Psyllid ID: psy16955

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840--
MATSEVAYHRGRTFGPLSSTPYCMDSLGYEVCCPKCDRAVASINRKRSKSECLDSSKWKSSALVMSEPRMLRSSNRPLFTNSNTIYKTEVQRASKLCERCDDSKNSYSVEMEELRRQLRQVGRNHYSPRNESVRSSLVSREFNMTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNAADGFDSSSVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPATSSHRRQESVSAMEVEPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHADRSKDFAL
cccccHHHcccccccccccccccccccccccccccHHHHHHHHHccccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEcccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccEEcccEEEEcccccccccEEEEccccccccccHHHHHHHcccccccccccccEEEEEEEccccccEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcEEEEEccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHccccccHHHHHHHHHHHHHcccccccccc
ccccHEEEcccccccccccccccccccccEEcccccccEEEEEccccccccccccccccccEEEccccHHHcccccccccccccEEEHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccHccHccccccccccccccHHHHHccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccHHHEEHccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHccccccHHccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHcEEEEEEEcccHHHHHHHHHHcccEEccccccEEEEEccccccHHHHcHHHHHHEcccccccEEcHHHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHHHHHHccccccEEEEEEEEEEccccccccEEEEEccHHHccccccEEEEEEEcccEEEcccEEEEEEEEEEEccccEEEEEEcccEEEEEEEEcccccccccccEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHEEEccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccHHccccccHcccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHccccHHHHHHHHHHHHHHHcHHccccc
matsevayhrgrtfgplsstpycmdslgyevccpkcdRAVASInrkrsksecldsskwkssalvmseprmlrssnrplftnsntiYKTEVQRASKLCercddsknsYSVEMEELRRQLRQVgrnhysprnesvRSSLVsrefnmtpspnhsdnrssvrqlrprrfvlpktplnnaadgfdsssvdggsatnTVTVYnvqatppaaplqvepentrvlrnttkyypsntlapsdreprkslgknspshagdtpfpsspsphlsekrsrpqkkpsasskvkckpeprklskpvqdeemegenqflpppatsshrrqesvsamevepilsstvheakvtkpneapnlhpglrlslftnvppyirfsshddqtqlfpspaakhlkwklspitpvVVRKTILNTGYRLVrkssewcgtwgkhmkslsfrtlkesqkinhfpgtfqigRKDRLWKNLLKCMMKYgdkefgftprtyvlpgddkrLRASWERNCGnikwivkpihfwfqpasargigiKVVHKwnqiprkmplvvqkylddpylindtkfdLRLYVLVTSfnplriylydnGLVRFASVKYSANSETLQDRYMHLTNYSINKmsssytqnedaeachghkwTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEhsisqltranqqsrycsyelfgidilldsklkpwllevnispslhssspldlavkgplvqdLFNIVgfhlpekisthnqkefglnhsnllydkrlytpllsneerdkHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFikvfptttshkyfqyfegpryynmLFDAweyahhadrskdfal
matsevayhrgrtfgplsstPYCMDSLGYEVCCPKCDRAVASInrkrsksecldsskwkssalvmseprmlrssnrplftnsntiyKTEVQRASKLCERCDDSKNSYSVEMEELRRQLrqvgrnhysprnesvrssLVSREFnmtpspnhsdnrssvrqlRPRRFVlpktplnnaadgfdsssvdGGSATNTVTVYNVQatppaaplqvepentrvlrnttkyypsntlapsdrepRKSLGknspshagdtpfpsspsphlsekrsrpqkkpsasskvkckpeprklskpvqdeemegenqflpppatssHRRQESVSAMEVEPILSSTVHEAKVTKpneapnlhpglrLSLFTNVPPYIRFSSHDDQTQLFPSPAakhlkwklspitpvvvrktilntgyrlvrkssewcgtwgKHMKSLSFRtlkesqkinhfpgtfqigrkdRLWKNLLKCMMKygdkefgftprtyvlpgddkrLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSisqltranqQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLYTpllsneerDKHVAFVQSESREDYLHSIAetltpddvrHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHADRSKDFAL
MATSEVAYHRGRTFGPLSSTPYCMDSLGYEVCCPKCDRAVASINRKRSKSECLDSSKWKSSALVMSEPRMLRSSNRPLFTNSNTIYKTEVQRASKLCERCDDSKNSYSVEMEELRRQLRQVGRNHYSPRNESVRSSLVSREFNMTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNaadgfdsssvdggsaTNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPATSSHRRQESVSAMEVEPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNIspslhsssplDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHADRSKDFAL
***********RTFGPLSSTPYCMDSLGYEVCCPKCDRAVASI******************************************Y********************************************************************************************************************************************************************************************************************************************************************GLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNY*****************CHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLYTPLLSNE**DKHVAFVQ***REDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHH*********
********HRGRTFGPLSSTPYCMDSLGYEVCCPKCDRAVA********************ALVMSEPRMLRSSNRPLFTNSNTIYKTEVQRAS**************V*MEELRRQLRQV**NH************************************************************GGSATNTVTVYNVQATPPAAPLQVEPENTRVLRN***********************************************************************************************************************************SLFTNVPPYIRFS*************AKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGN**WIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMS**********ACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLP****************************************************IAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHAD***DF**
********HRGRTFGPLSSTPYCMDSLGYEVCCPKCDRAVASIN******************LVMSEPRMLRSSNRPLFTNSNTIYKTEVQRASKLCERCDDSKNSYSVEMEELRRQLRQVGRNHYSPRNESVRSSLVSREFN***************QLRPRRFVLPKTPLNNAADGFDSSSVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLA**********************************************************************QFLPP***************EVEPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHADRSKDFAL
***********RTFGPLSSTPYCMDSLGYEVCCPKCDRAVASINR************W*************RSSNRPLFTNSNTIYKTEVQRASKLCERCDDSKNSYSVE*EELRRQLRQVGR******************************************VLP************SSS*DGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPS**********************S**************************************************************************************PNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEK***********************TPLLS***********QSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHADRS*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATSEVAYHRGRTFGPLSSTPYCMDSLGYEVCCPKCDRAVASINRKRSKSECLDSSKWKSSALVMSEPRMLRSSNRPLFTNSNTIYKTEVQRASKLCERCDDSxxxxxxxxxxxxxxxxxxxxxHYSPRNESVRSSLVSREFNMTPSPNHSDNRSSVRQLRPRRFVLPKTPLNNAADGFDSSSVDGGSATNTVTVYNVQATPPAAPLQVEPENTRVLRNTTKYYPSNTLAPSDREPRKSLGKNSPSHAGDTPFPSSPSPHLSEKRSRPQKKPSASSKVKCKPEPRKLSKPVQDEEMEGENQFLPPPATSSHRRQESVSAMEVEPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLYTPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHADRSKDFAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query842 2.2.26 [Sep-21-2011]
Q80UG8 1193 Tubulin polyglutamylase T yes N/A 0.590 0.416 0.461 1e-138
Q14679 1199 Tubulin polyglutamylase T yes N/A 0.615 0.432 0.464 1e-133
Q09647601 Tubulin polyglutamylase t yes N/A 0.568 0.797 0.404 2e-97
A8X9V4597 Tubulin polyglutamylase t N/A N/A 0.566 0.798 0.398 2e-95
Q8CHB8 1328 Tubulin polyglutamylase T no N/A 0.520 0.329 0.358 2e-79
Q6EMB2 1281 Tubulin polyglutamylase T no N/A 0.520 0.341 0.358 2e-79
Q5R978 1299 Tubulin polyglutamylase T no N/A 0.520 0.337 0.358 3e-79
Q6EEF3 1299 Tubulin polyglutamylase T N/A N/A 0.520 0.337 0.347 5e-77
Q8N841 843 Tubulin polyglutamylase T no N/A 0.452 0.451 0.347 1e-54
A4Q9E8 822 Tubulin polyglutamylase T no N/A 0.456 0.467 0.350 2e-53
>sp|Q80UG8|TTLL4_MOUSE Tubulin polyglutamylase TTLL4 OS=Mus musculus GN=Ttll4 PE=2 SV=3 Back     alignment and function desciption
 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/513 (46%), Positives = 344/513 (67%), Gaps = 16/513 (3%)

