA F  
Sbjct: 167 IATLPLEVRTKIGDFIRGVYSVFQDLDFSFLEMNPFTMVNGEPYPLDMRGELDDTAAFKN 226

Query: 126 RAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYS 185
             +WGNI +P PFGR   P E++I +LD K+ +SLK T+LN KGRIWTMVAGGGASV+Y+
Sbjct: 227 FKKWGNIQFPLPFGRVLSPSESFIHELDEKTSSSLKFTVLNPKGRIWTMVAGGGASVIYA 286

Query: 186 DTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DT+ DLG ASEL NY EYSGAP+E++  +YA+ +L   T +  P G+
Sbjct: 287 DTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATAD--PDGR 331

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/223 (42%), Positives = 140/223 (62%), Gaps = 4/223 (1%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
            +EE Y+ + S R   +I F   GG++I +   K   + +P G +   E  + + L+  +
Sbjct: 113 HNEEYYLNVVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTGASLTPE--ICAPLVATL 170

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
               KA + +F+  ++ ++ +L FT+LE+NP  + + + Y LD+  +LD TA F    +W
Sbjct: 171 PLEIKAEIEEFIKVIFTLFQDLDFTFLEMNPFTLVDGSPYPLDMRGELDDTAAFKNFKKW 230

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++P PFGR   P E++I  LD K+ ASLK T+LN KGRIWTMVAGGGASV+Y+DT+ 
Sbjct: 231 GDIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVG 290

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLG ASEL NY EYSGAP E +  +YA+ ++   T   +P GK
Sbjct: 291 DLGYASELGNYAEYSGAPKEDEVLQYARVVIDCATA--NPDGK 331

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/227 (42%), Positives = 139/227 (61%), Gaps = 12/227 (5%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVT----SKL 65
            D+E Y+ I S R   TI F   GG++I +   K   + +P      TE+ +T    + L
Sbjct: 113 HDQEYYLSIVSERLGSTISFSECGGIEIEENWDKVKTIFLP------TEKPMTPDACAPL 166

Query: 66  LINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFIC 125
           +  +    +  +  F+  ++ ++ +L F++LE+NP  + N   Y LD+  +LD TA F  
Sbjct: 167 IATLPLEARGKIGDFIKGVFAVFQDLDFSFLEMNPFTIVNGEPYPLDMRGELDDTAAFKN 226

Query: 126 RAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYS 185
             +WGNI++P PFGR     E +I DLD K+ ASLK T+LN KGRIWTMVAGGGASV+Y+
Sbjct: 227 FKKWGNIEFPLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYA 286

Query: 186 DTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DT+ DLG ASEL NY EYSGAP+E++  +YA+ +L   T +  P G+
Sbjct: 287 DTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATAD--PDGR 331

ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
237874159	1092	ATP citrate lyase [Acyrthosiphon pisum]	0.952	0.202	0.837	1e-108
350398404	1086	PREDICTED: ATP-citrate synthase-like [Bo	0.961	0.205	0.807	1e-104
383865717	1086	PREDICTED: ATP-citrate synthase-like [Me	0.961	0.205	0.798	1e-104
156547848	1087	PREDICTED: ATP-citrate synthase-like iso	0.956	0.204	0.806	1e-103
189238364	1092	PREDICTED: similar to ATP-citrate syntha	0.952	0.202	0.810	1e-103
270008566	1089	hypothetical protein TcasGA2_TC015096 [T	0.952	0.202	0.810	1e-103
340725045	1086	PREDICTED: ATP-citrate synthase-like [Bo	0.961	0.205	0.798	1e-102
119114534	1082	AGAP010156-PA [Anopheles gambiae str. PE	0.952	0.204	0.807	1e-101
157105391	1127	ATP-citrate synthase [Aedes aegypti] gi|	0.952	0.196	0.802	1e-100
307181417	819	ATP-citrate synthase [Camponotus florida	0.956	0.271	0.783	1e-100

>gi|237874159|ref|NP_001153852.1| ATP citrate lyase [Acyrthosiphon pisum]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/222 (83%), Positives = 205/222 (92%), Gaps = 1/222 (0%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           +EEAYVCIYS R++DTILFHH+GGVDIGDVDAKALKLE+P+GQ+ VTEEQ+  KLL  V+
Sbjct: 115 EEEAYVCIYSHRHADTILFHHEGGVDIGDVDAKALKLEVPIGQS-VTEEQILEKLLTKVS 173

Query: 71  PAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
           PAK+  +A F+ ALY MYVNLYFTYLEINPLVVT+  IYILDLAAK+DSTADFICRA WG
Sbjct: 174 PAKQKTIATFIVALYKMYVNLYFTYLEINPLVVTDSAIYILDLAAKIDSTADFICRASWG 233

Query: 131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
            I+YPPPFGRDA+PEEAYIADLD+KSGASLKLTILNKKGRIWTMVAGGGASV+Y+DTICD
Sbjct: 234 EIEYPPPFGRDAFPEEAYIADLDAKSGASLKLTILNKKGRIWTMVAGGGASVIYADTICD 293

Query: 191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
            GGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHP GK
Sbjct: 294 YGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPDGK 335

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398404|ref|XP_003485182.1| PREDICTED: ATP-citrate synthase-like [Bombus impatiens]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/223 (80%), Positives = 200/223 (89%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q+EEAYVCIYS RN+DTILFHH+GGVDIGDVDAKALKL++PVG+       + +KLLI+V
Sbjct: 114 QEEEAYVCIYSHRNADTILFHHEGGVDIGDVDAKALKLDVPVGEEAPDRSTIINKLLIHV 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
           A  KK ++ KFV +LY +YVNLYFTYLEINPLVVT + IYILDLAAKLD+TADFICR  W
Sbjct: 174 ADDKKEVIGKFVESLYKLYVNLYFTYLEINPLVVTKNGIYILDLAAKLDTTADFICRPDW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+IDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILN  GRIWTMVAGGGASV+YSDTIC
Sbjct: 234 GDIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNPAGRIWTMVAGGGASVIYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLG A+ELANYGEYSGAPSEQQTYEYAKTILSLMT+EK P+GK
Sbjct: 294 DLGAANELANYGEYSGAPSEQQTYEYAKTILSLMTKEKRPEGK 336

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865717|ref|XP_003708319.1| PREDICTED: ATP-citrate synthase-like [Megachile rotundata]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/223 (79%), Positives = 200/223 (89%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q+EEAYVCIYS R +DTILFHH+GGVDIGDVDAKALKL++PVG+   ++  +T KLL+NV
Sbjct: 114 QEEEAYVCIYSHRRADTILFHHEGGVDIGDVDAKALKLDVPVGEEAPSQAVITEKLLVNV 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
           A  KK ++AKF+  LYN+YVNLYFTYLEINPLVVT + IYILDLAAKLD+TADF+CR  W
Sbjct: 174 ADDKKEVIAKFIDTLYNLYVNLYFTYLEINPLVVTKNGIYILDLAAKLDTTADFVCRPDW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G IDYPPPFGRDAYPEEAYIADLD+KSGASLKLTILN  GRIWTMVAGGGASV+YSDTIC
Sbjct: 234 GEIDYPPPFGRDAYPEEAYIADLDAKSGASLKLTILNPAGRIWTMVAGGGASVIYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLG A+ELANYGEYSGAPSEQQTYEYAKTILSLMT+EK  +GK
Sbjct: 294 DLGAANELANYGEYSGAPSEQQTYEYAKTILSLMTKEKRKEGK 336

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547848|ref|XP_001604320.1| PREDICTED: ATP-citrate synthase-like isoform 1 [Nasonia vitripennis] gi|345485396|ref|XP_003425261.1| PREDICTED: ATP-citrate synthase-like isoform 2 [Nasonia vitripennis]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/222 (80%), Positives = 199/222 (89%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           +EEAYVCIYS R +DTILFHH+GGVDIGDVDAKALKLE+PV      E  +TS+LL +VA
Sbjct: 115 EEEAYVCIYSHRTADTILFHHEGGVDIGDVDAKALKLEVPVDSDIPDESTITSRLLAHVA 174

Query: 71  PAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
             KK ++AKF+ +LY +YV+LYFTYLEINPLVVT+D+IYILDLAAKLD+TADFICR  WG
Sbjct: 175 NDKKPVIAKFIQSLYKLYVDLYFTYLEINPLVVTDDSIYILDLAAKLDTTADFICRPDWG 234

Query: 131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
            IDYPPPFGRDAYPEEAYIADLD+KSGASLKLTILN  GRIWTMVAGGGASV+YSDTICD
Sbjct: 235 EIDYPPPFGRDAYPEEAYIADLDAKSGASLKLTILNPSGRIWTMVAGGGASVIYSDTICD 294

Query: 191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           LGGASELANYGEYSGAPSEQQTYEYAKTIL LMT+E+HP GK
Sbjct: 295 LGGASELANYGEYSGAPSEQQTYEYAKTILGLMTKERHPDGK 336

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238364|ref|XP_001808341.1| PREDICTED: similar to ATP-citrate synthase [Tribolium castaneum]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/222 (81%), Positives = 199/222 (89%), Gaps = 1/222 (0%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           +EE YVCIYS R+ DTILF+HQGGVDIGDVD+KA+KLE+PVG++ V E+++T  LL  V 
Sbjct: 115 NEEVYVCIYSHRHGDTILFYHQGGVDIGDVDSKAVKLEVPVGES-VDEKRITEALLSQVD 173

Query: 71  PAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
            +KKAM+A FV  LY +YV+LYFTYLEINPLVVT   IY+LDLAAKLD+TADFIC+  WG
Sbjct: 174 ASKKAMIANFVNNLYKLYVDLYFTYLEINPLVVTQKEIYVLDLAAKLDATADFICKPMWG 233

Query: 131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
            IDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNK GRIWTMVAGGGASV+YSDTICD
Sbjct: 234 EIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKSGRIWTMVAGGGASVIYSDTICD 293

Query: 191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           LGGA ELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK
Sbjct: 294 LGGAKELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 335

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008566|gb|EFA05014.1| hypothetical protein TcasGA2_TC015096 [Tribolium castaneum]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/222 (81%), Positives = 199/222 (89%), Gaps = 1/222 (0%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           +EE YVCIYS R+ DTILF+HQGGVDIGDVD+KA+KLE+PVG++ V E+++T  LL  V 
Sbjct: 115 NEEVYVCIYSHRHGDTILFYHQGGVDIGDVDSKAVKLEVPVGES-VDEKRITEALLSQVD 173

Query: 71  PAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
            +KKAM+A FV  LY +YV+LYFTYLEINPLVVT   IY+LDLAAKLD+TADFIC+  WG
Sbjct: 174 ASKKAMIANFVNNLYKLYVDLYFTYLEINPLVVTQKEIYVLDLAAKLDATADFICKPMWG 233

Query: 131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
            IDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNK GRIWTMVAGGGASV+YSDTICD
Sbjct: 234 EIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKSGRIWTMVAGGGASVIYSDTICD 293

Query: 191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           LGGA ELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK
Sbjct: 294 LGGAKELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 335

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725045|ref|XP_003400885.1| PREDICTED: ATP-citrate synthase-like [Bombus terrestris]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/223 (79%), Positives = 198/223 (88%)

Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q+EEAYVCIYS RN+DTILFHH+GGVDIGDVDAKALKL++ VG+       + +KLLI+V
Sbjct: 114 QEEEAYVCIYSHRNADTILFHHEGGVDIGDVDAKALKLDVLVGEEAPDRSTIINKLLIHV 173

Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
           A  KK ++ KFV +LY +YVNLYFTYLEINPLVVT + IYILDLAAKLD+TADFICR  W
Sbjct: 174 ADDKKEVIGKFVESLYKLYVNLYFTYLEINPLVVTKNGIYILDLAAKLDTTADFICRPDW 233

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+IDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILN  GRIWTMVAGGGASV+YSDTIC
Sbjct: 234 GDIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNPAGRIWTMVAGGGASVIYSDTIC 293