Query: 338  PNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTIL 397
            PN    + P L  SLF NV P I F + D++ +  P    + L+WK+S +TP +V++TI 
Sbjct: 560  PNHEKVVRPALIYSLFPNVTPTIYFGTRDERVEKLPWEQRRLLRWKMSTVTPNIVKQTIG 619

Query: 398  NTGYRLVRKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMK 457
             + +++ +++ +W G WG HMKS  FR+++E QK+NHFPG+FQIGRKDRLW+NL +   +
Sbjct: 620  RSHFKISKRNDDWLGCWGHHMKSPGFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQSR 679

Query: 458  YGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKW 517
            +G KEF F P++++LP D K LR +WE +    KWIVKP      PASARGIGI+V+HKW
Sbjct: 680  FGKKEFSFFPQSFILPQDSKLLRKAWESSSRQ-KWIVKP------PASARGIGIQVIHKW 732

Query: 518  NQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSAN 577
            +Q+P++ PL+VQ+YL  PYLI+ +KFDLR+YV VTS++PLRIYL+ +GLVRFAS KYS +
Sbjct: 733  SQLPKRRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPS 792

Query: 578  SETLQDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDS 637
             ++L +++MHLTNYS+NK ++ Y  N D  AC GHKW LK+LW+YL ++  ++  A+ + 
Sbjct: 793  MKSLSNKFMHLTNYSVNKKNTEYQANADETACQGHKWALKALWNYL-SQKGINSDAIWEK 851

Query: 638  IVDVVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSS 697
            I DVV+KT+I  E  ++ L +   +  Y  +ELFG DI+LD  LKPW+LEVNISPSLHS+
Sbjct: 852  IKDVVVKTIISSEPYVTNLLKLYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSN 911

Query: 698  SPLDLAVKGPLVQDLFNIVGFHLP--EKI-----STHNQKEFGLNHSNLLYDKRLYTPL- 749
            SPLD+++KG +++DL N+ GF LP  E I     S  +      +  +   DK   TP  
Sbjct: 912  SPLDISIKGQMIRDLLNLAGFVLPNMEDIISSSSSPSSSSGSSTSLPSSPRDKCQMTPEH 971

Query: 750  LSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSH 809
             + ++  K     Q    +D+  S+ + LTPDDVR LV  EDE ++ G F ++FP+  S 
Sbjct: 972  FTAQKMKKAYYLTQKIPDQDFYASVLDVLTPDDVRVLVEMEDEFSRRGQFERIFPSRISS 1031

Query: 810  KYFQYFEGPRYYNMLFDAWEYAHHADRSKDFAL 842
            +Y ++FE PRY+N+L   WE  +H ++ K   L
Sbjct: 1032 RYLRFFEQPRYFNILTTQWEQKYHGNKLKGVDL 1064
Polyglutamylase which preferentially modifies beta-tubulin and nucleosome assembly proteins NAP1 and NAP2. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q14679|TTLL4_HUMAN Tubulin polyglutamylase TTLL4 OS=Homo sapiens GN=TTLL4 PE=1 SV=2 Back     alignment and function description
>sp|Q09647|TTLL4_CAEEL Tubulin polyglutamylase ttll-4 OS=Caenorhabditis elegans GN=ttll-4 PE=2 SV=3 Back     alignment and function description
>sp|A8X9V4|TTLL4_CAEBR Tubulin polyglutamylase ttll-4 OS=Caenorhabditis briggsae GN=ttll-4 PE=3 SV=1 Back     alignment and function description
>sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus GN=Ttll5 PE=2 SV=3 Back     alignment and function description
>sp|Q6EMB2|TTLL5_HUMAN Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3 Back     alignment and function description
>sp|Q5R978|TTLL5_PONAB Tubulin polyglutamylase TTLL5 OS=Pongo abelii GN=TTLL5 PE=2 SV=1 Back     alignment and function description
>sp|Q6EEF3|TTLL5_CHLAE Tubulin polyglutamylase TTLL5 OS=Chlorocebus aethiops GN=TTLL5 PE=2 SV=2 Back     alignment and function description
>sp|Q8N841|TTLL6_HUMAN Tubulin polyglutamylase TTLL6 OS=Homo sapiens GN=TTLL6 PE=1 SV=2 Back     alignment and function description
>sp|A4Q9E8|TTLL6_MOUSE Tubulin polyglutamylase TTLL6 OS=Mus musculus GN=Ttll6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query842
328717917 987 PREDICTED: tubulin polyglutamylase TTLL4 0.581 0.496 0.651 0.0
328712919545 PREDICTED: tubulin polyglutamylase TTLL4 0.581 0.899 0.641 0.0
242022047 1151 conserved hypothetical protein [Pediculu 0.578 0.423 0.612 0.0
322800809558 hypothetical protein SINV_11277 [Solenop 0.608 0.917 0.572 1e-176
328711459942 PREDICTED: tubulin polyglutamylase TTLL4 0.581 0.520 0.566 1e-173
328711457941 PREDICTED: tubulin polyglutamylase TTLL4 0.581 0.520 0.566 1e-173
383852876558 PREDICTED: tubulin polyglutamylase TTLL4 0.578 0.872 0.580 1e-171
332017587574 Tubulin polyglutamylase TTLL4 [Acromyrme 0.608 0.891 0.570 1e-169
307170543558 Tubulin polyglutamylase TTLL4 [Camponotu 0.608 0.917 0.574 1e-167
328778306568 PREDICTED: tubulin polyglutamylase TTLL4 0.574 0.852 0.592 1e-163
>gi|328717917|ref|XP_001946812.2| PREDICTED: tubulin polyglutamylase TTLL4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/502 (65%), Positives = 404/502 (80%), Gaps = 12/502 (2%)

Query: 345 HPGLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLV 404
           H  LR SLF+N+PPYIRFSSHD + + FP    K LKWKLS ITP+VVR+TI N+G++LV
Sbjct: 393 HSALRPSLFSNMPPYIRFSSHDIKGESFPLSLQKLLKWKLSSITPIVVRRTIQNSGFKLV 452

Query: 405 RKSSEWCGTWGKHMKSLSFRTLKESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFG 464
           RKS++W GTWGKHMKSL F+TL+E QK+NHFPGTFQIGRKDRLWKNL + M+KYG + FG
Sbjct: 453 RKSNDWVGTWGKHMKSLCFKTLREQQKLNHFPGTFQIGRKDRLWKNLHRLMLKYGKENFG 512

Query: 465 FTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKM 524
           F P +Y+LP + + LR  WE+N  + KWIVKP      PASARG GI+V+ KW QIP+K+
Sbjct: 513 FIPTSYILPQEARILRQVWEKNDED-KWIVKP------PASARGTGIRVISKWGQIPKKV 565

Query: 525 PLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDR 584
           PLVVQ+Y+D+PYLINDTKFDLRLY+L+TS NPLR+YLYDNGLVRFASVKYS++  TL DR
Sbjct: 566 PLVVQRYIDNPYLINDTKFDLRLYILITSINPLRLYLYDNGLVRFASVKYSSDLTTLCDR 625

Query: 585 YMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIK 644
           YMHLTNYSIN++SS YTQNEDA+AC GHKWTLKSLW+Y+E E +VDV  L +S+ D+V+K
Sbjct: 626 YMHLTNYSINRLSSQYTQNEDADACQGHKWTLKSLWTYMEKERNVDVKKLWESLEDLVVK 685

Query: 645 TMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAV 704
           T+I GE  +SQ+ R+N  +RY +YELFGID+L D  LKPW+LEVNISPSLHSSSPLDLAV
Sbjct: 686 TVISGESPMSQMCRSNLSNRYNAYELFGIDVLFDEHLKPWILEVNISPSLHSSSPLDLAV 745

Query: 705 KGPLVQDLFNIVGFHLPEKI--STHNQ--KEFGLNHSNLLYDKRLYTPLLSNEERDKHVA 760
           KGPLV+DL N+VG+H+P K+  STHN   K  G+  S+L YDKRLYT  LS +E++K   
Sbjct: 746 KGPLVKDLMNMVGYHIPNKMSQSTHNTLLKMLGVK-SSLCYDKRLYTFNLSAKEKEKQEY 804

Query: 761 FVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRY 820
           +  +ESR +Y+  I + L PDD+RHL++YEDELTQ+GSF KVFPTT+S KY QYFEG RY
Sbjct: 805 YSNAESRVEYIDCILDDLLPDDIRHLIIYEDELTQIGSFQKVFPTTSSFKYHQYFEGSRY 864