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLG A+ELANYGEYSGAPSEQQTYEYAKTILSLMT+EK  +GK
Sbjct: 294 DLGAANELANYGEYSGAPSEQQTYEYAKTILSLMTKEKRQEGK 336

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119114534|ref|XP_319323.3| AGAP010156-PA [Anopheles gambiae str. PEST] gi|116118462|gb|EAA13829.3| AGAP010156-PA [Anopheles gambiae str. PEST]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/223 (80%), Positives = 198/223 (88%), Gaps = 2/223 (0%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           +EEAYVCIYS R +DTILF+HQGGVDIGDVDAKALKLE+PVG T VT  ++   LL  ++
Sbjct: 115 NEEAYVCIYSHRTADTILFYHQGGVDIGDVDAKALKLEVPVG-TDVTMAEIEKVLLTEIS 173

Query: 71  PAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
            AKK  VA FV  LY MYV+LYFTYLEINPLVVT+D+IYILDLAAK+D+TADFICR +WG
Sbjct: 174 SAKKKRVANFVYNLYKMYVDLYFTYLEINPLVVTDDSIYILDLAAKVDATADFICRPKWG 233

Query: 131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
            IDYPPPFGRDA+PEEAYIADLD+KSGASLKLTILN+ GRIWTMVAGGGASV+YSDTICD
Sbjct: 234 EIDYPPPFGRDAFPEEAYIADLDAKSGASLKLTILNRNGRIWTMVAGGGASVIYSDTICD 293

Query: 191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQE-KHPQGK 232
           LGGASELANYGEYSGAPSEQQTYEYAKTILSLMT   KHP GK
Sbjct: 294 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTSSPKHPDGK 336

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105391|ref|XP_001648848.1| ATP-citrate synthase [Aedes aegypti] gi|108880117|gb|EAT44342.1| AAEL004297-PA [Aedes aegypti]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/223 (80%), Positives = 197/223 (88%), Gaps = 2/223 (0%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           +EEAYVCIYS R +DTILF+HQGGVDIGDVD+KALKL++PVGQ  VT E +   LL  VA
Sbjct: 115 NEEAYVCIYSHRTADTILFYHQGGVDIGDVDSKALKLDVPVGQD-VTLESIEKVLLTEVA 173

Query: 71  PAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
            AKK  VA F+  LY +YV+LYFTYLEINPLVVT  +IYILDLAAK+D+TADF+CR +WG
Sbjct: 174 AAKKKRVASFIYNLYKLYVDLYFTYLEINPLVVTESSIYILDLAAKIDATADFVCRPKWG 233

Query: 131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
            IDYPPPFGRDAYPEEAYIADLD+KSGASLKLTILN+ GRIWTMVAGGGASV+YSDTICD
Sbjct: 234 EIDYPPPFGRDAYPEEAYIADLDAKSGASLKLTILNRNGRIWTMVAGGGASVIYSDTICD 293

Query: 191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQE-KHPQGK 232
           LGGASELANYGEYSGAPSEQQTYEYAKTILSLMT   KHPQGK
Sbjct: 294 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTSSPKHPQGK 336

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181417|gb|EFN69012.1| ATP-citrate synthase [Camponotus floridanus]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/222 (78%), Positives = 193/222 (86%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           +EE Y+CIYS R +DTILFHHQGGVDIGDVDAKALKL+IPVG        + +KLL+NVA
Sbjct: 115 EEEVYICIYSHRKADTILFHHQGGVDIGDVDAKALKLDIPVGGELPDRSILINKLLVNVA 174

Query: 71  PAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
             KK M+A+F+ +LY +YVNLYFTY+EINPLVVT+  IYILDLAAKLD+TADFIC+  WG
Sbjct: 175 DDKKVMIAEFIESLYKLYVNLYFTYMEINPLVVTDSAIYILDLAAKLDTTADFICKPDWG 234

Query: 131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
            IDYPPPFGRDAYPEEAYIADLD+KSGASLKLTILN  GRIWTMVAGGGASV+YSDTICD
Sbjct: 235 EIDYPPPFGRDAYPEEAYIADLDAKSGASLKLTILNPNGRIWTMVAGGGASVIYSDTICD 294

Query: 191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           LG A ELANYGEYSGAPSEQQTYEYAKTILSLMT+ KH  GK
Sbjct: 295 LGAADELANYGEYSGAPSEQQTYEYAKTILSLMTKTKHSNGK 336

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0020236	1112	ATPCL "ATP citrate lyase" [Dro	0.948	0.197	0.793	7.3e-91
UNIPROTKB|Q32PF2	1091	ACLY "ATP-citrate synthase" [B	0.956	0.203	0.708	4.7e-87
UNIPROTKB|F1S0N2	524	ACLY "Uncharacterized protein"	0.956	0.423	0.704	6e-87
MGI|MGI:103251	1091	Acly "ATP citrate lyase" [Mus	0.956	0.203	0.717	7.7e-87
ZFIN|ZDB-GENE-031113-1	1092	aclya "ATP citrate lyase a" [D	0.952	0.202	0.705	9.9e-87
UNIPROTKB|P53396	1101	ACLY "ATP-citrate synthase" [H	0.956	0.201	0.708	1.3e-86
UNIPROTKB|F1Q3V2	1139	ACLY "Uncharacterized protein"	0.956	0.194	0.708	1.6e-86
UNIPROTKB|J9NST7	1091	ACLY "Uncharacterized protein"	0.956	0.203	0.708	1.6e-86
RGD|2018	1100	Acly "ATP citrate lyase" [Ratt	0.956	0.201	0.708	3.3e-86
UNIPROTKB|F1LQS4	1100	Acly "ATP-citrate synthase" [R	0.956	0.201	0.708	3.3e-86

FB|FBgn0020236 ATPCL "ATP citrate lyase" [Drosophila melanogaster (taxid:7227)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 177/223 (79%), Positives = 194/223 (86%)

Query:    12 EEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAP 71
             EE YVCIYS R +DTILF+HQGGVDIGDVDAKA+KL++PV  + ++   V SKLL  V  
Sbjct:   117 EEMYVCIYSHRAADTILFYHQGGVDIGDVDAKAVKLDVPVNSS-LSLADVKSKLLKEVKD 175

Query:    72 A-KKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWG 130
             A  K  +AKFV+ALY  YV+LYFTYLEINPLVVT D +YILDLAAKLDSTADFICR +WG
Sbjct:   176 AGTKERIAKFVSALYTTYVDLYFTYLEINPLVVTADNLYILDLAAKLDSTADFICRPKWG 235

Query:   131 NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICD 190
              IDYPPPFGRDAYPEEAYIADLD+KSGASLKLTILN+ GRIWTMVAGGGASV+YSDTICD
Sbjct:   236 EIDYPPPFGRDAYPEEAYIADLDAKSGASLKLTILNRNGRIWTMVAGGGASVIYSDTICD 295

Query:   191 LGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQE-KHPQGK 232
             LGGASELANYGEYSGAPSEQQTYEYAKTIL+LMT   KHP GK
Sbjct:   296 LGGASELANYGEYSGAPSEQQTYEYAKTILNLMTSSPKHPDGK 338

GO:0006101 "citrate metabolic process" evidence=ISS

GO:0003878 "ATP citrate synthase activity" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|Q32PF2 ACLY "ATP-citrate synthase" [Bos taurus (taxid:9913)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 158/223 (70%), Positives = 192/223 (86%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q+EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct:   115 QEEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct:   174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct:   294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

UNIPROTKB|F1S0N2 ACLY "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 157/223 (70%), Positives = 194/223 (86%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q+EE YVCIY++R+ D +LFHH+GGVD+GDVDAKA +L + V +  +  E +   LL++ 
Sbjct:   115 QEEEFYVCIYAARDGDHVLFHHEGGVDVGDVDAKAQRLLVGVDEK-LNPEAIKKHLLVHA 173

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct:   174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP+GK
Sbjct:   294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGK 336

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:103251 Acly "ATP citrate lyase" [Mus musculus (taxid:10090)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 160/223 (71%), Positives = 193/223 (86%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +   TE+ +   LL++ 
Sbjct:   115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNTED-IKRHLLVHA 173

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +YILDLAAK+D+TAD+IC+ +W
Sbjct:   174 PEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKW 233

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP+GK
Sbjct:   294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGK 336

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=ISO;TAS

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=ISO

GO:0006085 "acetyl-CoA biosynthetic process" evidence=TAS

GO:0006101 "citrate metabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

ZFIN|ZDB-GENE-031113-1 aclya "ATP citrate lyase a" [Danio rerio (taxid:7955)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/224 (70%), Positives = 199/224 (88%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q+EE YVCIY++R  D +LFHH+GGVD+GDVD+KALKL + V +  ++ + V S+LL + 
Sbjct:   115 QEEEFYVCIYATREGDYMLFHHEGGVDVGDVDSKALKLLVGVDEK-ISADTVKSQLLTH- 172

Query:    70 APA-KKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQ 128
             APA KK +++ F+  L+N+Y +LYFTYLEINPLVVT D +Y+LD+AAK+D+TAD++C+A+
Sbjct:   173 APADKKEILSSFLVGLFNLYEDLYFTYLEINPLVVTKDGVYVLDMAAKIDATADYLCKAK 232

Query:   129 WGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTI 188
             WG++++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN +GRIWTMVAGGGASVVYSDTI
Sbjct:   233 WGDVEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPRGRIWTMVAGGGASVVYSDTI 292

Query:   189 CDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             CDLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct:   293 CDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|P53396 ACLY "ATP-citrate synthase" [Homo sapiens (taxid:9606)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 158/223 (70%), Positives = 191/223 (85%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct:   115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct:   174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct:   294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006101 "citrate metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=TAS

GO:0009346 "citrate lyase complex" evidence=TAS

GO:0015936 "coenzyme A metabolic process" evidence=TAS

GO:0003878 "ATP citrate synthase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0031325 "positive regulation of cellular metabolic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1Q3V2 ACLY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 158/223 (70%), Positives = 191/223 (85%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct:   153 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKK-LNPEDIKKHLLVHA 211

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct:   212 PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYICKVKW 271

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   272 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 331

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct:   332 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 374

GO:0048037 "cofactor binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

UNIPROTKB|J9NST7 ACLY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 158/223 (70%), Positives = 191/223 (85%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct:   115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKK-LNPEDIKKHLLVHA 173

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct:   174 PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYICKVKW 233

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct:   294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

GO:0048037 "cofactor binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

RGD|2018 Acly "ATP citrate lyase" [Rattus norvegicus (taxid:10116)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 158/223 (70%), Positives = 190/223 (85%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q EE YVCIY++R  D +LFHH+GGVD+GDVD KA KL + V +  +  E +   LL++ 
Sbjct:   115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDTKAQKLLVGVDEK-LNAEDIKRHLLVHA 173

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +YILDLAAK+D+TAD+IC+ +W
Sbjct:   174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKW 233

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct:   294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

GO:0003878 "ATP citrate synthase activity" evidence=IDA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006084 "acetyl-CoA metabolic process" evidence=IDA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=NAS

GO:0006101 "citrate metabolic process" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEP

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1LQS4 Acly "ATP-citrate synthase" [Rattus norvegicus (taxid:10116)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 158/223 (70%), Positives = 190/223 (85%)

Query:    10 QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
             Q EE YVCIY++R  D +LFHH+GGVD+GDVD KA KL + V +  +  E +   LL++ 
Sbjct:   115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDTKAQKLLVGVDEK-LNAEDIKRHLLVHA 173

Query:    70 APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
                KK ++A F++ L+N Y +LYFTYLEINPLVVT D +YILDLAAK+D+TAD+IC+ +W
Sbjct:   174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKW 233

Query:   130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
             G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct:   234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293