Query: 821 YNMLFDAWEYAHHADRSKDFAL 842
           YNMLFDAWE  +  +R +  A+
Sbjct: 865 YNMLFDAWECKYSNNRDEGIAV 886

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328712919|ref|XP_001946359.2| PREDICTED: tubulin polyglutamylase TTLL4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242022047|ref|XP_002431453.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516741|gb|EEB18715.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322800809|gb|EFZ21685.1| hypothetical protein SINV_11277 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328711459|ref|XP_003244544.1| PREDICTED: tubulin polyglutamylase TTLL4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328711457|ref|XP_003244543.1| PREDICTED: tubulin polyglutamylase TTLL4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383852876|ref|XP_003701951.1| PREDICTED: tubulin polyglutamylase TTLL4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332017587|gb|EGI58287.1| Tubulin polyglutamylase TTLL4 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307170543|gb|EFN62758.1| Tubulin polyglutamylase TTLL4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328778306|ref|XP_396662.2| PREDICTED: tubulin polyglutamylase TTLL4-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query842
FB|FBgn00261471071 CG16833 [Drosophila melanogast 0.617 0.485 0.478 1.9e-136
FB|FBgn0031574989 CG3964 [Drosophila melanogaste 0.636 0.541 0.459 8.4e-129
UNIPROTKB|E2RIC2922 TTLL4 "Uncharacterized protein 0.628 0.573 0.437 1.9e-128
UNIPROTKB|E1BKB4 1199 TTLL4 "Uncharacterized protein 0.628 0.441 0.441 3e-127
MGI|MGI:1914784 1193 Ttll4 "tubulin tyrosine ligase 0.610 0.430 0.438 1.2e-125
UNIPROTKB|E9PH58973 TTLL4 "Tubulin polyglutamylase 0.610 0.528 0.443 3.9e-125
UNIPROTKB|Q14679 1199 TTLL4 "Tubulin polyglutamylase 0.610 0.428 0.443 3.9e-125
ZFIN|ZDB-GENE-070912-3131070 ttll4 "tubulin tyrosine ligase 0.576 0.453 0.462 1e-123
RGD|1594742 1193 Ttll4 "tubulin tyrosine ligase 0.712 0.502 0.399 7.2e-123
UNIPROTKB|E7EX20 1135 TTLL4 "Tubulin polyglutamylase 0.399 0.296 0.444 1.9e-102
FB|FBgn0026147 CG16833 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1318 (469.0 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
 Identities = 259/541 (47%), Positives = 349/541 (64%)

Query:   310 SHRRQESVSAMEVEPILSSTVHEAKVTKPNEAPNLHPGLRLSLFTNVPPYIRFSSHDDQT 369
             +H      S       LSS   E  +  P+    L P    SLF  VPPY+ FSS+  + 
Sbjct:   503 THSVDRFSSPQSTPSFLSSQSSEDDLKNPDSL--LVP----SLFPYVPPYLSFSSNTKRG 556

Query:   370 QLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTLKES 429
                P    + LKW+++ I P VVR  + N+G R+++K+++W G WGKH+KS  F+ ++  
Sbjct:   557 PRVPPDLHRVLKWRITNIMPKVVRLILANSGMRMLKKTNDWMGVWGKHLKSPCFKAIRSY 616

Query:   430 QKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCG- 488
             QKINH PG+F+IGRKD  WKNL + M K+ +KEFGF PRTY++P D   LR  W +    
Sbjct:   617 QKINHLPGSFRIGRKDSCWKNLQRQMGKHSNKEFGFMPRTYIIPNDLGALRRHWPKYAQR 676

Query:   489 NIKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLY 548
             N KWI+KP      PASARG GI+V+++W QIP++ PL+VQKY++ P LIN +KFDLRLY
Sbjct:   677 NTKWIIKP------PASARGAGIRVINRWGQIPKRRPLIVQKYIERPLLINGSKFDLRLY 730

Query:   549 VLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDAEA 608
             VLVTS NPLR+++Y NGL RFASVKYSA ++TL DR MHLTNYSINK SS+Y++NED  A
Sbjct:   731 VLVTSVNPLRVFMYHNGLARFASVKYSAKTDTLNDRCMHLTNYSINKFSSNYSKNEDVNA 790

Query:   609 CHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYCSY 668
             CHGHKWT+KSLW+YL     V    L +++  +V++T++ GE+ I+ + RAN +S+Y  +
Sbjct:   791 CHGHKWTIKSLWTYL-ANRGVRTDCLWEALRSLVLRTILAGENGINSMIRANVESKYSCF 849

Query:   669 ELFGIDILLDSKLKPWLLEVNIXXXXXXXXXXDLAVKGPLVQDLFNIVGFHLPEKISTHN 728
             ELFG D++LDS L PWLLEVNI          D  VK PLVQ + N   +++P K+S   
Sbjct:   850 ELFGFDVILDSDLVPWLLEVNISPSLHSELPLDAHVKAPLVQGVLNTALYNVPPKLSLDK 909

Query:   729 QKEFGLNHS-----NLLYDKRLYTPLLSNEERDKHVAFVQS--ESREDYLHSIAETLTPD 781
             QKE     S      + YDKRLY   LS EE+ KH  F +   E R +Y+ +I   LTPD
Sbjct:   910 QKELAAEFSFPPGTQMCYDKRLYINYLSREEKIKHNTFTRKSMEDRNEYVDAILNNLTPD 969

Query:   782 DVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFDAWEYAHHADRSKDFA 841
             DVR L++ EDEL +     ++FPT  +HKY +Y + PRYYN L DAWE  +  +R++  A
Sbjct:   970 DVRCLIIAEDELARCAPLERIFPTDQTHKYLKYNDTPRYYNRLLDAWESRYANNRTEGIA 1029

Query:   842 L 842
             L
Sbjct:  1030 L 1030
GO:0004835 "tubulin-tyrosine ligase activity" evidence=ISS
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0042060 "wound healing" evidence=IMP
FB|FBgn0031574 CG3964 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIC2 TTLL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BKB4 TTLL4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1914784 Ttll4 "tubulin tyrosine ligase-like family, member 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E9PH58 TTLL4 "Tubulin polyglutamylase TTLL4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q14679 TTLL4 "Tubulin polyglutamylase TTLL4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-313 ttll4 "tubulin tyrosine ligase-like family, member 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1594742 Ttll4 "tubulin tyrosine ligase-like family, member 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E7EX20 TTLL4 "Tubulin polyglutamylase TTLL4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.25LOW CONFIDENCE prediction!
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query842
pfam03133291 pfam03133, TTL, Tubulin-tyrosine ligase family 1e-103
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family Back     alignment and domain information 
 Score =  321 bits (824), Expect = e-103
 Identities = 141/290 (48%), Positives = 184/290 (63%), Gaps = 19/290 (6%)