Query:   190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
             DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct:   294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32PF2	ACLY_BOVIN	2, ., 3, ., 3, ., 8	0.7085	0.9568	0.2034	yes	N/A
Q91V92	ACLY_MOUSE	2, ., 3, ., 3, ., 8	0.7130	0.9568	0.2034	yes	N/A
P16638	ACLY_RAT	2, ., 3, ., 3, ., 8	0.7085	0.9568	0.2018	yes	N/A
P53396	ACLY_HUMAN	2, ., 3, ., 3, ., 8	0.7085	0.9568	0.2016	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
PLN02235	423	PLN02235, PLN02235, ATP citrate (pro-S)-lyase	1e-65
COG0045	387	COG0045, SucC, Succinyl-CoA synthetase, beta subun	2e-28
PRK00696	388	PRK00696, sucC, succinyl-CoA synthetase subunit be	2e-08
TIGR01016	386	TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be	9e-07
PRK14046	392	PRK14046, PRK14046, malate--CoA ligase subunit bet	3e-06
pfam08442	202	pfam08442, ATP-grasp_2, ATP-grasp domain	1e-04
PLN00124	422	PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi	1e-04

>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase

 Score =  208 bits (532), Expect = 1e-65
 Identities = 95/223 (42%), Positives = 139/223 (62%), Gaps = 6/223 (2%)

Query: 11  DEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA 70
           D+E Y+ I S R   +I F   GG++I +   K   + +P     +T E      LI   
Sbjct: 114 DQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAP-LTSEICAP--LIATL 170

Query: 71  PAK-KAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
           P + +  + +F+  ++ ++ +L FT+LE+NP  + +   Y LD+  +LD TA F    +W
Sbjct: 171 PLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKW 230

Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           GNI++P PFGR   P E++I  LD K+ ASLK T+LN KGRIWTMVAGGGASV+Y+DT+ 
Sbjct: 231 GNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVG 290

Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLG ASEL NY EYSGAP+E++  +YA+ ++   T   +P G+
Sbjct: 291 DLGYASELGNYAEYSGAPNEEEVLQYARVVIDCAT--ANPDGR 331

Length = 423

>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

 Score =  109 bits (276), Expect = 2e-28
 Identities = 58/220 (26%), Positives = 87/220 (39%), Gaps = 23/220 (10%)

Query: 10  QDEEAYVCIYSSRNSDTILF--HHQGGVDIGDVDAKALKLEIPVG---QTGVTEEQVTSK 64
             +E Y+ I   R+S   +     +GG+DI +V  K  +  + V     TG+   Q    
Sbjct: 102 IKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQAREL 161

Query: 65  LL-INVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND--TIYILDLAAKLDSTA 121
              + +       VA  +  LY ++V    T +EINPLVVT D   +  LD    LD  A
Sbjct: 162 AFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNA 221

Query: 122 DFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGAS 181
            F             P   +   E          SG  L    L+  G I  +V G G +
Sbjct: 222 LF-----------RHPDLAELRDESEEDPREAEASGYGLNYVELD--GNIGCIVNGAGLA 268

Query: 182 VVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILS 221
           +   D +   GG  + AN+ +  G  + ++  E  K ILS
Sbjct: 269 MATMDIVKLYGG--KPANFLDVGGGATAERVKEAFKLILS 306

Length = 387

>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 27/128 (21%)

Query: 7   TFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDA----KALKLEI-PVGQTGVTEEQ- 60
             D+     V + S+          +GG+DI +V      K  K+ I P+  TG+   Q 
Sbjct: 113 VLDRATRRVVFMAST----------EGGMDIEEVAEETPEKIHKVAIDPL--TGLQPFQA 160

Query: 61  --VTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAK- 116
             +  KL +     K+   AK +  LY  +V    + +EINPLVVT D  +  LD  AK 
Sbjct: 161 REIAFKLGLPGEQVKQF--AKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALD--AKI 216

Query: 117 -LDSTADF 123
             D  A F
Sbjct: 217 NFDDNALF 224

Length = 388

>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 32/225 (14%)

Query: 9   DQDEEAYVCIYSSRNSD--TILFHHQGGVDIGDVDAKA----LKLEIPV--GQTGVTEEQ 60
           D D+E Y+ I   R++    I+   +GGVDI +V  K+    +K  I    G       +
Sbjct: 103 DIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQARE 162

Query: 61  VTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLDS 119
           +  KL +     K+  VA  +  LY +++    + +EINPLV+T D  +  LD    +D 
Sbjct: 163 IAKKLGLEGELVKQ--VADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDD 220

Query: 120 TADFICRAQWGNIDYPPPFGRDAYPEE---AYIADLDSKSGASLKLTILNKKGRIWTMVA 176
            A F         DY     R+   ++    Y+A LD               G I  MV 
Sbjct: 221 NALFRHPDLEEMRDYSQEDPREVLAKQWGLNYVA-LD---------------GNIGCMVN 264

Query: 177 GGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILS 221
           G G ++   D I   GG  E AN+ +  G  S ++  E  K +LS
Sbjct: 265 GAGLAMATMDIIKLYGG--EPANFLDVGGGASAERVREALKLVLS 307

This model is designated subfamily because it does not discriminate the ADP-forming enzyme ((EC 6.2.1.5) from the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half is described by the CoA-ligases model (pfam00549). The C-terminal half is described by the ATP-grasp model (pfam02222). This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G [Energy metabolism, TCA cycle]. Length = 386

>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 39/236 (16%)

Query: 1   MYSEVSTFDQDEEAYVCIYSSRNSDTILF--HHQGGVDIGDVDAK---ALK---LEIPVG 52
           +Y E +    + E Y+     R S+ +      +GG++I ++ AK   A+    +E  VG
Sbjct: 96  VYVETAD-PIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVG 154

Query: 53  QTGVTEEQVTSKLLINVAPAKKAMVAKFVTAL---YNMYVNLYFTYLEINPLVVT-NDTI 108
                  ++   L +++       V++ V  +   Y  + +L  T LEINPLVVT +D +
Sbjct: 155 LQQFQAREIAFGLGLDIK-----QVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRV 209

Query: 109 YILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAY---PEEAYIADLDSKSGASLKLTIL 165
             LD     D  A F  R     +       RD     P EA  A+          L+ +
Sbjct: 210 LALDAKMSFDDNALFR-RPNIAEM-------RDPSQEDPREAQAAEHG--------LSYV 253

Query: 166 NKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILS 221
              G I  +V G G ++   D I   GG  E AN+ +  G  S ++  +  + +LS
Sbjct: 254 GLDGDIGCIVNGAGLAMATMDMIKLAGG--EPANFLDVGGGASPERVAKAFRLVLS 307

Length = 392

>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 9   DQDEEAYVCIYSSRNSDTILF--HHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQ-- 60
           D   E Y+ I   R S   +     +GGVDI +V AK      K+ I    TG+T  Q  
Sbjct: 102 DIAREYYLSIVLDRASRGPVLIASTEGGVDIEEVAAKNPEAIHKVPIDP-ATGLTPYQAR 160

Query: 61  -VTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVV 103
            +  KL +     K+A  A  +  LY ++V    T +EINPLV 
Sbjct: 161 EIAFKLGLEGELVKQA--ADIIKKLYKLFVERDATLVEINPLVE 202

Length = 202

>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 64/220 (29%), Positives = 86/220 (39%), Gaps = 30/220 (13%)

Query: 13  EAYVCIYSSRNSD--TILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQ---VTS 63
           E Y  I   R S    I+   +GG  I D+  K     +K+ I +   G+T+E    V  
Sbjct: 142 EMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPIDI-FKGITDEDAAKVVD 200

Query: 64  KLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYIL-DLAAKLDSTAD 122
            L   VA    A   + V  LY ++     T +EINPL  T D   +  D     D  A 
Sbjct: 201 GLAPKVADRNDA--IEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAA 258

Query: 123 FICRAQWGNIDYPPPFG-RDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGAS 181
           F  R +         F  RD   E     D    + A   L  +   G I  MV G G +
Sbjct: 259 F--RQK-------EIFALRDTSQE-----DPREVAAAKADLNYIGLDGEIGCMVNGAGLA 304

Query: 182 VVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILS 221
           +   D I   GG+   AN+ +  G  SEQQ  E  K + S
Sbjct: 305 MATMDIIKLHGGSP--ANFLDVGGNASEQQVVEAFKILTS 342

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PLN02235	423	ATP citrate (pro-S)-lyase	100.0
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	100.0
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	100.0
KOG1447|consensus	412		100.0
PRK14046	392	malate--CoA ligase subunit beta; Provisional	100.0
KOG2799|consensus	434		100.0
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	100.0
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	100.0
PF08442	202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	99.92
KOG1254|consensus	600		99.63
PF13549	222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	99.44
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	98.69
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.43

>PLN02235 ATP citrate (pro-S)-lyase

Probab=100.00  E-value=9e-67  Score=482.48  Aligned_cols=218  Identities=38%  Similarity=0.693  Sum_probs=198.8

Q ss_pred             cCccCCCCCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcChhHHHHHHHHHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFVT   82 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~~~~~~~l~~il~   82 (232)
                      +|+++  |++||||||++||+++.|++|++||||||+.++++.+++|++.. |+++++ +|.++..++.+..+++.+++.
T Consensus       108 Ee~v~--i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~-gl~~~~-~~~~~~~l~~~~~~~~~~~l~  183 (423)
T PLN02235        108 EPFVP--HDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEA-PLTSEI-CAPLIATLPLEIRGKIEEFIK  183 (423)
T ss_pred             EecCC--CcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCC-CCCHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence            34444  56999999999999777999999999999999999999999999 999999 899998898777899999999


Q ss_pred             HHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhh--hhhhcCCC
Q psy16949         83 ALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIAD--LDSKSGAS  159 (232)
Q Consensus        83 ~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~--~a~~~g~~  159 (232)
                      +||++|.++||+++|||||++ .+| ++|||||+.|||||+|||++.|..++||.+|+|+.+|+|..+..  ++++++  
T Consensus       184 ~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~--  260 (423)
T PLN02235        184 GVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSAS--  260 (423)
T ss_pred             HHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEcccCCCcccCHhHhhhhcccccccCCCCHHHHhhccchhhhccC--
Confidence            999999999999999999999 666 99999999999999999997799999999999999877644433  444454  


Q ss_pred             cCceE--EecCCeEEEEecCchhHHHHHHHHHHcC--CCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        160 LKLTI--LNKKGRIWTMVAGGGASVVYSDTICDLG--GASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       160 ~~l~y--i~l~G~Ig~~vnGaGlamat~D~i~~~G--g~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                        |+|  ++|+||||||||||||||+|||+|+++|  |  +||||||+||+||.++|+++|++||++|++|||+|+
T Consensus       261 --l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g--~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~  332 (423)
T PLN02235        261 --LKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRK  332 (423)
T ss_pred             --CceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCC--CCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcE
Confidence              777  9999999999999999999999999999  7  699999999999999999999999999999999986

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=1.5e-66  Score=471.57  Aligned_cols=201  Identities=28%  Similarity=0.390  Sum_probs=184.3

Q ss_pred             CCceEEEEEEEeCC--CCeEEEEcCCCCccccccccc----ceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHHHHH
Q psy16949         10 QDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVAKFV   81 (232)
Q Consensus        10 i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~~----~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~~il   81 (232)
                      +.+|||+||++||+  +|++++|++||||||++++++    .+.++++.. |+++|+ +|++++.+|  +..++++.+++
T Consensus       102 ~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~~-g~~~~~-aR~la~~lgl~~~~~~~~~~ii  179 (387)
T COG0045         102 IKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLT-GLRPYQ-ARELAFKLGLEGELVKQVADII  179 (387)
T ss_pred             ccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCcc-CCCHHH-HHHHHHHcCCCHHHHHHHHHHH
Confidence            44699999999999  799999999999999998754    567888888 999999 999999988  67899999999