Query: 430 QKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGN 489
           Q +NHFPG+++I RKD LWKN+ K       ++F F PRT++LP D       +E N  N
Sbjct: 9   QALNHFPGSYEITRKDLLWKNI-KRQPCDFGRKFDFLPRTFILPTDLAEFVDYFEDNERN 67

Query: 490 IKWIVKPIHFWFQPASARGIGIKVVHKWNQIPRKM---PLVVQKYLDDPYLINDTKFDLR 546
             WIVKP       ASARG GI++ +  +QI +++   PLVVQKY++ P LI+  KFD+R
Sbjct: 68  -TWIVKP------SASARGRGIRITNDLSQILKQIQSRPLVVQKYIERPLLIDGRKFDIR 120

Query: 547 LYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINKMSSSYTQNEDA 606
           LYVLVTS NPLR+Y+Y  GL+RFASVKYS +   L D  MHLTNYSI K SSS   NED 
Sbjct: 121 LYVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKSSS--LNEDY 178

Query: 607 EACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYC 666
              +GHKW+L + W YLE     D   +   I  ++IKT++  E   S+L   N Q  Y 
Sbjct: 179 NEPNGHKWSLFNFWKYLEE---KDKEEIWLEIESIIIKTILAAEVEASRL---NVQPLYN 232

Query: 667 SYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIV 716
            +EL+G D ++D  LKPWLLEVN SPSLHS++ LD  +K  L+ D+ N V
Sbjct: 233 CFELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQLIDDVLNSV 282

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 842
KOG2156|consensus662 100.0
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 100.0
KOG2157|consensus497 100.0
KOG2158|consensus565 100.0
KOG2155|consensus631 99.97
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 99.85
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 98.69
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 98.61
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 98.55
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 98.54
PLN02941328 inositol-tetrakisphosphate 1-kinase 98.48
PRK10446300 ribosomal protein S6 modification protein; Provisi 98.48
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 98.41
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 98.4
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 98.38
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 98.38
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 98.38
PRK14571299 D-alanyl-alanine synthetase A; Provisional 98.37
PRK14569296 D-alanyl-alanine synthetase A; Provisional 98.26
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 98.25
PRK14572347 D-alanyl-alanine synthetase A; Provisional 98.21
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 98.18
PRK14570364 D-alanyl-alanine synthetase A; Provisional 98.14
PRK05246316 glutathione synthetase; Provisional 98.04
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 97.99
PLN02257434 phosphoribosylamine--glycine ligase 97.91
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 97.89
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 97.86
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 97.83
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 97.62
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 97.61
PRK12458338 glutathione synthetase; Provisional 97.55
PRK07206416 hypothetical protein; Provisional 97.51
PRK06849389 hypothetical protein; Provisional 97.5
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 97.5
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 97.49
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 97.45
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 97.45
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 97.45
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 97.38
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 97.38
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 97.33
PRK14016 727 cyanophycin synthetase; Provisional 97.3
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 97.29
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 97.27
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 97.26
PRK08462445 biotin carboxylase; Validated 97.25
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 97.24
PRK05586447 biotin carboxylase; Validated 97.24
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 97.23
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 97.19
PRK06524493 biotin carboxylase-like protein; Validated 97.15
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 97.13
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 97.09
PRK02186 887 argininosuccinate lyase; Provisional 97.08
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 97.06
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 97.01
PRK07178472 pyruvate carboxylase subunit A; Validated 96.96
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 96.94
PRK12999 1146 pyruvate carboxylase; Reviewed 96.92
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 96.92
PLN02948 577 phosphoribosylaminoimidazole carboxylase 96.83
PRK08654499 pyruvate carboxylase subunit A; Validated 96.78
KOG2158|consensus 565 96.65
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 96.65
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 96.62
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 96.57
PRK052941066 carB carbamoyl phosphate synthase large subunit; R 96.54
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 96.53
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 96.45
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 96.22
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 95.91
PLN027351102 carbamoyl-phosphate synthase 95.85
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 95.69
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 95.56
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 95.5
PLN02735 1102 carbamoyl-phosphate synthase 95.44
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 95.2
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 94.76
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 94.67
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 94.51
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 93.51
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 92.69
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 92.29
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 91.98
COG2232389 Predicted ATP-dependent carboligase related to bio 91.94
KOG3895|consensus488 88.68
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 87.57
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 85.16
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 83.14
>KOG2156|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-115  Score=958.37  Aligned_cols=481  Identities=53%  Similarity=0.936  Sum_probs=454.5

Q ss_pred             ccccCCCCCCCCeEEeecCCCCCCCCCcccccceEEEecCCchHHHHHHHHhcCCEEecCCCCeEEEEcccCCchhhhcc
Q psy16955        347 GLRLSLFTNVPPYIRFSSHDDQTQLFPSPAAKHLKWKLSPITPVVVRKTILNTGYRLVRKSSEWCGTWGKHMKSLSFRTL  426 (842)
Q Consensus       347 ~l~~Slf~~~pp~i~F~~~~~~~~~~p~~~rk~L~wk~s~~~~~lVr~~L~~~GF~~v~~~~dW~~~W~~~~k~~~~~~L  426 (842)
                      -++||+|++|||||.|.+++++++++|++++..|+|+.+..++.+|+.+|.++||++++..++|+++|++|+++..|+.|
T Consensus       164 ~v~PSlfp~VpP~i~f~s~~~k~~k~p~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk~n~dw~g~Wg~h~ksp~fr~i  243 (662)
T KOG2156|consen  164 EVLPSLFPRVPPTILFDSSADKVPKPPPPLHAVLKWKPTEVMPKVVRQVLANSGFKIVKVNDDWMGVWGHHLKSPSFRAI  243 (662)
T ss_pred             eechhhcCCCCCeeeeccccccCCCCChhHHHHhccCCcchhHHHHHHHHHhcccEEecccchHHHHhhhhcCCchhhhh
Confidence            45569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCeecccCCCCcccchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCC
Q psy16955        427 KESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASA  506 (842)
Q Consensus       427 ~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gs  506 (842)
                      ++||+||||||++.|||||.||++|.+++.+||.++|.|+|+||+||.|.++|+++|+++.. ..|||||      ++++
T Consensus       244 r~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nas-r~wIVkp------pasa  316 (662)
T KOG2156|consen  244 RSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNAS-RLWIVKP------PASA  316 (662)
T ss_pred             hhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCcc-ccEEecC------cccc
Confidence            99999999999999999999999999999999999999999999999999999999998655 4599999      9999


Q ss_pred             CCccEEEEccccccCCCCcceeeecccCcccCCCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCcce
Q psy16955        507 RGIGIKVVHKWNQIPRKMPLVVQKYLDDPYLINDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYM  586 (842)
Q Consensus       507 RGrGI~vi~~l~qI~~~~~~VVQkYIenPLLIdGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~  586 (842)
                      ||.||.++++|++++++++.|||+||++|+||+|.|||+|+||+|||++|||||+|++||+|||+++|++..+++.|+||
T Consensus       317 Rg~gIrv~~kw~q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKym  396 (662)
T KOG2156|consen  317 RGIGIRVINKWSQFPKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYM  396 (662)
T ss_pred             cCcceEeccchhhCCCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccCCCcCCCCccccccCCcccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCCC
Q psy16955        587 HLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIVDVVIKTMICGEHSISQLTRANQQSRYC  666 (842)
Q Consensus       587 HLTNySINK~s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~n  666 (842)
                      |||||++||.+. |..+++.+.|+|+||++.++|.+|.++ |+|.++||.+|+++|++||++.|..|..+++.+...+..
T Consensus       397 hltnYs~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~q-Gvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~  474 (662)
T KOG2156|consen  397 HLTNYSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDNQ-GVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYS  474 (662)
T ss_pred             Eeccccccccch-hhhhhHHhhcCCchhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCch
Confidence            999999999988 999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             ceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCCCcccccccccccccccccccccccc
Q psy16955        667 SYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPEKISTHNQKEFGLNHSNLLYDKRLY  746 (842)
Q Consensus       667 cFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p~~~~~~~~~~~~~~~~~~c~~k~l~  746 (842)
                      |||||||||+||++++|||||||.+|||++.+++|-.+|.+||.++|+|+|+..|.+.+..  +.+....+    .+++.
T Consensus       475 CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p~~~s~~--~~a~~~~s----t~ri~  548 (662)
T KOG2156|consen  475 CFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVPPKPSTD--SLAELSLS----TKRIT  548 (662)
T ss_pred             hhhhhcceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecCCCccch--hhhhhCCC----ccccc
Confidence            9999999999999999999999999999999999999999999999999999988442221  11222222    25677


Q ss_pred             CCCCCHHHHhhhhhhhcccchHHHHHhhhcCCCHHHHHHHHHHHHHHhcCCCcEEeCCCCCccccccccCCCChHhHHHH
Q psy16955        747 TPLLSNEERDKHVAFVQSESREDYLHSIAETLTPDDVRHLVVYEDELTQLGSFIKVFPTTTSHKYFQYFEGPRYYNMLFD  826 (842)
Q Consensus       747 ~~~lS~ee~~K~~~~~~~~~~~~~~~~il~~Lt~~d~~~L~~~edE~~rrG~F~RIFPt~~s~~Y~~~fe~~ry~N~LL~  826 (842)
                      +.+++.|++.|+..|++....++.+..||++|||+|+++|+++|||+.|+|.|+||||+..++.|.+||+.+||+|+|++
T Consensus       549 ~~~~~~e~l~K~~~~t~~~~dq~ey~~il~~LtpddvR~Lv~aedEl~r~~~~erIFPt~~t~~yl~y~~~~ry~n~ll~  628 (662)
T KOG2156|consen  549 TDKLTREELIKHAAHTCKIEDQEEYVLILDNLTPDDVRCLVEAEDELARRGDFERIFPTAITSPYLKYVEAPRYYNILLD  628 (662)
T ss_pred             cccccHHHHHHHHHHhhcccchHHHHHHHhcCChHHHHHHHHHHHHHHhcccHhhhCCCcCccHHHHHhhhhHHHHHHHH
Confidence            88999999999999988655555566999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCccccccC
Q psy16955        827 AWEYAHHADRSKDFAL  842 (842)
Q Consensus       827 ~W~~~~~~~r~~gi~~  842 (842)
                      +|+.+|.+||.+||+|
T Consensus       629 aWetry~~Nr~~Gi~l  644 (662)
T KOG2156|consen  629 AWETRYAHNRCQGIAL  644 (662)
T ss_pred             HHHHHHhcchhhhHHH
Confidence            9999999999999985

>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>KOG2155|consensus Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>KOG3895|consensus Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query842
4i4t_F384 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-15
3tig_A380 Tubulin Tyrosine Ligase Length = 380 1e-14
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 384 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 36/214 (16%)
Query: 488 GNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI-----PRKMPLVVQKYLDDPYLI--ND 540
           GN+ WI K        A A+G GI +  + +++      +    V+QKYL+ P L+    
Sbjct: 144 GNV-WIAK------SSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGH 196
Query: 541 TKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMHLTNYSINK-MSSS 599
            KFD+R +VLV       IYLY  G++R +S  Y  NS   QD+  HLTN+ I K  S +
Sbjct: 197 RKFDIRSWVLVDHL--YNIYLYREGVLRTSSEPY--NSANFQDKTCHLTNHCIQKEYSKN 252
Query: 600 YTQNEDAEACHGHKWTLKSLWSYLETEHHVDVAALQDSIV----DVVIKTMICGEHSISQ 655
           Y + E+     G++   +    YL    +     L++SI+     ++   ++C E +IS 
Sbjct: 253 YGRYEE-----GNEMFFEEFNQYLMDALN---TTLENSILLQIKHIIRSCLMCIEPAIS- 303
Query: 656 LTRANQQSRYCSYELFGIDILLDSKLKPWLLEVN 689
                +   Y S++LFG D ++D +LK WL+EVN
Sbjct: 304 ----TKHLHYQSFQLFGFDFMVDEELKVWLIEVN 333
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase Length = 380 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query842
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 9e-84
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380 Back     alignment and structure
 Score =  271 bits (695), Expect = 9e-84
 Identities = 85/383 (22%), Positives = 155/383 (40%), Gaps = 61/383 (15%)