Q ss_pred             HHHHHHHHhcccceeeeeeeeecCC-c-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCC
Q psy16949         82 TALYNMYVNLYFTYLEINPLVVTND-T-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGAS  159 (232)
Q Consensus        82 ~~Ly~lf~e~da~llEINPL~~t~~-g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~  159 (232)
                      .+||++|.++|++|+|||||++|.+ | ++|||||++|||||+||||+ +..+       ||.+ +|++.|..|++++  
T Consensus       180 ~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~-~~~~-------~d~~-~ed~~e~~a~~~~--  248 (387)
T COG0045         180 KKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPD-LAEL-------RDES-EEDPREAEASGYG--  248 (387)
T ss_pred             HHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcc-hhhh-------hccc-ccChhHHHhhhCC--
Confidence            9999999999999999999999985 3 99999999999999999996 4443       7777 5778999999998  


Q ss_pred             cCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        160 LKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       160 ~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                        |+|++||||||||||||||||+|||+|+.+||  +||||||+||+||.++|+++|++|    ++||++|+
T Consensus       249 --l~yV~LdG~IG~ivNGAGLaMaTmDii~~~Gg--~PANFLDvGGgA~~e~v~~a~~~i----l~d~~vk~  312 (387)
T COG0045         249 --LNYVELDGNIGCIVNGAGLAMATMDIVKLYGG--KPANFLDVGGGATAERVKEAFKLI----LSDPNVKA  312 (387)
T ss_pred             --CceEEecCcEEEEecChhHHHHHHHHHHHcCC--CCcceeecCCCCCHHHHHHHHHHH----hcCCCccE
Confidence              99999999999999999999999999999999  699999999999999999998775    68999875

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=100.00  E-value=7.2e-59  Score=433.09  Aligned_cols=201  Identities=29%  Similarity=0.396  Sum_probs=181.9

Q ss_pred             CCceEEEEEEEeCC--CCeEEEEcCCCCcccccccc----cceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHHHHH
Q psy16949         10 QDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVAKFV   81 (232)
Q Consensus        10 i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~----~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~~il   81 (232)
                      +.+|+|||++.||.  +|+|++|.+|||+||++++.    ..++++++.. ++++++ +++++..|+  +..++++.+++
T Consensus       139 ~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd~i~~~~id~~~-~l~~~~-a~~~~~~L~~~~~~~~~l~~ii  216 (422)
T PLN00124        139 LVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPIDIFK-GITDED-AAKVVDGLAPKVADRNDAIEQV  216 (422)
T ss_pred             CCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCchheeEEecCcCC-CCCHHH-HHHHHHHcCCCHHHHHHHHHHH
Confidence            57999999999996  89999999999999987654    5678888998 999999 899988888  56789999999


Q ss_pred             HHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCCc
Q psy16949         82 TALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASL  160 (232)
Q Consensus        82 ~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~  160 (232)
                      .+||++|.++|++++|||||++|++| ++|+|||+.+||||+|||++.|. +       |+.++ ++|.|.+|+++|   
T Consensus       217 ~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~DdnA~~R~~~~~~-~-------~~~~~-~~~~E~~a~~~~---  284 (422)
T PLN00124        217 KKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQKEIFA-L-------RDTSQ-EDPREVAAAKAD---  284 (422)
T ss_pred             HHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCCchhhcChhhhh-c-------cCccc-CChhHHHHhhCC---
Confidence            99999999999999999999999998 99999999999999999997553 2       56663 456778888887   


Q ss_pred             CceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        161 KLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       161 ~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                       ||||+|+||||||||||||||+|||+|+.+||  +||||||+||+||.++|+++|+++    ++||++|+
T Consensus       285 -l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg--~pANFlD~GG~a~~~~v~~a~~ii----~~d~~vk~  348 (422)
T PLN00124        285 -LNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--SPANFLDVGGNASEQQVVEAFKIL----TSDDKVKA  348 (422)
T ss_pred             -CceECCCCcEEEEecCchHHHHHHHHHHHcCC--CcceeeecCCCCCHHHHHHHHHHH----hcCCCCcE
Confidence             99999999999999999999999999999999  599999999999999999998865    56899874

>KOG1447|consensus

Probab=100.00  E-value=1.4e-57  Score=396.31  Aligned_cols=203  Identities=28%  Similarity=0.391  Sum_probs=186.0

Q ss_pred             CCCCceEEEEEEEeCC--CCeEEEEcCCCCccccccccc----ceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHHH
Q psy16949          8 FDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVAK   79 (232)
Q Consensus         8 ~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~~----~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~~   79 (232)
                      .+|.||-||+|.+||+  +||+++|++||||||.++++.    .+.|+++.. |+.+.+ +.++++.|+  +....+.++
T Consensus       128 ~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~Ifk~piDI~~-gi~esq-~l~~Ak~L~F~G~l~~~aA~  205 (412)
T KOG1447|consen  128 LDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELIFKEPIDIFE-GIKESQ-ALRMAKNLGFVGPLKSQAAD  205 (412)
T ss_pred             cccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhhccccchhcc-CCchHH-HHHHHHhccccCcHHHHHHH
Confidence            4789999999999999  899999999999999998765    466888888 999999 888999998  678889999


Q ss_pred             HHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCC
Q psy16949         80 FVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGA  158 (232)
Q Consensus        80 il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~  158 (232)
                      -+++||.+|..-|++.+|||||+.|++| ++|+|||++|||||.|||+++++         -|..++++|+|.+|.++. 
T Consensus       206 eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~fRQKdIFa---------md~~eE~dPrEveAakyn-  275 (412)
T KOG1447|consen  206 EITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEFRQKDIFA---------MDDKEENDPREVEAAKYN-  275 (412)
T ss_pred             HHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhhhhcceee---------cccccccCchhhhhhhcC-
Confidence            9999999999999999999999999998 99999999999999999998554         233446789999999986 


Q ss_pred             CcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        159 SLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       159 ~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                         |+||.+||||+|+||||||||+|||+|+.+||  +||||||+||+...++|++||++    +++||.+|+
T Consensus       276 ---LnYigmDGNIaClVNGAGLAMATmDiIkLnGG--ePANFLDvGGgV~EdqV~~Af~i----lTaDPkVk~  339 (412)
T KOG1447|consen  276 ---LNYIGMDGNIACLVNGAGLAMATMDIIKLNGG--EPANFLDVGGGVKEDQVYQAFKI----LTADPKVKA  339 (412)
T ss_pred             ---cceeeccCceEEEEccchhhhheeeeEEecCC--CCcceeeccCcccHHHHHHHhhh----hccCCceeE
Confidence               99999999999999999999999999999999  59999999999999999999886    699999875

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=100.00  E-value=6e-56  Score=411.30  Aligned_cols=206  Identities=23%  Similarity=0.359  Sum_probs=182.2

Q ss_pred             cCccCCCCCceEEEEEEEeCC-CC-eEEEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRN-SD-TILFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK   74 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~-~p-~ii~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~   74 (232)
                      |+|++  +.+|+||+++.||. +| ++++|.+||++||++++    +..+++|++.. ++++++ +|+++..+|  ++..
T Consensus        99 e~~~~--~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~~~-~~~~~~-~~~~~~~lg~~~~~~  174 (392)
T PRK14046         99 ETADP--IERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAV-GLQQFQ-AREIAFGLGLDIKQV  174 (392)
T ss_pred             EEecC--CCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcCCCC-CCCHHH-HHHHHHHcCCCHHHH
Confidence            56664  46899999999999 66 55668899999999965    45678888888 999999 999999888  6788


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949         75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD  153 (232)
Q Consensus        75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a  153 (232)
                      +++.+++.+||++|.++|++|+|||||++|.+| ++|||+|+.|||||+|||++ +..+       |+.+ +++|.|.+|
T Consensus       175 ~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~-~~~~-------~~~~-~~~~~e~~a  245 (392)
T PRK14046        175 SRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPN-IAEM-------RDPS-QEDPREAQA  245 (392)
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChh-HHhh-------cCcc-cCChhHHHH
Confidence            999999999999999999999999999999987 99999999999999999997 4333       5555 356778889


Q ss_pred             hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                      +++|    ||||+|+||||||+|||||+|+|||+|+.+||  +||||+|+||.++++.+.+++++    +++||++++
T Consensus       246 ~~~~----l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg--~paNPlDlgg~a~~e~~~~aL~~----ll~Dp~Vda  313 (392)
T PRK14046        246 AEHG----LSYVGLDGDIGCIVNGAGLAMATMDMIKLAGG--EPANFLDVGGGASPERVAKAFRL----VLSDRNVKA  313 (392)
T ss_pred             HHcC----CceEccCCcEEEEeCCccHHHHHHHHHHhcCC--CCcCCEEecCCCCHHHHHHHHHH----HHcCCCCCE
Confidence            9987    99999999999999999999999999999999  59999999999999999999665    557888764

>KOG2799|consensus

Probab=100.00  E-value=6.7e-53  Score=377.45  Aligned_cols=202  Identities=25%  Similarity=0.328  Sum_probs=182.4

Q ss_pred             CCCCCceEEEEEEEeCC--CCeEEEEcCCCCccccccccc----ceeeeecCCCCCCHHHHHHHHHHhcC--hhHHHHHH
Q psy16949          7 TFDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQVTSKLLINVA--PAKKAMVA   78 (232)
Q Consensus         7 ~~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~~----~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~   78 (232)
                      +....+|+|+||++||.  +|++++|.+||++||++++..    .+.|++.+. |+++++ +..++..|+  +...+++.
T Consensus       130 Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai~k~pi~~~~-Gls~~~-a~~v~~~lgfs~~~~~~a~  207 (434)
T KOG2799|consen  130 RKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIKKPIDNNT-GLSPEI-ACLVADKLGFSPDGIRKAA  207 (434)
T ss_pred             ecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccchhcccccccC-CCCHHH-HHHHHhhcCCCcccHHHHH
Confidence            34567899999999999  899999999999999997654    578999999 999999 888988898  67788999


Q ss_pred             HHHHHHHHHHHhcccceeeeeeeeecCCc--eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhc
Q psy16949         79 KFVTALYNMYVNLYFTYLEINPLVVTNDT--IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKS  156 (232)
Q Consensus        79 ~il~~Ly~lf~e~da~llEINPL~~t~~g--~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~  156 (232)
                      +.+.+||++|.+.|++++|||||+.+.++  ++|.|+|+.|||||.|||...+. +       ||++ +|+|.|..|+++
T Consensus       208 ~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~fRq~~iF~-~-------rd~~-QEd~re~~aak~  278 (434)
T KOG2799|consen  208 KAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAAFRQKKIFL-L-------RDLS-QEDPREVTAAKV  278 (434)
T ss_pred             HHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHHHHhhhhhh-c-------cchh-hcCchhhhHHHh
Confidence            99999999999999999999999987643  99999999999999999985332 2       8888 688999999999


Q ss_pred             CCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCC
Q psy16949        157 GASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHP  229 (232)
Q Consensus       157 g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~  229 (232)
                      .    |||+.||||||||||||||||||||+|+.+||.  ||||||+||+|+.++++++|++    +++||++
T Consensus       279 ~----ln~igldG~igC~vngaglamaTmdiiklhgg~--panfldVGg~Atve~v~eaf~l----itsd~kv  341 (434)
T KOG2799|consen  279 D----LNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGT--PANFLDVGGGATVEQVREAFSL----ITSDKKV  341 (434)
T ss_pred             c----cceeccCCccceeeccchhhhhheeeeeecCCC--CcceeeeCCCCcHHHHHHHHHH----HhcChhH
Confidence            7    999999999999999999999999999999994  9999999999999999999876    5777765

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=100.00  E-value=6.7e-50  Score=369.87  Aligned_cols=206  Identities=29%  Similarity=0.384  Sum_probs=181.3

Q ss_pred             cCccCCCCCceEEEEEEEeCC--CCeEEEEcCCCCcccccccc----cceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK   74 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~----~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~   74 (232)
                      |+|++  +.+|+|+|++.||.  +|+|++|.+||++||++++.    +.++.+++.. ++++++ ++.+...++  +...
T Consensus        99 Ee~v~--~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~-~~~~~~-a~~~~~~l~~~~~~~  174 (386)
T TIGR01016        99 EEATD--IDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLT-GLLPYQ-AREIAKKLGLEGELV  174 (386)
T ss_pred             EECcc--CCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCc-CCCHHH-HHHHHHHcCCCHHHH
Confidence            56664  36999999999996  89999999999999999765    3456677777 999999 888877777  6788