Query: 379 HLKWKLSPITPVVVRKTILNTGYRLVRKSSE-WCGTWGKHMK---SLSFRTLKESQKINH 434
            ++ + S +   V +  + +  ++ +++ +  +    G+  +             Q +N+
Sbjct: 8   VVRDENSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNY 67

Query: 435 FPGTFQIGRKDRLWKNL-----LKCMMKYGDKEFGFTPRTYVLPGDD------------- 476
           + G  ++ RK  L K +     L     +  + +   P     P                
Sbjct: 68  YRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPR 127

Query: 477 --------KRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQI-----PRK 523
                          E   GN+ WI K        + A+G GI +     ++      + 
Sbjct: 128 TDEREEFRSSFNKKKENEEGNV-WIAKS------SSGAKGEGILISSDATELLDFIDNQG 180

Query: 524 MPLVVQKYLDDPYLINDT--KFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETL 581
              V+QKYL+ P L+     KFD+R +VLV +     IYLY  G++R +S  YS  +   
Sbjct: 181 QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTN--F 236

Query: 582 QDRYMHLTNYSINKMSSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDVA-ALQDSIVD 640
           QD   HLTN+ I K  S      +     G++   +    YL T  ++++  ++   I +
Sbjct: 237 QDMTSHLTNHCIQKEHSKNYGRYE----EGNEMFFEEFNQYLVTSLNINLENSILCQIKE 292

Query: 641 VVIKTMICGEHSISQLTRANQQSRYCSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPL 700
           ++   + C E +IS      +   Y S++LFG D ++D  LK WL+EVN +P+      L
Sbjct: 293 IIRVCLSCLEPAIS-----TKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACA--QKL 345

Query: 701 DLAVKGPLVQDLFNIVGFHLPEK 723
              +   +V    + V F L E+
Sbjct: 346 YAELCKGIVDLAISSV-FPLNEE 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query842
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 100.0
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 98.67
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 98.6
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 98.6
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 98.56
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 98.53
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 98.53
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 98.51
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 98.49
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 98.45
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 98.44
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 98.43
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 98.42
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 98.4
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 98.38
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 98.35
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 98.29
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 98.26
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 98.24
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 98.18
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 98.15
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 98.15
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.14
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.08
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 98.05
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 97.97
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 97.94
3ouz_A446 Biotin carboxylase; structural genomics, center fo 97.9
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 97.86
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 97.85
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 97.84
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 97.8
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 97.78
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 97.74
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 97.73
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 97.73
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 97.72
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 97.7
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 97.67
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 97.67
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 97.66
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 97.63
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 97.62
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 97.56
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 97.52
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 97.51
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 97.48
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 97.43
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 97.42
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 97.41
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 97.35
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 97.32
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 97.28
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 97.27
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 97.25
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 97.22
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 97.08
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 97.04
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 97.0
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 96.89
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 96.59
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 96.46
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 96.23
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 96.17
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 96.09
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 95.9
3n6x_A474 Putative glutathionylspermidine synthase; domain o 95.83
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 95.15
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 94.05
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 91.3
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-64  Score=554.22  Aligned_cols=306  Identities=29%  Similarity=0.484  Sum_probs=231.1

Q ss_pred             chHHHHHHHHhcC-CEEec-CCCCeEEEEcccCCchhhhcc----CcCCeecccCCCCcccchHHHHHHHHHHHHHcCCC
Q psy16955        388 TPVVVRKTILNTG-YRLVR-KSSEWCGTWGKHMKSLSFRTL----KESQKINHFPGTFQIGRKDRLWKNLLKCMMKYGDK  461 (842)
Q Consensus       388 ~~~lVr~~L~~~G-F~~v~-~~~dW~~~W~~~~k~~~~~~L----~p~QkVNHFPgs~~LtrKd~L~rnL~rm~kk~g~~  461 (842)
                      -..+|+++|.+.| |+++. ++.+|+++|++... ..|..|    .++|+||||||+++||||+.|+++|++++  .+..
T Consensus        16 vy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~-~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~--~~~~   92 (380)
T 3tig_A           16 VYAEVAKILLASGQWKRLKRDNPKFNLMLGERNR-LPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP--ELTE   92 (380)
T ss_dssp             HHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSS-CCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH--HHHT
T ss_pred             HHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCC-CCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh--hccc
Confidence            3589999999999 88775 46789999987542 224444    56899999999999999999999999853  3567


Q ss_pred             CCCeeeccccC-chh-----------------------HHHHHHHhhh---cCCcceEEEcCCCccCCCCCCCCccEEEE
Q psy16955        462 EFGFTPRTYVL-PGD-----------------------DKRLRASWER---NCGNIKWIVKPIHFWFQPASARGIGIKVV  514 (842)
Q Consensus       462 ~~~FlP~TfiL-P~d-----------------------~~~f~~~~~k---~~~~~~WIvKP~~~~~~~~gsRGrGI~vi  514 (842)
                      .++|+|+||+| |.+                       +.+|++++.+   .+.++.||+||      .+++||+||+++
T Consensus        93 ~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP------~~~srG~GI~l~  166 (380)
T 3tig_A           93 TCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKS------SSGAKGEGILIS  166 (380)
T ss_dssp             TCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEE------SCC----CCBCC
T ss_pred             ccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeC------CccCCCCCEEEe
Confidence            89999999999 864                       4568777754   46789999999      999999999999