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949         75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD  153 (232)
Q Consensus        75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a  153 (232)
                      +++.+++.+||++|.++|++++|||||+++++| ++|+|||+.|||||+|||++ +..+       |+.++ +.+.|.+|
T Consensus       175 ~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~-~~~~-------~~~~~-~~~~e~~~  245 (386)
T TIGR01016       175 KQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPD-LEEM-------RDYSQ-EDPREVLA  245 (386)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHH-HHHh-------hcCCc-CChhhhHH
Confidence            999999999999999999999999999999986 99999999999999999996 4433       56664 45678899


Q ss_pred             hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                      +++|    |+||+|+||||||+||||++|+|||++..+||  +|+||+|+||.++.+.+.+++++    +++||++++
T Consensus       246 ~~~~----l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g~--~~aNplDlgg~a~~~~~~~al~~----l~~dp~vd~  313 (386)
T TIGR01016       246 KQWG----LNYVALDGNIGCMVNGAGLAMATMDIIKLYGG--EPANFLDVGGGASAERVREALKL----VLSDKSVKV  313 (386)
T ss_pred             HHcC----CcEEccCCcEEEEECCccHHHHHHHHHHHcCC--CCCCcEEecCCCCHHHHHHHHHH----HHcCCCCCE
Confidence            9998    99999999999999999999999999999999  59999999999999999999665    567888764

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=100.00  E-value=1.1e-42  Score=321.99  Aligned_cols=207  Identities=28%  Similarity=0.375  Sum_probs=176.7

Q ss_pred             ccCccCCCCCceEEEEEEEeCC-CCeE-EEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhH
Q psy16949          2 YSEVSTFDQDEEAYVCIYSSRN-SDTI-LFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAK   73 (232)
Q Consensus         2 ~~~m~~~~i~~E~Ylsi~~Dr~-~p~i-i~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~   73 (232)
                      -|||++  +.+|+|++++.||. +|++ ++|.+||+++|.+++    ...++.+++.. ++++++ ++++...++  +..
T Consensus        98 Ve~~~~--~~~E~~vg~~~D~~fgpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p~~-~~~~~~-a~~~~~~~~~~~~~  173 (388)
T PRK00696         98 VEEGAD--IAKEYYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLT-GLQPFQ-AREIAFKLGLPGEQ  173 (388)
T ss_pred             EEeccC--CCceEEEEEEEcCCCCceEEEEeCCCCcchhhhcccCcceeEEEEcCCCC-CCCHHH-HHHHHHHcCCCHHH
Confidence            367774  46899999999999 8876 588999999999887    33466677766 788888 888888766  678


Q ss_pred             HHHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhh
Q psy16949         74 KAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADL  152 (232)
Q Consensus        74 ~~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~  152 (232)
                      .++++++|.+||++|.++|+.++|||||+++++| ++|+|||+.+||||.|||++ |.++       ++.++ ..+.|.+
T Consensus       174 ~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~-~~~~-------~~~~~-~~~~e~~  244 (388)
T PRK00696        174 VKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPD-LAEL-------RDLSE-EDPLEAE  244 (388)
T ss_pred             HHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHh-HHhh-------cCCCc-CChhhhH
Confidence            8999999999999999999999999999999998 99999999999999999996 6544       33332 2345667


Q ss_pred             hhhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        153 DSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       153 a~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                      ++.+|    |+||+|+||||+|+||||++|+|+|++..+||  +|+||+|+||.++++.+.+++++    +++||++++
T Consensus       245 ~~~~~----~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g~--~~~NPvDl~g~~~~e~~~~aL~~----l~~d~~vd~  313 (388)
T PRK00696        245 ASKYG----LNYVKLDGNIGCMVNGAGLAMATMDIIKLYGG--EPANFLDVGGGATAERVAEAFKI----ILSDPNVKA  313 (388)
T ss_pred             HHhcC----CcEEecCCcEEEEECCchHHHHHHHHHHHcCC--CcCCeEEecCCCCHHHHHHHHHH----HhcCCCCCE
Confidence            77776    99999999999999999999999999999999  49999999999999999999554    567888753

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []

Probab=99.92  E-value=9.4e-25  Score=186.27  Aligned_cols=97  Identities=31%  Similarity=0.461  Sum_probs=83.7

Q ss_pred             cCccCCCCCceEEEEEEEeCC--CCeEEEEcCCCCcccccccc----cceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRN--SDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK   74 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~--~p~ii~S~~GG~dIEe~~~~----~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~   74 (232)
                      +|++  ++++||||||++||+  +|+|++|++||||||+++++    ..+++|++.. |+++++ +++++..+|  ++..
T Consensus        98 ee~v--~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~-g~~~~~-~~~i~~~lg~~~~~~  173 (202)
T PF08442_consen   98 EEFV--DIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTE-GLTPYQ-AREIAKKLGLPGKLA  173 (202)
T ss_dssp             EE-----CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTT-B--HHH-HHHHHHHTTS-CHHH
T ss_pred             EecC--ccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCC-CCCHHH-HHHHHHhccccHHHH
Confidence            3444  457999999999999  79999999999999998654    4678899998 999999 999999988  5788


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeee
Q psy16949         75 AMVAKFVTALYNMYVNLYFTYLEINPLVV  103 (232)
Q Consensus        75 ~~l~~il~~Ly~lf~e~da~llEINPL~~  103 (232)
                      +++.+++.+||++|.++||+|+|||||++
T Consensus       174 ~~~~~~l~~Ly~~F~~~DatllEINPL~~  202 (202)
T PF08442_consen  174 EQLADILKKLYRLFREYDATLLEINPLVE  202 (202)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence            99999999999999999999999999985

They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....

>KOG1254|consensus

Probab=99.63  E-value=2.8e-17  Score=153.07  Aligned_cols=225  Identities=27%  Similarity=0.317  Sum_probs=188.6

Q ss_pred             cCccCCC----CCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCC--CCCHHHHHHHHHHhcChhHHHH
Q psy16949          3 SEVSTFD----QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQT--GVTEEQVTSKLLINVAPAKKAM   76 (232)
Q Consensus         3 ~~m~~~~----i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~--gl~~~~v~~~i~~~l~~~~~~~   76 (232)
                      ||.+++.    .-.|+||.+..+|.+.++.+|..|||++|+.+.++++...++.-.  +=..+- ...+..++.-.+...
T Consensus       135 ePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~p-gSTl~dhi~r~q~~~  213 (600)
T KOG1254|consen  135 EPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYP-GSTLIDHIPREQHDP  213 (600)
T ss_pred             cCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCcc-CchHhhhhhhhhccC
Confidence            6777773    357999999999999999999999999999988776554333221  111233 455556666555667


Q ss_pred             HHHHHHHHHHHHHhcccceeeee-------eeeecCCc----eEEecceeeccCccccccccccC---------------
Q psy16949         77 VAKFVTALYNMYVNLYFTYLEIN-------PLVVTNDT----IYILDLAAKLDSTADFICRAQWG---------------  130 (232)
Q Consensus        77 l~~il~~Ly~lf~e~da~llEIN-------PL~~t~~g----~~alDaki~iDdnA~fR~~~~~~---------------  130 (232)
                      +.+++..|+.+|.+.|.+++|+|       ||+.-..+    ++-+|..+..|+.|.|...+.|.               
T Consensus       214 ~vk~Iv~Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpe  293 (600)
T KOG1254|consen  214 LVKFIVVLGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPE  293 (600)
T ss_pred             hhheEEeehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCcc
Confidence            89999999999999999999999       99885333    79999999999999999888787               


Q ss_pred             -----------CCCCCCCCCCCCChhhhchhhhhhhcCCCcCceEEecCCeEEEEecCc-hhHHHHHHHHHHcCCCCCCC
Q psy16949        131 -----------NIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGG-GASVVYSDTICDLGGASELA  198 (232)
Q Consensus       131 -----------~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~~l~yi~l~G~Ig~~vnGa-Glamat~D~i~~~Gg~~~pA  198 (232)
                                 .++++.+|+|.....|.+.-....+.+.+++|..++..|+|+|++.|. |..+.+.|+....|-+.+-+
T Consensus       294 sf~~l~~~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG  373 (600)
T KOG1254|consen  294 SFDALGADIQETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELG  373 (600)
T ss_pred             chhhhhhhhccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhcc
Confidence                       778888899998888888888888888999999999999999999999 99999999999999877899


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHHHh-cCCC
Q psy16949        199 NYGEYSGAPSEQQTYEYAKTILSLMT-QEKH  228 (232)
Q Consensus       199 NflD~GG~a~~~~v~~~~~~il~~~~-~~~~  228 (232)
                      |+-.+||-+...++.+..+..+++|+ -+|+
T Consensus       374 ~gg~~Sllw~~~~lp~Ya~kfie~~~m~~aD  404 (600)
T KOG1254|consen  374 NGGVYSLLWFQRRLPQYARKFIEICTMLTAD  404 (600)
T ss_pred             ccceEccccccccchHHHHHHHHHHhhccCC
Confidence            99999999999999999999999998 4443

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A

Probab=99.44  E-value=5.6e-13  Score=115.44  Aligned_cols=107  Identities=23%  Similarity=0.392  Sum_probs=74.7

Q ss_pred             ccCccCCCCCceEEEEEEEeCC-CCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcC----------
Q psy16949          2 YSEVSTFDQDEEAYVCIYSSRN-SDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVA----------   70 (232)
Q Consensus         2 ~~~m~~~~i~~E~Ylsi~~Dr~-~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~----------   70 (232)
                      -|+|++. ...|+.+++..|+. ||+|+|+ .||+.+|-+.+....++ |++     ... ++++...+.          
T Consensus       102 Vq~m~~~-~g~El~vG~~~Dp~FGPvv~~G-~GG~~vE~~~D~~~~l~-Pl~-----~~~-a~~mi~~l~~~~lL~G~RG  172 (222)
T PF13549_consen  102 VQEMAPS-GGRELIVGVRRDPQFGPVVMFG-LGGIFVELLKDVAFRLP-PLS-----EAD-AREMIRELRAYPLLRGYRG  172 (222)
T ss_dssp             EEE-------EEEEEEEEEETTTEEEEEEE-E-STTHHHH---EEEES-S-------HHH-HHHHHHTSTTHHHHH----
T ss_pred             EEEcccC-CcEEEEEEEEECCCCCCEEEEc-CCCceeeeecceEEeeC-CCC-----HHH-HHHHHHHHHhHHhhcccCC
Confidence            3899885 56999999999999 9999999 99999999888877776 444     445 444433221          


Q ss_pred             --hhHHHHHHHHHHHHHHHHHhc-ccceeeeeeeeecCCceEEecceeec
Q psy16949         71 --PAKKAMVAKFVTALYNMYVNL-YFTYLEINPLVVTNDTIYILDLAAKL  117 (232)
Q Consensus        71 --~~~~~~l~~il~~Ly~lf~e~-da~llEINPL~~t~~g~~alDaki~i  117 (232)
                        +.+++.++++|.+++++..++ +..-+|||||.++.+|++|+||+|.+
T Consensus       173 ~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g~~avDa~i~l  222 (222)
T PF13549_consen  173 RPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDGAVAVDARIRL  222 (222)
T ss_dssp             ---B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS-EEE--EEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCceEEEEEEEEC
Confidence              356889999999999999997 56669999999999999999999975

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=98.69  E-value=1.5e-08  Score=83.10  Aligned_cols=51  Identities=22%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             EecCchhHHHHHHHHHHc--------------CCCCCCCeeEecCCCCC----------HHHHHHHHHHHHHHHhcCCCC
Q psy16949        174 MVAGGGASVVYSDTICDL--------------GGASELANYGEYSGAPS----------EQQTYEYAKTILSLMTQEKHP  229 (232)
Q Consensus       174 ~vnGaGlamat~D~i~~~--------------Gg~~~pANflD~GG~a~----------~~~v~~~~~~il~~~~~~~~~  229 (232)
                      |+|||||+|.|||+|+.+              |+  +|+||||+||.+.          ++.+.++++.    +.+||++
T Consensus         1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~--~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~----~~~Dp~v   74 (153)
T PF00549_consen    1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGG--GPANFLDLGGDAFTQGRPHPMIDPSTRNEALEI----EAADPEV   74 (153)
T ss_dssp             EESSHHHHHHHHHHHHHTTT------GCCEEETC--TEEEEEECTSSSSHTTS--TTT-SSHHHHHHHH----HHTSTTE
T ss_pred             CcCcHHHHHHHHHHHHHhhccccccccccccCCC--CceeEEEeCCCcccccCcCCCcCHHHHHHHHHH----HhcCCCc
Confidence            689999999999999999              88  5999999999999          7899999654    5688887


Q ss_pred             C
Q psy16949        230 Q  230 (232)
Q Consensus       230 ~  230 (232)
                      +
T Consensus        75 ~   75 (153)
T PF00549_consen   75 K   75 (153)
T ss_dssp             S
T ss_pred             c
Confidence            5

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.43  E-value=0.00032  Score=66.70  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=49.9

Q ss_pred             CCeEEEEecCchhHHHHHHHHHHcCCCC-------------------CCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy16949        168 KGRIWTMVAGGGASVVYSDTICDLGGAS-------------------ELANYGEYSGAPSEQQTYEYAKTILSLMTQEKH  228 (232)
Q Consensus       168 ~G~Ig~~vnGaGlamat~D~i~~~Gg~~-------------------~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~  228 (232)
                      ..+|+++.||+|+++.+.|.+..+|...                   .++|++|++|.++++.+.++++    .+++||+
T Consensus       295 g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~----~l~~dp~  370 (447)
T TIGR02717       295 GNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALK----TVAEDEN  370 (447)
T ss_pred             CCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHH----HHHcCCC
Confidence            5789999999999999999999999851                   1239999999999998888855    4567888


Q ss_pred             CCC
Q psy16949        229 PQG  231 (232)
Q Consensus       229 ~~~  231 (232)
                      +++
T Consensus       371 vd~  373 (447)
T TIGR02717       371 VDG  373 (447)
T ss_pred             CCE
Confidence            753

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
3pff_A	829	Truncated Human Atp-Citrate Lyase With Adp And Tart		5e-95
3mwe_A	425	Truncated Human Atp-Citrate Lyase With Tartrate Bou		1e-94
3mwd_A	425	Truncated Human Atp-Citrate Lyase With Citrate Boun		4e-93
2fp4_B	395	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		9e-04

>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829

Iteration: 1
 Score =  343 bits (879), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173
Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233
Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 425

Iteration: 1
 Score =  342 bits (877), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173
Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233
Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 425

Iteration: 1
 Score =  337 bits (863), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 189/223 (84%), Gaps = 1/223 (0%)
Query: 10  QDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV 69
           Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL++ 
Sbjct: 115 QAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK-LNPEDIKKHLLVHA 173
Query: 70  APAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQW 129
              KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +W
Sbjct: 174 PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKW 233
Query: 130 GNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTIC 189
           G+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWT VAGGGASVVYSDTIC
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTIC 293
Query: 190 DLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           DLGG +ELANYGEYSGAPSEQQTY+YAKTILSL T+EKHP GK
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLXTREKHPDGK 336

>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 26/221 (11%)
Query: 8   FDQDEEAYVCIYSSR--NSDTILFHHQGGVDIGDVDAK----ALKLEIPVGQTGV--TEE 59
            D   E Y+ I   R  N   ++   QGGVDI +V A       K +I + + G+  ++ 
Sbjct: 109 LDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE-GIKDSQA 167
Query: 60  QVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
           Q  ++ L  + P +    A  +  LYN+++ +  T +E+NP   T +  +   D     D
Sbjct: 168 QRMAENLGFLGPLQN-QAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFD 226
Query: 119 STADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGG 178
             A+F    +  +I     F  D   E   I +      A   L  +   G I   V G 
Sbjct: 227 DNAEF----RQKDI-----FAMDDKSENEPIEN----EAAKYDLKYIGLDGNIACFVNGA 273
Query: 179 GASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTI 219
           G ++   D I   GG    AN+ +  G   E Q Y+  K +
Sbjct: 274 GLAMATCDIIFLNGGKP--ANFLDLGGGVKESQVYQAFKLL 312

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	1e-130
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	1e-104
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	1e-10
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	4e-10
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	1e-08

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829

 Score =  385 bits (990), Expect = e-130
 Identities = 158/225 (70%), Positives = 191/225 (84%), Gaps = 1/225 (0%)

Query: 8   FDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLI 67
             Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V +  +  E +   LL+
Sbjct: 113 HSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDE-KLNPEDIKKHLLV 171

Query: 68  NVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRA 127
           +    KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ 
Sbjct: 172 HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKV 231

Query: 128 QWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDT 187
           +WG+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDT
Sbjct: 232 KWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDT 291

Query: 188 ICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           ICDLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 292 ICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425

 Score =  307 bits (789), Expect = e-104
 Identities = 158/224 (70%), Positives = 190/224 (84%), Gaps = 1/224 (0%)

Query: 9   DQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLIN 68
            Q EE YVCIY++R  D +LFHH+GGVD+GDVDAKA KL + V    +  E +   LL++
Sbjct: 114 SQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVD-EKLNPEDIKKHLLVH 172

Query: 69  VAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQ 128
               KK ++A F++ L+N Y +LYFTYLEINPLVVT D +Y+LDLAAK+D+TAD+IC+ +
Sbjct: 173 APEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVK 232

Query: 129 WGNIDYPPPFGRDAYPEEAYIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTI 188
           WG+I++PPPFGR+AYPEEAYIADLD+KSGASLKLT+LN KGRIWTMVAGGGASVVYSDTI
Sbjct: 233 WGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTI 292

Query: 189 CDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK 232
           CDLGG +ELANYGEYSGAPSEQQTY+YAKTILSLMT+EKHP GK
Sbjct: 293 CDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK 336

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 9   DQDEEAYVCIYSSRNSDTILF--HHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQ-- 60
           D   E Y+ I   R+ +  +     QGGVDI +V A       K +I +   G+ + Q  
Sbjct: 110 DISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDI-IEGIKDSQAQ 168

Query: 61  -VTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKL- 117
            +   L        +A  A  +  LYN+++ +  T +E+NP   T +  +   D  AK+ 
Sbjct: 169 RMAENLGFLGPLQNQA--ADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFD--AKIN 224

Query: 118 -DSTADF 123
            D  A+F
Sbjct: 225 FDDNAEF 231

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 9   DQDEEAYVCIYSSRNSDTILF--HHQGGVDIGDVDAKA----LKLEIPVGQTGVTEEQ-- 60
           D  +E Y+     R+S  ++F    +GGV+I  V  +      K+ +    TG    Q  
Sbjct: 103 DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDP-LTGPMPYQGR 161

Query: 61  -VTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKL- 117
            +  KL +     ++    K    L  +++      +EINPLV+T    +  LD   KL 
Sbjct: 162 ELAFKLGLEGKLVQQF--TKIFMGLATIFLERDLALIEINPLVITKQGDLICLD--GKLG 217

Query: 118 -DSTADF 123
            D  A F
Sbjct: 218 ADGNALF 224

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 20/128 (15%)

Query: 9   DQDEEAYVCIYSSRNSDTILF--HHQGGVDIGDVDAKA----LKLEI-PVGQTGVTEEQ- 60
           D  +E Y  +   R    ++     +GGVDI +V A+      K  I P    G    + 
Sbjct: 95  DIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPH--KGFRPFEA 152

Query: 61  --VTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAK- 116
             +  +  +         +A+ + ALY  Y  +  +  EINPLVVT D  I   D  AK 
Sbjct: 153 REMVKRAGL---EGNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAAD--AKI 207

Query: 117 -LDSTADF 123
            LD  A F
Sbjct: 208 VLDDNALF 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	100.0
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	100.0
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	100.0
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	100.0
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	100.0
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	99.7
2csu_A	457	457AA long hypothetical protein; structural genomi	99.09

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*

Probab=100.00  E-value=2.6e-66  Score=482.99  Aligned_cols=229  Identities=69%  Similarity=1.181  Sum_probs=208.7

Q ss_pred             ccCccCCCCCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcChhHHHHHHHHH
Q psy16949          2 YSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFV   81 (232)
Q Consensus         2 ~~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~~~~~~~l~~il   81 (232)
                      -|||+++++.+|+||||+.||.+|+|++|++|||+||+++++++++++|+++ +++.+++.+++...+.+..+++++++|
T Consensus       107 Ve~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~-~l~~~~~~~~ll~g~~~~d~~~la~~l  185 (425)
T 3mwd_A          107 IEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDE-KLNPEDIKKHLLVHAPEDKKEILASFI  185 (425)
T ss_dssp             EEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTC-CCCHHHHHHTTTTTSCTTTHHHHHHHH
T ss_pred             EEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCcc-ccCHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            4899988888999999999999999999999999999999998888999999 999888334454445567789999999


Q ss_pred             HHHHHHHHhcccceeeeeeeeecCCceEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCCcC
Q psy16949         82 TALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLK  161 (232)
Q Consensus        82 ~~Ly~lf~e~da~llEINPL~~t~~g~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~~  161 (232)
                      .+||++|+++|++++|||||++|++|++|+|||++|||||+|||++.|..++++.+|.|+.+|+|.+..+.+++.|++++
T Consensus       186 ~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~  265 (425)
T 3mwd_A          186 SGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLK  265 (425)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEE
T ss_pred             HHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccC
Confidence            99999999999999999999999989999999999999999999988998888888889999887655555567777888


Q ss_pred             ceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        162 LTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       162 l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                      ||||+|+||||||||||||||+|||+|+++||.++||||||+||+||+++++++++.+|+++++|||+|+
T Consensus       266 l~yv~ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~  335 (425)
T 3mwd_A          266 LTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG  335 (425)
T ss_dssp             EEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTC
T ss_pred             ccEEecCCeEEEEecCchHHHHHHHHHHHcCCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence            9999999999999999999999999999999943499999999999999999999999999999999987

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-63  Score=494.36  Aligned_cols=230  Identities=69%  Similarity=1.181  Sum_probs=210.8

Q ss_pred             ccCccCCCCCceEEEEEEEeCCCCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhcChhHHHHHHHHH
Q psy16949          2 YSEVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINVAPAKKAMVAKFV   81 (232)
Q Consensus         2 ~~~m~~~~i~~E~Ylsi~~Dr~~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~~~~~~~l~~il   81 (232)
                      -|||+++++.+||||||+.||.+|+|++|++|||+||++++++.++++|+.. +++.+++.+++...+.+..+++++++|
T Consensus       107 VE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGvdIE~vad~~~~~~I~p~~-gl~~~~a~~~ll~g~~~~d~~ala~~L  185 (829)
T 3pff_A          107 IEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDE-KLNPEDIKKHLLVHAPEDKKEILASFI  185 (829)
T ss_dssp             EEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCCHHHHSEEEEEETTC-CCCHHHHHHTTTTTSCGGGHHHHHHHH
T ss_pred             EEecccCCCccEEEEEEEecCCCCEEEEECCCCcchhhhhhhceEEecCCcc-ccCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4899998888999999999999999999999999999999988888999998 999999435555555677899999999


Q ss_pred             HHHHHHHHhcccceeeeeeeeecCCceEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhhhhcCCCcC
Q psy16949         82 TALYNMYVNLYFTYLEINPLVVTNDTIYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLDSKSGASLK  161 (232)
Q Consensus        82 ~~Ly~lf~e~da~llEINPL~~t~~g~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a~~~g~~~~  161 (232)
                      .+||++|+++|++++|||||++|++|++|||||++|||||+|||++.|..++++.+|.|+.+|+|.+..+.+++.|++++
T Consensus       186 ~~Ly~lf~d~d~t~lEINPLvvt~dgv~ALDAKi~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~  265 (829)
T 3pff_A          186 SGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLK  265 (829)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEETTEEEECCCEEEEEGGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEE
T ss_pred             HHHHHHHHhCCccEEEeeceEecCCceEEEeceeeeccchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccC
Confidence            99999999999999999999999999999999999999999999988998888878889999888666555667788888


Q ss_pred             ceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16949        162 LTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQGK  232 (232)
Q Consensus       162 l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~~  232 (232)
                      ||||+||||||||||||||||+|||+|+++||.++||||||+||+|+.++|+++++.+|+++++||++|+.
T Consensus       266 l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~i  336 (829)
T 3pff_A          266 LTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK  336 (829)
T ss_dssp             EEESCTTCSEEECCBSHHHHHHHHHHHHHTTCTTTBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCE
T ss_pred             ccEEecCCeEEeeccCchHHHHHHHHHHHcCCCCCCceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            99999999999999999999999999999999545999999999999999999999999999999999873

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=100.00  E-value=6e-55  Score=403.72  Aligned_cols=206  Identities=25%  Similarity=0.383  Sum_probs=186.7

Q ss_pred             cCccCCCCCceEEEEEEEeCC-C-CeEEEEcCCCCccccc----ccccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRN-S-DTILFHHQGGVDIGDV----DAKALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK   74 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~-~-p~ii~S~~GG~dIEe~----~~~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~   74 (232)
                      |+|++  +.+|+|++++.||. + |++++|++||++||++    ++++.+++|++.. ++++++ ++++++.+|  +...
T Consensus       106 Ee~v~--~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~-~l~~~~-a~~l~~~lg~~~~~~  181 (395)
T 2fp4_B          106 AEALD--ISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE-GIKDSQ-AQRMAENLGFLGPLQ  181 (395)
T ss_dssp             EECCC--CSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTT-CCCHHH-HHHHHHHTTCCHHHH
T ss_pred             EEccC--CceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCC-CCCHHH-HHHHHHHhCcCHHHH
Confidence            56665  46999999999999 4 9999999999999999    6677889999999 999999 999999888  6678


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949         75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD  153 (232)
Q Consensus        75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a  153 (232)
                      .++++++.+||++|.++|++++|||||++|.+| ++|+|||+.|||||+|||++ +..+       ||.+ +|+|.|.+|
T Consensus       182 ~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~-------~d~~-~~~~~e~~a  252 (395)
T 2fp4_B          182 NQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKD-IFAM-------DDKS-ENEPIENEA  252 (395)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHH-HHTT-------CCCT-TSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcc-hhhh-------cCCC-ccChhhhhH
Confidence            999999999999999999999999999999885 99999999999999999997 3333       6767 466788899


Q ss_pred             hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                      ++++    |||++|+||||||+|||||+|+|||+|+.+||  +||||||+||+|+.++++++|+++    ++|||+|+
T Consensus       253 ~~~~----l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg--~paNflDvgG~a~~e~~~~al~~i----l~d~~v~~  320 (395)
T 2fp4_B          253 AKYD----LKYIGLDGNIACFVNGAGLAMATCDIIFLNGG--KPANFLDLGGGVKESQVYQAFKLL----TADPKVEA  320 (395)
T ss_dssp             HHTT----CEEEECSSSEEEEESSHHHHHHHHHHHHHTTC--CBCEEEECCSSCCHHHHHHHHHHH----HHCTTCCE
T ss_pred             HHcC----CceeccCCeEEEEecCchHHHHHHHHHHHcCC--CcCCcEEECCCCCHHHHHHHHHHH----hCCCCCCE
Confidence            9987    99999999999999999999999999999999  599999999999999999997764    58899875

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=100.00  E-value=1.8e-54  Score=399.74  Aligned_cols=206  Identities=23%  Similarity=0.284  Sum_probs=186.9

Q ss_pred             cCccCCCCCceEEEEEEEeCC-C-CeEEEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRN-S-DTILFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK   74 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~-~-p~ii~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~   74 (232)
                      |+|++  +.+|+|++++.||. + |++++|++|||+||++++    ++.+++++|.. ++++++ ++++++.+|  +...
T Consensus        99 Ee~v~--~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~-gl~~~~-a~~~~~~lG~~~~~~  174 (388)
T 2nu8_B           99 EAATD--IAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLT-GPMPYQ-GRELAFKLGLEGKLV  174 (388)
T ss_dssp             EECCC--EEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTT-BCCHHH-HHHHHHHTTCCTHHH
T ss_pred             EEccc--cCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCC-CCCHHH-HHHHHHHcCCCHHHH
Confidence            56665  35899999999999 5 999999999999999875    44677888888 999999 999998887  6789


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949         75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD  153 (232)
Q Consensus        75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a  153 (232)
                      +++++++.+||++|.++|++++|||||+++++| ++|+|||+.|||||+|||++ |.++       |+.+ +|+|.|.+|
T Consensus       175 ~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~-~~~~-------~~~~-~~~~~e~~a  245 (388)
T 2nu8_B          175 QQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-LREM-------RDQS-QEDPREAQA  245 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-HHHH-------CCGG-GSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcc-hhhh-------cCcc-ccChhHHHH
Confidence            999999999999999999999999999999887 99999999999999999996 7655       6666 577889999


Q ss_pred             hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                      +++|    |+|++|+||||||+|||||+|+|||+|+++||  +||||||+||+|+.++++++|++||    +|||+|+
T Consensus       246 ~~~~----l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg--~~aNflD~gG~a~~~~~~~~~~~il----~d~~v~~  313 (388)
T 2nu8_B          246 AQWE----LNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG--EPANFLDVGGGATKERVTEAFKIIL----SDDKVKA  313 (388)
T ss_dssp             HHTT----CEEEECSSSEEEEESSHHHHHHHHHHHHHTTC--CBCEEEECCSCCCHHHHHHHHHHHH----TSTTCCE
T ss_pred             HHhc----CCccCCCCEEEEEeCCCchhhhhhHHHHHcCC--CcCceeEecCCCCHHHHHHHHHHHh----cCCCCCE
Confidence            9987    99999999999999999999999999999999  5999999999999999999988765    8899875

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=100.00  E-value=3e-52  Score=385.91  Aligned_cols=205  Identities=25%  Similarity=0.356  Sum_probs=184.1

Q ss_pred             cCccCCCCCceEEEEEEEeCC-C-CeEEEEcCCCCccccccc----ccceeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRN-S-DTILFHHQGGVDIGDVDA----KALKLEIPVGQTGVTEEQVTSKLLINVA--PAKK   74 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~-~-p~ii~S~~GG~dIEe~~~----~~~~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~   74 (232)
                      |+|++  +.+|+|++++.||. + |+|++|.+|||+||++++    ++.+++|++.. ++++++ ++++++.+|  +. +
T Consensus        91 Ee~v~--~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~-~l~~~~-a~~~~~~lG~~g~-~  165 (397)
T 3ufx_B           91 AEAVD--IAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHK-GFRPFE-AREMVKRAGLEGN-L  165 (397)
T ss_dssp             EECCC--EEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTT-BCCHHH-HHHHHHHHTCCSC-H
T ss_pred             EEeec--CCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCC-CCCHHH-HHHHHHHcCCchH-H
Confidence            56664  35899999999999 5 999999999999999865    45677888888 999999 899988887  45 9


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCChhhhchhhhh
Q psy16949         75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAYPEEAYIADLD  153 (232)
Q Consensus        75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~~~E~~~e~~a  153 (232)
                      ++++++|.+||++|.++|++++|||||++|.+| ++|+|||+.|||||+|||++ |..+       |+.+ +|+|.|.+|
T Consensus       166 ~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~-------~~~~-~~~~~e~~a  236 (397)
T 3ufx_B          166 NKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPD-LAEL-------REVE-AEHPLEVEA  236 (397)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHH-HHTT-------HHHH-CSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchh-hhhh-------cCcc-cCCHhHHHH
Confidence            999999999999999999999999999999887 99999999999999999996 7665       5555 466788899


Q ss_pred             hhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q psy16949        154 SKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQG  231 (232)
Q Consensus       154 ~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~~  231 (232)
                      +++|    |||++|+||||||+|||||+|+|||+|..+||  +||||+|+||+|+++++++++++++    +||++++
T Consensus       237 ~~~~----l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~--~~aN~lD~gG~a~~e~~~~al~~~l----~d~~v~~  304 (397)
T 3ufx_B          237 SNYG----FAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGG--KPANFLDIGGGAKADVVYNALKVVL----KDPDVKG  304 (397)
T ss_dssp             HHTT----CEEEECSSSEEEEESSHHHHHHHHHHHHHTTC--CBSEEEECCSCCCHHHHHHHHHHHH----TCTTCCE
T ss_pred             HHcC----CCcccCCCcEEEEecCccHHHHHHHHHHHcCC--CcCCcEecCCCCCHHHHHHHHHHHH----cCCCCCE
Confidence            9987    99999999999999999999999999999999  5999999999999999999988765    6898875

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}

Probab=99.70  E-value=5.9e-17  Score=138.98  Aligned_cols=109  Identities=17%  Similarity=0.314  Sum_probs=89.0

Q ss_pred             ccCccCCCCCceEEEEEEEeCC-CCeEEEEcCCCCcccccccccceeeeecCCCCCCHHHHHHHHHHhc-------C---
Q psy16949          2 YSEVSTFDQDEEAYVCIYSSRN-SDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTSKLLINV-------A---   70 (232)
Q Consensus         2 ~~~m~~~~i~~E~Ylsi~~Dr~-~p~ii~S~~GG~dIEe~~~~~~~~~i~~~~~gl~~~~v~~~i~~~l-------~---   70 (232)
                      -|+|++.  .+|+|++++.|+. +|++++| .||+++|...+....++  +    +++++ ++++...+       |   
T Consensus       112 VEe~i~~--g~E~~v~v~~d~~~g~v~~~~-~Gg~~iE~~~d~~~~~~--P----l~~~~-~~~~~~~~~~~~~~~g~~G  181 (238)
T 1wr2_A          112 VAPMLKP--GREVIIGVTEDPQFGHAIMFG-LGGIFVEILKDVTFRLV--P----ITEKD-ARKMIQEIKAYPILAGARG  181 (238)
T ss_dssp             EEECCCC--CEEEEEEEEEETTTEEEEEEE-ECSTTHHHHCCCEEEES--S----CCHHH-HHHHHHTSTTHHHHHCC--
T ss_pred             EEECCCC--CeEEEEEEEeCCCCCcEEEEe-cCCceeeeecceeeecC--C----CCHHH-HHHHHHHHHHHHHhcCCCC
Confidence            3778774  5899999999996 8999999 99999998765433333  2    45566 66665443       4   


Q ss_pred             --hhHHHHHHHHHHHHHHHHHhcc--cceeeeeeeeecCC--ceEEecceeeccCc
Q psy16949         71 --PAKKAMVAKFVTALYNMYVNLY--FTYLEINPLVVTND--TIYILDLAAKLDST  120 (232)
Q Consensus        71 --~~~~~~l~~il~~Ly~lf~e~d--a~llEINPL~~t~~--g~~alDaki~iDdn  120 (232)
                        ..+++.++++|.+||++|.+.|  +.++|||||+++++  +++|+|||+.+|||
T Consensus       182 ~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~~~~~~~  237 (238)
T 1wr2_A          182 EEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK  237 (238)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC
T ss_pred             CChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEEEEeCCC
Confidence              2568899999999999999998  89999999999977  69999999999998

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=99.09  E-value=5.4e-11  Score=111.46  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             ceEEec--CCeEEEEecCchhHHHHHHHHHHcCCC-------------------CCCCeeEecCCCCCHHHHHHHHHHHH
Q psy16949        162 LTILNK--KGRIWTMVAGGGASVVYSDTICDLGGA-------------------SELANYGEYSGAPSEQQTYEYAKTIL  220 (232)
Q Consensus       162 l~yi~l--~G~Ig~~vnGaGlamat~D~i~~~Gg~-------------------~~pANflD~GG~a~~~~v~~~~~~il  220 (232)
                      |+| .+  +++|++|+||+|++|.++|++..+|+.                   ..|+||+|+||.++++.+.+++++  
T Consensus       286 l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~--  362 (457)
T 2csu_A          286 FSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKL--  362 (457)
T ss_dssp             TTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHH--
T ss_pred             hcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHH--
Confidence            677 66  799999999999999999999999994                   127899999999999999999665  


Q ss_pred             HHHhcCCCCCC
Q psy16949        221 SLMTQEKHPQG  231 (232)
Q Consensus       221 ~~~~~~~~~~~  231 (232)
                        +++||++++
T Consensus       363 --~l~dp~vd~  371 (457)
T 2csu_A          363 --LLQDPNVDM  371 (457)
T ss_dssp             --HHHSTTCSE
T ss_pred             --HhcCCCCCE
Confidence              567888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d2nu7b1	150	c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta	1e-06
d2nu7b2	238	d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-	3e-05
d1eucb2	246	d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-	8e-04

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 169 GRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILS 221
           G I  MV G G ++   D +   GG  E AN+ +  G  ++++  E  K ILS
Sbjct: 19  GNIGCMVNGAGLAMGTMDIVKLHGG--EPANFLDVGGGATKERVTEAFKIILS 69

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 4   EVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDV----DAKALKLEIPVGQTGVTEE 59
             +   ++      +  S      +   +GGV+I  V         K+ +      +  +
Sbjct: 100 AATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQ 159

Query: 60  QVTSKLLINVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
                  + +         K    L  +++      +EINPLV+T    +  LD     D
Sbjct: 160 GRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGAD 219

Query: 119 STADF 123
             A F
Sbjct: 220 GNALF 224

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 4   EVSTFDQDEEAYVCIYSSRNSDTILFHHQGGVDIGDVDAKALKLEIPVGQTGVTEEQVTS 63
           E     ++    + +  S N   ++   QGGVDI +V A   +L        +   + + 
Sbjct: 108 EALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQ 167

Query: 64  KLLI----NVAPAKKAMVAKFVTALYNMYVNLYFTYLEINPLVVTND-TIYILDLAAKLD 118
              +          +   A  +  LYN+++ +  T +E+NP   T +  +   D     D
Sbjct: 168 AQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFD 227

Query: 119 STADF 123
             A+F
Sbjct: 228 DNAEF 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	99.96
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	99.96
d2nu7b2	238	Succinyl-CoA synthetase, beta-chain, N-terminal do	99.95
d1eucb2	246	Succinyl-CoA synthetase, beta-chain, N-terminal do	99.89
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	97.75

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=1.3e-30  Score=208.23  Aligned_cols=74  Identities=27%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             chhhhhhhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCC
Q psy16949        148 YIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEK  227 (232)
Q Consensus       148 ~~e~~a~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~  227 (232)
                      |.|.+|+++|    |+||+||||||||+|||||+|+|||+|+++||  +||||||+||+|+.+++++||++    +++||
T Consensus         2 p~E~~a~~~~----l~yv~LdG~IG~i~NGAGlaMaTmD~i~~~Gg--~pANFlDiGGga~~e~v~~al~i----il~d~   71 (148)
T d1eucb1           2 PIENEAAKYD----LKYIGLDGNIACFVNGAGLAMATCDIIFLNGG--KPANFLDLGGGVKESQVYQAFKL----LTADP   71 (148)
T ss_dssp             HHHHHHHHTT----CEEEECSCSEEEEESSHHHHHHHHHHHHHTTC--CBSEEEECCSSCCHHHHHHHHHH----TTSCT
T ss_pred             hhhHHHHHcC----CcEEEecCcEEEEecCCccchhHHHHHHHcCC--CeeeEEecCCCCCHHHHHHHHHH----HHCCC
Confidence            5678999998    99999999999999999999999999999999  69999999999999999999776    57899


Q ss_pred             CCCC
Q psy16949        228 HPQG  231 (232)
Q Consensus       228 ~~~~  231 (232)
                      ++|+
T Consensus        72 ~Vk~   75 (148)
T d1eucb1          72 KVEA   75 (148)
T ss_dssp             TCCE
T ss_pred             CccE
Confidence            9874

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.6e-30  Score=207.23  Aligned_cols=74  Identities=23%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             chhhhhhhcCCCcCceEEecCCeEEEEecCchhHHHHHHHHHHcCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHhcCC
Q psy16949        148 YIADLDSKSGASLKLTILNKKGRIWTMVAGGGASVVYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILSLMTQEK  227 (232)
Q Consensus       148 ~~e~~a~~~g~~~~l~yi~l~G~Ig~~vnGaGlamat~D~i~~~Gg~~~pANflD~GG~a~~~~v~~~~~~il~~~~~~~  227 (232)
                      |.|.+|+++|    |+||+||||||||+|||||+|+|||+|+++||  +||||||+||+|+.++|++||++|    ++||
T Consensus         2 ~~E~~a~~~~----l~yv~LdG~Ig~i~nGAGlamaTmD~i~~~Gg--~pANFlDiGG~a~~e~v~~al~li----l~d~   71 (150)
T d2nu7b1           2 PREAQAAQWE----LNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG--EPANFLDVGGGATKERVTEAFKII----LSDD   71 (150)
T ss_dssp             HHHHHHHHTT----CEEEECSSSEEEEESSHHHHHHHHHHHHHTTC--CBCEEEECCSCCCHHHHHHHHHHH----HTST
T ss_pred             HhHHHHHHcC----CcEEEecCcEEEEEcCCccchhhHHHHHHCCC--CeeEEEecCCCccHHHHHHHHHHH----HcCC
Confidence            5778999998    99999999999999999999999999999999  699999999999999999998876    4699


Q ss_pred             CCCC
Q psy16949        228 HPQG  231 (232)
Q Consensus       228 ~~~~  231 (232)
                      ++|+
T Consensus        72 ~vk~   75 (150)
T d2nu7b1          72 KVKA   75 (150)
T ss_dssp             TCCE
T ss_pred             CCCE
Confidence            9874

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=5.5e-28  Score=206.92  Aligned_cols=125  Identities=21%  Similarity=0.281  Sum_probs=105.8

Q ss_pred             cCccCCCCCceEEEEEEEeCC-CC-eEEEEcCCCCcccccccccc----eeeeecCCCCCCHHHHHHHHHHhcC--hhHH
Q psy16949          3 SEVSTFDQDEEAYVCIYSSRN-SD-TILFHHQGGVDIGDVDAKAL----KLEIPVGQTGVTEEQVTSKLLINVA--PAKK   74 (232)
Q Consensus         3 ~~m~~~~i~~E~Ylsi~~Dr~-~p-~ii~S~~GG~dIEe~~~~~~----~~~i~~~~~gl~~~~v~~~i~~~l~--~~~~   74 (232)
                      |+|++  +.+|+|+|++.||. +| ++++|.+||+++|++.+..+    ..++++.. ++..+. .++++..++  +...
T Consensus        99 e~~~~--~~~E~~lg~~~D~~~g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~  174 (238)
T d2nu7b2          99 EAATD--IAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLT-GPMPYQ-GRELAFKLGLEGKLV  174 (238)
T ss_dssp             EECCC--EEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECCTTT-CCCHHH-HHHHHHHTTCCTHHH
T ss_pred             cceee--cccceEEEEEEeccCCceEEEEecccceeeEeeeccccccccccccCccc-ccchhh-HHHHHHhcCCcchhh
Confidence            44544  46899999999999 65 67888899999999976543    34555555 888888 777777777  5678


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCC
Q psy16949         75 AMVAKFVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNI  132 (232)
Q Consensus        75 ~~l~~il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~  132 (232)
                      .++.+++.++|++|.+.|++++|||||++|++| ++|+|||++|||||+||||+ |..+
T Consensus       175 ~~~~~~i~~l~~~~~~~~~~~lEINPLiv~~~G~vvAlDAki~lDdnA~fr~~~-~~~~  232 (238)
T d2nu7b2         175 QQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-LREM  232 (238)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-HHHT
T ss_pred             HHHHHHHHHhhHhhhcCCceEEeecceEECCCCCEEEEEeEEeecCcchhcChh-HHhh
Confidence            899999999999999999999999999999998 99999999999999999997 6555

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.89  E-value=1.7e-23  Score=179.25  Aligned_cols=126  Identities=25%  Similarity=0.423  Sum_probs=102.0

Q ss_pred             CCCCceEEEEEEEeCC-C-CeEEEEcCCCCccccccccccee----eeecCCCCCCHHHHHHHHHHhcC--hhHHHHHHH
Q psy16949          8 FDQDEEAYVCIYSSRN-S-DTILFHHQGGVDIGDVDAKALKL----EIPVGQTGVTEEQVTSKLLINVA--PAKKAMVAK   79 (232)
Q Consensus         8 ~~i~~E~Ylsi~~Dr~-~-p~ii~S~~GG~dIEe~~~~~~~~----~i~~~~~gl~~~~v~~~i~~~l~--~~~~~~l~~   79 (232)
                      ..+.+|+|++++.|+. + +++++|..||+++|+.++.....    ...... .+.... ...+....+  .....++..
T Consensus       110 ~~~~~E~~vg~~~D~~~g~~~l~~~~~GGv~ve~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  187 (246)
T d1eucb2         110 LDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE-GIKDSQ-AQRMAENLGFLGPLQNQAAD  187 (246)
T ss_dssp             CCCSEEEEEEEEEEGGGTEEEEEEESSCSSCHHHHHHHCGGGCEEEECBTTT-BCCHHH-HHHHHHHTTCCTHHHHHHHH
T ss_pred             ccccceeeeeeeecccccceeEEEeechhhhhhhhhhhccccchhhcccccc-cccchH-HHHHHHhcCCchhhhHHHHH
Confidence            3456999999999999 4 56788889999999988765433    233333 556666 444544555  567889999


Q ss_pred             HHHHHHHHHHhcccceeeeeeeeecCCc-eEEecceeeccCccccccccccCCCCCCCCCCCCCC
Q psy16949         80 FVTALYNMYVNLYFTYLEINPLVVTNDT-IYILDLAAKLDSTADFICRAQWGNIDYPPPFGRDAY  143 (232)
Q Consensus        80 il~~Ly~lf~e~da~llEINPL~~t~~g-~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~rd~~  143 (232)
                      ++.++|++|.+.|++++|||||+++++| ++|+||||++||||+||||+ +.++       ||++
T Consensus       188 ~~~~~~~~~~~~d~~~iEINPLiv~~dG~vvAlDAri~lDdnA~~r~~~-~~~~-------~d~~  244 (246)
T d1eucb2         188 QIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKD-IFAM-------DDKS  244 (246)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEEETTTEEEECCEEEEECGGGGGGCHH-HHHT-------CCCT
T ss_pred             HHHHHHHHHhcCCccEEeeeceEECCCCCEEEEEeEEeecCcchhcCcc-HHHh-------hCCC
Confidence            9999999999999999999999999987 99999999999999999996 6655       6766

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.75  E-value=1.8e-05  Score=61.42  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             eEEEEecCchhHHHHHHHHHHcCCCC-------------------CCCeeEecCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q psy16949        170 RIWTMVAGGGASVVYSDTICDLGGAS-------------------ELANYGEYSGAPSEQQTYEYAKTILSLMTQEKHPQ  230 (232)
Q Consensus       170 ~Ig~~vnGaGlamat~D~i~~~Gg~~-------------------~pANflD~GG~a~~~~v~~~~~~il~~~~~~~~~~  230 (232)
                      +|+++.||+|.++.+.|.+..+|...                   .+.|.+|++|.++.+.+.++++    .+++||+++
T Consensus         5 rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~----~~~~d~~vd   80 (163)
T d2csua3           5 KVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAK----LLLQDPNVD   80 (163)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHH----HHHHSTTCS
T ss_pred             eEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHH----HHHcCCCcC
Confidence            49999999999999999999999631                   2479999999999988877754    556777764