Q ss_pred             ccccccC-----CCCcceeeecccCcccC--CCCeeEEEEEEEEeecCCceEEEEcCceEeeecccCCCCCCcccCccee
Q psy16955        515 HKWNQIP-----RKMPLVVQKYLDDPYLI--NDTKFDLRLYVLVTSFNPLRIYLYDNGLVRFASVKYSANSETLQDRYMH  587 (842)
Q Consensus       515 ~~l~qI~-----~~~~~VVQkYIenPLLI--dGrKFDLRvYVLVTS~dPLRIYlY~eGLVRfAt~kYs~~~~nl~d~~~H  587 (842)
                      ++++++.     ....+|||+||+|||||  +|+|||||+||||||  ||+||+|++|++|||+++|+.  .+++|.++|
T Consensus       167 ~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~--~~~~~~~~H  242 (380)
T 3tig_A          167 SDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD--TNFQDMTSH  242 (380)
T ss_dssp             SCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC----------------
T ss_pred             CCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc--cchhhhhhh
Confidence            9988874     35789999999999999  999999999999998  999999999999999999984  578899999


Q ss_pred             ecccccccC-CCcCCCCccccccCCcccchHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhhhhhhhhHhhhcccCCC
Q psy16955        588 LTNYSINKM-SSSYTQNEDAEACHGHKWTLKSLWSYLETEHHVDV-AALQDSIVDVVIKTMICGEHSISQLTRANQQSRY  665 (842)
Q Consensus       588 LTNySINK~-s~nY~~~ed~~~~~G~KWSL~~L~~yLe~~~Gid~-~~Lw~~IkdiIiKTIlA~e~~l~~~~~~~~~~r~  665 (842)
                      |||++|||+ +++|...+     .|++|++++|++||++.+|.+. +.||.+|+++|+++++|+++.+...     ..+.
T Consensus       243 LTN~~iqk~~~~~y~~~~-----~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~-----~~~~  312 (380)
T 3tig_A          243 LTNHCIQKEHSKNYGRYE-----EGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTK-----YLPY  312 (380)
T ss_dssp             -------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCT-----TSSS
T ss_pred             cccccccccccccccccc-----CCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCC
Confidence            999999996 45676433     5789999999999998778776 5899999999999999998876432     1246


Q ss_pred             CceeeeeeeEEecCCCceEEEEeecCCCCCCCChhhHHhHHHHHHHHHHHcCccCCC
Q psy16955        666 CSYELFGIDILLDSKLKPWLLEVNISPSLHSSSPLDLAVKGPLVQDLFNIVGFHLPE  722 (842)
Q Consensus       666 ncFELfGfDfLLDedLKPWLLEVN~sPSL~s~SplD~~VK~~LI~D~L~L~gi~~p~  722 (842)
                      +|||+||+|||||++++|||||||.+|++..      .+..+|++++|+++...+..
T Consensus       313 ~~FEl~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~iavdp~f~  363 (380)
T 3tig_A          313 HSFQLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLAISSVFP  363 (380)
T ss_dssp             EECEEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHTTTTTSC
T ss_pred             ceEEEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHhcccccC
Confidence            7999999999999999999999999999974      38899999999998876443
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query842
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 98.75
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 98.6
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 98.53
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 98.41
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 98.33
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 98.0
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 97.98
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 97.96
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 97.89
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 97.83
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 97.52
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 97.47
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 96.32
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 95.97
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 95.85
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 95.32
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 94.02
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=8.5e-09  Score=100.63  Aligned_cols=89  Identities=16%  Similarity=0.297  Sum_probs=56.8

Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCeeeccccCchhHHHHHHHhhhcCCcceEEEcCCCccCCCCCCCCccEEEEccccccC
Q psy16955        442 GRKDRLWKNLLKCMMKYGDKEFGFTPRTYVLPGDDKRLRASWERNCGNIKWIVKPIHFWFQPASARGIGIKVVHKWNQIP  521 (842)
Q Consensus       442 trKd~L~rnL~rm~kk~g~~~~~FlP~TfiLP~d~~~f~~~~~k~~~~~~WIvKP~~~~~~~~gsRGrGI~vi~~l~qI~  521 (842)
                      .+|-..+..+..+.+..+...+.+...++.-.  ..   ...  ...+..+|+||      ..|+.|+||.++++..++.
T Consensus        10 ~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~~--~~---~~~--~~~~~PvVvKP------~~g~~g~Gv~~v~~~~~l~   76 (206)
T d1i7na2          10 CDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPN--HR---EML--TLPTFPVVVKI------GHAHSGMGKVKVENHYDFQ   76 (206)
T ss_dssp             SSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS--GG---GGS--SCCCSSEEEEE------SSCSTTTTEEEECSHHHHH
T ss_pred             cCcHHHHHHHHHHhcccCCCccceeecccccc--hh---HHh--hhcCCceEEec------CCCCCCCCeEEEeecchhh
Confidence            45533334444445555655555555554432  11   111  12345799999      9999999999998865542


Q ss_pred             --------CCCcceeeecccCcccCCCCeeEEEEEEE
Q psy16955        522 --------RKMPLVVQKYLDDPYLINDTKFDLRLYVL  550 (842)
Q Consensus       522 --------~~~~~VVQkYIenPLLIdGrKFDLRvYVL  550 (842)
                              ....++||+||+       .++|+|+.|+
T Consensus        77 ~~~~~~~~~~~~~~vqe~I~-------~~~dirv~vi  106 (206)
T d1i7na2          77 DIASVVALTQTYATAEPFID-------AKYDIRVQKI  106 (206)
T ss_dssp             HHHHHHHHHTCCEEEEECCC-------EEEEEEEEEE
T ss_pred             hHHHHHhhccCeEEEEEeec-------ccceEEEEEE
Confidence                    246799999995       2479999876
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure