Psyllid ID: psy16975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73
Protein Sequence
MARDHHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEYLPPQNRKEERQGRRKPAVPRTNMCLEKTSPPGGNQTPRPNAYKAGALPTILTRKHAVILCSDGKNETFQGSGSQVSKRSKVSDLSSETETLKPSGPLRNEADLSWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKASYNGAPT
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccccccccccEEEEEEEEEEEEEcccccEEEEcccccccccEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccccccccEEEEccEEEEEEcccccccccccccccccEEccccccccccccccccccEEEEcccHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHccccccccccccccccHHHHHHcccccccEEEEEEEEccccccccHHHHHcccccccccccccccEEEEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEEEEcccccccccccccEEEEccccEEcccHHHHHHcccccccccEEEEEEEEccccccccEEEcccccccccccEEEEcccccEEEEEEEEEcccccccccHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccEEEEEEEEEcccEEEEEEHHHHccccEEEEEEEcccccccccccEEEEccccccccccccccEEEEcccEEEEEcccEEcccEEEEEcccccEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHcccccccEcccEEEEEEEEEEEcccccccEEEEcccEEcccccHHEEccccEEEcccccccccccHHHHHccccccccccccccccccccccccccccccHHHccccccEEccccEEEEEcccccccEcccccccccccccccHHHHHcccccccccEEEEccccEEEEEEcEEEcccccccccHHHHcccEEEEEEccccccccccccccccEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHcccEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccEEEcccccccccccHHHHHHHcHccccHHHHHHHccccccEEEEEEEEEEccHHHHHHHHHHHHHccHHHHHHHcccEEEEEEEccHHHHcccccHHHccccccEEEEcccccccccccccccccccccHHHHcccccccccccEEEEEEcccEEEEEEcccccEEcccccccccccEEEEccccccccccEEEcccccccccEEEEEccccEEEEEcccccccccccccHHHHHHHHHHHHHHcHHHccccEEHEEccccccccccEEEEEEccccccccEEEEEEEccccccHHHHHccccccEEEEEEcccHHHHHccccEEEEccccccHHccccccEEccccEEEEEEEEcccccccEEEcccccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MARDHHFGVWLIEEFLIGLasgshikvpgvemipveafrlvphssgsyivvdgevldygpiqaeifpgliertvtteylppqnrkeerqgrrkpavprtnmclektsppggnqtprpnaykagalptiltRKHAVILcsdgknetfqgsgsqvskrskvsdlssetetlkpsgplrneadlswEVSVSVQQVtqtdekvtpnleikQLNVqvtkvnpksqtnatqngdkkglffiptqscpanpkvmgsnhKVAILGAGIIGLSTALELqrrfpncdvtviadkfnmdttsdgaaglfepspnfmgpdlettKEWIRYSYDHYAGllsencgvqvinGYNLAksekqcaenhylkpvlpvykrmseeelaeigpgdwkygIYMStlvipnriflpwcmqkdgpsnlgerpstlsVELYhynrdsltvvrgplhekvssgprtCAMQRAMQHDHyagllsencgvqvinGYNLAksekqcaenhylkpvlpvykrmseeelaeigpgdwkygIYMStlvipnriflpwcmQKNFASLVRLAGAyiipsygglvtlggtqdygnarlgvdrfdsraiLNRTAAVRPEILAAPVEKvwvglrpyrhhvrVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGseyntifnctglgartlcndmhvipvrgqTIRIvhnyghggygvtsapgsarCAVSVFEQshkasyngapt
Flexible Loop (DISEMBL)
MARDHHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIfpgliertvtteylppqnrkeerqgrrkpavprtnmclektsppggnqtprpnAYKAGALPTILTRKHAVILCSDGknetfqgsgsqvskrskvsdlssetetlkpsgplrneadlSWEVSVSVQQVTqtdekvtpnleikqlnvqvtkvnpksqtnatqngdkkgLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNrtaavrpeilaapvekvwvgLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQshkasyngapt
Low Complexity Region (SEG)
MARDHHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEYLPPQNRKEERQGRRKPAVPRTNMCLEKTSPPGGNQTPRPNAYKAGALPTILTRKHAVILCSDGKNETFQGSGSQVSKRSKVSDLSSETETLKPSGPLRNEADLSWEvsvsvqqvtqtDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKASYNGAPT
Disordered region (IsUnstruct)
*****HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEY*******************************************AGALPTILTRKHAVILCS*******************************************************************************************GLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE***NFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK************LSVELYHYNRDSLTVVRGPLH********TCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVF*************
Disordered Region (DISOPRED)
********VWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV**********************************************KAGALPTILTRKHAVILCSDGK**************************LKPSGPLRNEADLSWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVN***********DKKGLFFIPTQS************KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKASYNG***
Disordered Region (DISEMBL)
MARDHHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEYLPP***************PRTNMCLEKTSPPGGNQTPRPNAYKAGALPTILTRKHAVILCSDGKNE***************************SGPLRNEADLSWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS**********
Disordered Region (DISPRO)
****HHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEYLPPQN***************************GNQTPRPNAYKAGALPTILTRKHAVILCSD***************************TLKPSGPLRNEADLSWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHK*SY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARDHHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEYLPPQNRKEERQGRRKPAVPRTNMCLEKTSPPGGNQTPRPNAYKAGALPTILTRKHAVILCSDGKNETFQGSGSQVSKRSKVSDLSSETETLKPSGPLRNEADLSWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKASYNGAPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	728	2.2.26 [Sep-21-2011]
P31228	341	D-aspartate oxidase OS=Bo	yes	N/A	0.199	0.425	0.307	2e-16
Q99489	341	D-aspartate oxidase OS=Ho	yes	N/A	0.199	0.425	0.307	6e-16
Q9Z302	346	D-amino-acid oxidase OS=C	yes	N/A	0.390	0.820	0.249	5e-15
Q922Z0	341	D-aspartate oxidase OS=Mu	yes	N/A	0.197	0.422	0.315	1e-14
P18894	345	D-amino-acid oxidase OS=M	no	N/A	0.390	0.823	0.251	2e-14
O35078	346	D-amino-acid oxidase OS=R	no	N/A	0.390	0.820	0.256	2e-14
Q95XG9	322	D-amino-acid oxidase 2 OS	yes	N/A	0.196	0.444	0.331	1e-13
A3KCL7	341	D-aspartate oxidase OS=Su	yes	N/A	0.199	0.425	0.294	2e-13
Q9Z1M5	347	D-amino-acid oxidase OS=C	no	N/A	0.391	0.821	0.247	3e-13
P00371	347	D-amino-acid oxidase OS=S	no	N/A	0.391	0.821	0.247	8e-13

>sp|P31228|OXDD_BOVIN D-aspartate oxidase OS=Bos taurus GN=DDO PE=1 SV=2

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 90/153 (58%), Gaps = 8/153 (5%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
           ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +    ++ 
Sbjct: 5   RIAVVGAGVMGLSTAVCISKMVPGCSITVISDKFTPETTSDVAAGMLIP-PTYPDTPIQK 63

Query: 312 TKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
            K+W + ++DH   ++    +E+ GV +++G+ + +S     E  Y   V+  +++M+++
Sbjct: 64  QKQWFKETFDHLFAIVNSAEAEDAGVILVSGWQIFQS-IPTEEVPYWADVVLGFRKMTKD 122

Query: 368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           EL +       +G   +TL      +LPW  ++
Sbjct: 123 ELKKF--PQHVFGHAFTTLKCEGPAYLPWLQKR 153

Bos taurus (taxid: 9913)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 1

>sp|Q99489|OXDD_HUMAN D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 87/153 (56%), Gaps = 8/153 (5%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
           ++A++GAG++GLSTA+ + +  P C VT+I+DKF  DTTSD AAG+  P   +    + T
Sbjct: 5   RIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHT 63

Query: 312 TKEWIRYSYDHYAGLLSE----NCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
            K+W R +++H   + +     + GV +++G+ + +S     E  +   V+  +++M+E 
Sbjct: 64  QKQWFRETFNHLFAIANSAEAGDAGVHLVSGWQIFQSTPT-EEVPFWADVVLGFRKMTEA 122

Query: 368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           EL +     + +G   +TL      +LPW  ++
Sbjct: 123 ELKKF--PQYVFGQAFTTLKCECPAYLPWLEKR 153

Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9Z302|OXDA_CRIGR D-amino-acid oxidase OS=Cricetulus griseus GN=DAO PE=2 SV=1

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 146/365 (40%), Gaps = 81/365 (22%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCD---VTVIADKFNMDTTSDGAAGLFEPSPNFMGPD 308
           +V ++GAG+IGLSTAL +  RF       + + AD+F   TTSD AAG ++P      P 
Sbjct: 2   RVVVIGAGVIGLSTALCIHERFSPVQPLHMKIYADRFTPFTTSDVAAGFWQPY--LSDPR 59

Query: 309 LETTKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRM 364
                EW + ++D+    +    +E  G+ +I+GYNL K E     + + +  +  ++++
Sbjct: 60  NPQEVEWNQQTFDYLLSHIHSPNAEKMGLSLISGYNLFKEE---VPDPFWRNTVLGFRKL 116

Query: 365 SEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDS 424
           +  E+ +I P D+ YG + ++L +  + +LPW         L ER +   V+L+H   +S
Sbjct: 117 TPREM-DIFP-DYGYGWFNTSLTLEGKSYLPW---------LTERLTERGVKLFHRKVES 165

Query: 425 LTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHY 484
                    E+V+ G     +               NC   V  G   A +  Q      
Sbjct: 166 F--------EEVARGGADVII---------------NC-TGVWAGALQADTSLQPGRGQI 201

Query: 485 LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYI 544
           ++   P  K         I   D + GIY S  +IP                        
Sbjct: 202 IQVEAPWMKHF-------ILTHDPRLGIYNSPYIIPG----------------------- 231

Query: 545 IPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH 604
                  VTLGG    GN        D   I      + P +  A +     G RP RH 
Sbjct: 232 ----SKTVTLGGVFQLGNWNELNSVHDHNTIWKSCCKLEPTLKNAKIVGELTGFRPVRHQ 287

Query: 605 VRVER 609
           VR+++
Sbjct: 288 VRLKK 292

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Cricetulus griseus (taxid: 10029)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|Q922Z0|OXDD_MOUSE D-aspartate oxidase OS=Mus musculus GN=Ddo PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 8/152 (5%)

Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETT 312
           +A++GAG+IGLSTA  + +  P C VTVI+D+F  DTTS+ AAG+  P      P + T 
Sbjct: 6   IAVVGAGVIGLSTAACISQLVPGCTVTVISDRFTPDTTSNVAAGMLIPHTCADTP-VPTQ 64

Query: 313 KEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEE 368
           K W R +++H + +     + + GV +++G+ + +S     E  +   V+  +++M+E E
Sbjct: 65  KRWFRETFEHLSEIAKSAEAADAGVHLVSGWQIFRSVP-AEEVPFWADVVLGFRKMTEAE 123

Query: 369 LAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           L       + +G   +TL      +LPW  ++
Sbjct: 124 LKRF--PQYVFGQAFTTLKCETSAYLPWLERR 153

Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

>sp|P18894|OXDA_MOUSE D-amino-acid oxidase OS=Mus musculus GN=Dao PE=1 SV=3

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 82/366 (22%)

Query: 252 KVAILGAGIIGLSTALELQRRF---PNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPD 308
           +VA++GAG+IGLSTAL +  R+       + + AD+F   TTSD AAGL++P      P 
Sbjct: 2   RVAVIGAGVIGLSTALCIHERYHPTQPLHMKIYADRFTPFTTSDVAAGLWQPY--LSDPS 59

Query: 309 LETTKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRM 364
                EW + ++D+    L    +E  G+ +I+GYNL + E     + + K  +  ++++
Sbjct: 60  NPQEAEWSQQTFDYLLSCLHSPNAEKMGLALISGYNLFRDE---VPDPFWKNAVLGFRKL 116

Query: 365 SEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDS 424
           +  E+ ++ P D+ YG + ++L++  + +LPW         L ER +   V+L H   +S
Sbjct: 117 TPSEM-DLFP-DYGYGWFNTSLLLEGKSYLPW---------LTERLTERGVKLIHRKVES 165

Query: 425 LTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHY 484
           L        E+V+ G         +    +AG L  +  +Q   G  +        E  +
Sbjct: 166 L--------EEVARGVDVIINCTGV----WAGALQADASLQPGRGQIIQ------VEAPW 207

Query: 485 LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYI 544
           +K  +  +              D   GIY S  +IP                        
Sbjct: 208 IKHFILTH--------------DPSLGIYNSPYIIPG----------------------- 230

Query: 545 IPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH 604
                  VTLGG    GN        D   I      + P +  A +     G RP R  
Sbjct: 231 ----SKTVTLGGIFQLGNWSGLNSVRDHNTIWKSCCKLEPTLKNARIVGELTGFRPVRPQ 286

Query: 605 VRVERD 610
           VR+ER+
Sbjct: 287 VRLERE 292

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|O35078|OXDA_RAT D-amino-acid oxidase OS=Rattus norvegicus GN=Dao PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 144/367 (39%), Gaps = 83/367 (22%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCD---VTVIADKFNMDTTSDGAAGLFEPSPNFMGPD 308
           +VA++GAG+IGLSTAL +  R+       + + AD+F   TTSD AAGL++P      P 
Sbjct: 2   RVAVIGAGVIGLSTALCIHERYHPAQPLHMKIYADRFTPFTTSDVAAGLWQPY--LSDPS 59

Query: 309 LETTKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRM 364
                EW + ++DH    L    +E  G+ +I+GYNL + E     + + K  +  ++++
Sbjct: 60  NPQEAEWNQQTFDHLQSCLHSPNAEKMGLALISGYNLFRDE---VPDPFWKSTVLGFRKL 116

Query: 365 SEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDS 424
           +  EL ++ P D+ YG + ++L++  + +L W         L ER +   V+  H    S
Sbjct: 117 TPSEL-DMFP-DYSYGWFNTSLLLEGKSYLSW---------LTERLTERGVKFIHRKVAS 165

Query: 425 L-TVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH 483
              VVRG +   +                        NC   V  G   A +  Q     
Sbjct: 166 FEEVVRGGVDVII------------------------NC-TGVWAGALQADASLQPGRGQ 200

Query: 484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543
            ++   P  K         I   D   GIY S  +IP                       
Sbjct: 201 IIQVEAPWIKHF-------ILTHDPSLGIYNSPYIIPG---------------------- 231

Query: 544 IIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603
                   VTLGG    GN        D   I      + P +  A +     G RP R 
Sbjct: 232 -----SKTVTLGGVFQLGNWSELNSVHDHNTIWKSCCQLEPTLKNARIMGELTGFRPVRP 286

Query: 604 HVRVERD 610
            VR+ER+
Sbjct: 287 QVRLERE 293

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|Q95XG9|OXDA2_CAEEL D-amino-acid oxidase 2 OS=Caenorhabditis elegans GN=Y69A2AR.5 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 8/151 (5%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
           K+A+LGAGI G+++AL +Q R PNC+VT+IA+KF+ +TTSD AAGL EP       D++ 
Sbjct: 3   KIAVLGAGINGIASALAIQERLPNCEVTIIAEKFSPNTTSDVAAGLIEPF--LCDDDVDR 60

Query: 312 TKEWIRYSYDHYAGLLSE-NCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELA 370
              W   +        ++ N G +  +GY L   +   +E  +LK +  V+  +++ E+ 
Sbjct: 61  IINWTSATISRIHEYQADGNPGAEEQSGYWLQSVK---SEPKWLKLMKNVHI-LTDAEMK 116

Query: 371 EIGPG-DWKYGIYMSTLVIPNRIFLPWCMQK 400
           ++    + K+GI+ +T  +    ++ WC  K
Sbjct: 117 QVARRPEHKFGIFYTTWYLEPTPYIKWCTDK 147

Could act as a detoxifying agent which removes D-amino acids accumulated during aging (By similarity). Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|A3KCL7|OXDD_PIG D-aspartate oxidase OS=Sus scrofa GN=DDO PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 86/153 (56%), Gaps = 8/153 (5%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
           ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +    +  
Sbjct: 5   RIAVVGAGVMGLSTAVCIFKLVPGCSITVISDKFTPETTSDVAAGMLIP-PVYPDTPIHK 63

Query: 312 TKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
            K+W + ++DH   +     +++ GV +++G+ + +S     E  +   V+  +++M++ 
Sbjct: 64  QKQWFKDTFDHLFAIANSAEAKDAGVLLVSGWQIFQSAPT-EEVPFWADVVLGFRKMTKN 122

Query: 368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           EL +        G   +TL      +LPW  ++
Sbjct: 123 ELKKF--PQHVCGQAFTTLKYEGPTYLPWLEKR 153

Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9Z1M5|OXDA_CAVPO D-amino-acid oxidase OS=Cavia porcellus GN=DAO PE=2 SV=1

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 152/367 (41%), Gaps = 82/367 (22%)

Query: 252 KVAILGAGIIGLSTALELQRRF----PNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           +V ++GAG+IGLSTAL +  R+       D+ V AD+F   T +D AAGL++P     GP
Sbjct: 2   RVVVIGAGVIGLSTALCICERYHSVLQQLDLRVYADRFTPLTNTDVAAGLWQPY--LSGP 59

Query: 308 DLETTKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
           D     EW + ++D+    +    +E  G+ +++GYNL    ++   + + K ++  +++
Sbjct: 60  DNPQEVEWNQQTFDYLLSHIHSPNAEQMGLALVSGYNLF---REAVPDPFWKNMVLGFRK 116

Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRD 423
           ++  EL ++ P D+ YG + ++L+I  + +L W         L ER +   V+ +    +
Sbjct: 117 LTPREL-DVFP-DYGYGWFHTSLIIEGKSYLAW---------LTERLTERGVKFFQRKVE 165

Query: 424 SLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH 483
           SL        E+V+ G     +               NC   V  G        Q     
Sbjct: 166 SL--------EEVARGGADVII---------------NC-TGVWAGALQPDPLLQPGRGQ 201

Query: 484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543
            +K   P  K         I   D + GIY S  +IP        +Q+            
Sbjct: 202 IIKVNAPWIKHF-------ILTHDPERGIYKSPYIIPG-------IQE------------ 235

Query: 544 IIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603
                   VTLGG    GN        D   I     ++ P +  A +   + G RP R 
Sbjct: 236 --------VTLGGIFQLGNWNEINSTQDHNTIWKGCCSLEPTLRNARIVGEYTGFRPVRP 287

Query: 604 HVRVERD 610
            +R+ER+
Sbjct: 288 QLRLERE 294

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|P00371|OXDA_PIG D-amino-acid oxidase OS=Sus scrofa GN=DAO PE=1 SV=2

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 152/367 (41%), Gaps = 82/367 (22%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P  +   P
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTS--EP 59

Query: 308 DLETTKEW----IRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
                  W      Y   H     + N G+  ++GYNL    ++   + Y K ++  +++
Sbjct: 60  SNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLF---REAVPDPYWKDMVLGFRK 116

Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRD 423
           ++  EL ++ P D++YG + ++L++  R +L W         L ER +   V+ +    +
Sbjct: 117 LTPREL-DMFP-DYRYGWFNTSLILEGRKYLQW---------LTERLTERGVKFFLRKVE 165

Query: 424 SLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH 483
           S         E+V+ G     +        +AG+L  +  +Q   G  + K +    +N 
Sbjct: 166 SF--------EEVARGGADVIINCT---GVWAGVLQPDPLLQPGRG-QIIKVDAPWLKNF 213

Query: 484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543
            +                     D + GIY S  +IP        +Q             
Sbjct: 214 IIT-------------------HDLERGIYNSPYIIPG-------LQA------------ 235

Query: 544 IIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603
                   VTLGGT   GN     +  D   I      + P +  A +   + G RP R 
Sbjct: 236 --------VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRP 287

Query: 604 HVRVERD 610
            VR+ER+
Sbjct: 288 QVRLERE 294

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	728
321461793	343	hypothetical protein DAPPUDRAFT_231376 [	0.210	0.446	0.443	1e-31
58387114	334	AGAP005323-PB [Anopheles gambiae str. PE	0.201	0.440	0.427	2e-30
195433084	334	GK23907 [Drosophila willistoni] gi|19416	0.200	0.437	0.417	7e-30
195120786	335	GI20172 [Drosophila mojavensis] gi|19390	0.200	0.435	0.430	1e-29
195026504	335	GH20617 [Drosophila grimshawi] gi|193902	0.200	0.435	0.410	3e-29
195066100	335	GH24186 [Drosophila grimshawi] gi|193892	0.200	0.435	0.410	3e-29
157133215	334	d-amino acid oxidase [Aedes aegypti] gi|	0.201	0.440	0.407	1e-28
157119089	334	d-amino acid oxidase [Aedes aegypti] gi|	0.201	0.440	0.407	1e-28
194758004	335	GF11092 [Drosophila ananassae] gi|190622	0.200	0.435	0.423	1e-28
201065547	352	FI02859p [Drosophila melanogaster]	0.208	0.431	0.414	1e-28

>gi|321461793|gb|EFX72821.1| hypothetical protein DAPPUDRAFT_231376 [Daphnia pulex]

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 5/158 (3%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG 306
           M    ++ +LGAGI+G++TA  ++ +    DVT+IADKF  DT SD AAG+F PS +F G
Sbjct: 1   MEEKKQICVLGAGIVGITTAFMMKEKHTKWDVTIIADKFEQDTLSDIAAGIFRPSTSFKG 60

Query: 307 PDLETTKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYK 362
           P  E TK+W+  +Y HY  +     +   GVQ ++GY L+    +  +N +L+ +LPVY+
Sbjct: 61  PTSEITKQWLVDAYHHYKKIQITKETAEAGVQEVSGYVLSSKFPEVTKNQFLEDLLPVYR 120

Query: 363 RMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           R +E EL +I PGDWKYG + +TLVI +R  LPW   K
Sbjct: 121 RANELEL-KICPGDWKYGAFFTTLVIESRYHLPWLRNK 157

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58387114|ref|XP_315337.2| AGAP005323-PB [Anopheles gambiae str. PEST] gi|158293988|ref|XP_001688634.1| AGAP005323-PA [Anopheles gambiae str. PEST] gi|55238139|gb|EAA11815.2| AGAP005323-PB [Anopheles gambiae str. PEST] gi|157015356|gb|EDO63640.1| AGAP005323-PA [Anopheles gambiae str. PEST]

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 5/152 (3%)

Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETT 312
           + ++GAG++GL+TALELQR   N +VT+++D+F  DT SD AAGLF P  +F GP  E T
Sbjct: 3   ICVVGAGVVGLTTALELQREMRNANVTILSDRFEQDTCSDVAAGLFRPGTSFSGPTEEIT 62

Query: 313 KEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEE 368
           ++WI  +Y H+  L     S   GV  ++GY  +  +     NHY++ VLPVY+  +E+E
Sbjct: 63  RKWISDAYSHWDELRRTEHSARAGVCQMSGYIFSSRDPAIVRNHYIEKVLPVYRAATEQE 122

Query: 369 LAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           L  I PG+WKYG + +T++   R+F PW  ++
Sbjct: 123 LT-ICPGEWKYGSFFTTILAECRLFQPWATER 153

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195433084|ref|XP_002064545.1| GK23907 [Drosophila willistoni] gi|194160630|gb|EDW75531.1| GK23907 [Drosophila willistoni]

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 102/151 (67%), Gaps = 5/151 (3%)

Query: 254 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 313
            +LG+GIIGL+TALELQR FP+  V+++AD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4   GVLGSGIIGLTTALELQREFPSAQVSIVADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Query: 314 EWIRYSYDHYAGLLSEN----CGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEEL 369
           +W++ +++++  L   N     GV  ++GY  +++      NH+++ +LPVY+R +E+EL
Sbjct: 64  QWMKDAFNYWDDLRRSNEAPLAGVNELSGYIFSRTTPAIVRNHFIEQLLPVYRRATEDEL 123

Query: 370 AEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
            ++  G WKYG + +T +  +R+FLP+   K
Sbjct: 124 -KLCQGGWKYGSFFTTCLTESRLFLPYATNK 153

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120786|ref|XP_002004902.1| GI20172 [Drosophila mojavensis] gi|193909970|gb|EDW08837.1| GI20172 [Drosophila mojavensis]

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 103/151 (68%), Gaps = 5/151 (3%)

Query: 254 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 313
            +LG+GIIGL++ALELQ++FP   V++IAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4   GVLGSGIIGLTSALELQQQFPTAQVSIIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Query: 314 EWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEEL 369
           +W+R +++++  L     S   GV  ++GY  +++      NH+++ +LPVY+R +EEEL
Sbjct: 64  QWMRDAFNYWDDLRRSSESAIAGVCQLSGYIYSRTTPSIVRNHFIEQLLPVYRRATEEEL 123

Query: 370 AEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
            ++  G WKYG + +T +  +R+FLP+  QK
Sbjct: 124 -KLCQGGWKYGSFFTTCLTESRLFLPYATQK 153

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026504|ref|XP_001986271.1| GH20617 [Drosophila grimshawi] gi|193902271|gb|EDW01138.1| GH20617 [Drosophila grimshawi]

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 101/151 (66%), Gaps = 5/151 (3%)

Query: 254 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 313
            +LG+GIIGL+TALELQ +FP   +++IAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4   GVLGSGIIGLTTALELQEQFPTAQISIIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Query: 314 EWIRYSYDHYAGLLSEN----CGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEEL 369
           +W+R +++++  +         GV  ++GY  +++      NH+++ +LPVY+R +EEEL
Sbjct: 64  QWMRDAFNYWDDIRRSKQASLAGVCQLSGYIFSRTTPSIVRNHFIEQLLPVYRRATEEEL 123

Query: 370 AEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
            ++  G WKYG + +T +  +R+FLP+  +K
Sbjct: 124 -QLCQGGWKYGSFFTTCLTESRLFLPYATKK 153

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195066100|ref|XP_001996777.1| GH24186 [Drosophila grimshawi] gi|193892007|gb|EDV90873.1| GH24186 [Drosophila grimshawi]

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 101/151 (66%), Gaps = 5/151 (3%)

Query: 254 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 313
            +LG+GIIGL+TALELQ +FP   +++IAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4   GVLGSGIIGLTTALELQEQFPTAQISIIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Query: 314 EWIRYSYDHYAGLLSEN----CGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEEL 369
           +W+R +++++  +         GV  ++GY  +++      NH+++ +LPVY+R +EEEL
Sbjct: 64  QWMRDAFNYWDDIRRSKEASLAGVCQLSGYIFSRTTPSIVRNHFIEQLLPVYRRATEEEL 123

Query: 370 AEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
            ++  G WKYG + +T +  +R+FLP+  +K
Sbjct: 124 -QLCQGGWKYGSFFTTCLTESRLFLPYATKK 153

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133215|ref|XP_001662804.1| d-amino acid oxidase [Aedes aegypti] gi|108870913|gb|EAT35138.1| AAEL012674-PA [Aedes aegypti]

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 98/152 (64%), Gaps = 5/152 (3%)

Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETT 312
           + ++GAG++GL+TALELQR F N +VT++AD+F  DT SD AAGLF P  +F GP  E T
Sbjct: 3   LCVIGAGVVGLTTALELQREFRNANVTILADRFEQDTCSDVAAGLFRPGTSFSGPTEEIT 62

Query: 313 KEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEE 368
           ++WI  +Y ++  +     +   GV  ++ Y  + ++     N Y++ +LPVY+  +E+E
Sbjct: 63  RKWISDAYLYWDEIRKTADASEAGVAQLSAYIFSSTDPAIVRNRYIEDILPVYRAATEQE 122

Query: 369 LAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           L  + PGDWKYG + +T++   R+F PW  +K
Sbjct: 123 LT-LCPGDWKYGSFYTTVLTECRLFQPWATKK 153

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119089|ref|XP_001659331.1| d-amino acid oxidase [Aedes aegypti] gi|108875482|gb|EAT39707.1| AAEL008512-PA [Aedes aegypti]

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 98/152 (64%), Gaps = 5/152 (3%)

Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETT 312
           + ++GAG++GL+TALELQR F N +VT++AD+F  DT SD AAGLF P  +F GP  E T
Sbjct: 3   LCVIGAGVVGLTTALELQREFRNANVTILADRFEQDTCSDVAAGLFRPGTSFSGPTEEIT 62

Query: 313 KEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEE 368
           ++WI  +Y ++  +     +   GV  ++ Y  + ++     N Y++ +LPVY+  +E+E
Sbjct: 63  RKWISDAYLYWDEIRKTADASEAGVAQLSAYIFSSTDPAIVRNRYIEDILPVYRAATEQE 122

Query: 369 LAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           L  + PGDWKYG + +T++   R+F PW  +K
Sbjct: 123 LT-LCPGDWKYGSFYTTVLTECRLFQPWATKK 153

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758004|ref|XP_001961252.1| GF11092 [Drosophila ananassae] gi|190622550|gb|EDV38074.1| GF11092 [Drosophila ananassae]

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 5/151 (3%)

Query: 254 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 313
            +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4   GVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Query: 314 EWIRYSYDHYAGLLSEN----CGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEEL 369
           +W+  +++++  L         GV  ++GY  +++      NH+++ +LPVY+R +EEEL
Sbjct: 64  QWMTDAFNYWDDLRRSKEAPLAGVCQLSGYIYSRTSPSIVRNHFIEKLLPVYRRATEEEL 123

Query: 370 AEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
            ++  G WKYG + +T +  +R+FLP+  +K
Sbjct: 124 -KLCQGGWKYGSFFTTCLTESRLFLPYATKK 153

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|201065547|gb|ACH92183.1| FI02859p [Drosophila melanogaster]

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 5/157 (3%)

Query: 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           GS     +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP
Sbjct: 15  GSRMHFGVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGP 74

Query: 308 DLETTKEWIRYSYDHYAGLLSEN----CGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
             + T++W+  +++++  L         GV  ++GY  +++      NH+++ +LPVY+R
Sbjct: 75  TQKITQQWMTDAFNYWDELRRSKEAPLAGVCQLSGYIYSRTSPSIVRNHFIEKLLPVYRR 134

Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
            +EEEL  +  G WKYG + +T +  +R+FLP+  +K
Sbjct: 135 ATEEEL-RLCNGGWKYGSFFTTCLTESRLFLPYATKK 170

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	728
FB|FBgn0033543	335	CG12338 [Drosophila melanogast	0.199	0.432	0.42	6.7e-47
ZFIN|ZDB-GENE-080204-116	339	zgc:172341 "zgc:172341" [Danio	0.210	0.451	0.333	1e-29
UNIPROTKB|P31228	341	DDO "D-aspartate oxidase" [Bos	0.207	0.442	0.325	7.4e-27
UNIPROTKB|F1MP99	341	DDO "D-aspartate oxidase" [Bos	0.207	0.442	0.325	9.4e-27
ZFIN|ZDB-GENE-040426-1894	353	dao.3 "D-amino-acid oxidase 3"	0.192	0.396	0.329	2.9e-24
UNIPROTKB|Q99489	341	DDO "D-aspartate oxidase" [Hom	0.193	0.413	0.322	3.2e-24
UNIPROTKB|F1PAL6	340	DDO "Uncharacterized protein"	0.193	0.414	0.348	3.3e-24
UNIPROTKB|J9P7G3	351	DDO "Uncharacterized protein"	0.193	0.401	0.348	5.5e-24
UNIPROTKB|F1RT00	341	DDO "D-aspartate oxidase" [Sus	0.193	0.413	0.308	4.6e-23
UNIPROTKB|A3KCL7	341	DDO "D-aspartate oxidase" [Sus	0.193	0.413	0.308	2e-22

FB|FBgn0033543 CG12338 [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 6.7e-47, Sum P(3) = 6.7e-47
 Identities = 63/150 (42%), Positives = 99/150 (66%)

Query:   255 ILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKE 314
             +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP  + T++
Sbjct:     5 VLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGPTQKITQQ 64

Query:   315 WIRYSYDHYAGLLSEN----CGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELA 370
             W+  +++++  L         GV  ++GY  +++      NH+++ +LPVY+R +EEEL 
Sbjct:    65 WMTDAFNYWDELRRSKEAPLAGVCQLSGYIYSRTSPSIVRNHFIEKLLPVYRRATEEEL- 123

Query:   371 EIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
              +  G WKYG + +T +  +R+FLP+  +K
Sbjct:   124 RLCNGGWKYGSFFTTCLTESRLFLPYATKK 153

GO:0008445 "D-aspartate oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-080204-116 zgc:172341 "zgc:172341" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
 Identities = 54/162 (33%), Positives = 91/162 (56%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             KVA++GAG++GLSTA+ +    P C VT+I++KF+  TTSDGAAG+  P   F    LE 
Sbjct:     5 KVAVVGAGVVGLSTAVCIAETLPYCSVTLISEKFSPHTTSDGAAGILLPK-EFPDIPLER 63

Query:   312 TKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              ++W + S+DH   +     + + GV + +GY + K   +  +  +   V   ++ M++ 
Sbjct:    64 QQQWFKKSFDHLLAIADSPQASDAGVYLSSGYQIFKDVPRDKKPFWADLVFG-FRYMTDH 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGER 409
             EL    P D K+G   +TL      +LPW +++   +++G R
Sbjct:   123 ELKRF-P-DHKFGQAFTTLKCECLSYLPW-LEQSVRNSIGGR 161

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P31228 DDO "D-aspartate oxidase" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 7.4e-27, Sum P(3) = 7.4e-27
 Identities = 52/160 (32%), Positives = 94/160 (58%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +    ++ 
Sbjct:     5 RIAVVGAGVMGLSTAVCISKMVPGCSITVISDKFTPETTSDVAAGMLIP-PTYPDTPIQK 63

Query:   312 TKEWIRYSYDHYAGLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              K+W + ++DH   +++    E+ GV +++G+ + +S     E  Y   V+  +++M+++
Sbjct:    64 QKQWFKETFDHLFAIVNSAEAEDAGVILVSGWQIFQSIPT-EEVPYWADVVLGFRKMTKD 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLG 407
             EL +  P    +G   +TL      +LPW +QK    N G
Sbjct:   123 ELKKF-P-QHVFGHAFTTLKCEGPAYLPW-LQKRVKGNGG 159

GO:0005777 "peroxisome" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1MP99 DDO "D-aspartate oxidase" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 9.4e-27, Sum P(3) = 9.4e-27
 Identities = 52/160 (32%), Positives = 94/160 (58%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +    ++ 
Sbjct:     5 RIAVVGAGVMGLSTAVCISKMVPGCSITVISDKFTPETTSDVAAGMLIP-PTYPDTPIQK 63

Query:   312 TKEWIRYSYDHYAGLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              K+W + ++DH   +++    E+ GV +++G+ + +S     E  Y   V+  +++M+++
Sbjct:    64 QKQWFKETFDHLFAIVNSAEAEDAGVILVSGWQIFQSIPT-EEVPYWADVVLGFRKMTKD 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLG 407
             EL +  P    +G   +TL      +LPW +QK    N G
Sbjct:   123 ELKKF-P-QHVFGHAFTTLKCEGPAYLPW-LQKRVKGNGG 159

GO:0048037 "cofactor binding" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0019478 "D-amino acid catabolic process" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007320 "insemination" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1894 dao.3 "D-amino-acid oxidase 3" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
 Identities = 51/155 (32%), Positives = 87/155 (56%)

Query:   252 KVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
             KV I+GAG+IGLSTA  + + F +      + V AD F   TTSDGAAGL++P     G 
Sbjct:     2 KVCIIGAGVIGLSTAQSIYQHFHSRVSPLTIEVYADFFTPLTTSDGAAGLWQPYLYDKGI 61

Query:   308 DLETTKEWIRYSYDHYAGLLSE----NCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
               ET  +W + ++D+    ++       G+ + +GYNL    +  A+  +   VL  +++
Sbjct:    62 VKET--QWNKETFDYLLSFINSPDSIKMGIFLQSGYNLCA--ETAADPSFKDTVLG-FRQ 116

Query:   364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCM 398
             ++  EL E+ PG + +G + ++++I  + +LPW M
Sbjct:   117 LTSREL-EMFPG-YSFGWFNTSIMIEGKTYLPWLM 149

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

UNIPROTKB|Q99489 DDO "D-aspartate oxidase" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
 Identities = 48/149 (32%), Positives = 86/149 (57%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             ++A++GAG++GLSTA+ + +  P C VT+I+DKF  DTTSD AAG+  P   +    + T
Sbjct:     5 RIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHT 63

Query:   312 TKEWIRYSYDHYAGLLSE----NCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              K+W R +++H   + +     + GV +++G+ + +S     E  +   V+  +++M+E 
Sbjct:    64 QKQWFRETFNHLFAIANSAEAGDAGVHLVSGWQIFQSTPT-EEVPFWADVVLGFRKMTEA 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPW 396
             EL +  P  + +G   +TL      +LPW
Sbjct:   123 ELKKF-P-QYVFGQAFTTLKCECPAYLPW 149

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0006531 "aspartate metabolic process" evidence=IEA

GO:0007320 "insemination" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0005777 "peroxisome" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0006533 "aspartate catabolic process" evidence=IDA

GO:0008445 "D-aspartate oxidase activity" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0048037 "cofactor binding" evidence=IDA

GO:0019478 "D-amino acid catabolic process" evidence=IDA

UNIPROTKB|F1PAL6 DDO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 208 (78.3 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
 Identities = 52/149 (34%), Positives = 83/149 (55%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             +VA++GAG++GLSTAL L R  P C VTV+ADK    TTSD AAG+  P   +    +  
Sbjct:     5 RVAVVGAGVVGLSTALCLSRLGPPCAVTVVADKVTPHTTSDVAAGMLIPH-TYPDIPIPK 63

Query:   312 TKEWIRYSYDHYAGLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              K+W R ++DH   + +    E+ GV +++G+ + +S     E  +   V+  ++RM+E 
Sbjct:    64 QKQWFRETFDHLFAIANSAEAEDAGVHLVSGWQIFRSVPT-EEVPFWADVVLGFRRMTEA 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPW 396
             EL +  P    +G   +TL   +  +L W
Sbjct:   123 ELKKF-P-QHVFGYAFTTLKCESSTYLSW 149

GO:0048037 "cofactor binding" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0019478 "D-amino acid catabolic process" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007320 "insemination" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

UNIPROTKB|J9P7G3 DDO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 208 (78.3 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
 Identities = 52/149 (34%), Positives = 83/149 (55%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             +VA++GAG++GLSTAL L R  P C VTV+ADK    TTSD AAG+  P   +    +  
Sbjct:     5 RVAVVGAGVVGLSTALCLSRLGPPCAVTVVADKVTPHTTSDVAAGMLIPH-TYPDIPIPK 63

Query:   312 TKEWIRYSYDHYAGLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              K+W R ++DH   + +    E+ GV +++G+ + +S     E  +   V+  ++RM+E 
Sbjct:    64 QKQWFRETFDHLFAIANSAEAEDAGVHLVSGWQIFRSVPT-EEVPFWADVVLGFRRMTEA 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPW 396
             EL +  P    +G   +TL   +  +L W
Sbjct:   123 ELKKF-P-QHVFGYAFTTLKCESSTYLSW 149

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

UNIPROTKB|F1RT00 DDO "D-aspartate oxidase" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 4.6e-23, Sum P(2) = 4.6e-23
 Identities = 46/149 (30%), Positives = 85/149 (57%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +    +  
Sbjct:     5 RIAVVGAGVMGLSTAVCIFKLVPGCSITVISDKFTPETTSDVAAGMLIP-PVYPDTPIHK 63

Query:   312 TKEWIRYSYDHYAGLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              K+W + ++DH   + +    ++ GV +++G+ + +S     E  +   V+  +++M++ 
Sbjct:    64 QKQWFKDTFDHLFAIANSAEAKDAGVLLVSGWQIFQSAPT-EEVPFWADVVLGFRKMTKN 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPW 396
             EL +  P     G   +TL      +LPW
Sbjct:   123 ELKKF-P-QHVCGQAFTTLKCEGPTYLPW 149

GO:0048037 "cofactor binding" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0019478 "D-amino acid catabolic process" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007320 "insemination" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

UNIPROTKB|A3KCL7 DDO "D-aspartate oxidase" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
 Identities = 46/149 (30%), Positives = 85/149 (57%)

Query:   252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
             ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +    +  
Sbjct:     5 RIAVVGAGVMGLSTAVCIFKLVPGCSITVISDKFTPETTSDVAAGMLIP-PVYPDTPIHK 63

Query:   312 TKEWIRYSYDHYAGLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEE 367
              K+W + ++DH   + +    ++ GV +++G+ + +S     E  +   V+  +++M++ 
Sbjct:    64 QKQWFKDTFDHLFAIANSAEAKDAGVLLVSGWQIFQSAPT-EEVPFWADVVLGFRKMTKN 122

Query:   368 ELAEIGPGDWKYGIYMSTLVIPNRIFLPW 396
             EL +  P     G   +TL      +LPW
Sbjct:   123 ELKKF-P-QHVCGQAFTTLKYEGPTYLPW 149

GO:0005777 "peroxisome" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.4.3.3	LOW CONFIDENCE prediction!
3rd Layer	1.4.3	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	728
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-12
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-10
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	8e-06
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	1e-05
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	6e-05
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	6e-04

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 14/144 (9%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
            V ++G GI+GLSTA EL RR     VT++         S   AGL    P         
Sbjct: 1   DVVVIGGGIVGLSTAYELARR--GLSVTLLERGDLASGASGRNAGLL--HPGLRKERAPL 56

Query: 312 TKEWIRYSYDHYAGLLSE---NCGVQVINGYNLAKSEKQCAENHYLKPVL----PVYKRM 364
                  S D +  L+ E   +C  +      LA+ E +      L   L       + +
Sbjct: 57  LARLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELL 116

Query: 365 SEEELAEIGPG---DWKYGIYMST 385
             EEL E+ PG     + G++   
Sbjct: 117 DAEELRELEPGLSPGIRGGLFYPD 140

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 70/371 (18%), Positives = 107/371 (28%), Gaps = 66/371 (17%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG 306
           M     V I+G GI+GLS A  L  R    DVTV+         +   AG       +  
Sbjct: 1   MSMKMDVVIIGGGIVGLSAAYYLAERGA--DVTVLEAGEAGGGAAGRNAGGI--LAPWAS 56

Query: 307 PDLETTKEWI----RYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPV----- 357
           P  E     +       +   +  L    G++     +LA  E         +       
Sbjct: 57  PGGELEVRPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEA 116

Query: 358 -LPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPS---NLGERPSTL 413
                + +   E AE+ P        +    +   +F P     D       L      L
Sbjct: 117 AGEDAELLDAAEAAELEPA-------LGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEEL 169

Query: 414 SVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLA 473
            V +        T V     +    G  T      ++ D           V +  G   A
Sbjct: 170 GVVIIEGG----TPVTSLERDGRVVGVET--DGGTIEADK----------VVLAAG---A 210

Query: 474 KSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNF 533
            + +  A    L   LP+     +    E   G    G+                     
Sbjct: 211 WAGELAATLGELP--LPLRPVRGQALTTEPPEGLLADGLAP------------------V 250

Query: 534 ASLVRLAGAYIIPSYGGLVTLGGTQDYGNAR---LGVDRFDSRAILNRTAAVRPEILAAP 590
             +V   G YI P   G + +GGT + G         +      +L    A+ P +  A 
Sbjct: 251 VLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAG 310

Query: 591 VEKVWVGLRPY 601
           +E  W GLRP 
Sbjct: 311 IEAAWAGLRPP 321

Length = 387

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 48.3 bits (116), Expect = 8e-06
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
             I+G GI+GLSTA++LQ R+P   + V+
Sbjct: 5   FVIIGGGIVGLSTAMQLQERYPGARIAVL 33

Length = 393

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
            K+AI+G GI GLS A  LQ+  P+ +VT+ 
Sbjct: 1   MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLF 31

Length = 444

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 46.0 bits (110), Expect = 6e-05
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
            KVAI+G GI GLS A  L ++ P+ D+T++
Sbjct: 1   KKVAIIGGGITGLSAAYRLHKKGPDADITLL 31

Length = 451

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300
             VAI+GAG  GL+ AL L R     DVT++ ++   +    G      P
Sbjct: 3   LDVAIVGAGPAGLALALALARA--GLDVTLL-ERAPRELLERGRGIALSP 49

Length = 387

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           + V I+G GI+G +TA EL    P+  V ++
Sbjct: 4   YDVVIIGGGIMGAATAYELSEYEPDLSVALL 34

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	728
KOG3923|consensus	342		100.0
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	100.0
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.97
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.97
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.97
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.97
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.96
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.96
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.96
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.95
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.95
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.95
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.95
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	99.94
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.94
KOG2844|consensus	856		99.93
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	99.92
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.88
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.88
KOG2853|consensus	509		99.87
COG0579	429	Predicted dehydrogenase [General function predicti	99.87
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	99.85
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.81
KOG2820|consensus	399		99.8
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.73
KOG2852|consensus	380		99.73
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.72
KOG2665|consensus	453		99.69
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.64
PRK05257	494	malate:quinone oxidoreductase; Validated	99.64
KOG3923|consensus	342		99.44
KOG0042|consensus	680		99.43
KOG1116|consensus	579		99.32
PLN02958	481	diacylglycerol kinase/D-erythro-sphingosine kinase	98.62
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.48
PRK08274	466	tricarballylate dehydrogenase; Validated	98.37
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.23
PRK06185	407	hypothetical protein; Provisional	98.19
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.1
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.97
KOG1298|consensus	509		97.89
PRK08401	466	L-aspartate oxidase; Provisional	97.79
COG2081	408	Predicted flavoproteins [General function predicti	97.77
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.76
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.7
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.67
PRK07121	492	hypothetical protein; Validated	97.66
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.65
PRK07512	513	L-aspartate oxidase; Provisional	97.64
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.63
PLN02204	601	diacylglycerol kinase	97.61
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.59
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.58
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.53
PRK07208	479	hypothetical protein; Provisional	97.52
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.51
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.51
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.49
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.49
PRK10157	428	putative oxidoreductase FixC; Provisional	97.49
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.49
PRK09126	392	hypothetical protein; Provisional	97.48
PRK10015	429	oxidoreductase; Provisional	97.48
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.48
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.47
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.47
PRK08163	396	salicylate hydroxylase; Provisional	97.45
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.45
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.44
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.43
PRK08013	400	oxidoreductase; Provisional	97.43
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.43
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.4
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.4
PRK07045	388	putative monooxygenase; Reviewed	97.4
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.4
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.4
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.38
PRK07804	541	L-aspartate oxidase; Provisional	97.37
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.37
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.37
PRK07236	386	hypothetical protein; Provisional	97.35
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.34
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.34
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.34
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.32
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.31
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.3
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.3
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.3
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.3
PLN02576	496	protoporphyrinogen oxidase	97.3
PRK06847	375	hypothetical protein; Provisional	97.28
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.28
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.28
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.27
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.27
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.27
PRK06834	488	hypothetical protein; Provisional	97.26
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.26
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.26
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.26
PRK06126	545	hypothetical protein; Provisional	97.26
PRK13059	295	putative lipid kinase; Reviewed	97.25
PRK07233	434	hypothetical protein; Provisional	97.24
KOG0029|consensus	501		97.24
PRK06370	463	mercuric reductase; Validated	97.23
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.23
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.22
COG3349	485	Uncharacterized conserved protein [Function unknow	97.22
PLN02985	514	squalene monooxygenase	97.21
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.21
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.2
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.19
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.19
PRK06184	502	hypothetical protein; Provisional	97.18
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.17
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.17
PLN02268	435	probable polyamine oxidase	97.16
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.16
PRK11445	351	putative oxidoreductase; Provisional	97.15
PRK12839	572	hypothetical protein; Provisional	97.15
PRK08244	493	hypothetical protein; Provisional	97.15
PLN02815	594	L-aspartate oxidase	97.15
PRK06753	373	hypothetical protein; Provisional	97.14
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.13
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.13
PRK06175	433	L-aspartate oxidase; Provisional	97.13
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.13
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.13
PRK13337	304	putative lipid kinase; Reviewed	97.12
PRK09077	536	L-aspartate oxidase; Provisional	97.11
PLN02661	357	Putative thiazole synthesis	97.1
PRK07588	391	hypothetical protein; Provisional	97.09
PRK07395	553	L-aspartate oxidase; Provisional	97.08
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.08
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.08
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.08
PRK08071	510	L-aspartate oxidase; Provisional	97.07
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.04
PRK07538	413	hypothetical protein; Provisional	97.04
PRK06116	450	glutathione reductase; Validated	97.04
PRK05868	372	hypothetical protein; Validated	97.01
PLN02568	539	polyamine oxidase	97.01
KOG2614|consensus	420		97.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	96.99
PTZ00367	567	squalene epoxidase; Provisional	96.98
PRK07190	487	hypothetical protein; Provisional	96.98
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.97
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.97
PRK13057	287	putative lipid kinase; Reviewed	96.96
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.96
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.95
TIGR00147	293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	96.94
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	96.93
PRK13055	334	putative lipid kinase; Reviewed	96.93
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	96.92
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.9
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.9
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.9
PRK08132	547	FAD-dependent oxidoreductase; Provisional	96.9
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	96.9
PRK00861	300	putative lipid kinase; Reviewed	96.9
PRK06475	400	salicylate hydroxylase; Provisional	96.89
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.89
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.89
PRK06996	398	hypothetical protein; Provisional	96.89
PRK11914	306	diacylglycerol kinase; Reviewed	96.89
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	96.87
PRK12416	463	protoporphyrinogen oxidase; Provisional	96.86
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.86
PLN02463	447	lycopene beta cyclase	96.84
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.83
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.83
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	96.83
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.81
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.8
KOG2960|consensus	328		96.8
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.8
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.79
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.78
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	96.78
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	96.77
PRK08294	634	phenol 2-monooxygenase; Provisional	96.76
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	96.75
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.73
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.71
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.7
PLN02697	529	lycopene epsilon cyclase	96.7
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.68
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.67
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.66
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.63
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	96.62
KOG1276|consensus	491		96.61
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.61
PRK14694	468	putative mercuric reductase; Provisional	96.61
KOG1399|consensus	448		96.58
PRK08275	554	putative oxidoreductase; Provisional	96.57
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.57
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.55
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.55
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.55
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	96.55
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.53
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.53
PRK02106	560	choline dehydrogenase; Validated	96.5
PTZ00058	561	glutathione reductase; Provisional	96.49
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.48
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.48
TIGR02053	463	MerA mercuric reductase. This model represents the	96.47
PRK10262	321	thioredoxin reductase; Provisional	96.45
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.44
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.44
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.42
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.41
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	96.41
PRK12831	464	putative oxidoreductase; Provisional	96.39
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.38
PLN02676	487	polyamine oxidase	96.37
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.36
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.35
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.32
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	96.31
PRK13748	561	putative mercuric reductase; Provisional	96.29
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.26
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.23
PLN02612	567	phytoene desaturase	96.2
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.11
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.08
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.07
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.02
PLN02487	569	zeta-carotene desaturase	96.01
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.96
PRK13054	300	lipid kinase; Reviewed	95.92
PLN02852	491	ferredoxin-NADP+ reductase	95.9
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.88
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	95.86
PLN02507	499	glutathione reductase	95.84
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.83
PTZ00052	499	thioredoxin reductase; Provisional	95.82
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.8
TIGR00275	400	flavoprotein, HI0933 family. The model when search	95.8
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.77
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	95.76
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.75
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.74
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.73
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.72
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.71
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	95.67
PLN02529	738	lysine-specific histone demethylase 1	95.64
COG3573	552	Predicted oxidoreductase [General function predict	95.63
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	95.63
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.51
PRK14727	479	putative mercuric reductase; Provisional	95.47
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.37
PLN02546	558	glutathione reductase	95.36
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	95.34
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.33
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.31
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.27
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.22
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	95.18
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	95.16
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.13
PLN03000	881	amine oxidase	95.07
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	95.05
KOG0685|consensus	498		95.03
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	94.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	94.95
KOG2415|consensus	621		94.82
PTZ00188	506	adrenodoxin reductase; Provisional	94.75
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.71
KOG4254|consensus	561		94.7
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.67
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.57
KOG4716|consensus	503		94.54
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	94.45
PRK13984	604	putative oxidoreductase; Provisional	94.37
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.34
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.24
COG1597	301	LCB5 Sphingosine kinase and enzymes related to euk	94.22
PRK09897	534	hypothetical protein; Provisional	94.19
PLN02976	1713	amine oxidase	94.09
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.08
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	93.99
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.94
PLN02785	587	Protein HOTHEAD	93.85
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.68
TIGR03702	293	lip_kinase_YegS lipid kinase YegS. Members of this	93.66
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.57
KOG1238|consensus	623		93.3
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.23
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.21
KOG1800|consensus	468		93.13
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.07
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.92
PRK07846	451	mycothione reductase; Reviewed	92.86
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	92.81
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.63
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	92.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	92.25
KOG2404|consensus	477		92.02
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.82
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.76
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	91.75
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	91.48
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.45
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.44
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.21
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.73
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.5
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	90.39
COG0569	225	TrkA K+ transport systems, NAD-binding component [	90.37
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.35
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	90.27
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	90.13
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	89.98
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	89.9
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.63
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	89.58
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	89.57
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.49
PRK12361	547	hypothetical protein; Provisional	89.46
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.45
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	89.38
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	89.26
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.08
KOG2755|consensus	334		88.66
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	88.65
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	88.6
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	88.54
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	88.28
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	88.19
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	87.74
PRK14989	847	nitrite reductase subunit NirD; Provisional	87.74
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	87.7
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.54
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	87.44
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	87.37
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	87.2
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	87.09
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	87.04
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	86.75
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.4
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	86.34
PRK07417	279	arogenate dehydrogenase; Reviewed	86.31
KOG1335|consensus	506		86.31
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	86.2
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.18
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	86.15
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	86.14
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	86.12
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.08
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	86.05
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.99
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	85.91
PRK07846	451	mycothione reductase; Reviewed	85.83
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	85.71
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.51
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	85.5
TIGR02053	463	MerA mercuric reductase. This model represents the	85.48
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	85.3
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	85.28
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	85.18
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	85.06
KOG3855|consensus	481		85.01
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	84.93
PRK06719	157	precorrin-2 dehydrogenase; Validated	84.9
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	84.86
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	84.77
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	84.72
PRK06370	463	mercuric reductase; Validated	84.71
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	84.67
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	84.66
PLN02353	473	probable UDP-glucose 6-dehydrogenase	84.39
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	84.21
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	84.12
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	84.11
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	84.07
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	84.01
PTZ00082	321	L-lactate dehydrogenase; Provisional	83.97
PRK13512	438	coenzyme A disulfide reductase; Provisional	83.95
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.94
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	83.85
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	83.82
KOG1371|consensus	343		83.65
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	83.49
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	83.26
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	83.21
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	83.17
PRK04148	134	hypothetical protein; Provisional	82.99
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	82.96
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	82.92
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	82.86
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	82.66
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	82.41
KOG2304|consensus	298		82.29
PRK06223	307	malate dehydrogenase; Reviewed	82.26
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	82.26
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	81.89
PRK08328	231	hypothetical protein; Provisional	81.89
PTZ00052	499	thioredoxin reductase; Provisional	81.65
KOG0399|consensus	2142		81.58
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	80.89
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	80.76
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	80.64
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	80.56
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	80.53
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	80.49
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	80.43
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	80.39
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	80.37
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	80.28
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	80.26
PTZ00058	561	glutathione reductase; Provisional	80.16
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	80.15
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	80.11
PRK07845	466	flavoprotein disulfide reductase; Reviewed	80.02

>KOG3923|consensus

Probab=100.00  E-value=6.5e-48  Score=394.89  Aligned_cols=326  Identities=33%  Similarity=0.552  Sum_probs=273.2

Q ss_pred             cceEEEeecceechhhHHHhhh-----hCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQR-----RFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA  324 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~-----~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~  324 (728)
                      .++|+|||+||+|||||+.|.+     ..+-.+|+|++..+....+|..++|+|+|..+. ++......+|++.+++.|.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~-~~~~~~~~~w~k~tf~~l~   81 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSD-GTPQEINRQWGKDTFNYLA   81 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCC-CCcHHHHHHHHHHHHHHHH
Confidence            4589999999999999988887     235679999999999999999999999995432 3345568899999999998


Q ss_pred             cccc----cccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceeccccc
Q psy16975        325 GLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK  400 (728)
Q Consensus       325 ~l~~----~~~Gv~~~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L~~~  400 (728)
                      .++.    ++.|+.+.+|+.+.+++.-.+..+.|.+...+++.|+++|+. ++|.....|++|.+...++..|++||.+.
T Consensus        82 ~l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~-~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~  160 (342)
T KOG3923|consen   82 HLARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELL-GFPDYSTYGIHFTTYLSEGPKYLPYLKKR  160 (342)
T ss_pred             HHhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhc-CCCCccccceeEEEeeccchhhhHHHHHH
Confidence            8876    578888999998877532223457889999999999999998 68854578999999999999999999999


Q ss_pred             CCCCCCCCCCceeeEEEEEeeCceeEEEecccccc-ccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhh
Q psy16975        401 DGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQC  479 (728)
Q Consensus       401 a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~  479 (728)
                      +.  .+|                      ++|+++ ++      ++++.. ...+|  +|||||     |+   |++.|+
T Consensus       161 l~--e~G----------------------vef~~r~v~------~l~E~~-~~~~D--VivNCt-----GL---~a~~L~  199 (342)
T KOG3923|consen  161 LT--ENG----------------------VEFVQRRVE------SLEEVA-RPEYD--VIVNCT-----GL---GAGKLA  199 (342)
T ss_pred             HH--hcC----------------------cEEEEeeec------cHHHhc-cCCCc--EEEECC-----cc---cccccc
Confidence            99  888                      333333 33      444441 23678  999999     99   999999


Q ss_pred             hhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH-hhc-eeeeecCCceEEeccc
Q psy16975        480 AENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR-LAG-AYIIPSYGGLVTLGGT  557 (728)
Q Consensus       480 ~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~-~~~-~YiiP~~dG~vviGgt  557 (728)
                      ++..    ++|+|||                       ++  .+.+||+.+     ++. +.. .|++|..+. |++||+
T Consensus       200 gDd~----~yPiRGq-----------------------Vl--~V~ApWvkh-----f~~~D~~~ty~iP~~~~-V~lGg~  244 (342)
T KOG3923|consen  200 GDDD----LYPIRGQ-----------------------VL--KVDAPWVKH-----FIYRDFSRTYIIPGTES-VTLGGT  244 (342)
T ss_pred             CCcc----eeeccce-----------------------EE--EeeCCceeE-----EEEecCCccEEecCCce-EEEccc
Confidence            8864    7999999                       44  678999988     333 444 589987765 999999


Q ss_pred             cccCcccccccccchhhhhhcccccccccccccceeeeeecccccceeeeeeccccccceeeeeeeeEEeceeEEEEEee
Q psy16975        558 QDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHR  637 (728)
Q Consensus       558 ~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~  637 (728)
                      .++++|+.+++.++...|++++.++.|+|..++|++.|+|+||.|+.+|+|.|.+..                       
T Consensus       245 ~Q~g~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~-----------------------  301 (342)
T KOG3923|consen  245 KQEGNWNLEITDEDRRDILERCCALEPSLRHAEIIREWVGLRPGRKQVRLEAELRTR-----------------------  301 (342)
T ss_pred             cccCcccCcCChhhHHHHHHHHHHhCcccccceehhhhhcccCCCCceeeeeeeecC-----------------------
Confidence            999999999999999999999999999999999999999999999999999975421                       


Q ss_pred             ecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeec
Q psy16975        638 FKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ  717 (728)
Q Consensus       638 ~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~  717 (728)
                                                                    .|+...|||||||||.|||++||||.+++.|+..
T Consensus       302 ----------------------------------------------~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~  335 (342)
T KOG3923|consen  302 ----------------------------------------------GGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLD  335 (342)
T ss_pred             ----------------------------------------------CCccceeEeeccCCCCceecccchHHHHHHHHHH
Confidence                                                          2566779999999999999999999999999988


Q ss_pred             ccccc
Q psy16975        718 SHKAS  722 (728)
Q Consensus       718 ~~~~~  722 (728)
                      .++++
T Consensus       336 ~l~~~  340 (342)
T KOG3923|consen  336 ALGAS  340 (342)
T ss_pred             Hhhhc
Confidence            87654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=100.00  E-value=2.1e-34  Score=339.67  Aligned_cols=350  Identities=16%  Similarity=0.124  Sum_probs=234.0

Q ss_pred             CCcceEEEEEEEEeeecccccCcccce-eeeeEEEEEeCCCCCccccccCCceeeEEeecCCCCCCCccccCcceEEEee
Q psy16975        179 ADLSWEVSVSVQQVTQTDEKVTPNLEI-KQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILG  257 (728)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIG  257 (728)
                      +.-.+.+.++..+||+.|.++||.+++ ..+|.|+-...+...+....   .+       ..+|..++.....+||+|||
T Consensus       198 ~~~~~~t~t~a~~vr~~l~~~GF~v~~~~~~g~kr~~~~~~~~~~~~~---~~-------~~~w~~~~~~~~~~dVvIIG  267 (662)
T PRK01747        198 PGATLATFTSAGFVRRGLQEAGFTVRKVKGFGRKREMLVGELEQTLPA---PL-------AAPWFARPGSPKARDAAIIG  267 (662)
T ss_pred             CCCEEEEeehHHHHHHHHHHcCCeeeecCCCchhhhhhhehhccccCC---CC-------CCCcccCCCcCCCCCEEEEC
Confidence            356788999999999999999999985 33444543322111000000   00       01111111112247999999


Q ss_pred             cceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhh----hcccccccccccccc
Q psy16975        258 AGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIR----YSYDHYAGLLSENCG  332 (728)
Q Consensus       258 AGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~----~s~~~~~~l~~~~~G  332 (728)
                      |||+|+++||+|++  +|++|+|||++. ++.++|++++|++++..  .. ......++..    .+.+.|.++.+....
T Consensus       268 aGIaG~s~A~~La~--~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~--~~-~~~~~~~l~~~a~~~a~~~~~~l~~~~~~  342 (662)
T PRK01747        268 GGIAGAALALALAR--RGWQVTLYEADEAPAQGASGNRQGALYPLL--SK-DDNALSRFFRAAFLFARRFYDALPAAGVA  342 (662)
T ss_pred             ccHHHHHHHHHHHH--CCCeEEEEecCCCccccCCcCccccccccc--CC-CCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999  899999999984 78999999999999842  11 1222333333    344555554310112


Q ss_pred             cEE-Eccc-ccccchhhhhhc----ccccccchhccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceecccccCCCC
Q psy16975        333 VQV-INGY-NLAKSEKQCAEN----HYLKPVLPVYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQKDGPS  404 (728)
Q Consensus       333 v~~-~~G~-~~a~~~~~~~~~----~~~~~~g~~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~a~~~  404 (728)
                      +.+ .+|+ .++.++++.+..    ..... +..+++++++|+.+++|. ....|++++ +|++||..++.+|++.+.  
T Consensus       343 ~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~--  419 (662)
T PRK01747        343 FDHDWCGVLQLAWDEKSAEKIAKMLALGLP-AELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAG--  419 (662)
T ss_pred             CCCCCCceEEeecCchHHHHHHHHHhccCc-hHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhcc--
Confidence            223 3465 445554433211    11112 345789999999988765 345678887 599999999999999998  


Q ss_pred             CCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccc-cccccccccccEEEcccccccchhhhhhc
Q psy16975        405 NLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH-YAGLLSENCGVQVINGYNLAKSEKQCAEN  482 (728)
Q Consensus       405 ~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~-ada~~VVnAa~~viaG~~~~~S~~L~~~~  482 (728)
                      + |       ++++++++ +++....+.+.           |.+.  .+. ..++.||+|+     |.   |+..+.+..
T Consensus       420 ~-G-------v~i~~~~~V~~i~~~~~~~~-----------v~t~--~g~~~~ad~VV~A~-----G~---~s~~l~~~~  470 (662)
T PRK01747        420 Q-Q-------LTIHFGHEVARLEREDDGWQ-----------LDFA--GGTLASAPVVVLAN-----GH---DAARFAQTA  470 (662)
T ss_pred             c-C-------cEEEeCCEeeEEEEeCCEEE-----------EEEC--CCcEEECCEEEECC-----CC---Ccccccccc
Confidence            7 8       89999888 44543332221           2222  221 2233999999     99   998887654


Q ss_pred             ccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeee-cCCceEEeccccccC
Q psy16975        483 HYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIP-SYGGLVTLGGTQDYG  561 (728)
Q Consensus       483 gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP-~~dG~vviGgt~e~~  561 (728)
                        .+|+.|+|||++...                     .....+.+..      +.....|++| ..+|.+++|+|++.+
T Consensus       471 --~lpl~p~RGqv~~~~---------------------~~~~~~~~~~------~~~~~~Y~~p~~~~g~~~iGat~~~~  521 (662)
T PRK01747        471 --HLPLYSVRGQVSHLP---------------------TTPALSALKQ------VLCYDGYLTPQPANGTHCIGASYDRD  521 (662)
T ss_pred             --CCCcccccceEEeec---------------------CCccccccCc------eeECCceeCCCCCCCceEeCcccCCC
Confidence              378999999964211                     0100111111      1123579999 788999999999998


Q ss_pred             cccccccccchhhhhhccccccccc-----ccccceeeeeecccccce
Q psy16975        562 NARLGVDRFDSRAILNRTAAVRPEI-----LAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       562 ~~d~~~~~~~~~~ll~~~~~l~P~L-----~~~~I~~~waGlRP~tpd  604 (728)
                      +.+..++.+..+.+++++.+++|.+     .+.++.+.|+|+||+|+|
T Consensus       522 ~~~~~~~~~~~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~tpD  569 (662)
T PRK01747        522 DTDTAFREADHQENLERLAECLPQALWAKEVDVSALQGRVGFRCASRD  569 (662)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCchhhhccCccccCceEEEeccCCC
Confidence            8888888888999999999999987     577889999999999999

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.97  E-value=3.3e-33  Score=310.93  Aligned_cols=347  Identities=15%  Similarity=0.134  Sum_probs=247.2

Q ss_pred             ccCCceeeEEeecCCCCCCCccccCcceEEEeecceechhhHHHhhhhCC-CC-cEEEeecccccccCCCCccccccCCC
Q psy16975        225 QNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFP-NC-DVTVIADKFNMDTTSDGAAGLFEPSP  302 (728)
Q Consensus       225 ~g~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIGAGIiGLStA~~La~~~~-G~-~VtVIEk~~~g~gAS~~agGii~p~~  302 (728)
                      .+..+|+..|-++.        ....+||+||||||+|+|+||+|++  + |. +|+|||++.++.++|+.++|+++..+
T Consensus        13 ~~~~~~~~~~~~~~--------~~~~~dvvIIGgGi~G~s~A~~L~~--~~g~~~V~vle~~~~~~gas~~~~g~~~~~~   82 (407)
T TIGR01373        13 RGHRGWKPAWRSPE--------PKPTYDVIIVGGGGHGLATAYYLAK--EHGITNVAVLEKGWLGGGNTGRNTTIVRSNY   82 (407)
T ss_pred             ccCCCCCcccCCCC--------CCccCCEEEECCcHHHHHHHHHHHH--hcCCCeEEEEEcccccCcccccccceeeecc
Confidence            35678988887754        3357899999999999999999998  5 85 89999999999999999999998743


Q ss_pred             CCCCCCchhhhhhhhhcccccccccccccccE--E-Ecccc-cccchhhhhh----cccccccchhccccCHHHHhhcCC
Q psy16975        303 NFMGPDLETTKEWIRYSYDHYAGLLSENCGVQ--V-INGYN-LAKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGP  374 (728)
Q Consensus       303 ~l~~~~~~~~~~~~~~s~~~~~~l~~~~~Gv~--~-~~G~~-~a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P  374 (728)
                      .  .+   ...++...+.+.|.++.+ +.+++  + ++|++ ++.++++.+.    ...++..+.+.++|+++|+++++|
T Consensus        83 ~--~~---~~~~~~~~s~~l~~~l~~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P  156 (407)
T TIGR01373        83 L--YP---ESAELYEHAMKLWEGLSQ-DLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIP  156 (407)
T ss_pred             c--Cc---cccHHHHHHHHHHHHHHH-HhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCC
Confidence            2  11   234455666677776653 44443  3 56754 4555554322    223345678899999999999999


Q ss_pred             C-C--------cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchh
Q psy16975        375 G-D--------WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTC  443 (728)
Q Consensus       375 ~-~--------~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~  443 (728)
                      . .        ..++++.+ ++++||..++.+|++.+.  ++|       ++++++|+ ++++..+         +++++
T Consensus       157 ~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~~l~~~a~--~~G-------v~~~~~~~V~~i~~~~---------~~~~~  218 (407)
T TIGR01373       157 ILDFSPDARFPVVGGLLQRRGGTARHDAVAWGYARGAD--RRG-------VDIIQNCEVTGFIRRD---------GGRVI  218 (407)
T ss_pred             CCccccccccceeEEEEcCCCCcCCHHHHHHHHHHHHH--HCC-------CEEEeCCEEEEEEEcC---------CCcEE
Confidence            5 1        12345545 489999999999999998  888       99999888 4443221         12222


Q ss_pred             HHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCcc
Q psy16975        444 AMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRI  523 (728)
Q Consensus       444 ~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~  523 (728)
                      .+.+.  .+...++.||+|+     |.   |+..+....++.+++.|.++|++                     +.++. 
T Consensus       219 ~v~t~--~g~i~a~~vVvaa-----gg---~~~~l~~~~g~~~~~~~~~~~~~---------------------~~~~~-  266 (407)
T TIGR01373       219 GVETT--RGFIGAKKVGVAV-----AG---HSSVVAAMAGFRLPIESHPLQAL---------------------VSEPL-  266 (407)
T ss_pred             EEEeC--CceEECCEEEECC-----Ch---hhHHHHHHcCCCCCcCcccceEE---------------------EecCC-
Confidence            33333  3334444899999     99   88888776676677788877742                     11110 


Q ss_pred             ccchhcccchHHHH--HhhceeeeecCCceEEeccccc-cCcccccccccchhhhhhcccccccccccccceeeeeeccc
Q psy16975        524 FLPWCMQKNFASLV--RLAGAYIIPSYGGLVTLGGTQD-YGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRP  600 (728)
Q Consensus       524 ~~P~l~~~~~~~~i--~~~~~YiiP~~dG~vviGgt~e-~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP  600 (728)
                       .+.+..     ++  .+...|+.|..+|++++|++.+ ...++..++.+..+.+++.+.+++|.|.+.++.+.|+|+||
T Consensus       267 -~~~~~~-----~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~~~  340 (407)
T TIGR01373       267 -KPIIDT-----VVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVRMLRSWGGIVD  340 (407)
T ss_pred             -CCCcCC-----eEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCCeEEEeccccc
Confidence             011111     11  1346799999999999998765 34455556677789999999999999999999999999999


Q ss_pred             ccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcc
Q psy16975        601 YRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDM  678 (728)
Q Consensus       601 ~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~  678 (728)
                      +|+|  +.|..                                                                     
T Consensus       341 ~t~D~~PiIg~---------------------------------------------------------------------  351 (407)
T TIGR01373       341 VTPDGSPIIGK---------------------------------------------------------------------  351 (407)
T ss_pred             cCCCCCceeCC---------------------------------------------------------------------
Confidence            9999  32211                                                                     


Q ss_pred             eEEeecCceEEEEeecccCccccccCCCCceeeeeeeecc
Q psy16975        679 HVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS  718 (728)
Q Consensus       679 ~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~  718 (728)
                        .|.+|    +|.+.||+|+|+++++++|+.+++++.+.
T Consensus       352 --~~~~g----l~~a~G~~g~G~~~ap~~G~~la~li~~~  385 (407)
T TIGR01373       352 --TPLPN----LYLNCGWGTGGFKATPASGTVFAHTLARG  385 (407)
T ss_pred             --CCCCC----eEEEeccCCcchhhchHHHHHHHHHHhCC
Confidence              02223    78999999999999999999999998653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.97  E-value=4.4e-33  Score=310.27  Aligned_cols=335  Identities=21%  Similarity=0.221  Sum_probs=239.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCC--CC-------------C-------
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFM--GP-------------D-------  308 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~--~~-------------~-------  308 (728)
                      ||+||||||+||++|++|++  .|++|+|||++. ++.++|++|+|++++.....  .+             .       
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRP   79 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecC
Confidence            89999999999999999999  899999999984 68899999999998853100  00             0       


Q ss_pred             --c-----------------------hhhhhhhhhcccccccccccccccE--E-Ecccc-cccchhhhhh----ccccc
Q psy16975        309 --L-----------------------ETTKEWIRYSYDHYAGLLSENCGVQ--V-INGYN-LAKSEKQCAE----NHYLK  355 (728)
Q Consensus       309 --~-----------------------~~~~~~~~~s~~~~~~l~~~~~Gv~--~-~~G~~-~a~~~~~~~~----~~~~~  355 (728)
                        .                       ....+++.++.+.|.++.+ +.+++  + +.|.+ ++.++++++.    ...++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~  158 (416)
T PRK00711         80 DGDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRA-ETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLE  158 (416)
T ss_pred             CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCccccccCcEEEEECCHHHHHHHHHHHHHHH
Confidence              0                       0123344556677777663 55654  3 45764 4555554322    23445


Q ss_pred             ccchhccccCHHHHhhcCCC------CcceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEE
Q psy16975        356 PVLPVYKRMSEEELAEIGPG------DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTV  427 (728)
Q Consensus       356 ~~g~~~~~L~~~el~~~~P~------~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~  427 (728)
                      +.+.++++|+.+|+.+++|.      ...+|++++ ++++||..++.+|++.+.  ++|       ++|+++|+ ++++.
T Consensus       159 ~~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~--~~G-------~~i~~~~~V~~i~~  229 (416)
T PRK00711        159 EAGVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAE--QLG-------VKFRFNTPVDGLLV  229 (416)
T ss_pred             HcCCCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHH--HCC-------CEEEcCCEEEEEEe
Confidence            67888999999999999884      233567777 589999999999999998  888       99999888 44433


Q ss_pred             EeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCC
Q psy16975        428 VRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGD  507 (728)
Q Consensus       428 ~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~  507 (728)
                      ..+.          ++.+.+.  .+...++.||+|+     |.   |+..++...++..|+.|+|||++...        
T Consensus       230 ~~~~----------~~~v~t~--~~~~~a~~VV~a~-----G~---~~~~l~~~~g~~~pi~p~rg~~~~~~--------  281 (416)
T PRK00711        230 EGGR----------ITGVQTG--GGVITADAYVVAL-----GS---YSTALLKPLGVDIPVYPLKGYSLTVP--------  281 (416)
T ss_pred             cCCE----------EEEEEeC--CcEEeCCEEEECC-----Cc---chHHHHHHhCCCcccCCccceEEEEe--------
Confidence            2222          1123333  2333444999999     99   99999887776788999999853110        


Q ss_pred             cceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccccccCcccccccccchhhhhhcccccccccc
Q psy16975        508 WKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEIL  587 (728)
Q Consensus       508 w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~  587 (728)
                                 +......|...      +......+++++.+|++++|++.+...++..++.+..+.+.+.+.++||.+.
T Consensus       282 -----------~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~  344 (416)
T PRK00711        282 -----------ITDEDRAPVST------VLDETYKIAITRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGG  344 (416)
T ss_pred             -----------cCCCCCCCcee------EEecccCEEEeecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcc
Confidence                       00000011100      1112234566777888999998877777777777888889999999999999


Q ss_pred             cccceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceee
Q psy16975        588 AAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFN  665 (728)
Q Consensus       588 ~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n  665 (728)
                      +.++.+.|+|+||+|+|  +.|..                                                        
T Consensus       345 ~~~~~~~w~G~r~~t~D~~PiIG~--------------------------------------------------------  368 (416)
T PRK00711        345 DLSQATFWTGLRPMTPDGTPIVGA--------------------------------------------------------  368 (416)
T ss_pred             cccccceeeccCCCCCCCCCEeCC--------------------------------------------------------
Confidence            99999999999999999  22211                                                        


Q ss_pred             ccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeecc
Q psy16975        666 CTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS  718 (728)
Q Consensus       666 c~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~  718 (728)
                                     .|.+|    +|.++||+|+|++++|++|+.++++|.+.
T Consensus       369 ---------------~~~~g----l~~a~G~~g~G~~~ap~~g~~la~li~g~  402 (416)
T PRK00711        369 ---------------TRYKN----LWLNTGHGTLGWTMACGSGQLLADLISGR  402 (416)
T ss_pred             ---------------cCCCC----EEEecCCchhhhhhhhhHHHHHHHHHcCC
Confidence                           02233    78999999999999999999999999764

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.97  E-value=3.4e-32  Score=298.26  Aligned_cols=310  Identities=19%  Similarity=0.178  Sum_probs=204.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSEN  330 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~~~  330 (728)
                      +||+||||||+|++|||+|++  +|++|+|||++.++.++|++|+|++.+...  .  .....++++++.+.|.++.+ +
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~~~~gaS~~~~G~~~~~~~--~--~~~~~~l~~~~~~~~~~l~~-~   73 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSSRAQGASVRNFGQVWPTGQ--A--PGPAWDRARRSREIWLELAA-K   73 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCceEEecCC--C--CccHHHHHHHHHHHHHHHHH-H
Confidence            589999999999999999999  899999999999889999999999976321  1  12356688888888888774 5


Q ss_pred             cccEE-Eccccc-ccchhhhhh----cccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceecccc
Q psy16975        331 CGVQV-INGYNL-AKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPWCMQ  399 (728)
Q Consensus       331 ~Gv~~-~~G~~~-a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~L~~  399 (728)
                      .++.+ +.|+++ +.++++.+.    ...++..+.++++|+++|+++++|.    ....|++++ ++++||..++.+|++
T Consensus        74 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~  153 (365)
T TIGR03364        74 AGIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAA  153 (365)
T ss_pred             cCCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHH
Confidence            56665 456543 444443321    1223345667899999999999983    345677777 599999999999999


Q ss_pred             cCCCCCC-CCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchh
Q psy16975        400 KDGPSNL-GERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEK  477 (728)
Q Consensus       400 ~a~~~~~-G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~  477 (728)
                      .+.  ++ |       ++|+++++ ++++  .+             .|.+.  .+...++.||+|+     |.   |+..
T Consensus       154 ~~~--~~~G-------v~i~~~t~V~~i~--~~-------------~v~t~--~g~i~a~~VV~A~-----G~---~s~~  199 (365)
T TIGR03364       154 YLA--EQHG-------VEFHWNTAVTSVE--TG-------------TVRTS--RGDVHADQVFVCP-----GA---DFET  199 (365)
T ss_pred             HHH--hcCC-------CEEEeCCeEEEEe--cC-------------eEEeC--CCcEEeCEEEECC-----CC---Chhh
Confidence            876  54 7       89998887 3332  11             12222  2332333999999     99   9999


Q ss_pred             hhhhcccccccchhccccCHHHHhh-cCCCCcc-eeEeEEeeeecCccccch---hccc---chHHHHH-hhceeeeecC
Q psy16975        478 QCAENHYLKPVLPVYKRMSEEELAE-IGPGDWK-YGIYMSTLVIPNRIFLPW---CMQK---NFASLVR-LAGAYIIPSY  548 (728)
Q Consensus       478 L~~~~gi~lpv~PvRGQl~~~el~~-~~p~~w~-~G~~~~Tlvve~~~~~P~---l~~~---~~~~~i~-~~~~YiiP~~  548 (728)
                      |++..+..+++.|+|||++.++... .....+. .+....  ..+.-...|+   ....   ..+.+.. ....|+.|+.
T Consensus       200 l~~~~~~~~~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  277 (365)
T TIGR03364       200 LFPELFAASGVRRCKLQMMRTAPQPRLPLGTALLTGLSLR--RYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNP  277 (365)
T ss_pred             hCcchhhccCcceEEEEeeeccCCCCCcCCccccccceee--echhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECC
Confidence            8877654578999999987544211 0000000 000000  0000000000   0000   0000111 2357999999


Q ss_pred             CceEEeccccccCccccc-ccccchhhhhhcccccccccccccceeeeeecccccce
Q psy16975        549 GGLVTLGGTQDYGNARLG-VDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       549 dG~vviGgt~e~~~~d~~-~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd  604 (728)
                      +|++++|++.+....+.. .+.+..+.+.+.+.+++ .|.+.++.+.|+|+||+|+|
T Consensus       278 ~g~~~iG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~t~d  333 (365)
T TIGR03364       278 DGELIIGDSHEYGLAPDPFDDEEIDNLILAEAKTIL-GLPDLDIVERWQGVYASSPP  333 (365)
T ss_pred             CCCEEecCcccccCCCCCcchHHHHHHHHHHHHHhc-CCCCCceEEEEeEEecCCCC
Confidence            999999999876543322 23334455666676665 68889999999999999998

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.97  E-value=1.8e-32  Score=305.31  Aligned_cols=344  Identities=21%  Similarity=0.225  Sum_probs=237.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCC--CC-------------CC------
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNF--MG-------------PD------  308 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l--~~-------------~~------  308 (728)
                      +||+|||||++|+++||+|++  .|++|+||||+. ++.++|++|+|++.+.+..  ..             ++      
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLN   79 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEec
Confidence            599999999999999999999  899999999996 7889999999999773210  00             00      


Q ss_pred             ------------------------chhhhhhhhhcccccccccccccccE--E-Ecccc-cccchhhhhh----cccccc
Q psy16975        309 ------------------------LETTKEWIRYSYDHYAGLLSENCGVQ--V-INGYN-LAKSEKQCAE----NHYLKP  356 (728)
Q Consensus       309 ------------------------~~~~~~~~~~s~~~~~~l~~~~~Gv~--~-~~G~~-~a~~~~~~~~----~~~~~~  356 (728)
                                              .....+++.++.+.|.++.+ +.+++  + ++|++ ++.++++.+.    ...++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~  158 (410)
T PRK12409         80 PKPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAE-REGIDFDLERRGILHIYHDKAGFDHAKRVNALLAE  158 (410)
T ss_pred             CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCcceeecCcEEEEECCHHHHHhccHHHHHHHh
Confidence                                    01123456677777777764 55554  3 56765 4555554332    133345


Q ss_pred             cchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEecc
Q psy16975        357 VLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGP  431 (728)
Q Consensus       357 ~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~  431 (728)
                      .+.+.++|+++|+++++|.   ....|++++ ++++|+..++..|++.++  +.|       ++|+++++ ++++..++.
T Consensus       159 ~g~~~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a~--~~G-------~~i~~~~~V~~i~~~~~~  229 (410)
T PRK12409        159 GGLERRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACA--RLG-------VQFRYGQEVTSIKTDGGG  229 (410)
T ss_pred             cCCCeEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHHH--hCC-------CEEEcCCEEEEEEEeCCE
Confidence            6777899999999999986   234567776 589999999999999998  888       99999988 455433322


Q ss_pred             ccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCccee
Q psy16975        432 LHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYG  511 (728)
Q Consensus       432 ~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G  511 (728)
                      +...+...+.  . +..  ...++  .||+|+     |.   |+..+.+..+...++.|++||++..++...        
T Consensus       230 ~~v~~~~~~~--~-~~~--~i~a~--~vV~a~-----G~---~s~~l~~~~~~~~~i~p~~g~~~~~~~~~~--------  286 (410)
T PRK12409        230 VVLTVQPSAE--H-PSR--TLEFD--GVVVCA-----GV---GSRALAAMLGDRVNVYPVKGYSITVNLDDE--------  286 (410)
T ss_pred             EEEEEEcCCC--C-ccc--eEecC--EEEECC-----Cc---ChHHHHHHhCCCCccccCCceEEEeecCCc--------
Confidence            2110110000  0 000  12345  999999     99   999998877766789999998542111000        


Q ss_pred             EeEEeeeecCccccchhcccchHHHHHhhceeeee-c-CCceEEeccccccCcccccccccchhhhhhcccccccccccc
Q psy16975        512 IYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIP-S-YGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAA  589 (728)
Q Consensus       512 ~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP-~-~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~  589 (728)
                             . .....|+.       .+.+...|+.+ + .++++++||+.+...++..++.+..+.+++++.++||.|.+.
T Consensus       287 -------~-~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~  351 (410)
T PRK12409        287 -------A-SRAAAPWV-------SLLDDSAKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTR  351 (410)
T ss_pred             -------c-ccccCCce-------eeeecCCcEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCCCcc
Confidence                   0 00001211       01123344444 2 456788999988777777777788999999999999999988


Q ss_pred             cceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeecc
Q psy16975        590 PVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCT  667 (728)
Q Consensus       590 ~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~  667 (728)
                      .+. .|+|+||+++|  +.|...                                                         
T Consensus       352 ~~~-~w~G~r~~t~D~~PiiG~~---------------------------------------------------------  373 (410)
T PRK12409        352 RVV-PWAGLRPMMPNMMPRVGRG---------------------------------------------------------  373 (410)
T ss_pred             ccc-eecccCCCCCCCCCeeCCC---------------------------------------------------------
Confidence            876 79999999999  333210                                                         


Q ss_pred             ccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeecccc
Q psy16975        668 GLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHK  720 (728)
Q Consensus       668 g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~~  720 (728)
                                    +.+|    +|+++||||.|+++|+++|+.+++++.+...
T Consensus       374 --------------~~~~----l~~~~G~~~~G~~~ap~~g~~lA~~i~~~~~  408 (410)
T PRK12409        374 --------------RRPG----VFYNTGHGHLGWTLSAATADLVAQVVAQKLP  408 (410)
T ss_pred             --------------CCCC----EEEecCCcccchhhcccHHHHHHHHHcCCCC
Confidence                          1123    7899999999999999999999999876544

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.96  E-value=1.8e-31  Score=287.70  Aligned_cols=297  Identities=25%  Similarity=0.261  Sum_probs=208.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccccccccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENC  331 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~~~~  331 (728)
                      ||+||||||+|++|||+|++  +|++|+|||++.+++++|+.++|++++..  .........++..++++.|.++.+ +.
T Consensus         1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~~~~~aS~~~~g~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~-~~   75 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGDIGSGASGRSGGLVRPGI--SSYPDPQYARLARESVEFWRELAE-EY   75 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSSTTSSGGGSSSEEEECSG--SHHSSHHHHHHHHHHHHHHHHHHH-HT
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeeccccccccccccccccccc--cccccccccchhhhhccchhhhhh-hc
Confidence            89999999999999999999  99999999999889999999999999841  111234677888888888888864 44


Q ss_pred             cc--EE-Eccc-ccccchhhhh----hcccccccchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceecccc
Q psy16975        332 GV--QV-INGY-NLAKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPWCMQ  399 (728)
Q Consensus       332 Gv--~~-~~G~-~~a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~L~~  399 (728)
                      +.  .+ ..|. .++.++.+.+    ....+++.+.++++++++++.+++|.   ....|++++ ++++||..++++|.+
T Consensus        76 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~  155 (358)
T PF01266_consen   76 GIPVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAA  155 (358)
T ss_dssp             TSSCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHH
T ss_pred             CcccccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHH
Confidence            43  23 4454 4454444432    12344566778999999999999986   235677776 689999999999999


Q ss_pred             cCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhh
Q psy16975        400 KDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQ  478 (728)
Q Consensus       400 ~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L  478 (728)
                      .++  ++|       ++|+++++ +++....+.+          .+|.+.  .+...++.||+|+     |+   |+..|
T Consensus       156 ~~~--~~G-------v~i~~~~~V~~i~~~~~~v----------~gv~~~--~g~i~ad~vV~a~-----G~---~s~~l  206 (358)
T PF01266_consen  156 EAQ--RAG-------VEIRTGTEVTSIDVDGGRV----------TGVRTS--DGEIRADRVVLAA-----GA---WSPQL  206 (358)
T ss_dssp             HHH--HTT--------EEEESEEEEEEEEETTEE----------EEEEET--TEEEEECEEEE-------GG---GHHHH
T ss_pred             HHH--Hhh-------hhccccccccchhhccccc----------cccccc--ccccccceeEecc-----cc---cceee
Confidence            999  888       99999988 5555444333          234454  3434444999999     99   99999


Q ss_pred             hhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEecccc
Q psy16975        479 CAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQ  558 (728)
Q Consensus       479 ~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~  558 (728)
                      +...+...++.|.+|+++..+....                  ....+.....  .........|++|+. |.+++|.+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~p~~-g~~~ig~~~  265 (358)
T PF01266_consen  207 LPLLGLDLPLRPVRGQVLVLEPPES------------------PLAPAILFPP--VIFGPSDGVYIRPRP-GGVLIGTAD  265 (358)
T ss_dssp             HHTTTTSSTEEEEEEEEEEEEGCCS------------------GSSSEEEEEE--ECESSCTEEEEEEET-TEEEEEESE
T ss_pred             eecccccccccccceEEEEEccCCc------------------cccccccccc--ccccccccceecccc-ccccccccc
Confidence            9888755688999999652221000                  0000000000  000012467889998 778888322


Q ss_pred             c---cC-------cccccccccchhhhhhcccccccccccccceeeeeecccccce
Q psy16975        559 D---YG-------NARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       559 e---~~-------~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd  604 (728)
                      .   ..       ..+...+.+ .+.+++++.+++|.|.+.++.+.|+|+||+++|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t~d  320 (358)
T PF01266_consen  266 GNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLLPGLGDAEVVRSWAGIRPFTPD  320 (358)
T ss_dssp             CEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEETT
T ss_pred             ccccccccccccccccccccHH-HHHhHHHHHHHHHHhhhccccccccceeeeccC
Confidence            1   11       112223344 679999999999999999999999999999999

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.96  E-value=6.5e-31  Score=297.69  Aligned_cols=340  Identities=15%  Similarity=0.115  Sum_probs=226.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCC-----CCch---hhhhhhhhc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG-----PDLE---TTKEWIRYS  319 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~-----~~~~---~~~~~~~~s  319 (728)
                      ..++||+||||||+|+||||+|++..+|.+|+|||++.++.++|++|+|++.+......     -...   .+.+.+.++
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  101 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQA  101 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHH
Confidence            34689999999999999999999933399999999999999999999997765211000     0011   222334455


Q ss_pred             ccccccccccccccE--E-Eccccc-ccchhhhhh----cccccccchh-ccccCHHHHhhcCCC-CcceeEeEE-eeee
Q psy16975        320 YDHYAGLLSENCGVQ--V-INGYNL-AKSEKQCAE----NHYLKPVLPV-YKRMSEEELAEIGPG-DWKYGIYMS-TLVI  388 (728)
Q Consensus       320 ~~~~~~l~~~~~Gv~--~-~~G~~~-a~~~~~~~~----~~~~~~~g~~-~~~L~~~el~~~~P~-~~~~G~~~~-~g~i  388 (728)
                      ++.+.++.+ +.+++  + .+|+++ +.++++.+.    ...+++.+.+ +++|+++|+.+++|. ....|++++ ++++
T Consensus       102 ~~~~~~l~~-~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~i  180 (460)
T TIGR03329       102 VLEIAAFCE-QHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASV  180 (460)
T ss_pred             HHHHHHHHH-HhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeEE
Confidence            666655553 44543  4 467654 455444321    2334456655 689999999999885 344677777 5999


Q ss_pred             cCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEE
Q psy16975        389 PNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVI  467 (728)
Q Consensus       389 dp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~vi  467 (728)
                      ||.+++.+|++.++  ++|       ++|+++|+ ++++  .+.          .+.|.+.  .+...++.||+|+    
T Consensus       181 ~P~~l~~~L~~~a~--~~G-------v~i~~~t~V~~i~--~~~----------~~~v~t~--~g~v~A~~VV~At----  233 (460)
T TIGR03329       181 QPGLLVRGLRRVAL--ELG-------VEIHENTPMTGLE--EGQ----------PAVVRTP--DGQVTADKVVLAL----  233 (460)
T ss_pred             CHHHHHHHHHHHHH--HcC-------CEEECCCeEEEEe--eCC----------ceEEEeC--CcEEECCEEEEcc----
Confidence            99999999999998  888       99999998 3333  111          1123343  3444444999999    


Q ss_pred             cccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchH--HHHHh---hce
Q psy16975        468 NGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFA--SLVRL---AGA  542 (728)
Q Consensus       468 aG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~--~~i~~---~~~  542 (728)
                       |.   |+..+++..+  .++.|+++|++.++.                     ..  +.+....++  ..+.+   ...
T Consensus       234 -ga---~s~~l~~~~~--~~~~p~~~~~~~t~p---------------------l~--~~~~~~~~~~~~~~~d~~~~~~  284 (460)
T TIGR03329       234 -NA---WMASHFPQFE--RSIAIVSSDMVITEP---------------------AP--DLLAATGLDHGTSVLDSRIFVH  284 (460)
T ss_pred             -cc---cccccChhhc--CeEEEeccceEecCC---------------------Cc--HHHHhhcCCCCceEecchhhhh
Confidence             99   9888877655  457788888542220                     00  000000000  00111   125


Q ss_pred             eeeecCCceEEeccccccCcc----cc--cccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccc
Q psy16975        543 YIIPSYGGLVTLGGTQDYGNA----RL--GVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGA  614 (728)
Q Consensus       543 YiiP~~dG~vviGgt~e~~~~----d~--~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~  614 (728)
                      |+.|..+|++++|+......+    +.  .......+.+.+.+.++||.|.+.++.+.|+|+||+|+|  +.|.      
T Consensus       285 y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~t~D~~P~iG------  358 (460)
T TIGR03329       285 YYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRKFFPALAEVPIAASWNGPSDRSVTGLPFFG------  358 (460)
T ss_pred             heeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCCCCCCCceee------
Confidence            889999999999975422111    11  111223567889999999999999999999999999999  2221      


Q ss_pred             cceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeec
Q psy16975        615 AQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNY  694 (728)
Q Consensus       615 ~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~y  694 (728)
                                                                                         +..+ .-.||.+.
T Consensus       359 -------------------------------------------------------------------~~~~-~~gl~~a~  370 (460)
T TIGR03329       359 -------------------------------------------------------------------RLNG-QPNVFYGF  370 (460)
T ss_pred             -------------------------------------------------------------------eecC-CCCEEEEe
Confidence                                                                               1110 01388999


Q ss_pred             ccCccccccCCCCceeeeeeeecc
Q psy16975        695 GHGGYGVTSAPGSARCAVSVFEQS  718 (728)
Q Consensus       695 Ghgg~G~t~s~g~A~~~~~l~~~~  718 (728)
                      ||+|+|+++|+.+|+.+++++.+.
T Consensus       371 G~~G~Gv~~a~~~G~~lA~li~g~  394 (460)
T TIGR03329       371 GYSGNGVAPSRMGGQILSSLVLGL  394 (460)
T ss_pred             CcCCCChhHHHHHHHHHHHHhcCC
Confidence            999999999999999999998763

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.96  E-value=1.7e-30  Score=288.17  Aligned_cols=343  Identities=17%  Similarity=0.179  Sum_probs=233.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS  328 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~  328 (728)
                      ++||+||||||+|+++||+|++..+|++|+||||.. ++.++|++|+|++++..+. . ......+|+.++.+.|.++.+
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~   79 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYY-T-PGSLKARFCRRGNEATKAFCD   79 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEcccccc-C-cHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999932399999999985 7789999999999884321 1 223456788888888888764


Q ss_pred             cccccEE-Eccccc-ccchhhhhh----cccccccchhccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceeccccc
Q psy16975        329 ENCGVQV-INGYNL-AKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQK  400 (728)
Q Consensus       329 ~~~Gv~~-~~G~~~-a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~  400 (728)
                       +.++.+ +.|.++ +.++++.+.    ....+..+..+++++.+++++++|. ....|++++ ++++||..++.+|.+.
T Consensus        80 -~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~  158 (393)
T PRK11728         80 -QHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAEL  158 (393)
T ss_pred             -HcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHH
Confidence             556665 557544 445444322    1233455667899999999999995 224567777 5999999999999999


Q ss_pred             CCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhh
Q psy16975        401 DGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQC  479 (728)
Q Consensus       401 a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~  479 (728)
                      ++  ++|       ++++++++ .++....+.+           .+.+.  .+...++.||+|+     |.   |+..++
T Consensus       159 ~~--~~G-------v~i~~~~~V~~i~~~~~~~-----------~V~~~--~g~i~ad~vV~A~-----G~---~s~~l~  208 (393)
T PRK11728        159 IQ--ARG-------GEIRLGAEVTALDEHANGV-----------VVRTT--QGEYEARTLINCA-----GL---MSDRLA  208 (393)
T ss_pred             HH--hCC-------CEEEcCCEEEEEEecCCeE-----------EEEEC--CCEEEeCEEEECC-----Cc---chHHHH
Confidence            98  888       88888877 3343222211           12222  2233344999999     99   998887


Q ss_pred             hhccc--ccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccc
Q psy16975        480 AENHY--LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGT  557 (728)
Q Consensus       480 ~~~gi--~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt  557 (728)
                      ...++  ..++.|+|||++..+...  +      ....+++.    ..|  ..     .+...+.|+.|+.+|++++|++
T Consensus       209 ~~~g~~~~~~v~p~rGq~~~~~~~~--~------~~~~~~v~----~~p--~~-----~~~~~g~~~~p~~~G~~~~G~~  269 (393)
T PRK11728        209 KMAGLEPDFRIVPFRGEYYRLAPEK--N------QLVNHLIY----PVP--DP-----AFPFLGVHLTRMIDGSVTVGPN  269 (393)
T ss_pred             HHhCCCCCCceEEeeeEEEEecccc--c------cccCCcee----cCC--CC-----CCCcceEEeecCCCCCEEECCC
Confidence            76654  267899999975322110  0      00000011    001  00     0012357999999999999974


Q ss_pred             ccc----Cccccc-c---------------------cccchhhh---------hhcccccccccccccceeeeeeccc--
Q psy16975        558 QDY----GNARLG-V---------------------DRFDSRAI---------LNRTAAVRPEILAAPVEKVWVGLRP--  600 (728)
Q Consensus       558 ~e~----~~~d~~-~---------------------~~~~~~~l---------l~~~~~l~P~L~~~~I~~~waGlRP--  600 (728)
                      ...    .+++.. .                     +.+.++++         ++.+.+++|.|...++.+.|+|+||  
T Consensus       270 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~  349 (393)
T PRK11728        270 AVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQA  349 (393)
T ss_pred             cceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeee
Confidence            432    223321 1                     33344555         5999999999999999999999999  


Q ss_pred             ccceeeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceE
Q psy16975        601 YRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHV  680 (728)
Q Consensus       601 ~tpd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~  680 (728)
                      .++|-..+                                                   .|+||+-.             
T Consensus       350 ~~~d~~~~---------------------------------------------------~d~~i~~~-------------  365 (393)
T PRK11728        350 VSRDGKLV---------------------------------------------------DDFLFVET-------------  365 (393)
T ss_pred             eCCCCCcc---------------------------------------------------CceEEecC-------------
Confidence            88871110                                                   24454421             


Q ss_pred             EeecCceEEEEeecccCccccccCCCCceeeeeee
Q psy16975        681 IPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVF  715 (728)
Q Consensus       681 ~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~  715 (728)
                         ++    .+|.-|.-+.|+|+|+++|+.|++++
T Consensus       366 ---~~----~~~~~~~~spg~t~s~~ia~~v~~~~  393 (393)
T PRK11728        366 ---PR----SLHVCNAPSPAATSSLPIGEHIVSKV  393 (393)
T ss_pred             ---CC----EEEEcCCCCchHHccHHHHHHHHhhC
Confidence               22    67889999999999999999988764

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.95  E-value=3.5e-30  Score=282.79  Aligned_cols=335  Identities=12%  Similarity=0.054  Sum_probs=226.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      +++||+||||||+|+++||+|++  +|++|+|||++.++.  ++|..++++++..+  ..  .....+++.++.+.|.++
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~--~~--~~~~~~l~~~s~~~~~~l   75 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPPHQQGSSHGDTRIIRHAY--GE--GPAYVPLVLRAQELWREL   75 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCCCCCcCcCCcceEEEeec--cC--CchhhHHHHHHHHHHHHH
Confidence            46899999999999999999999  899999999987653  45556666666521  11  124567788888888877


Q ss_pred             cccccccE-E-Ecccccc-cchhh-hh-hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceec
Q psy16975        327 LSENCGVQ-V-INGYNLA-KSEKQ-CA-ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPW  396 (728)
Q Consensus       327 ~~~~~Gv~-~-~~G~~~a-~~~~~-~~-~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~  396 (728)
                      .+ +.+.+ + .+|+++. .++.+ ++ ....+++.+.+.++++++++.+++|.    ....|++++ +|++||..++.+
T Consensus        76 ~~-~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~  154 (376)
T PRK11259         76 ER-ESGEPLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKA  154 (376)
T ss_pred             HH-HhCCccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHH
Confidence            63 44543 2 5676443 22221 11 12334556778899999999999985    233567776 599999999999


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccc
Q psy16975        397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKS  475 (728)
Q Consensus       397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S  475 (728)
                      +++.+.  +.|       ++|+++++ +++....+.+           .+.+.  .+...++.||+|+     |.   |+
T Consensus       155 ~~~~~~--~~g-------v~i~~~~~v~~i~~~~~~~-----------~v~~~--~g~~~a~~vV~A~-----G~---~~  204 (376)
T PRK11259        155 HLRLAR--EAG-------AELLFNEPVTAIEADGDGV-----------TVTTA--DGTYEAKKLVVSA-----GA---WV  204 (376)
T ss_pred             HHHHHH--HCC-------CEEECCCEEEEEEeeCCeE-----------EEEeC--CCEEEeeEEEEec-----Cc---ch
Confidence            999988  778       89998888 4444322211           23333  2333344999999     99   99


Q ss_pred             hhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH-hhceeeeecCCce-EE
Q psy16975        476 EKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR-LAGAYIIPSYGGL-VT  553 (728)
Q Consensus       476 ~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~-~~~~YiiP~~dG~-vv  553 (728)
                      ..|+...  .+|+.|.++|++.++...    .          .. .....|.+..     ... +...|++|+.+++ ++
T Consensus       205 ~~l~~~~--~~~i~~~~~~~~~~~~~~----~----------~~-~~~~~p~~~~-----~~~~~~~~y~~p~~~~~~l~  262 (376)
T PRK11259        205 KDLLPPL--ELPLTPVRQVLAWFQADG----R----------YS-EPNRFPAFIW-----EVPDGDQYYGFPAENGPGLK  262 (376)
T ss_pred             hhhcccc--cCCceEEEEEEEEEecCC----c----------cC-CccCCCEEEE-----ecCCCceeEeccCCCCCceE
Confidence            9988764  378899999964221100    0          00 0000121110     011 2337889998888 99


Q ss_pred             ecccccc------Cccccccc-ccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeee
Q psy16975        554 LGGTQDY------GNARLGVD-RFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVF  624 (728)
Q Consensus       554 iGgt~e~------~~~d~~~~-~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~  624 (728)
                      +|++...      .+.+...+ ++..+.+++.+.++||.+.+  +.+.|+|+||+|+|  +.|..               
T Consensus       263 ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~t~D~~P~ig~---------------  325 (376)
T PRK11259        263 IGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP--CLRGAACTYTNTPDEHFIIDT---------------  325 (376)
T ss_pred             EEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc--cccceEEecccCCCCCceeec---------------
Confidence            9988752      11122222 44578899999999998877  88899999999999  32211               


Q ss_pred             EEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccC
Q psy16975        625 KVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSA  704 (728)
Q Consensus       625 ~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s  704 (728)
                                                                                +.+ .-.|+.+.||+|+|++++
T Consensus       326 ----------------------------------------------------------~~~-~~gl~~~~G~~g~G~~~a  346 (376)
T PRK11259        326 ----------------------------------------------------------LPG-HPNVLVASGCSGHGFKFA  346 (376)
T ss_pred             ----------------------------------------------------------CCC-CCCEEEEecccchhhhcc
Confidence                                                                      100 013789999999999999


Q ss_pred             CCCceeeeeeeecc
Q psy16975        705 PGSARCAVSVFEQS  718 (728)
Q Consensus       705 ~g~A~~~~~l~~~~  718 (728)
                      |++|+.+++|+.+.
T Consensus       347 p~~g~~la~li~~~  360 (376)
T PRK11259        347 SVLGEILADLAQDG  360 (376)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999764

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.95  E-value=6.1e-29  Score=273.56  Aligned_cols=346  Identities=23%  Similarity=0.258  Sum_probs=229.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLL  327 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~  327 (728)
                      ++++||+||||||+|++|||+|++  .|.+|+|+|++.++.++|++++|.+...... .........+...+...|.++.
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   78 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAGGGAAGRNAGGILAPWAS-PGGELEVRPLADLSLALWRELS   78 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccCCcchhcchhhhcccccc-CCccchhhhhhHHHHHHHHHHH
Confidence            457899999999999999999999  8999999999998888998887777664211 1111123334444444444433


Q ss_pred             ccccc--cEE-Eccc-ccccchh-----hh-hhcccccccchhccccCHHHHhhcCCC---C-cceeEeEE-eeeecCcc
Q psy16975        328 SENCG--VQV-INGY-NLAKSEK-----QC-AENHYLKPVLPVYKRMSEEELAEIGPG---D-WKYGIYMS-TLVIPNRI  392 (728)
Q Consensus       328 ~~~~G--v~~-~~G~-~~a~~~~-----~~-~~~~~~~~~g~~~~~L~~~el~~~~P~---~-~~~G~~~~-~g~idp~~  392 (728)
                      . ..+  ..+ ..+. .+...+.     +. .....++......++++..++.+++|.   + ...|++++ ++++||..
T Consensus        79 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~  157 (387)
T COG0665          79 E-ELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRL  157 (387)
T ss_pred             H-HhCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHH
Confidence            2 111  112 3333 2222221     11 111222233333367899999888886   2 34566776 59999999


Q ss_pred             ceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccc
Q psy16975        393 FLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYN  471 (728)
Q Consensus       393 ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~  471 (728)
                      |+..|++.+.  ++|.      +.++++++ ..+...          . +.+.+.|.  .+.+.++.||+|+     |. 
T Consensus       158 ~~~~l~~~~~--~~G~------~~~~~~~~~~~~~~~----------~-~~~~v~t~--~g~i~a~~vv~a~-----G~-  210 (387)
T COG0665         158 LTRALAAAAE--ELGV------VIIEGGTPVTSLERD----------G-RVVGVETD--GGTIEADKVVLAA-----GA-  210 (387)
T ss_pred             HHHHHHHHHH--hcCC------eEEEccceEEEEEec----------C-cEEEEEeC--CccEEeCEEEEcC-----ch-
Confidence            9999999998  8771      34444555 222211          1 22345555  4433344999999     99 


Q ss_pred             cccchhhhhhcc-cccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCc
Q psy16975        472 LAKSEKQCAENH-YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGG  550 (728)
Q Consensus       472 ~~~S~~L~~~~g-i~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG  550 (728)
                        |+..+.+..+ +.+++.|++||++.++....              ... ....+ ...     .......|++|..++
T Consensus       211 --~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~--------------~~~-~~~~~-~~~-----~~~~~~~y~~~~~~g  267 (387)
T COG0665         211 --WAGELAATLGELPLPLRPVRGQALTTEPPEG--------------LLA-DGLAP-VVL-----VVDDGGGYIRPRGDG  267 (387)
T ss_pred             --HHHHHHHhcCCCcCccccccceEEEecCCCc--------------ccc-ccccc-eEE-----EecCCceEEEEcCCC
Confidence              9999988877 66789999999653221100              000 00000 000     123567999999999


Q ss_pred             eEEeccccccC-cccccccccc--hhhhhhcccccccccccccceeeeeeccccc-ce--eeeeeccccccceeeeeeee
Q psy16975        551 LVTLGGTQDYG-NARLGVDRFD--SRAILNRTAAVRPEILAAPVEKVWVGLRPYR-HH--VRVERDLTGAAQYLTWYPVF  624 (728)
Q Consensus       551 ~vviGgt~e~~-~~d~~~~~~~--~~~ll~~~~~l~P~L~~~~I~~~waGlRP~t-pd--~Rie~e~~~~~~~~~~l~~~  624 (728)
                      ++++|++.+.. +++..+....  ...+++.+.+++|.|.+..+.+.|+|+||++ +|  +.|..               
T Consensus       268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t~pd~~P~iG~---------------  332 (387)
T COG0665         268 RLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRPPTTPDGLPVIGR---------------  332 (387)
T ss_pred             cEEEeecccccCCCCccccCcchhHHHHHHHHHHhCccccccccceeeeccccCCCCCCCceeCC---------------
Confidence            99999998886 3555554444  6799999999999999999999999999987 98  22211               


Q ss_pred             EEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccC
Q psy16975        625 KVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSA  704 (728)
Q Consensus       625 ~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s  704 (728)
                                                                             ..|..    .|+.+.||+|+|++++
T Consensus       333 -------------------------------------------------------~~~~~----~l~~a~G~~~~G~~~~  353 (387)
T COG0665         333 -------------------------------------------------------AAPLP----NLYVATGHGGHGFTLA  353 (387)
T ss_pred             -------------------------------------------------------CCCCC----CEEEEecCCCcChhhc
Confidence                                                                   00112    3899999999999999


Q ss_pred             CCCceeeeeeeeccccc
Q psy16975        705 PGSARCAVSVFEQSHKA  721 (728)
Q Consensus       705 ~g~A~~~~~l~~~~~~~  721 (728)
                      +++|+.+|++|.+....
T Consensus       354 p~~g~~lA~li~g~~~~  370 (387)
T COG0665         354 PALGRLLADLILGGEPE  370 (387)
T ss_pred             cHHHHHHHHHHcCCCCC
Confidence            99999999999885443

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.95  E-value=7.3e-29  Score=272.77  Aligned_cols=337  Identities=15%  Similarity=0.113  Sum_probs=225.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc--ccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS  328 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g--~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~  328 (728)
                      +||+||||||+|+|+||+|++  +|++|+|||+..++  .++|..++++++...   .  .....++++++.+.|.++.+
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~---~--~~~~~~l~~~s~~~~~~l~~   73 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY---P--EDFYTPMMLECYQLWAQLEK   73 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCCCCCCCCeeeeecc---C--chhHhHHHHHHHHHHHHHHH
Confidence            589999999999999999999  89999999997654  245556667766521   1  22466788888888888763


Q ss_pred             cccccE--EEccccc-ccchhh-hh-hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceeccc
Q psy16975        329 ENCGVQ--VINGYNL-AKSEKQ-CA-ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPWCM  398 (728)
Q Consensus       329 ~~~Gv~--~~~G~~~-a~~~~~-~~-~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~L~  398 (728)
                       +.+++  .++|+++ +.++++ ++ ....+++.+.+.+.|+++|+.+++|.    ....|++++ ++++||..++++|.
T Consensus        74 -~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~  152 (380)
T TIGR01377        74 -EAGTKLHRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQ  152 (380)
T ss_pred             -HhCCeeEeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHH
Confidence             45544  3567644 333221 11 22344567778899999999999995    123466666 59999999999999


Q ss_pred             ccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchh
Q psy16975        399 QKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEK  477 (728)
Q Consensus       399 ~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~  477 (728)
                      +.++  ++|       ++++++|+ ++++...+.+           .+.+.  .+.+.++.||+|+     |.   |+..
T Consensus       153 ~~~~--~~g-------~~~~~~~~V~~i~~~~~~~-----------~v~~~--~~~i~a~~vV~aa-----G~---~~~~  202 (380)
T TIGR01377       153 ELAE--AHG-------ATVRDGTKVVEIEPTELLV-----------TVKTT--KGSYQANKLVVTA-----GA---WTSK  202 (380)
T ss_pred             HHHH--HcC-------CEEECCCeEEEEEecCCeE-----------EEEeC--CCEEEeCEEEEec-----Cc---chHH
Confidence            9988  778       88888887 3443222111           12222  2233344999999     99   9999


Q ss_pred             hhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCc-eEEecc
Q psy16975        478 QCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGG-LVTLGG  556 (728)
Q Consensus       478 L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG-~vviGg  556 (728)
                      |....++.+|+.|.++|+...+...  +...         ..  ....|....     .-.....|++|..++ .+++|+
T Consensus       203 l~~~~g~~~~~~~~~~~~~~~~~~~--~~~~---------~~--~~~~p~~~~-----~~~~~~~y~~p~~~~~~~~~~~  264 (380)
T TIGR01377       203 LLSPLGIEIPLQPLRINVCYWREKE--PGSY---------GV--SQAFPCFLV-----LGLNPHIYGLPSFEYPGLMKVY  264 (380)
T ss_pred             HhhhcccCCCceEEEEEEEEEecCC--cccc---------Cc--cCCCCEEEE-----eCCCCceEecCCCCCCceEEEE
Confidence            9888777788999999853111000  0000         00  001121110     000235788998642 466654


Q ss_pred             cccc-------Ccccccccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeeeEEe
Q psy16975        557 TQDY-------GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVY  627 (728)
Q Consensus       557 t~e~-------~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~  627 (728)
                      ....       .+++..++.+..+.+.+.+.+++|.|.... .+.|.|+||+|+|  +.|...     +           
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~t~D~~piIg~~-----p-----------  327 (380)
T TIGR01377       265 YHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNGEP-KKGEVCMYTNTPDEHFVIDLH-----P-----------  327 (380)
T ss_pred             eCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCCCc-ceeeEEEeccCCCCCeeeecC-----C-----------
Confidence            3221       223344666778999999999999998644 5789999999999  322210     0           


Q ss_pred             ceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCC
Q psy16975        628 GITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGS  707 (728)
Q Consensus       628 G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~  707 (728)
                                                                            ..+    +++.+.||+|+||+++|++
T Consensus       328 ------------------------------------------------------~~~----~l~va~G~~g~G~~~~p~~  349 (380)
T TIGR01377       328 ------------------------------------------------------KYD----NVVIGAGFSGHGFKLAPVV  349 (380)
T ss_pred             ------------------------------------------------------CCC----CEEEEecCCccceeccHHH
Confidence                                                                  012    3889999999999999999


Q ss_pred             ceeeeeeeecc
Q psy16975        708 ARCAVSVFEQS  718 (728)
Q Consensus       708 A~~~~~l~~~~  718 (728)
                      |+.+++||.+.
T Consensus       350 g~~la~li~~~  360 (380)
T TIGR01377       350 GKILAELAMKL  360 (380)
T ss_pred             HHHHHHHHhcC
Confidence            99999998764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.95  E-value=1e-28  Score=285.08  Aligned_cols=299  Identities=11%  Similarity=0.104  Sum_probs=204.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS  328 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~  328 (728)
                      ..+||+||||||+|+++||+|++  +|++|+|||++.++.+||++|+|++++....... .....+.+.+..+.|.++..
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~-~~~~~~~~~~e~~~l~~~a~   81 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDIATGATGRNHGLLHSGARYAVT-DAESARECISENQILKRIAR   81 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCCCCCcccccccceeccchhccc-CHHHHHHHHHHHHHHHHhch
Confidence            36899999999999999999999  9999999999988999999999999874321111 22334444444455555442


Q ss_pred             cccccEEEcccccccchhhhh----hcccccccchhccccCHHHHhhcCCC---CcceeEeEEeeeecCccceecccccC
Q psy16975        329 ENCGVQVINGYNLAKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMSTLVIPNRIFLPWCMQKD  401 (728)
Q Consensus       329 ~~~Gv~~~~G~~~a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~~g~idp~~ll~~L~~~a  401 (728)
                       .+ +....++.++..+++..    ........+.+.++|+++|+.+++|.   ...+|++++++++||..++.+++..+
T Consensus        82 -~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A  159 (546)
T PRK11101         82 -HC-VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDA  159 (546)
T ss_pred             -Hh-hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHH
Confidence             21 22223444443332221    11223455677899999999999996   34577888899999999999999999


Q ss_pred             CCCCCCCCCceeeEEEEEeeC-ceeEEEecccccc-ccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhh
Q psy16975        402 GPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQC  479 (728)
Q Consensus       402 ~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~  479 (728)
                      .  ++|       ++|+++|+ +++....+.+..- +.+      ..+. ..+.+.++.|||||     |+   |+..+.
T Consensus       160 ~--~~G-------a~i~~~t~V~~i~~~~~~v~gv~v~d------~~~g-~~~~i~A~~VVnAa-----G~---wa~~l~  215 (546)
T PRK11101        160 K--EHG-------AQILTYHEVTGLIREGDTVCGVRVRD------HLTG-ETQEIHAPVVVNAA-----GI---WGQHIA  215 (546)
T ss_pred             H--hCC-------CEEEeccEEEEEEEcCCeEEEEEEEE------cCCC-cEEEEECCEEEECC-----Ch---hHHHHH
Confidence            8  888       99999999 5554433322110 100      0011 01234455999999     99   999998


Q ss_pred             hhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHH-HhhceeeeecCCceEEecccc
Q psy16975        480 AENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLV-RLAGAYIIPSYGGLVTLGGTQ  558 (728)
Q Consensus       480 ~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i-~~~~~YiiP~~dG~vviGgt~  558 (728)
                      ...+...++.|.|||++.++                     .......+..     +. .....|++| .++.+++|.|.
T Consensus       216 ~~~g~~~~i~p~kG~~lv~~---------------------~~~~~~vi~~-----~~~~~~~~~~vp-~~~~~liGtT~  268 (546)
T PRK11101        216 EYADLRIRMFPAKGSLLIMD---------------------HRINNHVINR-----CRKPADADILVP-GDTISLIGTTS  268 (546)
T ss_pred             HhcCCCCceeecceEEEEEC---------------------CccCceeEec-----cCCCCCCCEEEe-cCCEEEEeeCC
Confidence            87776788999999965221                     1000000000     00 012345666 45678999988


Q ss_pred             ccCc----ccccccccchhhhhhcccccccccccccceeeeeecccccc
Q psy16975        559 DYGN----ARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH  603 (728)
Q Consensus       559 e~~~----~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tp  603 (728)
                      +..+    .+..++.+.++.|++.+.+++|.|...+|++.|+|+||...
T Consensus       269 ~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~  317 (546)
T PRK11101        269 TRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRPLVA  317 (546)
T ss_pred             CCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCccCEEEEEEEeccCCC
Confidence            6532    23678889999999999999999999999999999999854

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=99.94  E-value=1.5e-28  Score=265.00  Aligned_cols=317  Identities=18%  Similarity=0.179  Sum_probs=228.8

Q ss_pred             HHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc---cccc--cEE-Ecccc
Q psy16975        267 LELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS---ENCG--VQV-INGYN  340 (728)
Q Consensus       267 ~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~---~~~G--v~~-~~G~~  340 (728)
                      |+|++  +|.+|+|||+..++.++|++|+|++++.... ........+|+.++.+.|.++.+   ...+  +.+ +.|++
T Consensus         1 ~~La~--~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~-~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l   77 (337)
T TIGR02352         1 WELAK--RGHSVTLFDRDPMGGGASWAAAGMLAPHAEC-EYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTL   77 (337)
T ss_pred             ChHHH--CCCceEEEcCCCCCcccchhhhcCccccccc-ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEE
Confidence            68999  8999999999988899999999999884311 10122467778888888876653   1123  334 55764


Q ss_pred             -cccchhhhhh----cccccccchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceecccccCCCCCCCCCCc
Q psy16975        341 -LAKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPS  411 (728)
Q Consensus       341 -~a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~  411 (728)
                       ++.++++.+.    ....+..+.++++|+++|+++++|.   +...|++++ +|++||..++.+|++.+.  ++|    
T Consensus        78 ~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~--~~g----  151 (337)
T TIGR02352        78 VVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALE--KLG----  151 (337)
T ss_pred             EEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHH--HcC----
Confidence             4555444322    1233456778999999999999885   345678877 699999999999999998  888    


Q ss_pred             eeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccch
Q psy16975        412 TLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLP  490 (728)
Q Consensus       412 ~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~P  490 (728)
                         ++++++++ +++...++.          ++.|.+.  .+...++.||+|+     |+   |+..|++     +++.|
T Consensus       152 ---~~~~~~~~v~~i~~~~~~----------~~~v~~~--~g~~~a~~vV~a~-----G~---~~~~l~~-----~~~~~  203 (337)
T TIGR02352       152 ---VEIIEHTEVQHIEIRGEK----------VTAIVTP--SGDVQADQVVLAA-----GA---WAGELLP-----LPLRP  203 (337)
T ss_pred             ---CEEEccceEEEEEeeCCE----------EEEEEcC--CCEEECCEEEEcC-----Ch---hhhhccc-----CCccc
Confidence               99999988 455433222          2233443  3333344999999     99   9998865     46899


Q ss_pred             hccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccccccCccccccccc
Q psy16975        491 VYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRF  570 (728)
Q Consensus       491 vRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~  570 (728)
                      ++||++.++...                . .....|. ..     .+.+...|++|..+|++++|++.+...++..++.+
T Consensus       204 ~~g~~~~~~~~~----------------~-~~~~~~~-~~-----~~~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~  260 (337)
T TIGR02352       204 VRGQPLRLEAPA----------------V-PLLNRPL-RA-----VVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLG  260 (337)
T ss_pred             cCceEEEeeccc----------------c-ccCCccc-ce-----EEEcCCEEEEEcCCCeEEEEEeccccCccCCCCHH
Confidence            999964221100                0 0000011 00     11245689999999999999999887788778888


Q ss_pred             chhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhh
Q psy16975        571 DSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEK  648 (728)
Q Consensus       571 ~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~  648 (728)
                      ..+.+++++.++||.+.+.++.+.|+|+||+++|  +.|....                                     
T Consensus       261 ~~~~l~~~~~~~~P~l~~~~~~~~~~g~r~~t~D~~piig~~~-------------------------------------  303 (337)
T TIGR02352       261 GIKELLRDAYTILPALKEARLLETWAGLRPGTPDNLPYIGEHP-------------------------------------  303 (337)
T ss_pred             HHHHHHHHHHHhCCCcccCcHHHheecCCCCCCCCCCEeCccC-------------------------------------
Confidence            9999999999999999999999999999999999  3332100                                     


Q ss_pred             hhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeec
Q psy16975        649 YISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ  717 (728)
Q Consensus       649 ~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~  717 (728)
                                                       ...    .||.+.||||.|++++|++|+.+|++|.+
T Consensus       304 ---------------------------------~~~----~~~~~~g~~g~G~~~~p~~g~~la~~i~~  335 (337)
T TIGR02352       304 ---------------------------------EDR----RLLIATGHYRNGILLAPATAEVIADLILG  335 (337)
T ss_pred             ---------------------------------CCC----CEEEEcccccCceehhhHHHHHHHHHHhc
Confidence                                             011    38999999999999999999999998864

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.94  E-value=3.9e-28  Score=277.84  Aligned_cols=304  Identities=13%  Similarity=0.057  Sum_probs=192.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      |+.++||+||||||+|+++||+|++  +|++|+|||++..+++||++++++++......   .....++.+++...+..+
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl---~~~~~~l~~e~~~e~~~l   77 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYL---EYYEFRLVREALIEREVL   77 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCCchhhhhhHHHHHHHH---HhccHHHHHHHHHHHHHH
Confidence            5667999999999999999999999  99999999999999999999999987632110   111334444444443333


Q ss_pred             cccccccEEEcccccccchhhhh---------hcccc--cccchhccccCHHHHhhcCCC--CcceeEeEEeeeecCccc
Q psy16975        327 LSENCGVQVINGYNLAKSEKQCA---------ENHYL--KPVLPVYKRMSEEELAEIGPG--DWKYGIYMSTLVIPNRIF  393 (728)
Q Consensus       327 ~~~~~Gv~~~~G~~~a~~~~~~~---------~~~~~--~~~g~~~~~L~~~el~~~~P~--~~~~G~~~~~g~idp~~l  393 (728)
                      .+...++....++.+..++.+..         ....+  .......+.++.+++.+.+|.  ....++.+.++++||..+
T Consensus        78 ~~~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl  157 (502)
T PRK13369         78 LAAAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARL  157 (502)
T ss_pred             HHhCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHH
Confidence            32111111111222222211110         00111  111233566777766554553  345666667899999999


Q ss_pred             eecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccc
Q psy16975        394 LPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNL  472 (728)
Q Consensus       394 l~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~  472 (728)
                      +.+|+..+.  ++|       ++++++++ +++....+.+...+.++     . ..  .....++.||||+     |+  
T Consensus       158 ~~~l~~~a~--~~G-------a~i~~~~~V~~i~~~~~~~~v~~~~~-----~-g~--~~~i~a~~VVnAa-----G~--  213 (502)
T PRK13369        158 VVLNALDAA--ERG-------ATILTRTRCVSARREGGLWRVETRDA-----D-GE--TRTVRARALVNAA-----GP--  213 (502)
T ss_pred             HHHHHHHHH--HCC-------CEEecCcEEEEEEEcCCEEEEEEEeC-----C-CC--EEEEEecEEEECC-----Cc--
Confidence            999999998  888       99999998 45543322111001100     0 00  0123444999999     99  


Q ss_pred             ccchhhhhhc-ccc--cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCC
Q psy16975        473 AKSEKQCAEN-HYL--KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYG  549 (728)
Q Consensus       473 ~~S~~L~~~~-gi~--lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~d  549 (728)
                       |+.++.... +..  .++.|.||+.+.                     ++.....+....  ++ .-.....|++|..+
T Consensus       214 -wa~~l~~~~~g~~~~~~v~p~kG~~lv---------------------~~~~~~~~~~~~--~~-~~dgr~~~i~P~~~  268 (502)
T PRK13369        214 -WVTDVIHRVAGSNSSRNVRLVKGSHIV---------------------VPKFWDGAQAYL--FQ-NPDKRVIFANPYEG  268 (502)
T ss_pred             -cHHHHHhhccCCCCCcceEEeeEEEEE---------------------eCCccCCCceEE--Ee-CCCCeEEEEEEecC
Confidence             999887632 322  458999998532                     110000000000  00 00122368999988


Q ss_pred             ceEEeccccccC---cccccccccchhhhhhccccccc-ccccccceeeeeecccccce
Q psy16975        550 GLVTLGGTQDYG---NARLGVDRFDSRAILNRTAAVRP-EILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       550 G~vviGgt~e~~---~~d~~~~~~~~~~ll~~~~~l~P-~L~~~~I~~~waGlRP~tpd  604 (728)
                      +.+++|+|....   .++..+++++++.|++.+.++|| .|...+|++.|+|+||.++|
T Consensus       269 ~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d  327 (502)
T PRK13369        269 DFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGVRPLFDD  327 (502)
T ss_pred             CEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCC
Confidence            888999997652   25788899999999999999997 89999999999999999976

>KOG2844|consensus

Probab=99.93  E-value=1.4e-26  Score=257.55  Aligned_cols=295  Identities=20%  Similarity=0.164  Sum_probs=216.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEE-eecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTV-IADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtV-IEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      +...||+|||||+.|+++||||++  +|.++.| +|+....+++++.++|++...  +..  +.....++..+...+.++
T Consensus        37 ~~~A~vvViggG~~g~~~~yhlak--~g~k~avlle~~~ltsgttwhtagl~~~l--r~~--dv~~qlia~~~~~l~~~l  110 (856)
T KOG2844|consen   37 PSTADVVVIGGGSLGCSTAYHLAK--RGMKGAVLLERSRLTSGTTWHTAGLLWQL--FPS--DVELQLIAHTSRVLYREL  110 (856)
T ss_pred             CCcccEEEEcCCchhHHHHHHHHH--ccccceEEEeeeeeccccccccccceeec--cCC--chhHHHHHHHHHHHHHHH
Confidence            456799999999999999999999  9999554 555566778888888887662  111  122333444445555566


Q ss_pred             cccccccE--E-Ecc-cccccchhhhhhcccc----cccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccc
Q psy16975        327 LSENCGVQ--V-ING-YNLAKSEKQCAENHYL----KPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIF  393 (728)
Q Consensus       327 ~~~~~Gv~--~-~~G-~~~a~~~~~~~~~~~~----~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~l  393 (728)
                      . +++|..  + ++| +.++.+...+.+.+.+    ..++...++|+++|.++++|.    ++.+|++.| +|.+||..+
T Consensus       111 e-eEtgl~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~l  189 (856)
T KOG2844|consen  111 E-EETGLHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGL  189 (856)
T ss_pred             H-HhcCCCcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHH
Confidence            6 477876  3 555 6677776654333222    346788999999999999997    456778778 699999999


Q ss_pred             eecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccc
Q psy16975        394 LPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNL  472 (728)
Q Consensus       394 l~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~  472 (728)
                      |++|++.|+  +.|       |.|++||+ +++.+..+.+          ++|+|.  .|..++.+|||||     |.  
T Consensus       190 C~ala~~A~--~~G-------A~viE~cpV~~i~~~~~~~----------~gVeT~--~G~iet~~~VNaa-----Gv--  241 (856)
T KOG2844|consen  190 CQALARAAS--ALG-------ALVIENCPVTGLHVETDKF----------GGVETP--HGSIETECVVNAA-----GV--  241 (856)
T ss_pred             HHHHHHHHH--hcC-------cEEEecCCcceEEeecCCc----------cceecc--CcceecceEEech-----hH--
Confidence            999999999  888       99999999 5666544333          378887  6666666999999     99  


Q ss_pred             ccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH--hhceeeeecCCc
Q psy16975        473 AKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR--LAGAYIIPSYGG  550 (728)
Q Consensus       473 ~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~--~~~~YiiP~~dG  550 (728)
                       |++++..+.++..|++|+..+                  |++|-.++.....+  .+     +++  +...|+..+.++
T Consensus       242 -WAr~Vg~m~gvkvPL~p~~H~------------------YvvT~~IeGi~s~t--~p-----~irD~DgSvylR~~~~g  295 (856)
T KOG2844|consen  242 -WAREVGAMAGVKVPLVPMHHA------------------YVVTSRIEGVSSLT--RP-----NIRDLDGSVYLRQQGDG  295 (856)
T ss_pred             -HHHHhhhhcCCcccceeeeee------------------EEEecccCCccCCC--cc-----ceecccceEEEEecCCc
Confidence             999998888888999999887                  34443443211111  11     233  567888888877


Q ss_pred             eEEeccccccCc-----------ccccccccchhhhhhcccccccccccccceeeeeecccccce
Q psy16975        551 LVTLGGTQDYGN-----------ARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       551 ~vviGgt~e~~~-----------~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd  604 (728)
                       +..||.....-           --.++|.+..+..++.+.+++|.|+++.|.+.-+|...+|||
T Consensus       296 -il~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l~k~~i~~~v~gpe~ftPD  359 (856)
T KOG2844|consen  296 -ILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVLEKAGIKSLVNGPETFTPD  359 (856)
T ss_pred             -eeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhCchhhhcCccceecCccccCCc
Confidence             77777643310           012367777889999999999999999999999999999999

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=99.92  E-value=1e-26  Score=256.89  Aligned_cols=337  Identities=18%  Similarity=0.160  Sum_probs=221.8

Q ss_pred             hHHHhhhhCCCCcEEEeecc-cccccCCCCccccccCCCCCCCCCchhhhhhhh----hcccccccccccccccE--E-E
Q psy16975        265 TALELQRRFPNCDVTVIADK-FNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIR----YSYDHYAGLLSENCGVQ--V-I  336 (728)
Q Consensus       265 tA~~La~~~~G~~VtVIEk~-~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~----~s~~~~~~l~~~~~Gv~--~-~  336 (728)
                      |||+|++  +|++|+|||++ .++.++|++++|++++...  ... ....++..    ++.+.|.++.+  .+.+  + +
T Consensus         1 ~A~~La~--~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~--~~~-~~~~~l~~~~~~~a~~l~~~l~~--~~~~~~~~~   73 (381)
T TIGR03197         1 TAYSLAR--RGWQVTLYEQDEAPAQGASGNPQGALYPLLS--ADD-NPLSRFFLAAFLYARRFYRQLAE--AGFPFDHEW   73 (381)
T ss_pred             ChHHHHh--CCCeeEEEeCCCcccccCCCChhheeeeecC--CCC-CHHHHHHHHHHHHHHHHHHHHHh--cCCCccccc
Confidence            6999999  89999999996 5889999999999998432  111 12333432    34455555542  2332  3 4


Q ss_pred             cccc-cccchhhhhhc-ccccccch---hccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceecccccCCCCCCCCC
Q psy16975        337 NGYN-LAKSEKQCAEN-HYLKPVLP---VYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGER  409 (728)
Q Consensus       337 ~G~~-~a~~~~~~~~~-~~~~~~g~---~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~  409 (728)
                      .|++ ++.++++.+.. ...+..+.   ..++++.+|+.++++. ....|++++ ++++||..++.+|++.+.  + |  
T Consensus        74 ~G~L~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~--~-G--  148 (381)
T TIGR03197        74 CGVLQLAYDEKEAERLQKLLEQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAG--I-R--  148 (381)
T ss_pred             CceEEecCChHHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccC--C-C--
Confidence            5654 45555443221 11222222   2568999999887764 244677777 599999999999999998  8 8  


Q ss_pred             CceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccc-cccccccccccEEEcccccccchhhhhhcccccc
Q psy16975        410 PSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH-YAGLLSENCGVQVINGYNLAKSEKQCAENHYLKP  487 (728)
Q Consensus       410 ~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~-ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lp  487 (728)
                           ++|+++++ ++++..++.           +.+.+.  .+. ..++.||+|+     |.   |+..|....  .+|
T Consensus       149 -----~~i~~~~~V~~i~~~~~~-----------~~v~t~--~g~~~~a~~vV~a~-----G~---~~~~l~~~~--~~p  200 (381)
T TIGR03197       149 -----LTLHFNTEITSLERDGEG-----------WQLLDA--NGEVIAASVVVLAN-----GA---QAGQLAQTA--HLP  200 (381)
T ss_pred             -----cEEEeCCEEEEEEEcCCe-----------EEEEeC--CCCEEEcCEEEEcC-----Cc---ccccccccc--cCC
Confidence                 99999988 455432222           123333  232 3344999999     99   999887664  478


Q ss_pred             cchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccccccCcccccc
Q psy16975        488 VLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGV  567 (728)
Q Consensus       488 v~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~e~~~~d~~~  567 (728)
                      +.|+|||++.++.                     ....+.+.      .+.....|++|+.+|++++|++.+..+.+..+
T Consensus       201 i~p~rg~~~~~~~---------------------~~~~~~~~------~~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~  253 (381)
T TIGR03197       201 LRPVRGQVSHLPA---------------------TEALSALK------TVLCYDGYLTPANNGEHCIGASYDRNDDDLAL  253 (381)
T ss_pred             ccccccceeeccC---------------------CCcccccC------ceEeCCceecccCCCceEeecccCCCCCCCCc
Confidence            9999999752211                     00001111      11123469999999999999998887777777


Q ss_pred             cccchhhhhhcccccccccc-----cccceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecc
Q psy16975        568 DRFDSRAILNRTAAVRPEIL-----AAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKA  640 (728)
Q Consensus       568 ~~~~~~~ll~~~~~l~P~L~-----~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~  640 (728)
                      +.+..+.+++++.+++|.++     +.++++.|+|+||+|+|  +.|...                              
T Consensus       254 ~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~t~D~~Piig~~------------------------------  303 (381)
T TIGR03197       254 READHAENLERLAECLPALAWASEVDISALQGRVGVRCASPDHLPLVGAV------------------------------  303 (381)
T ss_pred             CHHHHHHHHHHHHHhCcccchhhccCccccCceEEEeccCCCcCccCCCC------------------------------
Confidence            88888999999999999997     78999999999999999  322210                              


Q ss_pred             cCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCc-eEEEEeecccCccccccCCCCceeeeeeeecc
Q psy16975        641 AGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQ-TIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS  718 (728)
Q Consensus       641 ~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~-~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~  718 (728)
                                ....|...+|+.|=|-+          ..+.+-+.+ .-.+|.+.||+|.|++++|++|+.++++|.+.
T Consensus       304 ----------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~~  362 (381)
T TIGR03197       304 ----------PDFEAIKEAYAELAKDK----------NRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQICGE  362 (381)
T ss_pred             ----------CCHHHHHHHHHHhcccc----------cccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHhCC
Confidence                      00011111233331111          111111111 01388999999999999999999999999653

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.88  E-value=4.5e-24  Score=244.66  Aligned_cols=304  Identities=13%  Similarity=0.078  Sum_probs=181.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      |+..+||+|||||++|+++|++|++  +|++|+|||++..++++|+++.++++........   ...++.+++.+....+
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~---~~~~l~~e~l~er~~l   77 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH---YEFRLVREALAEREVL   77 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccccccchHHHhhh---ccHHHHHHHHHHHHHH
Confidence            4567999999999999999999999  9999999999999999999999988874311111   1233444444322222


Q ss_pred             cc--cc----cccEE--Ecccccccc-hhhhhhccccc--ccchhccccCHHHH---hhcCCCCcceeEeEEeeeecCcc
Q psy16975        327 LS--EN----CGVQV--INGYNLAKS-EKQCAENHYLK--PVLPVYKRMSEEEL---AEIGPGDWKYGIYMSTLVIPNRI  392 (728)
Q Consensus       327 ~~--~~----~Gv~~--~~G~~~a~~-~~~~~~~~~~~--~~g~~~~~L~~~el---~~~~P~~~~~G~~~~~g~idp~~  392 (728)
                      .+  +.    ..+.+  ..++..... ...+.....+.  ......+.+..++.   ..+.| +...|+.++++++||..
T Consensus        78 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~-~l~g~~~~~dg~vd~~r  156 (508)
T PRK12266         78 LRMAPHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKP-EITRGFEYSDCWVDDAR  156 (508)
T ss_pred             HHhCCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcch-hhcEEEEEcCcccCHHH
Confidence            11  01    11101  000000000 00000000000  00011111111110   11112 34567777789999999


Q ss_pred             ceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccc
Q psy16975        393 FLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYN  471 (728)
Q Consensus       393 ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~  471 (728)
                      ++.+++..+.  ++|       ++++++++ +++....+.+...+.+      ..+. ....+.++.||||+     |+ 
T Consensus       157 l~~~l~~~A~--~~G-------a~i~~~~~V~~i~~~~~~~~v~~~~------~~~g-~~~~i~a~~VVnAa-----G~-  214 (508)
T PRK12266        157 LVVLNARDAA--ERG-------AEILTRTRVVSARRENGLWHVTLED------TATG-KRYTVRARALVNAA-----GP-  214 (508)
T ss_pred             HHHHHHHHHH--HcC-------CEEEcCcEEEEEEEeCCEEEEEEEE------cCCC-CEEEEEcCEEEECC-----Cc-
Confidence            9999999988  888       99999998 4554332222100110      0000 01234445999999     99 


Q ss_pred             cccchhhhhhc-cc--ccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecC
Q psy16975        472 LAKSEKQCAEN-HY--LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSY  548 (728)
Q Consensus       472 ~~~S~~L~~~~-gi--~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~  548 (728)
                        |+.++.... +.  ..++.|.+|+.++                     ++.....+...-  ++ .-.....|++|..
T Consensus       215 --wa~~l~~~~~g~~~~~~i~p~kG~~lv---------------------l~~~~~~~~~~~--~~-~~dgr~v~~~P~~  268 (508)
T PRK12266        215 --WVKQFLDDGLGLPSPYGIRLVKGSHIV---------------------VPRLFDHDQAYI--LQ-NPDGRIVFAIPYE  268 (508)
T ss_pred             --cHHHHHhhccCCCCCcceeeeeeEEEE---------------------ECCcCCCCcEEE--Ee-CCCCCEEEEEEeC
Confidence              998887642 32  3478899998542                     100000000000  00 0012346789998


Q ss_pred             CceEEecccccc---Ccccccccccchhhhhhccccccc-ccccccceeeeeecccccce
Q psy16975        549 GGLVTLGGTQDY---GNARLGVDRFDSRAILNRTAAVRP-EILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       549 dG~vviGgt~e~---~~~d~~~~~~~~~~ll~~~~~l~P-~L~~~~I~~~waGlRP~tpd  604 (728)
                      +|.+++|+|.++   ...+..++.+.++.|++.+.+++| .|...+|++.|+|+||.++|
T Consensus       269 ~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d  328 (508)
T PRK12266        269 DDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDD  328 (508)
T ss_pred             CCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCC
Confidence            888999998754   234667888999999999999996 89999999999999999987

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.88  E-value=2e-23  Score=244.29  Aligned_cols=305  Identities=14%  Similarity=0.076  Sum_probs=189.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCC-C------CCCchhhhhhhhhccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNF-M------GPDLETTKEWIRYSYD  321 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l-~------~~~~~~~~~~~~~s~~  321 (728)
                      ..+||+||||||+|+++||+|++  +|++|+|||++.+++++|+++.++++..... .      +.....+...+...++
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er~  147 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEERK  147 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHHH
Confidence            45899999999999999999999  9999999999999999999998887663100 0      0000011111211111


Q ss_pred             cc----ccccccccccEEEcccccccchh---hhhhcccc--cccchhccccCHHHHhhcCCC---C-----cceeEeEE
Q psy16975        322 HY----AGLLSENCGVQVINGYNLAKSEK---QCAENHYL--KPVLPVYKRMSEEELAEIGPG---D-----WKYGIYMS  384 (728)
Q Consensus       322 ~~----~~l~~~~~Gv~~~~G~~~a~~~~---~~~~~~~~--~~~g~~~~~L~~~el~~~~P~---~-----~~~G~~~~  384 (728)
                      .+    ..+.+ ..+..... +.......   .+.....+  .......++|+++|+.+++|.   .     ..+++.+.
T Consensus       148 ~l~~~ap~l~~-~l~~~~p~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~  225 (627)
T PLN02464        148 QLIENAPHLCH-ALPIMTPC-YDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYY  225 (627)
T ss_pred             HHHhhChhhcc-ccceeeec-cchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEec
Confidence            11    11111 11111110 00000000   00001111  111224688999999999997   2     34456556


Q ss_pred             eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEe--cccccc-ccCCcchhHHHHhhhcccccccccc
Q psy16975        385 TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVR--GPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSE  460 (728)
Q Consensus       385 ~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~--g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VV  460 (728)
                      ++++||..++.+|++.+.  ++|       ++|+++++ +++....  +.+..- +.+      ..+. ....+.++.||
T Consensus       226 Dg~vdp~rl~~al~~~A~--~~G-------a~i~~~~~V~~l~~~~~~g~v~gV~v~d------~~tg-~~~~i~a~~VV  289 (627)
T PLN02464        226 DGQMNDSRLNVALACTAA--LAG-------AAVLNYAEVVSLIKDESTGRIVGARVRD------NLTG-KEFDVYAKVVV  289 (627)
T ss_pred             CcEEcHHHHHHHHHHHHH--hCC-------cEEEeccEEEEEEEecCCCcEEEEEEEE------CCCC-cEEEEEeCEEE
Confidence            799999999999999999  888       99999988 4554331  222110 100      0011 01123444999


Q ss_pred             ccccEEEcccccccchhhhhhcc-ccc-ccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH
Q psy16975        461 NCGVQVINGYNLAKSEKQCAENH-YLK-PVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR  538 (728)
Q Consensus       461 nAa~~viaG~~~~~S~~L~~~~g-i~l-pv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~  538 (728)
                      ||+     |+   |+.++..+.+ ... ++.|.||+.+.                     ++ ....|......++....
T Consensus       290 nAa-----Ga---ws~~l~~~~g~~~~~~I~p~kG~hlv---------------------l~-~~~~~~~~~~i~~~~~d  339 (627)
T PLN02464        290 NAA-----GP---FCDEVRKMADGKAKPMICPSSGVHIV---------------------LP-DYYSPEGMGLIVPKTKD  339 (627)
T ss_pred             ECC-----CH---hHHHHHHhccCcCCCceEeeeeEEEe---------------------cc-cccCCCCceEEecCCCC
Confidence            999     99   9999987664 122 48899997432                     10 00001000000000112


Q ss_pred             hhceeeeecCCceEEecccccc--Ccccccccccchhhhhhccccccc-ccccccceeeeeecccccce
Q psy16975        539 LAGAYIIPSYGGLVTLGGTQDY--GNARLGVDRFDSRAILNRTAAVRP-EILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       539 ~~~~YiiP~~dG~vviGgt~e~--~~~d~~~~~~~~~~ll~~~~~l~P-~L~~~~I~~~waGlRP~tpd  604 (728)
                      ....|++|. +|.+++|+|.+.  .+.+..+++++++.|++.+.++|| .|...+|++.|+|+||..+|
T Consensus       340 gr~~~~~P~-~g~~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl~~d  407 (627)
T PLN02464        340 GRVVFMLPW-LGRTVAGTTDSKTPITMLPEPHEDEIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVD  407 (627)
T ss_pred             CCEEEEEec-CCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCChhhEEEEEEeEEeeccC
Confidence            345899999 778999998876  345667778999999999999999 79999999999999999987

>KOG2853|consensus

Probab=99.87  E-value=5.2e-23  Score=214.43  Aligned_cols=350  Identities=18%  Similarity=0.155  Sum_probs=218.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhC--CCCcEEEeecccccccCC-CCc-cccccCCCCCCCCCchhhhhhhhhccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMDTTS-DGA-AGLFEPSPNFMGPDLETTKEWIRYSYDHY  323 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~~g~gAS-~~a-gGii~p~~~l~~~~~~~~~~~~~~s~~~~  323 (728)
                      +.++||+|||||.+|+|+||+|.++.  .|++|+|+|++.....+| ..+ ||+...+   +-   ++..+++..+.+++
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF---Sl---pEnIqmSLF~a~Fl  157 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF---SL---PENIQMSLFTAEFL  157 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec---cc---chhhhhhhHHHHHH
Confidence            35789999999999999999999843  479999999987654444 344 6666653   22   25666776666666


Q ss_pred             ccccc-------cccccEE-Ecccccccchhhhhhc----ccccccchhccccCHHHHhhcCCCCcceeEeE-----E-e
Q psy16975        324 AGLLS-------ENCGVQV-INGYNLAKSEKQCAEN----HYLKPVLPVYKRMSEEELAEIGPGDWKYGIYM-----S-T  385 (728)
Q Consensus       324 ~~l~~-------~~~Gv~~-~~G~~~a~~~~~~~~~----~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~-----~-~  385 (728)
                      +..-+       ++.++.+ .+||++..++++.+..    +...+.|...+.|+++++.+++|+....|+.+     . .
T Consensus       158 r~a~ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~E  237 (509)
T KOG2853|consen  158 RNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKE  237 (509)
T ss_pred             HHHHHhhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccc
Confidence            54332       2334444 6798776555554321    22356788999999999999999832333332     2 5


Q ss_pred             eeecCccceecccccCCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCc-------chhH--HHHhh-hccccc
Q psy16975        386 LVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGP-------RTCA--MQRAM-QHDHYA  455 (728)
Q Consensus       386 g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~-------~v~~--v~t~~-~~g~ad  455 (728)
                      ||+||+.++..+.+.+.  .+|       |.+....-+++++..-+-+..+.+++       ++.+  |+... .....+
T Consensus       238 Gwfdpw~LLs~~rrk~~--~lG-------v~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk  308 (509)
T KOG2853|consen  238 GWFDPWALLSGIRRKAI--TLG-------VQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVK  308 (509)
T ss_pred             cccCHHHHHHHHHHHhh--hhc-------ceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCcee
Confidence            99999999999999998  777       55544332333333222111111221       1101  11000 011222


Q ss_pred             cccccccccEEEcccccccchhhhhhcc---------cccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccc
Q psy16975        456 GLLSENCGVQVINGYNLAKSEKQCAENH---------YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLP  526 (728)
Q Consensus       456 a~~VVnAa~~viaG~~~~~S~~L~~~~g---------i~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P  526 (728)
                      +..+|||+     |+   ||.+++..++         ..+|+.|.|.++.                     ++. ....|
T Consensus       309 ~al~V~aA-----Ga---~s~QvArlAgIG~g~g~L~vplPiepRKRyvy---------------------vi~-~~~~P  358 (509)
T KOG2853|consen  309 FALCVNAA-----GA---WSGQVARLAGIGKGPGLLAVPLPIEPRKRYVY---------------------VIF-APDVP  358 (509)
T ss_pred             EEEEEecc-----Cc---cHHHHHHHhccCCCCceeeecccCCccceeEE---------------------EEe-CCCCC
Confidence            23788888     99   9888776544         3467777777753                     221 11234


Q ss_pred             hhcccchHHHHHhhceeeeecC-CceEEecccccc----Ccccccccccc-hhhhhhcccccccccccccceeeeeeccc
Q psy16975        527 WCMQKNFASLVRLAGAYIIPSY-GGLVTLGGTQDY----GNARLGVDRFD-SRAILNRTAAVRPEILAAPVEKVWVGLRP  600 (728)
Q Consensus       527 ~l~~~~~~~~i~~~~~YiiP~~-dG~vviGgt~e~----~~~d~~~~~~~-~~~ll~~~~~l~P~L~~~~I~~~waGlRP  600 (728)
                      .+..   |-+++..+.|++... .+..++|-+...    +..+..+|.+. .+.++..+...+|.+..++|...|+|++.
T Consensus       359 Gl~~---Pl~iDpsG~f~Rrdglg~nfl~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD  435 (509)
T KOG2853|consen  359 GLDT---PLTIDPSGVFFRRDGLGGNFLCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRVPAFETAKVQSAWAGYYD  435 (509)
T ss_pred             CCCC---ceeECCCccEEEecCCCCceecccCCccccCCCccccccChHHHHhhhhHHHHhcccccceeeeeehhccccc
Confidence            3332   113334577887765 445666655221    22334555554 56889999999999999999999999876


Q ss_pred             cc-ceeeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcce
Q psy16975        601 YR-HHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMH  679 (728)
Q Consensus       601 ~t-pd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~  679 (728)
                      .- -|                                   .+||                         +|.-       
T Consensus       436 ~NtfD-----------------------------------~ngV-------------------------iG~H-------  448 (509)
T KOG2853|consen  436 HNTFD-----------------------------------DNGV-------------------------IGEH-------  448 (509)
T ss_pred             ccccc-----------------------------------cCCc-------------------------ccCC-------
Confidence            52 12                                   0000                         1111       


Q ss_pred             EEeecCceEEEEeecccCccccccCCCCceeeeeeeec
Q psy16975        680 VIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ  717 (728)
Q Consensus       680 ~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~  717 (728)
                        |.   ...++-+.|++|+|++-|++.++.+++||-+
T Consensus       449 --P~---y~Nly~atGFsghGvqqs~avgRAiaElIld  481 (509)
T KOG2853|consen  449 --PL---YTNLYMATGFSGHGVQQSPAVGRAIAELILD  481 (509)
T ss_pred             --cc---eeeeeeeecccccchhcchHHHHHHHHHHhc
Confidence              11   1347788999999999999999999998754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.87  E-value=9.7e-23  Score=225.30  Aligned_cols=340  Identities=16%  Similarity=0.143  Sum_probs=232.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLL  327 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~  327 (728)
                      +.+||+||||||+|+++|++|++..++++|+||||.. ++..+|++|+|.++...+ +.+ .+..++++......+.++.
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~-y~p-~slka~l~~~g~~~~~~~~   79 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLY-YTP-GSLKAKLCVAGNINEFAIC   79 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceecccc-CCC-cchhhHHHHHHHHHHHHHH
Confidence            5789999999999999999999955559999999964 788899999999998642 222 3577888888888777776


Q ss_pred             ccccccEE-Eccc-ccccchhhhhhc----ccccccch-hccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceec
Q psy16975        328 SENCGVQV-INGY-NLAKSEKQCAEN----HYLKPVLP-VYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPW  396 (728)
Q Consensus       328 ~~~~Gv~~-~~G~-~~a~~~~~~~~~----~~~~~~g~-~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~  396 (728)
                      + +.++.+ ..|. .++.++++.+..    +.....+. +.+.+|.+++++++|.   +...|++.+ ++.+|+..++.+
T Consensus        80 k-q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~  158 (429)
T COG0579          80 K-QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA  158 (429)
T ss_pred             H-HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence            4 677776 4464 556666665422    22333444 4899999999999997   244566667 599999999999


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccc--cccccccccccEEEcccccc
Q psy16975        397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH--YAGLLSENCGVQVINGYNLA  473 (728)
Q Consensus       397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~--ada~~VVnAa~~viaG~~~~  473 (728)
                      |++.++  ++|       ++++.|++ ++++...+.+.          .+.+.  .+.  +.|+.||||+     |.   
T Consensus       159 l~e~a~--~~g-------~~i~ln~eV~~i~~~~dg~~----------~~~~~--~g~~~~~ak~Vin~A-----Gl---  209 (429)
T COG0579         159 LAEEAQ--ANG-------VELRLNTEVTGIEKQSDGVF----------VLNTS--NGEETLEAKFVINAA-----GL---  209 (429)
T ss_pred             HHHHHH--HcC-------CEEEecCeeeEEEEeCCceE----------EEEec--CCcEEEEeeEEEECC-----ch---
Confidence            999999  888       99999999 56665543111          12222  222  4566999999     99   


Q ss_pred             cchhhhhhcccc--cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCce
Q psy16975        474 KSEKQCAENHYL--KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGL  551 (728)
Q Consensus       474 ~S~~L~~~~gi~--lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~  551 (728)
                      .|..|+.+.++.  ..+.|++|+.+....+.        ..-+.+++.  ..+.|...         ..+.++.|..||.
T Consensus       210 ~Ad~la~~~g~~~~~~~~P~~G~y~~~~~~~--------~~~~~~~Iy--~~p~~~~p---------~~gV~~~~~idG~  270 (429)
T COG0579         210 YADPLAQMAGIPEDFKIFPVRGEYLVLDNEV--------KALLRHKIY--PVPNPGLP---------GLGVHHTPTIDGS  270 (429)
T ss_pred             hHHHHHHHhCCCcccccCccceEEEEEcccc--------cccccceee--cCCCCCCC---------CCcceeecccCCe
Confidence            777787776642  35788888854222100        000111111  00111000         2356777888999


Q ss_pred             EEeccccccC----cccccccccchhhhhhcccccccccc-cccceeeeeecccccceeeee--eccccccceeeeeeee
Q psy16975        552 VTLGGTQDYG----NARLGVDRFDSRAILNRTAAVRPEIL-AAPVEKVWVGLRPYRHHVRVE--RDLTGAAQYLTWYPVF  624 (728)
Q Consensus       552 vviGgt~e~~----~~d~~~~~~~~~~ll~~~~~l~P~L~-~~~I~~~waGlRP~tpd~Rie--~e~~~~~~~~~~l~~~  624 (728)
                      +++|.+....    ..+...+.+..+.+.......+|.+. .-..+..++|.||+..+.+..  ...+....-.+|  ++
T Consensus       271 ~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~~--~~  348 (429)
T COG0579         271 LLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDEDW--FI  348 (429)
T ss_pred             EEECCCcccchhhhccccccccchhhhHHHhhhhhcccccccccchhhhheeccccccccccccceecccccCCCC--ce
Confidence            9999887664    23356778888889999999999998 667888999999963221110  000111111234  56


Q ss_pred             EEeceeEEEEEeeeccc
Q psy16975        625 KVYGITSVLFVHRFKAA  641 (728)
Q Consensus       625 ~~~G~~~~g~~~~~~~~  641 (728)
                      .++|+.++|+++.-..+
T Consensus       349 ~~aGiRsq~lt~~~a~~  365 (429)
T COG0579         349 NVAGIRSQGLTADPAIA  365 (429)
T ss_pred             eeeeEEccccccChhHh
Confidence            89999999999887654

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=99.85  E-value=1.5e-22  Score=232.59  Aligned_cols=282  Identities=11%  Similarity=0.124  Sum_probs=194.6

Q ss_pred             HHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccccccccEEEcc-cccccc
Q psy16975        266 ALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVING-YNLAKS  344 (728)
Q Consensus       266 A~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~~~~Gv~~~~G-~~~a~~  344 (728)
                      |++|++  +|.+|+||||+.++++||++|+|+++........ .....+.+....+.|.++.. .. + ...| +.++.+
T Consensus         1 ArdLa~--rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~-~~~~a~~~~~~~~~l~~~a~-~~-~-~~~g~L~va~~   74 (516)
T TIGR03377         1 MRDLAL--RGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVT-DQESARECIEENRILKRIAR-HC-V-EDTGGLFITLP   74 (516)
T ss_pred             ChhHHH--CCCCEEEEeCCCcccccccccccCcCcchhhhcc-CHHHHHHHHHHHHHHHHhCh-Hh-c-cCCCceEEecC
Confidence            789999  9999999999999999999999999875321111 23455666666666666652 21 1 2334 344433


Q ss_pred             hhhhhh----cccccccchhccccCHHHHhhcCCC---CcceeEeEEeeeecCccceecccccCCCCCCCCCCceeeEEE
Q psy16975        345 EKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVEL  417 (728)
Q Consensus       345 ~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I  417 (728)
                      +++...    .......+.+.++|+++|+.+++|.   +..+|++++++++||..++.+|++.+.  ++|       ++|
T Consensus        75 ~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~~~ga~~~~dg~vdp~~l~~al~~~A~--~~G-------a~i  145 (516)
T TIGR03377        75 EDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDAQ--EHG-------ARI  145 (516)
T ss_pred             cccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChhheEEEEeCCcEECHHHHHHHHHHHHH--HcC-------CEE
Confidence            333211    1223445677899999999999996   345678888899999999999999998  888       999


Q ss_pred             EEeeC-ceeEEEecccccc-ccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhcccc
Q psy16975        418 YHYNR-DSLTVVRGPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRM  495 (728)
Q Consensus       418 ~e~t~-~~V~~~~g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl  495 (728)
                      +++++ +++...++.+..- +.+      ..+. ....+.++.|||||     |+   |+..+....+...++.|.||++
T Consensus       146 ~~~t~V~~i~~~~~~v~gv~v~~------~~~g-~~~~i~a~~VVnAa-----G~---wa~~l~~~~g~~~~i~p~kG~~  210 (516)
T TIGR03377       146 FTYTKVTGLIREGGRVTGVKVED------HKTG-EEERIEAQVVINAA-----GI---WAGRIAEYAGLDIRMFPAKGAL  210 (516)
T ss_pred             EcCcEEEEEEEECCEEEEEEEEE------cCCC-cEEEEEcCEEEECC-----Cc---chHHHHHhcCCCCceecceEEE
Confidence            99999 5565443332110 110      0000 01234455999999     99   9999988777678899999996


Q ss_pred             CHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHH-HhhceeeeecCCceEEeccccccC--cccccccccch
Q psy16975        496 SEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLV-RLAGAYIIPSYGGLVTLGGTQDYG--NARLGVDRFDS  572 (728)
Q Consensus       496 ~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i-~~~~~YiiP~~dG~vviGgt~e~~--~~d~~~~~~~~  572 (728)
                      +                     +++.......+..     +. .....|++|. ++.+++|+|.+..  .++..++.+.+
T Consensus       211 l---------------------v~~~~~~~~~~~~-----~~~~~~g~~~~P~-~~~~liGtT~~~~~~~~~~~~~~~~v  263 (516)
T TIGR03377       211 L---------------------IMNHRINNTVINR-----CRKPSDADILVPG-DTISIIGTTSERIDDPDDLPVTQEEV  263 (516)
T ss_pred             E---------------------EECCccccccccc-----ccCCCCCcEEEEC-CCeEEEecCCCCCCCCCCCCCCHHHH
Confidence            4                     2211000000000     11 1234688896 5678999998762  34567888899


Q ss_pred             hhhhhcccccccccccccceeeeeecccccce
Q psy16975        573 RAILNRTAAVRPEILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       573 ~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd  604 (728)
                      +.+++.+.+++|.|...+|++.|+|+||...+
T Consensus       264 ~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~  295 (516)
T TIGR03377       264 DVLLREGAKLAPMLAQTRILRAFAGVRPLVAV  295 (516)
T ss_pred             HHHHHHHHHhCcccccCCEEEEEeecccccCC
Confidence            99999999999999999999999999998754

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.81  E-value=1.5e-20  Score=211.78  Aligned_cols=303  Identities=14%  Similarity=0.125  Sum_probs=196.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcc---ccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSY---DHY  323 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~---~~~  323 (728)
                      .+.++||+||||||.|+-+|+.++.  +|++|+++|++..++|||+++.++++........   ....+.+++.   +.+
T Consensus         9 ~~~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~---~e~~lvrEal~Er~vL   83 (532)
T COG0578           9 RMEEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQ---YEFSLVREALAEREVL   83 (532)
T ss_pred             cccCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcccCccccCccchhhhhhh---cchHHHHHHHHHHHHH
Confidence            3478999999999999999999999  9999999999999999999999999885321111   1112222222   223


Q ss_pred             ccccccccccEEEcccccccc--hhhh--h----hc---ccccccchhccccCHHHHhhcCCC----CcceeEeEEeeee
Q psy16975        324 AGLLSENCGVQVINGYNLAKS--EKQC--A----EN---HYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMSTLVI  388 (728)
Q Consensus       324 ~~l~~~~~Gv~~~~G~~~a~~--~~~~--~----~~---~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~~g~i  388 (728)
                      .+.+. .+ +.-..+++...+  .+..  .    ..   ...++..+..+.++.++...++|.    ...+|+.|+++++
T Consensus        84 ~~~AP-H~-v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v  161 (532)
T COG0578          84 LRIAP-HL-VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV  161 (532)
T ss_pred             HHhCc-cc-cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee
Confidence            33321 11 111112211111  1111  0    01   111233456778888888888986    2345899999999


Q ss_pred             cCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEE
Q psy16975        389 PNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVI  467 (728)
Q Consensus       389 dp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~vi  467 (728)
                      |+.+++...++.+.  .+|       ++|.++++ +++....+ + ..++-.    ...+. ......++.|||||    
T Consensus       162 ddaRLv~~~a~~A~--~~G-------a~il~~~~v~~~~re~~-v-~gV~~~----D~~tg-~~~~ira~~VVNAa----  221 (532)
T COG0578         162 DDARLVAANARDAA--EHG-------AEILTYTRVESLRREGG-V-WGVEVE----DRETG-ETYEIRARAVVNAA----  221 (532)
T ss_pred             chHHHHHHHHHHHH--hcc-------cchhhcceeeeeeecCC-E-EEEEEE----ecCCC-cEEEEEcCEEEECC----
Confidence            99999999999998  888       99999999 45554443 1 111100    00110 01134444999999    


Q ss_pred             cccccccchhhhhhcccc----cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhcee
Q psy16975        468 NGYNLAKSEKQCAENHYL----KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY  543 (728)
Q Consensus       468 aG~~~~~S~~L~~~~gi~----lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~Y  543 (728)
                       |.   |+.+++...+..    ..+.|.+|..+                     +++.  ..|......+++--.....+
T Consensus       222 -Gp---W~d~i~~~~~~~~~~~~~vr~skGsHl---------------------Vv~~--~~~~~~a~~~~~~~d~r~~f  274 (532)
T COG0578         222 -GP---WVDEILEMAGLEQSPHIGVRPSKGSHL---------------------VVDK--KFPINQAVINRCRKDGRIVF  274 (532)
T ss_pred             -Cc---cHHHHHHhhcccCCCCccceeccceEE---------------------Eecc--cCCCCceEEeecCCCCceEE
Confidence             99   999988776432    25888888743                     3311  11211110000000134567


Q ss_pred             eeecCCceEEeccccccC---cccccccccchhhhhhccc-ccccccccccceeeeeecccccce
Q psy16975        544 IIPSYGGLVTLGGTQDYG---NARLGVDRFDSRAILNRTA-AVRPEILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       544 iiP~~dG~vviGgt~e~~---~~d~~~~~~~~~~ll~~~~-~l~P~L~~~~I~~~waGlRP~tpd  604 (728)
                      ++|..+.. ++|.|...-   ..+..+++++++.|++.+. .+-|.+...+|+..|+|+||.-.|
T Consensus       275 ~iP~~~~~-liGTTD~~~~~~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~  338 (532)
T COG0578         275 AIPYEGKT-LIGTTDTDYDGDPEDPRITEEEIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDD  338 (532)
T ss_pred             EecCCCCE-EeeccccccCCCcccCCCCHHHHHHHHHHHHhhhhccCChhheeeeeeeeeeccCC
Confidence            88887774 999997662   3557789999999999999 667788999999999999999774

>KOG2820|consensus

Probab=99.80  E-value=2e-20  Score=195.95  Aligned_cols=339  Identities=17%  Similarity=0.144  Sum_probs=222.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhcccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA  324 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~  324 (728)
                      |.+..||+||||||.||||||+|++  +|.++.+||+..++.  |+|....-++++.+     ....+.++..++++.|.
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSShg~sRIiR~~Y-----~e~~Y~~m~~ea~e~W~   76 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSSHGISRIIRPAY-----AEDKYMSMVLEAYEKWR   76 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcccCcceeechhh-----hhHHHHHHHHHHHHHHH
Confidence            5567899999999999999999999  899999999988764  67777778888843     23468889999999999


Q ss_pred             cccccccccEEEccc--ccccchh--hhh-hcccccccchhccccCHHHHhhcCCC-----CcceeEeEE-eeeecCccc
Q psy16975        325 GLLSENCGVQVINGY--NLAKSEK--QCA-ENHYLKPVLPVYKRMSEEELAEIGPG-----DWKYGIYMS-TLVIPNRIF  393 (728)
Q Consensus       325 ~l~~~~~Gv~~~~G~--~~a~~~~--~~~-~~~~~~~~g~~~~~L~~~el~~~~P~-----~~~~G~~~~-~g~idp~~l  393 (728)
                      ++.. +.|..+..|.  +...+.+  ++. ....++..+...+.++.+|+++++|.     +--.|+.-+ +|++++.+.
T Consensus        77 ~~~~-~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~ks  155 (399)
T KOG2820|consen   77 NLPE-ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKS  155 (399)
T ss_pred             hChh-hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHH
Confidence            9874 7777765543  3333332  121 22444566778899999999999994     112344444 699999999


Q ss_pred             eecccccCCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHHHhhhccc-cccccccccccEEEccccc
Q psy16975        394 LPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH-YAGLLSENCGVQVINGYNL  472 (728)
Q Consensus       394 l~~L~~~a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~-ada~~VVnAa~~viaG~~~  472 (728)
                      +++|...++  ..|       +.++.+..+       .+...+.+++..+.|.|.  .+. +.++.+|+++     |+  
T Consensus       156 lk~~~~~~~--~~G-------~i~~dg~~v-------~~~~~~~e~~~~v~V~Tt--~gs~Y~akkiI~t~-----Ga--  210 (399)
T KOG2820|consen  156 LKALQDKAR--ELG-------VIFRDGEKV-------KFIKFVDEEGNHVSVQTT--DGSIYHAKKIIFTV-----GA--  210 (399)
T ss_pred             HHHHHHHHH--HcC-------eEEecCcce-------eeEeeccCCCceeEEEec--cCCeeecceEEEEe-----cH--
Confidence            999999999  888       666665551       111113344445567766  443 5555999999     99  


Q ss_pred             ccchhhhhh-cccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecC-Cc
Q psy16975        473 AKSEKQCAE-NHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSY-GG  550 (728)
Q Consensus       473 ~~S~~L~~~-~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~-dG  550 (728)
                       |...|++. +++..||.|++-.+.  +        |+      ++     ...|.  .     +..+...|++|.. +.
T Consensus       211 -Wi~klL~~~~~~~~Pv~~i~ltvc--y--------wk------~~-----~~~~~--~-----l~~d~~f~~F~~~~~~  261 (399)
T KOG2820|consen  211 -WINKLLPTSLAIGFPVAPIQLTVC--Y--------WK------TK-----KNMPV--Y-----LFDDDCFYAFPPYPDT  261 (399)
T ss_pred             -HHHhhcCcccccCCccceeEeehh--h--------he------ee-----cCCce--e-----ecCCCCceeccCCCCc
Confidence             99999874 455578888765432  1        21      11     01111  0     1113334444332 22


Q ss_pred             e-EEecccc-c----------------c---Ccccccccccchhhhhhcccccccccccccceeeeeecccccce--eee
Q psy16975        551 L-VTLGGTQ-D----------------Y---GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRV  607 (728)
Q Consensus       551 ~-vviGgt~-e----------------~---~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Ri  607 (728)
                      . +..|-.. +                +   +.....+....++.+..-..++.|.+.+-...+.-.+++-.|||  +.|
T Consensus       262 ~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~~~p~~t~~C~YT~TpD~~Fvi  341 (399)
T KOG2820|consen  262 KLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDLDDRSPINTKMCMYTDTPDANFVI  341 (399)
T ss_pred             ceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccccCCCcceeeEEEeeCCCCcCeee
Confidence            1 2222110 0                0   11111223334555556667789999988888889999999999  433


Q ss_pred             eeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCce
Q psy16975        608 ERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQT  687 (728)
Q Consensus       608 e~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~  687 (728)
                      ...                                                                       |   |-
T Consensus       342 D~~-----------------------------------------------------------------------P---~~  347 (399)
T KOG2820|consen  342 DKH-----------------------------------------------------------------------P---QY  347 (399)
T ss_pred             ecC-----------------------------------------------------------------------C---Cc
Confidence            220                                                                       1   11


Q ss_pred             EEEEeecccCccccccCCCCceeeeeeeeccccc
Q psy16975        688 IRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKA  721 (728)
Q Consensus       688 ~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~~~  721 (728)
                      -.|+-.-|.+|+||-++|++++.+++++-+.+.+
T Consensus       348 ~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~~e  381 (399)
T KOG2820|consen  348 DNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDLSE  381 (399)
T ss_pred             ccEEEecCCCCcceeecchHHHHHHHHhhhcccc
Confidence            2466677889999999999999999988776653

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.73  E-value=2.1e-18  Score=196.51  Aligned_cols=222  Identities=11%  Similarity=0.080  Sum_probs=145.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCC--CCccccccCCCCCCCCCchhhhhhhhhccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTS--DGAAGLFEPSPNFMGPDLETTKEWIRYSYDHY  323 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS--~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~  323 (728)
                      ....+||+||||||+|+++||+|++..++.+|+||||.. ++.++|  ..|+|.++... ......+..++++.++.+.+
T Consensus        42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~-~~~~y~~~kA~~~~~~~~~~  120 (497)
T PTZ00383         42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGD-IETNYTLEKARKVKRQADML  120 (497)
T ss_pred             cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCcccccee-ehhcCCHHHHHHHHHHHHHH
Confidence            445789999999999999999999943447999999974 455555  34555544321 11011223455555555555


Q ss_pred             ccccc---cccc--cEEEccc-ccccchhhhhh----cccccccchhccccCHHHHhhcCCCC-----------cceeEe
Q psy16975        324 AGLLS---ENCG--VQVINGY-NLAKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPGD-----------WKYGIY  382 (728)
Q Consensus       324 ~~l~~---~~~G--v~~~~G~-~~a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~~-----------~~~G~~  382 (728)
                      .+++.   ....  .....|. .++.++++.+.    .+.+++.+.++++++++|+++++|.-           ...|++
T Consensus       121 ~~~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~  200 (497)
T PTZ00383        121 RNYLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALY  200 (497)
T ss_pred             HHHHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccceEEEE
Confidence            55442   1111  1134564 44555555322    23344567789999999999999951           235677


Q ss_pred             EE-e-eeecCccceecccccCCCCC----CCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccc
Q psy16975        383 MS-T-LVIPNRIFLPWCMQKDGPSN----LGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYA  455 (728)
Q Consensus       383 ~~-~-g~idp~~ll~~L~~~a~~~~----~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ad  455 (728)
                      .+ + +.+||..++.+|++.++  +    +|.     .++|+++|+ ++++...          +.++.|.+.  .+...
T Consensus       201 ~p~~g~~Vd~~~L~~al~~~a~--~~~~~~G~-----~v~i~~~t~V~~I~~~~----------~~~~~V~T~--~G~i~  261 (497)
T PTZ00383        201 VPNELTTVDYQKLSESFVKHAR--RDALVPGK-----KISINLNTEVLNIERSN----------DSLYKIHTN--RGEIR  261 (497)
T ss_pred             eCCCCEEECHHHHHHHHHHHHH--hhhhhcCC-----CEEEEeCCEEEEEEecC----------CCeEEEEEC--CCEEE
Confidence            77 4 68999999999999998  7    662     267888888 4444321          222234444  34444


Q ss_pred             cccccccccEEEcccccccchhhhhhccc--ccccchhccccC
Q psy16975        456 GLLSENCGVQVINGYNLAKSEKQCAENHY--LKPVLPVYKRMS  496 (728)
Q Consensus       456 a~~VVnAa~~viaG~~~~~S~~L~~~~gi--~lpv~PvRGQl~  496 (728)
                      ++.||+|+     |.   |+..|+...++  ..++.|++|+.+
T Consensus       262 A~~VVvaA-----G~---~S~~La~~~Gi~~~~~i~Pv~G~~~  296 (497)
T PTZ00383        262 ARFVVVSA-----CG---YSLLFAQKMGYGLEYSCLPVAGSFY  296 (497)
T ss_pred             eCEEEECc-----Ch---hHHHHHHHhCCCCCCCEEecCceEE
Confidence            44999999     99   99999887664  567899999854

>KOG2852|consensus

Probab=99.73  E-value=2e-18  Score=177.27  Aligned_cols=341  Identities=17%  Similarity=0.167  Sum_probs=203.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhC---C-CCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRF---P-NCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDH  322 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~---~-G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~  322 (728)
                      +....+|+||||||+|++|||+|+++.   + .+.|+|+|+..++.+||+.++|++..   ++.+  .....++..+++.
T Consensus         7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~---wc~~--s~~~~La~lsfkL   81 (380)
T KOG2852|consen    7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAK---WCQP--SIIQPLATLSFKL   81 (380)
T ss_pred             cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHh---hhCC--cccchhhHHHHHH
Confidence            456679999999999999999999941   1 26899999999999999999999985   3333  1244556666666


Q ss_pred             cccccccccccE-----EEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceecc
Q psy16975        323 YAGLLSENCGVQ-----VINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWC  397 (728)
Q Consensus       323 ~~~l~~~~~Gv~-----~~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L  397 (728)
                      ++++.++.-|+.     ..+.+.+-.+-+.    ..-...+...+|+.++-...    ....|---.++++||+.||+.+
T Consensus        82 h~~LsdeydGvnnwgYRaltTws~ka~~en----~~p~k~pegldWi~~e~v~~----~ssiG~t~ttaqvhP~lFc~~i  153 (380)
T KOG2852|consen   82 HEELSDEYDGVNNWGYRALTTWSCKADWEN----TNPAKVPEGLDWIQRERVQK----CSSIGSTNTTAQVHPYLFCHFI  153 (380)
T ss_pred             HHHHHHhhcCcccccceeeeEEEEEeeccc----CCcccCCcchhhhhhHHhhh----heeccCCCccceeCHHHHHHHH
Confidence            666654222322     1122222111000    00112333456666654433    1112332345999999999999


Q ss_pred             cccCCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHH--Hhhh-ccccccccccccccEEEccccccc
Q psy16975        398 MQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQ--RAMQ-HDHYAGLLSENCGVQVINGYNLAK  474 (728)
Q Consensus       398 ~~~a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~--t~~~-~g~ada~~VVnAa~~viaG~~~~~  474 (728)
                      +..++  +.|      +|++..          |++.+--.+..++.++-  ++.. ...+|..++|+++     |.   |
T Consensus       154 ~sea~--k~~------~V~lv~----------Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsa-----GP---W  207 (380)
T KOG2852|consen  154 LSEAE--KRG------GVKLVF----------GKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSA-----GP---W  207 (380)
T ss_pred             HHHHH--hhc------CeEEEE----------eeeEEeecccccccccchhhhcCceEEeeeeEEEEec-----CC---C
Confidence            99998  666      244443          44332101122222221  1101 1134444888888     99   9


Q ss_pred             chhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhh----ceeeeecCCc
Q psy16975        475 SEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLA----GAYIIPSYGG  550 (728)
Q Consensus       475 S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~----~~YiiP~~dG  550 (728)
                      +..|++...    +.-.|-+.++.+....+-+++   ..|.++.                  ..++    ..-+++|.++
T Consensus       208 Tskllp~~r----IsglrihsI~l~~~e~~v~~~---avf~~l~------------------~~~g~ei~~pe~y~rkd~  262 (380)
T KOG2852|consen  208 TSKLLPFTR----ISGLRIHSITLSPGEKPVGPS---AVFCELN------------------TMDGLEICKPEEYARKDR  262 (380)
T ss_pred             chhhccccc----cceeeeeeEEecCCCCCCCCc---eEEEEEE------------------eCCCccccCcceeecCCc
Confidence            999876532    333333322211111000000   0000000                  0011    2235667775


Q ss_pred             eE-EeccccccC-----cccccccccchhhhhhcccccccccccccceeeeeecccccceeeeeeccccccceeeeeeee
Q psy16975        551 LV-TLGGTQDYG-----NARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVF  624 (728)
Q Consensus       551 ~v-viGgt~e~~-----~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd~Rie~e~~~~~~~~~~l~~~  624 (728)
                      .+ ++|.+.+..     ..+..++++..+.|.+-+..+.+.+.+..++...+.+-|.+.+.              +.|++
T Consensus       263 Evyicg~~~~e~~lPedsd~v~~npeki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~sn~t--------------g~PvI  328 (380)
T KOG2852|consen  263 EVYICGETDKEHLLPEDSDDVFVNPEKIIELKEMADLVSSELTKSNVLDAQACFLPTSNIT--------------GIPVI  328 (380)
T ss_pred             eEEEecCCCccccCCcccccceeCHHHHHHHHHHHHHhhhhhccchhhhhhhccccccCCC--------------CCceE
Confidence            54 677776552     34567888889999999999999999988999999998888761              11111


Q ss_pred             EEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccC
Q psy16975        625 KVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSA  704 (728)
Q Consensus       625 ~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s  704 (728)
                                                              .                -+.+   .|+-+.||+=.|.+.+
T Consensus       329 ----------------------------------------g----------------et~s---g~yVaagHscWGItna  349 (380)
T KOG2852|consen  329 ----------------------------------------G----------------ETKS---GVYVAAGHSCWGITNA  349 (380)
T ss_pred             ----------------------------------------e----------------ecCC---ceEEeecccccceecC
Confidence                                                    0                0111   3788999999999999


Q ss_pred             CCCceeeeeeeecccccccC
Q psy16975        705 PGSARCAVSVFEQSHKASYN  724 (728)
Q Consensus       705 ~g~A~~~~~l~~~~~~~~~~  724 (728)
                      |+++.++|+|+.+-.+-|-|
T Consensus       350 PaTG~~mAEllldgeaTSan  369 (380)
T KOG2852|consen  350 PATGKCMAELLLDGEATSAN  369 (380)
T ss_pred             cchhHHHHHHHhccceeeee
Confidence            99999999999876655544

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.72  E-value=2.3e-18  Score=196.16  Aligned_cols=222  Identities=14%  Similarity=0.022  Sum_probs=139.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCC--CccccccCCCC--CCCCCch-hhhh---------h
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSD--GAAGLFEPSPN--FMGPDLE-TTKE---------W  315 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~--~agGii~p~~~--l~~~~~~-~~~~---------~  315 (728)
                      +||+||||||+|+|+||+|++..+|.+|+|+||+. ++.++|+  +|+|.++....  ...+... ....         .
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~   80 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ   80 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence            59999999999999999999955699999999954 7778888  46555444320  0111110 1111         2


Q ss_pred             hhhccccccccccc-----ccccEEEcccc-cccchhhhhh----cccccccch--hccc-cCHHHHhhcCCC-C-----
Q psy16975        316 IRYSYDHYAGLLSE-----NCGVQVINGYN-LAKSEKQCAE----NHYLKPVLP--VYKR-MSEEELAEIGPG-D-----  376 (728)
Q Consensus       316 ~~~s~~~~~~l~~~-----~~Gv~~~~G~~-~a~~~~~~~~----~~~~~~~g~--~~~~-L~~~el~~~~P~-~-----  376 (728)
                      ...+.++|..+.+.     ..++..++|.+ ++.++++.+.    ...++..+.  +.++ ++++|+++++|. .     
T Consensus        81 ~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~  160 (483)
T TIGR01320        81 FQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDF  160 (483)
T ss_pred             HHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCCC
Confidence            23455555444321     01122236654 4555555432    222344443  4564 799999999996 1     


Q ss_pred             --cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEec-cccccccCCcchhHHHHhhhc
Q psy16975        377 --WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRG-PLHEKVSSGPRTCAMQRAMQH  451 (728)
Q Consensus       377 --~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g-~~v~~l~~~~~v~~v~t~~~~  451 (728)
                        ...|++++ ++++||..++.+|++.++  ++|       ++|+++++ ++++...+ .+...+.      ...+. ..
T Consensus       161 ~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~--~~G-------v~i~~~t~V~~i~~~~~~~v~v~~~------~~~~g-~~  224 (483)
T TIGR01320       161 SEPVAANWAAEGTDVDFGALTKQLLGYLV--QNG-------TTIRFGHEVRNLKRQSDGSWTVTVK------NTRTG-GK  224 (483)
T ss_pred             CCceEEEEeCCCEEECHHHHHHHHHHHHH--hCC-------CEEEeCCEEEEEEEcCCCeEEEEEe------eccCC-ce
Confidence              24567777 589999999999999998  888       99999998 45543221 1211010      00000 01


Q ss_pred             cccccccccccccEEEcccccccchhhhhhcccc----cccchhccccC
Q psy16975        452 DHYAGLLSENCGVQVINGYNLAKSEKQCAENHYL----KPVLPVYKRMS  496 (728)
Q Consensus       452 g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~----lpv~PvRGQl~  496 (728)
                      ....++.||||+     |+   |+..|+...++.    .++.|++||++
T Consensus       225 ~~i~A~~VV~AA-----G~---~s~~La~~~Gi~~~~~~~i~P~~Gq~l  265 (483)
T TIGR01320       225 RTLNTRFVFVGA-----GG---GALPLLQKSGIPEVKGFAGFPVSGLFL  265 (483)
T ss_pred             EEEECCEEEECC-----Cc---chHHHHHHcCCCcCCCCceeeeeEEEE
Confidence            123444999999     99   999998777643    47899999965

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>KOG2665|consensus

Probab=99.69  E-value=3.4e-18  Score=177.24  Aligned_cols=357  Identities=15%  Similarity=0.168  Sum_probs=222.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAG  325 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~  325 (728)
                      ....+|+|||||||+||++|.+|.-++++.+|.|+|++. .+-..|++|.|.++...|. . +....++++.+..+.+.+
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY-~-P~SLKAklCV~G~~LlY~  122 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYY-K-PGSLKAKLCVEGRELLYE  122 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeee-C-CcccchhhhhccHHHHHH
Confidence            467899999999999999999999877899999999975 4556788888887775432 2 245778899888888877


Q ss_pred             ccccccccEE-Eccc-ccccchhhhhhcc-----cccccchhccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceec
Q psy16975        326 LLSENCGVQV-INGY-NLAKSEKQCAENH-----YLKPVLPVYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPW  396 (728)
Q Consensus       326 l~~~~~Gv~~-~~G~-~~a~~~~~~~~~~-----~~~~~g~~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~  396 (728)
                      ... +..+.. +.|. +++.++++....+     ...+...+.++|+..|+.+++|. .-..++..| +|.+|-..++..
T Consensus       123 yc~-e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls  201 (453)
T KOG2665|consen  123 YCD-EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS  201 (453)
T ss_pred             Hhh-hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence            774 667775 5675 4455555533222     22345678999999999999996 223356666 699999999999


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEE-ecccccccc-CCcchhHHHHhhhccccccccccccccEEEcccccc
Q psy16975        397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVV-RGPLHEKVS-SGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLA  473 (728)
Q Consensus       397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~-~g~~v~~l~-~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~  473 (728)
                      +.+.++  ..|       -+|++|.+ .++.-- ++++...+. .+++         ..+.+++.||-|+     |+   
T Consensus       202 ~~edF~--~~g-------g~i~~n~~l~g~~~n~~~~~~Ypivv~ngk---------~ee~r~~~~vtc~-----gl---  255 (453)
T KOG2665|consen  202 FGEDFD--FMG-------GRIYTNFRLQGIAQNKEATFSYPIVVLNGK---------GEEKRTKNVVTCA-----GL---  255 (453)
T ss_pred             HHHHHH--Hhc-------ccccccceeccchhccCCCCCCceEEecCc---------cceeEEeEEEEec-----cc---
Confidence            999998  877       77787776 222211 011110000 1111         1134445899999     99   


Q ss_pred             cchhhhhhcc--cccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCce
Q psy16975        474 KSEKQCAENH--YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGL  551 (728)
Q Consensus       474 ~S~~L~~~~g--i~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~  551 (728)
                      .+..+....+  ....+.|.||..+.....+.   ....|.     +.  .++.|.     |+    --+..+-|+.+|.
T Consensus       256 ~sdr~aa~sgc~~dPriVpfrG~ylll~~ek~---h~vk~n-----iy--Pvpd~R-----Fp----flGvhftPrm~g~  316 (453)
T KOG2665|consen  256 QSDRCAALSGCELDPRIVPFRGEYLLLKPEKL---HLVKGN-----IY--PVPDPR-----FP----FLGVHFTPRMDGS  316 (453)
T ss_pred             cHhHHHHHhCCCCCCeeeeccchhhhcChHHh---ccccCc-----ee--eCCCCC-----Cc----cccccccCcCCCc
Confidence            5554443322  12357888887542221111   000011     11  011111     11    0234566777887


Q ss_pred             EEecccccc-------------------------------Ccccccccccchhhh----hhcccccccccccccceeeee
Q psy16975        552 VTLGGTQDY-------------------------------GNARLGVDRFDSRAI----LNRTAAVRPEILAAPVEKVWV  596 (728)
Q Consensus       552 vviGgt~e~-------------------------------~~~d~~~~~~~~~~l----l~~~~~l~P~L~~~~I~~~wa  596 (728)
                      +++|-..-.                               ..++..+++...+..    ...+.+++|+|++.+|.+..+
T Consensus       317 iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpa  396 (453)
T KOG2665|consen  317 IWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPA  396 (453)
T ss_pred             eecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcc
Confidence            777743110                               112333333333333    378889999999999999999


Q ss_pred             ecccccceeeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccC
Q psy16975        597 GLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCN  676 (728)
Q Consensus       597 GlRP~tpd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~  676 (728)
                      |+|.-.-|-         +.                                      ++  -.|+||+-- -|  .|  
T Consensus       397 GvRaqald~---------~g--------------------------------------nl--v~DFVfd~g-~g--~~--  422 (453)
T KOG2665|consen  397 GVRAQALDG---------DG--------------------------------------NL--VDDFVFDGG-EG--HL--  422 (453)
T ss_pred             cccchhccC---------CC--------------------------------------CC--chheEEecC-cc--cc--
Confidence            998543330         00                                      00  135666532 12  11  


Q ss_pred             cceEEeecCceEEEEeecccCccccccCCCCceeeeeee
Q psy16975        677 DMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVF  715 (728)
Q Consensus       677 d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~  715 (728)
                                .-+++|..+.-+.|.|+|.++|+.+|+=+
T Consensus       423 ----------~p~llh~rnapSPgaTSSlAIa~mIa~k~  451 (453)
T KOG2665|consen  423 ----------VPRLLHVRNAPSPGATSSLAIAKMIADKF  451 (453)
T ss_pred             ----------ccceEEecCCCCccchhhHHHHHHHHHHh
Confidence                      12488999999999999999998877543

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.64  E-value=9.9e-17  Score=182.39  Aligned_cols=222  Identities=11%  Similarity=0.023  Sum_probs=143.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeec-ccccccCCCC-------ccccccCCCCCCCCCchhhhhhh----
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNMDTTSDG-------AAGLFEPSPNFMGPDLETTKEWI----  316 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk-~~~g~gAS~~-------agGii~p~~~l~~~~~~~~~~~~----  316 (728)
                      ..+||+||||||+|+|+||+|++..++++|+|+|| +.++..+|++       ++|++...+.  .+...-...+.    
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~--~~~~~g~~~~~ka~~   82 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYT--VQQPDGSIDIEKAKE   82 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccC--CcccCCcccHHHHHH
Confidence            45799999999999999999999556999999999 8888899987       7787776431  11100011122    


Q ss_pred             -----hhccccccccccc-c----cccEEEccc-ccccchhhhhh----cccccccch--hcccc-CHHHHhhcCCC---
Q psy16975        317 -----RYSYDHYAGLLSE-N----CGVQVINGY-NLAKSEKQCAE----NHYLKPVLP--VYKRM-SEEELAEIGPG---  375 (728)
Q Consensus       317 -----~~s~~~~~~l~~~-~----~Gv~~~~G~-~~a~~~~~~~~----~~~~~~~g~--~~~~L-~~~el~~~~P~---  375 (728)
                           ..+.++|..+.+. .    .++-...++ .++..+++.+.    ...+++.+.  +++.+ |++|+.+++|.   
T Consensus        83 i~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~  162 (497)
T PRK13339         83 INEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMP  162 (497)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcccC
Confidence                 4555666554320 1    111123454 34434444322    233555555  78999 89999999996   


Q ss_pred             C-----cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEE-eccccccccCCcchhHHHH
Q psy16975        376 D-----WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVV-RGPLHEKVSSGPRTCAMQR  447 (728)
Q Consensus       376 ~-----~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~-~g~~v~~l~~~~~v~~v~t  447 (728)
                      +     ...|++++ ++.+|+..++++|++.+.. ..|       ++|+++++ ++++.. ++.|...+.        .+
T Consensus       163 ~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~-~~G-------v~i~~~~~V~~I~~~~d~~w~v~v~--------~t  226 (497)
T PRK13339        163 GREANEIMAASKIDEGTDVNFGALTRKLAKHLES-HPN-------AQVKYNHEVVDLERLSDGGWEVTVK--------DR  226 (497)
T ss_pred             CCCCCcceeEEECCCceecCHHHHHHHHHHHHHh-CCC-------cEEEeCCEEEEEEECCCCCEEEEEE--------ec
Confidence            1     23466667 4899999999999999850 346       89999888 445433 222221110        01


Q ss_pred             hhhc-cccccccccccccEEEcccccccchhhhhhcccc----cccchhccccC
Q psy16975        448 AMQH-DHYAGLLSENCGVQVINGYNLAKSEKQCAENHYL----KPVLPVYKRMS  496 (728)
Q Consensus       448 ~~~~-g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~----lpv~PvRGQl~  496 (728)
                      ..+. ....++.||||+     |+   |+..|+...++.    .++.|+|||++
T Consensus       227 ~~g~~~~i~Ad~VV~AA-----Ga---wS~~La~~~Gi~~~~~~~i~PvkGq~l  272 (497)
T PRK13339        227 NTGEKREQVADYVFIGA-----GG---GAIPLLQKSGIPESKHLGGFPISGQFL  272 (497)
T ss_pred             CCCceEEEEcCEEEECC-----Cc---chHHHHHHcCCCccCCCceEeeeEEEE
Confidence            1000 023334999999     99   999998887653    47899999964

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.64  E-value=9.6e-17  Score=183.27  Aligned_cols=225  Identities=14%  Similarity=0.024  Sum_probs=139.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCC--CccccccCCC---CCCCC--Cchhhhhhh---
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSD--GAAGLFEPSP---NFMGP--DLETTKEWI---  316 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~--~agGii~p~~---~l~~~--~~~~~~~~~---  316 (728)
                      +..+||+||||||+|+|+||+|++..+|++|+||||+. ++.++|+  +|+|..+...   +...+  +.....+.+   
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~   82 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI   82 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence            35689999999999999999999855689999999975 4666666  5666554421   11110  011111221   


Q ss_pred             ----hhccccccccccccccc--E-----EEcccc-cccchhhhhh----cccccccch--hccc-cCHHHHhhcCCCC-
Q psy16975        317 ----RYSYDHYAGLLSENCGV--Q-----VINGYN-LAKSEKQCAE----NHYLKPVLP--VYKR-MSEEELAEIGPGD-  376 (728)
Q Consensus       317 ----~~s~~~~~~l~~~~~Gv--~-----~~~G~~-~a~~~~~~~~----~~~~~~~g~--~~~~-L~~~el~~~~P~~-  376 (728)
                          ..+.++|..+.+  .|+  +     .+.|++ ++.++++.+.    ...++..+.  .+++ ++++|+++.+|.- 
T Consensus        83 ~~~~~~s~~~~~~l~~--~g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~  160 (494)
T PRK05257         83 NEQFQISRQFWAYLVE--KGVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMM  160 (494)
T ss_pred             HHHHHHHHHHHHHHHH--cCCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcccc
Confidence                344455544432  222  1     255654 4555555432    233444443  4566 4999999999851 


Q ss_pred             -------cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEecc-ccccccCCcchhHHH
Q psy16975        377 -------WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGP-LHEKVSSGPRTCAMQ  446 (728)
Q Consensus       377 -------~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~-~v~~l~~~~~v~~v~  446 (728)
                             ...|++++ ++.+|+..++.+|.+.++  +.|      +++|+++|+ ++++...+. +...+..      ..
T Consensus       161 ~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~--~~G------gv~i~~~teV~~I~~~~dg~~~v~~~~------~~  226 (494)
T PRK05257        161 EGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQ--KQG------NFELQLGHEVRDIKRNDDGSWTVTVKD------LK  226 (494)
T ss_pred             cCCCCCcceeEEEcCCceEECHHHHHHHHHHHHH--hCC------CeEEEeCCEEEEEEECCCCCEEEEEEE------cC
Confidence                   34567777 589999999999999998  654      279999988 455432221 2100100      00


Q ss_pred             HhhhccccccccccccccEEEcccccccchhhhhhcccc----cccchhccccCH
Q psy16975        447 RAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYL----KPVLPVYKRMSE  497 (728)
Q Consensus       447 t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~----lpv~PvRGQl~~  497 (728)
                      +. ......++.||+|+     |.   |+..|+...++.    .++.|++||++.
T Consensus       227 ~G-~~~~i~A~~VVvaA-----Gg---~s~~L~~~~Gi~~~~~~~i~PvrGq~l~  272 (494)
T PRK05257        227 TG-EKRTVRAKFVFIGA-----GG---GALPLLQKSGIPEAKGYGGFPVSGQFLV  272 (494)
T ss_pred             CC-ceEEEEcCEEEECC-----Cc---chHHHHHHcCCCccCCCCeeeeeEEEEE
Confidence            00 00123444999999     99   999998877643    368999999653

>KOG3923|consensus

Probab=99.44  E-value=5e-14  Score=146.03  Aligned_cols=54  Identities=37%  Similarity=0.780  Sum_probs=50.3

Q ss_pred             eecccCccchhhhhhhhhccc-ccccceeeccccccccccCcceEEeecCceEEE
Q psy16975        637 RFKAAGGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI  690 (728)
Q Consensus       637 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v  690 (728)
                      .|..+||+|++++|+||+|+. .+||||||||||||++|+.|.+|||+|||+++|
T Consensus       160 ~l~e~Gvef~~r~v~~l~E~~~~~~DVivNCtGL~a~~L~gDd~~yPiRGqVl~V  214 (342)
T KOG3923|consen  160 RLTENGVEFVQRRVESLEEVARPEYDVIVNCTGLGAGKLAGDDDLYPIRGQVLKV  214 (342)
T ss_pred             HHHhcCcEEEEeeeccHHHhccCCCcEEEECCccccccccCCcceeeccceEEEe
Confidence            455689999999999999999 789999999999999999999999999999875

>KOG0042|consensus

Probab=99.43  E-value=6.1e-15  Score=162.46  Aligned_cols=303  Identities=15%  Similarity=0.074  Sum_probs=177.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccc----
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA----  324 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~----  324 (728)
                      .++||+|||||.+|.-+|+-.+-  +|++|.++|++..++|||+.+.-+++-.....   .....++..+-|+..+    
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~T--RGLktaLVE~~DF~SGTSSkSTKLiHGGVRYL---ekAi~~lD~~qyrlV~eaL~  140 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAAT--RGLKTALVEAGDFASGTSSKSTKLIHGGVRYL---EKAISNLDYEQYRLVKEALN  140 (680)
T ss_pred             CcccEEEECCCccCcceeehhhc--ccceeEEEecccccCCccccchhhhcccHHHH---HHHHHhcCHHHHHHHHHHHH
Confidence            45999999999999999999999  99999999999999999998877666532100   0111222222222222    


Q ss_pred             ---cccc--cc----cccEEEcccccccchh---hhhhccccc--ccchhccccCHHHHhhcCCC----CcceeEeEEee
Q psy16975        325 ---GLLS--EN----CGVQVINGYNLAKSEK---QCAENHYLK--PVLPVYKRMSEEELAEIGPG----DWKYGIYMSTL  386 (728)
Q Consensus       325 ---~l~~--~~----~Gv~~~~G~~~a~~~~---~~~~~~~~~--~~g~~~~~L~~~el~~~~P~----~~~~G~~~~~g  386 (728)
                         ++++  +.    .-+.+ +-|.++.-+-   ......+..  +.......++.++.-+++|.    ...+++.|-+|
T Consensus       141 ER~~lle~APhLs~~lPIml-Pvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDG  219 (680)
T KOG0042|consen  141 ERANLLEIAPHLSQPLPIML-PVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDG  219 (680)
T ss_pred             HHHHHhhcCccccCCcceee-ehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecC
Confidence               1221  11    01110 1110000000   000111111  12233567899999999997    35667777789


Q ss_pred             eecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHH-----HHhhhcccccccccc
Q psy16975        387 VIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAM-----QRAMQHDHYAGLLSE  460 (728)
Q Consensus       387 ~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v-----~t~~~~g~ada~~VV  460 (728)
                      +.|-.+++..++--|.  ++|       +.+..|.+ .++...         ..+++.+.     .|. ..-...++.||
T Consensus       220 Q~nDaRmnl~vAlTA~--r~G-------A~v~Nh~ev~~Llkd---------~~~kv~Ga~~rD~iTG-~e~~I~Ak~VV  280 (680)
T KOG0042|consen  220 QHNDARMNLAVALTAA--RNG-------ATVLNHVEVVSLLKD---------KDGKVIGARARDHITG-KEYEIRAKVVV  280 (680)
T ss_pred             CCchHHHHHHHHHHHH--hcc-------hhhhhHHHHHHHhhC---------CCCceeeeEEEEeecC-cEEEEEEEEEE
Confidence            9999999998888877  888       77777776 222211         11222121     111 01134555999


Q ss_pred             ccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhh
Q psy16975        461 NCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLA  540 (728)
Q Consensus       461 nAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~  540 (728)
                      |||     |.+.|..+++- +.....-+.|.-|.-                     +++ |.-+.|.-..-.-|..-+..
T Consensus       281 NAT-----GpfsDsIr~Md-d~~~~~i~~pSsGvH---------------------IVl-P~yY~P~~mGlldP~TsDgR  332 (680)
T KOG0042|consen  281 NAT-----GPFSDSIRKMD-DEDAKPICVPSSGVH---------------------IVL-PGYYCPENMGLLDPKTSDGR  332 (680)
T ss_pred             eCC-----CCccHHHHhhc-ccccCceeccCCcee---------------------EEc-ccccCCcccccccCCCCCCc
Confidence            999     99555333332 222122244544431                     222 12222321110000011133


Q ss_pred             ceeeeecCCceEEeccccccCc--ccccccccchhhhhhccccccc---ccccccceeeeeeccccccee
Q psy16975        541 GAYIIPSYGGLVTLGGTQDYGN--ARLGVDRFDSRAILNRTAAVRP---EILAAPVEKVWVGLRPYRHHV  605 (728)
Q Consensus       541 ~~YiiP~~dG~vviGgt~e~~~--~d~~~~~~~~~~ll~~~~~l~P---~L~~~~I~~~waGlRP~tpd~  605 (728)
                      -.|+.|..+ ..+.|.|..+..  .++.|++++++.||+.+..++-   ++...+|+..|+|+||...|+
T Consensus       333 ViFflPWqg-~TIaGTTD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP  401 (680)
T KOG0042|consen  333 VIFFLPWQG-KTIAGTTDIPTSVTHSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDP  401 (680)
T ss_pred             EEEEeccCC-ceeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCC
Confidence            467777764 488899988843  4678889999999999988753   467788999999999999885

>KOG1116|consensus

Probab=99.32  E-value=1.6e-12  Score=145.46  Aligned_cols=71  Identities=34%  Similarity=0.568  Sum_probs=66.5

Q ss_pred             ccchhHhHHHHHhhcCCCccc--ccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccc
Q psy16975          5 HHFGVWLIEEFLIGLASGSHI--KVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVT   75 (728)
Q Consensus         5 ~~~~r~~~l~~~~~~~~g~h~--~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~   75 (728)
                      ..+||.+++.+|++|++|+|+  .+|+|.|++|+|||+||.++.||++||||+++++|+|+||||++++++..
T Consensus       494 ~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~~~~~~~vDGE~~~~ep~q~~v~p~~i~~~s~  566 (579)
T KOG1116|consen  494 AGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVTPSGYFAVDGELVPLEPLQVQVLPGLILTLSG  566 (579)
T ss_pred             cCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEecCCceEEecccEeeccceeEEecccceeEEec
Confidence            347999999999999999997  88999999999999999999999999999999999999999999955555

>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase

Probab=98.62  E-value=3.6e-08  Score=112.62  Aligned_cols=70  Identities=31%  Similarity=0.478  Sum_probs=63.8

Q ss_pred             cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecC------CCcEEEEcceEe---------------eeccccee
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHS------SGSYIVVDGEVL---------------DYGPIQAE   64 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~------~~g~i~vDGE~~---------------~~~~~q~e   64 (728)
                      +.||+++|.+|..+.+|+|+..|+|+|+|+++|+|+|..      +.+++.||||.+               .|+|+|++
T Consensus       390 ~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~~~al~~~~~~~~~  469 (481)
T PLN02958        390 DCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCDQKALMSYDKLQIS  469 (481)
T ss_pred             CCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeeccccccccCceEEE
Confidence            579999999999999999999999999999999999952      458999999988               57899999


Q ss_pred             eccccccccccc
Q psy16975         65 IFPGLIERTVTT   76 (728)
Q Consensus        65 v~~~l~~~~~~~   76 (728)
                      |||||+ +++||
T Consensus       470 ~~~~~~-~~~~~  480 (481)
T PLN02958        470 VDQGLA-TLFSP  480 (481)
T ss_pred             EcCCce-EeecC
Confidence            999999 88886

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.48  E-value=1.8e-07  Score=98.70  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=41.4

Q ss_pred             hceeeeecCCceEEeccccccCcccccccccchhhhhhcccccccccccccceeeeeecccccc
Q psy16975        540 AGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH  603 (728)
Q Consensus       540 ~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tp  603 (728)
                      ...|++|..++++.+|-+.....     +....+..++...+.+|.+.+.++.+.+.+..|+..
T Consensus       195 ~~~~~~P~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  253 (295)
T TIGR02032       195 GYGWVFPKGDGTANVGVGSRSAE-----EGEDLKKYLKDFLARRPELKDAETVEVIGAPIPIGR  253 (295)
T ss_pred             ceEEEEeCCCCeEEEeeeeccCC-----CCCCHHHHHHHHHHhCcccccCcEEeeeceeeccCC
Confidence            45789999888887775543322     344556667777777888888888887887777753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.37  E-value=4.8e-08  Score=111.31  Aligned_cols=49  Identities=22%  Similarity=0.279  Sum_probs=41.7

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc--cccCCCCcccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN--MDTTSDGAAGL  297 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~--g~gAS~~agGi  297 (728)
                      |+.++||||||+|++|+++|++|++  .|.+|+||||...  ..++|..++|+
T Consensus         1 ~~~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~s~~s~G~   51 (466)
T PRK08274          1 MASMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGNSRHTRNL   51 (466)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcccccCCce
Confidence            3567899999999999999999999  8999999999863  34677777774

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.23  E-value=1.5e-07  Score=108.56  Aligned_cols=50  Identities=18%  Similarity=0.256  Sum_probs=41.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      .+.++||||||+|++|+++|+++++  .|.+|+||||.....++|..++|.+
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~s~~s~Gg~  107 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGNTMKASSGM  107 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccccCCcc
Confidence            3457899999999999999999999  8999999999876666666554443

>PRK06185 hypothetical protein; Provisional

Probab=98.19  E-value=1.7e-06  Score=96.49  Aligned_cols=37  Identities=30%  Similarity=0.410  Sum_probs=34.2

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+.+||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~   39 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHA   39 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            4567899999999999999999999  899999999974

>TIGR00551 nadB L-aspartate oxidase

Probab=98.10  E-value=9.9e-07  Score=101.34  Aligned_cols=47  Identities=30%  Similarity=0.344  Sum_probs=39.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ++||+|||+|++||++|+.+++  .|. |+||||.....++|..++|.+.
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~g~s~~a~Ggi~   48 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTEGNSFYAQGGIA   48 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCCCcchhcCcCee
Confidence            4699999999999999999999  786 9999999766677766655443

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.97  E-value=5.2e-06  Score=92.47  Aligned_cols=222  Identities=14%  Similarity=0.088  Sum_probs=119.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCC--CCccccccCCC----CCCC-CCch----hhhh--
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTS--DGAAGLFEPSP----NFMG-PDLE----TTKE--  314 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS--~~agGii~p~~----~l~~-~~~~----~~~~--  314 (728)
                      .++|||+|||||+|++.++.|++..+.++|+|+||-. ++..+|  ..|+|-.+...    |-.. ++..    +...  
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In   81 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN   81 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence            4689999999999999999999977899999999954 444444  24444443321    1111 1110    1111  


Q ss_pred             -hhhhccccccccccccccc-----EE---Ecccccccchhhhh----hcccccc--cchhcccc-CHHHHhhcCCC---
Q psy16975        315 -WIRYSYDHYAGLLSENCGV-----QV---INGYNLAKSEKQCA----ENHYLKP--VLPVYKRM-SEEELAEIGPG---  375 (728)
Q Consensus       315 -~~~~s~~~~~~l~~~~~Gv-----~~---~~G~~~a~~~~~~~----~~~~~~~--~g~~~~~L-~~~el~~~~P~---  375 (728)
                       -..-+.++|..+.+  .|.     .|   .+-+.+..-+++.+    +.+.++.  .-...+.. |.+++++..|.   
T Consensus        82 eqFevsrqfWs~lv~--~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~  159 (488)
T PF06039_consen   82 EQFEVSRQFWSYLVE--NGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVME  159 (488)
T ss_pred             HHHHHHHHHHHHHHH--CCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecC
Confidence             11233344444432  121     11   11122222222211    1122222  12233444 57777777664   


Q ss_pred             -----CcceeEeEEe-eeecCccceecccccCCCCCC-CCCCceeeEEEEEeeC-ceeEEE-eccccccccCCcchhHHH
Q psy16975        376 -----DWKYGIYMST-LVIPNRIFLPWCMQKDGPSNL-GERPSTLSVELYHYNR-DSLTVV-RGPLHEKVSSGPRTCAMQ  446 (728)
Q Consensus       376 -----~~~~G~~~~~-g~idp~~ll~~L~~~a~~~~~-G~~~~~l~v~I~e~t~-~~V~~~-~g~~v~~l~~~~~v~~v~  446 (728)
                           ....+.+.+. --+|=..+.+.|.+.+.  +. |       ++++.+++ ++++.. ++.|...+.      ...
T Consensus       160 gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~--~~~~-------~~~~~~~eV~~i~r~~dg~W~v~~~------~~~  224 (488)
T PF06039_consen  160 GRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQ--KQKG-------FELHLNHEVTDIKRNGDGRWEVKVK------DLK  224 (488)
T ss_pred             CCCCCCceeeeecCCCccccHHHHHHHHHHHHH--hCCC-------cEEEecCEeCeeEECCCCCEEEEEE------ecC
Confidence                 1112233332 46677788888888887  55 6       89999888 556544 232332111      001


Q ss_pred             HhhhccccccccccccccEEEcccccccchhhhhhccc----ccccchhccccC
Q psy16975        447 RAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHY----LKPVLPVYKRMS  496 (728)
Q Consensus       447 t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi----~lpv~PvRGQl~  496 (728)
                      +. ......++.|++.|     |.   +|-.|+...++    ..-.+|+-||-+
T Consensus       225 ~~-~~~~v~a~FVfvGA-----GG---~aL~LLqksgi~e~~gyggfPVsG~fl  269 (488)
T PF06039_consen  225 TG-EKREVRAKFVFVGA-----GG---GALPLLQKSGIPEGKGYGGFPVSGQFL  269 (488)
T ss_pred             CC-CeEEEECCEEEECC-----ch---HhHHHHHHcCChhhcccCCCcccceEE
Confidence            11 02234445899988     88   88888887663    234678888743

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG1298|consensus

Probab=97.89  E-value=3.6e-06  Score=90.91  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=34.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....+||+||||||+|++.||.|++  .|.+|.||||+.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERDl   78 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAK--DGRRVHVIERDL   78 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhh--CCcEEEEEeccc
Confidence            3567899999999999999999999  899999999986

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.79  E-value=6.2e-06  Score=94.30  Aligned_cols=43  Identities=35%  Similarity=0.538  Sum_probs=35.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG  296 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG  296 (728)
                      +||+|||||++|+++|+.+++  .|.+|+||||... .++|..+.|
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~-~~~s~~a~g   44 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK-KSNSYLAQA   44 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC-CCCcHHHcC
Confidence            699999999999999999999  8999999999853 334444433

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.77  E-value=9.8e-06  Score=88.70  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=33.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+||+|||||-+|+.+|..+++  +|++|+|||+..
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~   36 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGP   36 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCc
Confidence            56899999999999999999999  999999999975

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.76  E-value=1.7e-05  Score=66.53  Aligned_cols=30  Identities=40%  Similarity=0.561  Sum_probs=27.2

Q ss_pred             EeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        255 ILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       255 VIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |||||+.||++|+.|++  .|++|+|+|+...
T Consensus         1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHH--TTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHH--CCCcEEEEecCcc
Confidence            89999999999999999  8999999999763

...

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.70  E-value=3e-05  Score=78.55  Aligned_cols=48  Identities=25%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ..||+|||||-+||++||+|++  +|.+|+|+|+.....| -.|-||++.+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GG-G~w~GGmlf~   77 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGG-GIWGGGMLFN   77 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCC-cccccccccc
Confidence            5699999999999999999999  9999999999864322 2355666555

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.67  E-value=2.7e-05  Score=88.09  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=41.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCC-CcEEEeecccccccCCCCccccccC
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ||||||+|++|+++|+++++  .| .+|+||||.....++|..++|.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s~~s~g~~~~   48 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNSAIAAGGMNA   48 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcccccCceeec
Confidence            79999999999999999999  89 9999999998777888887766544

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07121 hypothetical protein; Validated

Probab=97.66  E-value=2.8e-05  Score=89.46  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=43.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||||||+|++|+++|+++++  .|.+|+||||.....++|..++|++.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~~sgG~~~   67 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATALSGGVIY   67 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCeEEE
Confidence            47899999999999999999999  89999999998876778888887654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.65  E-value=2.7e-05  Score=86.40  Aligned_cols=39  Identities=26%  Similarity=0.485  Sum_probs=35.0

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |++..+||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~   41 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPP   41 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCC
Confidence            34567899999999999999999999  8999999999753

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.64  E-value=1.4e-05  Score=92.39  Aligned_cols=47  Identities=28%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc-ccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g-~gAS~~agGii  298 (728)
                      ..+.||+|||+|++||++|++++.    .+|+||||...+ .++|..+.|.+
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~~~gg~s~~a~Ggi   54 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPLGEGASSAWAQGGI   54 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCCCCCcchHHhhhcc
Confidence            457899999999999999999975    499999998763 45565555444

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.63  E-value=3.5e-05  Score=88.68  Aligned_cols=39  Identities=31%  Similarity=0.430  Sum_probs=34.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT  289 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~g  289 (728)
                      +.+||||||||+.||+||..|++  .|++|+|+||.....|
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCc
Confidence            46899999999999999999999  9999999999764433

>PLN02204 diacylglycerol kinase

Probab=97.61  E-value=6.2e-05  Score=86.89  Aligned_cols=70  Identities=24%  Similarity=0.275  Sum_probs=61.8

Q ss_pred             cchhHhHHHHHhhcC-C-CcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccc
Q psy16975          6 HFGVWLIEEFLIGLA-S-GSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVT   75 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~-~-g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~   75 (728)
                      +.|++++|.+|..+- + |.|+..|+|+|.|+++|+|++......+.+|||.+...|++++|+|++.+.+.+
T Consensus       526 ~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s~~~~~~~niDGE~~~~~~v~v~V~~~al~lfa~  597 (601)
T PLN02204        526 DCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFTSFGDESVWNLDGEIFQAHQLSAQVFRGLVNLFAS  597 (601)
T ss_pred             CCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEEECCCCceEEeCCCcCCCccEEEEEEcCeeEEEec
Confidence            578999999887775 3 699999999999999999999776678999999999999999999999965554

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.59  E-value=5.5e-05  Score=84.59  Aligned_cols=39  Identities=28%  Similarity=0.434  Sum_probs=35.3

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .+...+||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~   52 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPA   52 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCc
Confidence            35567899999999999999999999  9999999999853

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.58  E-value=3.9e-05  Score=85.35  Aligned_cols=38  Identities=24%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +...+||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         3 ~~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~   40 (392)
T PRK08773          3 RRSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREP   40 (392)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCC
Confidence            3567899999999999999999999  9999999999753

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.53  E-value=6.4e-05  Score=84.11  Aligned_cols=49  Identities=29%  Similarity=0.348  Sum_probs=38.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      +++||+|||||.+|+++|+.|++  .|++|+|+||+... +.-..+++.+.+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~-G~k~~~~~~~~~   50 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEP-GAKPCCGGGLSP   50 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCC-CCCccccceech
Confidence            57899999999999999999999  89999999997532 222223455555

>PRK07208 hypothetical protein; Provisional

Probab=97.52  E-value=5.7e-05  Score=86.40  Aligned_cols=37  Identities=38%  Similarity=0.530  Sum_probs=33.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+...||+|||||++||++||+|++  +|++|+|+|+..
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~   37 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADP   37 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            4567799999999999999999999  899999999965

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.51  E-value=6.1e-05  Score=81.19  Aligned_cols=35  Identities=46%  Similarity=0.651  Sum_probs=30.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||++||++|+.|++  .|++|+|||+...
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~   35 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHh--cccccccchhccc
Confidence            3699999999999999999999  9999999999753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.51  E-value=5.8e-05  Score=76.82  Aligned_cols=35  Identities=40%  Similarity=0.532  Sum_probs=29.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||.+||++||+|++  .|++|+|+|++.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~   50 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKL   50 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCC
Confidence            46899999999999999999999  899999999975

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.49  E-value=7.3e-05  Score=78.83  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..+||+|||||.+||++|++|++  .|++|+||||...
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~   55 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLA   55 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence            36899999999999999999999  8999999999864

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.49  E-value=5.9e-05  Score=84.53  Aligned_cols=47  Identities=23%  Similarity=0.460  Sum_probs=38.4

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ||+|||+|++||++|+++++  .|.+|+||||.....++|..++|.+..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~~s~g~~~~   47 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSAFSSGGFDA   47 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGGGTCSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccccccCceee
Confidence            89999999999999999999  999999999988655677666665544

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.49  E-value=7.5e-05  Score=84.53  Aligned_cols=35  Identities=34%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|+.|++  .|++|+||||..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~   38 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGN   38 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCC
Confidence            46999999999999999999999  999999999975

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.49  E-value=7.8e-05  Score=86.36  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=40.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcc--ccccCC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA--GLFEPS  301 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~ag--Gii~p~  301 (728)
                      .++||||||+| +|+++|+++++  .|.+|+||||.....++|..++  |++.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~   57 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTAYSGGGGMWFPC   57 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcceecCCCceeccCC
Confidence            47799999999 99999999999  8999999999876556665543  466653

>PRK09126 hypothetical protein; Provisional

Probab=97.48  E-value=6e-05  Score=83.65  Aligned_cols=36  Identities=31%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +++||+|||||++|+++|+.|++  .|++|+|+||...
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCc
Confidence            36899999999999999999999  9999999999864

>PRK10015 oxidoreductase; Provisional

Probab=97.48  E-value=7.7e-05  Score=84.48  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .++||+|||||.+|+++|+.|++  .|++|+||||...
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~   39 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDS   39 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCC
Confidence            46899999999999999999999  9999999999754

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.48  E-value=5.6e-05  Score=84.49  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=32.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence            4799999999999999999999  899999999975

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.47  E-value=6.2e-05  Score=84.25  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=32.6

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +..+||+|||||++|+++|+.|++  .|++|+|+|+.
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~   36 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ   36 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            346899999999999999999999  89999999996

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.47  E-value=8.7e-05  Score=84.59  Aligned_cols=38  Identities=26%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+.+||+|||||.+|+++|+.|++  .|++|+|+|+..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            45667999999999999999999999  999999999975

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.45  E-value=7.5e-05  Score=82.96  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=33.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++..||+|||||++||++|+.|++  .|++|+|+||..
T Consensus         2 ~~~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~   37 (396)
T PRK08163          2 TKVTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAA   37 (396)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCc
Confidence            456799999999999999999999  999999999975

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.45  E-value=8.7e-05  Score=87.39  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=41.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ..||+|||+|++||++|+++++  .|.+|+||||.....++|..++|.+.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~g~s~~a~Ggi~   50 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKRSHSVCAQGGIN   50 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCCCcccccCCCeE
Confidence            4599999999999999999999  89999999999877677777755443

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.44  E-value=7.5e-05  Score=87.85  Aligned_cols=50  Identities=22%  Similarity=0.309  Sum_probs=41.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      |..++||+|||+|++||++|+++++  . .+|+|+||..+..++|..++|.+.
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g~s~~a~Ggi~   51 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRSHTGAAQGGMC   51 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCCCchhhhcchh
Confidence            4457899999999999999999998  5 899999999877777776655443

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.43  E-value=9e-05  Score=82.72  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .+||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence            4799999999999999999999  9999999999863

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08013 oxidoreductase; Provisional

Probab=97.43  E-value=7.5e-05  Score=83.53  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=33.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .++||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~   37 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP   37 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence            35899999999999999999999  9999999999763

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.43  E-value=7.4e-05  Score=82.87  Aligned_cols=35  Identities=34%  Similarity=0.441  Sum_probs=32.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCC---CCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFP---NCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~---G~~VtVIEk~~  285 (728)
                      +.+||+|||||++|+++|+.|++  .   |++|+|+|+..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~--~~~~G~~v~v~E~~~   39 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAFA   39 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhh--cccCCCEEEEEeCCC
Confidence            56899999999999999999999  7   99999999964

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.40  E-value=0.0001  Score=87.32  Aligned_cols=49  Identities=24%  Similarity=0.298  Sum_probs=41.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||+|||+|++|+++|+.+++  .|.+|+||||...+.++|..++|.+.
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~g~s~~a~Ggi~   55 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGKAHTVMAEGGCA   55 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcceecCccce
Confidence            46899999999999999999999  89999999998776667766655443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.40  E-value=8.8e-05  Score=82.47  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=32.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence            4799999999999999999999  899999999874

>PRK07045 putative monooxygenase; Reviewed

Probab=97.40  E-value=9.3e-05  Score=82.22  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +.++||+|||||++|+++|+.|++  .|++|+|+|+...
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~   39 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAAR   39 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCc
Confidence            456899999999999999999999  9999999999863

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.40  E-value=9.8e-05  Score=86.69  Aligned_cols=50  Identities=24%  Similarity=0.315  Sum_probs=43.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      .++||||||+|++|+++|+++++  .|.+|+||||.....++|..++|++..
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~~~s~g~~~~   57 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTTAFSGGVLWI   57 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCccceeCcEecc
Confidence            46899999999999999999999  899999999988777787777776443

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.40  E-value=8.7e-05  Score=82.17  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=33.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +.+||+|||||++|+++|+.|++  .|++|+|+|++..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCC
Confidence            46799999999999999999999  8999999999754

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.38  E-value=9.1e-05  Score=82.26  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=33.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence            456899999999999999999999  899999999975

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.37  E-value=0.0001  Score=85.97  Aligned_cols=49  Identities=27%  Similarity=0.375  Sum_probs=41.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      ..++||+|||+|++||++|+.+++  .|.+|+||||.....++|..++|.+
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g~s~~a~Ggi   62 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDGSTRWAQGGI   62 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCCchhhhccce
Confidence            357899999999999999999999  8999999999887666776665543

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.37  E-value=0.00013  Score=85.44  Aligned_cols=51  Identities=16%  Similarity=0.261  Sum_probs=43.1

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      |...++||+|||+|.+|+++|+.+++  .|.+|+||||.....++|..++|.+
T Consensus         3 ~~~~~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~~~~~g~~   53 (557)
T PRK07843          3 MTVQEYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGSTARSGGGV   53 (557)
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccccccCcee
Confidence            34557899999999999999999999  8999999999876666777775543

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.37  E-value=9.6e-05  Score=86.78  Aligned_cols=52  Identities=33%  Similarity=0.535  Sum_probs=39.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCC-CccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD-GAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~-~agGii~p  300 (728)
                      .++||+|||||++||++|+++++..+|.+|+||||.....++|. ..||+...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~   54 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAAS   54 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhh
Confidence            46799999999999999999998323689999999876544444 44454433

>PRK07236 hypothetical protein; Provisional

Probab=97.35  E-value=0.00012  Score=81.48  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..||+|||||++||++|+.|++  .|++|+|+||..
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~   39 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSP   39 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            45799999999999999999999  899999999975

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.34  E-value=0.00012  Score=85.71  Aligned_cols=49  Identities=27%  Similarity=0.426  Sum_probs=40.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||+|||+|++||++|+.+++  .|.+|+||||.....++|..++|.+.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~s~~a~Ggi~   52 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSHSAAAEGGIA   52 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCcchhhccchh
Confidence            46899999999999999999999  89999999998765566655544443

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.34  E-value=0.00011  Score=86.53  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=42.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      ..++||||||+|++|+++|+.+++  .|.+|+||||.....++|..++|.+
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~t~~s~G~i   57 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGSTALSGGGI   57 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCchHHHhCCCc
Confidence            346899999999999999999999  8999999999987677777665544

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.34  E-value=0.00014  Score=81.21  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=32.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||++||++|+.|++  .|++|+|+|+...
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence            5799999999999999999999  9999999999863

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.32  E-value=0.00016  Score=85.14  Aligned_cols=50  Identities=28%  Similarity=0.425  Sum_probs=41.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ...+||+|||+|++||++|+++++  .|.+|+||||.....++|..+.|.+.
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g~t~~a~Ggi~   59 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRSHTVAAQGGIG   59 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhccCCcc
Confidence            456899999999999999999999  89999999998766666666654443

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.31  E-value=0.00018  Score=76.02  Aligned_cols=36  Identities=36%  Similarity=0.491  Sum_probs=33.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .++||+|||||.+|+++|++|++  +|++|+|+|+...
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~   59 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLS   59 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCC
Confidence            46899999999999999999999  9999999999753

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.30  E-value=0.00015  Score=85.27  Aligned_cols=49  Identities=27%  Similarity=0.331  Sum_probs=40.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCC---CcEEEeecccccccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPN---CDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G---~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      ..++||+|||+|++||++|+.+++  .|   .+|+||||.....++|..++|.+
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~~s~~a~Gg~   54 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRSHSVSAEGGT   54 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCCCceeccccc
Confidence            346799999999999999999999  77   89999999987666666665433

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.30  E-value=0.00014  Score=86.00  Aligned_cols=49  Identities=24%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||+|||+|++||++|+++++  .|.+|+||||.....++|..+.|.+.
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~   76 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRSHTVAAQGGIN   76 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCCCchhhcCCee
Confidence            46899999999999999999999  89999999998876666666655443

>TIGR02730 carot_isom carotene isomerase

Probab=97.30  E-value=0.00014  Score=83.86  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      +||+|||||+.||++|..|++  .|++|+|+||+....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~G   36 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPG   36 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCC
Confidence            589999999999999999999  999999999986443

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.30  E-value=0.00015  Score=84.80  Aligned_cols=48  Identities=15%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      .++||+|||+|++|+++|++|++  .|.+|+|||+.....++|..++|.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~s~g~~   52 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAMSGGVL   52 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeceeccee
Confidence            46899999999999999999999  8999999999876677777777654

>PLN02576 protoporphyrinogen oxidase

Probab=97.30  E-value=0.00017  Score=82.93  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=32.6

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCC-CCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~  285 (728)
                      +.++||+|||||++||++||+|++  . |++|+|+|+..
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~   46 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARD   46 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCC
Confidence            345699999999999999999999  7 99999999975

>PRK06847 hypothetical protein; Provisional

Probab=97.28  E-value=0.00016  Score=79.70  Aligned_cols=36  Identities=36%  Similarity=0.498  Sum_probs=32.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....||+|||||++||++|+.|++  .|++|+|+|+..
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~   37 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDP   37 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            346799999999999999999999  899999999974

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.28  E-value=0.00015  Score=85.56  Aligned_cols=49  Identities=22%  Similarity=0.343  Sum_probs=41.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ..+||+|||||++||++|+++++  .|.+|+||||..+..++|..+.|.+.
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s~~a~Ggi~   59 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHTVAAQGGIS   59 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcchhhhcCCcc
Confidence            46899999999999999999999  89999999998766666666644443

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.28  E-value=0.00016  Score=80.65  Aligned_cols=33  Identities=45%  Similarity=0.599  Sum_probs=31.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+||+|||||++||++|+.|++  .|++|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccC
Confidence            4699999999999999999999  99999999998

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.27  E-value=0.00015  Score=80.77  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=31.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      |||+|||||.+|+++|++|++  .|++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR--AGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            699999999999999999999  89999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.27  E-value=0.00017  Score=84.15  Aligned_cols=48  Identities=25%  Similarity=0.334  Sum_probs=39.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc--ccccCCCCcccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF--NMDTTSDGAAGL  297 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~--~g~gAS~~agGi  297 (728)
                      ..++||+|||+|.+||++|+.+++  .|.+|+||||..  ...++|..++|.
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~s~Gg   51 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFWSLGG   51 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceeccCCc
Confidence            357899999999999999999999  899999999987  334556555443

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.27  E-value=0.00015  Score=85.41  Aligned_cols=48  Identities=19%  Similarity=0.381  Sum_probs=40.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      .++||+|||+|++||++|+++++  .|.+|+||||..+..++|..+.|.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t~~a~Ggi   53 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHTVSAQGGI   53 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCccHHhhhhH
Confidence            46799999999999999999999  8999999999876666666554444

>PRK06834 hypothetical protein; Provisional

Probab=97.26  E-value=0.00019  Score=82.59  Aligned_cols=36  Identities=36%  Similarity=0.500  Sum_probs=33.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..+||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence            35799999999999999999999  9999999999753

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.26  E-value=0.00014  Score=86.19  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=41.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||+|||+|++||++|+++++  .|.+|+||||..+..++|..+.|.+.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g~s~~a~Ggi~   97 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRSHTVAAQGGIN   97 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCCchHHhhcCce
Confidence            35799999999999999999999  89999999999876666666654443

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.26  E-value=0.00014  Score=80.04  Aligned_cols=33  Identities=30%  Similarity=0.597  Sum_probs=31.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ||+|||||++|+++|+.|++  .|++|+|+||...
T Consensus         1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCc
Confidence            79999999999999999999  8999999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.26  E-value=2.9e-05  Score=87.80  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=28.3

Q ss_pred             EeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        255 ILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       255 VIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |||+|++|+++|+++++  .|.+|+||||...
T Consensus         1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence            79999999999999999  8999999999764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK06126 hypothetical protein; Provisional

Probab=97.26  E-value=0.00017  Score=84.04  Aligned_cols=37  Identities=35%  Similarity=0.489  Sum_probs=33.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+..+||+|||||++||++|+.|++  .|++|+|||+..
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~   40 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGR--RGVDSILVERKD   40 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            3457899999999999999999999  999999999874

>PRK13059 putative lipid kinase; Reviewed

Probab=97.25  E-value=0.00039  Score=74.84  Aligned_cols=68  Identities=13%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             cchhHhHHHHHhhcCCCcccccCc-eeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPG-VEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~-v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      +.++++++.+|..+-+|+|...+. |+|++++.++|++..+ =.+.+|||.++..|++.+|.|+..+.++
T Consensus       223 ~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~~~-~~~~~DGE~~~~~p~~i~v~p~al~v~~  291 (295)
T PRK13059        223 ACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESNEE-IVTDIDGERGPDFPLNIECIKGGLKVLG  291 (295)
T ss_pred             CCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeCCC-ceEEeCCCcCCCCcEEEEEecCeeEEEe
Confidence            578999999999999999999999 9999999999998543 4788999999999999999999996666

>PRK07233 hypothetical protein; Provisional

Probab=97.24  E-value=0.00018  Score=80.63  Aligned_cols=33  Identities=39%  Similarity=0.613  Sum_probs=30.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +|+|||||++||++|++|++  .|++|+|+|+..-
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~   33 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQ   33 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCC
Confidence            58999999999999999999  8999999999763

>KOG0029|consensus

Probab=97.24  E-value=0.0002  Score=82.45  Aligned_cols=38  Identities=39%  Similarity=0.528  Sum_probs=33.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-cc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g  287 (728)
                      ..+.+|+|||||++|||+|.+|.+  .|++|+|+|... +|
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVG   51 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcC
Confidence            456799999999999999999999  899999999854 44

>PRK06370 mercuric reductase; Validated

Probab=97.23  E-value=0.00022  Score=81.44  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=36.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT  289 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~g  289 (728)
                      |+.++||+|||||..|+++|+.|++  .|++|+|||+...+.+
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~GG~   42 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLLGGT   42 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCccCCc
Confidence            5667999999999999999999999  8999999999765543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.23  E-value=0.00019  Score=81.01  Aligned_cols=32  Identities=44%  Similarity=0.703  Sum_probs=29.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~  285 (728)
                      +|+|||||++||++|+.|++  .|  ++|+|+|+..
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~--~G~~~~V~vlEa~~   35 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHK--KGPDADITLLEASD   35 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHH--hCCCCCEEEEEcCC
Confidence            69999999999999999999  66  8999999964

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.22  E-value=0.0002  Score=74.72  Aligned_cols=32  Identities=41%  Similarity=0.610  Sum_probs=30.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||+||+|+++|+.|++  .|.+|+|+||+.
T Consensus         3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~   34 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGR   34 (331)
T ss_pred             cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCC
Confidence            69999999999999999999  999999999975

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00021  Score=80.84  Aligned_cols=33  Identities=42%  Similarity=0.615  Sum_probs=31.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +|+|+|||++||+|||+|++  +|++|||+|++..
T Consensus         2 rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~   34 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDR   34 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHh--CCCceEEEeccCc
Confidence            69999999999999999999  9999999999763

>PLN02985 squalene monooxygenase

Probab=97.21  E-value=0.00022  Score=82.72  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=34.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....+||+|||||++|+++|+.|++  .|++|+|+||..
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~   76 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL   76 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence            4567899999999999999999999  899999999974

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.21  E-value=0.00021  Score=81.25  Aligned_cols=35  Identities=31%  Similarity=0.592  Sum_probs=30.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCC--CCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~--G~~VtVIEk~~  285 (728)
                      .||+|||||++||++||+|++..+  |++|+|+|+..
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~   39 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD   39 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence            589999999999999999999212  99999999965

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.20  E-value=0.00017  Score=85.82  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=39.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG  296 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG  296 (728)
                      ..+||+|||||++||++|+++++  .|.+|+||||..+..++|..+.|
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s~s~~a~G   49 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRSHSAAAQG   49 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCcchHHHhh
Confidence            46899999999999999999999  89999999998776555555433

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.19  E-value=0.00022  Score=80.89  Aligned_cols=35  Identities=23%  Similarity=0.367  Sum_probs=32.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|||+|||||.+|+++|+.|++  .|++|+|||++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCC
Confidence            46899999999999999999999  899999999974

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.19  E-value=0.00022  Score=83.54  Aligned_cols=43  Identities=30%  Similarity=0.537  Sum_probs=37.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG  296 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG  296 (728)
                      ||+|||+|++|+++|+.+++  .|.+|+||||.....++|..++|
T Consensus         1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~g~s~~a~G   43 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTRSHTVAAQG   43 (566)
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCcchhhcc
Confidence            79999999999999999999  89999999998765555555543

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06184 hypothetical protein; Provisional

Probab=97.18  E-value=0.00026  Score=81.66  Aligned_cols=35  Identities=34%  Similarity=0.503  Sum_probs=32.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||++||++|+.|++  .|++|+||||..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~   36 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAP   36 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            46799999999999999999999  999999999975

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.17  E-value=0.00024  Score=79.06  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCC--CCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~--G~~VtVIEk~~  285 (728)
                      .+||+|||||++||++|+.|++  .  |++|+|||+..
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~--~g~g~~v~liE~~~   36 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQ--AAPHLPVTVVDAAP   36 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhc--CCCCCEEEEEeCCC
Confidence            3699999999999999999999  6  59999999975

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.17  E-value=0.00025  Score=83.41  Aligned_cols=51  Identities=27%  Similarity=0.397  Sum_probs=41.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||+|||||++||++|+.+++..+|.+|+||||..+..++|..++|.+.
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~   53 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSA   53 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhh
Confidence            357999999999999999999983236899999999776667766655443

>PLN02268 probable polyamine oxidase

Probab=97.16  E-value=0.00024  Score=80.24  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=30.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||++||++|++|.+  .|++|+|+|+..
T Consensus         2 ~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~   33 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHD--ASFKVTLLESRD   33 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCC
Confidence            79999999999999999999  899999999864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.16  E-value=0.00021  Score=78.96  Aligned_cols=33  Identities=36%  Similarity=0.597  Sum_probs=31.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCC-CcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~  286 (728)
                      ||+|||||++|+++|+.|++  .| ++|+|+|+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCc
Confidence            79999999999999999999  99 99999999854

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK11445 putative oxidoreductase; Provisional

Probab=97.15  E-value=0.0003  Score=77.39  Aligned_cols=32  Identities=34%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++|+++|+.|++  . ++|+|||+..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCC
Confidence            699999999999999999999  8 9999999975

>PRK12839 hypothetical protein; Provisional

Probab=97.15  E-value=0.00032  Score=82.31  Aligned_cols=52  Identities=23%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc-cccC
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LFEP  300 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG-ii~p  300 (728)
                      +..++||+|||+|++|+++|+.|++  .|.+|+||||.....+++..++| ++.+
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~~~~~   57 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGATAWSGGWMWTP   57 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccccCCeeecC
Confidence            3457899999999999999999999  89999999998766666666654 4444

>PRK08244 hypothetical protein; Provisional

Probab=97.15  E-value=0.00028  Score=81.21  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++||+|||||++||++|+.|++  .|++|+||||..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~   35 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLK   35 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            4799999999999999999999  999999999975

>PLN02815 L-aspartate oxidase

Probab=97.15  E-value=0.00023  Score=83.74  Aligned_cols=48  Identities=25%  Similarity=0.373  Sum_probs=40.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      ..++||+|||+|++||++|+.+++  .| +|+||||.....++|..++|.+
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~s~~a~Ggi   74 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESNTNYAQGGV   74 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCcHHHhhccc
Confidence            346899999999999999999999  88 9999999987777777665543

>PRK06753 hypothetical protein; Provisional

Probab=97.14  E-value=0.00026  Score=78.03  Aligned_cols=33  Identities=42%  Similarity=0.572  Sum_probs=31.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ||+|||||++||++|+.|++  .|++|+|+|+...
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence            79999999999999999999  8999999999863

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.13  E-value=0.00033  Score=79.86  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=33.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ++..|||+|||||.+|+++|++|++  .|++|+|||++
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~   37 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERY   37 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHh--CCCEEEEEecc
Confidence            3457999999999999999999999  89999999996

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.13  E-value=0.00031  Score=82.64  Aligned_cols=50  Identities=30%  Similarity=0.484  Sum_probs=41.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ++||+|||+|++||++|+.+++..+|.+|+||||.....++|..++|.+.
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~   52 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSA   52 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchh
Confidence            57999999999999999999983246899999999876667766655543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.13  E-value=0.00021  Score=81.05  Aligned_cols=49  Identities=24%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ..++||+|||+|.+||++|+.+ .  .|.+|+||||.....++|..++|.+.
T Consensus         2 ~~~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg~s~~a~ggi~   50 (433)
T PRK06175          2 NLYADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNECNTYLAQGGIS   50 (433)
T ss_pred             CccccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCCchHHHhHhhe
Confidence            3568999999999999999997 4  58999999998776666666655443

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.13  E-value=0.00024  Score=78.71  Aligned_cols=33  Identities=30%  Similarity=0.504  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++|+++|+.|++  .|++|+|+|+..
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCCC
Confidence            589999999999999999999  899999999874

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.13  E-value=0.00042  Score=81.25  Aligned_cols=50  Identities=16%  Similarity=0.404  Sum_probs=42.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc-cccC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LFEP  300 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG-ii~p  300 (728)
                      ..++||||||+| +|+++|+.+++  .|.+|+||||.....|+|..++| +|.+
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~~~~gG~~~~~   64 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGSTARSGGAFWLP   64 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcccCcCCCEecC
Confidence            458999999999 89999999999  89999999998666677777754 4444

>PRK13337 putative lipid kinase; Reviewed

Probab=97.12  E-value=0.00061  Score=73.64  Aligned_cols=73  Identities=19%  Similarity=0.125  Sum_probs=64.2

Q ss_pred             cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccccccC
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEYL   79 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~~~~~   79 (728)
                      +.++++++.+|..+-.|+|...|.|+|++++.++|++..+ =.+.||||.+...|+..+|+|.-.+.++.++..
T Consensus       225 ~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~-~~~~iDGE~~~~~p~~i~v~p~al~v~~p~~~~  297 (304)
T PRK13337        225 KANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSFDK-MQLNLDGEYGGKLPAEFENLYRHIEVFVPKDQE  297 (304)
T ss_pred             CCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcCCC-CeEEeCCCcCCCCCEEEEEecceEEEEeccccc
Confidence            4688999999999999999999999999999999998654 477899999999999999999999777755443

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.11  E-value=0.0003  Score=81.92  Aligned_cols=48  Identities=29%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||+|||+|++||++|+++++  . .+|+||||.....++|..++|.+.
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~t~~a~Ggi~   54 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGSTFYAQGGIA   54 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCChhhccCCee
Confidence            46799999999999999999998  5 799999998876677777765443

>PLN02661 Putative thiazole synthesis

Probab=97.10  E-value=0.00033  Score=76.86  Aligned_cols=37  Identities=41%  Similarity=0.688  Sum_probs=32.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .++||+|||||++|+++||+|++. +|++|+|||+...
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~  127 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVS  127 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcc
Confidence            467999999999999999999972 4899999999753

>PRK07588 hypothetical protein; Provisional

Probab=97.09  E-value=0.00029  Score=78.36  Aligned_cols=32  Identities=44%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ||+|||||++||++|+.|++  .|++|+|+|+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~   33 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR--YGHEPTLIERAP   33 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH--CCCceEEEeCCC
Confidence            89999999999999999999  899999999974

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.08  E-value=0.00031  Score=82.09  Aligned_cols=48  Identities=31%  Similarity=0.358  Sum_probs=39.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      ..++||+|||+|++|+++|++++   .|.+|+||||.....++|..++|.+
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~---~G~~V~lieK~~~~gg~s~~a~Ggi   54 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP---SHLRVGLITKDTLKTSASDWAQGGI   54 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh---cCCCEEEEEccCCCCCchhhhcccc
Confidence            45789999999999999999985   4889999999887666776664433

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.08  E-value=0.00034  Score=74.08  Aligned_cols=34  Identities=32%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +||+|||||.+|+++|+.|++  .|++|+|||+..+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~   34 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEP   34 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCC
Confidence            589999999999999999999  8999999998753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.08  E-value=0.00035  Score=80.36  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=32.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMD  288 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~  288 (728)
                      .||+|||||+.||++|..|++  .|++|+|+|++. +|.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCC
Confidence            489999999999999999999  999999999985 443

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.08  E-value=0.00037  Score=78.77  Aligned_cols=33  Identities=45%  Similarity=0.743  Sum_probs=29.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .|+||||||+||++||+|++..+..+|+|+|++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~   34 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD   34 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            699999999999999999994444999999996

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.07  E-value=0.00035  Score=80.91  Aligned_cols=47  Identities=32%  Similarity=0.434  Sum_probs=39.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ++||+|||+|++||++|+++++   |.+|+||||.....++|..++|.+.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s~~a~Ggi~   49 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNSHLAQGGIA   49 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCchhcCccce
Confidence            6799999999999999999965   6899999999877777766655443

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.04  E-value=0.00031  Score=83.53  Aligned_cols=48  Identities=25%  Similarity=0.308  Sum_probs=38.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCcc-ccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAA-GLF  298 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~ag-Gii  298 (728)
                      .++||+|||+|++||++|+++++  .|.+|+||||.. ++.++|..+. |+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~~g~s~~a~GGi~   83 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPRRAHSIAAQGGIN   83 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhchH
Confidence            46799999999999999999999  899999999854 4445555554 443

>PRK07538 hypothetical protein; Provisional

Probab=97.04  E-value=0.00034  Score=78.51  Aligned_cols=33  Identities=39%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++||++|+.|++  .|++|+|+|+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~   33 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAP   33 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCC
Confidence            389999999999999999999  899999999975

>PRK06116 glutathione reductase; Validated

Probab=97.04  E-value=0.00036  Score=79.32  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=34.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +.+|||+|||||..|+++|+.|++  .|++|+|||++..|
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~~~G   39 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAM--YGAKVALIEAKRLG   39 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccchh
Confidence            346899999999999999999999  89999999997544

>PRK05868 hypothetical protein; Validated

Probab=97.01  E-value=0.0004  Score=77.11  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .||+|||||++||++|+.|++  .|++|+|+|+..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~   34 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHP   34 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCC
Confidence            389999999999999999999  999999999974

>PLN02568 polyamine oxidase

Probab=97.01  E-value=0.00044  Score=80.56  Aligned_cols=38  Identities=26%  Similarity=0.504  Sum_probs=33.3

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCC-----CcEEEeeccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPN-----CDVTVIADKF  285 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G-----~~VtVIEk~~  285 (728)
                      ||++..||+|||||++||++|++|++  .|     ++|+|+|+..
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~--~g~~~~~~~v~v~E~~~   43 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYT--SSAANDMFELTVVEGGD   43 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHh--cccccCCceEEEEeCCC
Confidence            35566899999999999999999998  55     8999999965

>KOG2614|consensus

Probab=97.00  E-value=0.0005  Score=75.70  Aligned_cols=37  Identities=43%  Similarity=0.679  Sum_probs=33.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      +.+|+||||||+||++|..|.+  .|++|+|+|+.....
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESREDPR   38 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeeccccc
Confidence            3479999999999999999999  999999999965443

>TIGR02734 crtI_fam phytoene desaturase

Probab=96.99  E-value=0.00036  Score=80.36  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=30.1

Q ss_pred             EEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |||||||+.||++|..|++  .|++|+|+|++..
T Consensus         1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~   32 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDK   32 (502)
T ss_pred             CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCC
Confidence            6899999999999999999  9999999999764

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PTZ00367 squalene epoxidase; Provisional

Probab=96.98  E-value=0.00045  Score=80.85  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||++|+++|+.|++  .|++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence            46899999999999999999999  899999999975

>PRK07190 hypothetical protein; Provisional

Probab=96.98  E-value=0.00053  Score=78.97  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||.+||++|+.|++  .|.+|+||||..
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~   38 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSD   38 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCC
Confidence            346899999999999999999999  899999999985

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.97  E-value=0.00054  Score=78.32  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=34.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      .++||+|||||..|+++|..|++  .|.+|+|||++..+.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~~~GG   40 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKKYWGG   40 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence            46899999999999999999999  899999999975543

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.97  E-value=0.00047  Score=80.47  Aligned_cols=47  Identities=21%  Similarity=0.271  Sum_probs=38.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc-cccCCCCccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLF  298 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~-g~gAS~~agGii  298 (728)
                      .++||+|||+|++||++|+.+ +  .|.+|+||||... .+++|..++|.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~s~~a~gg~   53 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGCTVMAEGGY   53 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCccccccCceE
Confidence            357999999999999999999 8  8999999999865 345565555544

>PRK13057 putative lipid kinase; Reviewed

Probab=96.96  E-value=0.0012  Score=70.67  Aligned_cols=68  Identities=22%  Similarity=0.348  Sum_probs=61.3

Q ss_pred             cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      ..++++++.+|..+-+|.|...++|++.+++.++|+...+ =.+.||||.+...|++.+|.|+..+.++
T Consensus       216 ~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~-~~~~~DGE~~~~~p~~i~v~p~al~v~~  283 (287)
T PRK13057        216 VAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTRKP-RPINTDGELTTYTPAHFRVLPKALRVLA  283 (287)
T ss_pred             CCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeCCC-cEEeeCCccCCCCCEEEEEECCeEEEEc
Confidence            5688999999999999999999999999999999998654 4689999999999999999999996655

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.96  E-value=0.00053  Score=80.99  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=36.0

Q ss_pred             eEEEeecceechhhHHHhh----hhCCCCcEEEeecccccccCCCCcccc
Q psy16975        252 KVAILGAGIIGLSTALELQ----RRFPNCDVTVIADKFNMDTTSDGAAGL  297 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La----~~~~G~~VtVIEk~~~g~gAS~~agGi  297 (728)
                      ||+|||||++||++|+.++    +  .|.+|+||||......+| .++|+
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~~~s~s-~A~G~   47 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANLERSGA-VAQGL   47 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCCCCCCc-ccccc
Confidence            7999999999999999998    5  799999999987654444 56564

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.95  E-value=0.00053  Score=80.23  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ...|||+|||||.+|+++|++|++  +|++|+|||++..+
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~~G   39 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDDFG   39 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC
Confidence            346899999999999999999999  89999999997543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family

Probab=96.94  E-value=0.0011  Score=71.14  Aligned_cols=67  Identities=16%  Similarity=0.185  Sum_probs=60.0

Q ss_pred             cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccc
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERT   73 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~   73 (728)
                      ..++++++.++..+-.|.|...|.|++.+++.++|+...+ -.+.||||.+...|++.+|+|+..+.+
T Consensus       226 ~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~-~~~~iDGE~~~~~p~~i~v~p~al~~~  292 (293)
T TIGR00147       226 NDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQTPHK-ITFNLDGEPLGGTPFHIEILPAHLRCR  292 (293)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEcCCC-cEEEeCCCcCCCCcEEEEEEhhccEEe
Confidence            4689999999999999999999999999999999997653 578999999999999999999987544

The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.93  E-value=0.00055  Score=79.91  Aligned_cols=52  Identities=19%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCc-cccccC
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP  300 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~a-gGii~p  300 (728)
                      +..++||+|||||.+||.+|+.+++  .|.+|+|+||..+..++|..+ +|++..
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~rg~t~~a~gG~~a~   55 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKRGHTVAAQGGINAA   55 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCCCchhhhccccccc
Confidence            4567899999999999999999999  899999999988766776655 444444

>PRK13055 putative lipid kinase; Reviewed

Probab=96.93  E-value=0.0011  Score=72.64  Aligned_cols=69  Identities=20%  Similarity=0.257  Sum_probs=61.8

Q ss_pred             cchhHhHHHHHhhcCC-CcccccCceeeEEcceeEEeecCC-CcEEEEcceEeeecccceeeccccccccc
Q psy16975          6 HFGVWLIEEFLIGLAS-GSHIKVPGVEMIPVEAFRLVPHSS-GSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~-g~h~~~~~v~~~~v~a~rl~p~~~-~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      +.++++++.+|..+-+ |.|...++|+|.+++.++|++..+ .-.+.+|||.+...|++.+|+|+..+.++
T Consensus       229 ~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~~~~~~~~iDGE~~~~~pv~i~v~p~al~v~~  299 (334)
T PRK13055        229 TANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPLGDDRLMVNLDGEYGGDAPMTFENLKQHIEFFA  299 (334)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeCCCCcceEeeCCCcCCCCcEEEEEEcCeEEEEe
Confidence            4688999999999999 999999999999999999998653 35789999999999999999999996666

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=96.92  E-value=0.00057  Score=76.07  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++|+++|+.|++  .|.+|+|||+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~   34 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRN   34 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            599999999999999999998  899999999864

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.90  E-value=0.00056  Score=76.66  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||.+|+++|+.|++  .|++|+|||+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            489999999999999999999  999999999975

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.90  E-value=0.00058  Score=76.69  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .||+|||||.+|+.+|+.|++  +|++|+|+|+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccC
Confidence            589999999999999999999  999999999865

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.90  E-value=0.00033  Score=81.79  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +||+|||||.+|+.+|+.+++  .|.+|+|+|++
T Consensus         1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~   32 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLN   32 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHH--CCCCEEEEecc
Confidence            699999999999999999999  89999999986

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=96.90  E-value=0.00058  Score=79.66  Aligned_cols=36  Identities=31%  Similarity=0.567  Sum_probs=33.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||++||++|+.|++  .|++|+||||..
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~   56 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDD   56 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            356799999999999999999999  899999999985

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=96.90  E-value=0.0005  Score=76.26  Aligned_cols=32  Identities=41%  Similarity=0.646  Sum_probs=30.4

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ||+|||||++|+++|++|++  .|++|+|||+..
T Consensus         1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCC
Confidence            79999999999999999999  899999999974

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK00861 putative lipid kinase; Reviewed

Probab=96.90  E-value=0.0014  Score=70.56  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             cchhHhHHH----HHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          6 HFGVWLIEE----FLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         6 ~~~r~~~l~----~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      ..|+++++.    +|..+-+|+|.+.++|+|++++.++|+... .-.+.+|||.++..|++.+|+|+..+.++
T Consensus       224 ~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~~-~~~~~~DGE~~~~~p~~i~v~p~al~v~~  295 (300)
T PRK00861        224 PKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITTDP-PQKVVIDGEVVGTTPIEIECLPRSLKVFA  295 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEeCC-CeEEEECCccCCCceEEEEEECCEEEEEe
Confidence            357788774    566677899999999999999999999765 35789999999999999999999996654

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.89  E-value=0.00058  Score=76.35  Aligned_cols=33  Identities=42%  Similarity=0.523  Sum_probs=31.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||++||++|+.|++  +|++|+|+|+..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            479999999999999999999  999999999974

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.89  E-value=0.00068  Score=79.78  Aligned_cols=49  Identities=22%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL  297 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGi  297 (728)
                      ...++||+|||+|++|+++|+.+++  .|.+|+||||.....++|..++|+
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~   57 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTTAWSGGW   57 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccccccCce
Confidence            3457899999999999999999999  899999999987666777777665

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.89  E-value=0.00063  Score=77.91  Aligned_cols=39  Identities=15%  Similarity=0.196  Sum_probs=34.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      |...|||+|||||..|+++|+.|++  .|.+|+|||++.+|
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G   39 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGKLG   39 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC
Confidence            3457999999999999999999999  99999999997543

>PRK06996 hypothetical protein; Provisional

Probab=96.89  E-value=0.0006  Score=76.22  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=33.8

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCC----CcEEEeecccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFN  286 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G----~~VtVIEk~~~  286 (728)
                      |..+.+||+|||||++|+++|+.|++  .|    ++|+|+|+...
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~--~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLAR--RSATRALSIALIDAREP   49 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhc--CCCcCCceEEEecCCCC
Confidence            45567899999999999999999999  65    57999999753

>PRK11914 diacylglycerol kinase; Reviewed

Probab=96.89  E-value=0.0013  Score=71.18  Aligned_cols=67  Identities=12%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      ..++++++.+|..+-+|+|++.|.|+|++++.++|+.. + =.+.+|||.+...|++.+|+|+..+.++
T Consensus       236 ~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~~-~-~~~~~DGE~~~~~p~~i~v~p~al~v~v  302 (306)
T PRK11914        236 SASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVECP-G-INAYADGDFACPLPAEISAVPGALQILR  302 (306)
T ss_pred             cCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEcC-C-cceecCCCcCCCCceEEEEEcCeEEEEC
Confidence            36789999999999999999999999999999999964 2 2578999999988999999999996665

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=96.87  E-value=0.00053  Score=77.72  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhC--CCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~  285 (728)
                      +||+|||||++|+++|+.|++..  .|++|+|||+..
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            58999999999999999999721  489999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=96.86  E-value=0.00063  Score=77.55  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=29.3

Q ss_pred             eEEEeecceechhhHHHhhhhC----CCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRF----PNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~----~G~~VtVIEk~~  285 (728)
                      +|+|||||++||++||+|++..    .|++|+|+|+..
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~   40 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEE   40 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence            6999999999999999999831    248999999964

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.86  E-value=0.00066  Score=77.30  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      .|||+|||||.+|+++|++|++  .|.+|+|||++.+|.
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~~~~GG   37 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEKEYLGG   37 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence            3799999999999999999999  899999999955443

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PLN02463 lycopene beta cyclase

Probab=96.84  E-value=0.00067  Score=77.25  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|++|++  .|++|+|||+..
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~   61 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSP   61 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCc
Confidence            46899999999999999999999  899999999864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.83  E-value=0.00074  Score=76.96  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .+|||+|||||.+|+++|..|++  .|.+|+|||++..+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~G   38 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAK--LGKKVALIEKGPLG   38 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCccc
Confidence            46899999999999999999999  89999999995443

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.83  E-value=0.00071  Score=77.13  Aligned_cols=36  Identities=14%  Similarity=0.180  Sum_probs=33.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +|||+|||||..|+++|+.|++  .|++|+|+|++..|
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~G   37 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAKKLG   37 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecccccc
Confidence            5899999999999999999999  99999999997544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=96.83  E-value=0.00059  Score=76.77  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=26.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |||+|||||.+|+.+|+.|++  .|.+|+|+||..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~   33 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNK   33 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCc
Confidence            699999999999999999999  999999999975

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.81  E-value=0.00076  Score=76.70  Aligned_cols=36  Identities=17%  Similarity=0.188  Sum_probs=33.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +|||+|||||..|+++|+.+++  .|++|+|+|++.+|
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~G   37 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEPRVG   37 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCccC
Confidence            5899999999999999999999  99999999997544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.80  E-value=0.00073  Score=80.13  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+..+|+|||||++||++|+.|++  .|++|+|+||+.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence            456789999999999999999999  899999999974

>KOG2960|consensus

Probab=96.80  E-value=0.00055  Score=68.96  Aligned_cols=50  Identities=26%  Similarity=0.371  Sum_probs=39.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ..||+|||||-+|||+||+++++.+..+|.|||..-.+.|.+ |-||.+..
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa-WLGGQLFS  125 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA-WLGGQLFS  125 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc-cccchhhh
Confidence            459999999999999999999766899999999986544433 44444433

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.80  E-value=0.00078  Score=76.36  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=32.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|||+|||||.+|+++|..|++  .|++|+|||++.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCC
Confidence            36899999999999999999999  899999999974

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.79  E-value=0.0008  Score=79.59  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCC--CCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~--G~~VtVIEk~~~g  287 (728)
                      .++||+|||||++||++|+++++  .  |.+|+||||....
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae--~~~G~~V~lieK~~~~   48 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKE--WAPDLKVLIVEKANIK   48 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCCcC
Confidence            35799999999999999999999  6  9999999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.78  E-value=0.00087  Score=76.68  Aligned_cols=36  Identities=36%  Similarity=0.492  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....+|+|||||.+||++|.+|++  .|++|+|+|+..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~   43 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREK   43 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCC
Confidence            446799999999999999999999  899999999974

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=96.78  E-value=0.0008  Score=78.37  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=33.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||++||++|+.|++  .|++|+||||..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~   43 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWP   43 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            456899999999999999999999  899999999985

>TIGR02731 phytoene_desat phytoene desaturase

Probab=96.77  E-value=0.00083  Score=76.32  Aligned_cols=32  Identities=38%  Similarity=0.453  Sum_probs=30.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||++||++|++|++  .|++|+|+|+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~   32 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARD   32 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            48999999999999999999  999999999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.76  E-value=0.00096  Score=79.32  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCC-CCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~  285 (728)
                      |+.++||+|||||++||++|+.|++  . |.+|+|||+..
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~   66 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKP   66 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCC
Confidence            4567899999999999999999999  6 99999999974

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=96.75  E-value=0.001  Score=75.73  Aligned_cols=38  Identities=16%  Similarity=0.069  Sum_probs=35.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |+..+||+|||+|+.||.+|..|++  .|.+|.++|++..
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~   38 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPY   38 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCC
Confidence            4568999999999999999999999  9999999999753

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.73  E-value=0.0012  Score=76.56  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhC--CCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~~g  287 (728)
                      ...+|+|||||++|||+|++|++..  +|.+|+|+|+....
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~   61 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP   61 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence            3578999999999999999999942  57899999998643

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.71  E-value=0.001  Score=84.24  Aligned_cols=49  Identities=20%  Similarity=0.321  Sum_probs=41.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      ...+||||||+|.+|+++|+++++  .|.+|+||||.....++|..++|.+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~~s~ggi  455 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSAKATSGI  455 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchhhccccc
Confidence            346899999999999999999999  8999999999876667776555443

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.70  E-value=0.00084  Score=74.65  Aligned_cols=32  Identities=47%  Similarity=0.573  Sum_probs=29.8

Q ss_pred             eEEEeecceechhhHHHh--hhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALEL--QRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~L--a~~~~G~~VtVIEk~~  285 (728)
                      ||+|||||.+|+++|++|  ++  +|.+|+|||+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~--~g~~Vllid~~~   34 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR--PGLSVLLIDPKP   34 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC--CCCEEEEEcCCc
Confidence            899999999999999999  66  899999999975

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02697 lycopene epsilon cyclase

Probab=96.70  E-value=0.00098  Score=77.38  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|+.|++  .|++|+|||+..
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~  141 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDL  141 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcc
Confidence            46899999999999999999999  899999999863

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.68  E-value=0.001  Score=70.95  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=28.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      ||+||||+|..|+.+|..|++  .+ .+|+|||++.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~--~~~~~VlvlEaG~   34 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSE--AGNKKVLVLEAGP   34 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTT--STTS-EEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHhh--CCCCcEEEEEccc
Confidence            699999999999999999999  55 7999999975

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.67  E-value=0.0011  Score=74.77  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=32.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++||+|||+|++|+++|+.|++  .|.+|+|||++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence            5899999999999999999999  899999999974

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.66  E-value=0.0013  Score=77.36  Aligned_cols=48  Identities=25%  Similarity=0.326  Sum_probs=41.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      .++||+|||+|.+|+++|+.+++  .|.+|+||||.....++|..++|.+
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~s~g~~   62 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTATSAGTT   62 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccccCcee
Confidence            46799999999999999999999  8999999999876667776666543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.63  E-value=0.0011  Score=74.31  Aligned_cols=32  Identities=34%  Similarity=0.565  Sum_probs=29.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      +|+|||||++||++|+.|++  .| .+|+|+||..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~   34 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAP   34 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCC
Confidence            69999999999999999999  77 5999999974

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=96.62  E-value=0.0013  Score=74.61  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=27.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ||||||||.+|+++|+.+++  .|.+|+|||+...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~   33 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGF   33 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSS
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCEEEEEECCcc
Confidence            89999999999999999999  9999999999753

>KOG1276|consensus

Probab=96.61  E-value=0.0015  Score=72.20  Aligned_cols=38  Identities=34%  Similarity=0.448  Sum_probs=31.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+.++|+|+||||.||++||+|++.++...|+|+|++.
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~   46 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP   46 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence            34568999999999999999999955555677799863

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0014  Score=71.03  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCc-EEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~~g  287 (728)
                      +.+||+|||||.+||++|.++++  .+++ ++|+|+..++
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~g   39 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPG   39 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcC
Confidence            46899999999999999999999  9988 6667666555

>PRK14694 putative mercuric reductase; Provisional

Probab=96.61  E-value=0.0014  Score=74.95  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=34.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ...+||+|||||..|+++|..|++  .|.+|+|||++.+|
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~~~G   41 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATE--RGARVTLIERGTIG   41 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEccccc
Confidence            357899999999999999999999  89999999997654

>KOG1399|consensus

Probab=96.58  E-value=0.0015  Score=74.12  Aligned_cols=36  Identities=36%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++..+|+|||||.+||++|.+|.+  .|++|+|+||..
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~   39 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTD   39 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHH--CCCCceEEEecC
Confidence            456799999999999999999999  899999999964

>PRK08275 putative oxidoreductase; Provisional

Probab=96.57  E-value=0.0013  Score=77.07  Aligned_cols=39  Identities=18%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ..+||+|||+|++|+++|+++++..+|.+|+||||....
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            457999999999999999999983237899999998753

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.57  E-value=0.0014  Score=75.34  Aligned_cols=32  Identities=47%  Similarity=0.688  Sum_probs=30.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||++||++|++|++  .|++|+|+|+..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~   32 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRS   32 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence            48999999999999999999  899999999975

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.55  E-value=0.0017  Score=69.59  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +++||+|||||++|+++|+.|++  .|.++.||-++.
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~gQ   35 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRGQ   35 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence            46899999999999999999999  999999999875

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.55  E-value=0.0019  Score=74.08  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=32.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +.+|||+|||||..|+++|..|++  .|++|+|||+.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~   36 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERY   36 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence            457999999999999999999999  89999999986

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.55  E-value=0.0013  Score=73.92  Aligned_cols=46  Identities=33%  Similarity=0.406  Sum_probs=40.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ||+|||+|++||++|+.|++  . ++|+||-|...+.++|.++-|-+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~--~-~~V~vltk~~~~~~sS~~AQGGIAa   54 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP--S-FRVTVLTKGPLGESSSYWAQGGIAA   54 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC--C-CcEEEEeCCCCCCccchhhcCceEe
Confidence            89999999999999999998  4 8999999998888888888655544

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=96.55  E-value=0.0015  Score=76.53  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +..+||+|||||.+|+.+|+.+++  .|.+|+|||++
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~   36 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHN   36 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHH--cCCcEEEEecc
Confidence            356999999999999999999999  99999999986

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.53  E-value=0.0017  Score=74.19  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..|||+|||||.+|+++|+.|++  .|++|+|+|++..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~~   38 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEKL   38 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEecccc
Confidence            46899999999999999999999  8999999999764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.53  E-value=0.0016  Score=72.43  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=30.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ||+|||||++|+++|+.|++..+|++|+|+|+..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            7999999999999999999832499999999975

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK02106 choline dehydrogenase; Validated

Probab=96.50  E-value=0.0016  Score=76.34  Aligned_cols=38  Identities=24%  Similarity=0.276  Sum_probs=34.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |...+|+||||+|.+|+.+|..|++. +|++|+|||++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~   39 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG   39 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence            45679999999999999999999995 699999999984

>PTZ00058 glutathione reductase; Provisional

Probab=96.49  E-value=0.0022  Score=75.11  Aligned_cols=39  Identities=15%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      ..+|||+|||||..|.++|+.+++  .|.+|+|||++..|.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~~~GG   84 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKDYLGG   84 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHH--cCCeEEEEecccccc
Confidence            357899999999999999999999  899999999985443

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.48  E-value=0.0018  Score=64.54  Aligned_cols=31  Identities=48%  Similarity=0.772  Sum_probs=29.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ||+|||||.+|+++|++|++  .+.+|+|+|+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~   31 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKS   31 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEESSS
T ss_pred             CEEEEecHHHHHHHHHHHhc--CCCeEEEEecc
Confidence            79999999999999999998  99999999765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.48  E-value=0.0014  Score=77.42  Aligned_cols=42  Identities=24%  Similarity=0.262  Sum_probs=35.7

Q ss_pred             EEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccc
Q psy16975        253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAG  296 (728)
Q Consensus       253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agG  296 (728)
                      |+|||+|++||++|+++++  .|.+|+||||.. ++.++|..+.|
T Consensus         1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~~g~s~~a~G   43 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPRRAHSIAAQG   43 (603)
T ss_pred             CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCCCccchhhhh
Confidence            6899999999999999999  899999999987 55555655543

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02053 MerA mercuric reductase

Probab=96.47  E-value=0.0018  Score=73.99  Aligned_cols=36  Identities=14%  Similarity=0.238  Sum_probs=32.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      |||+|||||..|+++|..|++  .|.+|+|||++..+.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~~GG   36 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGPLGG   36 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCcccC
Confidence            699999999999999999999  999999999976443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK10262 thioredoxin reductase; Provisional

Probab=96.45  E-value=0.002  Score=69.75  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ...+||+|||||.+|+++|+.|++  .|++|+|||+...
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~~~   40 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEK   40 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEeecC
Confidence            356799999999999999999999  8999999997543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.44  E-value=0.0024  Score=68.94  Aligned_cols=34  Identities=41%  Similarity=0.618  Sum_probs=30.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||+||+|||+||.|++   -++||++|.+.
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~   40 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADR   40 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc---ccceEEEeccc
Confidence            35689999999999999999998   36999999975

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.44  E-value=0.0018  Score=73.08  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ||+|||||.+|+.+|+.|++  .|++|+|+|+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp   33 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRP   33 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccc
Confidence            79999999999999999999  999999999864

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.42  E-value=0.0024  Score=73.30  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=32.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      ...||++|||||.+|+++|+.|++  .|.+|+|||+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~   35 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEA   35 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHh--CCCeEEEEec
Confidence            346899999999999999999999  8999999998

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.41  E-value=0.002  Score=64.39  Aligned_cols=30  Identities=37%  Similarity=0.495  Sum_probs=24.4

Q ss_pred             EEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975        254 AILGAGIIGLSTALELQRRFPNCD-VTVIADKF  285 (728)
Q Consensus       254 vVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~  285 (728)
                      +|||||.+||++|++|.+  .|.+ |+|||++.
T Consensus         1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~   31 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERND   31 (203)
T ss_dssp             EEE--SHHHHHHHHHHHH--TT---EEEEESSS
T ss_pred             CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCC
Confidence            699999999999999999  8999 99999974

...

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=96.41  E-value=0.0021  Score=71.74  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=33.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....||+|||||.+||++||+|.+  .|++|+|+|...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~   40 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARD   40 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccC
Confidence            456799999999999999999999  999999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=96.39  E-value=0.0026  Score=72.92  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=32.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....||+|||||.+|+++|++|++  .|++|+|+|+..
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~  173 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALH  173 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            346799999999999999999999  899999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.38  E-value=0.0025  Score=73.06  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=32.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeec-cccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk-~~~g  287 (728)
                      ++|||+|||||-.|+++|..+++  .|.+|+|||+ +.+|
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~G   39 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLG   39 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCcee
Confidence            35899999999999999999999  9999999997 4443

>PLN02676 polyamine oxidase

Probab=96.37  E-value=0.0023  Score=73.78  Aligned_cols=36  Identities=28%  Similarity=0.447  Sum_probs=32.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ...+||+|||||+.||++|++|++  .|. +|+|+|+..
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~   60 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATD   60 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCC
Confidence            346799999999999999999999  888 599999975

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.36  E-value=0.0024  Score=74.57  Aligned_cols=37  Identities=24%  Similarity=0.241  Sum_probs=34.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..++|+||||+|..|+.+|..|+.  +|.+|+|||++.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCC
Confidence            5678999999999999999999997  999999999983

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.35  E-value=0.0022  Score=79.22  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=34.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .++||+|||+|++||++|+++++  .|.+|+||||..++
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~~   48 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHVR   48 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccccc
Confidence            46899999999999999999999  89999999998763

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.32  E-value=0.0025  Score=78.72  Aligned_cols=35  Identities=49%  Similarity=0.594  Sum_probs=32.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..++|+|||||.+|+++|++|++  .|++|+|+|+..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccc
Confidence            35799999999999999999999  899999999874

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=96.31  E-value=0.0029  Score=72.13  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=33.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~  285 (728)
                      ++..+||+|||||..|+++|++|.+  .|.. ++|+||..
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~   42 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRD   42 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccC
Confidence            4567899999999999999999999  8888 99999985

>PRK13748 putative mercuric reductase; Provisional

Probab=96.29  E-value=0.0026  Score=74.38  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .++||+|||||..|+++|..|++  .|.+|+|||++.+|
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~~~G  133 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERGTIG  133 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCcce
Confidence            47999999999999999999999  89999999998554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.26  E-value=0.0035  Score=53.77  Aligned_cols=32  Identities=31%  Similarity=0.500  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|+|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccc
Confidence            48999999999999999999  899999999975

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.23  E-value=0.0037  Score=71.32  Aligned_cols=36  Identities=39%  Similarity=0.557  Sum_probs=32.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...++|+|||||.+|+++|++|++  .|++|+|+|+..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~  166 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAK--AGHSVTVFEALH  166 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            346799999999999999999999  899999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02612 phytoene desaturase

Probab=96.20  E-value=0.0033  Score=73.87  Aligned_cols=35  Identities=34%  Similarity=0.390  Sum_probs=32.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||++||++|++|++  .|++|+|+|+..
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~  126 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARD  126 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCC
Confidence            35689999999999999999999  999999999964

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.11  E-value=0.0039  Score=77.22  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+||++|++|++  .|++|+|+|+..
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~  339 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFH  339 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCC
Confidence            5689999999999999999999  999999999874

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.08  E-value=0.0039  Score=75.36  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||++|+++|+.|++  .|++|+|+|+..
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~  271 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRA  271 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccc
Confidence            45789999999999999999999  999999999964

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.07  E-value=0.0039  Score=69.80  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+++|||||++|+++|+.|++  .|++|.++||+.
T Consensus       123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKep  157 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEP  157 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            35689999999999999999999  999999999985

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.02  E-value=0.003  Score=71.07  Aligned_cols=47  Identities=32%  Similarity=0.444  Sum_probs=37.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      +||+|||+|++|+++|+.|++  .|++|+|+|++......|+.+.+++.
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~~~~~~s~gs~d~L~   47 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQSALHFSSGSLDLLS   47 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCCchhhhhhHHHhHhh
Confidence            589999999999999999999  89999999998644333443434444

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02487 zeta-carotene desaturase

Probab=96.01  E-value=0.0047  Score=72.45  Aligned_cols=35  Identities=40%  Similarity=0.572  Sum_probs=32.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..+|+|||||+.||++|++|++  .|++|+|+|+..-
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~  109 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPF  109 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCC
Confidence            3589999999999999999999  8999999999753

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.96  E-value=0.0045  Score=71.84  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=32.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ...+||+|||||.+|+++|.+|++  .|++|+|+++.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~  243 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER  243 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence            346899999999999999999999  99999999864

>PRK13054 lipid kinase; Reviewed

Probab=95.92  E-value=0.01  Score=64.08  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=53.7

Q ss_pred             hHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          9 VWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         9 r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      +++++.+|..+-.|.|...|.|+|++++.++|+... .-.+.||||.+...|++.+|+|+..+.++
T Consensus       228 ~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~~-~~~~~iDGE~~~~~p~~i~v~p~al~vl~  292 (300)
T PRK13054        228 PQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAPH-ELTFNLDGEPLSGRHFRIEVLPAALRCRL  292 (300)
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcCC-CCEEEeCCCcCCCccEEEEEEcCeeEEEe
Confidence            456676666666676666899999999999999753 46789999999999999999999996665

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.90  E-value=0.0071  Score=69.64  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+++|+.|++..+|++|+|+|+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            3568999999999999999998644699999999975

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.88  E-value=0.0066  Score=69.64  Aligned_cols=36  Identities=36%  Similarity=0.484  Sum_probs=32.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...++|+|||||.+|+++|+.|++  .|++|+|+|+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            345799999999999999999999  899999999974

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=95.86  E-value=0.0068  Score=64.97  Aligned_cols=36  Identities=19%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMD  288 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~  288 (728)
                      +|++|||||+.|+.+|..|++  .|.+|.||||.. +|+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIGG   38 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIGG   38 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCCC
Confidence            699999999999999998888  899999999964 443

>PLN02507 glutathione reductase

Probab=95.84  E-value=0.0069  Score=70.10  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=31.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      ..+|||+|||||..|+++|+.|++  .|.+|+|||+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSAN--FGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence            346899999999999999999999  8999999997

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.83  E-value=0.0055  Score=71.14  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ...+||+|||||.+|+++|++|++  .|++|+||++.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~  244 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAER  244 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence            346899999999999999999999  99999999753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00052 thioredoxin reductase; Provisional

Probab=95.82  E-value=0.0056  Score=70.84  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=31.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..|||+|||||.+|+++|..|++  .|.+|+|||+.
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHh--CCCeEEEEecc
Confidence            35899999999999999999999  99999999974

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.80  E-value=0.0065  Score=72.63  Aligned_cols=35  Identities=43%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+||++|++|++  .|++|+|+|+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            45799999999999999999999  899999999864

>TIGR00275 flavoprotein, HI0933 family

Probab=95.80  E-value=0.0053  Score=68.94  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=28.9

Q ss_pred             EEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        254 AILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       254 vVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +|||||.+|+++|++|++  .|.+|+|+||...
T Consensus         1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~   31 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKK   31 (400)
T ss_pred             CEEEEeHHHHHHHHHHHh--cCCcEEEEecCcc
Confidence            699999999999999999  8999999999763

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.77  E-value=0.006  Score=74.57  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ....+|+|||||.+|+++|++|++  .|++|+|+|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence            356789999999999999999999  99999999985

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=95.76  E-value=0.0066  Score=74.88  Aligned_cols=35  Identities=43%  Similarity=0.529  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+++|++|++  .|++|+|+|+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEeccc
Confidence            45689999999999999999999  899999999875

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.75  E-value=0.0073  Score=70.34  Aligned_cols=41  Identities=32%  Similarity=0.472  Sum_probs=31.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ..|+|||||++||++|.+|.+  .|++|+++||..       .-||+|+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~-------~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSD-------DIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSS-------SSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCC-------CCCccCee
Confidence            369999999999999999999  899999999863       34677764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.74  E-value=0.0073  Score=73.37  Aligned_cols=35  Identities=40%  Similarity=0.544  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+++|++|++  .|++|+|+|+..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~  464 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALH  464 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            45699999999999999999999  899999999853

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.73  E-value=0.008  Score=75.13  Aligned_cols=36  Identities=28%  Similarity=0.486  Sum_probs=33.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..+||+|||||.+|+++|++|++  +|++|+|+|++..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~  197 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPE  197 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence            46799999999999999999999  9999999999753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.72  E-value=0.0059  Score=74.29  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=31.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +|+|||||++||++|+.|++..+|++|+|+|+...
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            79999999999999999999333899999999753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.71  E-value=0.0075  Score=68.87  Aligned_cols=35  Identities=40%  Similarity=0.606  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+++|+.|++  .|++|+|+|+..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~  173 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARD  173 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCC
Confidence            45689999999999999999999  899999999874

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=95.67  E-value=0.008  Score=75.04  Aligned_cols=35  Identities=40%  Similarity=0.454  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+||++|++|++  .|++|+|+|+..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~  463 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALH  463 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence            35699999999999999999999  899999999864

>PLN02529 lysine-specific histone demethylase 1

Probab=95.64  E-value=0.0078  Score=72.36  Aligned_cols=35  Identities=31%  Similarity=0.469  Sum_probs=32.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...||+|||||++|+++|..|++  .|++|+|+|+..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~  193 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRN  193 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCc
Confidence            46799999999999999999999  999999999964

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=95.63  E-value=0.0085  Score=64.31  Aligned_cols=50  Identities=26%  Similarity=0.280  Sum_probs=38.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc---ccccCCCCccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~---~g~gAS~~agGii~p  300 (728)
                      ..+||+|||||.+||-+|-+|+.  +|.+|+|+|++.   .+..+-..-+|++..
T Consensus         4 ~~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQAfWSfGGLF~v   56 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQAFWSFGGLFLV   56 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHh--cCceEEEEcccccccccceeeeecccEEEe
Confidence            46799999999999999999999  999999999974   232333333555544

>TIGR02462 pyranose_ox pyranose oxidase

Probab=95.63  E-value=0.0093  Score=69.44  Aligned_cols=46  Identities=17%  Similarity=0.025  Sum_probs=36.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      +||+|||+|.+|+++|+.|++  .|++|+|||++....+  .+-|++...
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~~--~~~g~~~~~   46 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADSF--LKIGAHKKN   46 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccCC--Ccccccccc
Confidence            599999999999999999999  8999999999864322  233555444

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.51  E-value=0.01  Score=70.92  Aligned_cols=35  Identities=46%  Similarity=0.574  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+++|+.|++  .|++|+|+|+..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            35689999999999999999999  899999999874

>PRK14727 putative mercuric reductase; Provisional

Probab=95.47  E-value=0.0093  Score=68.57  Aligned_cols=38  Identities=24%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc-ccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g  287 (728)
                      +.++|++|||||..|+++|+.|++  .|.+|+|||++ .+|
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~G   52 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIG   52 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcce
Confidence            457899999999999999999999  89999999996 444

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.37  E-value=0.011  Score=70.61  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+|||+|||||..|..+|+.+++  .|.+|+|||++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCC
Confidence            37899999999999999999999  99999999975

>PLN02546 glutathione reductase

Probab=95.36  E-value=0.011  Score=69.32  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=31.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      .+|||+|||||..|..+|..|++  .|.+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASN--FGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence            46899999999999999999999  9999999997

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=95.34  E-value=0.0099  Score=66.27  Aligned_cols=28  Identities=32%  Similarity=0.491  Sum_probs=25.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEe
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVI  281 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVI  281 (728)
                      ||+|||||.+|+.+|+.+|+  .|.+|+++
T Consensus         1 DViVVGgG~AG~eAA~aaAr--~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR--MGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEE
Confidence            89999999999999999999  99999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.33  E-value=0.015  Score=66.75  Aligned_cols=35  Identities=34%  Similarity=0.478  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+++|+.|++  .|++|+|+|+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            45799999999999999999999  899999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.31  E-value=0.015  Score=69.35  Aligned_cols=35  Identities=37%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+||++|+.|++  .|++|+|+|+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCC
Confidence            46789999999999999999999  899999999875

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.27  E-value=0.015  Score=63.91  Aligned_cols=35  Identities=37%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+++|..|++  .|++|+|+|+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   51 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLP   51 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            35689999999999999999999  899999999964

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.22  E-value=0.014  Score=66.67  Aligned_cols=38  Identities=18%  Similarity=0.221  Sum_probs=34.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc-ccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g  287 (728)
                      +.+||++|||||-.|.++|..+++  .|.+|+|+|+. ..|
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lG   40 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLG   40 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcC
Confidence            468999999999999999999999  89999999998 444

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=95.18  E-value=0.015  Score=67.08  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||++|||||..|+.+|+.+++  .|.+|+|||+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~   35 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVT   35 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccC
Confidence            4799999999999999999999  899999999854

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=95.16  E-value=0.014  Score=66.79  Aligned_cols=36  Identities=33%  Similarity=0.388  Sum_probs=28.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCC-CcEEEeeccccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM  287 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~g  287 (728)
                      ||+|||||.+|..+|..|++..+. ++|+|||+...+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            799999999999999999995433 899999998644

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.13  E-value=0.015  Score=66.40  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +|+|||||..|+++|..|++  .|.+|+|||++..+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~~G   35 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEADLG   35 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCccc
Confidence            79999999999999999999  89999999997644

>PLN03000 amine oxidase

Probab=95.07  E-value=0.016  Score=70.50  Aligned_cols=35  Identities=40%  Similarity=0.559  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||++||++|+.|++  .|++|+|+|+..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~  217 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRK  217 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccC
Confidence            35799999999999999999999  899999999964

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=95.05  E-value=0.015  Score=67.03  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCC-CCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~  284 (728)
                      .+|||+|||||..|..+|..+++  . |.+|+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecc
Confidence            36899999999999999999999  7 8999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG0685|consensus

Probab=95.03  E-value=0.019  Score=64.45  Aligned_cols=36  Identities=36%  Similarity=0.538  Sum_probs=30.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .....|||||||++||++|-+|.++ ...+|+|+|..
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~   54 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEAS   54 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHh-CCceEEEEEec
Confidence            3456899999999999999999973 55689999975

>TIGR01810 betA choline dehydrogenase

Probab=94.97  E-value=0.015  Score=67.82  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      |+||||+|.+|+.+|..|++  .+ ++|.|||++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~--~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSE--DVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhcc--CCCCeEEEEecCC
Confidence            79999999999999999999  66 7999999985

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=94.95  E-value=0.017  Score=66.54  Aligned_cols=34  Identities=38%  Similarity=0.527  Sum_probs=31.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+++|++|++  .|++|+|+|+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~  176 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNR--AGHTVTVFERED  176 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            4699999999999999999999  899999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG2415|consensus

Probab=94.82  E-value=0.023  Score=62.66  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=40.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhh----CCCCcEEEeecccccccCCCCccccccC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRR----FPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~----~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ...+||+|||||-+|||+|..|.+.    ....+|+|+||.... |.-..+|+.+.|
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~-GghtlSGaviep  129 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV-GGHTLSGAVIEP  129 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc-CCceecceeecc
Confidence            3578999999999999999998763    256899999997532 233456777777

>PTZ00188 adrenodoxin reductase; Provisional

Probab=94.75  E-value=0.024  Score=64.95  Aligned_cols=37  Identities=27%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ...|+|||||.+|+.+|.+|+++ .|++|+|+|+...+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~p   75 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNP   75 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence            45799999999999999987643 69999999998644

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.71  E-value=0.022  Score=64.47  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||.+|+++|..|++..++.+|+|||++.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~   35 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD   35 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence            6999999999999999999843467999999975

>KOG4254|consensus

Probab=94.70  E-value=0.026  Score=63.00  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=33.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+|++|||+|..||++|-+|++  -|.+|+|+|++.
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrh   47 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRH   47 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHh--cCcceEEEEEee
Confidence            568999999999999999999999  899999999973

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.67  E-value=0.025  Score=66.42  Aligned_cols=35  Identities=34%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+||++|+.|++  .|++|+|+|+..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~  170 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGP  170 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            35689999999999999999999  899999999875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.57  E-value=0.025  Score=64.23  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|||||||.+|+++|..|++..++++|+|||++.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~   36 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR   36 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            7999999999999999999854688999999974

>KOG4716|consensus

Probab=94.54  E-value=0.037  Score=59.74  Aligned_cols=51  Identities=22%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEP  300 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p  300 (728)
                      .-.||.+|||||-.||++|-+.+.  -|.+|.++|--. .+.|+|+.-||-...
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCvN   68 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCVN   68 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceeee
Confidence            457999999999999999999999  899999999854 467888877776654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=94.45  E-value=0.027  Score=54.77  Aligned_cols=33  Identities=33%  Similarity=0.435  Sum_probs=28.6

Q ss_pred             EEeecceechhhHHHhhhhC---CCCcEEEeecccc
Q psy16975        254 AILGAGIIGLSTALELQRRF---PNCDVTVIADKFN  286 (728)
Q Consensus       254 vVIGAGIiGLStA~~La~~~---~G~~VtVIEk~~~  286 (728)
                      +|||+|..|++++.+|.++.   ...+|+|+|+...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            59999999999999999962   4689999999654

>PRK13984 putative oxidoreductase; Provisional

Probab=94.37  E-value=0.035  Score=65.79  Aligned_cols=37  Identities=41%  Similarity=0.450  Sum_probs=33.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ....+|+|||+|.+|+++|+.|++  .|++|+|+|+...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~  317 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSK  317 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence            345689999999999999999999  8999999998753

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.34  E-value=0.03  Score=64.15  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ||+|||||..|+++|..|++  .|.+|+|+|++..
T Consensus         3 ~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~   35 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGL   35 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCC
Confidence            89999999999999999999  8999999999754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.24  E-value=0.032  Score=62.49  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+|+|||||.+|+++|..|++.....+|+|++++.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            458999999999999999999933334899999874

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]

Probab=94.22  E-value=0.08  Score=57.36  Aligned_cols=70  Identities=23%  Similarity=0.425  Sum_probs=62.8

Q ss_pred             chhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccccc
Q psy16975          7 FGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTE   77 (728)
Q Consensus         7 ~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~~~   77 (728)
                      .++++++.++..+-+|.|...+.|+|.+++.+.++... .=.+.+|||....-|+..+|+|+..+.+..+.
T Consensus       228 ~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~~-~~~~~~DGE~~~~~p~~i~~~p~al~vl~p~~  297 (301)
T COG1597         228 QSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSDP-PIPVNLDGEYLGKTPVTIEVLPGALRVLVPPD  297 (301)
T ss_pred             ccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcCC-CceEeeCCccCCCCcEEEEEecccEEEEcCCC
Confidence            47999999999999999999999999999999999984 45789999999999999999999996655544

>PRK09897 hypothetical protein; Provisional

Probab=94.19  E-value=0.036  Score=64.62  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-cccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDT  289 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~g  289 (728)
                      .+|+|||||..|+++|.+|++.....+|+|+|+.. +|.|
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G   41 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVG   41 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcc
Confidence            37999999999999999999843457999999954 5544

>PLN02976 amine oxidase

Probab=94.09  E-value=0.036  Score=70.04  Aligned_cols=35  Identities=37%  Similarity=0.575  Sum_probs=32.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..++|+|||||++|+++|++|++  .|++|+|||+..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~  726 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARS  726 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeecc
Confidence            35789999999999999999999  899999999864

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.08  E-value=0.035  Score=55.46  Aligned_cols=32  Identities=34%  Similarity=0.492  Sum_probs=27.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|.|||||.+|..+|..++.  .|++|+++|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence            48999999999999999999  899999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=93.99  E-value=0.039  Score=62.47  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+.+|||||||.+|+++|..|.+  .+++|+|||+..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~   43 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRN   43 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCC
Confidence            345689999999999999999977  678999999864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.94  E-value=0.041  Score=61.05  Aligned_cols=35  Identities=14%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|||||||.+|+++|..|.+..+..+|+||+++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~   37 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            48999999999999999998855678999999875

>PLN02785 Protein HOTHEAD

Probab=93.85  E-value=0.038  Score=65.27  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...||+||||||.+|+..|..|++  . .+|+|||++.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~-~~VLllE~G~   87 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--N-FSVLLLERGG   87 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--C-CcEEEEecCC
Confidence            346999999999999999999999  4 7999999985

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.68  E-value=0.05  Score=54.72  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=26.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.|.|||.|.+||.+|..|++  .|++|+.+|.+.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCCh
Confidence            369999999999999999999  999999999874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03702 lip_kinase_YegS lipid kinase YegS

Probab=93.66  E-value=0.12  Score=55.69  Aligned_cols=63  Identities=19%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             hHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          9 VWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         9 r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      +++++.+|..+-+|.|  .+++.+.+++.++|+... .-.+.||||.+...|++.+|.|+..+.++
T Consensus       224 ~~~~~~~l~~~~~g~~--~~~~~~~~~~~i~i~~~~-~~~~~vDGE~~~~~p~~i~v~p~al~v~~  286 (293)
T TIGR03702       224 PELLPATLSTLFGGDK--NPEFVRARLPWLEIEAPQ-PLTFNLDGEPLSGRHFRIEVLPGALRCHL  286 (293)
T ss_pred             HHHHHHHHHHHhcCCC--CCcEEEEEcCEEEEEeCC-CcEEEECCCcCCCceEEEEEEcCeEEEEc
Confidence            5677778777777864  468889999999999754 46789999999999999999999996665

Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.57  E-value=0.051  Score=52.00  Aligned_cols=31  Identities=35%  Similarity=0.505  Sum_probs=29.3

Q ss_pred             EEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+|||+|.+|+..|+.|++  .|++|+++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH--CCCceEEEEccc
Confidence            6899999999999999999  999999999875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG1238|consensus

Probab=93.30  E-value=0.063  Score=62.64  Aligned_cols=40  Identities=23%  Similarity=0.332  Sum_probs=35.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ....||.+|||||-+||..|-.|++. +.++|.|||++...
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence            45689999999999999999999996 78999999998543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.23  E-value=0.069  Score=57.93  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..++|+|||+|.+|.+.|..|++  .|++|+++.++.
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence            34579999999999999999999  899999999964

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.21  E-value=0.071  Score=57.25  Aligned_cols=33  Identities=30%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|...|..|+.  .|++|+++|...
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCH
Confidence            379999999999999999999  999999999874

>KOG1800|consensus

Probab=93.13  E-value=0.085  Score=57.92  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=34.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ...|+|||+|-+|.-||++|.+++.+..|+|+|+...+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            45899999999999999999996678999999998655

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.07  E-value=0.082  Score=57.05  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|.|||||.+|.-+||.|++  +|..|.+.|-..
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~--~Gv~V~L~EMRp   36 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAK--RGVPVILYEMRP   36 (439)
T ss_pred             CCceEEEcccccccHHHHHHHH--cCCcEEEEEccc
Confidence            4469999999999999999999  999999999753

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.92  E-value=0.07  Score=57.79  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFAR--AGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH--CCCeeEEEeCCH
Confidence            69999999999999999999  899999999874

>PRK07846 mycothione reductase; Reviewed

Probab=92.86  E-value=0.072  Score=60.85  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=29.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      +||++|||||..|.++|..  .  .|.+|+|||++..|.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~--~G~~V~lie~~~~GG   35 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--F--ADKRIAIVEKGTFGG   35 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--H--CCCeEEEEeCCCCCC
Confidence            3799999999999988754  4  589999999976543

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=92.81  E-value=0.073  Score=60.88  Aligned_cols=53  Identities=32%  Similarity=0.396  Sum_probs=40.6

Q ss_pred             cCCceeeEEeecCCCCCCCccccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        226 NGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       226 g~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+|...|.+..+. .    ......|+|||||-+||++|+.|++  .|++|+|+|+..
T Consensus       104 ~d~~~~~g~i~~~~~-~----~~tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~  156 (457)
T COG0493         104 GDKADREGWIPGELP-G----SRTGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVA  156 (457)
T ss_pred             hhHHHHhCCCCCCCC-C----CCCCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcC
Confidence            345566666665522 1    1233689999999999999999999  999999999864

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.63  E-value=0.093  Score=56.28  Aligned_cols=34  Identities=26%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            4579999999999999999999  899999999863

>TIGR03452 mycothione_red mycothione reductase

Probab=92.52  E-value=0.085  Score=60.28  Aligned_cols=34  Identities=9%  Similarity=0.071  Sum_probs=28.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +||++|||+|..|..+|  ++.  .|.+|+|||++..|
T Consensus         2 ~yD~vvIG~G~~g~~aa--~~~--~g~~V~lie~~~~G   35 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPD--PRF--ADKRIAIVEKGTFG   35 (452)
T ss_pred             CcCEEEECCCHHHHHHH--HHH--CCCeEEEEeCCCCC
Confidence            58999999999998875  344  68999999997654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=92.25  E-value=0.09  Score=51.22  Aligned_cols=32  Identities=31%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||-.|.+.|..|++  .|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--CTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHH--cCCEEEEEeccH
Confidence            48999999999999999999  899999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG2404|consensus

Probab=92.02  E-value=0.14  Score=55.03  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCC
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTS  291 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS  291 (728)
                      .|||||+|.+|||++..|..  .|-.|+++|+...-.|.|
T Consensus        11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNS   48 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcc
Confidence            69999999999999999998  666799999976444443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.82  E-value=0.13  Score=55.69  Aligned_cols=32  Identities=34%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ++|+|||+|.+|...|+.|++  .|.+|++++|.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR--AGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            479999999999999999999  89999999995

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.76  E-value=0.14  Score=55.98  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|++|...|..++.  .|++|+++|...
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            469999999999999999999  999999999864

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=91.75  E-value=0.1  Score=57.45  Aligned_cols=34  Identities=18%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             eEEEeecceechhhHHHhhhh-CCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRR-FPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~-~~G~~VtVIEk~~  285 (728)
                      +|||||||.+|+++|..|.++ .++.+|+|||++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~   35 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS   35 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence            489999999999999999752 2578999999875

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=91.48  E-value=0.15  Score=58.64  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=31.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||-+|+-+|+..++  -|.++.++--..
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~   37 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNL   37 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhc--cCCeEEEEEcCC
Confidence            345999999999999999999999  899999987653

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.45  E-value=0.15  Score=55.85  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecHH
Confidence            369999999999999999999  899999999853

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.44  E-value=0.15  Score=54.60  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||+|.+|.+.|..|++  .|++|+++|.+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence            369999999999999999999  899999999863

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.21  E-value=0.15  Score=54.58  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|+|||+|.+|.+.|..|++  .|++|+++|++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHh--CCCcEEEEeCCH
Confidence            59999999999999999999  899999999864

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.73  E-value=0.18  Score=51.39  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ..+|+|||+|.+|+.+|..|++  .|. +|+|+|.+.+.
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~--~Gvg~i~lvD~D~ve   57 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLAR--AGIGKLILVDFDVVE   57 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--cCCCEEEEECCCEEc
Confidence            4579999999999999999999  898 69999998643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.50  E-value=0.21  Score=53.59  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence            469999999999999999999  899999999864

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=90.39  E-value=0.25  Score=56.47  Aligned_cols=40  Identities=25%  Similarity=0.396  Sum_probs=33.5

Q ss_pred             ceEEEeecceechhhHHHhhhh--CCCCcEEEeecccccccC
Q psy16975        251 HKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFNMDTT  290 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~--~~G~~VtVIEk~~~g~gA  290 (728)
                      .++=|||+||++|++|.+|-+.  .+|-+|+|+|+....+|+
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs   44 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS   44 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence            4677999999999999999985  378899999998754443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=90.37  E-value=0.22  Score=51.59  Aligned_cols=32  Identities=38%  Similarity=0.517  Sum_probs=30.5

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +++|||+|-.|.+.|-.|.+  .|++|+++|++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSE--EGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHh--CCCceEEEEcCH
Confidence            69999999999999999999  899999999975

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.35  E-value=0.22  Score=53.08  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|.++|..|++  .|++|+++|.+.
T Consensus         5 kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAV--AGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHH--CCCceEEEeCCH
Confidence            69999999999999999999  899999999763

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=90.27  E-value=0.21  Score=56.06  Aligned_cols=36  Identities=33%  Similarity=0.680  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..|||||||..|+.+|..|.+..++.+|++||+..
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~   38 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD   38 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence            457999999999999999999941258899999974

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=90.13  E-value=0.22  Score=53.38  Aligned_cols=30  Identities=30%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      +|+|||+|.+|++.|..|++  .|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCceEEEec
Confidence            59999999999999999999  8999999998

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=89.98  E-value=0.22  Score=54.95  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||+|.+|+-+|..|++  +|++|+++|+..
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~  169 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAAD  169 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEccc
Confidence            3689999999999999999999  999999999975

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.90  E-value=0.24  Score=56.21  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=29.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~  285 (728)
                      ++|+|||+|..|+.+|.+|.+..+.-. |+|+|+..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~   37 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP   37 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence            589999999999999999999643333 99999975

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.63  E-value=0.27  Score=53.59  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.|.|||+|.+|...|..|++  .|++|+++++..
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAAS--KGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            379999999999999999999  899999999953

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=89.58  E-value=0.26  Score=52.69  Aligned_cols=31  Identities=45%  Similarity=0.621  Sum_probs=29.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +|+|||+|-+|...|..|++  .|++|++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            59999999999999999999  89999999984

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=89.57  E-value=0.25  Score=54.79  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||.|.+||++|..|++  -|++|+.+|.+.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~--~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAE--LGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHH--cCCeEEEEeCCH
Confidence            369999999999999999999  899999999864

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.49  E-value=0.29  Score=52.92  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            469999999999999999999  899999999753

>PRK12361 hypothetical protein; Provisional

Probab=89.46  E-value=0.4  Score=56.27  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             hHhHHHHHhhcCC--CcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          9 VWLIEEFLIGLAS--GSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         9 r~~~l~~~~~~~~--g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      +++++.++..+-.  +.|...++|+|.+++.++|+... .=.+.||||.+...|+..+|.|+-.+.++
T Consensus       474 ~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~~-~~~~~iDGE~~~~~p~~i~v~p~al~vlv  540 (547)
T PRK12361        474 GEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQK-PIKYVIDGELFEDEDLTIEVQPASLKVFV  540 (547)
T ss_pred             hHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeCC-ceEEEECCccCCceEEEEEEecCceEEEe
Confidence            3456655433333  46788899999999999999653 45778999999999999999999996666

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.45  E-value=0.27  Score=56.55  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=29.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+|+|||+|.+|+++|..|++  .|++|+++|+.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~   48 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLE--LGARVTVVDDG   48 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            379999999999999999999  89999999965

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=89.38  E-value=0.3  Score=55.30  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||.|.+|+++|..|++  .|++|+++|++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCCH
Confidence            479999999999999999999  899999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.26  E-value=0.3  Score=52.37  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence            369999999999999999999  899999999864

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.08  E-value=0.3  Score=52.98  Aligned_cols=32  Identities=28%  Similarity=0.594  Sum_probs=28.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~  284 (728)
                      ..|.|||+|.+|+++|+.|+.  .|+ +|+++|..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~--~g~~~VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAE--KELADLVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            369999999999999999999  666 89999983

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG2755|consensus

Probab=88.66  E-value=0.35  Score=50.87  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=28.5

Q ss_pred             EEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        253 VAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+||||||+|.|+|-.|+...|..+|.++-..
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitas   33 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS   33 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence            68999999999999999997788899988654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=88.65  E-value=0.31  Score=54.56  Aligned_cols=33  Identities=42%  Similarity=0.588  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~  177 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQ--RRCKVTVIELAA  177 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            479999999999999999999  899999999864

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=88.60  E-value=0.35  Score=56.00  Aligned_cols=32  Identities=31%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|.|||+|.+|.+.|..|++  .|++|+|+|+..
T Consensus         6 kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLL--AGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            69999999999999999999  899999999853

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=88.54  E-value=0.34  Score=52.57  Aligned_cols=32  Identities=34%  Similarity=0.514  Sum_probs=29.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~  285 (728)
                      +|+|||+|.+|+++|+.|+.  .|  .+|.++|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCc
Confidence            69999999999999999999  77  5899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=88.28  E-value=0.39  Score=54.18  Aligned_cols=32  Identities=31%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||.|.+|+.+|..|++  .|++|+++|++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHh--cCCeEEEEECCH
Confidence            59999999999999999999  899999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=88.19  E-value=0.37  Score=53.14  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=32.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ...|+|||+|-+|+.+|..|++  .|. +++|+|.+.+.
T Consensus        24 ~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~Ve   60 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVR--AGVGKVTIVDRDYVE   60 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCccC
Confidence            4579999999999999999999  888 89999998643

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=87.74  E-value=0.39  Score=54.67  Aligned_cols=39  Identities=28%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      |+.++||+|+|-|+.-+-.|-.|++  .|.+|..+|++...
T Consensus         1 m~~~yDviI~GTGl~esila~als~--~GkkVLhiD~n~yY   39 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSR--SGKKVLHIDRNDYY   39 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS
T ss_pred             CCccceEEEECCCcHHHHHHHHHHh--cCCEEEecCCCCCc
Confidence            5678999999999999999999999  99999999998643

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=87.74  E-value=0.41  Score=59.07  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             cceEEEeecceechhhHHHhhhhC--CCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~  285 (728)
                      ..+|||||+|.+|+++|..|.+..  .+++|+||+++.
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~   40 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP   40 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC
Confidence            348999999999999999998632  468999999875

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=87.70  E-value=0.48  Score=44.75  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=31.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeecccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMD  288 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g~  288 (728)
                      +..|+|||+|-+|+.+|..|++  .|. +++|+|.+....
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~--~Gv~~i~lvD~d~v~~   39 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLAR--SGVGKITLVDDDIVEP   39 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH--HTTSEEEEEESSBB-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--hCCCceeecCCcceee
Confidence            3579999999999999999999  777 799999987543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.54  E-value=0.38  Score=54.87  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=29.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|+|||.|.+|+++|+.|++  .|++|++.|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCC
Confidence            58999999999999999999  999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=87.44  E-value=0.41  Score=54.95  Aligned_cols=33  Identities=33%  Similarity=0.454  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~  213 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAAD  213 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecC
Confidence            489999999999999999999  899999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=87.37  E-value=0.42  Score=54.25  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+..|..|++  .|.+|+|+++..
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~  190 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAAS  190 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            479999999999999999999  899999999864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=87.20  E-value=0.43  Score=52.94  Aligned_cols=34  Identities=29%  Similarity=0.561  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+-+|..|++  .|.+|+++++..
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~~  174 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNAA  174 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCC
Confidence            3479999999999999999999  899999999854

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=87.09  E-value=0.49  Score=55.04  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|..+|..|++  .|++|+++|+..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            469999999999999999999  899999999874

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=87.04  E-value=0.57  Score=50.80  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..|.|||||.+|..+|+.++.  .|++|+++|..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhh--cCCceEEEeCC
Confidence            479999999999999999999  89999999987

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=86.75  E-value=0.5  Score=46.95  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCc-EEEeeccccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNM  287 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~~g  287 (728)
                      .|+|||+|.+|..+|..|++  .|.. ++|+|.+...
T Consensus         1 ~VlViG~GglGs~ia~~La~--~Gvg~i~lvD~D~v~   35 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR--SGVGNLKLVDFDVVE   35 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEEc
Confidence            48999999999999999999  8884 9999998643

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.40  E-value=0.52  Score=51.33  Aligned_cols=32  Identities=31%  Similarity=0.517  Sum_probs=29.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||||-+|.+.|..|++  .|++|++++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~--~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSS--KKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHH--CCCeEEEEecCH
Confidence            59999999999999999999  899999999853

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=86.34  E-value=0.5  Score=53.84  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+.+|..|++  .|.+|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence            489999999999999999999  899999999864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.31  E-value=0.57  Score=50.01  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=29.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||.|.+|.+.|..|++  .|++|+++|+..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            59999999999999999999  899999999863

>KOG1335|consensus

Probab=86.31  E-value=0.62  Score=51.47  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=32.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|++|||+|.-|-.+|.+.++  .|++.+.+|+..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~   72 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRG   72 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccC
Confidence            57999999999999999999999  999999999964

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=86.20  E-value=0.7  Score=43.82  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCc-EEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~  284 (728)
                      ...++|||||-+|-+++++|++  .|.+ |+|+.|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence            4589999999999999999999  7877 9999885

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.18  E-value=0.58  Score=53.17  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||+|-+|+++|..|++  .|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence            4579999999999999999999  999999999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=86.15  E-value=0.57  Score=50.64  Aligned_cols=32  Identities=44%  Similarity=0.546  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|...|..|++  .|++|+++++..
T Consensus         3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence            69999999999999999999  899999999863

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=86.14  E-value=0.52  Score=54.71  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|..+|..|++  .|++|+++|+..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            469999999999999999999  999999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=86.12  E-value=0.56  Score=44.63  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=30.4

Q ss_pred             eEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      .|+|||+|-+|+.+|..|++  .|. +++|+|.+...
T Consensus         1 ~VliiG~GglGs~ia~~L~~--~Gv~~i~ivD~d~v~   35 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR--SGVGKITLIDFDTVE   35 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCcC
Confidence            48999999999999999999  887 79999998654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.08  E-value=0.54  Score=56.99  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||||.+|..+|+.++.  .|++|+++|...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCH
Confidence            469999999999999999999  999999999874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=86.05  E-value=0.54  Score=51.83  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ...|+|||+|-+|..+|..|++  .|. +++|+|.+.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~--aGvg~i~lvD~D~ve   60 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVR--AGIGKLTIADRDYVE   60 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCccc
Confidence            4579999999999999999999  887 89999998754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.99  E-value=0.62  Score=50.44  Aligned_cols=34  Identities=29%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~--~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASA--NGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence            3479999999999999999999  899999999864

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=85.91  E-value=0.56  Score=53.92  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-.|..|++  .|.+|+||++..
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~  207 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFD  207 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCC
Confidence            489999999999999999999  899999999864

>PRK07846 mycothione reductase; Reviewed

Probab=85.83  E-value=0.56  Score=53.61  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~  199 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSG  199 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            489999999999999999999  899999999863

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=85.71  E-value=0.6  Score=52.18  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      .+|+|||||-+|.++|+.|++  ++ .+|+|.||..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCH
Confidence            479999999999999999999  66 8999999973

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.51  E-value=0.62  Score=49.64  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC-CcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~g  287 (728)
                      ....|+|||+|-+|+.+|..|++  .| -+++|+|.+...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCEec
Confidence            35689999999999999999999  77 589999998644

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=85.50  E-value=0.59  Score=56.59  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||||.+|..+|+.++.  .|++|+++|...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            469999999999999999999  899999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02053 MerA mercuric reductase

Probab=85.48  E-value=0.58  Score=53.50  Aligned_cols=32  Identities=28%  Similarity=0.567  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+++|||+|.+|+-+|..|++  .|.+|+|+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~  198 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFAR--LGSEVTILQRS  198 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence            589999999999999999999  89999999986

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=85.30  E-value=0.67  Score=47.63  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCc-EEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~~g  287 (728)
                      ...|+|||+|.+|+.+|..|++  .|.. ++|+|.+...
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D~ve   64 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFDVVE   64 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEec
Confidence            4579999999999999999999  7775 9999998654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=85.28  E-value=0.71  Score=47.19  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||||-+|..-|..|.+  .|.+|+|++.+.
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~   42 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLK--AGAQLRVIAEEL   42 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCC
Confidence            479999999999999999999  899999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=85.18  E-value=0.62  Score=53.21  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+++|||||.+|+-.|..|++  .|.+|+|+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~  198 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHG--LGSETHLVIRH  198 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecC
Confidence            489999999999999999999  89999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=85.06  E-value=0.69  Score=53.00  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||||++|+=.|..+++  -|.+|||||+..
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~  206 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGD  206 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence            3479999999999999999999  899999999964

>KOG3855|consensus

Probab=85.01  E-value=0.57  Score=52.22  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhh--CCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~--~~G~~VtVIEk~~~  286 (728)
                      ..+||+|+|||.+|++.|-.|..+  ...++|.++|....
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            478999999999999999999864  24689999998754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=84.93  E-value=0.57  Score=57.44  Aligned_cols=33  Identities=15%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             EEEeecceechhhHHHhhhhC-CCCcEEEeeccc
Q psy16975        253 VAILGAGIIGLSTALELQRRF-PNCDVTVIADKF  285 (728)
Q Consensus       253 VvVIGAGIiGLStA~~La~~~-~G~~VtVIEk~~  285 (728)
                      |||||||.+|+++|.+|.+.. .+++|+||+++.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~   34 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP   34 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCC
Confidence            689999999999999998742 468999999875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=84.90  E-value=0.77  Score=44.90  Aligned_cols=33  Identities=33%  Similarity=0.447  Sum_probs=30.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ...|+|||||=+|..-|..|.+  .|.+|+||+++
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIsp~   45 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKD--TGAFVTVVSPE   45 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCc
Confidence            4579999999999999999999  89999999754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=84.86  E-value=0.69  Score=47.06  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      .+..|+|||+|-+|..+|..|++  .|. +++|+|.+...
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d~ve   57 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDDHVD   57 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCCEEc
Confidence            35689999999999999999999  786 89999998653

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.77  E-value=0.67  Score=52.90  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~  205 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALP  205 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            479999999999999999999  899999999863

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.72  E-value=0.53  Score=51.32  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=32.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..|||+|||+|-+|.++|.+.++  .|.+.-|+...+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~aerf  244 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVAERF  244 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHh--hcchhhhhhhhh
Confidence            457999999999999999999999  899888887765

>PRK06370 mercuric reductase; Validated

Probab=84.71  E-value=0.68  Score=52.98  Aligned_cols=33  Identities=36%  Similarity=0.504  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~  204 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGP  204 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            589999999999999999999  899999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.67  E-value=0.69  Score=53.09  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=29.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+|+|||+|.+|+-.|..|++  .|.+|+|+|+.
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~  206 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYL  206 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCC
Confidence            479999999999999999999  89999999974

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=84.66  E-value=0.79  Score=46.75  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ...|+|||||=+|...|..|.+  .|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCC
Confidence            4579999999999999999999  89999999865

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=84.39  E-value=0.76  Score=52.95  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=29.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|+|||+|.+|+.+|..|++...|++|+.+|.+.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            36999999999999999999922258899999753

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=84.21  E-value=0.71  Score=56.11  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||||.+|..+|+.++.  .|++|+++|...
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHh--CCCcEEEecCCH
Confidence            469999999999999999999  899999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=84.12  E-value=0.72  Score=52.75  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~  203 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAP  203 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            479999999999999999999  899999999863

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.11  E-value=0.77  Score=55.60  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.1

Q ss_pred             ceEEEeecceechhhHHHhh-hhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La-~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||||.+|..+|+.++ .  .|++|+++|...
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCH
Confidence            46999999999999999999 7  899999999864

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=84.07  E-value=0.77  Score=51.83  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||+|.+|+..|..|++  .|.+|+++++..
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~  170 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSE  170 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCc
Confidence            489999999999999999999  899999999864

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.01  E-value=0.76  Score=52.66  Aligned_cols=32  Identities=34%  Similarity=0.487  Sum_probs=29.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+|+|||+|.+|+-.|..|++  .|.+|+|+++.
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~  204 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFL  204 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEecC
Confidence            479999999999999999999  89999999864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=83.97  E-value=0.91  Score=49.66  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ...|+|||||-+|.++|+.|+.  +|+ +|.++|...
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~~   40 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIVK   40 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCC
Confidence            4589999999999999999998  775 899999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=83.95  E-value=0.76  Score=52.24  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-.|..|++  .|.+|+|+++..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~  181 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYE--RGLHPTLIHRSD  181 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCcEEEEeccc
Confidence            479999999999999999999  899999999864

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.94  E-value=0.8  Score=49.81  Aligned_cols=32  Identities=38%  Similarity=0.527  Sum_probs=29.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|.|+|+|.+|+-.|+.|++  .|.+|+++-|..
T Consensus         2 kI~IlGaGAvG~l~g~~L~~--~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAK--AGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHh--CCCeEEEEecHH
Confidence            69999999999999999999  888999998865

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=83.85  E-value=0.65  Score=50.81  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=22.3

Q ss_pred             eechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        260 IIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       260 IiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+||++|++|++  .|++|+|+|+..
T Consensus         1 iaGL~aA~~L~~--~G~~v~vlEa~~   24 (450)
T PF01593_consen    1 IAGLAAAYYLAK--AGYDVTVLEASD   24 (450)
T ss_dssp             HHHHHHHHHHHH--TTTEEEEEESSS
T ss_pred             ChHHHHHHHHHh--CCCCEEEEEcCC
Confidence            589999999999  899999999975

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=83.82  E-value=0.88  Score=41.07  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||+|-+|..-+..|.+  .|.+|+|+.+..
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLE--AGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCch
Confidence            4579999999999999999999  899999999885

>KOG1371|consensus

Probab=83.65  E-value=1.1  Score=48.74  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=28.1

Q ss_pred             eEEEee-cceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .|+|.| ||.+|..|+++|.+  +|++|+++|--
T Consensus         4 ~VLVtGgaGyiGsht~l~L~~--~gy~v~~vDNl   35 (343)
T KOG1371|consen    4 HVLVTGGAGYIGSHTVLALLK--RGYGVVIVDNL   35 (343)
T ss_pred             EEEEecCCcceehHHHHHHHh--CCCcEEEEecc
Confidence            688887 59999999999999  99999999963

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=83.49  E-value=0.82  Score=52.14  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-.|..|++  .|.+|+|+++..
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~  208 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRD  208 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            3589999999999999999999  899999999864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=83.26  E-value=0.85  Score=55.17  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             ceEEEeecceechhhHHHhh-hhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La-~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||||.+|..+|+.++ +  .|++|+++|...
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATK--AGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHH--cCCeEEEEeCCH
Confidence            46999999999999999998 6  799999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=83.21  E-value=0.99  Score=44.90  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=28.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|..+.-+|+.|++  .|.+|+++-|..
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecCC
Confidence            4689999999999999999999  789999998864

...

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=83.17  E-value=0.92  Score=50.96  Aligned_cols=31  Identities=32%  Similarity=0.491  Sum_probs=27.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||.|.+|+.+|..|+.   |++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~---G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ---NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh---CCcEEEEECCH
Confidence            59999999999999977764   79999999864

>PRK04148 hypothetical protein; Provisional

Probab=82.99  E-value=1.2  Score=42.45  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++||.| .|.+.|..|++  .|++|+.+|-+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~--~G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKE--SGFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHH--CCCEEEEEECCH
Confidence            469999999 99999999999  899999999864

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=82.96  E-value=0.8  Score=49.41  Aligned_cols=30  Identities=30%  Similarity=0.421  Sum_probs=27.3

Q ss_pred             EEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975        253 VAILGAGIIGLSTALELQRRFPNC-DVTVIADK  284 (728)
Q Consensus       253 VvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~  284 (728)
                      |+|||||.+|.++|+.|+.  .++ +|+++|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCC
Confidence            6899999999999999998  665 99999986

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=82.92  E-value=1  Score=43.98  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|.|||-|.+|...|.+|++  .|++|+++|+..
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccch
Confidence            379999999999999999999  899999999864

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=82.86  E-value=0.9  Score=51.82  Aligned_cols=33  Identities=33%  Similarity=0.525  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||+|.+|+-.|..|++  .|.+|+|+++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~  202 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSR--LGVKVTVFERGD  202 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence            479999999999999999999  899999999864

>TIGR03452 mycothione_red mycothione reductase

Probab=82.66  E-value=0.91  Score=51.91  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+++|||+|.+|+-.|..|++  .|.+|+||++.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~  201 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRS  201 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEcc
Confidence            479999999999999999999  89999999985

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=82.41  E-value=1  Score=47.34  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ..+|+|||+|-+|+.+|..|++  .|. +++|+|.+.+.
T Consensus        32 ~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D~ve   68 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAA--AGVGTLTLVDFDTVS   68 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCEEC
Confidence            4689999999999999999999  775 79999998654

>KOG2304|consensus

Probab=82.29  E-value=1.3  Score=45.82  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |.....|.|||||.+|.-+|--.+.  .|+.|.++|+..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~--sg~~V~l~d~~~   44 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAAT--SGLNVWLVDANE   44 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHh--cCCceEEecCCH
Confidence            4455689999999999999999999  999999999864

>PRK06223 malate dehydrogenase; Reviewed

Probab=82.26  E-value=1.1  Score=48.51  Aligned_cols=32  Identities=31%  Similarity=0.413  Sum_probs=28.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~  284 (728)
                      .+|+|||+|.+|.++|+.|+.  .|+ +|.++|..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~--~~~~ev~L~D~~   35 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLAL--KELGDVVLFDIV   35 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEEECC
Confidence            479999999999999999998  654 99999984

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=82.26  E-value=1  Score=47.14  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ..+|+|||+|-+|..+|..|++  .|. +++|+|.+...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~--~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAA--AGVGNLTLLDFDTVS   60 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCccc
Confidence            4589999999999999999999  664 79999998754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=81.89  E-value=1.3  Score=43.92  Aligned_cols=34  Identities=32%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             CcceEEEeecce-echhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGI-iGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ...+|+|||+|- +|..+|.+|.+  .|.+|+|+.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~--~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLN--RNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhh--CCCEEEEEECC
Confidence            356899999996 69999999999  88899999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08328 hypothetical protein; Provisional

Probab=81.89  E-value=1.1  Score=46.70  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=31.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ...|+|||+|-+|+.+|..|++  .|. +++|+|.+...
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~--~Gvg~i~lvD~D~ve   63 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAA--AGVGRILLIDEQTPE   63 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCccC
Confidence            4579999999999999999999  775 69999988654

>PTZ00052 thioredoxin reductase; Provisional

Probab=81.65  E-value=1.1  Score=52.00  Aligned_cols=31  Identities=45%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      .+++|||+|.+|+-.|..|++  .|.+|+|+++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~  213 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNE--LGFDVTVAVR  213 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEc
Confidence            479999999999999999999  8999999975

>KOG0399|consensus

Probab=81.58  E-value=1.5  Score=54.10  Aligned_cols=42  Identities=36%  Similarity=0.529  Sum_probs=37.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      -..|+|||.|-+||++|-.|-+  .|+.|+|+||.       .+.||+++.
T Consensus      1785 g~~vaiigsgpaglaaadqlnk--~gh~v~vyer~-------dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERS-------DRVGGLLMY 1826 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhh--cCcEEEEEEec-------CCcCceeee
Confidence            4589999999999999999999  99999999985       456788776

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=80.89  E-value=1.5  Score=42.04  Aligned_cols=34  Identities=35%  Similarity=0.395  Sum_probs=29.0

Q ss_pred             eEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||| |-+|.++|+.|....-..++.++|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            6999999 999999999999943345799999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=80.76  E-value=1.2  Score=51.25  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~  216 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRR--LGAEVTILEALP  216 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence            489999999999999999999  899999999863

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=80.64  E-value=1.5  Score=44.45  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      +..|+|||+|-+|+.+|..|++  .|. +++|+|.+...
T Consensus        19 ~s~VlviG~gglGsevak~L~~--~GVg~i~lvD~d~ve   55 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVL--AGIDSITIVDHRLVS   55 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEECCcCC
Confidence            5689999999999999999999  786 59999998653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR00518 alaDH alanine dehydrogenase

Probab=80.56  E-value=1.3  Score=49.36  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+|+|||+|.+|+.+|..|..  .|.+|+++|+.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANG--LGATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence            4579999999999999999999  88999999985

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=80.53  E-value=1.3  Score=46.46  Aligned_cols=40  Identities=28%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhC---------CCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRF---------PNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~---------~G~~VtVIEk~~~g  287 (728)
                      ....+|+|||+|-+|+.+|..|++..         .|.+++|+|.+.+.
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve   57 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS   57 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence            45678999999999999999999831         13489999998764

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=80.49  E-value=1.2  Score=47.65  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||.|.+|.+.|..|++  .|++|+++++..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~--~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAK--AGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            38899999999999999999  899999999864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=80.43  E-value=1.5  Score=47.74  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+|+|||+|-+|.++||.|+.....-++.|+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            458999999999999999999832234799999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=80.39  E-value=1.1  Score=51.63  Aligned_cols=31  Identities=32%  Similarity=0.351  Sum_probs=28.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +++|||||.+|+-.|..|++  .|.+|+|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAG--IGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHH--hCCcEEEEEec
Confidence            69999999999999999999  89999999763

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=80.37  E-value=1.3  Score=45.92  Aligned_cols=36  Identities=25%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ...|+|||+|-+|+.+|..|++  .|. +++|+|.+...
T Consensus        21 ~~~VlivG~GglGs~va~~La~--~Gvg~i~lvD~D~ve   57 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAA--AGVGKLGLVDDDVVE   57 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCEEc
Confidence            5689999999999999999999  776 79999998653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=80.28  E-value=1.4  Score=45.18  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=28.5

Q ss_pred             eEEEee-cceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +|.||| +|-+|.+.|..|++  .|++|+++++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~   33 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRD   33 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcC
Confidence            599997 79999999999999  89999999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=80.26  E-value=1.4  Score=43.27  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|+|+|.+|..+|.-|..  -|.+|+++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCCH
Confidence            4589999999999999999999  899999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PTZ00058 glutathione reductase; Provisional

Probab=80.16  E-value=1.3  Score=52.29  Aligned_cols=34  Identities=18%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+-.|..|++  .|.+|+|+++..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~  270 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNR--LGAESYIFARGN  270 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecc
Confidence            4589999999999999999999  899999999863

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=80.15  E-value=1.3  Score=47.90  Aligned_cols=32  Identities=34%  Similarity=0.418  Sum_probs=28.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~  285 (728)
                      .|+|||+|-+|.++|+.|+.  .|  .+|+++|+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVN--QGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCc
Confidence            59999999999999999999  67  5899999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=80.11  E-value=1.6  Score=47.17  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+|+|||+|++|.-.|.-+.-  -|.+|+|+|..
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n  200 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLN  200 (371)
T ss_pred             CccEEEECCccccchHHHHHhc--cCCeeEEEecC
Confidence            4589999999999999999988  89999999986

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=80.02  E-value=1.3  Score=50.84  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+++|||+|.+|+-.|..|++  .|.+|+++++.
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~  209 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSR  209 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcC
Confidence            479999999999999999999  89999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	728
1kif_A	347	D-Amino Acid Oxidase From Pig Kidney Length = 347		5e-14
1an9_A	340	D-Amino Acid Oxidase Complex With O-Aminobenzoate L		7e-14
3g3e_A	351	Crystal Structure Of Human D-Amino Acid Oxidase In		1e-12
2du8_A	347	Crystal Structure Of Human D-Amino Acid Oxidase Len		1e-12

>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney Length = 347

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 152/367 (41%), Gaps = 82/367 (22%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P  +   P
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTS--EP 59
Query: 308 DLETTKEW----IRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
                  W      Y   H     + N G+  ++GYNL    ++   + Y K ++  +++
Sbjct: 60  SNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLF---REAVPDPYWKDMVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRD 423
           ++  EL ++ P D++YG + ++L++  R +L W         L ER +   V+ +    +
Sbjct: 117 LTPREL-DMFP-DYRYGWFNTSLILEGRKYLQW---------LTERLTERGVKFFLRKVE 165
Query: 424 SLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH 483
           S         E+V+ G     +        +AG+L  +  +Q   G  + K +    +N 
Sbjct: 166 SF--------EEVARGGADVIINCT---GVWAGVLQPDPLLQPGRG-QIIKVDAPWLKNF 213
Query: 484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543
            +                     D + GIY S  +IP        +Q             
Sbjct: 214 IIT-------------------HDLERGIYNSPYIIPG-------LQA------------ 235
Query: 544 IIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603
                   VTLGGT   GN     +  D   I      + P +  A +   + G RP R 
Sbjct: 236 --------VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRP 287
Query: 604 HVRVERD 610
            VR+ER+
Sbjct: 288 QVRLERE 294

>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate Length = 340

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 152/367 (41%), Gaps = 82/367 (22%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P  +   P
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTS--EP 59
Query: 308 DLETTKEW----IRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
                  W      Y   H     + N G+  ++GYNL    ++   + Y K ++  +++
Sbjct: 60  SNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLF---REAVPDPYWKDMVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRD 423
           ++  EL ++ P D++YG + ++L++  R +L W         L ER +   V+ +    +
Sbjct: 117 LTPREL-DMFP-DYRYGWFNTSLILEGRKYLQW---------LTERLTERGVKFFLRKVE 165
Query: 424 SLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH 483
           S         E+V+ G     +        +AG+L  +  +Q   G  + K +    +N 
Sbjct: 166 SF--------EEVARGGADVIINCT---GVWAGVLQPDPLLQPGRG-QIIKVDAPWLKNF 213
Query: 484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543
            +                     D + GIY S  +IP        +Q             
Sbjct: 214 IIT-------------------HDLERGIYNSPYIIPG-------LQA------------ 235
Query: 544 IIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603
                   VTLGGT   GN     +  D   I      + P +  A +   + G RP R 
Sbjct: 236 --------VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRP 287
Query: 604 HVRVERD 610
            VR+ER+
Sbjct: 288 QVRLERE 294

>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex With Hydroxyquinolin-2(1h) Length = 351

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAGL++P      P
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY--LSDP 59
Query: 308 DLETTKEWIRYSYD----HYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
           +     +W + ++D    H     +EN G+ +I+GYNL     +   +   K  +  +++
Sbjct: 60  NNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLF---HEAIPDPSWKDTVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           ++  EL ++ P D+ YG + ++L++  + +L W  ++
Sbjct: 117 LTPREL-DMFP-DYGYGWFHTSLILEGKNYLQWLTER 151

>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Length = 347

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAGL++P      P
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY--LSDP 59
Query: 308 DLETTKEWIRYSYD----HYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
           +     +W + ++D    H     +EN G+ +I+GYNL     +   +   K  +  +++
Sbjct: 60  NNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLF---HEAIPDPSWKDTVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           ++  EL ++ P D+ YG + ++L++  + +L W  ++
Sbjct: 117 LTPREL-DMFP-DYGYGWFHTSLILEGKNYLQWLTER 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	728
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	8e-27
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	5e-14
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	4e-08
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	5e-25
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	2e-10
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	3e-08
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-06
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	2e-06
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-05
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-05
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	2e-05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	4e-05
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	6e-05
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	9e-05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	1e-04
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-04
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	4e-04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	4e-04
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	4e-04
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	5e-04
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	6e-04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	6e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	8e-04
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	8e-04
3dme_A	369	Conserved exported protein; structural genomics, P	9e-04

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score =  111 bits (279), Expect = 8e-27
 Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP---SP 302
           +M S  +V +LG+G+IGLS+AL L R+     V ++A     D +S   A  +     +P
Sbjct: 2   MMHSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPEDVSSQTFASPWAGANWTP 59

Query: 303 NFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYK 362
                D     +W   ++  +  L+        + G       +     H+ K + P Y+
Sbjct: 60  FMTLTDGPRQAKWEESTFKKWVELVPT-GHAMWLKGTRRFAQNEDGLLGHWYKDITPNYR 118

Query: 363 RMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
            +   E           G+   TL +    +  +  ++
Sbjct: 119 PLPSSECP-----PGAIGVTYDTLSVHAPKYCQYLARE 151

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 73.2 bits (179), Expect = 5e-14
 Identities = 38/184 (20%), Positives = 54/184 (29%), Gaps = 57/184 (30%)

Query: 541 GAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPE------ILAAPVEKV 594
            AYIIP  GG V  GGT   G+  L V+    + IL     + P       I    V + 
Sbjct: 223 PAYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRH 282

Query: 595 WVGLRPYRHH-VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSF 653
            VGLRP R    RVE +        T  P+    G                         
Sbjct: 283 NVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAA-------------------- 322

Query: 654 SELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVS 713
                                         + + + +VH YG    G   + G+A     
Sbjct: 323 ------------------------------KEKEVTLVHAYGFSSAGYQQSWGAAEDVAQ 352

Query: 714 VFEQ 717
           + ++
Sbjct: 353 LVDE 356

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 634 FVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLC--NDMHVIPVRGQTIRI 690
                +  G     + ++S  +     + + N TGLGA+++   +D    P+RGQT+ +
Sbjct: 148 LARELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLV 206

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score =  106 bits (265), Expect = 5e-25
 Identities = 45/157 (28%), Positives = 85/157 (54%), Gaps = 15/157 (9%)

Query: 252 KVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
           +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAGL++P      P
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY--LSDP 59

Query: 308 DLETTKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
           +     +W + ++D+    +    +EN G+ +I+GYNL         +   K  +  +++
Sbjct: 60  NNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEA---IPDPSWKDTVLGFRK 116

Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
           ++  EL      D+ YG + ++L++  + +L W  ++
Sbjct: 117 LTPRELDM--FPDYGYGWFHTSLILEGKNYLQWLTER 151

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 47/280 (16%), Positives = 85/280 (30%), Gaps = 36/280 (12%)

Query: 451 HDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKY 510
             H     +EN G+ +I+GYNL         +   K  +  +++++  EL      D+ Y
Sbjct: 76  LSHVHSPNAENLGLFLISGYNLFHEA---IPDPSWKDTVLGFRKLTPRELDM--FPDYGY 130

Query: 511 GIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYII-------PSYGGLVTLGGTQDYGNA 563
           G + ++L++  + +L W  ++     V+     +             +V   G       
Sbjct: 131 GWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTG---VWAG 187

Query: 564 RLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERD----LTGAAQYLT 619
            L  D    +    +   V    +   +         Y     +       L G  Q   
Sbjct: 188 ALQRDP-LLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGN 246

Query: 620 WYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGL--GARTLCND 677
           W                         I +              I   TG       +  +
Sbjct: 247 WSE--------------LNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLE 292

Query: 678 MHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ 717
              +        ++HNYGHGGYG+T   G A  A  +F +
Sbjct: 293 REQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGR 332

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 15/154 (9%)

Query: 242 ANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 301
           A  + M  +++  ++G GIIG + A  L +   N +  +         T+  AAG+    
Sbjct: 9   ARIRAMKRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGTMGGRTTSAAAGML--G 64

Query: 302 PNFMGPDLETTKEWIRYSYDHYAGLLSE-------NCGVQVINGYNLAKSEKQCAENHYL 354
            +    + +   ++  +S   Y GL  E       +        + LA SE+   +   +
Sbjct: 65  AHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQM 124

Query: 355 KPVLPVYKRMSEEELAEIGPG---DWKYGIYMST 385
             +  V    S+EE+ E  P    D     ++  
Sbjct: 125 DDLDSV-SWYSKEEVLEKEPYASGDIFGASFIQD 157

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 537 VRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWV 596
           +     YI+P   G + +G T   G+     D     +++ +   + P I    V++ W 
Sbjct: 253 LYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWA 312

Query: 597 GLRPY 601
           GLRP 
Sbjct: 313 GLRPG 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 81/604 (13%), Positives = 155/604 (25%), Gaps = 217/604 (35%)

Query: 7   FGVWLIEEFLIGLASGS---HI-KVPGVEMIPVEAFRLV------PHSSGSYIVVDGEVL 56
           F    +++    + S     HI              RL               V +   +
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAV---SGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 57  DYG----PIQAE-IFPGLIERTVTTEYLPPQNR-KEERQGRRKPAVPRTNM------CLE 104
           +Y     PI+ E   P ++    T  Y+  ++R   + Q   K  V R          L 
Sbjct: 90  NYKFLMSPIKTEQRQPSMM----TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 105 KTSPPGGNQTPRPNAY-----KAGALPTILTRKHAVILCSDGKNETFQGSGS---QVSKR 156
           +          RP          G+  T +    A+ +C   K +           +   
Sbjct: 146 EL---------RPAKNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 157 SKVSDLSSETETL--KPSGPLRNEADLSWEVSVSVQQVTQTD-----EKVTPN----LE- 204
           +    +    + L  +      + +D S  + + +  +          K   N    L  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 205 ------IKQLNVQ----VT--------KVNPKSQTNATQNGDKKGL-------FF----- 234
                     N+     +T         ++  + T+ + +     L              
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 235 -----IPTQSCPANPKVMGSNHKVAILGA---------------------GIIGLS-TAL 267
                +P +    NP+       ++I+                        II  S   L
Sbjct: 313 CRPQDLPREVLTTNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 268 ---ELQRRFPNC------------------------DVTVIADKFNMDTTSDGAAGLFEP 300
              E ++ F                           DV V+ +K +          L E 
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-------KYSLVEK 419

Query: 301 SPNFMGPDLETTKEWIRYSYDHYAGLLSENCGV-----QVINGYNLAKSEKQCAENHYLK 355
            P          KE        Y  L  +          +++ YN+ K+      +  + 
Sbjct: 420 QP----------KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS---DDLIP 466

Query: 356 PVLPVY------KRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFL--PWCMQK---DGPS 404
           P L  Y        +   E  E      +  ++         +FL   +  QK   D  +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPE------RMTLF-------RMVFLDFRFLEQKIRHDSTA 513

Query: 405 --NLGERPSTLS-VELY---------HYNR---DSLTVVRGPLHEKVSSGPRTCAMQRAM 449
               G   +TL  ++ Y          Y R     L  +     E +     T  ++ A+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLICSKYTDLLRIAL 572

Query: 450 QHDH 453
             + 
Sbjct: 573 MAED 576

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKF--NMDTTSDGAAGLFEPSPNFMG 306
             V +LG GI GL+ +  L R      V ++  +++    + +       +FE  P  + 
Sbjct: 3   RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIR 62

Query: 307 PDLETTKEWI 316
           P        +
Sbjct: 63  PAGALGARTL 72

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           S+ ++ I+G GI GL+ A   +R FP+ ++T++
Sbjct: 3   SSKRLVIVGGGITGLAAAYYAERAFPDLNITLL 35

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKF--NMDT-TSDGAA 295
            A      S  +VA++GAG+ GL+ A +L+      +VTV     K    + + + DG  
Sbjct: 4   SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLRSVSQDGL- 60

Query: 296 GLFEPSPNFMGPDLETTKEWIR 317
            +++   N M          I 
Sbjct: 61  -IWDEGANTMTESEGDVTFLID 81

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 298
           +  +  + I+GAG  G STAL L RR    +VTV+ D +   +  +  +    + 
Sbjct: 3   VTKSSSLLIVGAGTWGTSTALHLARR-GYTNVTVL-DPYPVPSAISAGNDVNKVI 55

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRF-PNCDVTVI 281
           M  +  V ILGAG  G+  A E++       +VT+I
Sbjct: 1   MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLI 36

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 298
           M  ++ V ++G G +GL+TA ++  R     V V+ ++    N +  + GA   +
Sbjct: 1   MTESYDVVVVGGGPVGLATAWQVAER--GHRVLVL-ERHTFFNENGGTSGAERHW 52

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           K+ ++GAG  GL  A +L++  P   + ++
Sbjct: 2   KILVIGAGPAGLVFASQLKQARPLWAIDIV 31

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           +  + ++AI+GAG  GL+  + L++     D T++
Sbjct: 3   ISKDSRIAIIGAGPAGLAAGMYLEQAG-FHDYTIL 36

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
           + S+  VAI+G G +GL+ A  LQ+     DV+V
Sbjct: 23  LLSDKNVAIIGGGPVGLTMAKLLQQN--GIDVSV 54

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           +  KV ++G G  G + A  ++   P+ +VT+I
Sbjct: 1   AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLI 33

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           +   VA++G GI GL+ A  L+ R    D  ++
Sbjct: 15  TGMNVAVVGGGISGLAVAHHLRSRGT--DAVLL 45

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 248 GSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVI 281
                V I+G GI GL+ A  +++         ++T++
Sbjct: 3   DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLV 40

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 247 MGSNH-KVAILGAGIIGLSTALELQRRFPNCDVTV 280
           M     ++A++G  I GL+ AL L+      DV V
Sbjct: 1   MSPTTDRIAVVGGSISGLTAALMLRDA--GVDVDV 33

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 238 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
                       + K  ++GAGI GLS A+ L++     D  V
Sbjct: 11  HHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQS--GIDCDV 51

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
           M     + I GAGI GLS AL L +      VT+
Sbjct: 1   MSEPIDILIAGAGIGGLSCALALHQA-GIGKVTL 33

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285
           + I+G+G +G +      R     +V +  D  
Sbjct: 5   LIIIGSGSVGAAAGYYATRA--GLNVLMT-DAH 34

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 16/150 (10%), Positives = 50/150 (33%), Gaps = 25/150 (16%)

Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTSDGAAGLFEPSPNFMG 306
           ++  V ++GAG +G++   +L ++       ++   D  + + +  G   +         
Sbjct: 2   THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRII----RHAY 55

Query: 307 PDLETTKEWIRYSYDHYAGLLSENCGVQVI--NGYNLAKSEKQCAENHYLKPVLPV---- 360
            +          S + +   L +    ++    G  +   +    E+ ++   +      
Sbjct: 56  GEGREYVPLALRSQELWYE-LEKETHHKIFTKTGVLVFGPK---GESAFVAETMEAAKEH 111

Query: 361 ---YKRMSEEELAEIGPG----DWKYGIYM 383
                 +  +E+ +  PG    +    I+ 
Sbjct: 112 SLTVDLLEGDEINKRWPGITVPENYNAIFE 141

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           +H V +LG G  GL +A ELQ+      VTV+
Sbjct: 11  SHSVVVLGGGPAGLCSAFELQKA--GYKVTVL 40

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTS 291
           M ++    ++GAG++GL+ A  L       +V V   A+     T+S
Sbjct: 1   MSTDIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSS 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	728
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	100.0
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.98
3dme_A	369	Conserved exported protein; structural genomics, P	99.97
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.97
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.97
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.97
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.96
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.96
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.96
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.96
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.95
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.95
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.94
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.93
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.92
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.92
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.92
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.92
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.89
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.86
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.8
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.57
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.51
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.44
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.28
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.23
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.23
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.22
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.16
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.13
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.9
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.81
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.81
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.8
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.77
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.76
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.76
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.74
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.72
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.71
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.7
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.69
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.69
3atr_A	453	Conserved archaeal protein; saturating double bond	97.68
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.68
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.67
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.66
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.66
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.61
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.61
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.58
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.57
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.56
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.55
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.53
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.52
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.51
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.51
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.5
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.48
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.48
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.48
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.47
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.47
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.47
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.46
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.45
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.45
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.45
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.45
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.45
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.44
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.44
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.44
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.43
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.43
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.4
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.4
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.37
4dna_A	463	Probable glutathione reductase; structural genomic	97.36
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.36
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.35
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.35
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.34
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.33
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.33
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.32
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.32
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.32
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.32
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.31
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.27
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.27
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.24
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.24
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.21
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.21
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.2
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.19
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.19
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.19
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.19
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.18
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.17
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.15
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.15
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.13
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.13
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.13
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.13
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.12
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.12
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.09
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.08
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.08
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.08
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.08
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.07
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.07
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.06
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.04
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.04
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.02
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	97.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.99
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.99
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.95
2bry_A	497	NEDD9 interacting protein with calponin homology a	96.91
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.9
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.89
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.89
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.89
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	96.89
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.88
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.87
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.84
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.81
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.8
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.79
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.79
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.78
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.77
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.75
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.75
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.74
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.74
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.72
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.71
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.71
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.69
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.68
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.67
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.65
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.64
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.63
3s40_A	304	Diacylglycerol kinase; structural genomics, the ce	96.62
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.61
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.61
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.61
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.59
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.59
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.59
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.58
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.55
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.55
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.51
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.51
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.49
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.47
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.44
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.43
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.43
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.42
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.39
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.38
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.37
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.37
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.33
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.31
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.28
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.27
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.27
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.2
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.2
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.2
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.1
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.1
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.03
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.01
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.98
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.97
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.96
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.94
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	95.9
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.87
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.87
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.87
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.85
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.72
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.65
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.57
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.56
2bon_A	332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	95.51
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.47
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.42
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.29
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.29
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.18
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.09
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.71
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	94.48
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.65
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.3
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.29
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.28
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.19
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.05
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.03
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.91
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.59
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.49
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	92.36
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.08
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.08
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.94
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.87
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.63
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.26
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.2
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	91.13
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	91.04
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	90.84
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.83
3tl2_A	315	Malate dehydrogenase; center for structural genomi	90.82
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.81
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.74
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	90.74
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.7
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.6
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	90.37
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	90.34
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.32
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.25
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.23
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.14
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	89.99
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	89.98
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	89.96
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.86
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.81
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	89.6
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	89.59
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	89.55
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.48
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	89.47
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	89.38
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	89.19
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	89.04
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	88.9
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	88.83
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.81
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	88.75
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	88.66
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	88.64
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	88.63
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	88.61
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	88.61
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	88.45
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	88.31
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.19
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	88.12
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	87.99
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	87.93
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.93
4ezb_A	317	Uncharacterized conserved protein; structural geno	87.93
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	87.81
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	87.67
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	87.62
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	87.57
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.38
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	87.35
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	87.32
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	87.21
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	87.2
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	86.99
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	86.98
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	86.83
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.81
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	86.8
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	86.35
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	86.34
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	86.22
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	86.2
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.2
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	86.1
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	85.93
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	85.9
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	85.88
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	85.81
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	85.72
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	85.54
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	85.44
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	85.44
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	85.4
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	85.38
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	85.35
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.18
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	85.06
1ojt_A	482	Surface protein; redox-active center, glycolysis,	85.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	84.94
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	84.9
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	84.83
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	84.82
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	84.81
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	84.75
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	84.72
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	84.72
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	84.65
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	84.56
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	84.5
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	84.48
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	84.45
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	84.28
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	84.23
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	84.23
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	84.03
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	83.97
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	83.78
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	83.76
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	83.75
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	83.72
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	83.72
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	83.69
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	83.6
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	83.58
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	83.45
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	83.43
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	83.36
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	83.29
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	83.21
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	83.19
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	83.19
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	83.12
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	83.06
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	83.04
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	83.01
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	83.01
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	82.92
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	82.76
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	82.75
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	82.73
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	82.6
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	82.57
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	82.38
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	82.26
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	82.24
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	82.23
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	82.22
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	82.19
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	82.12
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	82.04
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	82.01
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	81.98
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	81.95
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	81.9
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	81.89
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	81.8
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	81.6
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	81.59
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	81.55
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	81.46
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	81.42
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	81.37
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	81.37
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	81.34
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	81.22
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	81.12
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	81.12
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	81.1
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	80.9
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	80.89
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	80.85
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	80.81
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	80.8
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.78
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	80.66
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	80.65
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	80.55
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	80.54
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	80.51
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	80.37
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	80.25
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	80.12
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	80.08
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	80.04
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	80.03

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=100.00  E-value=6.8e-37  Score=330.49  Aligned_cols=327  Identities=27%  Similarity=0.451  Sum_probs=246.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC------CcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN------CDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA  324 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G------~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~  324 (728)
                      +||+|||||++||++||+|++  +|      ++|+|||++.++.++|++++|++.+.  ..........+|+..+++.|.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~--~G~~~~p~~~V~vlE~~~~~~~aS~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~   76 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHE--RYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY--LSDPNNPQEADWSQQTFDYLL   76 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HHTTTSSSCEEEEEESSCGGGSGGGTCCCBCCCC--SSCCSCTHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHH--hccccCCCceEEEEECCCCCCCccccCcceeecc--cCCCchHHHHHHHHHHHHHHH
Confidence            389999999999999999999  66      89999999998899999999999983  222234467788999999998


Q ss_pred             ccccc----ccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceeccccc
Q psy16975        325 GLLSE----NCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK  400 (728)
Q Consensus       325 ~l~~~----~~Gv~~~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L~~~  400 (728)
                      ++...    .+++....|+.++.++++   ..++.+.+.++++++++|+. .+| ....|++++++++||..++.+|++.
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~e~~-~~p-~~~~~~~~~~~~v~p~~~~~~l~~~  151 (351)
T 3g3e_A           77 SHVHSPNAENLGLFLISGYNLFHEAIP---DPSWKDTVLGFRKLTPRELD-MFP-DYGYGWFHTSLILEGKNYLQWLTER  151 (351)
T ss_dssp             TTTTSTTHHHHTEEEEEEEEEESSCCC---CCGGGGTSEEEEECCHHHHT-TCT-TCCEEEEEEEEEECHHHHHHHHHHH
T ss_pred             HHhhccCCCCccEEEEEEEEEecCCcc---ccCHHHhCCCceECCHHHhc-cCC-CCceEEEecceEEcHHHHHHHHHHH
Confidence            87752    234445667766544332   34566678889999999994 588 5778888889999999999999999


Q ss_pred             CCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhh
Q psy16975        401 DGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCA  480 (728)
Q Consensus       401 a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~  480 (728)
                      ++  ++|       ++|++ +++          .         +++.. ....++  .||+|+     |+   |+..|++
T Consensus       152 ~~--~~G-------v~i~~-~~V----------~---------~i~~~-~~~~a~--~VV~A~-----G~---~s~~l~~  191 (351)
T 3g3e_A          152 LT--ERG-------VKFFQ-RKV----------E---------SFEEV-AREGAD--VIVNCT-----GV---WAGALQR  191 (351)
T ss_dssp             HH--HTT-------CEEEE-CCC----------C---------CHHHH-HHTTCS--EEEECC-----GG---GGGGTSC
T ss_pred             HH--HCC-------CEEEE-EEe----------C---------CHHHh-hcCCCC--EEEECC-----Cc---ChHhhcC
Confidence            98  888       66666 541          1         12211 012456  999999     99   9998875


Q ss_pred             hcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEecccccc
Q psy16975        481 ENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDY  560 (728)
Q Consensus       481 ~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~e~  560 (728)
                      +    .++.|+|||++.++..                    ....+.+...  +....+...|++|+.+ ++++|++.+.
T Consensus       192 ~----~~l~p~rg~~~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~y~~p~~~-~~~iGg~~~~  244 (351)
T 3g3e_A          192 D----PLLQPGRGQIMKVDAP--------------------WMKHFILTHD--PERGIYNSPYIIPGTQ-TVTLGGIFQL  244 (351)
T ss_dssp             C----TTCEEEEEEEEEEECT--------------------TCCSEEEECC--TTTCTTCSCEEEECSS-CEEEECCCEE
T ss_pred             C----CceeecCCcEEEEeCC--------------------CcceEEEecc--ccCCCCceeEEEeCCC-cEEEeeeeec
Confidence            3    6789999996421110                    0000110000  0000134689999988 7999999998


Q ss_pred             CcccccccccchhhhhhcccccccccccccceeeeeecccccceeeeeeccccccceeeeeeeeEEeceeEEEEEeeecc
Q psy16975        561 GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKA  640 (728)
Q Consensus       561 ~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~  640 (728)
                      .+++..++++..+.+++.+.+++|.|.+.++.+.|+|+||+|+|.+++.+.++..                         
T Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~t~D~p~~~~~ig~~-------------------------  299 (351)
T 3g3e_A          245 GNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTG-------------------------  299 (351)
T ss_dssp             TCCCCSCCHHHHHHHHHHHHHHCGGGGGCEEEEEEEEEEEECSSCEEEEEEECCS-------------------------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCccCCcEeeeeEeeCCCCCCccceeeeccCC-------------------------
Confidence            8888888999999999999999999999999999999999999966654333210                         


Q ss_pred             cCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeecccc
Q psy16975        641 AGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHK  720 (728)
Q Consensus       641 ~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~~  720 (728)
                                                                  ...-.||+++||+|+|+++||++|+.+++++.+.++
T Consensus       300 --------------------------------------------~~~~~~~~~~G~~g~G~~~ap~~g~~la~li~~~~~  335 (351)
T 3g3e_A          300 --------------------------------------------PSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILE  335 (351)
T ss_dssp             --------------------------------------------SSCEEEEEEECCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------CCCCeEEEEeCCCcchHhhhHHHHHHHHHHHHHHHH
Confidence                                                        012348999999999999999999999999999877


Q ss_pred             cc
Q psy16975        721 AS  722 (728)
Q Consensus       721 ~~  722 (728)
                      +.
T Consensus       336 ~~  337 (351)
T 3g3e_A          336 EK  337 (351)
T ss_dssp             HT
T ss_pred             hc
Confidence            53

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.98  E-value=6.6e-34  Score=308.51  Aligned_cols=343  Identities=22%  Similarity=0.297  Sum_probs=238.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccccc-----CCCCccccccCCCCCCCCCchhhhhhhhhccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT-----TSDGAAGLFEPSPNFMGPDLETTKEWIRYSYD  321 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~g-----AS~~agGii~p~~~l~~~~~~~~~~~~~~s~~  321 (728)
                      |.+++||+|||||++|+++||+|++  +|++|+|||++.++.+     +|.+++|.+.+....  .......++..++++
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~--~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~   78 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTL--TDGPRQAKWEESTFK   78 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCT--TTCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccCCCCcCCcCcccCcccccccCcccC--CCchHHHHHHHHHHH
Confidence            5567899999999999999999999  8999999999887765     455677777763211  123467778888888


Q ss_pred             ccccccccc-cccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceeccccc
Q psy16975        322 HYAGLLSEN-CGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK  400 (728)
Q Consensus       322 ~~~~l~~~~-~Gv~~~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L~~~  400 (728)
                      .|.++.. + .++.+...+.++.++.+ ....++++.+.++++++++++    | ....|+++.++++||..++.+|++.
T Consensus        79 ~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~l~~~~~----p-~~~~g~~~~~~~v~p~~~~~~l~~~  151 (363)
T 1c0p_A           79 KWVELVP-TGHAMWLKGTRRFAQNEDG-LLGHWYKDITPNYRPLPSSEC----P-PGAIGVTYDTLSVHAPKYCQYLARE  151 (363)
T ss_dssp             HHHHHTT-TTSSEEEEEEEEEESSGGG-GGGGTTTTTSTTCEECCGGGS----S-TTCEEEEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHhCc-ccCCeEEECCEEEEecCcc-chhHHHHHhCCCcEECCHHHC----C-CceEEEEEecceecHHHHHHHHHHH
Confidence            8888763 5 67765444433332222 223455667788899998876    4 3456777777999999999999999


Q ss_pred             CCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhh
Q psy16975        401 DGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCA  480 (728)
Q Consensus       401 a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~  480 (728)
                      ++  ++|       ++|++ +++          ..+...        .  . .++  .||+|+     |.   |+..|+.
T Consensus       152 ~~--~~G-------~~i~~-~~v----------~~l~~~--------~--~-~a~--~VV~A~-----G~---~s~~l~~  190 (363)
T 1c0p_A          152 LQ--KLG-------ATFER-RTV----------TSLEQA--------F--D-GAD--LVVNAT-----GL---GAKSIAG  190 (363)
T ss_dssp             HH--HTT-------CEEEE-CCC----------SBGGGT--------C--S-SCS--EEEECC-----GG---GGGTSBT
T ss_pred             HH--HCC-------CEEEE-EEc----------ccHhhc--------C--c-CCC--EEEECC-----Cc---chhhccC
Confidence            98  888       77766 551          112110        1  1 455  999999     99   9998876


Q ss_pred             hcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHH-HhhceeeeecCCceEEeccccc
Q psy16975        481 ENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLV-RLAGAYIIPSYGGLVTLGGTQD  559 (728)
Q Consensus       481 ~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i-~~~~~YiiP~~dG~vviGgt~e  559 (728)
                      ..  ..+++|+|||++                     .+++....+.+.      .+ .....|++|+.+|++++|++.+
T Consensus       191 ~~--~~~~~p~rg~~~---------------------~~~~~~~~~~~~------~~~~~~~~y~~p~~~g~~~iG~t~~  241 (363)
T 1c0p_A          191 ID--DQAAEPIRGQTV---------------------LVKSPCKRCTMD------SSDPASPAYIIPRPGGEVICGGTYG  241 (363)
T ss_dssp             TC--CTTEEEEEEEEE---------------------EEECCCCCCEEE------CSCTTCCEEEEEETTTEEEEECCCE
T ss_pred             cc--cCCccccCCeEE---------------------EEeCCcccceEe------eccCCCcEEEEEcCCCEEEEEeeec
Confidence            53  378999999964                     121110011000      01 1234899999999999999999


Q ss_pred             cCcccccccccchhhhhhccccccccc------ccccceeeeeecccccce-eeeeeccccccceeeeeeeeEEeceeEE
Q psy16975        560 YGNARLGVDRFDSRAILNRTAAVRPEI------LAAPVEKVWVGLRPYRHH-VRVERDLTGAAQYLTWYPVFKVYGITSV  632 (728)
Q Consensus       560 ~~~~d~~~~~~~~~~ll~~~~~l~P~L------~~~~I~~~waGlRP~tpd-~Rie~e~~~~~~~~~~l~~~~~~G~~~~  632 (728)
                      ..+++..++.+..+.+++++.+++|.|      .+.++++.|+|+||+|+| .++..+.++.+.                
T Consensus       242 ~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~i~~~w~G~rp~t~d~~piig~~~~~~~----------------  305 (363)
T 1c0p_A          242 VGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPARRGGPRVEAERIVLPL----------------  305 (363)
T ss_dssp             ETCCCCSCCHHHHHHHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEEETTSCEEEEEEEEESC----------------
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCccccCCcccccceEeeceEEECCCCCCCceeEEEeccccc----------------
Confidence            888888888899999999999999999      568999999999999999 554332110000                


Q ss_pred             EEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCce-EEEEeecccCccccccCCCCceee
Q psy16975        633 LFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQT-IRIVHNYGHGGYGVTSAPGSARCA  711 (728)
Q Consensus       633 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~-~~v~h~yGhgg~G~t~s~g~A~~~  711 (728)
                           ....+             .. +...|+                -+..+.. -.||+++||+|.|+++||++|+.+
T Consensus       306 -----~~~~~-------------~~-d~~~~~----------------g~~p~~~~~~~~~a~G~~g~G~~~a~~~g~~~  350 (363)
T 1c0p_A          306 -----DRTKS-------------PL-SLGRGS----------------ARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDV  350 (363)
T ss_dssp             -----CTTTC-------------TT-CSSCTT----------------CCCSCCEEEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             -----ccccC-------------cc-cccccc----------------ccccccccceEEEecCCCCcchheeccHHHHH
Confidence                 00000             00 000000                0111211 358999999999999999999999


Q ss_pred             eeeeeccccc
Q psy16975        712 VSVFEQSHKA  721 (728)
Q Consensus       712 ~~l~~~~~~~  721 (728)
                      ++|+.+.++.
T Consensus       351 a~li~~~l~~  360 (363)
T 1c0p_A          351 AQLVDEAFQR  360 (363)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.97  E-value=1.5e-33  Score=303.30  Aligned_cols=300  Identities=12%  Similarity=0.089  Sum_probs=211.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc-cccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      +.++||+|||||++|+++|++|++  +|++|+|||++ .++.++|+.++|++.+....  +......+++..+.+.|.++
T Consensus         2 ~~~~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~~~~~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   77 (369)
T 3dme_A            2 STDIDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYY--PADSLKARLCVRGKHLLYEY   77 (369)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSCSTTSSSCCEECCCCSS--CTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCccCcCCccccccCccC--CCCCHhHHHHHHHHHHHHHH
Confidence            456899999999999999999999  99999999998 57889999999999875322  22234556777777777766


Q ss_pred             cccccccEE-Ecccc-cccchhhhhh----cccccccchh-ccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceecc
Q psy16975        327 LSENCGVQV-INGYN-LAKSEKQCAE----NHYLKPVLPV-YKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWC  397 (728)
Q Consensus       327 ~~~~~Gv~~-~~G~~-~a~~~~~~~~----~~~~~~~g~~-~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L  397 (728)
                      .. +.++.+ ..|.+ ++.++++.+.    .......+.+ +++++.+++.+++|. ....+++++ +++++|..++.+|
T Consensus        78 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l  156 (369)
T 3dme_A           78 CA-ARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAY  156 (369)
T ss_dssp             HH-HHTCCEECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHH
T ss_pred             HH-HcCCCcccCCEEEEecCHHHHHHHHHHHHHHHHcCCCceeecCHHHHHHhCCCceeeeeeECCCCEEECHHHHHHHH
Confidence            63 445544 34543 3443333221    1223345665 889999999998886 345567776 5899999999999


Q ss_pred             cccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhh-ccccccccccccccEEEcccccccc
Q psy16975        398 MQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQ-HDHYAGLLSENCGVQVINGYNLAKS  475 (728)
Q Consensus       398 ~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~-~g~ada~~VVnAa~~viaG~~~~~S  475 (728)
                      ++.++  ++|       ++|+++++ +++...++..          +.+.+... .....++.||+|+     |.   |+
T Consensus       157 ~~~~~--~~G-------v~i~~~~~v~~i~~~~~~~----------~~v~~~~g~~~~~~a~~VV~A~-----G~---~s  209 (369)
T 3dme_A          157 QGDAE--SDG-------AQLVFHTPLIAGRVRPEGG----------FELDFGGAEPMTLSCRVLINAA-----GL---HA  209 (369)
T ss_dssp             HHHHH--HTT-------CEEECSCCEEEEEECTTSS----------EEEEECTTSCEEEEEEEEEECC-----GG---GH
T ss_pred             HHHHH--HCC-------CEEECCCEEEEEEEcCCce----------EEEEECCCceeEEEeCEEEECC-----Cc---ch
Confidence            99998  888       89999888 4454332211          11222200 0133344999999     99   99


Q ss_pred             hhhhhhc-ccc----cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHH-HHHhhceeeeecCC
Q psy16975        476 EKQCAEN-HYL----KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFAS-LVRLAGAYIIPSYG  549 (728)
Q Consensus       476 ~~L~~~~-gi~----lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~-~i~~~~~YiiP~~d  549 (728)
                      ..|++.. ++.    .++.|.|||++.                     ++.  ..| +....+.. .......++.+..+
T Consensus       210 ~~l~~~~~g~~~~~~~~i~p~rG~~~~---------------------~~~--~~~-~~~~~~~~p~~~~~~~~~~~~~~  265 (369)
T 3dme_A          210 PGLARRIEGIPRDSIPPEYLCKGSYFT---------------------LAG--RAP-FSRLIYPVPQHAGLGVHLTLDLG  265 (369)
T ss_dssp             HHHHHTEETSCGGGSCCCEEEEEEEEE---------------------CSS--SCS-CSSEEEECTTCSSCCCCEEECTT
T ss_pred             HHHHHHhcCCCccccceeeecceEEEE---------------------ECC--CCc-cCceeecCCCCCCceEEEeCccC
Confidence            9998877 642    468999999532                     110  001 00000000 00012466777888


Q ss_pred             ceEEecccccc-Ccccccccccchhhhhhcccccccccccccceeeeeecccccc
Q psy16975        550 GLVTLGGTQDY-GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH  603 (728)
Q Consensus       550 G~vviGgt~e~-~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tp  603 (728)
                      |++++|++.+. ++++..++++..+.+++.+.+++|.|.+.++.+.|+|+||.++
T Consensus       266 g~~~iG~t~e~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~~~  320 (369)
T 3dme_A          266 GQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKIS  320 (369)
T ss_dssp             SCEEECCCCEEESSCCCCCCGGGGGGHHHHHHTTCTTCCTTCCEEEEEEEEEESS
T ss_pred             CcEEECCCcccccccccccCHHHHHHHHHHHHHHCCCCChhhceecceecccccc
Confidence            99999999987 6788899999999999999999999999999999999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.3e-33  Score=307.33  Aligned_cols=332  Identities=14%  Similarity=0.144  Sum_probs=240.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      |..++||+|||||++|+++|++|++  +|++|+|||++.++.++|+.++|++++..  .   .....++..++.+.|.++
T Consensus         2 m~~~~dVvIIGgGi~Gl~~A~~La~--~G~~V~lle~~~~~~gas~~~~g~~~~~~--~---~~~~~~l~~~~~~~~~~l   74 (382)
T 1y56_B            2 LPEKSEIVVIGGGIVGVTIAHELAK--RGEEVTVIEKRFIGSGSTFRCGTGIRQQF--N---DEANVRVMKRSVELWKKY   74 (382)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSHHHHCCCCCCCCC--S---SHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCccccccCeeeecC--C---ChHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999  89999999999888899999999998842  1   223456666777777666


Q ss_pred             cccccccEE-Eccccc-ccchhhhh----hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCcccee
Q psy16975        327 LSENCGVQV-INGYNL-AKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLP  395 (728)
Q Consensus       327 ~~~~~Gv~~-~~G~~~-a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~  395 (728)
                      .+ +.++.+ ..|.++ +.++++.+    ....++..+.++++++++++.+++|.    ....+++++ ++++||..++.
T Consensus        75 ~~-~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (382)
T 1y56_B           75 SE-EYGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATT  153 (382)
T ss_dssp             HH-HHTCCEECCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHH
T ss_pred             HH-HhCCCeeccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHH
Confidence            53 333333 445433 33333322    12333456777899999999988874    234566666 59999999999


Q ss_pred             cccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccccc
Q psy16975        396 WCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAK  474 (728)
Q Consensus       396 ~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~  474 (728)
                      +|.+.++  ++|       ++|+++++ +++....+          ++.+|.+.  .+...++.||+|+     |.   |
T Consensus       154 ~l~~~~~--~~G-------v~i~~~~~v~~i~~~~~----------~v~gv~~~--~g~i~a~~VV~A~-----G~---~  204 (382)
T 1y56_B          154 AFAVKAK--EYG-------AKLLEYTEVKGFLIENN----------EIKGVKTN--KGIIKTGIVVNAT-----NA---W  204 (382)
T ss_dssp             HHHHHHH--HTT-------CEEECSCCEEEEEESSS----------BEEEEEET--TEEEECSEEEECC-----GG---G
T ss_pred             HHHHHHH--HCC-------CEEECCceEEEEEEECC----------EEEEEEEC--CcEEECCEEEECc-----ch---h
Confidence            9999998  888       89998888 44443222          22223333  2333444999999     99   9


Q ss_pred             chhhhhhcccc--cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhc-ccchHHHHH-h-hceeeeecCC
Q psy16975        475 SEKQCAENHYL--KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCM-QKNFASLVR-L-AGAYIIPSYG  549 (728)
Q Consensus       475 S~~L~~~~gi~--lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~-~~~~~~~i~-~-~~~YiiP~~d  549 (728)
                      +..|....+..  +|+.|.|||++                     .+++  ..++.. +    .++. . ...|++|..+
T Consensus       205 s~~l~~~~g~~~~~~~~~~~g~~~---------------------~~~~--~~~~~~~~----~~~~~~~~~~y~~p~~~  257 (382)
T 1y56_B          205 ANLINAMAGIKTKIPIEPYKHQAV---------------------ITQP--IKRGTINP----MVISFKYGHAYLTQTFH  257 (382)
T ss_dssp             HHHHHHHHTCCSCCCCEEEEEEEE---------------------EECC--CSTTSSCS----EEEESTTTTEEEECCSS
T ss_pred             HHHHHHHcCCCcCcCCCeeEeEEE---------------------EEcc--CCcccCCC----eEEecCCCeEEEEEeCC
Confidence            98888777766  78999999953                     1211  111111 1    0111 2 4689999999


Q ss_pred             ceEEecc-c-cccCcccccccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeeeE
Q psy16975        550 GLVTLGG-T-QDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFK  625 (728)
Q Consensus       550 G~vviGg-t-~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~  625 (728)
                      | +++|+ + .+..+++..++.+..+.+++.+.+++|.|.+.++.+.|+|+||+++|  +.|...               
T Consensus       258 g-~~iG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~g~r~~t~d~~p~ig~~---------------  321 (382)
T 1y56_B          258 G-GIIGGIGYEIGPTYDLTPTYEFLREVSYYFTKIIPALKNLLILRTWAGYYAKTPDSNPAIGRI---------------  321 (382)
T ss_dssp             S-CCEEECSCCBSSCCCCCCCHHHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEECTTSCCEEEEE---------------
T ss_pred             e-EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcCCCCceEEEEeccccCCCCCcEeccC---------------
Confidence            8 99994 4 44456677788888999999999999999999999999999999999  333210               


Q ss_pred             EeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEe-ecCceEEEEeecccCccccccC
Q psy16975        626 VYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIP-VRGQTIRIVHNYGHGGYGVTSA  704 (728)
Q Consensus       626 ~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~-~~g~~~~v~h~yGhgg~G~t~s  704 (728)
                                                                              | .+|    +++++||+|.|+++|
T Consensus       322 --------------------------------------------------------~~~~~----~~~~~G~~g~G~~~a  341 (382)
T 1y56_B          322 --------------------------------------------------------EELND----YYIAAGFSGHGFMMA  341 (382)
T ss_dssp             --------------------------------------------------------SSSBT----EEEEECCTTCHHHHH
T ss_pred             --------------------------------------------------------CCCCC----EEEEEecCcchHhhh
Confidence                                                                    1 123    789999999999999


Q ss_pred             CCCceeeeeeeecc
Q psy16975        705 PGSARCAVSVFEQS  718 (728)
Q Consensus       705 ~g~A~~~~~l~~~~  718 (728)
                      |++|+.+++++.+.
T Consensus       342 ~~~g~~la~~i~~~  355 (382)
T 1y56_B          342 PAVGEMVAELITKG  355 (382)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.97  E-value=4.9e-33  Score=301.31  Aligned_cols=332  Identities=12%  Similarity=0.098  Sum_probs=234.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc-cccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      ..++||+|||||++||++||+|++   |++|+|||++ .++.++|+.++|++++..  .   .....++...+.+.|.++
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La~---G~~V~vlE~~~~~g~~as~~~~g~~~~~~--~---~~~~~~l~~~~~~~~~~~   78 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLSA---HGRVVVLEREAQPGYHSTGRSAAHYTVAY--G---TPQVRALTAASRAFFDNP   78 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSSSTTSSGGGSCCCEECSSS--S---CHHHHHHHHHHHHHHHSC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHhC---CCCEEEEECCCCccccccccccceeeccc--C---CHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999994   8999999998 578899999999998842  1   235667777777777776


Q ss_pred             ccccc-c--cEEEcccccccchhhhh----hcccccccchhccccCHHHHhhcCCC-C---cceeEeEE-eeeecCccce
Q psy16975        327 LSENC-G--VQVINGYNLAKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG-D---WKYGIYMS-TLVIPNRIFL  394 (728)
Q Consensus       327 ~~~~~-G--v~~~~G~~~a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~-~---~~~G~~~~-~g~idp~~ll  394 (728)
                      .+ .. +  .....|.+.....++.+    ....++..+.++++++++++.+++|. .   ...+++++ ++++||..++
T Consensus        79 ~~-~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~  157 (381)
T 3nyc_A           79 PA-GFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALH  157 (381)
T ss_dssp             CT-TSCSSCSEEECCEEEECSSCCHHHHHHHHHHHHHHCTTCEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHH
T ss_pred             hh-hhCCcccccccceEEEechHHHHHHHHHHHHHHHcCCCcEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHH
Confidence            53 22 1  12345654322222211    12334456778899999999998886 1   34567776 5999999999


Q ss_pred             ecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccc
Q psy16975        395 PWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLA  473 (728)
Q Consensus       395 ~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~  473 (728)
                      .+|++.++  ++|       ++|+++++ +++....+.           +.|.+.  .+...++.||+|+     |.   
T Consensus       158 ~~l~~~a~--~~G-------v~i~~~~~V~~i~~~~~~-----------~~V~t~--~g~i~a~~VV~A~-----G~---  207 (381)
T 3nyc_A          158 QGYLRGIR--RNQ-------GQVLCNHEALEIRRVDGA-----------WEVRCD--AGSYRAAVLVNAA-----GA---  207 (381)
T ss_dssp             HHHHHHHH--HTT-------CEEESSCCCCEEEEETTE-----------EEEECS--SEEEEESEEEECC-----GG---
T ss_pred             HHHHHHHH--HCC-------CEEEcCCEEEEEEEeCCe-----------EEEEeC--CCEEEcCEEEECC-----Ch---
Confidence            99999998  888       99999988 555543322           123333  3333444999999     99   


Q ss_pred             cchhhhhhcccc-cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceE
Q psy16975        474 KSEKQCAENHYL-KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLV  552 (728)
Q Consensus       474 ~S~~L~~~~gi~-lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~v  552 (728)
                      |+..|++..++. +++.|+|||++..+...    ..         .   ....|.+.       ..+...|++|.. |++
T Consensus       208 ~s~~l~~~~g~~~~~~~p~rg~~~~~~~~~----~~---------~---~~~~p~~~-------~~~~~~y~~p~~-g~~  263 (381)
T 3nyc_A          208 WCDAIAGLAGVRPLGLQPKRRSAFIFAPPP----GI---------D---CHDWPMLV-------SLDESFYLKPDA-GML  263 (381)
T ss_dssp             GHHHHHHHHTCCCCCCEEEEEEEEEECCCT----TC---------C---CTTCCEEE-------ETTSSCEEEEET-TEE
T ss_pred             hHHHHHHHhCCCCCceeeeEEEEEEECCCc----CC---------C---cCccceEE-------eCCCCEEEEeCC-CcE
Confidence            999998887754 58999999964211100    00         0   00001110       013568999998 889


Q ss_pred             Eecccccc--Ccccccccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeeeEEec
Q psy16975        553 TLGGTQDY--GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYG  628 (728)
Q Consensus       553 viGgt~e~--~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G  628 (728)
                      ++|++.+.  ..++..++....+.+++++.. +|.+.+.++.+.|+|+||+|+|  +.|...                  
T Consensus       264 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~w~G~r~~t~D~~p~ig~~------------------  324 (381)
T 3nyc_A          264 LGSPANADPVEAHDVQPEQLDIATGMYLIEE-ATTLTIRRPEHTWAGLRSFVADGDLVAGYA------------------  324 (381)
T ss_dssp             EEECCCCEECCSSCCCCCHHHHHHHHHHHHH-HBSCCCCCCSEEEEEEEEECTTSCCEEEEC------------------
T ss_pred             EEeCCcCCCCCcccCCCChHHHHHHHHHHHh-cCCCcccceeeeeEEccccCCCCCceecCC------------------
Confidence            99999865  234555666667788888765 6888888999999999999999  333210                  


Q ss_pred             eeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEe-ecCceEEEEeecccCccccccCCCC
Q psy16975        629 ITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIP-VRGQTIRIVHNYGHGGYGVTSAPGS  707 (728)
Q Consensus       629 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~-~~g~~~~v~h~yGhgg~G~t~s~g~  707 (728)
                                                                           | ..|    ||+++||+|+|+++||++
T Consensus       325 -----------------------------------------------------~~~~~----l~~a~G~~g~G~~~ap~~  347 (381)
T 3nyc_A          325 -----------------------------------------------------ANAEG----FFWVAAQGGYGIQTSAAM  347 (381)
T ss_dssp             -----------------------------------------------------TTSTT----EEEEECCTTCTTTTHHHH
T ss_pred             -----------------------------------------------------CCCCC----eEEEEcCCChhHhhCHHH
Confidence                                                                 0 122    799999999999999999


Q ss_pred             ceeeeeeeecc
Q psy16975        708 ARCAVSVFEQS  718 (728)
Q Consensus       708 A~~~~~l~~~~  718 (728)
                      |+.++++|.+.
T Consensus       348 g~~la~~i~g~  358 (381)
T 3nyc_A          348 GEASAALIRHQ  358 (381)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhCC
Confidence            99999999764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.97  E-value=1.7e-32  Score=323.36  Aligned_cols=342  Identities=17%  Similarity=0.138  Sum_probs=228.7

Q ss_pred             ceEEEEEEEEeeecccccCcccceeeeeEEEEEeCCCCCccccccCCceeeEEeecC-------CCCCCCccccCcceEE
Q psy16975        182 SWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQ-------SCPANPKVMGSNHKVA  254 (728)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~-------~~~~~~~~~~~~~dVv  254 (728)
                      .+.+..|...||+.+.++||.++.       ++         +. +.++.+..+...       ..+..+......+||+
T Consensus       206 ~~~t~~~~~~vr~~l~~aGf~~~~-------~~---------~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVv  268 (689)
T 3pvc_A          206 TFSTFTAAGFVRRGLQQAGFNVTK-------VK---------GF-GQKREMLTGTLPQQIHAPTAPWYHRPAATRCDDIA  268 (689)
T ss_dssp             EEEESCCCHHHHHHHHHTTCEEEE-------EE---------CS-SSSCEEEEEECCSCCCCCCCGGGCCCCCSCCSSEE
T ss_pred             EEEeccCcHHHHHHHHhCCeEEEe-------cc---------CC-CccccccccccccccccccCCCccCcccCCCCCEE
Confidence            555666778999999999998873       33         11 223333333221       0111111123468999


Q ss_pred             EeecceechhhHHHhhhhCCCCcEEEeecc-cccccCCCCccccccCCCCCCCCCchhhhhhh----hhccccccccccc
Q psy16975        255 ILGAGIIGLSTALELQRRFPNCDVTVIADK-FNMDTTSDGAAGLFEPSPNFMGPDLETTKEWI----RYSYDHYAGLLSE  329 (728)
Q Consensus       255 VIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~----~~s~~~~~~l~~~  329 (728)
                      |||||++|+++|++|++  +|++|+|||++ .++.++|+.++|++.+...  .. .....++.    ..+.+.|.++...
T Consensus       269 IIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~--~~-~~~~~~~~~~~~~~a~~~~~~l~~~  343 (689)
T 3pvc_A          269 IIGGGIVSALTALALQR--RGAVVTLYCADAQPAQGASGNRQGALYPLLN--GK-NDALETFFTSAFTFARRQYDQLLEQ  343 (689)
T ss_dssp             EECCSHHHHHHHHHHHT--TTCCEEEEESSSSTTCSGGGCSCEEECCCCC--SS-CSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCcHHHHHHHHHHHH--CCCcEEEEeCCCccccccccccCCEEecCCC--CC-ChHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999  99999999996 4778899999999998432  11 11222332    2244444444211


Q ss_pred             ccccEE-Ecccc-cccchhhhhhcccccccchhcc---ccCHHHHhhcCCC-CcceeEeEE-eeeecCccceecccccCC
Q psy16975        330 NCGVQV-INGYN-LAKSEKQCAENHYLKPVLPVYK---RMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQKDG  402 (728)
Q Consensus       330 ~~Gv~~-~~G~~-~a~~~~~~~~~~~~~~~g~~~~---~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~a~  402 (728)
                      .....+ ..|.+ ++.++++.+....+...+.+.+   +++.+++.+++|. ....|++++ +++++|..++.+|++.++
T Consensus       344 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~  423 (689)
T 3pvc_A          344 GIAFDHQWCGVSQLAFDDKSRGKIEKMLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLTHALMMLAQ  423 (689)
T ss_dssp             TCCCCEECCCEEEECCSHHHHHHHHHHTTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHH
T ss_pred             ccccccccCceEEeccCHHHHHHHHHHHhcCCChHHhhccCHHHHHHhcCCCcccceEEecCCeEECHHHHHHHHHHHHH
Confidence            222223 34543 3444444332223333444444   8999998877663 345677777 599999999999999998


Q ss_pred             CCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhcc--ccccccccccccEEEcccccccchhhh
Q psy16975        403 PSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHD--HYAGLLSENCGVQVINGYNLAKSEKQC  479 (728)
Q Consensus       403 ~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g--~ada~~VVnAa~~viaG~~~~~S~~L~  479 (728)
                        +.|       ++|+++++ +++...++.+           .|.+.  .+  .+.++.||+|+     |.   |+..+.
T Consensus       424 --~~G-------v~i~~~t~V~~l~~~~~~v-----------~V~t~--~G~~~i~Ad~VVlAt-----G~---~s~~l~  473 (689)
T 3pvc_A          424 --QNG-------MTCHYQHELQRLKRIDSQW-----------QLTFG--QSQAAKHHATVILAT-----GH---RLPEWE  473 (689)
T ss_dssp             --HTT-------CEEEESCCEEEEEECSSSE-----------EEEEC---CCCCEEESEEEECC-----GG---GTTCST
T ss_pred             --hCC-------CEEEeCCeEeEEEEeCCeE-----------EEEeC--CCcEEEECCEEEECC-----Cc---chhccc
Confidence              888       89999988 4554433322           23332  22  23344999999     99   998887


Q ss_pred             hhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecC--CceEEeccc
Q psy16975        480 AENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSY--GGLVTLGGT  557 (728)
Q Consensus       480 ~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~--dG~vviGgt  557 (728)
                      ...+  +++.|+|||++                     .++.......+.      .+.+...|++|..  +|.+++|++
T Consensus       474 ~~~~--lpl~p~rGq~~---------------------~~~~~~~~~~l~------~v~~~~~Yl~P~~~~~g~~~iGat  524 (689)
T 3pvc_A          474 QTHH--LPLSAVRGQVS---------------------HIPTTPVLSQLQ------QVLCYDGYLTPVNPANQHHCIGAS  524 (689)
T ss_dssp             TTTT--SCCEEEEEEEE---------------------EEECCTTGGGCC------SEEESSSEECCCBTTTTEEEEECC
T ss_pred             cccC--CccccccCcEE---------------------EECCCCccccCC------eeEeCCceEccccCCCCeEEEEEe
Confidence            7765  78999999964                     221110000011      1123348999998  899999999


Q ss_pred             cccCcccccccccchhhhhhcccccccccc-----cccceeeeeecccccce
Q psy16975        558 QDYGNARLGVDRFDSRAILNRTAAVRPEIL-----AAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       558 ~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~-----~~~I~~~waGlRP~tpd  604 (728)
                      ++.++++..++.+..+.+++++.+++|.+.     +.++.+.|+|+||+++|
T Consensus       525 ~~~~~~d~~~~~~~~~~ll~~l~~~~P~l~~~~~~~~~~~~~w~G~R~~t~D  576 (689)
T 3pvc_A          525 YQRGDIATDFRLTEQQENRERLLRCLPQVSWPQQVDVSDNQARCGVRCAIRD  576 (689)
T ss_dssp             CEETBCCCCCCHHHHHHHHHHHHHHCTTCSGGGGCCCTTCCEEEEEEEECTT
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCccccccccccccceeEEEeeecCC
Confidence            999888888888899999999999999987     45678999999999999

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.96  E-value=1.2e-31  Score=315.35  Aligned_cols=405  Identities=14%  Similarity=0.104  Sum_probs=257.5

Q ss_pred             ceEEEEEEEEeeecccccCcccceeeeeEEEEEeCCCCCccccccCCceeeEEeecCCCC-------CCCccccCcceEE
Q psy16975        182 SWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCP-------ANPKVMGSNHKVA  254 (728)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~-------~~~~~~~~~~dVv  254 (728)
                      .+.+..+...||+.+.++||.++.       .+         +. +.++.+..+......       .....+...+||+
T Consensus       214 ~~~t~~~~~~vr~~L~~aGf~v~~-------~~---------~~-g~krem~~~~~~~~~~~~~~~~~~~~~~~~~~DVv  276 (676)
T 3ps9_A          214 TLATFTSAGFVRRGLQDAGFTMQK-------RK---------GF-GRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAA  276 (676)
T ss_dssp             EEEESCCCHHHHHHHHHHTCEEEE-------EE---------CS-TTCCEEEEEECCSCCCCCCSCGGGCCCCCSCCEEE
T ss_pred             EEEeccCcHHHHHHHHhCCeEEEe-------cc---------cc-ccchhhhheeccccccccccCCcccCccCCCCCEE
Confidence            455666778999999999998883       22         12 223333333221110       0001123458999


Q ss_pred             EeecceechhhHHHhhhhCCCCcEEEeecc-cccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccccccc-
Q psy16975        255 ILGAGIIGLSTALELQRRFPNCDVTVIADK-FNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCG-  332 (728)
Q Consensus       255 VIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~~~~G-  332 (728)
                      |||||++|+++|++|++  +|++|+|||++ .++.++|+.++|++.+...  . ......++...+++...++.+ +.+ 
T Consensus       277 IIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~-~l~~  350 (676)
T 3ps9_A          277 IIGGGIASALLSLALLR--RGWQVTLYCADEAPALGASGNRQGALYPLLS--K-HDEALNRFFSNAFTFARRFYD-QLPV  350 (676)
T ss_dssp             EECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSCSTTCCSCEEECCCCC--S-SCHHHHHHHHHHHHHHHHHHH-HCCS
T ss_pred             EECCCHHHHHHHHHHHH--CCCeEEEEeCCCcccccCccCCCceecCcCC--C-CccHHHHHHHHHHHHHHHHHH-HCCC
Confidence            99999999999999999  99999999995 5778899999999998431  1 122333333322222222221 112 


Q ss_pred             -cEE-Ecccc-cccchhhhhhcccccccchhc---cccCHHHHhhcCCC-CcceeEeEE-eeeecCccceecccccCCCC
Q psy16975        333 -VQV-INGYN-LAKSEKQCAENHYLKPVLPVY---KRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQKDGPS  404 (728)
Q Consensus       333 -v~~-~~G~~-~a~~~~~~~~~~~~~~~g~~~---~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~a~~~  404 (728)
                       ..+ ..|.+ +..++.+.+....+...+.+.   ++++.+++.+++|. ....|++++ +++++|..++.+|.+.++  
T Consensus       351 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~--  428 (676)
T 3ps9_A          351 KFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQ--  428 (676)
T ss_dssp             CCCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHH--
T ss_pred             CcCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHH--
Confidence             222 34543 344444332222233334443   48899988776653 345677777 699999999999999998  


Q ss_pred             CCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcc
Q psy16975        405 NLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH  483 (728)
Q Consensus       405 ~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~g  483 (728)
                      +.|       ++|+++++ +++...++.+           .|.+.. .+.+.++.||+|+     |.   |+..+....+
T Consensus       429 ~~G-------v~i~~~t~V~~l~~~~~~v-----------~V~t~~-G~~i~Ad~VVlAt-----G~---~s~~l~~~~~  481 (676)
T 3ps9_A          429 QQG-------LQIYYQYQLQNFSRKDDCW-----------LLNFAG-DQQATHSVVVLAN-----GH---QISRFSQTST  481 (676)
T ss_dssp             HTT-------CEEEESCCEEEEEEETTEE-----------EEEETT-SCEEEESEEEECC-----GG---GGGCSTTTTT
T ss_pred             hCC-------CEEEeCCeeeEEEEeCCeE-----------EEEECC-CCEEECCEEEECC-----Cc---chhccccccC
Confidence            888       89999988 4555443332           222220 1223334999999     99   9988877665


Q ss_pred             cccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecC--CceEEeccccccC
Q psy16975        484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSY--GGLVTLGGTQDYG  561 (728)
Q Consensus       484 i~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~--dG~vviGgt~e~~  561 (728)
                        +|+.|+|||++                     .++.......+.      .+.....|++|..  +|++++|++++..
T Consensus       482 --lpl~p~rGq~~---------------------~~~~~~~~~~l~------~~l~~~~Yl~P~~~~~g~~~iG~t~~~~  532 (676)
T 3ps9_A          482 --LPVYSVAGQVS---------------------HIPTTPELAELK------QVLCYDGYLTPQNPANQHHCIGASYHRG  532 (676)
T ss_dssp             --CSCEEEEEEEE---------------------EEECCTTGGGCC------SEEESSSEECCCBTTTTEEEEECCCEET
T ss_pred             --CcceeecCEEE---------------------EECCCcccccCC------ceeECCeeeccccCCCCeEEEeeccCCC
Confidence              78999999964                     121110001111      1123448999998  8999999999998


Q ss_pred             cccccccccchhhhhhcccccccccc-----cccceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEE
Q psy16975        562 NARLGVDRFDSRAILNRTAAVRPEIL-----AAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLF  634 (728)
Q Consensus       562 ~~d~~~~~~~~~~ll~~~~~l~P~L~-----~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~  634 (728)
                      +.+..++.+..+.+++++.+++|.+.     +.++.+.|+|+||+|+|  +.|....                       
T Consensus       533 ~~d~~~~~~~~~~~l~~l~~~~P~l~~~~~~d~~~~~~~~G~R~~t~D~lPiiG~~p-----------------------  589 (676)
T 3ps9_A          533 SEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVP-----------------------  589 (676)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSTTCHHHHTCCCTTCCEEEEEEEECTTCCCEEEEEE-----------------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCccccccCcccccceEEEEeCccCCcCCccCcCC-----------------------
Confidence            88888899999999999999999986     35678999999999999  3222100                       


Q ss_pred             EeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeee
Q psy16975        635 VHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSV  714 (728)
Q Consensus       635 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l  714 (728)
                        .+        .........+..+...+-+|               |   ..-.||+++||||.|+++||++|+.+|++
T Consensus       590 --~~--------~~~~~~y~~l~~~~~~~~~~---------------~---~~~~l~~a~G~g~~Gl~~Ap~~ae~lA~~  641 (676)
T 3ps9_A          590 --DY--------EATLVEYASLAEQKDEAVSA---------------P---VFDDLFMFAALGSRGLCSAPLCAEILAAQ  641 (676)
T ss_dssp             --CH--------HHHHHHTTTTTSCCTTCCSC---------------C---EEEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             --Ch--------HHHHHHHHhhhccccccccC---------------C---CCCCEeeeecccccHHHHHHHHHHHHHHH
Confidence              00        00000000110000000000               1   12358999999999999999999999999


Q ss_pred             eecc
Q psy16975        715 FEQS  718 (728)
Q Consensus       715 ~~~~  718 (728)
                      |.+.
T Consensus       642 i~g~  645 (676)
T 3ps9_A          642 MSDE  645 (676)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            9653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.96  E-value=2e-31  Score=290.18  Aligned_cols=335  Identities=13%  Similarity=0.103  Sum_probs=233.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhccccccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLL  327 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~  327 (728)
                      ++||+|||||++|+++|++|++  +|++|+|||++..+.  ++|..++|++++..  ..  .....++..++.+.|.++.
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~--~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~l~   76 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPHTNGSHHGDTRIIRHAY--GE--GREYVPLALRSQELWYELE   76 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSCSSSSSCSSEEEECSSC--TT--CGGGHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCCCCcchhhhhhh--cC--CchHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999  899999999998777  89999999988732  11  2245566677777776665


Q ss_pred             ccccccE--EEccccc-ccchh--hhh-hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceec
Q psy16975        328 SENCGVQ--VINGYNL-AKSEK--QCA-ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPW  396 (728)
Q Consensus       328 ~~~~Gv~--~~~G~~~-a~~~~--~~~-~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~  396 (728)
                      + ..+.+  ...|++. ..+++  ..+ ....++..+.++++++++++.+++|.    ....+++.+ +++++|..++.+
T Consensus        77 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (389)
T 2gf3_A           77 K-ETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRA  155 (389)
T ss_dssp             H-HCSSCCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHH
T ss_pred             H-HhCCcceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHH
Confidence            3 33322  2445433 32211  111 12233445677889999999888884    234566666 599999999999


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccc
Q psy16975        397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKS  475 (728)
Q Consensus       397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S  475 (728)
                      |++.++  ++|       ++|+++++ ++++..++.+           .+.+.  .+...++.||+|+     |.   |+
T Consensus       156 l~~~~~--~~G-------v~i~~~~~v~~i~~~~~~~-----------~v~~~--~g~~~a~~vV~A~-----G~---~~  205 (389)
T 2gf3_A          156 YRELAE--ARG-------AKVLTHTRVEDFDISPDSV-----------KIETA--NGSYTADKLIVSM-----GA---WN  205 (389)
T ss_dssp             HHHHHH--HTT-------CEEECSCCEEEEEECSSCE-----------EEEET--TEEEEEEEEEECC-----GG---GH
T ss_pred             HHHHHH--HCC-------CEEEcCcEEEEEEecCCeE-----------EEEeC--CCEEEeCEEEEec-----Cc---cH
Confidence            999998  888       88998888 4444322211           12232  2333344999999     99   99


Q ss_pred             hhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH---hhceeeeecCCc-e
Q psy16975        476 EKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR---LAGAYIIPSYGG-L  551 (728)
Q Consensus       476 ~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~---~~~~YiiP~~dG-~  551 (728)
                      ..|++..++.+|+.|.|||++.                     +++.. .++.....++.++.   +...|++|..+| .
T Consensus       206 ~~l~~~~g~~~pl~~~rg~~~~---------------------~~~~~-~~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~  263 (389)
T 2gf3_A          206 SKLLSKLNLDIPLQPYRQVVGF---------------------FESDE-SKYSNDIDFPGFMVEVPNGIYYGFPSFGGCG  263 (389)
T ss_dssp             HHHGGGGTEECCCEEEEEEEEE---------------------ECCCH-HHHBGGGTCCEEEEEETTEEEEEECBSTTCC
T ss_pred             HHHhhhhccCCceEEEEEEEEE---------------------EecCc-ccccccccCCEEEEeCCCCcEEEcCCCCCCc
Confidence            9998877666789999999642                     21110 00000000000111   125799999988 8


Q ss_pred             EEecccc-----ccCcccccc--cccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeee
Q psy16975        552 VTLGGTQ-----DYGNARLGV--DRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYP  622 (728)
Q Consensus       552 vviGgt~-----e~~~~d~~~--~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~  622 (728)
                      +++|++.     ++++++..+  +++..+.+++.+.++||.+.+ ++.+.|+|+||+|+|  +.|..             
T Consensus       264 ~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~~~~w~g~r~~t~D~~p~ig~-------------  329 (389)
T 2gf3_A          264 LKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANG-ELKRGAVCMYTKTLDEHFIIDL-------------  329 (389)
T ss_dssp             EEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHHHHHHCGGGCS-CEEEEEEEEEEECTTSCCEEEE-------------
T ss_pred             EEEEEcCCCCccCcccccCccCCCHHHHHHHHHHHHHhCCCCCC-CceEEEEEEeccCCCCCeEEcc-------------
Confidence            9999875     233445556  777889999999999999988 899999999999998  32221             


Q ss_pred             eeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccc
Q psy16975        623 VFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVT  702 (728)
Q Consensus       623 ~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t  702 (728)
                                                                                  ..+ .-.+|+++||+|+|++
T Consensus       330 ------------------------------------------------------------~~~-~~~l~~a~G~~g~G~~  348 (389)
T 2gf3_A          330 ------------------------------------------------------------HPE-HSNVVIAAGFSGHGFK  348 (389)
T ss_dssp             ------------------------------------------------------------ETT-EEEEEEEECCTTCCGG
T ss_pred             ------------------------------------------------------------CCC-CCCEEEEECCcccccc
Confidence                                                                        111 1248999999999999


Q ss_pred             cCCCCceeeeeeeecc
Q psy16975        703 SAPGSARCAVSVFEQS  718 (728)
Q Consensus       703 ~s~g~A~~~~~l~~~~  718 (728)
                      ++|++|+.+++++.+.
T Consensus       349 ~ap~~g~~la~~i~~~  364 (389)
T 2gf3_A          349 FSSGVGEVLSQLALTG  364 (389)
T ss_dssp             GHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHcCC
Confidence            9999999999998764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.96  E-value=3e-31  Score=295.94  Aligned_cols=343  Identities=15%  Similarity=0.106  Sum_probs=238.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC-CcEEEeec-ccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIAD-KFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk-~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      .++||+|||||++|+++|++|++  +| .+|+|||+ ..++.++|+.++|++.+..  .   .....++...+.+.|.++
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~--~G~~~V~vlE~~~~~~~g~S~~~~g~i~~~~--~---~~~~~~l~~~~~~~~~~l   94 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKV--WSGGSVLVVDAGHAPGSGDSGRSMAAFRTFF--S---STMNRLVAGSTVRLFEDA   94 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--HHCSCEEEEESSSSTTCSGGGSSCCEEECCC--S---SHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEccCCCCCCCcccCCCcEecccC--C---CHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999  78 99999999 7788899999999998842  1   234567777777777776


Q ss_pred             cccccccE--E-Ecccccccchhhhh----hcccccccchhc-----ccc-----------CHHHHhhcCCCCcceeEeE
Q psy16975        327 LSENCGVQ--V-INGYNLAKSEKQCA----ENHYLKPVLPVY-----KRM-----------SEEELAEIGPGDWKYGIYM  383 (728)
Q Consensus       327 ~~~~~Gv~--~-~~G~~~a~~~~~~~----~~~~~~~~g~~~-----~~L-----------~~~el~~~~P~~~~~G~~~  383 (728)
                      .. . +++  + ..|.+++.++++.+    ....+...+.++     +++           +.+++.+........++++
T Consensus        95 ~~-~-g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (448)
T 3axb_A           95 QR-G-GEDLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEVLGVGDVEGAVLI  172 (448)
T ss_dssp             HH-T-TCCCCCBCCCEEEEECHHHHHHHHHHHTTSCCBTTTEEEECHHHHHHHHCCCCCCTTSSHHHHHTCCCCCEEEEE
T ss_pred             Hh-c-CcccccccCCEEEEcCHHHHHHHHHHHHHHHhhCCCccccchhhhhhcccccccCCCHHHHHhccCCCceEEEEe
Confidence            53 3 432  2 34554444433322    123344455566     777           8888766211134556777


Q ss_pred             E-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEecc---ccc-c-ccCCcchhHHHHhhhcccc--
Q psy16975        384 S-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGP---LHE-K-VSSGPRTCAMQRAMQHDHY--  454 (728)
Q Consensus       384 ~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~---~v~-~-l~~~~~v~~v~t~~~~g~a--  454 (728)
                      + ++++||..++.+|++.++  ++|       ++|+++++ +++......   .-. . -.++++++.|.+.  .+..  
T Consensus       173 ~~~~~~~~~~l~~~L~~~~~--~~G-------v~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~--~g~i~~  241 (448)
T 3axb_A          173 RSAGFLDAEKVVDYYYRRAS--GAG-------VEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLS--DGTRVE  241 (448)
T ss_dssp             SSEEECCHHHHHHHHHHHHH--HTT-------CEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEET--TSCEEE
T ss_pred             CCCeEEcHHHHHHHHHHHHH--hCC-------CEEEcCCeEEEEEecccccccccccccccCCCceEEEEeC--CCEEee
Confidence            6 699999999999999998  888       99999988 445431000   000 0 0012233334443  3344  


Q ss_pred             ccccccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcc----
Q psy16975        455 AGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQ----  530 (728)
Q Consensus       455 da~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~----  530 (728)
                      .++.||+|+     |.   |+..|++..+...++.|+|||++.                     ++..  .+.+..    
T Consensus       242 ~Ad~VV~At-----G~---~s~~l~~~~g~~~~~~p~rg~~~~---------------------~~~~--~~~~~~~~~~  290 (448)
T 3axb_A          242 VGEKLVVAA-----GV---WSNRLLNPLGIDTFSRPKKRMVFR---------------------VSAS--TEGLRRIMRE  290 (448)
T ss_dssp             EEEEEEECC-----GG---GHHHHHGGGTCCCSEEEEEEEEEE---------------------EECC--SHHHHHHHHH
T ss_pred             cCCEEEECC-----Cc---CHHHHHHHcCCCCcccccceEEEE---------------------eCCc--cccccccccc
Confidence            455999999     99   999998887767889999999642                     2110  000000    


Q ss_pred             ------cchHHHHHhhceeeeecCC-ceEEecccccc---Ccccc--cccccc-hhhhhhcccccccccccccceeeeee
Q psy16975        531 ------KNFASLVRLAGAYIIPSYG-GLVTLGGTQDY---GNARL--GVDRFD-SRAILNRTAAVRPEILAAPVEKVWVG  597 (728)
Q Consensus       531 ------~~~~~~i~~~~~YiiP~~d-G~vviGgt~e~---~~~d~--~~~~~~-~~~ll~~~~~l~P~L~~~~I~~~waG  597 (728)
                            ..++.++.....|++|..+ |++++|++.+.   .+++.  .++.+. .+.+++.+.++||.|.+.++.+.|+|
T Consensus       291 ~~~~~~~~~p~~~~~~~~y~~p~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G  370 (448)
T 3axb_A          291 GDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWAG  370 (448)
T ss_dssp             CCTTSSSSCCEEEETTTEEEEEETTTTEEEEEECCCTTSCBCCCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEEE
T ss_pred             ccccccCCCceEEcCCceEEeecCCCCeEEEecCCcccCCcccccccCCChHHHHHHHHHHHHHhCcCcccCCcccceEE
Confidence                  0000011125689999998 89999999863   34455  666777 89999999999999999999999999


Q ss_pred             cccc-cce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccc
Q psy16975        598 LRPY-RHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTL  674 (728)
Q Consensus       598 lRP~-tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~  674 (728)
                      +||+ |+|  +.|..                                                                 
T Consensus       371 ~r~~~t~d~~p~ig~-----------------------------------------------------------------  385 (448)
T 3axb_A          371 HYDISFDANPVVFEP-----------------------------------------------------------------  385 (448)
T ss_dssp             EEEEETTSSCEEECG-----------------------------------------------------------------
T ss_pred             EeccccCCCCcEeee-----------------------------------------------------------------
Confidence            9999 999  32211                                                                 


Q ss_pred             cCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeecc
Q psy16975        675 CNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS  718 (728)
Q Consensus       675 ~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~  718 (728)
                            .| .|    ||+++||+|+||+++|++|+.+++++.+.
T Consensus       386 ------~~-~~----l~~a~G~~g~G~~~ap~~g~~la~~i~~~  418 (448)
T 3axb_A          386 ------WE-SG----IVVAAGTSGSGIMKSDSIGRVAAAVALGM  418 (448)
T ss_dssp             ------GG-CS----EEEEECCTTCCGGGHHHHHHHHHHHHTTC
T ss_pred             ------cC-CC----EEEEECCCchhHhHhHHHHHHHHHHHcCC
Confidence                  01 23    79999999999999999999999998764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.96  E-value=2.8e-31  Score=288.59  Aligned_cols=336  Identities=18%  Similarity=0.185  Sum_probs=240.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      .+.++||+|||||++|+++|++|++  +|++|+|||++.++.++|+.++|++.+.....  ......+++.++.+.|.++
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~--~G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~--~~~~~~~l~~~~~~~~~~~   89 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTMGGRTTSAAAGMLGAHAECE--ERDAFFDFAMHSQRLYKGL   89 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTTTHHHHCCCBCCGGGSCS--SCSHHHHHHHHHHHHTTTH
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCcccchhcCceeccCccCC--CCcHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999  89999999999888889999999998843211  1224566666777766654


Q ss_pred             cc---cccccE--E-Ecccc-cccchhhhhhcccccccchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCcccee
Q psy16975        327 LS---ENCGVQ--V-INGYN-LAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLP  395 (728)
Q Consensus       327 ~~---~~~Gv~--~-~~G~~-~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~  395 (728)
                      .+   ...++.  + ..|.+ ++.++++.+....+.+. ..+++++.+++.+++|.   ....+++++ +++++|..++.
T Consensus        90 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  168 (382)
T 1ryi_A           90 GEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDL-DSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCK  168 (382)
T ss_dssp             HHHHHHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTS-TTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHH
T ss_pred             HHHHHHhhCCCcCeeecceEEEEeCHHHHHHHHHHhhc-CCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHH
Confidence            42   112332  2 34543 34444333222222222 56788999999888874   234677776 59999999999


Q ss_pred             cccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccccc
Q psy16975        396 WCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAK  474 (728)
Q Consensus       396 ~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~  474 (728)
                      +|.+.++  +.|       ++|+++++ +++...++          ++ .|.+.  .+...++.||+|+     |.   |
T Consensus       169 ~l~~~~~--~~g-------~~i~~~~~v~~i~~~~~----------~~-~v~~~--~g~~~a~~vV~A~-----G~---~  218 (382)
T 1ryi_A          169 AYVKAAK--MLG-------AEIFEHTPVLHVERDGE----------AL-FIKTP--SGDVWANHVVVAS-----GV---W  218 (382)
T ss_dssp             HHHHHHH--HTT-------CEEETTCCCCEEECSSS----------SE-EEEET--TEEEEEEEEEECC-----GG---G
T ss_pred             HHHHHHH--HCC-------CEEEcCCcEEEEEEECC----------EE-EEEcC--CceEEcCEEEECC-----Ch---h
Confidence            9999998  778       88888877 34432221          11 23332  2233344999999     99   9


Q ss_pred             chhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEe
Q psy16975        475 SEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTL  554 (728)
Q Consensus       475 S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vvi  554 (728)
                      +..+++..+...++.|.|||++                     .++.  ..+.+..     .+.....|++|..+|++++
T Consensus       219 s~~l~~~~~~~~~~~~~~g~~~---------------------~~~~--~~~~~~~-----~~~~~~~~~~p~~~g~~~v  270 (382)
T 1ryi_A          219 SGMFFKQLGLNNAFLPVKGECL---------------------SVWN--DDIPLTK-----TLYHDHCYIVPRKSGRLVV  270 (382)
T ss_dssp             THHHHHHTTCCCCCEEEEEEEE---------------------EEEC--CSSCCCS-----EEEETTEEEEECTTSEEEE
T ss_pred             HHHHHHhcCCCCceeccceEEE---------------------EECC--CCCCccc-----eEEcCCEEEEEcCCCeEEE
Confidence            9888887776678999999953                     1111  1111111     1223468999999999999


Q ss_pred             ccccccCcccccccccchhhhhhcccccccccccccceeeeeecccccce-eeeeeccccccceeeeeeeeEEeceeEEE
Q psy16975        555 GGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH-VRVERDLTGAAQYLTWYPVFKVYGITSVL  633 (728)
Q Consensus       555 Ggt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd-~Rie~e~~~~~~~~~~l~~~~~~G~~~~g  633 (728)
                      |++.+..+++..++.+..+.+++.+.+++|.+.+.++.+.|+|+||+++| ..+..                        
T Consensus       271 G~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~w~g~~~~t~d~~p~ig------------------------  326 (382)
T 1ryi_A          271 GATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIG------------------------  326 (382)
T ss_dssp             ECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEECSSSCCEEE------------------------
T ss_pred             eecccccCCCCCCCHHHHHHHHHHHHHhCCCcCCCceeeEEEEecccCCCCCcEec------------------------
Confidence            99988777777788888999999999999999998999999999999998 21110                        


Q ss_pred             EEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeee
Q psy16975        634 FVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVS  713 (728)
Q Consensus       634 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~  713 (728)
                                                                      +..+ .-.+++++||+|.|+++||++|+.+++
T Consensus       327 ------------------------------------------------~~~~-~~~l~~~~G~~g~G~~~a~~~g~~la~  357 (382)
T 1ryi_A          327 ------------------------------------------------RHPE-DSRILFAAGHFRNGILLAPATGALISD  357 (382)
T ss_dssp             ------------------------------------------------EETT-EEEEEEEECCSSCTTTTHHHHHHHHHH
T ss_pred             ------------------------------------------------cCCC-cCCEEEEEcCCcchHHHhHHHHHHHHH
Confidence                                                            0111 124889999999999999999999999


Q ss_pred             eeecc
Q psy16975        714 VFEQS  718 (728)
Q Consensus       714 l~~~~  718 (728)
                      ++.+.
T Consensus       358 ~i~~~  362 (382)
T 1ryi_A          358 LIMNK  362 (382)
T ss_dssp             HHTTC
T ss_pred             HHhCC
Confidence            98764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.95  E-value=2.5e-30  Score=283.01  Aligned_cols=333  Identities=13%  Similarity=0.106  Sum_probs=238.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCC-CcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAG  325 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~  325 (728)
                      .+.++||+|||||++|+++|++|++. +| ++|+|||++.++.++|+.++|++++..  .   .....++...+.+.|.+
T Consensus        18 ~~~~~dVvIIG~G~~Gl~~A~~La~~-~G~~~V~vlE~~~~~~gas~~~~g~~~~~~--~---~~~~~~l~~~~~~~~~~   91 (405)
T 2gag_B           18 PKKSYDAIIVGGGGHGLATAYFLAKN-HGITNVAVLEKGWLAGGNMARNTTIIRSNY--L---WDESAGIYEKSLKLWEQ   91 (405)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHH-HCCCCEEEECSSSTTCSGGGTSCCCBCCCC--S---SHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHh-cCCCcEEEEeCCCCCCCcccccCceeeecC--C---CHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999982 37 899999999888899999999998842  1   22345566666666666


Q ss_pred             ccccccccE--E-Eccccc-ccchhhhh----hcccccccchhccccCHHHHhhcCCC---------CcceeEeEE-eee
Q psy16975        326 LLSENCGVQ--V-INGYNL-AKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG---------DWKYGIYMS-TLV  387 (728)
Q Consensus       326 l~~~~~Gv~--~-~~G~~~-a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~---------~~~~G~~~~-~g~  387 (728)
                      +.+ +.+++  + ..|.+. +.+++..+    ...+++..+..+++++.+++.+++|.         ....+++++ +++
T Consensus        92 ~~~-~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  170 (405)
T 2gag_B           92 LPE-DLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGI  170 (405)
T ss_dssp             HHH-HTTCCCCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBB
T ss_pred             HHH-HhCCCcCEecccEEEEEcCHHHHHHHHHHHHHHHhcCCCceEeCHHHHHhhCCCCcccccccccceeEEEeCCCcc
Confidence            553 33433  2 345433 33333221    12334566778899999999888774         124566666 699


Q ss_pred             ecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEE
Q psy16975        388 IPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQV  466 (728)
Q Consensus       388 idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~v  466 (728)
                      +||..++..|.+.++  +.|       ++|+++++ +++...++          +++.+.+.  .+...++.||+|+   
T Consensus       171 ~~~~~~~~~l~~~~~--~~g-------~~i~~~~~v~~i~~~~~----------~~~~v~~~--~g~~~a~~vV~a~---  226 (405)
T 2gag_B          171 AKHDHVAWAFARKAN--EMG-------VDIIQNCEVTGFIKDGE----------KVTGVKTT--RGTIHAGKVALAG---  226 (405)
T ss_dssp             CCHHHHHHHHHHHHH--HTT-------CEEECSCCEEEEEESSS----------BEEEEEET--TCCEEEEEEEECC---
T ss_pred             CCHHHHHHHHHHHHH--HCC-------CEEEcCCeEEEEEEeCC----------EEEEEEeC--CceEECCEEEECC---
Confidence            999999999999998  788       88888888 44433222          22223333  2233344999999   


Q ss_pred             EcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH--hhceee
Q psy16975        467 INGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR--LAGAYI  544 (728)
Q Consensus       467 iaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~--~~~~Yi  544 (728)
                        |.   |+..+....++..|+.|.++|++                     +.++  ..+.+..     ++.  +...|+
T Consensus       227 --G~---~s~~l~~~~g~~~~~~~~~~~~~---------------------~~~~--~~~~~~~-----~~~~~~~~~y~  273 (405)
T 2gag_B          227 --AG---HSSVLAEMAGFELPIQSHPLQAL---------------------VSEL--FEPVHPT-----VVMSNHIHVYV  273 (405)
T ss_dssp             --GG---GHHHHHHHHTCCCCEEEEEEEEE---------------------EEEE--BCSCCCS-----EEEETTTTEEE
T ss_pred             --ch---hHHHHHHHcCCCCCccccceeEE---------------------EecC--CccccCc-----eEEeCCCcEEE
Confidence              99   99888877776678889998853                     1110  0011111     111  356899


Q ss_pred             eecCCceEEecccccc-Ccccccccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeee
Q psy16975        545 IPSYGGLVTLGGTQDY-GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWY  621 (728)
Q Consensus       545 iP~~dG~vviGgt~e~-~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l  621 (728)
                      +|..+|++++|++.+. .+++..++.+..+.+++.+.+++|.+.+.++.+.|+|+||+++|  +.+...           
T Consensus       274 ~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~w~g~~~~t~d~~p~ig~~-----------  342 (405)
T 2gag_B          274 SQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKT-----------  342 (405)
T ss_dssp             EECTTSEEEEEEEECSSCCCSSCCCTHHHHHHHHHHHHHCGGGGGCEECEEEEEEEEEETTSCCEEEEC-----------
T ss_pred             EEcCCCcEEEEeccCCCCccccCCCHHHHHHHHHHHHHhCCccccCCcceEEeeccccCCCCCCEeccc-----------
Confidence            9999999999998874 44566677778899999999999999999999999999999998  222110           


Q ss_pred             eeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCcccc
Q psy16975        622 PVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGV  701 (728)
Q Consensus       622 ~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~  701 (728)
                                                                                  |..|    +++++||+|.|+
T Consensus       343 ------------------------------------------------------------~~~~----l~~~~G~~g~G~  358 (405)
T 2gag_B          343 ------------------------------------------------------------PIQN----LYVNCGWGTGGF  358 (405)
T ss_dssp             ------------------------------------------------------------SSBT----EEEEECCGGGCS
T ss_pred             ------------------------------------------------------------CCCC----EEEEecCCCchh
Confidence                                                                        1123    789999999999


Q ss_pred             ccCCCCceeeeeeeecc
Q psy16975        702 TSAPGSARCAVSVFEQS  718 (728)
Q Consensus       702 t~s~g~A~~~~~l~~~~  718 (728)
                      ++++++|+.+++++.+.
T Consensus       359 ~~a~~~g~~la~~i~g~  375 (405)
T 2gag_B          359 KGTPGAGFTLAHTIAND  375 (405)
T ss_dssp             TTHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCC
Confidence            99999999999999764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.95  E-value=7.9e-30  Score=276.21  Aligned_cols=332  Identities=14%  Similarity=0.092  Sum_probs=221.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhccccccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLL  327 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~  327 (728)
                      ++||+|||||++|+++|++|++  +|++|+|||++..+.  ++|..+++++....  ..  .....++..++.+.|.++.
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~--~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~l~   75 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATR--AGLNVLMTDAHMPPHQHGSHHGDTRLIRHAY--GE--GEKYVPLVLRAQMLWDELS   75 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHH--TTCCEEEECSSCSSSSSSSCCSSEEEECSSC--TT--CGGGHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCCCCCCccceeeecc--CC--CchHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999  899999999987664  34445566776521  11  1345667777777776654


Q ss_pred             cccccc----EEEcccc-cccchhh-hh-hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCcccee
Q psy16975        328 SENCGV----QVINGYN-LAKSEKQ-CA-ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLP  395 (728)
Q Consensus       328 ~~~~Gv----~~~~G~~-~a~~~~~-~~-~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~  395 (728)
                        +.++    ....|.+ ++.++.+ ++ ....++..+.++++++.+++.+++|.    ....|++++ ++++||..++.
T Consensus        76 --~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~  153 (372)
T 2uzz_A           76 --RHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIK  153 (372)
T ss_dssp             --TTCSSSCSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHH
T ss_pred             --HhCCCccceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHH
Confidence              2333    1245543 3333222 11 12333456777899999999988874    223567776 59999999999


Q ss_pred             cccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccccc
Q psy16975        396 WCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAK  474 (728)
Q Consensus       396 ~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~  474 (728)
                      +|.+.++  +.|       ++|+++++ +++....+.+           .+.+.  .+...++.||+|+     |.   |
T Consensus       154 ~l~~~~~--~~G-------~~i~~~~~V~~i~~~~~~~-----------~v~~~--~g~~~a~~vV~a~-----G~---~  203 (372)
T 2uzz_A          154 TWIQLAK--EAG-------CAQLFNCPVTAIRHDDDGV-----------TIETA--DGEYQAKKAIVCA-----GT---W  203 (372)
T ss_dssp             HHHHHHH--HTT-------CEEECSCCEEEEEECSSSE-----------EEEES--SCEEEEEEEEECC-----GG---G
T ss_pred             HHHHHHH--HCC-------CEEEcCCEEEEEEEcCCEE-----------EEEEC--CCeEEcCEEEEcC-----Cc---c
Confidence            9999998  888       88998888 4444322211           23332  2333344999999     99   9


Q ss_pred             chhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEe
Q psy16975        475 SEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTL  554 (728)
Q Consensus       475 S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vvi  554 (728)
                      +..|+++    +|+.|+|||++..+...               .+......|.+...    .......|++|+.+|.+++
T Consensus       204 s~~l~~~----l~~~p~rg~~~~~~~~~---------------~~~~~~~~p~~~~~----~~~~~~~y~~p~~~~~~~i  260 (372)
T 2uzz_A          204 VKDLLPE----LPVQPVRKVFAWYQADG---------------RYSVKNKFPAFTGE----LPNGDQYYGFPAENDALKI  260 (372)
T ss_dssp             GGGTSTT----CCCEEEECCEEEECCCG---------------GGSTTTTCCEEEEE----CTTCCEEEEECCSSSCEEE
T ss_pred             HHhhccc----cCceEEEEEEEEEEecc---------------ccCccccCCEEEEe----cCCCCeEEecCCCCCeEEE
Confidence            9988762    57899999853111000               00000001110000    0001247888998889999


Q ss_pred             cccccc-------Ccccccccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeeeE
Q psy16975        555 GGTQDY-------GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFK  625 (728)
Q Consensus       555 Ggt~e~-------~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~  625 (728)
                      |++...       ...+..++++..+.+++.+.++||.+.  ++...|+|+||+|+|  +.|..                
T Consensus       261 G~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~--~~~~~~~g~r~~t~d~~p~ig~----------------  322 (372)
T 2uzz_A          261 GKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVLPGIG--CCLYGAACTYDNSPDEDFIIDT----------------  322 (372)
T ss_dssp             EESSCCEECCSGGGCCCTTTSTTGGGSSHHHHHHHSCSCC--CEEEECCCEEEECTTSCCCEEE----------------
T ss_pred             EecCCCCccCChhhccCCCCCHHHHHHHHHHHHHHCCCCC--ccceeeEEeeccCCCCCeEEec----------------
Confidence            987521       112233445778889999999999997  788999999999999  32221                


Q ss_pred             EeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCC
Q psy16975        626 VYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAP  705 (728)
Q Consensus       626 ~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~  705 (728)
                                                                               ..+ .-.|++++||+|+|++++|
T Consensus       323 ---------------------------------------------------------~~~-~~~l~~~~G~~g~G~~~ap  344 (372)
T 2uzz_A          323 ---------------------------------------------------------LPG-HDNTLLITGLSGHGFKFAS  344 (372)
T ss_dssp             ---------------------------------------------------------ETT-EEEEEEECCCCSCCGGGHH
T ss_pred             ---------------------------------------------------------CCC-CCCEEEEeCCCccchhccH
Confidence                                                                     111 1248999999999999999


Q ss_pred             CCceeeeeeeecc
Q psy16975        706 GSARCAVSVFEQS  718 (728)
Q Consensus       706 g~A~~~~~l~~~~  718 (728)
                      ++|+.++++|.+.
T Consensus       345 ~~g~~la~~i~~~  357 (372)
T 2uzz_A          345 VLGEIAADFAQDK  357 (372)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.94  E-value=6e-28  Score=266.68  Aligned_cols=323  Identities=12%  Similarity=0.077  Sum_probs=207.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc-cc-cCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LF-EPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG-ii-~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      ..+||+|||||++|+++|++|++..+|++|+|||++.++.++|+.++| .+ .+..  ...  . ..++...+++.|.+.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~--~~~--~-~~~l~~~~~~~~~~~  109 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQD--IPA--G-QEAQAEWTREQLLGA  109 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGG--CCT--T-CHHHHHHHHHHHHTG
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeeccc--CCc--h-HHHHHHHHHHHHHHH
Confidence            458999999999999999999992229999999999888888888888 34 4421  111  1 455666666666552


Q ss_pred             ccccc--ccEE-EcccccccchhhhhhcccccccchhccccCHHHHhhcCCC--------CcceeEeEE-eeeecCccce
Q psy16975        327 LSENC--GVQV-INGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPG--------DWKYGIYMS-TLVIPNRIFL  394 (728)
Q Consensus       327 ~~~~~--Gv~~-~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~--------~~~~G~~~~-~g~idp~~ll  394 (728)
                      ..  .  ...+ ..|++...        ..++..+    +++.+++.+++|.        ....+++++ ++++||..++
T Consensus       110 ~~--~~~~~~~~~~g~l~~~--------~~~~~~g----~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~  175 (405)
T 3c4n_A          110 LG--SGKTLEVEDRPLLHLL--------PAGEGSG----LTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLA  175 (405)
T ss_dssp             GG--SSCCCCEEECCEEEEE--------SSCCSSS----CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHH
T ss_pred             hC--CCCCCcEEeeCeEEeh--------hhHhHCC----CCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHH
Confidence            11  1  1122 34443211        1112222    5666666655541        234566666 5999999999


Q ss_pred             ecccccCCCCCCCCCCceeeEEEEEeeCceeEEEeccccc-ccc-CCcchhHHHHhhhccccccccccccccEEEccccc
Q psy16975        395 PWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHE-KVS-SGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNL  472 (728)
Q Consensus       395 ~~L~~~a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~-~l~-~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~  472 (728)
                      .+|++.++  ++|       ++|+++++  |....|.+.. .+. +++++ .|.+.  .+...++.||+|+     |.  
T Consensus       176 ~~L~~~~~--~~G-------v~i~~~~~--v~~~~g~~~~~~i~~~~~~v-~v~~~--~g~i~a~~VV~A~-----G~--  234 (405)
T 3c4n_A          176 LLAAQQAI--GQG-------AGLLLNTR--AELVPGGVRLHRLTVTNTHQ-IVVHE--TRQIRAGVIIVAA-----GA--  234 (405)
T ss_dssp             HHHHHHHH--TTT-------CEEECSCE--EEEETTEEEEECBCC--------CBC--CEEEEEEEEEECC-----GG--
T ss_pred             HHHHHHHH--HCC-------CEEEcCCE--EEeccccccccceEeeCCeE-EEEEC--CcEEECCEEEECC-----Cc--
Confidence            99999998  888       88888776  1100000000 122 22233 45444  3344444999999     99  


Q ss_pred             ccchhhhh-hcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCce
Q psy16975        473 AKSEKQCA-ENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGL  551 (728)
Q Consensus       473 ~~S~~L~~-~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~  551 (728)
                       |+..|.+ ..++..++.|++||++                     .++.  .......     ++.+...|++|..+|.
T Consensus       235 -~s~~l~~~~~g~~~~~~~~~g~~~---------------------~~~~--~~~~~~~-----~~~~~~~y~~p~~~g~  285 (405)
T 3c4n_A          235 -AGPALVEQGLGLHTRHGRAYRQFP---------------------RLDL--LSGAQTP-----VLRASGLTLRPQNGGY  285 (405)
T ss_dssp             -GHHHHHHHHHCCCCCCEEEEEECC---------------------EECS--CCCTTCC-----EEEETTEEEEEETTEE
T ss_pred             -cHHHHHHHhcCCCCCcccceeEEE---------------------EECC--CCccCCC-----eEECCcEEEEEcCCCe
Confidence             9988888 7776678899999964                     1210  0001111     2224578999999999


Q ss_pred             EEeccccc--cCcccc----------cccccchhhhhhccccccccccccc---------ceeeeeecccccce--eeee
Q psy16975        552 VTLGGTQD--YGNARL----------GVDRFDSRAILNRTAAVRPEILAAP---------VEKVWVGLRPYRHH--VRVE  608 (728)
Q Consensus       552 vviGgt~e--~~~~d~----------~~~~~~~~~ll~~~~~l~P~L~~~~---------I~~~waGlRP~tpd--~Rie  608 (728)
                      +++|++..  ..+++.          ..+.+..+.+++.+ ++||.|.+.+         +.+.|+|+||+|+|  +.|.
T Consensus       286 ~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~t~D~~P~ig  364 (405)
T 3c4n_A          286 TLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLM-DAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAE  364 (405)
T ss_dssp             EEECCCCSCBCSSCCCCCCCBTTBCCSSCHHHHHHHHHHT-TTCGGGGSSCBCCCSSGGGSCEEEEEEGGGCTTCCCEEE
T ss_pred             EEEeccccccccCcCcccccccccccCCCHHHHHHHHHHH-HhCCCccccCccccccccceeeEEEeecCcCCCCCCEec
Confidence            99999853  333442          12233455555443 8999998765         88999999999999  2221


Q ss_pred             eccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceE
Q psy16975        609 RDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTI  688 (728)
Q Consensus       609 ~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~  688 (728)
                      .                                                                       .| .|   
T Consensus       365 ~-----------------------------------------------------------------------~~-~g---  369 (405)
T 3c4n_A          365 E-----------------------------------------------------------------------LA-PG---  369 (405)
T ss_dssp             E-----------------------------------------------------------------------EE-TT---
T ss_pred             c-----------------------------------------------------------------------cC-CC---
Confidence            1                                                                       02 23   


Q ss_pred             EEEeecccCccccccCCCCceeeeeeeecc
Q psy16975        689 RIVHNYGHGGYGVTSAPGSARCAVSVFEQS  718 (728)
Q Consensus       689 ~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~  718 (728)
                       +|+++||+|. ++++|++|+.++++|.+.
T Consensus       370 -l~~a~G~~g~-~~~ap~~a~~la~~i~~~  397 (405)
T 3c4n_A          370 -LHLLLGGPLA-DTLGLAAAHELAQRVSAS  397 (405)
T ss_dssp             -EEEEECCTTH-HHHHHHHHHHHHHHHHHH
T ss_pred             -eEEEEccCcH-HHHHHHHHHHHHHHHhCc
Confidence             7899999886 499999999999998764

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.93  E-value=1.1e-27  Score=262.44  Aligned_cols=295  Identities=13%  Similarity=0.018  Sum_probs=197.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhccccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAG  325 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~  325 (728)
                      ..++||+|||||++|+++|++|++  +|++|+|||+...+.  ++|+.+++++....  .   .....++..++++.|.+
T Consensus         2 ~~~~DVvIIGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~   74 (397)
T 2oln_A            2 TESYDVVVVGGGPVGLATAWQVAE--RGHRVLVLERHTFFNENGGTSGAERHWRLQY--T---QEDLFRLTLETLPLWRA   74 (397)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTCSSSSCCSSEEEECSCC--S---SHHHHHHHHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCCCCCcCeEEEecc--C---cchhhhHHHHHHHHHHH
Confidence            346899999999999999999999  899999999987765  78888888876531  1   12455566666666666


Q ss_pred             ccccccccE--EEccccc-ccchh-----hhh-hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCc
Q psy16975        326 LLSENCGVQ--VINGYNL-AKSEK-----QCA-ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNR  391 (728)
Q Consensus       326 l~~~~~Gv~--~~~G~~~-a~~~~-----~~~-~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~  391 (728)
                      +.+ +.+..  ...|.+. +.++.     ... ...++...+.++++++.+++.+.+|.    ....+++.+ +++++|.
T Consensus        75 l~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~  153 (397)
T 2oln_A           75 LES-RCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVR  153 (397)
T ss_dssp             HHH-HHTCCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHH
T ss_pred             HHH-HhCccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHH
Confidence            542 23322  2445432 32221     111 11233445667788899988877774    234566666 5899999


Q ss_pred             cceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccc
Q psy16975        392 IFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGY  470 (728)
Q Consensus       392 ~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~  470 (728)
                      .++.+|++.++  +.|       ++|+++++ +++....+.+           .+.+.  .+.+.++.||+|+     |.
T Consensus       154 ~~~~~l~~~a~--~~G-------v~i~~~~~V~~i~~~~~~v-----------~v~t~--~g~i~a~~VV~A~-----G~  206 (397)
T 2oln_A          154 GTLAALFTLAQ--AAG-------ATLRAGETVTELVPDADGV-----------SVTTD--RGTYRAGKVVLAC-----GP  206 (397)
T ss_dssp             HHHHHHHHHHH--HTT-------CEEEESCCEEEEEEETTEE-----------EEEES--SCEEEEEEEEECC-----GG
T ss_pred             HHHHHHHHHHH--HcC-------CEEECCCEEEEEEEcCCeE-----------EEEEC--CCEEEcCEEEEcC-----Cc
Confidence            99999999998  778       89999988 4554332221           12222  2333444999999     99


Q ss_pred             ccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhh-----ceeee
Q psy16975        471 NLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLA-----GAYII  545 (728)
Q Consensus       471 ~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~-----~~Yii  545 (728)
                         |+..+++..++.+|+.|.|++++..+...                  .....|.+..     .-...     ..|++
T Consensus       207 ---~s~~l~~~~g~~~p~~~~~~~~~~~~~~~------------------~~~~~p~~~~-----~~~~~~~~~~~~y~~  260 (397)
T 2oln_A          207 ---YTNDLLEPLGARLAYSVYEMAIAAYRQAT------------------PVTEAPFWFA-----FQQPTPQDTNLFYGF  260 (397)
T ss_dssp             ---GHHHHHGGGTCCCCEEEEEEEEEEEEBCS------------------CCSCCCEEEE-----ECCCCSSSCCCEEEC
T ss_pred             ---ChHHHhhhcCCCCCeeEEEEEEEEEeecC------------------cccCCCEEEE-----ecCCCCcccceEEEC
Confidence               98888888776788999999864211000                  0001111100     00011     57999


Q ss_pred             ecCCc----eEEeccccc------cCcccccccccchhhhhhcccccccccccccceeeeeeccc--ccce
Q psy16975        546 PSYGG----LVTLGGTQD------YGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRP--YRHH  604 (728)
Q Consensus       546 P~~dG----~vviGgt~e------~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP--~tpd  604 (728)
                      |..++    ++++|++..      +++.+..++++..+.+++.+.++||.|.. ++.+.|+|+|+  +|+|
T Consensus       261 p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~-~~~~~~~g~~~~p~t~D  330 (397)
T 2oln_A          261 GHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDRLSGWLRDHLPTVDP-DPVRTSTCLAVLPTDPE  330 (397)
T ss_dssp             CCCSSSSSSEEEEEECCCCSCCSSGGGCCSSCCHHHHHHHHHHHHHHCTTBCS-SCSEEEEEEEEEESSTT
T ss_pred             CCCCCCCCceEEEEecCCCCCcCCCccccCCCCHHHHHHHHHHHHHhCCCCCC-CceeEEEEEecCCcCCC
Confidence            98765    799997763      22334556677888999999999999987 78899999987  9999

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.92  E-value=8.8e-27  Score=280.08  Aligned_cols=300  Identities=18%  Similarity=0.195  Sum_probs=202.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc--ccCCCCccccccCCCCCCCCCchhhhhhhhhcccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM--DTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA  324 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g--~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~  324 (728)
                      +.++||+|||||++|+++||+|++  +|+ +|+|||++..+  .++|+.++|++.+..     ......++...+.+.|.
T Consensus         2 ~~~~dVvIIGgGi~Gls~A~~La~--~G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~-----~~~~~~~l~~~s~~~~~   74 (830)
T 1pj5_A            2 ASTPRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGPLNMPGGSTSHAPGLVFQTN-----PSKTMASFAKYTVEKLL   74 (830)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSCTTCCCSGGGTCCCEECCCC-----SCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCcccceeCCceeecCC-----CCHHHHHHHHHHHHHHH
Confidence            456899999999999999999999  898 99999998753  467777888886631     12345566677777777


Q ss_pred             cccccccccE-E-Eccc-ccccchhhhhh----cccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCcc
Q psy16975        325 GLLSENCGVQ-V-INGY-NLAKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRI  392 (728)
Q Consensus       325 ~l~~~~~Gv~-~-~~G~-~~a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~  392 (728)
                      ++.+  .+.. + ..|. .++.+++..+.    ...++..+.++++++++++.+++|.    ....|++++ ++++||..
T Consensus        75 ~l~~--~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~  152 (830)
T 1pj5_A           75 SLTE--DGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAAR  152 (830)
T ss_dssp             HCEE--TTEESEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHH
T ss_pred             HHHh--hCCCCeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHH
Confidence            6642  2222 2 4454 44444443221    2334456778899999999998885    234677776 59999999


Q ss_pred             ceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccc
Q psy16975        393 FLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYN  471 (728)
Q Consensus       393 ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~  471 (728)
                      ++.+|++.++  ++|       ++|+++++ +++...++.          ++.|.+.  .+...++.||+|+     |. 
T Consensus       153 l~~~L~~~a~--~~G-------v~i~~~t~V~~i~~~~~~----------v~~V~t~--~G~i~Ad~VV~Aa-----G~-  205 (830)
T 1pj5_A          153 AVQLLIKRTE--SAG-------VTYRGSTTVTGIEQSGGR----------VTGVQTA--DGVIPADIVVSCA-----GF-  205 (830)
T ss_dssp             HHHHHHHHHH--HTT-------CEEECSCCEEEEEEETTE----------EEEEEET--TEEEECSEEEECC-----GG-
T ss_pred             HHHHHHHHHH--HcC-------CEEECCceEEEEEEeCCE----------EEEEEEC--CcEEECCEEEECC-----cc-
Confidence            9999999998  888       99999988 455433222          2223333  3333444999999     99 


Q ss_pred             cccchhhhhhcccccccchhccccCHHHHh-hcCCCCcceeEeEEeeeec-CccccchhcccchHHHHHhhceeeeecCC
Q psy16975        472 LAKSEKQCAENHYLKPVLPVYKRMSEEELA-EIGPGDWKYGIYMSTLVIP-NRIFLPWCMQKNFASLVRLAGAYIIPSYG  549 (728)
Q Consensus       472 ~~~S~~L~~~~gi~lpv~PvRGQl~~~el~-~~~p~~w~~G~~~~Tlvve-~~~~~P~l~~~~~~~~i~~~~~YiiP~~d  549 (728)
                        |+..+....++.+|+.|++||++.++.. ....  .         ... .....|.+..       .+...|++|..+
T Consensus       206 --~s~~l~~~~g~~~pl~p~~g~~~~~~~~~~~~~--~---------~~~~~~~~~pv~~~-------~~~~~y~r~~~~  265 (830)
T 1pj5_A          206 --WGAKIGAMIGMAVPLLPLAHQYVKTTPVPAQQG--R---------NDQPNGARLPILRH-------QDQDLYYREHGD  265 (830)
T ss_dssp             --GHHHHHHTTTCCCCCEEEEEEEEEESCCGGGTT--T---------SCTTTCCCSCEEEE-------GGGTEEEEEETT
T ss_pred             --chHHHHHHhCCCccceeceeEEEEEecCccccc--c---------cccccCCCCCeEEc-------CCCCEEEEEeCC
Confidence              9998887777778999999996421100 0000  0         000 0000111110       134678998876


Q ss_pred             ceEEecccccc---------Cc------------ccccccccchhhhhhcccccccccccccceeeeeecccccce
Q psy16975        550 GLVTLGGTQDY---------GN------------ARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       550 G~vviGgt~e~---------~~------------~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd  604 (728)
                       .+++|++...         ..            .+..++.+..+.+++.+.+++|.|.+.++.+.|+|+||+|+|
T Consensus       266 -~l~iG~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~t~D  340 (830)
T 1pj5_A          266 -RYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFSFTPD  340 (830)
T ss_dssp             -EEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEEEEEECTT
T ss_pred             -eEEEeccCCCCcccCcccccccccccccccccccccCCCHHHHHHHHHHHHHhCccccccCcceEEEeecccCCC
Confidence             6888887421         00            123345566788999999999999999999999999999999

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.92  E-value=1.1e-26  Score=264.08  Aligned_cols=298  Identities=12%  Similarity=0.065  Sum_probs=193.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS  328 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~  328 (728)
                      ..+||+|||||++|+++|++|++  +|++|+|||++.++.++|++++|++++.....   .....++.+++++.+..+.+
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~--~G~~V~llE~~~~~~gtS~~s~gli~~g~~~~---~~~~~~l~~~~~~~~~~l~~   76 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAG--RGLSVLMLEAQDLACATSSASSKLIHGGLRYL---EHYEFRLVSEALAEREVLLK   76 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSGGGSSCCEECCCGGGG---GGTCHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh--CCCCEEEEECCCCCCCccccccccccccchhh---hhchHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999  89999999999888999999999998732111   11223444444444433321


Q ss_pred             cccccEEEcccccccchh-----hhhh-cccccccchhccccCHHHHhhcC--CC---CcceeEeEEeeeecCccceecc
Q psy16975        329 ENCGVQVINGYNLAKSEK-----QCAE-NHYLKPVLPVYKRMSEEELAEIG--PG---DWKYGIYMSTLVIPNRIFLPWC  397 (728)
Q Consensus       329 ~~~Gv~~~~G~~~a~~~~-----~~~~-~~~~~~~g~~~~~L~~~el~~~~--P~---~~~~G~~~~~g~idp~~ll~~L  397 (728)
                      ....+....++.+..+..     .... ...+...+ ..++++++++.+++  |.   ....|++++++++||..++.+|
T Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l  155 (501)
T 2qcu_A           77 MAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLG-KRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLAN  155 (501)
T ss_dssp             HCTTTEEEEEEEEECCTTTSCHHHHHHHHHHHHSSS-CCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHH
T ss_pred             hCCccccccCeEeccCcccchHHHHHHHHHHHHhcC-CcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHH
Confidence            000111111211111100     0000 01111112 57888888888777  75   2456777778999999999999


Q ss_pred             cccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHH---hhhc-cccccccccccccEEEccccc
Q psy16975        398 MQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQR---AMQH-DHYAGLLSENCGVQVINGYNL  472 (728)
Q Consensus       398 ~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t---~~~~-g~ada~~VVnAa~~viaG~~~  472 (728)
                      ++.+.  ++|       ++|+++++ +++...+ ..          +++.+   ..+. ....++.||||+     |.  
T Consensus       156 ~~~a~--~~G-------v~i~~~~~V~~l~~~~-~~----------~~V~~~d~~~G~~~~i~A~~VV~At-----G~--  208 (501)
T 2qcu_A          156 AQMVV--RKG-------GEVLTRTRATSARREN-GL----------WIVEAEDIDTGKKYSWQARGLVNAT-----GP--  208 (501)
T ss_dssp             HHHHH--HTT-------CEEECSEEEEEEEEET-TE----------EEEEEEETTTCCEEEEEESCEEECC-----GG--
T ss_pred             HHHHH--HcC-------CEEEcCcEEEEEEEeC-CE----------EEEEEEECCCCCEEEEECCEEEECC-----Ch--
Confidence            99998  888       89999888 4554332 11          11211   1000 123444999999     99  


Q ss_pred             ccchhhhhh-ccc--ccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCC
Q psy16975        473 AKSEKQCAE-NHY--LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYG  549 (728)
Q Consensus       473 ~~S~~L~~~-~gi--~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~d  549 (728)
                       |+..+.+. .+.  ..++.|.||+.+                     +++.  ..+......++ .......|++|..+
T Consensus       209 -~s~~l~~~~l~~~~~~~i~p~rG~~~---------------------~~~~--~~~~~~~~~~~-~~dg~~~~~~P~~~  263 (501)
T 2qcu_A          209 -WVKQFFDDGMHLPSPYGIRLIKGSHI---------------------VVPR--VHTQKQAYILQ-NEDKRIVFVIPWMD  263 (501)
T ss_dssp             -GHHHHHHHHTCCCCSSCBCCEEEEEE---------------------EEEC--SSSCSCEEEEE-CTTSCEEEEEEETT
T ss_pred             -hHHHHHHHhccCCcccccccceeEEE---------------------EECC--CCCCceEEEee-cCCCCEEEEEEcCC
Confidence             99888764 331  257899999953                     2210  00100000000 00123579999998


Q ss_pred             ceEEecccccc---Ccccccccccchhhhhhccccccc-ccccccceeeeeecccccce
Q psy16975        550 GLVTLGGTQDY---GNARLGVDRFDSRAILNRTAAVRP-EILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       550 G~vviGgt~e~---~~~d~~~~~~~~~~ll~~~~~l~P-~L~~~~I~~~waGlRP~tpd  604 (728)
                      |.+++|+|.+.   +.++..++++..+.+++.+.++|| .|...+|+..|+|+||.++|
T Consensus       264 g~~~iG~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~l~~~~v~~~~aG~Rp~~~d  322 (501)
T 2qcu_A          264 EFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDD  322 (501)
T ss_dssp             TEEEEECCCEECCSCGGGCCCCHHHHHHHHHHHHHHBSSCCCGGGCCEEEEEEECCBCC
T ss_pred             CcEEEcCCCCCCCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEEEEEEeeecCC
Confidence            99999999765   345677888899999999999999 89999999999999999998

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.92  E-value=4.4e-26  Score=253.20  Aligned_cols=335  Identities=14%  Similarity=0.150  Sum_probs=211.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCC-cEEEeecccccccCCC--CccccccCCCCCCCCCchhhh------hhhh
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDTTSD--GAAGLFEPSPNFMGPDLETTK------EWIR  317 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g~gAS~--~agGii~p~~~l~~~~~~~~~------~~~~  317 (728)
                      |+.++||+|||||++||++|++|++  +|+ +|+|||++..+.+.|.  ..+.++...  ...   ....      ++..
T Consensus         3 ~~~~~dVvIIGgG~aGlsaA~~La~--~G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~l~~   75 (438)
T 3dje_A            3 VTKSSSLLIVGAGTWGTSTALHLAR--RGYTNVTVLDPYPVPSAISAGNDVNKVISSG--QYS---NNKDEIEVNEILAE   75 (438)
T ss_dssp             CCTTSCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSCSSCTTCTTCSSCEEECCC--CSC---CCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEEeCCCCCCCCccCCCCccEEEec--cCC---chhhhcchhHHHHH
Confidence            3456899999999999999999999  899 9999999876554433  223333331  111   2344      6677


Q ss_pred             hcccccccccccccccEE-Eccccc-ccchhhhhhc-ccc-cccchhc-cccCHHHHhhcCCC-----Ccce--eEeEE-
Q psy16975        318 YSYDHYAGLLSENCGVQV-INGYNL-AKSEKQCAEN-HYL-KPVLPVY-KRMSEEELAEIGPG-----DWKY--GIYMS-  384 (728)
Q Consensus       318 ~s~~~~~~l~~~~~Gv~~-~~G~~~-a~~~~~~~~~-~~~-~~~g~~~-~~L~~~el~~~~P~-----~~~~--G~~~~-  384 (728)
                      ++++.|.++.  .....+ ..|.+. +.++...+.. ..+ ...+.++ ++++.+++.+++|.     .+..  |++++ 
T Consensus        76 ~~~~~~~~~~--~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~  153 (438)
T 3dje_A           76 EAFNGWKNDP--LFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARS  153 (438)
T ss_dssp             HHHHHHHHCT--TTGGGEECCCEEEEECSHHHHHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESS
T ss_pred             HHHHHHhhCc--cccCcEeccceEEEecCcchHHHHHHHHhhcccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCC
Confidence            7777666542  111222 445433 3333332211 111 1345555 78899999988883     2334  67766 


Q ss_pred             e-eeecCccceecccccCCCCCCCCCCceeeEEEEEee---C-ceeEEEeccccccccCCcchhHHHHhhhcc-cccccc
Q psy16975        385 T-LVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYN---R-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHD-HYAGLL  458 (728)
Q Consensus       385 ~-g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t---~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g-~ada~~  458 (728)
                      + ++++|..++.+|.+.++  ++|       ++|++++   + +++...++.          +.+|.+.  .+ .+.++.
T Consensus       154 ~~g~~~~~~~~~~L~~~a~--~~G-------v~i~~~t~~~~V~~i~~~~~~----------v~gV~t~--~G~~i~Ad~  212 (438)
T 3dje_A          154 GAGWAHARNALVAAAREAQ--RMG-------VKFVTGTPQGRVVTLIFENND----------VKGAVTA--DGKIWRAER  212 (438)
T ss_dssp             SCEEECHHHHHHHHHHHHH--HTT-------CEEEESTTTTCEEEEEEETTE----------EEEEEET--TTEEEECSE
T ss_pred             CCEEecHHHHHHHHHHHHH--hcC-------CEEEeCCcCceEEEEEecCCe----------EEEEEEC--CCCEEECCE
Confidence            6 89999999999999998  888       9999998   6 444433222          2234443  33 334449


Q ss_pred             ccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHH-
Q psy16975        459 SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLV-  537 (728)
Q Consensus       459 VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i-  537 (728)
                      ||+|+     |.   |+..|++ .+  .++.|.++++.                   ++.+.......+ ..  .+.+. 
T Consensus       213 VV~At-----G~---~s~~l~~-l~--~~~~p~~~~~~-------------------~~~l~~~~~~~~-~~--~p~~~~  259 (438)
T 3dje_A          213 TFLCA-----GA---SAGQFLD-FK--NQLRPTAWTLV-------------------HIALKPEERALY-KN--IPVIFN  259 (438)
T ss_dssp             EEECC-----GG---GGGGTSC-CT--TCCEEEEEEEE-------------------EEECCGGGHHHH-TT--CCEEEE
T ss_pred             EEECC-----CC---ChhhhcC-cc--cceeeEEEEEE-------------------EEEcChHHhhhh-cC--CCEEEE
Confidence            99999     99   9998876 33  45677655432                   111100000000 00  00011 


Q ss_pred             HhhceeeeecCC-ceEEec----cccccCc------c-----cccccccchhhhhhcccccccccccccceeeeeecccc
Q psy16975        538 RLAGAYIIPSYG-GLVTLG----GTQDYGN------A-----RLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPY  601 (728)
Q Consensus       538 ~~~~~YiiP~~d-G~vviG----gt~e~~~------~-----d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~  601 (728)
                      .+...|+.|..+ +.+++|    |......      .     +...+.+..+.+.+.+.++||.|.+.++.+.|+|+||+
T Consensus       260 ~~~~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~~~~  339 (438)
T 3dje_A          260 IERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIPFEKTQIPKEAETRVRALLKETMPQLADRPFSFARICWCAD  339 (438)
T ss_dssp             TTTEEECSCCTTTCEEEEEECCSCEECEEECTTCCEEECCCCCSSCBHHHHHHHHHHHHHHCGGGTTCCCSEEEEEEEEE
T ss_pred             CCCceecCCCCCCCeEEEEeCCCCccCCccCCCcccccCCcccccCCHHHHHHHHHHHHHhCcccccCCcceeeEEEeCc
Confidence            134567778744 557774    2211100      0     12334456788999999999999999999999999999


Q ss_pred             cce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcce
Q psy16975        602 RHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMH  679 (728)
Q Consensus       602 tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~  679 (728)
                      |+|  +.|...                                                                     
T Consensus       340 t~D~~piig~~---------------------------------------------------------------------  350 (438)
T 3dje_A          340 TANREFLIDRH---------------------------------------------------------------------  350 (438)
T ss_dssp             CTTSCCEEEEC---------------------------------------------------------------------
T ss_pred             CCCCCeEEeec---------------------------------------------------------------------
Confidence            999  322110                                                                     


Q ss_pred             EEe-ecCceEEEEeecccCccccccCCCCceeeeeeeeccc
Q psy16975        680 VIP-VRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSH  719 (728)
Q Consensus       680 ~~~-~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~  719 (728)
                        | .+|    +|+++||+|+||+++|++|+.+|++|.+..
T Consensus       351 --p~~~~----l~~a~G~~g~G~~~ap~~g~~la~~i~g~~  385 (438)
T 3dje_A          351 --PQYHS----LVLGCGASGRGFKYLPSIGNLIVDAMEGKV  385 (438)
T ss_dssp             --SSCTT----EEEEECCTTCCGGGTTTHHHHHHHHHHTCC
T ss_pred             --CCCCC----EEEEECCCCcchhhhHHHHHHHHHHHhCCC
Confidence              1 123    789999999999999999999999997653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.92  E-value=9.4e-27  Score=268.85  Aligned_cols=303  Identities=15%  Similarity=0.066  Sum_probs=193.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS  328 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~  328 (728)
                      ..+||+||||||+|+++|++|++  +|++|+|||++.++.++|++++|+++..............+.+...++.+.++..
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~--rG~~V~LlE~~~~~~GtS~~s~gli~~g~ryl~~~~~~l~~~~~~e~~~l~~~~~  108 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAA--SGIKTGLIEMQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAP  108 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSGGGSSCSEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccccccccccchhhccChHHHHHHHHHHHHHHHhCc
Confidence            56899999999999999999999  8999999999988899999999998863211110001111111222222222221


Q ss_pred             ---cccccEE----Ecccc-cccc-----hhhhhhcccccccchhccccCHHHHhhcCCC----CcceeEeEEeeeecCc
Q psy16975        329 ---ENCGVQV----INGYN-LAKS-----EKQCAENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMSTLVIPNR  391 (728)
Q Consensus       329 ---~~~Gv~~----~~G~~-~a~~-----~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~~g~idp~  391 (728)
                         ...+..+    ..|.. +...     ....+........+...++|+++++.+++|.    ...+|++++++++||.
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~e~~~~~P~l~~~~~~gg~~~~dg~v~~~  188 (571)
T 2rgh_A          109 HIPKPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFLKKEGLKGAGVYLDFRNNDA  188 (571)
T ss_dssp             TSSEECCEEEEEESSSSSCSCCHHHHHHHHHHHHHHHTCSSSTTCCEEECHHHHHHHCTTSCCTTEEEEEEECCEECCHH
T ss_pred             ccccccCceEEeecccccccccHHHHHHHHHHHHHHhhhhccCCCcEEECHHHHHHhCcCCchhhceEEEEecCCeEchH
Confidence               0111111    01111 1000     0000111112235667899999999998886    2456778888999999


Q ss_pred             cceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHH-----Hhhhcc-cccccccccccc
Q psy16975        392 IFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQ-----RAMQHD-HYAGLLSENCGV  464 (728)
Q Consensus       392 ~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~-----t~~~~g-~ada~~VVnAa~  464 (728)
                      .++.+|++.+.  ++|       ++|+++|+ +++...++.+          ++|.     +.  .+ ...++.||||+ 
T Consensus       189 ~l~~~l~~~a~--~~G-------a~i~~~t~V~~l~~~~~~v----------~gV~~~d~~tg--~~~~i~A~~VV~Aa-  246 (571)
T 2rgh_A          189 RLVIDNIKKAA--EDG-------AYLVSKMKAVGFLYEGDQI----------VGVKARDLLTD--EVIEIKAKLVINTS-  246 (571)
T ss_dssp             HHHHHHHHHHH--HTT-------CEEESSEEEEEEEEETTEE----------EEEEEEETTTC--CEEEEEBSCEEECC-
T ss_pred             HHHHHHHHHHH--HcC-------CeEEeccEEEEEEEeCCEE----------EEEEEEEcCCC--CEEEEEcCEEEECC-
Confidence            99999999998  888       99999988 5555433321          1121     11  11 23444999999 


Q ss_pred             EEEcccccccchhhhhhcccc---cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhc
Q psy16975        465 QVINGYNLAKSEKQCAENHYL---KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAG  541 (728)
Q Consensus       465 ~viaG~~~~~S~~L~~~~gi~---lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~  541 (728)
                          |.   |+..+....+..   .++.|+||+++..+....                  ....+.+...   .......
T Consensus       247 ----G~---ws~~l~~~~g~~~~~~~i~p~rG~~l~~~~~~~------------------~~~~~~~~~~---~~~dgr~  298 (571)
T 2rgh_A          247 ----GP---WVDKVRNLNFTRPVSPKMRPTKGIHLVVDAKKL------------------PVPQPTYFDT---GKQDGRM  298 (571)
T ss_dssp             ----GG---GHHHHHTTCCSSCCCCCBCCEEEEEEEEEGGGS------------------CCSSCEEEEC---SSSSSCE
T ss_pred             ----Ch---hHHHHHHhhccCccCceeeccceEEEEeccccC------------------CCCcEEEEec---cCCCCcE
Confidence                99   999888765532   468999999642111000                  0000100000   0001234


Q ss_pred             eeeeecCCceEEecccccc---Ccccccccccchhhhhhcccccccc--cccccceeeeeecccccce
Q psy16975        542 AYIIPSYGGLVTLGGTQDY---GNARLGVDRFDSRAILNRTAAVRPE--ILAAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       542 ~YiiP~~dG~vviGgt~e~---~~~d~~~~~~~~~~ll~~~~~l~P~--L~~~~I~~~waGlRP~tpd  604 (728)
                      .|++|.. |.+++|+|.+.   +.++..+++++.+.|++.+.++||.  +...+|+..|+|+||.++|
T Consensus       299 ~~~~P~~-~~~~iG~t~~~~~~~~~~~~~~~~~~~~ll~~~~~~~P~~~l~~~~v~~~waG~Rp~~~d  365 (571)
T 2rgh_A          299 VFAIPRE-NKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPEANITLADIEASWAGLRPLLIG  365 (571)
T ss_dssp             EEEEEET-TEEEECCCCEECCSCSSSCCCCHHHHHHHHHHHHHHSTTTCCCGGGCCEEEEEEECCBCC
T ss_pred             EEEEEcC-CeEEEcCCCcCCCCCcCCCCCCHHHHHHHHHHHHHhcCccCCchhceeEEeEEeeeccCC
Confidence            6899985 67999999764   3456778888999999999999997  4778999999999999987

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.89  E-value=4.8e-25  Score=254.06  Aligned_cols=302  Identities=16%  Similarity=0.113  Sum_probs=186.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhccc---ccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYD---HYA  324 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~---~~~  324 (728)
                      +..+||+|||||++|+++|+.|++  +|++|+|||++..+.++|+++.++++........   ...++..+...   .+.
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~--~G~~V~LlEk~d~~~GtS~~ss~lihgG~ryl~~---~~~~l~~e~~~e~~~l~   90 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQV--RGIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQ---FEIKLVAEVGKERAIVY   90 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSTTCSGGGSSCCEECC------------------CHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCcccCCcCccccchHHHHh---cCHHHHHHHHHHHHHHH
Confidence            357999999999999999999999  9999999999988889999999888653211110   00011111110   011


Q ss_pred             cccc---cccc--cEEE-cccc-cccchhhhhhcccc--cccchhccccCHHHHhhcCCC----CcceeEeEEeeeecCc
Q psy16975        325 GLLS---ENCG--VQVI-NGYN-LAKSEKQCAENHYL--KPVLPVYKRMSEEELAEIGPG----DWKYGIYMSTLVIPNR  391 (728)
Q Consensus       325 ~l~~---~~~G--v~~~-~G~~-~a~~~~~~~~~~~~--~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~~g~idp~  391 (728)
                      +...   ....  +.+. .+.. .+...........+  .......+.++.+++.+++|.    ...+|++++++++||.
T Consensus        91 ~~ap~l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~dg~vd~~  170 (561)
T 3da1_A           91 ENAPHVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDA  170 (561)
T ss_dssp             HHCTTTCEEEEEEEEECC---------------------------CEEECHHHHHHHCTTSCCTTCCEEEEEEEEECCHH
T ss_pred             HhCchhccccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccCChhhceeEEEecCceEcHH
Confidence            1110   0000  1111 1111 01111110001111  112456788999999988885    2456788888999999


Q ss_pred             cceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhh----hccccccccccccccEE
Q psy16975        392 IFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAM----QHDHYAGLLSENCGVQV  466 (728)
Q Consensus       392 ~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~----~~g~ada~~VVnAa~~v  466 (728)
                      .++.+|++.+.  ++|       ++|+++++ +++...++.+.          +|....    ......++.||||+   
T Consensus       171 ~l~~~L~~~a~--~~G-------~~i~~~~~V~~l~~~~g~v~----------gV~~~d~~tg~~~~i~A~~VV~Aa---  228 (561)
T 3da1_A          171 RLTLEIMKEAV--ARG-------AVALNYMKVESFIYDQGKVV----------GVVAKDRLTDTTHTIYAKKVVNAA---  228 (561)
T ss_dssp             HHHHHHHHHHH--HTT-------CEEEESEEEEEEEEETTEEE----------EEEEEETTTCCEEEEEEEEEEECC---
T ss_pred             HHHHHHHHHHH--HcC-------CEEEcCCEEEEEEEcCCeEE----------EEEEEEcCCCceEEEECCEEEECC---
Confidence            99999999998  888       99999998 55654433321          111110    01233444999999   


Q ss_pred             Ecccccccchhhhhhcccc--cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceee
Q psy16975        467 INGYNLAKSEKQCAENHYL--KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYI  544 (728)
Q Consensus       467 iaG~~~~~S~~L~~~~gi~--lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~Yi  544 (728)
                        |.   |+..+....+..  .++.|.||+.+                     +++.. ..|......++........|+
T Consensus       229 --G~---~s~~l~~~~g~~~~~~v~p~kG~~l---------------------vl~~~-~~~~~~~~~~~~~~dgr~v~~  281 (561)
T 3da1_A          229 --GP---WVDTLREKDRSKHGKYLKLSKGVHL---------------------VVDQS-RFPLRQAVYFDTESDGRMIFA  281 (561)
T ss_dssp             --GG---GHHHHHHTTTCCCSSEEEEEEEEEE---------------------EEEGG-GSCCSSEEEECCSSSCCCEEE
T ss_pred             --Cc---chHHHHHhcCCCCCceEEeccEEEE---------------------EECCc-cCCCceEEEeccCCCCcEEEE
Confidence              99   998888776643  57899999853                     22100 001000000000001234689


Q ss_pred             eecCCceEEecccccc---Ccccccccccchhhhhhcccccccccc--cccceeeeeecccccce
Q psy16975        545 IPSYGGLVTLGGTQDY---GNARLGVDRFDSRAILNRTAAVRPEIL--AAPVEKVWVGLRPYRHH  604 (728)
Q Consensus       545 iP~~dG~vviGgt~e~---~~~d~~~~~~~~~~ll~~~~~l~P~L~--~~~I~~~waGlRP~tpd  604 (728)
                      +|. +|.+++|+|.+.   +..+..+++++++.+++.+.++||.+.  ..+|+..|+|+||.++|
T Consensus       282 iP~-~g~~~iGtT~~~~~~~~~~~~~t~~~i~~ll~~~~~~~P~l~~~~~~v~~~~aGlRPl~~~  345 (561)
T 3da1_A          282 IPR-EGKTYIGTTDTFYDKDIASPRMTVEDRDYILAAANYMFPSLRLTADDVESSWAGLRPLIHE  345 (561)
T ss_dssp             EEE-TTEEEECCCCEEECSCTTCCCCCHHHHHHHHHHHHHHCTTCCCCTTTEEEEEEEEEEEEEC
T ss_pred             Eec-CCCEEEcCCCCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCCChhhEEEEeEEeccccCC
Confidence            999 778999999864   345778889999999999999999987  78999999999999876

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.80  E-value=5.9e-10  Score=122.19  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +++||+|||||++|+++|++|++  .|++|+|||+...+
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~~~   40 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKFP   40 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence            45899999999999999999999  89999999998643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.57  E-value=6.9e-09  Score=111.52  Aligned_cols=36  Identities=17%  Similarity=0.137  Sum_probs=33.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |.+|||+|||||++||++|+.|++  .|++|+||||..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~   37 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            356999999999999999999999  999999999964

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.51  E-value=6.2e-10  Score=128.06  Aligned_cols=72  Identities=15%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             CCceeeEEeecCCCCCCCccccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        227 GDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       227 ~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ...|...|.+........+....++||+|||||++||++|++|++  .|.+|+||||.....++|..++|.+..
T Consensus        98 ~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~~s~gg~~~  169 (566)
T 1qo8_A           98 KKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGNSMISAGGMNA  169 (566)
T ss_dssp             CCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccCceeEc
Confidence            446766665542110000012357899999999999999999999  899999999988777788877776654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.44  E-value=5.7e-09  Score=115.77  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ||+.++||+|||||++|+++|++|++  .|.+|+|||+....
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~--~G~~V~llEk~~~~   62 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGK--RGRRVLVIDHARAP   62 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            55678999999999999999999999  89999999998643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.28  E-value=2.2e-08  Score=115.27  Aligned_cols=50  Identities=22%  Similarity=0.317  Sum_probs=43.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      .++||+|||||++||++|+.|++  .|.+|+||||.....++|..++|.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~~a~gg~~~  174 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAKLAAGGMNA  174 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchhhcCceEEe
Confidence            36899999999999999999999  899999999988767777777665544

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.23  E-value=4.2e-07  Score=89.55  Aligned_cols=35  Identities=31%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |++||+|||||++||++|+.|++  .|++|+||||..
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~--~G~~V~v~Ek~~   35 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSR   35 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCC
Confidence            35799999999999999999999  999999999964

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.23  E-value=4.2e-08  Score=108.15  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=33.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.++||+|||||++|+++|++|++  .|.+|+|||+..
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~--~G~~V~vlEk~~   37 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGK   37 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            356899999999999999999999  899999999976

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.22  E-value=9.8e-08  Score=106.41  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=33.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .+++||+|||||++|+++|++|++  .|.+|+|||+....
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~--~G~~V~llEk~~~~   61 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKL   61 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHH--CCCCEEEEECCCCC
Confidence            346899999999999999999999  89999999997643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.16  E-value=7.1e-07  Score=102.84  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +++||+|||||++||++|++|++  .|++|+|||+...
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCC
Confidence            46899999999999999999999  8999999999754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.13  E-value=3.5e-07  Score=104.69  Aligned_cols=49  Identities=29%  Similarity=0.331  Sum_probs=34.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      .++||+|||||++||++|++|++   |.+|+||||.....++|..++|.+..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~~~~g~s~~a~Ggi~~   55 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGPVTEGSTFYAQGGIAA   55 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSCTTC------------
T ss_pred             CCCCEEEECccHHHHHHHHHHhc---CCcEEEEECCCCCCCChhhcCCCEEE
Confidence            46899999999999999999998   78999999998777777777665544

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.90  E-value=4e-06  Score=94.99  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=44.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ..++||+|||||++||++|++|++  .|.+|+||||.....++|..++|.+.
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~--~G~~V~vlEk~~~~GG~s~~s~G~~~   88 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAAR--AGADVLVLERTSGWGGATALAGGFIY   88 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGSCCCEE
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcchhcCccee
Confidence            356899999999999999999999  89999999999877788888877654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.81  E-value=5.8e-06  Score=92.63  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMD  288 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~  288 (728)
                      .+++||+|||||++||++|++|++. .|++|+|+|+.. +|+
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPGG   48 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCCG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCcC
Confidence            3468999999999999999999973 499999999975 443

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.81  E-value=1.1e-05  Score=84.59  Aligned_cols=38  Identities=26%  Similarity=0.394  Sum_probs=33.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      |..|||+|||||.+|+++|++|++  .|++|+|||++.++
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~~~g   41 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGR--ARKQIALFDNNTNR   41 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCG
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            567999999999999999999999  89999999997654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.80  E-value=7.8e-06  Score=89.65  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=33.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc-cccccCC
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNMDTTS  291 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g~gAS  291 (728)
                      +||+|||||++|+++|++|++  .|++|+|||+. .++..++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~   41 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTN--AGKKVLLLEGGERLGGRAY   41 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCccCeec
Confidence            699999999999999999999  89999999985 4554443

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.77  E-value=1.1e-05  Score=84.58  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=34.7

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ...+|||+|||||.+|+++|++|++  .|++|+|||++.++
T Consensus         3 te~~yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~~~~g   41 (312)
T 4gcm_A            3 TEIDFDIAIIGAGPAGMTAAVYASR--ANLKTVMIERGIPG   41 (312)
T ss_dssp             -CCSEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC
Confidence            3457999999999999999999999  89999999997654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.76  E-value=1.1e-05  Score=88.19  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +||+|||||++||++|++|++  .|++|+|||++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~   34 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK--AGHEVEVFERLPI   34 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCceEEEeCCCC
Confidence            489999999999999999999  8999999999754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.76  E-value=8.4e-06  Score=95.44  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=41.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCc-cccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~a-gGii~p  300 (728)
                      .++||+|||||++||++|++|++  .|.+|+||||..+..+.|..+ ||+...
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae--~G~~V~vlEK~~~~~g~s~~a~GGi~a~   54 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVKRSHSAAAQGGMQAS   54 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGGGSGGGGCCSCEECC
T ss_pred             ccccEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCCCCcccccCCCeEec
Confidence            46899999999999999999999  899999999988765555544 454443

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.72  E-value=8.2e-06  Score=90.09  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=33.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC------CcEEEeecc-cccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN------CDVTVIADK-FNMD  288 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G------~~VtVIEk~-~~g~  288 (728)
                      +++||+|||||++||++|++|++  .|      ++|+|+|+. .+|.
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~--~G~~~~~~~~V~vlEa~~~~GG   48 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEK--EIKEKNLPLELTLVEASPRVGG   48 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHH--HHTTTTCSEEEEEECSSSSSCT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--hccccCCCCCEEEEECCCCCCc
Confidence            35799999999999999999999  77      999999996 4443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.71  E-value=1.5e-05  Score=83.28  Aligned_cols=39  Identities=23%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      |...|||+|||||.+|+++|++|++  .|++|+|+|+...+
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~~~g   39 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGFMAG   39 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSGG
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC
Confidence            4456999999999999999999999  89999999997654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.70  E-value=1.8e-05  Score=82.60  Aligned_cols=38  Identities=32%  Similarity=0.556  Sum_probs=33.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCC-CCcEEEeecccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFNMD  288 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~~g~  288 (728)
                      .++||+|||||++|+++|++|++  . |.+|+|||+.....
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~--~~G~~V~viEk~~~~g   76 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISK--NPNVQVAIIEQSVSPG   76 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT--STTSCEEEEESSSSCC
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCCeEEEEECCCCCC
Confidence            45799999999999999999999  6 99999999976433

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.69  E-value=1.5e-05  Score=88.49  Aligned_cols=39  Identities=28%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc-ccccC
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF-NMDTT  290 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~-~g~gA  290 (728)
                      ++||+|||||++||++||+|++  .|.  +|+|+|+.. +|..+
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~--~G~~~~V~vlEa~~~~GG~~   43 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSR--APCPPKVVLVESSERLGGWI   43 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHT--SSSCCEEEEECSSSSSBTTC
T ss_pred             CceEEEECCcHHHHHHHHHHHh--CCCCCcEEEEeCCCCCCCce
Confidence            3699999999999999999999  899  999999964 44433

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.69  E-value=1.4e-05  Score=92.45  Aligned_cols=49  Identities=18%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCc-ccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~a-gGii~  299 (728)
                      .++||+|||||++||++|++|++  .|.+|+||||.....+.|..+ ||+..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~--~G~~V~vlEK~~~~~g~s~~a~GGi~~   55 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRSHTVSAQGGITV   55 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGGGSGGGGCCSCEEC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcchhhCCccEE
Confidence            46899999999999999999999  899999999987665555544 45443

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.68  E-value=1.3e-05  Score=89.15  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |.+++||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         3 m~~~~dVvIVGaG~aGl~aA~~La~--~G~~V~vlE~~~~   40 (453)
T 3atr_A            3 KELKYDVLIIGGGFAGSSAAYQLSR--RGLKILLVDSKPW   40 (453)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHSS--SSCCEEEECSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence            4457899999999999999999999  8999999999754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.68  E-value=1.3e-05  Score=89.71  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .+|||||||+.||++|++|++  .|++|+|+|++..
T Consensus         2 k~VvVIGaG~~GL~aA~~La~--~G~~V~VlEa~~~   35 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQA--AGIPVLLLEQRDK   35 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH--TTCCEEEECCC--
T ss_pred             CCEEEECCcHHHHHHHHHHHH--CCCcEEEEccCCC
Confidence            379999999999999999999  9999999999753

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.67  E-value=1.5e-05  Score=88.64  Aligned_cols=46  Identities=22%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCC--CcEEEeeccc-ccc-cCCCCcccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF-NMD-TTSDGAAGL  297 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~-~g~-gAS~~agGi  297 (728)
                      ++||+|||||++||++|++|++  .|  ++|+|+|+.. ++. ..|...+|+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~--~g~~~~v~v~E~~~~~GG~~~~~~~~g~   53 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAER--AFPDLNITLLEAGERLGGKVATYREDGF   53 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHH--HCTTSEEEEECSSSSSBTTCCEECSTTC
T ss_pred             cccEEEECCCHHHHHHHHHHHH--hCCCCCEEEEECCCCCCceeEEEeeCCE
Confidence            5799999999999999999999  67  9999999964 332 244444553

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.66  E-value=1.9e-05  Score=86.65  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=31.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++||++|++|++  .|++|+|+|+..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLAR--NGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            389999999999999999999  899999999975

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.66  E-value=1.5e-05  Score=92.66  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=42.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCc-cccccC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP  300 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~a-gGii~p  300 (728)
                      ..++||+|||||++||++|++|++  .|.+|+||||..+..+.|..+ ||+...
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~--~G~~V~vlEK~~~~~g~s~~a~GGi~a~   67 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSE--AGFNTACVTKLFPTRSHTVAAQGGINAA   67 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGGGSGGGGCCSCEECC
T ss_pred             cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhhCCCcEec
Confidence            456899999999999999999999  899999999987766666555 444443

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.61  E-value=1.2e-05  Score=87.07  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=32.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCC
Confidence            4799999999999999999999  8999999999764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.61  E-value=2.4e-05  Score=82.14  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=39.2

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      +.+.+||+|||||++|+++|++|++  .|++|+|||+..   ..+...+|.|..
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~vie~~~---~~~~~~gg~~~~   67 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLAR--AEIKPILYEGMM---ANGIAAGGQLTT   67 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSS---BTTBCTTCGGGG
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCC---CCCCCcCccccc
Confidence            4557899999999999999999999  899999999975   334455666554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.58  E-value=2.8e-05  Score=86.68  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=34.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+..+||+|||||+.||++|+.|++  .|++|+|+|++.
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~--~G~~V~vlE~~~   44 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQD   44 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            4457899999999999999999999  999999999975

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.57  E-value=2.6e-05  Score=85.04  Aligned_cols=37  Identities=32%  Similarity=0.459  Sum_probs=32.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+..+||+|||||++||++|+.|++  .|++|+|||+..
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~E~~~   56 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVK   56 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            3457899999999999999999999  899999999975

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.56  E-value=3.3e-05  Score=87.94  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=34.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhC-CCCcEEEeecccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNMD  288 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~-~G~~VtVIEk~~~g~  288 (728)
                      ..+||+|||||++|+++|++|++.. +|++|+|||+...+.
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~   44 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR   44 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC
Confidence            4679999999999999999999954 689999999976543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.55  E-value=3.8e-05  Score=88.83  Aligned_cols=39  Identities=31%  Similarity=0.353  Sum_probs=35.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +|+.+||+|||||++|+++|++|++  .|++|+|||+...+
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~~   58 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAFP   58 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCCC
Confidence            4457999999999999999999999  89999999998644

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.53  E-value=3.4e-05  Score=86.69  Aligned_cols=45  Identities=31%  Similarity=0.441  Sum_probs=38.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      ||+|||||++|+++|++|++  .|.+|+||||. ...++|.++.|.+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~--~G~~V~viek~-~~~g~s~~a~Ggi~   45 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR--AGKKVTLISKR-IDGGSTPIAKGGVA   45 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-TTCSSGGGCCSCEE
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC-CCCchHHHHhCCeE
Confidence            79999999999999999999  89999999999 55566666555443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.52  E-value=3.4e-05  Score=84.42  Aligned_cols=36  Identities=36%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~  285 (728)
                      +..+||+|||||++||++|+.|++  .|++ |+|||+..
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~--~G~~~v~v~E~~~   38 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSS   38 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCC
Confidence            456899999999999999999999  8999 99999975

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.51  E-value=4.3e-05  Score=85.39  Aligned_cols=39  Identities=36%  Similarity=0.593  Sum_probs=34.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ++..+||+|||||++||++|++|++  .|++|+|+|+....
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~--~g~~v~v~E~~~~~   46 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQK--AGYKVTVLEARTRP   46 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCC
Confidence            3457799999999999999999999  89999999997543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.51  E-value=3.7e-05  Score=83.69  Aligned_cols=36  Identities=31%  Similarity=0.495  Sum_probs=33.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||++||++|+.|++  .|++|+|+|+..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~   38 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSP   38 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            346899999999999999999999  899999999975

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.50  E-value=3.4e-05  Score=83.84  Aligned_cols=35  Identities=31%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~--~G~~V~viE~~~   39 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGR--QGHRVVVVEQAR   39 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            45899999999999999999999  899999999974

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.48  E-value=4.5e-05  Score=86.17  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.6

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++.+||+|||||++||++|++|++  .|++|+|+|++.
T Consensus         2 ~~~~~vvIIGaG~aGL~aA~~L~~--~G~~V~vlE~~~   37 (520)
T 1s3e_A            2 SNKCDVVVVGGGISGMAAAKLLHD--SGLNVVVLEARD   37 (520)
T ss_dssp             -CBCSEEEECCBHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCceEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            346799999999999999999999  899999999965

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.48  E-value=5.5e-05  Score=85.94  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=33.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..++||+|||||++||++|+.|++  .|++|+||||...
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~--~G~~v~viEr~~~   39 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLAR--QGVRVLVVERRPG   39 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSSS
T ss_pred             CccCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCC
Confidence            356899999999999999999999  8999999999753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.48  E-value=5.2e-05  Score=83.88  Aligned_cols=37  Identities=35%  Similarity=0.525  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +++||+|||||++|+++|+.|++  .|++|+|||+....
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~~~   57 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRKPD   57 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCChH
Confidence            45799999999999999999999  99999999998643

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.47  E-value=4.7e-05  Score=86.18  Aligned_cols=37  Identities=14%  Similarity=0.105  Sum_probs=33.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +.++||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liE~~~~   41 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAM--RGHRVLLLEREAF   41 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHh--CCCCEEEEccCCC
Confidence            346899999999999999999999  8999999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.47  E-value=4.2e-05  Score=86.51  Aligned_cols=36  Identities=36%  Similarity=0.511  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      +..+||+|||||++||++|+.|++  .| ++|+|+|+..
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~--~G~~~V~VlEa~~   42 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQ--NGIQDCLVLEARD   42 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHH--TTCCSEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCC
Confidence            346799999999999999999999  89 9999999975

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.47  E-value=4.4e-05  Score=80.98  Aligned_cols=37  Identities=32%  Similarity=0.500  Sum_probs=32.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+||++|++|++...|++|+|||++.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            3579999999999999999998633699999999975

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.46  E-value=5.5e-05  Score=81.54  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||++||++|+.|++  .|++|+|+||..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            479999999999999999999  999999999975

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.45  E-value=4.1e-05  Score=89.67  Aligned_cols=45  Identities=11%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCC------CCcEEEeecccccccCCCCcc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFP------NCDVTVIADKFNMDTTSDGAA  295 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~------G~~VtVIEk~~~g~gAS~~ag  295 (728)
                      .++||+|||||++||++|++|++  .      |.+|+||||..+..++|...|
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~--~~~~~~pG~~V~vleK~~~~~s~s~AqG   71 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVR--WADKYAPEAKILLVDKASLERSGAVAQG   71 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HHHHHCTTCCEEEECSSCTTTCSTTTTC
T ss_pred             EEcCEEEECCCHHHHHHHHHHHh--hccccCCCCcEEEEEecCCCCCcccccC
Confidence            46899999999999999999999  5      999999999877655554333

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.45  E-value=5.1e-05  Score=79.58  Aligned_cols=38  Identities=26%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |...+||+|||||++|+++|++|++  .|++|+|||+..+
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~   50 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDKAVA   50 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSST
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence            4557899999999999999999999  8999999999643

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.45  E-value=4.6e-05  Score=84.14  Aligned_cols=36  Identities=36%  Similarity=0.482  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.++||+|||||++||++|++|++  .|++|+|+|+..
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~   38 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRK--AGLSVAVIEARD   38 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCC
Confidence            346899999999999999999999  899999999964

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.45  E-value=3.6e-05  Score=89.15  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=39.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC--CcEEEeecccccccCCC-CccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN--CDVTVIADKFNMDTTSD-GAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~~g~gAS~-~agGii~p  300 (728)
                      .++||+|||||++||++|++|++  .|  .+|+||||.....+.|. ..+|+...
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~--~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~   56 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQ--ANPNAKIALISKVYPMRSHTVAAEGGSAAV   56 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HCTTCCEEEEESSCGGGSGGGGCCSCEECC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh--cCCCCcEEEEeCCCCCCChHHHhcCccEEe
Confidence            35799999999999999999999  78  99999999865544443 44555433

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.45  E-value=5.2e-05  Score=82.61  Aligned_cols=36  Identities=39%  Similarity=0.494  Sum_probs=33.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++.+||+|||||++||++|+.|++  .|++|+|||+..
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            456899999999999999999999  899999999975

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.44  E-value=5.3e-05  Score=78.80  Aligned_cols=34  Identities=26%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +.+||+|||||++|+++|++|++  .|++|+|||+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSAR--YMLKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHH--CCCcEEEEecc
Confidence            46899999999999999999999  89999999997

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.44  E-value=5e-05  Score=80.08  Aligned_cols=37  Identities=19%  Similarity=0.219  Sum_probs=33.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+..+||+|||||.+|+++|++|++  .|++|+|||+..
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   38 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLP   38 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            4456899999999999999999999  899999999964

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.44  E-value=4.4e-05  Score=83.70  Aligned_cols=40  Identities=20%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCC-CCcEEEeeccc-ccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF-NMD  288 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~-~g~  288 (728)
                      |+.++||+|||||++||++|++|++  . |++|+|+|+.. +|.
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~--~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVAT--QLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHH--HSCCCEEEECSSSSSSG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHH--hCCCCEEEEeCCCCCCC
Confidence            3447899999999999999999999  6 99999999974 443

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.43  E-value=5.3e-05  Score=85.04  Aligned_cols=38  Identities=13%  Similarity=0.082  Sum_probs=34.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      .++||+|||||++|+++|++|++  .|++|+|||++.++.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~GG   62 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGA--LGKRVAIAEEYRIGG   62 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--CcCEEEEEeCCCCCC
Confidence            46899999999999999999999  899999999966543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.43  E-value=7.7e-05  Score=76.70  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=32.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||++|+++|++|++  .|++|+|||++.+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~   36 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGR--ARKNILLVDAGER   36 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCc
Confidence            4799999999999999999999  8999999999753

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.40  E-value=6.5e-05  Score=82.16  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=33.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc-cc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF-NM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~-~g  287 (728)
                      +.+||+|||||++||++|++|++  .| ++|+|+|+.. +|
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ--AGFHDYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEECCCCCC
Confidence            46799999999999999999999  89 8999999964 44

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.40  E-value=6.4e-05  Score=75.94  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=32.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +++||+|||||.+|+++|++|++  .|.+|+|||+..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            46899999999999999999999  899999999973

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.37  E-value=5.9e-05  Score=84.78  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +++++||+|||||.+|+++|+.|++  .|++|+|||+..
T Consensus        22 ~m~~~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~   58 (491)
T 3urh_A           22 SMMAYDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRS   58 (491)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             hcccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            4457999999999999999999999  899999999853

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.36  E-value=7.6e-05  Score=83.23  Aligned_cols=37  Identities=11%  Similarity=0.066  Sum_probs=33.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .++||+|||||.+|+++|++|++  .|++|+|||++.+|
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~--~G~~V~liEk~~~G   40 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAA--LGKKVAIAEEFRYG   40 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSCTT
T ss_pred             CCCcEEEECcCHHHHHHHHHHHh--CCCEEEEEeCCCCC
Confidence            46899999999999999999999  89999999996544

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.36  E-value=5e-05  Score=85.59  Aligned_cols=38  Identities=32%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhC-CCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~-~G~~VtVIEk~~~g  287 (728)
                      .+||+|||||++|+++|++|++.. +|++|+|||+...+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~   40 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVR   40 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC----
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCC
Confidence            469999999999999999999944 58999999997643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.35  E-value=5.2e-05  Score=85.26  Aligned_cols=48  Identities=19%  Similarity=0.108  Sum_probs=40.4

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAG  296 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agG  296 (728)
                      |+..+||+|||+|+.|+++|+.|++  .|++|+|+|++. .|..++..+.+
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~--~g~~v~~~e~~~~~Gg~~~s~~~~   65 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSH--YGKKILVLDRNPYYGGETASLNLT   65 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGCEECHH
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeccCCCCCCccccchh
Confidence            5678999999999999999999999  999999999975 55555555543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.35  E-value=6.2e-05  Score=78.68  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=33.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++.+||+|||||++|+++|++|++  .|++|+|||+..+
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~   39 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEK   39 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEccCCC
Confidence            456899999999999999999999  8999999997643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.34  E-value=9.6e-05  Score=80.73  Aligned_cols=35  Identities=37%  Similarity=0.619  Sum_probs=32.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +..+||+|||||++||++|++|++  .|++|+|+|+.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~--~G~~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEAN   76 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHH--TSCEEEEECSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHH--CCCcEEEEecc
Confidence            456799999999999999999999  89999999997

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.33  E-value=8.3e-05  Score=83.35  Aligned_cols=38  Identities=34%  Similarity=0.516  Sum_probs=32.7

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      |...+||+|||||++||++|++|++  .|++|+|+|+...
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~   47 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGK   47 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSS
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCC
Confidence            3456899999999999999999999  8999999999753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.33  E-value=7.6e-05  Score=79.37  Aligned_cols=35  Identities=29%  Similarity=0.251  Sum_probs=30.9

Q ss_pred             ceEEEeecceechhhHHHhhh-hCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQR-RFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~-~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++|+++|++|++ ..+|++|+||||..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            589999999999999999998 23589999999975

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.32  E-value=7.8e-05  Score=80.52  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..+||+|||||++|+++|+.|++  .|++|+|||+...
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~   45 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSE   45 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCC
Confidence            46899999999999999999999  8999999999753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.32  E-value=8.1e-05  Score=78.47  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=32.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||++|+++|++|++  .|++|+|||+..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~   36 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRR--SGLSYVILDAEA   36 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--SSCCEEEECCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCC
Confidence            35799999999999999999999  899999999975

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.32  E-value=0.0001  Score=79.50  Aligned_cols=39  Identities=28%  Similarity=0.447  Sum_probs=33.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ..+||+|||||++|+++|++|++..+|++|+|||+....
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            468999999999999999999993239999999998643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.32  E-value=9.5e-05  Score=77.73  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||.+|+++|++|++  .|++|+|||+..
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   41 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKGM   41 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCCC
Confidence            456899999999999999999999  899999999984

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.31  E-value=9e-05  Score=82.38  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=31.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||++||++|+.|++  .|++|+|+|+..
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~--~g~~v~v~E~~~   49 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSA   49 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence            456799999999999999999999  899999999975

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.27  E-value=0.0001  Score=83.34  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=34.2

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +++++||+|||||++||++|+.|++  .|++|+||||..
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~   44 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLV   44 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            4567899999999999999999999  999999999975

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.27  E-value=0.00014  Score=83.16  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=34.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhC-CCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~-~G~~VtVIEk~~~  286 (728)
                      +..+||+|||||++|+++|+.|++.. +|.+|+|||+...
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            45789999999999999999999965 6899999999754

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.24  E-value=0.00013  Score=80.23  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=33.7

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +...+||+|||||++||++|++|++  .|.+|+|+|+..
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~--~g~~v~v~E~~~   62 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLAS--SGQRVLIVDRRP   62 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHH--CCCceEEEeccC
Confidence            3457899999999999999999999  899999999964

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.24  E-value=0.00012  Score=78.33  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+..+||+|||||.+|+++|++|++  .|++|+|||+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   47 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMP   47 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            4457899999999999999999999  899999999964

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.21  E-value=0.00016  Score=81.80  Aligned_cols=36  Identities=36%  Similarity=0.397  Sum_probs=33.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++.+||+|||||++||++|+.|++  .|++|+||||..
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~   45 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLP   45 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCC
Confidence            457899999999999999999999  899999999975

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.21  E-value=9.7e-05  Score=77.74  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      +..+||+|||||++|+++|++|++  .|++|+|||+
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~   39 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEec
Confidence            456899999999999999999999  8999999998

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.20  E-value=0.00015  Score=79.10  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=31.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++||+|||||++|+++|+.|++  .|++|+|+|++.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~   36 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRD   36 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence            4799999999999999999999  899999999965

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.19  E-value=0.00014  Score=77.53  Aligned_cols=35  Identities=37%  Similarity=0.599  Sum_probs=32.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      .++||+|||||.+|+++|++|++  .|+ +|+|||++.
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~--~g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKD--FGITDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH--cCCCcEEEEecCC
Confidence            35799999999999999999999  899 999999975

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.19  E-value=0.00014  Score=76.94  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++..+||+|||||.+|+++|++|++  .|++|+|||+..
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   47 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGTS   47 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCSS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            4557899999999999999999999  899999999763

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.19  E-value=0.00013  Score=83.83  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ..+||+|||+|++|+++|+.|++  .|++|+|||+.....+.|..++|.+..
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~--~g~~v~~~e~~~~~~~~~~~a~gg~~~  174 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTKLAAGGMNA  174 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHS--SSCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcchhhhCCeeEc
Confidence            46799999999999999999999  899999999987666777777665543

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.19  E-value=0.00016  Score=77.51  Aligned_cols=39  Identities=31%  Similarity=0.451  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ..+||+|||||++|+++|++|++..+|++|+|+|+....
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            356999999999999999999993239999999997644

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.18  E-value=0.00015  Score=84.50  Aligned_cols=49  Identities=22%  Similarity=0.295  Sum_probs=38.2

Q ss_pred             CcceEEEeecceechhhHHHhh---hhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQ---RRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La---~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      .++||+|||||++||++|++|+   ++ .|.+|+||||...+. ++..++|.+.
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~-~G~~V~vlEK~~~~~-s~~~a~G~~~   72 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKL-GGLKVTLVEKAAVER-SGAVAQGLSA   72 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTT-TTCCEEEECSSCTTT-CSTTTTCEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhh-CCCeEEEEeCcCCCC-Ccceeccccc
Confidence            4689999999999999999999   31 689999999987643 3334555543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.18  E-value=0.00014  Score=78.76  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++|+++|++|++  .|++|+|+|+..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~   34 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRN   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            699999999999999999999  899999999964

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.17  E-value=0.00017  Score=80.44  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +.++||+|||||.+|+++|++|++  .|++|+|||++.+|
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~G   39 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERGTIG   39 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSTT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCC
Confidence            456899999999999999999999  89999999998544

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.15  E-value=0.0002  Score=79.38  Aligned_cols=37  Identities=16%  Similarity=0.140  Sum_probs=34.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+..+||+|||||+.|+++|+.|++  .|++|+|+|+..
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~--~g~~v~~~e~~~   39 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSV--NGKKVLHMDRNP   39 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            4567899999999999999999999  899999999975

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.15  E-value=0.00014  Score=75.39  Aligned_cols=36  Identities=31%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEE-eecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTV-IADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtV-IEk~~~  286 (728)
                      ..+||+|||||.+|+++|++|++  .|++|+| +|+..+
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~li~e~~~~   39 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATR--GGLKNVVMFEKGMP   39 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH--HTCSCEEEECSSST
T ss_pred             CCceEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCCCC
Confidence            35799999999999999999999  8999999 999543

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.13  E-value=0.0002  Score=80.13  Aligned_cols=33  Identities=18%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++||++|++|++  .|++|+|+|+..
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~--~g~~v~v~E~~~   72 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTV--AGFKTLLLEARD   72 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            799999999999999999999  899999999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.13  E-value=0.0002  Score=68.84  Aligned_cols=33  Identities=36%  Similarity=0.450  Sum_probs=31.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||.+|+.+|+.|++  .|.+|+|+|+..
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            699999999999999999999  899999999974

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.13  E-value=0.00014  Score=83.75  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCC------CCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFP------NCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~------G~~VtVIEk~~  285 (728)
                      +++||+|||||++||++|+.|++  .      |++|+||||..
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~--~~~~~~~G~~V~vlEk~~   74 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQ--LAAQHEKDLRVCLVEKAA   74 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HHHHTTCCCCEEEECSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHh--cccccCCCCcEEEEeCCC
Confidence            45899999999999999999999  6      99999999975

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.13  E-value=0.0002  Score=80.55  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc-ccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF-NMD  288 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~-~g~  288 (728)
                      ++.+||+|||||++||++|++|++  .| .+|+|+|+.. +|.
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~--~g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTE--LGYKNWHLYECNDTPGG   47 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHH--TTCCSEEEEESSSSSSG
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHH--cCCCCEEEEeCCCCCCC
Confidence            346899999999999999999999  77 7999999974 443

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.12  E-value=0.00016  Score=75.68  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+||+|||||++|+++|++|++  .|++|+|||+..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   40 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGM--RQASVKIIESLP   40 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence            5799999999999999999999  899999999975

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.12  E-value=0.0002  Score=74.61  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      +||+|||||.+|+++|++|++  .|+ +|+|||++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~--~g~~~v~lie~~~   35 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATR--GGVKNAVLFEKGM   35 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCSSEEEECSSS
T ss_pred             ceEEEECccHHHHHHHHHHHH--CCCCcEEEEcCCC
Confidence            699999999999999999999  899 999999964

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.09  E-value=0.00022  Score=81.47  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||++||++|+.|++  .|.+|+||||..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~--~G~~V~vlEr~~   59 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAH--RQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            35799999999999999999999  899999999975

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.08  E-value=0.00021  Score=80.05  Aligned_cols=35  Identities=37%  Similarity=0.504  Sum_probs=32.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||++||++|+.|++  .|++|+|+|+..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~--~g~~v~vlE~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCC
Confidence            46799999999999999999999  899999999964

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.08  E-value=0.00023  Score=81.43  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=33.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ...+||+|||||++|+++|++|++  .|++|+|||++..
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~--~G~kV~VlEr~~~  141 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQ--MGFNPIIVERGKE  141 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEEccCc
Confidence            346899999999999999999999  9999999999753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.08  E-value=0.00025  Score=78.65  Aligned_cols=36  Identities=36%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      ++.+||+|||||++|+++|++|++  .|.  +|+|||+..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~--~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLA--EKAFDQVTLFERRG   41 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHT--TTCCSEEEEECSSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHh--cCCCCCeEEEecCC
Confidence            456899999999999999999999  888  999999974

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.08  E-value=0.00023  Score=79.46  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=33.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +.++||+|||||.+|+++|++|++  .|++|+|||++..
T Consensus         2 ~~~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~   38 (463)
T 2r9z_A            2 TQHFDLIAIGGGSGGLAVAEKAAA--FGKRVALIESKAL   38 (463)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCT
T ss_pred             CccCcEEEECCCHHHHHHHHHHHh--CCCcEEEEcCCCC
Confidence            346899999999999999999999  8999999999854

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.07  E-value=0.00021  Score=79.37  Aligned_cols=37  Identities=14%  Similarity=0.086  Sum_probs=33.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +.++||+|||||.+|+++|++|++  .|++|+|||++..
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~   38 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAM--YGQKCALIEAKEL   38 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSCT
T ss_pred             CccCCEEEECCCHHHHHHHHHHHh--CCCeEEEEcCCCC
Confidence            346899999999999999999999  8999999999854

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.07  E-value=0.00027  Score=80.15  Aligned_cols=37  Identities=11%  Similarity=0.033  Sum_probs=34.2

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++.++||+|||||.+|+++|++|++  .|++|+|||++.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~   76 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWP   76 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            4557899999999999999999999  899999999986

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.06  E-value=0.00023  Score=80.79  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhC----------CCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRF----------PNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~----------~G~~VtVIEk~~~  286 (728)
                      ..+||+|||||++|+++|+.|++..          +|++|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            4689999999999999999999932          6899999999653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.05  E-value=0.0002  Score=80.07  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=34.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ++..+||+|||||.+|+++|++|++  .|++|+|||++..+
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~~~G   55 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAE--LGARAAVVESHKLG   55 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC
Confidence            3457899999999999999999999  89999999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.04  E-value=0.00024  Score=79.31  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||.+|+++|++|++  .|++|+|||++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh--CCCEEEEEeCCC
Confidence            46899999999999999999999  899999999985

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.04  E-value=0.00018  Score=77.84  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=31.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .||+|||||++||++|+.|++..+|++|+|||+...
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            389999999999999999999323999999999753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.02  E-value=0.0002  Score=79.95  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++++||+|||||.+|+++|+.|++  .|++|+|||+..
T Consensus         2 ~~~~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~   37 (466)
T 3l8k_A            2 SLKYDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKG   37 (466)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTS
T ss_pred             CccceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCC
Confidence            346899999999999999999999  899999999643

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=97.00  E-value=0.00095  Score=71.51  Aligned_cols=68  Identities=18%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      .+++++++.++..+-.|+|...+.|+|.+++.++|++.. .-.+.+|||.+...|++++++|+..+.+.
T Consensus       248 ~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~~-~~~~~iDGE~~~~~~i~i~v~p~~l~v~~  315 (337)
T 2qv7_A          248 KSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFT-DLQLNVDGEYGGKLPANFLNLERHIDVFA  315 (337)
T ss_dssp             CCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSS-CCEEEETTEEEEESCEEEEEEEEEEEEEC
T ss_pred             cCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEECC-CCeEEECCCcCCCCcEEEEEEcCeEEEEe
Confidence            368899999999999999999999999999999999753 57899999999999999999999985544

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.00027  Score=79.16  Aligned_cols=38  Identities=13%  Similarity=0.138  Sum_probs=33.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +.++||+|||||.+|+++|+.|++  .|++|+|||++..+
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~~~G   46 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAKALG   46 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESSCTT
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCCCcC
Confidence            346899999999999999999999  89999999998543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.99  E-value=0.00029  Score=81.85  Aligned_cols=40  Identities=28%  Similarity=0.248  Sum_probs=34.2

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD  288 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~  288 (728)
                      |...+||+|||||++|+++|++|++  +|++|+|||+.....
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~--~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEIDS   82 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCCS
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHh--CCCcEEEEeccCCCC
Confidence            3457899999999999999999999  999999999986544

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.99  E-value=0.00027  Score=79.65  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .++||+|||||..|+++|+.|++  .|++|+|||++..+
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~--~G~~V~liE~~~~G   43 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKK--HTDKVVLIEGGAYG   43 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--TCSCEEEEESSCSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence            35899999999999999999999  89999999997644

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.95  E-value=0.00044  Score=80.11  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|++|++  .|.+|+|||+..
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecc
Confidence            46899999999999999999999  899999999973

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=96.91  E-value=0.00038  Score=78.63  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=33.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||++|+++|+.|++  .|.+|+|||+..
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liEk~~  125 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELAL--LGARVVLVEKRI  125 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHH--CCCeEEEEEecc
Confidence            346899999999999999999999  899999999975

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.90  E-value=0.00035  Score=78.28  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=33.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      |+.++||+|||||.+|+++|+.|++  .|++|+|||+.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~   38 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERY   38 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            4557899999999999999999999  89999999994

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.89  E-value=0.0005  Score=79.88  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||.+|+++|++|++  .|.+|+|||+..
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHh--CCCCEEEEeecc
Confidence            57899999999999999999999  899999999973

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.89  E-value=0.00027  Score=79.52  Aligned_cols=37  Identities=32%  Similarity=0.384  Sum_probs=32.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCC-CCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~~  286 (728)
                      ++||+|||||++|+++|++|++..+ |++|+|||++..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~   39 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   39 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCc
Confidence            4799999999999999999999322 999999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.89  E-value=0.0003  Score=78.57  Aligned_cols=36  Identities=19%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      |+.++||+|||||.+|+++|+.|++  .|++|+|||+.
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~   37 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKR   37 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecC
Confidence            3456899999999999999999999  89999999994

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=96.89  E-value=0.00046  Score=80.13  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....+||+|||||.+|+++|++|++  .|.+|+|||+..
T Consensus        18 ~~~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~   54 (641)
T 3cp8_A           18 GSHMYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDL   54 (641)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecc
Confidence            3457899999999999999999999  899999999974

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.88  E-value=0.00037  Score=77.63  Aligned_cols=35  Identities=23%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||.+|+++|+.|++  .|++|+|||++..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~   37 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPKYW   37 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            5899999999999999999999  8999999999843

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.87  E-value=0.00041  Score=77.37  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||++|+++|++|++..+|++|+|||++..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~   39 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR   39 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence            4699999999999999999999444999999999753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.84  E-value=0.00041  Score=82.60  Aligned_cols=36  Identities=39%  Similarity=0.446  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||++|+++|++|++  .|++|+|+|+..
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~--~g~~v~v~E~~~  369 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHN--FGIKVTVLEAKD  369 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEeccc
Confidence            346899999999999999999999  899999999964

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.81  E-value=0.00079  Score=78.38  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||++||++|+.|++. .|++|+||||..
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~-~G~~V~viEr~~   66 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAF-PDIRTCIVEQKE   66 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTC-TTSCEEEECSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence            3568999999999999999999982 489999999975

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.80  E-value=0.00051  Score=76.58  Aligned_cols=34  Identities=12%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++||+|||||.+|+++|++|++  .|++|+|||++.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~   35 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRG   35 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            5799999999999999999999  899999999983

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.79  E-value=0.00053  Score=78.12  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+..+||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~   49 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAG   49 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            3457899999999999999999999  899999999975

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.79  E-value=0.00051  Score=71.37  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ++||+|||||.+|+++|++|++  .|++|+|||+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~~   33 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGER   33 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCC
Confidence            3799999999999999999999  89999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.78  E-value=0.00064  Score=76.14  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +..+||+|||||.+|+++|++|++  .|++|+|||+.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~--~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVL--NGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCEEEEEEec
Confidence            357899999999999999999999  89999999964

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.77  E-value=0.00059  Score=78.67  Aligned_cols=37  Identities=38%  Similarity=0.541  Sum_probs=33.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...||+||||||.+||.+|..|++. ++++|+|||++.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence            4579999999999999999999974 689999999975

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.75  E-value=0.00058  Score=77.00  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||.+|+++|+.|++  .|++|+|||++..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~   36 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAAR--HNAKVALVEKSRL   36 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSST
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCc
Confidence            5799999999999999999999  8999999999853

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.75  E-value=0.00051  Score=78.42  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhh-hhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La-~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||++|+++|+.|+ +  .|++|+|||+..
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~--~G~~v~viE~~~   42 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHE--LGLTTVGFDKAD   42 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEECCC
Confidence            4689999999999999999999 7  899999999964

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.74  E-value=0.00083  Score=76.15  Aligned_cols=37  Identities=24%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++..+||+|||||..|+++|+.|++  .|++|+|||+..
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~   65 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVT   65 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccC
Confidence            3457899999999999999999999  899999999964

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.74  E-value=0.00061  Score=75.48  Aligned_cols=36  Identities=36%  Similarity=0.506  Sum_probs=32.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+||+|||||.+|+++|++|++..++++|+|||++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~   38 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE   38 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            479999999999999999999954589999999975

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.72  E-value=0.0006  Score=75.71  Aligned_cols=35  Identities=26%  Similarity=0.662  Sum_probs=32.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||.+|+++|++|++..+|++|+|||++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~   37 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQA   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            59999999999999999999944499999999986

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.71  E-value=0.00071  Score=75.35  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=31.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ..+||+|||||++|+++|++|++  .|+ +|+|+|+..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~--~g~~~v~~~e~~~   38 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSE--AGITDLLILEATD   38 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--cCCCceEEEeCCC
Confidence            45799999999999999999999  898 899999964

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.71  E-value=0.00069  Score=79.57  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=33.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||.+|+++|++|++  +|++|+|||+..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~--~G~~V~liE~~~  424 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGV--RGYDVVLAEAGR  424 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            456899999999999999999999  899999999964

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.69  E-value=0.00069  Score=74.22  Aligned_cols=36  Identities=31%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCc--EEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCD--VTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~--VtVIEk~~  285 (728)
                      ++++||+|||||++|+++|++|++  .|++  |+|||++.
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~--~g~~~~V~lie~~~   44 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQ--NGFEGRVLVIGREP   44 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH--TTCCSCEEEEESSS
T ss_pred             CCCCcEEEECChHHHHHHHHHHHc--cCcCCCEEEEecCC
Confidence            356899999999999999999999  7776  99999975

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.68  E-value=0.00064  Score=75.90  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||.+|+++|+.|++  .|++|+|||++.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~   39 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQ--LGFKTVCIEKNE   39 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCC
Confidence            46899999999999999999999  899999999974

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.65  E-value=0.00066  Score=76.56  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+||||+|.+|+.+|..|++. ++++|+|||++.
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~   51 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGE   51 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSB
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCC
Confidence            3479999999999999999999984 689999999974

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.64  E-value=0.00078  Score=77.00  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~--~g~~v~iiE~~~   42 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQ--AGMKVLGIEAGE   42 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            346899999999999999999999  899999999974

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.63  E-value=0.00074  Score=74.93  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||.+|+++|++|++  .|++|+|||++..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~   37 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGNL   37 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCC
Confidence            5799999999999999999999  8999999999843

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A

Probab=96.62  E-value=0.0019  Score=68.23  Aligned_cols=70  Identities=11%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             chhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccccccc
Q psy16975          7 FGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEY   78 (728)
Q Consensus         7 ~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~~~~   78 (728)
                      .+++.+..+|..+-.|. ...++|+|.+++.++|++.. .-.+.+|||.+...|++++|+|+..+.++.+++
T Consensus       232 ~~~~~l~~l~~~~~~g~-~~~~~v~~~~~~~v~i~~~~-~~~~~~DGE~~~~~p~~i~v~p~al~v~~p~~~  301 (304)
T 3s40_A          232 TGIQAFKDYIGKKLFED-SNENDIFHVKAKSIHIETEE-EKEVDTDGESSLHTPCQIELLQGHFTMIYNPAV  301 (304)
T ss_dssp             TCHHHHHHHTTCCCSSC-CCTTTEEEEEESEEEEEESS-CCEEEEC--CCEESSEEEEEEEEEEEEECCTTT
T ss_pred             CCHHHHHHHHHHHhcCC-CCCCcEEEEEccEEEEEeCC-CcEEEeCCCCCCCceEEEEEECCeEEEEechhh
Confidence            45666666666666665 78899999999999999876 468999999999999999999999967665554

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.61  E-value=0.00093  Score=74.95  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||..|+++|+.|++  .|++|+|||+..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk~~   39 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQ--LGKKVAVADYVE   39 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEEecc
Confidence            46899999999999999999999  899999999843

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.61  E-value=0.00094  Score=74.62  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|++|++  .|++|+|||+..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~--~G~~V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRA--KGYEVHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccC
Confidence            46799999999999999999999  899999999974

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.61  E-value=0.00075  Score=77.21  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=32.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~   54 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAAS   54 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            456899999999999999999999  899999999964

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.59  E-value=0.00085  Score=74.66  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++||+|||||.+|+++|+.|++  .|++|+|||++.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~--~g~~V~liE~~~   39 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRG   39 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            46899999999999999999999  799999999973

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.59  E-value=0.00087  Score=74.76  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ++||+|||||.+|+++|+.|++  .|++|+|||++..
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~--~g~~V~lie~~~~   40 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ--LGLKVLAVEAGEV   40 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence            6899999999999999999999  8999999999863

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.59  E-value=0.0011  Score=76.27  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .+||+||||||.+||.+|..|++. +.++|+|||++..
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence            469999999999999999999993 3489999999753

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.58  E-value=0.0013  Score=75.48  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+||||||.+|+.+|..|++. ++++|+|||++.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~   36 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGV   36 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCC
Confidence            58999999999999999999984 789999999974

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.55  E-value=0.00096  Score=73.70  Aligned_cols=36  Identities=25%  Similarity=0.566  Sum_probs=32.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      ++.+||+|||||.+|+++|+.|++  .|+  +|+|||++.
T Consensus         2 ~~~~~vvIIGgG~aGl~aA~~l~~--~g~~~~V~lie~~~   39 (431)
T 1q1r_A            2 NANDNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLVGDAT   39 (431)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSCC
T ss_pred             CCCCcEEEEcCHHHHHHHHHHHHc--cCcCCCEEEEECCC
Confidence            346899999999999999999999  777  799999864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.55  E-value=0.00092  Score=72.42  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~  285 (728)
                      +.++||+|||||++|+++|+.|++  .|  .+|+|+|++.
T Consensus         2 ~~~~dvvIIG~G~aGl~aA~~l~~--~g~~~~V~lie~~~   39 (384)
T 2v3a_A            2 SERAPLVIIGTGLAGYNLAREWRK--LDGETPLLMITADD   39 (384)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHT--TCSSSCEEEECSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHh--hCCCCCEEEEECCC
Confidence            346899999999999999999999  66  5799999874

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.51  E-value=0.0011  Score=76.22  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +.+||+|||||++|+++|++|++..+|++|+|||++..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   72 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY   72 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            45799999999999999999999444899999999753

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.51  E-value=0.00099  Score=75.86  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=33.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ...+|++|||+|.+|+++|++|++  .|++|+|||++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~--~g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            357899999999999999999999  8999999999853

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.49  E-value=0.0011  Score=73.59  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=31.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++||+|||||.+|+++|++|++  .|++|+|||++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~   34 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQ--LGMKVGVVEKEK   34 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCCEEEECCChhHHHHHHHHHH--CCCeEEEEeCCC
Confidence            3799999999999999999999  899999999973

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.47  E-value=0.0011  Score=72.55  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||.+|+.+|++|++  .|++|+|+|+..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~--~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR--LGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHH--CCCcEEEEeccC
Confidence            589999999999999999999  999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.44  E-value=0.00075  Score=74.74  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC-----CcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN-----CDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G-----~~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|++|++  .|     .+|+|||+..
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~--~g~~~~~~~v~liE~~~   68 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQE--RAQAQGALEVLFLDKQG   68 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHH--HHHHHCCCCEEEEESCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--cccccCcccEEEEecCC
Confidence            35799999999999999999999  77     8999999976

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.43  E-value=0.0009  Score=75.36  Aligned_cols=36  Identities=36%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +...+||+|||||++|+++|++|++  . ++|+|||++.
T Consensus       105 ~~~~~dVvIIGgG~aGl~aA~~L~~--~-~~V~vie~~~  140 (493)
T 1y56_A          105 ERVVVDVAIIGGGPAGIGAALELQQ--Y-LTVALIEERG  140 (493)
T ss_dssp             EEEEESCCEECCSHHHHHHHHHHTT--T-CCEEEECTTS
T ss_pred             ccccCCEEEECccHHHHHHHHHHHh--c-CCEEEEeCCC
Confidence            3456899999999999999999999  7 9999999975

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.43  E-value=0.00092  Score=74.41  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .++||+|||||.+|+++|+.|++  .|++|+|||++..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~~   39 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQAL   39 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEccCCC
Confidence            35799999999999999999999  7999999999654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.42  E-value=0.0015  Score=76.30  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||++|+++|++|++  .|++|+|+|+..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~--~g~~v~~~e~~~  140 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARD  140 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            346799999999999999999999  999999999964

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.39  E-value=0.0013  Score=71.76  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      .||+|||||++|+++|++|++  .|+  +|+|||++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~--~g~~~~V~lie~~~   36 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQ--AKYPGRIALINDEK   36 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCSCEEEECCSS
T ss_pred             CCEEEEcChHHHHHHHHHHHh--hCcCCCEEEEeCCC
Confidence            489999999999999999999  787  899999975

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.38  E-value=0.0013  Score=72.57  Aligned_cols=36  Identities=33%  Similarity=0.440  Sum_probs=31.7

Q ss_pred             cceEEEeecceechhhHHHhhh-hCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQR-RFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~-~~~G~~VtVIEk~~  285 (728)
                      ..||+|||||.+|+++|++|++ ..+|++|+|||+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            4699999999999999999998 23589999999975

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.37  E-value=0.0012  Score=72.00  Aligned_cols=35  Identities=34%  Similarity=0.393  Sum_probs=31.4

Q ss_pred             ceEEEeecceechhhHHHhhh-hCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQR-RFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~-~~~G~~VtVIEk~~  285 (728)
                      .||+|||||++|+++|++|++ ..+|++|+|||++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            489999999999999999998 44689999999975

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.37  E-value=0.0014  Score=73.77  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEee
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA  282 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIE  282 (728)
                      .++||+|||||.+|+++|++|++. .|++|+|||
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASL-HKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHH-cCCEEEEEe
Confidence            358999999999999999999983 489999999

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.33  E-value=0.0015  Score=73.44  Aligned_cols=39  Identities=18%  Similarity=0.350  Sum_probs=34.1

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++..+||+|||||.+|+++|+.|.+...+.+|+|||++.
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~   46 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   46 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            456789999999999999999998844589999999974

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.31  E-value=0.0015  Score=73.60  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      |..++||+|||||.+|+++|++|++. .|++|+|||+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE~   39 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATL-YGKRVAVVDV   39 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEES
T ss_pred             cccccCEEEECCChhHHHHHHHHHHh-cCCeEEEEec
Confidence            44578999999999999999999983 3899999993

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.28  E-value=0.0018  Score=75.80  Aligned_cols=37  Identities=35%  Similarity=0.425  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhh---CCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRR---FPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~---~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||++||++|+.|++.   ..|++|+||||..
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            468999999999999999999982   1489999999974

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.27  E-value=0.0018  Score=70.97  Aligned_cols=33  Identities=33%  Similarity=0.581  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCc--EEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCD--VTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~--VtVIEk~~  285 (728)
                      .+|+|||||++|+++|++|++  .|++  |+|||++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~--~g~~~~V~li~~~~   37 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRA--EGFEGRISLIGDEP   37 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEEECSS
T ss_pred             CCEEEEcccHHHHHHHHHHHc--cCcCCeEEEEECCC
Confidence            489999999999999999999  7776  99999975

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.27  E-value=0.0019  Score=77.60  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=32.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....+|+|||||++||++|++|++  .|++|+|+|+..
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~--~g~~v~v~E~~~  311 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARD  311 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence            346799999999999999999999  999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.20  E-value=0.0023  Score=75.58  Aligned_cols=36  Identities=25%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||.+|+++|+.|++  .|++|+|||+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~  422 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAE  422 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             cCCceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            346799999999999999999999  899999999964

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.20  E-value=0.0022  Score=73.75  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=31.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+||+|||||.+|+++|++|++  .|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHh--CCCeEEEEecc
Confidence            46899999999999999999999  89999999984

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.20  E-value=0.0021  Score=72.83  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +..+||+|||||.+|+++|++|++  .|++|+|+|+.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~~  244 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGER  244 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHh--CCCeEEEEECC
Confidence            346899999999999999999999  89999999874

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.10  E-value=0.0019  Score=71.57  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||.+|+++|+.|++..+|.+|+|||++.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~   35 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMND   35 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            48999999999999999999943499999999975

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.10  E-value=0.0023  Score=72.81  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .||+|||||.+|+++|++|++..++++|+|||++.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~   36 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGE   36 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            48999999999999999999954489999999975

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.03  E-value=0.0028  Score=70.11  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||.+|+++|+.|++..+|.+|+|||++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   35 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCC
Confidence            38999999999999999999943499999999975

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.01  E-value=0.0028  Score=69.91  Aligned_cols=35  Identities=31%  Similarity=0.660  Sum_probs=31.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|||||||.+|+++|++|++..++++|||||++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            47999999999999999999855668999999974

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.98  E-value=0.0028  Score=70.87  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .+||+|||||.+|+++|+.|++..+|.+|+|||++..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            3599999999999999999998434899999999753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.97  E-value=0.0024  Score=69.86  Aligned_cols=35  Identities=31%  Similarity=0.473  Sum_probs=31.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      +.+||+|||||.+|+++|++|++  .|+  +|+|||++.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~~~V~lie~~~   42 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQ--AGYQGLITVVGDEA   42 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHH--HTCCSCEEEEESSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHc--cCCCCeEEEEECCC
Confidence            46799999999999999999999  666  599999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.97  E-value=0.0029  Score=70.67  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhC-CCCc---EEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRF-PNCD---VTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~-~G~~---VtVIEk~~  285 (728)
                      +||+|||||.+|+++|.+|++.. .|++   |+|||+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~   41 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQA   41 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC
Confidence            69999999999999999999722 4788   99999974

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.96  E-value=0.0021  Score=72.16  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCC---CcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPN---CDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G---~~VtVIEk~~  285 (728)
                      ++||+|||||.+|+++|..|++  .|   .+|+|||++.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~--~g~~~~~V~lie~~~   71 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLT--NYGDANEIVVFDQNS   71 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HHGGGSEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--cCCCCCeEEEEECCC
Confidence            5899999999999999999999  55   9999999975

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.94  E-value=0.0037  Score=73.03  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||.+|+++|+.|++  .|++|+|||++.
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~  406 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHS  406 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCC
Confidence            346799999999999999999999  899999999974

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=95.90  E-value=0.002  Score=75.79  Aligned_cols=34  Identities=32%  Similarity=0.475  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCC--------CcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPN--------CDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G--------~~VtVIEk~~  285 (728)
                      ..+|+|||||++||++|++|++  .|        ++|+|+|+..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~--~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGR--LAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--HHTTSCTTCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCcccccCCCceEEEEeccC
Confidence            4689999999999999999999  67        9999999874

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.87  E-value=0.0037  Score=70.64  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +...+|++|||+|.+|+++|+.|++  +|.+|+|||++.
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~   44 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGR   44 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCC
Confidence            3457999999999999999999999  899999999974

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.87  E-value=0.0028  Score=72.15  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=32.7

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..++|+||||||.+|+.+|..|++   |.+|+|||++..
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~   59 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBC
T ss_pred             cCcccEEEECccHHHHHHHHHHhc---CCcEEEEecCCC
Confidence            457999999999999999999998   689999999853

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.87  E-value=0.0033  Score=70.94  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=32.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|++|||+|.+|+++|+.|++  .|.+|+|||++.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~   38 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ   38 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            46899999999999999999999  899999999975

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.85  E-value=0.0033  Score=71.78  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      +.+|++|||+|.+|+++|++|++. +|.+|+|||++..
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~   48 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPD   48 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCc
Confidence            578999999999999999999992 3899999999753

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.72  E-value=0.0043  Score=75.66  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=33.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+||+|||||.+|+++|++|++  .|++|+|||++.
T Consensus       126 ~~~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~  161 (965)
T 2gag_A          126 HVHTDVLVVGAGPAGLAAAREASR--SGARVMLLDERA  161 (965)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            346899999999999999999999  899999999974

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.65  E-value=0.0043  Score=67.02  Aligned_cols=33  Identities=36%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .||+|||||.+|+++|..|++  .| +|+|||++..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~   41 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPV   41 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCC
Confidence            589999999999999999999  78 9999999763

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.57  E-value=0.0041  Score=69.35  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             cceEEEeecceechhhHHHhhh-hCC----CCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQR-RFP----NCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~-~~~----G~~VtVIEk~~  285 (728)
                      .+||+|||||.+|+++|..|++ ..+    |++|+|||+..
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~   43 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   43 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCC
Confidence            5799999999999999999988 533    89999999974

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.56  E-value=0.0055  Score=66.37  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|||||||.+|+++|.+|++..++.+|+|||++.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            6999999999999999999854567999999875

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A

Probab=95.51  E-value=0.0078  Score=64.28  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=53.6

Q ss_pred             hHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975          9 VWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV   74 (728)
Q Consensus         9 r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~   74 (728)
                      ++ ++.++..+-+| |.. +.|.+.+++.++|++.. ...+.+|||.+...|++++|+|+..+.++
T Consensus       255 ~~-~l~~~~~~~~g-~~~-~~v~~~~~~~i~I~~~~-~~~~~iDGE~~~~~~~~i~v~p~al~vl~  316 (332)
T 2bon_A          255 EI-LPALVSTLKSD-EDN-PNIIEGASSWFDIQAPH-DITFNLDGEPLSGQNFHIEILPAALRCRL  316 (332)
T ss_dssp             SC-CHHHHHHHHTT-CCC-TTEEEEEESEEEEEEEE-EEEEEETTEEEEEEEEEEEEEEEEEEEEE
T ss_pred             HH-HHHHHHHHHcC-CCC-CcEEEEEeeEEEEEECC-CCeEEecCCCCCCceEEEEEECCeeEEEe
Confidence            55 78888888889 887 99999999999999743 46899999999999999999999985554

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.47  E-value=0.0077  Score=68.76  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=32.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      .||++|||||-.|.++|..+++  .|.+|+|||+..+
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~--~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAA--HGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT--TTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence            4899999999999999999999  8999999997653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.42  E-value=0.0064  Score=70.04  Aligned_cols=37  Identities=35%  Similarity=0.588  Sum_probs=33.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+|++|||+|.+|+++|+.|++. +|.+|+|||++.
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~   58 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGF   58 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence            3579999999999999999999984 689999999974

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.29  E-value=0.0076  Score=73.97  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=32.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|++|++  .|+ +|+|+|+..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~--~G~~~Vtv~E~~~  221 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLAR--LGYSDITIFEKQE  221 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh--cCCCcEEEEeCCC
Confidence            36799999999999999999999  899 799999964

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.29  E-value=0.0073  Score=65.76  Aligned_cols=35  Identities=34%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++.+|+|||||.+|+++|..|+.  ++.+|+|||++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~   42 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALG--KCDDITMINSEK   42 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSS
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCC
Confidence            34579999999999999999966  899999999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.18  E-value=0.0076  Score=67.26  Aligned_cols=37  Identities=19%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+|+++|..|++..++++|+|||+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~   41 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   41 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence            3569999999999999999999932239999999975

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.09  E-value=0.0089  Score=67.48  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+.+|||||||.+|+++|..|.+  .+++|||||++.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCC
Confidence            35689999999999999999998  899999999963

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.71  E-value=0.015  Score=64.38  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||.+|+++|..|++.....+|+|||++.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~   35 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR   35 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            5999999999999999999843447899999974

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=94.48  E-value=0.018  Score=66.82  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=34.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+++|||+|||+|+.|+..|..|++  .|.+|.+|||..
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~--~g~~vl~id~~~   41 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRS   41 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence            4568999999999999999999999  899999999975

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.65  E-value=0.036  Score=50.10  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|+|||+|-+|...|..|++  .|++|+++|+..
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            479999999999999999999  899999999853

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.30  E-value=0.038  Score=58.80  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||||.+|..+|..++.  .|++|+++|...
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            3479999999999999999999  999999999764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.29  E-value=0.045  Score=47.85  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      ..|+|+|+|.+|..+|..|.+  .| ++|+++++..
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKT--SSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCH
Confidence            479999999999999999999  88 9999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.28  E-value=0.043  Score=56.97  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|.|||+|.+|.++|..|++  .|++|+++|+..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            4579999999999999999999  899999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.19  E-value=0.046  Score=50.03  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|+|+|-+|.++|..|.+  .|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence            479999999999999999999  899999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.05  E-value=0.061  Score=49.52  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+|+|||+|-+|..+|..|.+  .|++|+++|++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence            4579999999999999999999  899999999974

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.03  E-value=0.048  Score=56.98  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|.++|..|++  .|++|+++|+..
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            469999999999999999999  899999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.91  E-value=0.061  Score=50.33  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||+|-+|..+|..|.+  .|++|+++|+..
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            4579999999999999999999  899999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.59  E-value=0.068  Score=49.81  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=30.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+|+|+|+|-+|...|..|.+  .|++|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence            4579999999999999999999  89999999996

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.49  E-value=0.059  Score=58.10  Aligned_cols=36  Identities=36%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..++|.|||+|.+|.+.|..|++  .|++|++++++.
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~--~G~~V~l~~r~~   62 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLAR--KGQKVRLWSYES   62 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHT--TTCCEEEECSCH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            345689999999999999999999  899999999863

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=92.36  E-value=0.033  Score=62.67  Aligned_cols=50  Identities=16%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhhC------------CCCcEEEeecccccccCCCCccccccCC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRF------------PNCDVTVIADKFNMDTTSDGAAGLFEPS  301 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~------------~G~~VtVIEk~~~g~gAS~~agGii~p~  301 (728)
                      ..-+||||||||..||++|.+|.+..            .+..+..+|+..-    -+|+.|++.+.
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~----f~Wh~g~~~p~   98 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQ----FAWHSGMLVPG   98 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSS----CCSSGGGCCTT
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCC----CCcCCCCCCCC
Confidence            34589999999999999999998720            1234566666431    12566666553

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.08  E-value=0.066  Score=56.49  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|+|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAK--TGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH--TTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCh
Confidence            479999999999999999999  899999999964

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.08  E-value=0.069  Score=56.14  Aligned_cols=33  Identities=36%  Similarity=0.502  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|+|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQR--SGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHH--TSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCc
Confidence            479999999999999999999  899999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.94  E-value=0.079  Score=50.81  Aligned_cols=34  Identities=29%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCC-CCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~  285 (728)
                      ..+|+|||+|-+|..+|..|.+  . |++|+++|++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCH
Confidence            4579999999999999999999  8 99999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.87  E-value=0.075  Score=56.38  Aligned_cols=34  Identities=24%  Similarity=0.108  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++|+|||+|.+|...|..|++  .|++|+++++..
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~--~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence            4589999999999999999999  899999999853

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.26  E-value=0.085  Score=55.72  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      +...|+|||+|.+|.++|+.|++  .|+ +|+++|+..
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~~   38 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIAE   38 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCc
Confidence            44589999999999999999999  788 999999863

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.20  E-value=0.096  Score=55.62  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ++|+|||+|.+|.+.|..|++  .|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~--~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLAL--AGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHH--TTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCEEEEEECh
Confidence            479999999999999999999  89999999985

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=91.13  E-value=0.1  Score=58.23  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|.++|..|++  .|++|+++|+..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~--aG~~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGL--AGIETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEECcH
Confidence            479999999999999999999  999999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=91.04  E-value=0.11  Score=47.02  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|+|+|-+|..+|..|.+  .|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            369999999999999999999  899999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=90.84  E-value=0.12  Score=56.83  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=31.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+++|||+|.+|+.+|..|++  .|.+|+|+|+..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~--~g~~Vtlv~~~~  182 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILD  182 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCc
Confidence            34689999999999999999999  899999999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.83  E-value=0.11  Score=58.36  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +++|.|||+|.+|+.+|..|++  .|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~--~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLAD--IGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence            4589999999999999999999  899999999863

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=90.82  E-value=0.12  Score=54.67  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.6

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK  284 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~  284 (728)
                      +...+|+|||+|.+|.++|+.|+.  .|+ +|+++|..
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~--~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQ--KELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            445689999999999999999999  888 99999987

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.81  E-value=0.12  Score=57.95  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCC-CC-cEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFP-NC-DVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~-G~-~VtVIEk~~  285 (728)
                      ..++|.|||+|.+|+.+|..|++  . |+ +|+++|++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~   53 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNS   53 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCh
Confidence            34589999999999999999999  8 99 999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.74  E-value=0.11  Score=53.73  Aligned_cols=33  Identities=36%  Similarity=0.458  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ--GGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHh--CCCcEEEEECCH
Confidence            379999999999999999999  899999999853

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=90.74  E-value=0.11  Score=55.39  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ..+|+|||||-+|.++|+.|++  .|+ +|+++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCh
Confidence            4689999999999999999999  787 899999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.71  E-value=0.12  Score=53.93  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |++..+|.|||.|.+|...|..|++  .|++|+++|+..
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~--~G~~V~~~dr~~   48 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTE--WPGGVTVYDIRI   48 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTT--STTCEEEECSST
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            3345689999999999999999999  899999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.70  E-value=0.11  Score=57.72  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|+.+|..|++  .|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~--~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE--LGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHh--cCCEEEEEECCH
Confidence            479999999999999999999  899999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.60  E-value=0.089  Score=54.80  Aligned_cols=33  Identities=36%  Similarity=0.491  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|+|||+|-+|.+.|..|++  .|++|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~--~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQ--SLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--HCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHH--CCCeEEEEEecc
Confidence            479999999999999999999  789999999973

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=90.37  E-value=0.12  Score=53.42  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+|+|||||.+|+-+|..|++  .|.+|+|+++.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~  177 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTK--FADKVTIVHRR  177 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--TCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCEEEEEecc
Confidence            479999999999999999999  89999999975

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=90.34  E-value=0.095  Score=54.56  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=29.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCC-----C-CcEEEeec
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFP-----N-CDVTVIAD  283 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~-----G-~~VtVIEk  283 (728)
                      ++|.|||+|.+|.+.|..|++  .     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~--~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLAL--RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--HHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CccccCCCCCEEEEEc
Confidence            589999999999999999999  7     8 99999998

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.32  E-value=0.15  Score=51.71  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..++|.|||+|.+|.+.|..|.+  .|++|+++++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~--~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDS--VGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHH--TTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHH--CCCEEEEecCH
Confidence            34579999999999999999999  89999999984

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.25  E-value=0.14  Score=50.91  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEE-eeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTV-IADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtV-IEk~~  285 (728)
                      ..+|.|||+|-+|.+.|..|++  .|++|++ +++..
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~--~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTA--AQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHH--TTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCCH
Confidence            4589999999999999999999  8999998 77753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.23  E-value=0.14  Score=50.71  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||+|-+|...|..|.+  .|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS--RKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            59999999999999999999  899999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.14  E-value=0.14  Score=55.29  Aligned_cols=37  Identities=14%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+...+|.|||.|.+|...|..|++  .|++|+++|+..
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~--~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRK--GGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence            5556789999999999999999999  899999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=89.99  E-value=0.16  Score=54.02  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ..+|+|||||-+|.++|+.|+.  .|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~--~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCH
Confidence            4589999999999999999999  787 899999753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=89.98  E-value=0.14  Score=57.46  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|.|||+|.+|.++|..|++  .|++|+++|+..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~--aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAAS--HGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence            3479999999999999999999  899999999864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=89.96  E-value=0.074  Score=56.16  Aligned_cols=56  Identities=32%  Similarity=0.542  Sum_probs=44.2

Q ss_pred             EeeecccCccchhhhhhhhhccc-ccccceeeccccccccccCcceEEeecCceEEE
Q psy16975        635 VHRFKAAGGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI  690 (728)
Q Consensus       635 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v  690 (728)
                      ...+..+|++|....+.++++.. -.+|.||||||.++..|.+|..++|.|||.+.+
T Consensus       149 ~~~~~~~Gv~i~~~~V~~i~~~~~~~a~~VV~A~G~~s~~l~~~~~l~p~rg~~~~~  205 (351)
T 3g3e_A          149 TERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKV  205 (351)
T ss_dssp             HHHHHHTTCEEEECCCCCHHHHHHTTCSEEEECCGGGGGGTSCCTTCEEEEEEEEEE
T ss_pred             HHHHHHCCCEEEEEEeCCHHHhhcCCCCEEEECCCcChHhhcCCCceeecCCcEEEE
Confidence            34556788988776666665533 258999999999999999999999999988743

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.86  E-value=0.15  Score=52.18  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=29.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHh--CCCCEEEEEcCc
Confidence            69999999999999999999  899999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.81  E-value=0.15  Score=53.36  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      ++|+|||+|-+|.+.|+.|++  .|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCh
Confidence            479999999999999999999  888  999999863

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=89.60  E-value=0.19  Score=52.62  Aligned_cols=37  Identities=24%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++....|.|||+|.+|...|..|++  .|++|+++|+..
T Consensus        27 ~~~~~~I~iIG~G~mG~~~a~~l~~--~g~~V~~~~~~~   63 (316)
T 2uyy_A           27 TPTDKKIGFLGLGLMGSGIVSNLLK--MGHTVTVWNRTA   63 (316)
T ss_dssp             CCCSSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSG
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence            3334689999999999999999999  899999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=89.59  E-value=0.17  Score=52.06  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=30.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++.
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~--~G~~Vt~v~~~  184 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTK--YGSKVIILHRR  184 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSS
T ss_pred             CCeEEEECCChHHHHHHHHHHH--hCCeeeeeccc
Confidence            4579999999999999999999  89999999874

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=89.55  E-value=0.13  Score=55.90  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~--~g~~Vtvv~~~~  179 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIID--SGTPASIGIILE  179 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcCC
Confidence            3579999999999999999999  899999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.48  E-value=0.17  Score=56.34  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|..+|..|++  .|++|+++|+..
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFAR--VGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            479999999999999999999  899999999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=89.47  E-value=0.19  Score=52.74  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|.|||+|.+|...|..|++  .|++|+++|+..
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~--~G~~V~~~dr~~   54 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLK--NGFKVTVWNRTL   54 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred             CCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            3579999999999999999999  899999999864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=89.38  E-value=0.16  Score=56.26  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+.+|..|++  .|.+|+|+|+..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  202 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRR--LGAEVTLIEYMP  202 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEEcCC
Confidence            589999999999999999999  899999999863

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=89.19  E-value=0.17  Score=56.48  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++|.|||+|.+|+.+|..|++...|++|+++|+..
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            357999999999999999999932289999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=89.04  E-value=0.19  Score=54.02  Aligned_cols=34  Identities=32%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||+|.+|+.+|..|++  .|.+|+|+++..
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  178 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSS--GGYQLDVVAPCE  178 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCc
Confidence            4589999999999999999999  899999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=88.90  E-value=0.18  Score=55.51  Aligned_cols=33  Identities=24%  Similarity=0.473  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+.+|..|++  .|.+|+|+|+..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~--~g~~V~lv~~~~  200 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHR--LGAEVIVLEYMD  200 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCC
Confidence            579999999999999999999  899999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=88.83  E-value=0.2  Score=49.41  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|.|||+|-+|.+.|..|++  .|++|+++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~--~g~~V~~~~~~~   52 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEI--AGHEVTYYGSKD   52 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH--TTCEEEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence            3479999999999999999999  899999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.81  E-value=0.2  Score=52.23  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLR--AGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence            4579999999999999999999  899999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=88.75  E-value=0.21  Score=53.12  Aligned_cols=33  Identities=36%  Similarity=0.454  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      .+|+|||||.+|.++|+.|+.  .|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCH
Confidence            479999999999999999999  888 999999863

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.66  E-value=0.16  Score=56.20  Aligned_cols=33  Identities=21%  Similarity=0.526  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+.+|..|++  .|.+|+|+++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  204 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARE  204 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCC
Confidence            479999999999999999999  899999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=88.64  E-value=0.21  Score=52.88  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .++|.|||+|.+|.+.|..|++  .|++|+++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~--~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHE--NGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            4579999999999999999999  89999999985

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.63  E-value=0.2  Score=55.11  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  203 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAG  203 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence            3589999999999999999999  899999999863

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.61  E-value=0.21  Score=53.67  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  176 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGA  176 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCC
Confidence            589999999999999999999  899999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=88.61  E-value=0.21  Score=55.07  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|+.+|..|++  .|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~--~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            69999999999999999999  899999999853

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=88.45  E-value=0.25  Score=52.06  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|.|||+|.+|...|..|++  .|++|+++|+..
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCE--AGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHh--CCCeEEEEcCCH
Confidence            3589999999999999999999  899999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=88.31  E-value=0.25  Score=51.11  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|.|||+|.+|...|..|++  .|++|+++|+..
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLK--EGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            4579999999999999999999  899999999853

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.19  E-value=0.19  Score=53.87  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +|.|||+|.+|.+.|..|++  .|++|+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~--~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK--KCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            79999999999999999999  89999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=88.12  E-value=0.22  Score=55.17  Aligned_cols=34  Identities=32%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  216 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQP  216 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCC
Confidence            3589999999999999999999  899999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=87.99  E-value=0.24  Score=55.01  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=31.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+.|||.|.+|+.+|..|++  .|++|+++|++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~--~G~~V~~~D~~~   41 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSD--FGHEVVCVDKDA   41 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred             ceEEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            3479999999999999999999  899999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=87.93  E-value=0.21  Score=55.41  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....|.|||.|.+||.+|..|++  .|++|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~--~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFAL--LGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHh--CCCcEEEEECCH
Confidence            34589999999999999999999  899999999763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.93  E-value=0.19  Score=55.98  Aligned_cols=34  Identities=35%  Similarity=0.458  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++|+|+|+|-+|.+.|..|.+  .|++|+|||++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~--~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVG--ENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCS--TTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence            4579999999999999999999  899999999863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=87.93  E-value=0.25  Score=52.18  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      +...|.|||+|.+|.+.|..|++  .| ++|+++|+..
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~--~G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGG--RNAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT--TTCSEEEEECGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHH--cCCCeEEEEeCCC
Confidence            34689999999999999999999  89 9999999874

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=87.81  E-value=0.27  Score=50.81  Aligned_cols=33  Identities=30%  Similarity=0.549  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK--AGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            369999999999999999999  899999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=87.67  E-value=0.26  Score=51.25  Aligned_cols=34  Identities=21%  Similarity=0.644  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||||-+|++.|..|.+  .|.+|+|++++.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~--~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence            4579999999999999999999  899999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=87.62  E-value=0.24  Score=54.57  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  200 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVING--LGAKTHLFEMFD  200 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCEEEEEEeCC
Confidence            479999999999999999999  899999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=87.57  E-value=0.24  Score=52.75  Aligned_cols=34  Identities=35%  Similarity=0.523  Sum_probs=29.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC--cEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~  284 (728)
                      ...+|+|||+|.+|.++|+.|+.  .|+  +|+++|..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~--~~~~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALIN--QGITDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCceEEEEecc
Confidence            35689999999999999999999  665  89999975

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.38  E-value=0.3  Score=49.30  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=31.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~--~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALAD--LGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence            4579999999999999999999  899999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=87.35  E-value=0.25  Score=45.42  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=30.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||+|-+|.+.|..|++  .|.+|+|+++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCH
Confidence            4579999999999999999999  888999999863

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=87.32  E-value=0.26  Score=55.20  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|+.+|..|++...|++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            47999999999999999999932279999999853

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=87.21  E-value=0.29  Score=53.26  Aligned_cols=34  Identities=24%  Similarity=0.488  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  178 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATART--AGVHVSLVETQP  178 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeCC
Confidence            4589999999999999999999  899999999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=87.20  E-value=0.28  Score=51.44  Aligned_cols=32  Identities=22%  Similarity=0.482  Sum_probs=29.5

Q ss_pred             eEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      +|+|||||-+|.++|+.|+.  .|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~--~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVL--RGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCH
Confidence            69999999999999999999  788  999999864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=86.99  E-value=0.28  Score=51.69  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCC----CcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G----~~VtVIEk~~  285 (728)
                      ++..++|.|||+|.+|.+.|..|++  .|    ++|+++++..
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~--~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTA--AGVLAAHKIMASSPDM   59 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHH--TTSSCGGGEEEECSCT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHH--CCCCCcceEEEECCCc
Confidence            3445579999999999999999999  78    8999998863

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=86.83  E-value=0.25  Score=50.31  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~  286 (728)
                      ..+|+|||+|-+|..+|..|++  .|. +|+|+|++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~--~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS--AGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH--cCCCeEEEEcCCCc
Confidence            4589999999999999999999  786 8999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.81  E-value=0.3  Score=51.39  Aligned_cols=32  Identities=38%  Similarity=0.520  Sum_probs=28.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+|+|||+|.+|.+.|..|++  .|++|+++ +.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~--~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLAR--AGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHH--TTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCeEEEE-Ec
Confidence            4579999999999999999999  89999999 54

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=86.80  E-value=0.24  Score=51.91  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=28.7

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      +|.|||+|.+|.+.|..|++  .|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~--~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVD--NGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHH--HCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHh--CCCeEEEEEc
Confidence            59999999999999999999  8999999998

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=86.35  E-value=0.31  Score=53.92  Aligned_cols=33  Identities=42%  Similarity=0.511  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~--~G~~Vtlv~~~~  199 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRS--FGSEVTVVALED  199 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCC
Confidence            479999999999999999999  899999999863

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=86.34  E-value=0.33  Score=51.36  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      ..+|+|||+|-+|.++|+.|+.  .+.  +|+++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~--~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMAL--RQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--TTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCh
Confidence            4689999999999999999999  666  899999763

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=86.22  E-value=0.35  Score=50.87  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||+|.+|.++|+.|++...|++|+++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            6999999999999999999832378999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=86.20  E-value=0.36  Score=50.84  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=29.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      .+|+|||||-+|.++|+.|+.  .|+ +|+++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~--~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAA--KELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCCc
Confidence            479999999999999999999  776 899999753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.20  E-value=0.37  Score=47.68  Aligned_cols=33  Identities=33%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|-+|.+.|..|++  .|++|+++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~--~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVG--SGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            479999999999999999999  899999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=86.10  E-value=0.43  Score=52.88  Aligned_cols=34  Identities=35%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||.|.+|+++|..|++  +|++|++.|+..
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCc
Confidence            3579999999999999999999  999999999853

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=85.93  E-value=0.33  Score=50.06  Aligned_cols=32  Identities=38%  Similarity=0.447  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~--~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVR--AGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHH--HTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            69999999999999999999  899999999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=85.90  E-value=0.28  Score=53.23  Aligned_cols=30  Identities=20%  Similarity=0.184  Sum_probs=27.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCC-CCcEEEee
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFP-NCDVTVIA  282 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIE  282 (728)
                      ++|+|||+|.+|.+.|..|++  . |++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~--~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAAS--RDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTT--STTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCCEEEEEe
Confidence            379999999999999999987  5 99999999

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=85.88  E-value=0.36  Score=53.78  Aligned_cols=34  Identities=35%  Similarity=0.451  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtlv~~~~  227 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQR--KGKEVVLIDVVD  227 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCeEEEEEccc
Confidence            4579999999999999999999  899999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=85.81  E-value=0.34  Score=53.86  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  219 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVE--LGKKVRMIERND  219 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHH--TTCEEEEECCGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCC
Confidence            34689999999999999999999  899999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=85.72  E-value=0.41  Score=50.09  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|.|||.|.+|.+.|..|++  .|++|+++|+..
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~--~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLK--QGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            3579999999999999999999  899999999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=85.54  E-value=0.37  Score=53.98  Aligned_cols=34  Identities=18%  Similarity=0.484  Sum_probs=30.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+.+|.|||+|.+|.+.|..|++  .|++|+++++.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~--~G~~V~v~~r~   47 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIES--RGYTVSIFNRS   47 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            45579999999999999999999  89999999986

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=85.44  E-value=0.43  Score=50.72  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=30.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ..+|+|||||.+|.++|+.|+.  .|+ +|+++|...
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~--~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGL--KELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCc
Confidence            4589999999999999999999  777 999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=85.44  E-value=0.39  Score=48.79  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|+|||.+|..++.+|++  .|++|+++.|..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~--~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAP--QGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGG--GTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHH--CCCEEEEEEcCh
Confidence            479999999999999999999  899999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=85.40  E-value=0.45  Score=48.50  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|+|+|.+|..++..|++  .|++|+++++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~--~g~~V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTA--QGHEVTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence            469999999999999999999  899999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=85.38  E-value=0.4  Score=56.50  Aligned_cols=33  Identities=33%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|..+|..|++  .|++|+++|+..
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~--aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALIL--SNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT--TTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHh--CCCEEEEEECCH
Confidence            469999999999999999999  899999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=85.35  E-value=0.44  Score=49.17  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|...|..|++  .|++|+++|+..
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence            479999999999999999999  899999999863

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.18  E-value=0.47  Score=50.02  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      ...|.|||+|.+|.+.|..|++  .|+  +|+++|+..
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~--~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh--CCCCCEEEEEECCH
Confidence            3579999999999999999999  898  999999864

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=85.06  E-value=0.26  Score=52.27  Aligned_cols=33  Identities=27%  Similarity=0.200  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC-------CcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN-------CDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G-------~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|.+.|..|++  .|       ++|+++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~--~g~~~~~~~~~V~~~~r~~   48 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGG--NAAQLAQFDPRVTMWVFEE   48 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--HHHHCTTEEEEEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEEEEcCh
Confidence            479999999999999999999  77       8999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=85.00  E-value=0.33  Score=53.97  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~--~G~~Vtlv~~~~  218 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMD  218 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECC
Confidence            3589999999999999999999  899999999863

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=84.94  E-value=0.34  Score=50.91  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=30.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~  284 (728)
                      ...|.|||.|.+|.+.|..|++  .|+ +|+++|+.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~--~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQ--AGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH--HSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHH--CCCCeEEEEcCC
Confidence            4589999999999999999999  899 99999995

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=84.90  E-value=0.41  Score=52.93  Aligned_cols=33  Identities=33%  Similarity=0.456  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  211 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQR--LGADVTAVEFLG  211 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH--cCCEEEEEeccC
Confidence            579999999999999999999  899999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=84.83  E-value=0.42  Score=52.35  Aligned_cols=34  Identities=26%  Similarity=0.525  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~  182 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAA  182 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeCC
Confidence            3579999999999999999999  899999999853

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=84.82  E-value=0.45  Score=47.89  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ...|+|||||-+|...|..|.+  .|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCC
Confidence            4579999999999999999999  89999999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=84.81  E-value=0.46  Score=49.79  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=29.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..|.|||+|.+|.+.|..|+ .  |++|+++|+..
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCH
Confidence            457999999999999999999 3  89999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=84.75  E-value=0.47  Score=46.26  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=29.0

Q ss_pred             eEEEee-cceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +|+||| +|.+|...|..|++  .|++|+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~--~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLAT--LGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            589999 99999999999999  89999999985

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=84.72  E-value=0.46  Score=46.46  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             ceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|+|| |.+|..++.+|++  .|++|++++|..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~--~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALN--RGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHT--TTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHH--CCCEEEEEEcCc
Confidence            57999996 9999999999999  899999999974

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=84.72  E-value=0.46  Score=49.76  Aligned_cols=32  Identities=38%  Similarity=0.533  Sum_probs=28.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|+|||+|.+|.+.|..|+   .|++|+++++..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~---~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS---LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH---TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh---cCCceEEEECCH
Confidence            47999999999999999998   378999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=84.65  E-value=0.43  Score=52.62  Aligned_cols=33  Identities=30%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+-.|..|++  .|.+|+|+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  204 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKN--YGVDVTIVEFLP  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            589999999999999999999  899999999863

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=84.56  E-value=0.4  Score=48.44  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=29.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC----CcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G----~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|.+.|..|++  .|    ++|+++++..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~--~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIAN--ANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--HTSSCGGGEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCCCCCeEEEEeCCc
Confidence            479999999999999999999  77    7999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=84.50  E-value=0.43  Score=53.26  Aligned_cols=34  Identities=32%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~  207 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSR--LGVIVKVFGRSG  207 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHH--TTCEEEEECCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECC
Confidence            4579999999999999999999  899999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=84.48  E-value=0.49  Score=52.32  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+..|||.|.+|+.+|..|++  .|++|+++|++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~--~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAK--HGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            368899999999999999999  899999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=84.45  E-value=0.51  Score=48.57  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             ceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+ |-+|.+.|..|++  .|++|+++++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD--SAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence            47999999 9999999999999  899999999863

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=84.28  E-value=0.45  Score=50.02  Aligned_cols=33  Identities=15%  Similarity=0.369  Sum_probs=29.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~--~g~~V~lv~~~~  199 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAK--NGSDIALYTSTT  199 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECC--
T ss_pred             CEEEEECCCcCHHHHHHHHHh--cCCeEEEEecCC
Confidence            479999999999999999999  899999999863

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=84.23  E-value=0.39  Score=50.69  Aligned_cols=32  Identities=31%  Similarity=0.446  Sum_probs=29.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      +|+|||+|-+|.+.|+.|++  .|+  +|+++|+..
T Consensus         2 kI~VIGaG~~G~~la~~l~~--~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLM--KGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCCh
Confidence            69999999999999999999  788  999999863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=84.23  E-value=0.54  Score=49.84  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=30.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|.++|+.|+.  .++ +|+++|...
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~--~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALI--KQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCh
Confidence            3579999999999999999999  677 999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=84.03  E-value=0.5  Score=53.19  Aligned_cols=35  Identities=11%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +...|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~--~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAAD--HGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            34579999999999999999999  899999999863

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=83.97  E-value=0.48  Score=55.75  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|..+|..|++  .|++|+++|+..
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~--aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHh--CCCEEEEEECCH
Confidence            369999999999999999999  899999999864

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=83.78  E-value=0.36  Score=53.23  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~  210 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFAS  210 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence            3589999999999999999999  799999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=83.76  E-value=0.5  Score=51.27  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtvv~~~~  176 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARK--LGLSVTILEAGD  176 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            4589999999999999999999  899999999863

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=83.75  E-value=0.4  Score=50.66  Aligned_cols=55  Identities=25%  Similarity=0.488  Sum_probs=40.7

Q ss_pred             eeecccCccchhhhhhhhhcccccccceeeccccccccccC--cceEEeecCceEEE
Q psy16975        636 HRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCN--DMHVIPVRGQTIRI  690 (728)
Q Consensus       636 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~--d~~~~~~~g~~~~v  690 (728)
                      ..+..+|++|....+.++.+....+|.||||+|.++..|..  +..++|+|||.+.+
T Consensus       150 ~~~~~~G~~i~~~~v~~l~~~~~~a~~VV~A~G~~s~~l~~~~~~~~~p~rg~~~~~  206 (363)
T 1c0p_A          150 RELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLV  206 (363)
T ss_dssp             HHHHHTTCEEEECCCSBGGGTCSSCSEEEECCGGGGGTSBTTCCTTEEEEEEEEEEE
T ss_pred             HHHHHCCCEEEEEEcccHhhcCcCCCEEEECCCcchhhccCcccCCccccCCeEEEE
Confidence            44556788876655555543211789999999999999875  78899999988743

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=83.72  E-value=0.44  Score=48.19  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCC-CcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~  284 (728)
                      .|.|||+|.+|.+.|..|++  .| ++|+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~--~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVK--QGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHH--CCCCeEEEECCC
Confidence            59999999999999999999  78 999999986

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=83.72  E-value=0.53  Score=48.04  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.4

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            59999999999999999999  899999999863

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=83.69  E-value=0.49  Score=52.18  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||.|.+|+++|..|++  +|++|++.|...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~~~   38 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRM   38 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHT--TTCCCEEEESSS
T ss_pred             CEEEEEeecHHHHHHHHHHHh--CCCEEEEEECCC
Confidence            369999999999999999999  999999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=83.60  E-value=0.65  Score=47.33  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeecccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN  286 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~  286 (728)
                      ..+|+|||+|-+|..+|..|++  .|. +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~--~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAG--AGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH--TTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHH--cCCCeEEEEeCCCc
Confidence            4689999999999999999999  776 7999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=83.58  E-value=0.54  Score=48.23  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~  176 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLAN--ICKKVYLIHRRD  176 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHT--TSSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeeCC
Confidence            4589999999999999999999  899999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=83.45  E-value=0.52  Score=52.34  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-+|..|++  .|.+|+|+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~  218 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHG--LGSETHLVIRGE  218 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCceEEEEeCC
Confidence            479999999999999999999  899999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=83.43  E-value=0.55  Score=51.90  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++|.|||+|.+|+++|..|++   |++|+++|++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ---NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc---CCeEEEEecCH
Confidence            3579999999999999999986   79999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=83.36  E-value=0.63  Score=48.44  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.2

Q ss_pred             ceEEEee-cceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.||| +|.+|.+.|..|++  .|++|+++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~--~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh--CCCeEEEEECCc
Confidence            3699999 99999999999999  899999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=83.29  E-value=0.61  Score=46.96  Aligned_cols=33  Identities=12%  Similarity=0.264  Sum_probs=30.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC----cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC----DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~----~VtVIEk~~  285 (728)
                      ..|.|||+|.+|.+.|..|++  .|+    +|+++|+..
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~--~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMIN--KNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHh--CCCCCCCeEEEEeCCH
Confidence            469999999999999999999  888    999999863

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=83.21  E-value=0.57  Score=51.42  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  181 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAA--QGKNVTMIVRGE  181 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcCC
Confidence            489999999999999999999  899999999864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=83.19  E-value=0.57  Score=52.53  Aligned_cols=34  Identities=15%  Similarity=0.336  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|.|||.|.+|.+.|..|++  .|++|+++|+..
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMND--HGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            3579999999999999999999  899999999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=83.19  E-value=0.61  Score=48.01  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~--~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMK--HGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHH--TTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            59999999999999999999  899999999863

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=83.12  E-value=0.47  Score=49.70  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=29.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~  285 (728)
                      +|+|||+|-+|.+.|+.|++  .|  .+|+++|+..
T Consensus         3 kI~VIGaG~~G~~la~~L~~--~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIA--QGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCEEEEEcCCH
Confidence            69999999999999999999  67  7999999863

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=83.06  E-value=0.58  Score=51.39  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||+|.+|+-.|..|++  .|.+|+|+++..
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  182 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSN--QNYNVNLIDGHE  182 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHh--cCCEEEEEEcCC
Confidence            4579999999999999999999  899999999863

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=83.04  E-value=0.4  Score=51.54  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=30.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC-------CcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN-------CDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G-------~~VtVIEk~~  285 (728)
                      ..|.|||+|.+|.+.|..|++  .|       ++|+++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~--~G~~~~~~~~~V~~~~r~~   61 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGT--NAKNNYLFENEVRMWIRDE   61 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHH--HHHHCTTBCSCEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHH--cCCccCCCCCeEEEEECCh
Confidence            369999999999999999999  78       8999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=83.01  E-value=0.55  Score=52.48  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~  209 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGN  209 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            3489999999999999999999  899999999853

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=83.01  E-value=0.55  Score=48.13  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .+.+|+++++..
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~  177 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAP  177 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--hCCEEEEEEeCc
Confidence            3579999999999999999999  899999998763

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=82.92  E-value=0.49  Score=52.04  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||||.+|+-.|..|++  .|.+|+|+++..
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~  180 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYE--RGLHPTLIHRSD  180 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSS
T ss_pred             CcEEEEECCccchhhhHHHHHh--cCCcceeeeeec
Confidence            3479999999999999999999  899999999863

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=82.76  E-value=0.61  Score=52.06  Aligned_cols=33  Identities=15%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+|.|||+|.+|.+.|..|++  .|++|+++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~--~G~~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVES--RGYTVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            3579999999999999999999  89999999985

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=82.75  E-value=0.61  Score=51.17  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||.|-+|..+|..|.+  .|++|+|||++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence            3479999999999999999999  899999999863

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=82.73  E-value=0.55  Score=55.43  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      -..|.|||||++|..+|+.++.  .|++|+++|...
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~--aG~~V~l~D~~~  349 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFAR--VGISVVAVESDP  349 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSH
T ss_pred             ccEEEEEcccHHHHHHHHHHHh--CCCchhcccchH
Confidence            3579999999999999999999  999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=82.60  E-value=0.59  Score=53.17  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+++|||||++|+=.|..+++  -|.+|||+++.
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~--lG~~VTii~~~  255 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNS--LGYDVTVAVRS  255 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--HTCCEEEEESS
T ss_pred             CceEEEECCCHHHHHHHHHHHh--cCCeEEEeccc
Confidence            3479999999999999999999  89999999764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=82.57  E-value=0.67  Score=47.62  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=30.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..++|+|+|-+|.++|+.|++  .|.+|+|++|..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~--~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLS--LDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHH--cCCEEEEEECCH
Confidence            479999999999999999999  889999998863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=82.38  E-value=0.69  Score=45.68  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             cceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|.|| |.+|..+|.+|++  .|++|++++|..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~--~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKN--KGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHh--CCCeEEEEECCh
Confidence            457999998 9999999999999  899999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=82.26  E-value=0.62  Score=52.10  Aligned_cols=31  Identities=26%  Similarity=0.534  Sum_probs=29.5

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +|.|||+|.+|.+.|..|++  .|++|+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~--~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAE--KGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            69999999999999999999  89999999985

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=82.24  E-value=0.69  Score=44.99  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=29.6

Q ss_pred             eEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|+|+|| |.+|..+|.+|++  .|++|+++.|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~--~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARR--RGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHH--CCCEEEEEEecc
Confidence            5999998 9999999999999  899999999864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=82.23  E-value=0.69  Score=44.72  Aligned_cols=32  Identities=31%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             eEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|+|+|| |.+|..++.+|++  +|++|++++|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~--~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKN--RGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHh--CCCEEEEEEcCc
Confidence            5999996 9999999999999  899999999863

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=82.22  E-value=0.8  Score=43.65  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=30.3

Q ss_pred             ceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.|+|+|| |.+|..++.+|++  .|++|+++++..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~--~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH--CCCeEEEEEeCh
Confidence            47999998 9999999999999  899999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=82.19  E-value=0.61  Score=48.34  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~--~g~~V~lv~~~~  192 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRD  192 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHh--cCCeEEEEecCC
Confidence            4579999999999999999999  899999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=82.12  E-value=0.63  Score=51.33  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  209 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFAR--LGSKVTVLARNT  209 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCEEEEEEECC
Confidence            3479999999999999999999  899999999853

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=82.04  E-value=0.61  Score=51.10  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++..++.+|+++++..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~  262 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS  262 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            458999999999999999999944489999998864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=82.01  E-value=0.72  Score=47.67  Aligned_cols=34  Identities=12%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC---cEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC---DVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~---~VtVIEk~~  285 (728)
                      ...|.|||+|-+|.+.|..|++  .|+   +|+++|+..
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~--~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIA--NGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHH--TTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHH--CCCCCCeEEEEeCCH
Confidence            3579999999999999999999  788   999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=81.98  E-value=0.64  Score=51.99  Aligned_cols=33  Identities=15%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|.+.|..|++  .|++|+++++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~--~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            369999999999999999999  899999999853

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=81.95  E-value=0.59  Score=48.93  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ....|+|||+|-+|+.+|.+|++  .|. +++|+|.+.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~--aGVG~i~lvD~D~Ve   72 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTR--CGIGKLLLFDYDKVE   72 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCBC-
T ss_pred             hCCeEEEECcCHHHHHHHHHHHH--cCCCEEEEECCCccC
Confidence            35689999999999999999999  664 79999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=81.90  E-value=0.65  Score=51.24  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  207 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWAR--LGAEVTVVEFAP  207 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--hCCEEEEEecCC
Confidence            3579999999999999999999  899999999863

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=81.89  E-value=0.55  Score=49.17  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=28.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      +|+|||||-+|.++|+.|++  .++  +|+++|...
T Consensus         2 kI~ViGaG~vG~~la~~l~~--~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLL--NLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCeEEEEECCh
Confidence            69999999999999999999  676  899999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=81.80  E-value=0.64  Score=53.13  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=29.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+|+|||||.+|+-+|..|++  .|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLAS--LGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCEEEEEECC
Confidence            369999999999999999999  89999999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=81.60  E-value=0.77  Score=47.23  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..++|||+|-+|.++|+.|++  .|.+|+|++|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~--~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQ--AQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHH--TTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            479999999999999999999  789999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=81.59  E-value=0.76  Score=49.15  Aligned_cols=33  Identities=33%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|.|||.|.+|.+.|..|.+  .|++|+++|+..
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHA--ANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            469999999999999999999  899999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=81.55  E-value=0.66  Score=47.66  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~--~g~~Vtlv~~~~  178 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRD  178 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCC
Confidence            3579999999999999999999  899999998863

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=81.46  E-value=0.78  Score=50.79  Aligned_cols=34  Identities=6%  Similarity=0.074  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~--~g~~V~li~~~~  230 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYK--YGAKKLISCYRT  230 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHH--TTCSEEEEECSS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHH--hCCeEEEEEECC
Confidence            4579999999999999999999  899999999764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=81.42  E-value=0.68  Score=47.90  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~  185 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTK--FADEVTVIHRRD  185 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTT--TCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeCCC
Confidence            3579999999999999999999  899999999853

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=81.37  E-value=0.85  Score=48.14  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             ceEEEeecceechh-hHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLS-TALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLS-tA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|.|||.|.+|++ .|..|++  +|++|++.|+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~   38 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKM   38 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             cEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence            37999999999997 8888989  999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=81.37  E-value=0.76  Score=50.29  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||+|.+|+.+|..|..  -|.+|+++|+..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARR--LGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence            4589999999999999999998  899999999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=81.34  E-value=0.66  Score=50.61  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=28.2

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|.+|+.+|..|++   |++|+++|+..
T Consensus         2 kI~VIG~G~vG~~~A~~La~---G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL---QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC---CCEEEEEECCH
Confidence            69999999999999999997   68999999853

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=81.22  E-value=0.76  Score=47.98  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|.+||-|.+|...|..|++  .|++|+++|+..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~--~G~~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLE--AGYELVVWNRTA   38 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEC----
T ss_pred             CcEEEEecHHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            469999999999999999999  999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=81.12  E-value=0.72  Score=52.33  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .+.+|+|+++..
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~  211 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAP--EVEHLTVFVRTP  211 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT--TCSEEEEEESSC
T ss_pred             cceEEEECCCchHHHHHHHHHh--hCCEEEEEECCC
Confidence            4589999999999999999999  899999999864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=81.12  E-value=0.81  Score=48.98  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             CcceEEEeec-ceechhhHHHhhhhCCC--CcEEEeecc
Q psy16975        249 SNHKVAILGA-GIIGLSTALELQRRFPN--CDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGA-GIiGLStA~~La~~~~G--~~VtVIEk~  284 (728)
                      ...+|+|||+ |-+|.++|+.|+.  .|  .+|+++|..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~--~g~~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAM--MRLTPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHH--TTCCSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence            3457999998 9999999999998  66  489999975

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=81.10  E-value=0.69  Score=48.78  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             CcceEEEeec-ceechhhHHHhhhhCCCC-------cEEEeecc
Q psy16975        249 SNHKVAILGA-GIIGLSTALELQRRFPNC-------DVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGA-GIiGLStA~~La~~~~G~-------~VtVIEk~  284 (728)
                      +.+.|+|+|| |.+|.+.++.|++  .|+       +|+++|..
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~--~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAA--GEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHT--TTTTCTTCCEEEEEECCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHh--CCCCCCCCCCEEEEEeCC
Confidence            3457999997 9999999999998  775       89999975

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=80.90  E-value=0.85  Score=48.58  Aligned_cols=34  Identities=15%  Similarity=0.485  Sum_probs=30.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC--cEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~  284 (728)
                      ...+|+|||+|-+|.++|+.|+.  .|.  +|+++|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~--~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILM--KDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCceEEEEeCC
Confidence            34589999999999999999999  676  89999975

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=80.89  E-value=0.76  Score=51.85  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  184 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHH--LGIKTTLLELAD  184 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCcEEEEEcCC
Confidence            489999999999999999999  899999999853

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=80.85  E-value=0.75  Score=47.28  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=29.9

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|.|||+|.+|.+.|..|++...+++|+++|+..
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            357999999999999999999832268999998753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=80.81  E-value=0.79  Score=49.63  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~~  185 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTK--FGVNVTLLEALP  185 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCC
Confidence            4579999999999999999999  899999999864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=80.80  E-value=0.79  Score=46.87  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      .|.|||+|.+|.+.|..|++  .|+  +|+++|+..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~--~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHh--cCCCcEEEEEeCCH
Confidence            69999999999999999999  788  899999863

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.78  E-value=0.86  Score=48.73  Aligned_cols=36  Identities=28%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ...|+|||+|-+|+.+|.+|+.  .|. +++|+|.+...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~--aGVg~ItlvD~D~Ve   70 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIA--WGVRKITFVDNGTVS   70 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCBCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCEec
Confidence            5689999999999999999999  775 79999998754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=80.66  E-value=0.71  Score=49.20  Aligned_cols=33  Identities=15%  Similarity=0.431  Sum_probs=29.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC--cEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~  284 (728)
                      ..+|+|||+|.+|.++|+.|+.  .|+  +|+++|..
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~--~g~~~ev~L~Di~   55 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLM--KDLADEVALVDVM   55 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHH--HCCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEECC
Confidence            4579999999999999999999  676  89999974

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=80.65  E-value=0.75  Score=51.73  Aligned_cols=32  Identities=31%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+++|||+|.+|+-.|..|++  .|.+|+|+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEecc
Confidence            369999999999999999999  89999999874

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=80.55  E-value=0.71  Score=47.84  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~--~g~~V~~v~~~~  185 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLD--TARRITLIHRRP  185 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTT--TSSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEcCC
Confidence            3589999999999999999999  899999999863

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=80.54  E-value=0.76  Score=47.91  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~--~g~~V~l~~~~~  188 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTR--FARSVTLVHRRD  188 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT--TCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--hCCeEEEEEcCC
Confidence            4589999999999999999999  899999998753

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=80.51  E-value=0.73  Score=46.58  Aligned_cols=30  Identities=20%  Similarity=0.358  Sum_probs=28.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD  283 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk  283 (728)
                      .|.|||+|.+|.+.|..|++  .|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~--~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRS--RGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHH--CCCeEEEeCC
Confidence            59999999999999999999  8999999877

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=80.37  E-value=0.7  Score=48.58  Aligned_cols=33  Identities=15%  Similarity=0.410  Sum_probs=29.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      .+|+|||||-+|.++|+.|+.  +|+  +|+++|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~--~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISA--KGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEcCCc
Confidence            579999999999999999998  677  899999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=80.25  E-value=0.71  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||+|.+|+.+|..|..  -|.+|+++|+..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKR--LGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            4589999999999999999998  789999999864

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=80.12  E-value=0.84  Score=46.04  Aligned_cols=33  Identities=15%  Similarity=0.349  Sum_probs=29.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||+|.+|.+.|..|++  .|++|+++|+..
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~--~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQ--TPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--SSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHh--CCCeEEEECCCH
Confidence            379999999999999999999  789999999863

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=80.08  E-value=0.67  Score=51.54  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+-.|..|++  .|.+|+|+++..
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  231 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWAR--LGAKVTVVEFLD  231 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEeccc
Confidence            3579999999999999999999  899999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=80.04  E-value=0.83  Score=49.31  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||+|.+|+-+|..|++  .|.+|+++++..
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~~  175 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARA--KGLEVDVVELAP  175 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCC
Confidence            4579999999999999999999  899999999863

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=80.03  E-value=0.82  Score=50.56  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||+|.+|+-+|..|++  .|.+|+|+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  220 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHD  220 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHH--cCCeEEEEEeCC
Confidence            579999999999999999999  899999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	728
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	3e-18
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	3e-16
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	2e-15
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	8e-12
d1ryia2	88	d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillu	4e-09
d1c0pa2	95	d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodot	8e-08
d1kifa2	93	d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus	2e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	8e-06
d2qv7a1	312	e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Sta	2e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	3e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	4e-05
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	6e-05
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	8e-05
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	2e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	4e-04
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	6e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	7e-04
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	7e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	9e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.001
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.001
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	0.002
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.004
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.004
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.004

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 82.6 bits (203), Expect = 3e-18
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 634 FVHRFKAAGGKVIEKYISSFSELGSE-YNTIFNCTGLGARTLCNDMHVIPVRGQTIR--- 689
              R    G K   + + SF E+     + I NCTG+ A  L  D   + +  + +R   
Sbjct: 148 LTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLQVRLEREQLRFGS 207

Query: 690 ----IVHNYGHGGYGVTSAPGSARCAVSVFEQ 717
               ++HNYGHGGYG+T   G A     +F +
Sbjct: 208 SNTEVIHNYGHGGYGLTIHWGCALEVAKLFGK 239

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 76.8 bits (188), Expect = 3e-16
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 11/155 (7%)

Query: 252 KVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFNMDTTSDGAAGLFEP--SPNFM 305
           +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P  S    
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSN 61

Query: 306 GPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMS 365
             +    ++   Y   H     + N G+  ++GYNL +         Y K ++  +++++
Sbjct: 62  PQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPD---PYWKDMVLGFRKLT 118

Query: 366 EEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
             EL      D++YG + ++L++  R +L W  ++
Sbjct: 119 PRELDM--FPDYRYGWFNTSLILEGRKYLQWLTER 151

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 75.1 bits (183), Expect = 2e-15
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 9/156 (5%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG 306
           M S  +V +LG+G+IGLS+AL L R+     V ++A     D +S   A  +  +     
Sbjct: 3   MHSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPEDVSSQTFASPWAGANWTPF 60

Query: 307 PDLETTKEWIRYSYDHYAGL--LSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRM 364
             L       ++    +     L        + G       +     H+ K + P Y+ +
Sbjct: 61  MTLTDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPL 120

Query: 365 SEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
              E           G+   TL +    +  +  ++
Sbjct: 121 PSSECPP-----GAIGVTYDTLSVHAPKYCQYLARE 151

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 64.3 bits (155), Expect = 8e-12
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 30/117 (25%)

Query: 634 FVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTL--CNDMHVIPVRGQTIR-- 689
                +  G     + ++S  +     + + N TGLGA+++   +D      R +  R  
Sbjct: 148 LARELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQARGGPRVEAERIV 207

Query: 690 --------------------------IVHNYGHGGYGVTSAPGSARCAVSVFEQSHK 720
                                     +VH YG    G   + G+A     + +++ +
Sbjct: 208 LPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQLVDEAFQ 264

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 88

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 16/69 (23%), Positives = 28/69 (40%)

Query: 533 FASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVE 592
               +     YI+P   G + +G T   G+     D     +++ +   + P I    V+
Sbjct: 18  LTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVD 77

Query: 593 KVWVGLRPY 601
           + W GLRP 
Sbjct: 78  RFWAGLRPG 86

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]} Length = 95

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 48.6 bits (115), Expect = 8e-08
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 543 YIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEIL------AAPVEKVWV 596
           YIIP  GG V  GGT   G+  L V+    + IL     + P I          V +  V
Sbjct: 30  YIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNV 89

Query: 597 GLRPYR 602
           GLRP R
Sbjct: 90  GLRPAR 95

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]} Length = 93

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 541 GAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRP 600
             YIIP    +  LGGT   GN     +  D   I      + P +  A +   + G RP
Sbjct: 32  SPYIIPGLQAVT-LGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRP 90

Query: 601 YR 602
            R
Sbjct: 91  VR 92

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG 306
           M  +++  ++G GIIG + A  L +   N +  +         T+  AAG+     +   
Sbjct: 1   MKRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGTMGGRTTSAAAGML--GAHAEC 56

Query: 307 PDLETTKEWIRYSYDHY 323
            + +   ++  +S   Y
Sbjct: 57  EERDAFFDFAMHSQRLY 73

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Length = 312

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 5   HHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAE 64
               +  +   +   + G H K P V     +A  +   +    + VDGE     P    
Sbjct: 225 EKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFT-DLQLNVDGEYGGKLPANFL 283

Query: 65  IFPGLIE 71
                I+
Sbjct: 284 NLERHID 290

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT---TSDGAAGL---FEPSPNFM 305
           ++ I+GAGI+G + A EL  R  N ++TV+ D+  ++    ++  A GL     PS    
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWN-NITVL-DQGPLNMPGGSTSHAPGLVFQTNPSKTMA 60

Query: 306 GPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMS 365
                T ++ +  + D  +                LA  +++            +     
Sbjct: 61  SFAKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAE 120

Query: 366 EEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKD 401
            +EL  +  G+   G                 +   
Sbjct: 121 CQELYPLLDGENILGGLHVPSDGLASAARAVQLLIK 156

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPD 308
           +  ++A++G  I GL+ AL L+      DV V  ++     +  G   + +P       +
Sbjct: 3   TTDRIAVVGGSISGLTAALMLRDA--GVDVDVY-ERSPQPLSGFGTGIVVQPELVHYLLE 59

Query: 309 LETTKEWIRYSYDHYAGLLSENCGV 333
                + I         + +     
Sbjct: 60  QGVELDSISVPSSSMEYVDALTGER 84

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 19/181 (10%), Positives = 51/181 (28%), Gaps = 15/181 (8%)

Query: 249 SNH-KVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTSDGAAGLFEPS---- 301
           S H  V ++GAG +G++   +L ++       ++   D  + + +  G   +   +    
Sbjct: 1   STHFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEG 58

Query: 302 ------PNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLK 355
                            ++   +      G+L      +        ++ K+ +    L 
Sbjct: 59  REYVPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLL 118

Query: 356 PVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSV 415
               + KR     + E     ++    +       R +      +        R     +
Sbjct: 119 EGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDI 178

Query: 416 E 416
            
Sbjct: 179 S 179

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 225 QNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           Q  D +    I      A          V I+GAG+ GLS A  L        VTV+
Sbjct: 9   QENDYEEFLEIARNGLKATSN----PKHVVIVGAGMAGLSAAYVLAGA--GHQVTVL 59

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 8e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 301
            +VAI+GAG  GL     L +     D  ++  +          AG+ E  
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQG 51

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
            VA++G GI GL+ A  L+ R    D  ++
Sbjct: 2   NVAVVGGGISGLAVAHHLRSR--GTDAVLL 29

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 17/102 (16%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
           KV ++G G  G + A  ++   P+ +VT+I                 EP+ ++    L  
Sbjct: 4   KVVVVGGGTGGATAAKYIKLADPSIEVTLI-----------------EPNTDYYTCYLSN 46

Query: 312 TKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHY 353
                    +             +   ++ A       +   
Sbjct: 47  EVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVK 88

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           KV +LG+   G     EL    P+ ++   
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWY 31

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 23/223 (10%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI--------------ADKFNMDTTSDGAAGL 297
           +VA++GAG+ GL+ A +L+      +VTV                D    D    GA  +
Sbjct: 3   RVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKAGGKLRSVSQDGLIWDE---GANTM 57

Query: 298 FEPSPNFMG----PDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHY 353
            E   +         L   +++       Y         +       +  +         
Sbjct: 58  TESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQ 117

Query: 354 LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTL 413
           +     ++K     ++++       +        + + +  P+     G           
Sbjct: 118 MLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHS 177

Query: 414 SVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAG 456
             EL++  +   +V+ G +  K+S              +    
Sbjct: 178 FPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQ 220

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
              +AI+GAG  GL  A+   +  PN  + +I+  + M + +  A G
Sbjct: 5   QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEG 51

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           + +  K+AI+GAG  GL TA  L        VT+ 
Sbjct: 1   LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLF 35

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
             KV I+G+G+ GL+ A +LQ      DVT++
Sbjct: 5   TGKVIIIGSGVSGLAAARQLQSF--GMDVTLL 34

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI--ADKF--NMDTTSDGAAGLFEPSPNFMGPD 308
           V ++G GI G++ A  L       +V V+   D+      T  +      +   +++GP 
Sbjct: 2   VVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT 59

Query: 309 LETTKEWIR 317
                   +
Sbjct: 60  QNRILRLAK 68

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           + K+ I+GAG  G     +L  +     V +I
Sbjct: 2   SKKILIVGAGFSGAVIGRQLAEK--GHQVHII 31

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           ++ ++G+G  G  TA  L +      V + 
Sbjct: 3   QICVVGSGPAGFYTAQHLLKHHSRAHVDIY 32

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
           +V ++GAG+ G+S A  L       D+ ++
Sbjct: 2   RVIVVGAGMSGISAAKRLSEA-GITDLLIL 30

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
           S+    ++G G    + A  ++ R P   V ++++
Sbjct: 3   SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSE 37

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
            + I GAGI GLS AL L +      VT++
Sbjct: 3   DILIAGAGIGGLSCALALHQA-GIGKVTLL 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	728
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	99.93
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.9
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.9
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.86
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.81
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.39
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	99.32
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	99.27
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.93
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.79
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.75
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.6
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.56
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.45
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.21
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.19
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.15
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.07
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.06
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.01
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.01
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.97
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.94
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.87
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.87
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.86
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.84
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.78
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.78
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.77
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.76
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.75
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.74
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.72
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.72
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.66
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.65
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.64
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.62
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.6
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.57
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.56
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.55
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.53
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.5
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.49
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.46
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.46
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.45
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.39
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.37
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.37
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.37
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.34
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.32
d2qv7a1	312	Diacylglycerol kinase DgkB {Staphylococcus aureus	97.28
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.22
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.2
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.2
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.02
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	96.96
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.87
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.84
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.81
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	96.81
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.77
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.77
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.58
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.53
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.37
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.34
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.22
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.22
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.19
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.17
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.12
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.11
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.89
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.87
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.84
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.77
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.76
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.69
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.66
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.66
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	95.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.59
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.55
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.38
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.2
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.15
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.12
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.09
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.95
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.92
d2bona1	295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	94.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.48
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.42
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.01
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.72
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.62
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.61
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.07
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.84
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.82
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.78
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.6
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.29
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.26
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.67
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.59
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	90.57
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.57
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.48
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.05
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	89.71
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.68
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	89.32
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	88.88
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	88.8
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	88.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.1
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	87.6
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.97
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.84
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	86.52
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	86.43
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	86.42
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	86.33
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.91
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	85.72
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	85.12
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	84.82
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.61
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	84.45
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.59
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.47
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.26
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.03
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	82.34
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	82.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	82.11
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	82.09
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	82.03
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	81.79

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=8.1e-28  Score=241.40  Aligned_cols=190  Identities=26%  Similarity=0.494  Sum_probs=128.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEE------EeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVT------VIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAG  325 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~Vt------VIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~  325 (728)
                      +|+||||||+||||||+|++  +|++|+      +++++..+.++|..++|+|.|..  ..+.......|+...+..+..
T Consensus         2 kV~VIGaGi~GlstA~~L~~--~G~~v~v~e~~~i~~~~~~~~~ts~~a~g~~~p~~--~~~~~~~~~~~~~~~~~~~~~   77 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHE--RYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYT--SEPSNPQEANWNQQTFNYLLS   77 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HHTTTSSSCEEEEEESCCTTSSSGGGSCCBCCCCS--SCCSSTHHHHHHHHHHHHHHT
T ss_pred             EEEEECchHHHHHHHHHHHH--CCCCceEEeeeeecccCCCCCChhHhhhceecccc--cccccHHHHHHHHHHHHHhhh
Confidence            69999999999999999999  787655      45555566788889999999853  223333456677766666555


Q ss_pred             ccc----cccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceecccccC
Q psy16975        326 LLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKD  401 (728)
Q Consensus       326 l~~----~~~Gv~~~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L~~~a  401 (728)
                      ...    ...++....++.++.+..+   ..+++....+++.++..+... .| ....++.+.++++||..|+.+|.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~id~~~~~~~L~~~~  152 (246)
T d1kifa1          78 HIGSPNAANMGLTPVSGYNLFREAVP---DPYWKDMVLGFRKLTPRELDM-FP-DYRYGWFNTSLILEGRKYLQWLTERL  152 (246)
T ss_dssp             TTTSTTTTTTTEEEEEEEEEESSCCC---CCTTTTTSEEEEECCHHHHTT-ST-TCCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred             hhccccCCceeEEEcccEEEecCchh---hhhHHhhccchhhhccccccC-Cc-ccceEEEccceEEcHHHHHHHHHHHH
Confidence            433    2345555556655554332   344555666677787776544 22 24455666689999999999999999


Q ss_pred             CCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhh
Q psy16975        402 GPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAE  481 (728)
Q Consensus       402 ~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~  481 (728)
                      .  ++|       ++|+          ..+    ++      ++++. ....+|  .|||||     |+   |+.+|.++
T Consensus       153 ~--~~G-------~~~~----------~~~----v~------~l~~~-~~~~~d--~vVnct-----G~---~a~~l~~d  192 (246)
T d1kifa1         153 T--ERG-------VKFF----------LRK----VE------SFEEV-ARGGAD--VIINCT-----GV---WAGVLQPD  192 (246)
T ss_dssp             H--HTT-------CEEE----------ECC----CC------CHHHH-HHTTCS--EEEECC-----GG---GHHHHSCC
T ss_pred             H--HCC-------CEEE----------EeE----eC------CHHHh-ccCCCC--EEEECC-----cc---cccccCCC
Confidence            9  888       3322          222    22      23333 123467  999999     99   99988775


Q ss_pred             cccccccchhccc
Q psy16975        482 NHYLKPVLPVYKR  494 (728)
Q Consensus       482 ~gi~lpv~PvRGQ  494 (728)
                      .    +++|+|||
T Consensus       193 ~----~~~~~r~~  201 (246)
T d1kifa1         193 P----LQVRLERE  201 (246)
T ss_dssp             T----TSCEEEEE
T ss_pred             C----CeeccceE
Confidence            4    35777777

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.90  E-value=1e-26  Score=242.90  Aligned_cols=207  Identities=18%  Similarity=0.167  Sum_probs=151.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc--ccCCCCccccccCCCCCCCCCchhhhhhhhhccccccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM--DTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLL  327 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g--~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~  327 (728)
                      .||+|||||++|+++||+|++  +|. +|+||||+.++  +++|++++|++.+..     ......++.+.+++.+.++.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~--~G~~~V~liE~~~~~~~~gas~~~~G~i~~~~-----~~~~~~~l~~~~~~~~~~~~   74 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGPLNMPGGSTSHAPGLVFQTN-----PSKTMASFAKYTVEKLLSLT   74 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSCTTCCCSGGGTCCCEECCCC-----SCHHHHHHHHHHHHHHHHCE
T ss_pred             CCEEEECcCHHHHHHHHHHHH--cCCCcEEEEeCCCCCCCccccccccceeccCC-----CCHHHHHHHHHHHHHHHhhh
Confidence            489999999999999999999  886 69999998654  678899999988732     23456777788888777776


Q ss_pred             ccccccEE-Eccc-ccccchhhhh----hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceec
Q psy16975        328 SENCGVQV-INGY-NLAKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPW  396 (728)
Q Consensus       328 ~~~~Gv~~-~~G~-~~a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~  396 (728)
                      + .....+ +.|. .++.+.+..+    ....++..+.+++.++.+++.+++|.    ....|++++ ++++||..++.+
T Consensus        75 ~-~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~l~~~  153 (305)
T d1pj5a2          75 E-DGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQL  153 (305)
T ss_dssp             E-TTEESEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHH
T ss_pred             h-cccccccccccccccchhhhHHHHHHHHHHHHhhcccccccchHHhhhhcccccccccccceecccccccchhhhhhh
Confidence            3 222223 4454 3444333321    12334556778899999999998875    234577776 599999999999


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccc
Q psy16975        397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKS  475 (728)
Q Consensus       397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S  475 (728)
                      |++.++  ++|       ++|+++|+ +++...++          ++++|.|.  .+.+.|+.||+|+     |+   |+
T Consensus       154 l~~~a~--~~g-------v~i~~~~~V~~i~~~~~----------~v~~V~T~--~g~i~a~~VV~aa-----G~---~s  204 (305)
T d1pj5a2         154 LIKRTE--SAG-------VTYRGSTTVTGIEQSGG----------RVTGVQTA--DGVIPADIVVSCA-----GF---WG  204 (305)
T ss_dssp             HHHHHH--HTT-------CEEECSCCEEEEEEETT----------EEEEEEET--TEEEECSEEEECC-----GG---GH
T ss_pred             HHhhhh--ccc-------ccccCCceEEEEEEeCC----------EEEEEecc--ceeEECCEEEEec-----ch---hH
Confidence            999998  888       99999998 45554433          33456665  5555555999999     99   99


Q ss_pred             hhhhhhcccccccchhccc
Q psy16975        476 EKQCAENHYLKPVLPVYKR  494 (728)
Q Consensus       476 ~~L~~~~gi~lpv~PvRGQ  494 (728)
                      .+|+.+.++.+|+.+...+
T Consensus       205 ~~l~~~~g~~lP~~~~~~~  223 (305)
T d1pj5a2         205 AKIGAMIGMAVPPDGGPLL  223 (305)
T ss_dssp             HHHHHTTTCCCCTTSCCEE
T ss_pred             HHHHHHcCCcccccccccc
Confidence            9999998877676665444

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.90  E-value=2.1e-25  Score=224.66  Aligned_cols=197  Identities=21%  Similarity=0.316  Sum_probs=124.9

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCC---CCCchhhhhhhhhcccc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFM---GPDLETTKEWIRYSYDH  322 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~---~~~~~~~~~~~~~s~~~  322 (728)
                      ||..+.+|+||||||+||+|||+|++  +|++|+||||+.++.++|+.++|.+.+.....   .........+....++.
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKK   79 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcchhhhhhhcccccccccccchhhhhhhhhHHHHHH
Confidence            46677899999999999999999999  99999999999988899999888877643111   11123444555666666


Q ss_pred             cccccccccccEEEcccc-cccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceecccccC
Q psy16975        323 YAGLLSENCGVQVINGYN-LAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKD  401 (728)
Q Consensus       323 ~~~l~~~~~Gv~~~~G~~-~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L~~~a  401 (728)
                      +.++.. ........+.. +.....+. ...........+..++..+...     ...+..++++.+||..|+.+|.+.+
T Consensus        80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~d~~~~~~~l~~~~  152 (268)
T d1c0pa1          80 WVELVP-TGHAMWLKGTRRFAQNEDGL-LGHWYKDITPNYRPLPSSECPP-----GAIGVTYDTLSVHAPKYCQYLAREL  152 (268)
T ss_dssp             HHHHTT-TTSSEEEEEEEEEESSGGGG-GGGTTTTTSTTCEECCGGGSST-----TCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHh-hhhhheeccEEEEEecchhh-hhHHHHhhccccccCchhhccc-----ccccccccceecCHHHHHHHHHHHH
Confidence            665543 22222333432 22222221 1222333444555666555433     3345666789999999999999999


Q ss_pred             CCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhh
Q psy16975        402 GPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAE  481 (728)
Q Consensus       402 ~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~  481 (728)
                      .  .+|       +.|          ...++    +      +++..  ...++  .||+|+     |+   |+..|...
T Consensus       153 ~--~~G-------v~i----------~~~~v----~------~~~~~--~~~~~--~vv~a~-----G~---~a~~l~~~  191 (268)
T d1c0pa1         153 Q--KLG-------ATF----------ERRTV----T------SLEQA--FDGAD--LVVNAT-----GL---GAKSIAGI  191 (268)
T ss_dssp             H--HTT-------CEE----------EECCC----S------BGGGT--CSSCS--EEEECC-----GG---GGGTSBTT
T ss_pred             H--HCC-------CEE----------EEeEe----c------chHHc--cccce--EEEECC-----ch---hhhhhhhh
Confidence            8  888       332          22222    1      22222  23456  999999     99   99887665


Q ss_pred             cccccccchhccc
Q psy16975        482 NHYLKPVLPVYKR  494 (728)
Q Consensus       482 ~gi~lpv~PvRGQ  494 (728)
                      .+  ..+.|.+++
T Consensus       192 ~~--~~~~~~~~~  202 (268)
T d1c0pa1         192 DD--QARGGPRVE  202 (268)
T ss_dssp             CC--TTTTSCEEE
T ss_pred             cC--ccccccccc
Confidence            44  345555554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.86  E-value=6.4e-24  Score=217.81  Aligned_cols=204  Identities=18%  Similarity=0.155  Sum_probs=147.4

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      |+.++||+||||||+|+|+||+|++  +|++|+||||+.+++++|++|+|++.+....  .......+++.++.+.|.++
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~--~G~~V~vlE~~~~~~gaS~~~~G~l~~~~~~--~~~~~~~~l~~~s~~~~~~l   76 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTMGGRTTSAAAGMLGAHAEC--EERDAFFDFAMHSQRLYKGL   76 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTTTHHHHCCCBCCGGGSC--SSCSHHHHHHHHHHHHTTTH
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCccccccccccccccc--ccccccchhhhhhhhhcccc
Confidence            5668999999999999999999999  9999999999999999999999999874321  22335566777777777665


Q ss_pred             cc---cccccE--E-Ecccc-cccchhhhhhcccccccchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCcccee
Q psy16975        327 LS---ENCGVQ--V-INGYN-LAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLP  395 (728)
Q Consensus       327 ~~---~~~Gv~--~-~~G~~-~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~  395 (728)
                      ..   ...+++  + ..|++ ++.++.+....... ......+.++.+++.+.+|.   +..+|++++ ++++||..++.
T Consensus        77 ~~~~~~~~g~~~~~~~~g~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~~~~  155 (276)
T d1ryia1          77 GEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQM-DDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCK  155 (276)
T ss_dssp             HHHHHHHHCCCCCCBCCCEEEEESSHHHHHHHHTT-TTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHH
T ss_pred             ccccccccccccccccccceeeeeecccccccccc-cccccccccccccccccCcccccceeEEEEeccceeeecccchh
Confidence            43   122333  2 44553 34444443222222 12234678899999998886   345667776 69999999999


Q ss_pred             cccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccccc
Q psy16975        396 WCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAK  474 (728)
Q Consensus       396 ~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~  474 (728)
                      +|++.++  ++|       ++|+++|+ +.|+           .+++++.|.|.  .+.+.|+.||+|+     |+   |
T Consensus       156 ~l~~~~~--~~G-------v~i~~~~~V~~i~-----------~~~~~~~V~t~--~g~i~a~~vV~Aa-----G~---~  205 (276)
T d1ryia1         156 AYVKAAK--MLG-------AEIFEHTPVLHVE-----------RDGEALFIKTP--SGDVWANHVVVAS-----GV---W  205 (276)
T ss_dssp             HHHHHHH--HTT-------CEEETTCCCCEEE-----------CSSSSEEEEET--TEEEEEEEEEECC-----GG---G
T ss_pred             HHHHHHH--HcC-------CEEecceEEEeEE-----------eecceEEEecC--CeEEEcCEEEECC-----Cc---c
Confidence            9999998  888       89998888 3332           23344456665  4555555999999     99   9


Q ss_pred             chhhhhhcccc
Q psy16975        475 SEKQCAENHYL  485 (728)
Q Consensus       475 S~~L~~~~gi~  485 (728)
                      +..|+.+.++.
T Consensus       206 s~~l~~~~G~~  216 (276)
T d1ryia1         206 SGMFFKQLGLN  216 (276)
T ss_dssp             THHHHHHTTCC
T ss_pred             HHHHHhhcCCC
Confidence            99999988753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.81  E-value=1.1e-21  Score=202.07  Aligned_cols=200  Identities=12%  Similarity=0.114  Sum_probs=142.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL  326 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l  326 (728)
                      .+|||+||||||+|+|+||+|++  +|++|+|||+...+.  ++|..+++++...+   . ......+++.++++.|.++
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~--~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~---~-~~~~~~~l~~~s~~~~~~l   75 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPHTNGSHHGDTRIIRHAY---G-EGREYVPLALRSQELWYEL   75 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSCSSSSSCSSEEEECSSC---T-TCGGGHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcccccCCCcceeeccc---C-Ccchhhhhcccccceeecc
Confidence            47999999999999999999999  999999999976543  34445555555421   1 2345677888888888777


Q ss_pred             cccccccE--EEcccccccchhhh----hhcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCcccee
Q psy16975        327 LSENCGVQ--VINGYNLAKSEKQC----AENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLP  395 (728)
Q Consensus       327 ~~~~~Gv~--~~~G~~~a~~~~~~----~~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~  395 (728)
                      .+ +.+.+  ...|++++..+.+.    +.....+..+.+++.++.+|+.+++|.    ....+++.+ ++++||..++.
T Consensus        76 ~~-e~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~  154 (281)
T d2gf3a1          76 EK-ETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIR  154 (281)
T ss_dssp             HH-HCSSCCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHH
T ss_pred             hh-hhhhccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeecccccccccccccc
Confidence            64 45544  35566554332221    112334456778899999999999886    223445555 59999999999


Q ss_pred             cccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccccc
Q psy16975        396 WCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAK  474 (728)
Q Consensus       396 ~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~  474 (728)
                      +|++.++  ++|       ++|+++|+ ++++..++.+           .|.|.  ++.+.|+.||+|+     |.   |
T Consensus       155 ~l~~~a~--~~G-------v~i~~~~~V~~i~~~~~~v-----------~V~t~--~g~i~a~~VViAa-----G~---~  204 (281)
T d2gf3a1         155 AYRELAE--ARG-------AKVLTHTRVEDFDISPDSV-----------KIETA--NGSYTADKLIVSM-----GA---W  204 (281)
T ss_dssp             HHHHHHH--HTT-------CEEECSCCEEEEEECSSCE-----------EEEET--TEEEEEEEEEECC-----GG---G
T ss_pred             ccccccc--ccc-------ccccCCcEEEEEEEECCEE-----------EEEEC--CcEEEcCEEEECC-----CC---c
Confidence            9999999  888       99999998 4555443322           34555  4555555999999     99   9


Q ss_pred             chhhhhhcccc
Q psy16975        475 SEKQCAENHYL  485 (728)
Q Consensus       475 S~~L~~~~gi~  485 (728)
                      +..|++.+++.
T Consensus       205 s~~l~~~lg~~  215 (281)
T d2gf3a1         205 NSKLLSKLNLD  215 (281)
T ss_dssp             HHHHGGGGTEE
T ss_pred             chhhHHhcCCc
Confidence            99999888754

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.39  E-value=2.5e-14  Score=122.47  Aligned_cols=67  Identities=24%  Similarity=0.439  Sum_probs=63.2

Q ss_pred             HHhhceeeeecCCceEEeccccccCcccccccccchhhhhhcccccccccccccceeeeeecccccc
Q psy16975        537 VRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH  603 (728)
Q Consensus       537 i~~~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tp  603 (728)
                      +...+.|++|+.+|.+++|+|++.+++|..++++..+.|++++.+++|.|.+++|+++|+|+||+|.
T Consensus        22 i~~~~~yiip~~~g~~~iG~T~e~~~~d~~~~~~~~~~l~~~a~~~~P~l~~~~v~~~waGlRP~t~   88 (88)
T d1ryia2          22 LYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTK   88 (88)
T ss_dssp             EEETTEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEECS
T ss_pred             EeCCCEEEEECCCCCEEEccEEEECCCCCCCCHHHHHHHHHHHHHHCCCcCCCcEeEEEEeeCCCCC
Confidence            3456789999999999999999999999999999999999999999999999999999999999984

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=1.4e-13  Score=118.84  Aligned_cols=64  Identities=31%  Similarity=0.454  Sum_probs=60.7

Q ss_pred             hhceeeeecCCceEEeccccccCcccccccccchhhhhhcccccccccccccceeeeeecccccc
Q psy16975        539 LAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH  603 (728)
Q Consensus       539 ~~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tp  603 (728)
                      ....|++|+.++ +++|||.+.+++|..++++.++.|++++.+++|.|+++++++.|+|+||+||
T Consensus        30 ~~~~yivpr~~~-~viG~T~e~~~~d~~~~~~~~~~i~~~a~~~~P~l~~~~i~~~~~GlRP~rP   93 (93)
T d1kifa2          30 YNSPYIIPGLQA-VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRP   93 (93)
T ss_dssp             TCSCEEEECSSS-EEEECCCEETCCCCSCCHHHHHHHHHHHHHHSGGGGGCEEEEEEEEEEEECS
T ss_pred             CCceEEEECCCC-EEEEEEeecCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCeeeEEEeecCCCC
Confidence            467899999877 8899999999999999999999999999999999999999999999999986

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.27  E-value=3e-13  Score=117.28  Aligned_cols=64  Identities=39%  Similarity=0.517  Sum_probs=59.6

Q ss_pred             hhceeeeecCCceEEeccccccCcccccccccchhhhhhcccccccccc------cccceeeeeeccccc
Q psy16975        539 LAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEIL------AAPVEKVWVGLRPYR  602 (728)
Q Consensus       539 ~~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~------~~~I~~~waGlRP~t  602 (728)
                      ....|++|+.+|.+++|||.+.++||..++++..+.|++++.+++|+|.      +++|+++|+|+||.|
T Consensus        26 ~~~~Yiipr~~g~vviG~T~e~~~~d~~~~~~~~~~il~~a~~~~P~L~~~~~~~~~~v~~~~~GlRP~R   95 (95)
T d1c0pa2          26 ASPAYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPAR   95 (95)
T ss_dssp             TCCEEEEEETTTEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEEE
T ss_pred             CCeEEEEECCCCEEEEEEEEEECCCcCCCCHHHHHHHHHHHHHhCccccccccccCccEEEeEEEeCCCC
Confidence            4568999999999999999999999999999999999999999999994      678999999999975

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.93  E-value=6.5e-12  Score=129.93  Aligned_cols=51  Identities=22%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ..++||+|||||++||++|++|++  .|.+|+||||.....++|..++|.+..
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~~~gG~s~~s~G~~~~   64 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAKLAAGGMNA   64 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcceecCCCCcc
Confidence            357899999999999999999999  999999999998888888888766554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.79  E-value=3.5e-11  Score=125.44  Aligned_cols=51  Identities=22%  Similarity=0.292  Sum_probs=44.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ..++||+|||+|++||++|++|++  .|++|+||||.....++|..++|.+..
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~~~gG~s~~s~Ggi~~   71 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTKLAAGGMNA   71 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCcceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccCCcccc
Confidence            446899999999999999999999  999999999998777888777665543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.75  E-value=4.9e-11  Score=124.35  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      ..++||+|||||++||++|++|++  .|.+|+||||.....++|..++|.+..
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~--~G~~V~vlEK~~~~gG~S~~a~Ggi~a   67 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGNSMISAGGMNA   67 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchhhcCCCccc
Confidence            457899999999999999999999  899999999998888888888776654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.60  E-value=7.4e-10  Score=110.26  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=34.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ++|||+|||||++||++|+.|++  .|++|+||||....
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~   37 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKL   37 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            47999999999999999999999  99999999997543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1.2e-08  Score=98.16  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=35.2

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |..+|||||||||+.||++|+.|++  .|++|+|||++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~--~G~~V~vlE~~~   38 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQD   38 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCC
Confidence            6789999999999999999999999  999999999975

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.21  E-value=1.8e-08  Score=98.65  Aligned_cols=99  Identities=30%  Similarity=0.562  Sum_probs=89.3

Q ss_pred             cccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccc-cccceeeccccccccccCcceEEeecCceE-
Q psy16975        611 LTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGS-EYNTIFNCTGLGARTLCNDMHVIPVRGQTI-  688 (728)
Q Consensus       611 ~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~-  688 (728)
                      .++++.|+.||             +..|..+|++|+++++++++|+.. .+|+||||||++|++|++|..++|+|||.+ 
T Consensus       138 ~id~~~~~~~L-------------~~~~~~~G~~~~~~~v~~l~~~~~~~~d~vVnctG~~a~~l~~d~~~~~~r~~~lr  204 (246)
T d1kifa1         138 ILEGRKYLQWL-------------TERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLQVRLEREQLR  204 (246)
T ss_dssp             EECHHHHHHHH-------------HHHHHHTTCEEEECCCCCHHHHHHTTCSEEEECCGGGHHHHSCCTTSCEEEEEEEE
T ss_pred             EEcHHHHHHHH-------------HHHHHHCCCEEEEeEeCCHHHhccCCCCEEEECCcccccccCCCCCeeccceEEEe
Confidence            35566777776             778889999999999999999876 589999999999999999999999999876 


Q ss_pred             ------EEEeecccCccccccCCCCceeeeeeeecccccc
Q psy16975        689 ------RIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKAS  722 (728)
Q Consensus       689 ------~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~~~~  722 (728)
                            .|||||||||.|+|+|||||++|++|+++.+++.
T Consensus       205 ~~~~~~~vvh~yghgg~G~~l~~G~a~~~~~lv~~~l~~~  244 (246)
T d1kifa1         205 FGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEER  244 (246)
T ss_dssp             SSSCEEEEEEEECCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCEEEEecCCCCCeEEeehHHHHHHHHHHHHHHHhc
Confidence                  5999999999999999999999999999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.19  E-value=2.2e-07  Score=95.98  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=41.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcc-cc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA-GL  297 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~ag-Gi  297 (728)
                      ..+||+|||+|++||++|++|++  +|.+|+||||.....++|.++. |+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~~~~g~S~~a~GGi   51 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVKRSHSAAAQGGM   51 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGGGSGGGGCCSCE
T ss_pred             eecCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCCchhhccchH
Confidence            35799999999999999999999  9999999999988888887764 44

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.3e-07  Score=90.50  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=33.0

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .++.+|||||||++||++|++|++  .|++|+|+|+..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            346689999999999999999999  999999999965

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.07  E-value=6.7e-07  Score=85.62  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      .||+|||||++||++|++|++  .|+ +|+|||+..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~--~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE--AGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHh--CCCCcEEEEECCC
Confidence            389999999999999999999  896 799999974

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.06  E-value=7.1e-07  Score=88.01  Aligned_cols=33  Identities=30%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +||+|||||++||++|++|++  .|++|+|||+..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            489999999999999999999  899999999975

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=9.8e-07  Score=89.72  Aligned_cols=32  Identities=28%  Similarity=0.494  Sum_probs=30.7

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ||+|||||++||++|++|++  .|++|+|||+..
T Consensus         1 DViVIGaG~aGL~aA~~L~~--~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD--SGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            89999999999999999999  999999999965

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=8.5e-07  Score=90.82  Aligned_cols=50  Identities=28%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE  299 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~  299 (728)
                      +..++||||||+|++||++|+++++  .| +|+||||.....++|..++|-+.
T Consensus         4 p~~~~DVvVVG~G~AGl~AA~~a~~--~g-~V~llEK~~~~gG~s~~a~Ggi~   53 (305)
T d1chua2           4 PEHSCDVLIIGSGAAGLSLALRLAD--QH-QVIVLSKGPVTEGSTFYAQGGIA   53 (305)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHTT--TS-CEEEECSSCTTC-----------
T ss_pred             CcccCCEEEECccHHHHHHHHHhhc--CC-CEEEEECCCCCCCchHHhCcceE
Confidence            3467999999999999999999988  77 99999999888888877755443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.97  E-value=1.3e-06  Score=87.89  Aligned_cols=35  Identities=37%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||++||++|++|++  +|++|+|||+..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            34589999999999999999999  899999999975

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.94  E-value=1.2e-06  Score=87.24  Aligned_cols=37  Identities=32%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |.+.+||+|||||.+||++|++|++  .|++|+||||..
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~--~G~~V~vlEk~~   37 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGK   37 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            4567899999999999999999999  899999999975

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=1.8e-06  Score=89.62  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=41.4

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF  298 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii  298 (728)
                      ..++||+|||+|++||++|+++++  .|.+|+||||.....+.|..+.|-+
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~--~G~~V~lleK~~~~gg~s~~A~GGi   53 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRSHTVSAQGGI   53 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCGGGSGGGGCCSCE
T ss_pred             cccCCEEEECcCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCcHHHHhhhH
Confidence            457999999999999999999999  8999999999887666666554333

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.3e-06  Score=87.72  Aligned_cols=37  Identities=30%  Similarity=0.324  Sum_probs=33.1

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMD  288 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~  288 (728)
                      ++||+|||||++||++|++|++  .|++|+|+|+.. +|+
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~--~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSG
T ss_pred             CccEEEECCcHHHHHHHHHHHh--CCCcEEEEECCCCccc
Confidence            3699999999999999999999  899999999965 444

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.86  E-value=2.7e-06  Score=83.59  Aligned_cols=32  Identities=38%  Similarity=0.587  Sum_probs=30.5

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||++||++|++|++  .|++|+|||+..
T Consensus         3 kV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~   34 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEG   34 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TSCEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            69999999999999999999  999999999965

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=4.2e-06  Score=84.49  Aligned_cols=50  Identities=28%  Similarity=0.459  Sum_probs=37.9

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      .++||+|||||.+||++|++|+++ .|++|+|||+.... |...+++|.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~-GG~~~~~g~~~~   81 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSP-GGGAWLGGQLFS   81 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSC-CTTTTCCSTTCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCC-CCceeecCEEcC
Confidence            478999999999999999999872 49999999997422 223344554444

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=3.5e-06  Score=81.76  Aligned_cols=37  Identities=19%  Similarity=0.406  Sum_probs=34.6

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |..+|||+|||||.+|+++|.+|++  .|.+|+|||+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~   38 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence            6678999999999999999999999  999999999864

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.78  E-value=3.8e-06  Score=86.99  Aligned_cols=37  Identities=30%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |..+|||||||+|..|+++|..|++  +|++|+|||++.
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~--~G~kVlvLEaG~   37 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGE   37 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhh--CCCeEEEEecCC
Confidence            4678999999999999999999999  999999999964

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.77  E-value=4.7e-06  Score=86.33  Aligned_cols=49  Identities=16%  Similarity=0.177  Sum_probs=39.5

Q ss_pred             CcceEEEeecceechhhHHHhhhh--CCCCcEEEeecccccccCCCCcccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFNMDTTSDGAAGL  297 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~--~~G~~VtVIEk~~~g~gAS~~agGi  297 (728)
                      .++||+|||+|++||++|++|++.  .+|.+|+||||.....++|..+++.
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~   70 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLS   70 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEE
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhHHHHHH
Confidence            468999999999999999999852  2699999999988766666555443

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=4.5e-06  Score=85.97  Aligned_cols=52  Identities=27%  Similarity=0.412  Sum_probs=42.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCc-cccccC
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP  300 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~a-gGii~p  300 (728)
                      .++||+|||+|++||++|+++++..+|.+|+||||.....+.|.++ ||+...
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~   56 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAV   56 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECC
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhh
Confidence            3689999999999999999999855688999999988766666655 444443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.75  E-value=6.8e-06  Score=80.92  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=32.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||++||++|+.|++  .|++|+||||..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            34589999999999999999999  999999999964

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.74  E-value=5.6e-06  Score=79.69  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=34.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ++|||+|||||.+|+++|++|++  .|.+|+|||+...+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar--~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccCC
Confidence            57999999999999999999999  89999999997644

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.72  E-value=6.2e-06  Score=87.59  Aligned_cols=53  Identities=23%  Similarity=0.360  Sum_probs=40.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhh----CCCCcEEEeecccccccCCCCccccccC
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRR----FPNCDVTVIADKFNMDTTSDGAAGLFEP  300 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~----~~G~~VtVIEk~~~g~gAS~~agGii~p  300 (728)
                      +.+++||||||||.+||++|+.|++.    .+|++|+||||+... ++--..||++.+
T Consensus        29 ~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p-G~k~~~Ggvl~~   85 (380)
T d2gmha1          29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI-GAHTLSGACLDP   85 (380)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST-TTTCCCCCEECT
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC-CCCccccccccH
Confidence            34579999999999999999999961    279999999997532 222344666655

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=6.3e-06  Score=79.54  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=33.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +|||+|||||.+|+++|.+|++  .|.+|+|||++.+|
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~~~G   37 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAM--YGQKCALIEAKELG   37 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeccCcC
Confidence            6999999999999999999999  89999999997654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.66  E-value=4.6e-06  Score=83.89  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.||+|||||++||++|+.|++  .|++|+||||..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~--~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            5689999999999999999999  899999999975

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.1e-05  Score=76.71  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ....+|+|||||.+||++|+.|++  +|++|+|+|+..
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccC
Confidence            345789999999999999999999  999999999975

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.64  E-value=9.4e-06  Score=78.17  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|||+|||||.+|+++|++|++  .|.+|+|||+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~   36 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRG   36 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence            47999999999999999999999  899999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.62  E-value=9.4e-06  Score=83.12  Aligned_cols=38  Identities=34%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             cCcceEEEeecceechhhHHHhhhh---CCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRR---FPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~---~~G~~VtVIEk~~  285 (728)
                      ...|||+|||||++||++|..|++.   ..|++|+||||..
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            4569999999999999999999741   2799999999975

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.60  E-value=1.3e-05  Score=82.84  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMD  288 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~  288 (728)
                      +.+|+|||||++||++|+.|++  .|++|+|+|+.. +|+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCcC
Confidence            3479999999999999999999  899999999975 443

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=1.3e-05  Score=77.11  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=34.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .++||+|||||.+|+++|.++++  .|.+|+|||++.++
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~~~G   38 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGNLG   38 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCEEEEEecCCCC
Confidence            47899999999999999999999  99999999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.56  E-value=1.4e-05  Score=82.00  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=34.0

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++...||+|||||++||++|++|.+  .|.+|+|+|+..
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~   40 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAG   40 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCC
Confidence            4567899999999999999999999  899999999974

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=1.8e-05  Score=77.10  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .|||+|||||.+|+++|+++++  .|++|+|||+...+
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence            6899999999999999999999  89999999997654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.53  E-value=1.5e-05  Score=77.67  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..|||+|||||.+||++|++|++  .|++|+|||+...
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence            47999999999999999999999  9999999998653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=1.9e-05  Score=77.88  Aligned_cols=33  Identities=39%  Similarity=0.525  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~  285 (728)
                      .||+|||||++||++|+.|++  .|. +|+|+||..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCC
Confidence            489999999999999999999  895 999999975

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.9e-05  Score=76.10  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=34.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .+||++|||||.+|+++|.++++  .|.+|+|||++..+
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar--~G~kV~vIEk~~~G   38 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAE--LGARAAVVESHKLG   38 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             CccCEEEECCCHHHHHHHHHHHH--CCCEEEEEeccCCC
Confidence            36899999999999999999999  89999999997654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=2.2e-05  Score=73.34  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|||+|||||.+|+++|+++++  .|.+|+|||++.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar--~G~~v~iie~~~   34 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGERF   34 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSST
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--cCCeEEEEEEec
Confidence            4899999999999999999999  999999999863

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=2.6e-05  Score=73.42  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~  285 (728)
                      ..+|+|||||.+||++|++|++  .|++ |+|+||..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~--~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLAR--LGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHH--CCCCeEEEEEecC
Confidence            3479999999999999999999  8985 99999964

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.45  E-value=1.7e-05  Score=76.70  Aligned_cols=37  Identities=14%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      .++|++|||||.+|+++|+++++  .|.+|+|||++..|
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~--~G~~V~liE~~~~G   40 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQALG   40 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCTT
T ss_pred             cccCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            57899999999999999999999  89999999998654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=2.6e-05  Score=73.79  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.6

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      +..||+|||||.+|+++|++|++  .|.+|+|||+...+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~~~~   40 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKG   40 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCceEEEEeeccc
Confidence            46799999999999999999999  89999999987643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.37  E-value=3.7e-05  Score=74.69  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+||++|.+|++...|++|+|+|+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            37999999999999999998854688999999974

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.37  E-value=5.4e-05  Score=74.14  Aligned_cols=52  Identities=21%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             CCceeeEEeecCCCCCCCccccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        227 GDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       227 ~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.-|...|.+....     ......+|+|||||.+|+++|++|++  +|++|+|+|+..
T Consensus        31 ~~e~~~~~~p~~~~-----~~~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~   82 (233)
T d1djqa3          31 GEEYRRGWHPEKFR-----QTKNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAE   82 (233)
T ss_dssp             TTHHHHCCCSSCCC-----CCSSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             ChHHhcCCCCCccC-----cccCCceEEEEcccHHHHHHHHHHHH--hccceeeEeecc
Confidence            44455545553322     23467799999999999999999999  999999999875

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.37  E-value=2.3e-05  Score=76.00  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCC-------CcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPN-------CDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G-------~~VtVIEk~~  285 (728)
                      ++|+|||||.+||++|++|++  .|       ++|+|+|+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~--~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLK--AADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--HHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHH--cCCccccCCCceEEEecCC
Confidence            589999999999999999999  55       6899999964

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.34  E-value=3.3e-05  Score=80.49  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .++||||||+|..|+.+|+.|++  +|++|+|||++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            46899999999999999999999  99999999986

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=4.1e-05  Score=78.29  Aligned_cols=37  Identities=32%  Similarity=0.500  Sum_probs=33.2

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+||+|||||.+||++|++|+++.+|++|+|+|++.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            3679999999999999999999744699999999975

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.28  E-value=0.00015  Score=74.15  Aligned_cols=70  Identities=17%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccccc
Q psy16975          6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTT   76 (728)
Q Consensus         6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~~   76 (728)
                      +.+++.++.+|..+-+|.|+..+.|.|.+++.++|++..+ -.+.||||.+...|++.+|+|+..+.++.+
T Consensus       226 ~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~~-~~~~iDGE~~~~~p~~i~v~p~al~vlvP~  295 (312)
T d2qv7a1         226 KSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTD-LQLNVDGEYGGKLPANFLNLERHIDVFAPN  295 (312)
T ss_dssp             CCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSSC-CEEEETTEEEEESCEEEEEEEEEEEEECCT
T ss_pred             CCCHHHHHHHHHHHhcCCcCCCCCEEEEEeCEEEEEeCCC-CEEEEcCCCCCCCceEEEEECCEEEEECCC
Confidence            3689999999999999999999999999999999998763 578999999999999999999988566544

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.22  E-value=7.7e-05  Score=76.79  Aligned_cols=38  Identities=34%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +....|+|||||++||++|++|+++..+++|+|+||..
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            34457999999999999999999832347999999974

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.22  E-value=6e-05  Score=71.50  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~  286 (728)
                      ..+||+|||||.+|+++|++|++  .|.+|+|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecc
Confidence            46899999999999999999999  9999999998653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.20  E-value=6.7e-05  Score=74.57  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=32.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM  287 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g  287 (728)
                      ||++|||||.+|+++|.++++  .|.+|+|||++..|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~--~G~~V~liE~~~~G   36 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR--HNAKVALVEKSRLG   36 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSTT
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCC
Confidence            799999999999999999999  99999999997654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.20  E-value=6.3e-05  Score=78.03  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .||||||+|..|+.+|+.|++  +|++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHH--CcCeEEEEecCC
Confidence            599999999999999999999  999999999963

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.02  E-value=0.00012  Score=76.48  Aligned_cols=34  Identities=24%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .||+||||+|.+|+.+|..|++  .|.+|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae--~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhh--CCCeEEEEEccC
Confidence            6899999999999999999999  899999999984

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=96.96  E-value=0.00025  Score=69.67  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=32.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|||+|||||-+|+++|+++++  .|.+|.||+++.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR--~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEEecc
Confidence            6899999999999999999999  999999999864

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.87  E-value=0.0003  Score=67.73  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeecccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN  286 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~  286 (728)
                      +.|||+|||||.+|+++|.++++  .|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~--~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAAT--LYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHH--TSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEeecc
Confidence            47999999999999999999999  665 6889988653

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.84  E-value=0.00019  Score=75.48  Aligned_cols=36  Identities=36%  Similarity=0.495  Sum_probs=32.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++||+||||||.+|+.+|..|++. ++++|+|||++.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCC
Confidence            469999999999999999999983 458999999974

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.81  E-value=0.00022  Score=75.34  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=32.1

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~  285 (728)
                      .+||+||||||.+|+.+|..|++  .+ ++|+|||++.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae--~~~~~VLlLEaG~   58 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTE--NPKIKVLVIEKGF   58 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT--STTCCEEEEESSC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHH--CCCCeEEEEcCCC
Confidence            46999999999999999999999  55 8999999984

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.81  E-value=0.00023  Score=69.22  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=32.4

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      .+|||+|||||.+|+++|.++++  .|. +|+|+|+...+
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~--~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAAS--LHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--HHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEEeccC
Confidence            57999999999999999999999  665 69999987644

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.77  E-value=0.00029  Score=69.88  Aligned_cols=36  Identities=11%  Similarity=0.062  Sum_probs=33.5

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+||++|||||.+|+.+|+.|++  .|.+|+|||+..
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~   75 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWP   75 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccC
Confidence            468999999999999999999999  899999999864

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.77  E-value=0.00022  Score=74.28  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=32.8

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..+||+||||+|.+|+.+|..|++  . ++|+|||++.
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae--~-~kVLvLEaG~   58 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSE--K-YKVLVLERGS   58 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTT--T-SCEEEECSSB
T ss_pred             ccCCccEEEECccHHHHHHHHHhcC--C-CCEEEEecCC
Confidence            4567999999999999999999998  5 8999999985

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.58  E-value=0.00053  Score=62.93  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||||.+|.++|.+|++  .|++|+|+||..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCh
Confidence            479999999999999999999  899999999975

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.53  E-value=0.00067  Score=59.03  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-.|..|++  .|.+|||+|+..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~   55 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAG   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CeEEEECCCccceeeeeeecc--cccEEEEEEecc
Confidence            579999999999999999999  899999999865

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.37  E-value=0.00075  Score=61.46  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|||||||.+|+.+|.+|.+..+..+|+|||++.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            7999999999999999999954557899999864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.34  E-value=0.00096  Score=58.70  Aligned_cols=34  Identities=24%  Similarity=0.488  Sum_probs=31.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||||.+|+-+|..|++  +|.+|+|+|+..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATART--AGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhc--ccceEEEEeecc
Confidence            4589999999999999999999  999999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.22  E-value=0.0012  Score=57.80  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=31.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+-.|..|++  .|.+|+|+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHh--ccccceeeehhc
Confidence            3579999999999999999999  899999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.22  E-value=0.001  Score=58.41  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=31.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||||.+|+-+|..|++  .|.+|+|+|+..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhc--ccceEEEEeccc
Confidence            3589999999999999999999  899999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.19  E-value=0.0012  Score=58.00  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+-+|..|++  .|.+|+|+|+..
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~   63 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILD   63 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHhhc--cceEEEEEEecC
Confidence            3489999999999999999999  999999999964

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0012  Score=57.50  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+-+|..|++  .|.+|+|+|+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVING--LGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhc--cccEEEEEeecc
Confidence            479999999999999999999  899999999964

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.12  E-value=0.0012  Score=57.33  Aligned_cols=33  Identities=21%  Similarity=0.526  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-+|..|++  .|.+|+|+|+..
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhh--cccceEEEeeec
Confidence            479999999999999999999  899999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.11  E-value=0.0014  Score=58.56  Aligned_cols=34  Identities=26%  Similarity=0.525  Sum_probs=31.6

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||.+|+-+|..|++  .|.+|+|+|+..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHh--hCcceeeeeecc
Confidence            4589999999999999999999  899999999865

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0022  Score=56.34  Aligned_cols=33  Identities=33%  Similarity=0.507  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||++|+-.|..|++  .|.+|+|+++..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHh--hCcceeEEEecc
Confidence            479999999999999999999  999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0017  Score=58.97  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|+|||+|.+|...|..|++  .|++|++++|..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCceEEEEcCH
Confidence            369999999999999999999  999999999853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.84  E-value=0.0025  Score=55.61  Aligned_cols=33  Identities=33%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||++|+=.|..|++  .|.+|+|+++..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHHHH--cCCceEEEEeec
Confidence            579999999999999999999  899999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.77  E-value=0.0022  Score=60.35  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||.+|+.+|..|.+..++.+|+|++++.
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6999999999999999999966788999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.76  E-value=0.0015  Score=57.54  Aligned_cols=33  Identities=33%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||++|+=.|..|++  .|.+|||+++..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~   58 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFAS   58 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CeEEEEccchHHHHHHHHHHh--cCCeEEEEEEcc
Confidence            479999999999999999999  899999999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0023  Score=56.26  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+++|||||.+|+-.|..|++  .|.+|+|+++..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhc--CCcEEEEEeecc
Confidence            479999999999999999999  899999999964

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0025  Score=60.45  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||||.+|.++|+.++.  .|++|+++|++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence            479999999999999999999  999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.66  E-value=0.0032  Score=55.25  Aligned_cols=32  Identities=31%  Similarity=0.325  Sum_probs=29.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+++|||||++|+-.|..|++  -|.+|+|++++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhh--cCCeEEEEEec
Confidence            479999999999999999999  89999999865

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.64  E-value=0.0024  Score=61.84  Aligned_cols=37  Identities=30%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             ceEEEeecceechhhHHHhhhhC-CCCcEEEeeccccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNM  287 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~-~G~~VtVIEk~~~g  287 (728)
                      .+|+|||||.+|+++|+++++.. ++.+|+|+|++.++
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~G   39 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIG   39 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCC
Confidence            37999999999999999988732 56789999997654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0029  Score=52.70  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||.|.+|+|+|.+|++  .|.+|++.|...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~   38 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRM   38 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSS
T ss_pred             CEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCc
Confidence            369999999999999999999  899999999865

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.55  E-value=0.0028  Score=58.49  Aligned_cols=33  Identities=24%  Similarity=0.102  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||||.+|++.|..|++  .|++|+++|+..
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            369999999999999999999  899999999863

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.38  E-value=0.003  Score=59.60  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|||||.+|.+.|..++.  .|++|+++|++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            369999999999999999999  899999999863

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.20  E-value=0.0041  Score=54.80  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+++|||||++|+=.|..|++  .|.+|+|+|+..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~--~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhc--CCCEEEEEEeec
Confidence            3479999999999999999999  899999999853

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.15  E-value=0.0041  Score=57.05  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      -+|+|||||.+|+.+|.+|++  .|.+|+|++...
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~--~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHH--cCCceEEEEecC
Confidence            489999999999999999999  899999888764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.12  E-value=0.0033  Score=60.22  Aligned_cols=86  Identities=19%  Similarity=0.352  Sum_probs=69.6

Q ss_pred             eeecccCccchhhhhhhhhcccccccceeeccccccccccC--cceEEee----------------------------cC
Q psy16975        636 HRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCN--DMHVIPV----------------------------RG  685 (728)
Q Consensus       636 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~--d~~~~~~----------------------------~g  685 (728)
                      ..+..+|++|+..+++++++....+|+||||+|++|..|.+  |..+.|.                            ..
T Consensus       150 ~~~~~~Gv~i~~~~v~~~~~~~~~~~~vv~a~G~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (268)
T d1c0pa1         150 RELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQARGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKE  229 (268)
T ss_dssp             HHHHHTTCEEEECCCSBGGGTCSSCSEEEECCGGGGGTSBTTCCTTTTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCC
T ss_pred             HHHHHCCCEEEEeEecchHHccccceEEEECCchhhhhhhhhcCccccccccceEEEEEeccccccceeccCCceeceec
Confidence            35678899999999999999888999999999999987732  2212222                            22


Q ss_pred             ceEEEEeecccCccccccCCCCceeeeeeeeccccc
Q psy16975        686 QTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKA  721 (728)
Q Consensus       686 ~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~~~  721 (728)
                      +...|+|||||||.||++|||||+.+++||.+.+++
T Consensus       230 ~~~~vv~~~g~~g~G~~~s~g~a~~~~~lv~~~~~~  265 (268)
T d1c0pa1         230 KEVTLVHAYGFSSAGYQQSWGAAEDVAQLVDEAFQR  265 (268)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEecCCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999987654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.09  E-value=0.0049  Score=53.35  Aligned_cols=33  Identities=6%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|+|||||.+|+-.|..|++  .|.+|+++++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~   55 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTE   55 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cchhheEeeccc
Confidence            589999999999999999999  899999999864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0055  Score=58.63  Aligned_cols=38  Identities=18%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.++++||||||.+|+.+|..|.+.....+|++|+++.
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            35779999999999999999998844456799998863

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.95  E-value=0.0057  Score=58.12  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=29.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|.|||.|.+|+++|..|++  .|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~--~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHh--CCCcEEEEeCCH
Confidence            59999999999999999999  999999999763

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.92  E-value=0.0051  Score=55.69  Aligned_cols=31  Identities=39%  Similarity=0.507  Sum_probs=27.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||.+|+.+|..|++   +.+|+|+++..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc---CCCEEEEeccc
Confidence            69999999999999999966   56999999864

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0051  Score=61.77  Aligned_cols=51  Identities=18%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             ccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccc
Q psy16975         24 HIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVT   75 (728)
Q Consensus        24 h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~   75 (728)
                      |...+.+.|.+++.++|++.. .-.+.||||.+...|++++|+|+-.+.++.
T Consensus       238 ~~~~~~v~~~~~~~v~I~~~~-~~~~~iDGE~~~~~p~~i~v~P~aL~vlvP  288 (295)
T d2bona1         238 DEDNPNIIEGASSWFDIQAPH-DITFNLDGEPLSGQNFHIEILPAALRCRLP  288 (295)
T ss_dssp             TCCCTTEEEEEESEEEEEEEE-EEEEEETTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred             cCCCCCEEEEEeEEEEEEeCC-CCEEEecCCCCCCCceEEEEECCEEEEECC
Confidence            346689999999999999865 357899999999999999999998856654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.48  E-value=0.0051  Score=56.81  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +.+|+|||||.+|+.+|..|.+  .|.+|+|++..
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~--~g~~v~i~~~~   35 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQ--AGYQGLITVVG   35 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHH--HTCCSCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHh--cCCceEEEEEe
Confidence            4469999999999999999999  67777777654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.42  E-value=0.0074  Score=56.99  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...+|+|||||-.|.+.|..|++  .|++|++++++.
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~~   40 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSK--KCREVCVWHMNE   40 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT--TEEEEEEECSCH
T ss_pred             eeceEEEECCCHHHHHHHHHHHH--cCCeEEEEEecH
Confidence            34579999999999999999999  899999999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.01  E-value=0.013  Score=51.47  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.|+|+|+|-+|..+|..|.+  .|++|+|+|++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCcceecCCh
Confidence            369999999999999999999  899999999974

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.72  E-value=0.018  Score=52.00  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |+.+.+|+|||+|-+|.++||.|+...-..+|.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            456779999999999999999999932225899999753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.62  E-value=0.016  Score=52.80  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|-+|.+.|..|++  .|++|+++|+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHH--CCCEEEEEECCc
Confidence            59999999999999999999  899999999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.61  E-value=0.016  Score=52.80  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             cccCcceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975        246 VMGSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK  284 (728)
Q Consensus       246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~  284 (728)
                      +|..+.+|+|||+|-+|.++|+.|+.  .++ ++.++|..
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~--~~~~el~L~D~~   40 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVV   40 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHh--CCCceEEEEEec
Confidence            56678899999999999999999988  443 79999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.07  E-value=0.022  Score=48.96  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=28.5

Q ss_pred             ceEEEeecceechhhHHHhhhh-CCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRR-FPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~-~~G~~VtVIEk~  284 (728)
                      .+++|||||.+|+-.|..|++. ..|.+|+|+++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~   53 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG   53 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccc
Confidence            4799999999999999877652 158899999985

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.84  E-value=0.019  Score=53.38  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=29.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ++|+|||||..|.+.|..|++  .|++|+++.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~--~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVD--NGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH--HCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCEEEEEEec
Confidence            379999999999999999999  89999999764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.82  E-value=0.027  Score=48.39  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=28.4

Q ss_pred             ceEEEeecceechhhHHHhhhhC-CCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRF-PNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~-~G~~VtVIEk~  284 (728)
                      .+++|||||.+|+-.|..|+... .+.+|+|+++.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~   55 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc
Confidence            47999999999999998877631 46789999985

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.78  E-value=0.025  Score=51.25  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=29.3

Q ss_pred             eEEEe-ecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAIL-GAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVI-GAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|| |+|-+|.++|..|++  .|++|+|.+|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~--~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLAT--LGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--TTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            58999 679999999999999  999999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.60  E-value=0.035  Score=49.79  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=29.0

Q ss_pred             ceEEEe--ecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAIL--GAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVI--GAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..++||  |||.+|+.+|-.|++  .|.+|||+++..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~--~G~~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHH--cCCeEEEEecCC
Confidence            356665  999999999999999  999999999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.29  E-value=0.037  Score=49.52  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=30.9

Q ss_pred             cceEEEee-cceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+||| .|.+|.+.|..|.+  .|++|+++|+..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~--~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHH--cCCCcEeccccc
Confidence            34799999 69999999999999  999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.26  E-value=0.03  Score=48.83  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +++|||+|-+|..+|-.|.+  .|++|+|+|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHR--MGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCeEEEecCcH
Confidence            58999999999999999999  899999999974

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.02  E-value=0.041  Score=50.72  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ..+|+|||+|++|+.+|..+.+  -|.+|+++|.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCc
Confidence            4589999999999999999999  89999999975

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.033  Score=49.26  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             cceEEEeecceechhhHHHhhhh--CCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~--~~G~~VtVIEk~~  285 (728)
                      ..+++|||||.+|+-.|..|++.  ..|.+|+++++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            45799999999999999999752  1588999999854

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.59  E-value=0.046  Score=51.02  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||++|+.+|.-...  -|.+|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~--lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHH--cCCEEEEEeccH
Confidence            4589999999999999999988  899999999764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.57  E-value=0.066  Score=48.42  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=29.9

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||-|.+|...|..|++  .|++|.++|+..
T Consensus         2 kIgiIGlG~MG~~~A~~L~~--~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHH--CCCeEEEEeCCc
Confidence            59999999999999999999  999999999853

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.57  E-value=0.053  Score=50.60  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=27.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|+|||.|.+||.+|..|++   |++|+.+|-+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a~---g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSL---QNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHHC---CCcEEEEECCH
Confidence            69999999999999987754   89999999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.48  E-value=0.062  Score=48.02  Aligned_cols=34  Identities=21%  Similarity=0.644  Sum_probs=31.0

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||||-+|+.-|..|.+  .|.+|+||+.+.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~--~GA~VtVvap~~   46 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPDL   46 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence            4579999999999999999999  899999998764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.05  E-value=0.072  Score=48.91  Aligned_cols=34  Identities=15%  Similarity=0.336  Sum_probs=31.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+|.|||-|.+|...|..|++  .|++|.++|+..
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~--~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMND--HGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            3579999999999999999999  999999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.71  E-value=0.078  Score=48.55  Aligned_cols=33  Identities=24%  Similarity=0.540  Sum_probs=30.3

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ++|.|||-|.+|...|.+|++  .|++|.++|+..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~--~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAE--KGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHH--CCCeEEEEECCH
Confidence            369999999999999999999  899999999853

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.68  E-value=0.089  Score=47.60  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .|.|||-|.+|...|.+|++  .|++|.++|+..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~--~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLK--AGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHH--CCCeEEEEECch
Confidence            59999999999999999999  899999999863

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=89.32  E-value=0.14  Score=44.34  Aligned_cols=63  Identities=14%  Similarity=0.136  Sum_probs=45.9

Q ss_pred             hhceeeeecCCceEEeccccccC--------------c----c---cccccccchhhhhhcccccccccccccceeeeee
Q psy16975        539 LAGAYIIPSYGGLVTLGGTQDYG--------------N----A---RLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVG  597 (728)
Q Consensus       539 ~~~~YiiP~~dG~vviGgt~e~~--------------~----~---d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waG  597 (728)
                      +...|+++..+| +++|+.....              +    +   ....+.+..+..++++.+++|.|.++.|.+.+.|
T Consensus        36 d~~~Y~R~e~~g-ll~G~yE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~e~a~~r~P~l~~~gi~~~~NG  114 (119)
T d1pj5a3          36 DQDLYYREHGDR-YGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNG  114 (119)
T ss_dssp             GGTEEEEEETTE-EEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEE
T ss_pred             CCCEEEEEeCCe-EEEeecCCCCcccccccccccCccCCCcccchhhCCCcHHHHHHHHHHHHHhcCCcccccccceeec
Confidence            678899987776 8889765320              0    0   1223445677889999999999999999999988


Q ss_pred             ccccc
Q psy16975        598 LRPYR  602 (728)
Q Consensus       598 lRP~t  602 (728)
                      .-.+|
T Consensus       115 p~sfT  119 (119)
T d1pj5a3         115 IFSFT  119 (119)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            75554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.88  E-value=0.12  Score=46.26  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=29.3

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ...+|.|||||-+|.++||.|+...-.-++.++|..
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            356899999999999999999993223379999965

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=88.80  E-value=0.13  Score=46.78  Aligned_cols=34  Identities=18%  Similarity=0.499  Sum_probs=30.0

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC--cEEEeecc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK  284 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~  284 (728)
                      ++.+|+|||+|-+|.++||.|+.  .|.  ++.++|..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~--~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILG--KSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--cCCCcEEEEEEec
Confidence            35689999999999999999999  665  79999975

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.31  E-value=0.14  Score=43.47  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ...|+|||+|-+|..-|..|++  .|.+|+|++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLE--AGARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccC
Confidence            4589999999999999999999  899999998653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.10  E-value=0.11  Score=46.81  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      +|.|||.|.+|.|.|+.|.+  .|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~--~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHh--cCCCeEEEEEECCh
Confidence            59999999999999999999  665  677777753

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.60  E-value=0.15  Score=46.37  Aligned_cols=35  Identities=17%  Similarity=0.439  Sum_probs=29.7

Q ss_pred             CcceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        249 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       249 ~~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      ...+|.|||+|-+|.++||.|+.  .++  ++.++|...
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~--~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILL--KGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT--TTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCc
Confidence            34589999999999999999999  554  799999753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.97  E-value=0.17  Score=44.78  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=28.0

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|+|||||-+|.+.|+.|+...-..+++++|...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            6999999999999999999932224899999654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.84  E-value=0.18  Score=45.16  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      .+|+|||+|-+|.++||.|+.+.--.++.++|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            3799999999999999999983222378999865

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=86.52  E-value=0.18  Score=45.01  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      .+|+|||+|-+|.++||.|+.  ++.  ++.++|...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~--~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCCcEEEEEEecc
Confidence            369999999999999999998  554  799999653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=86.43  E-value=0.18  Score=45.90  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..+|+|||||-++-+++|.|++  .|.+|+|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~--~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLS--LDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcc--cceEEEeccchH
Confidence            4589999999999999999999  788999998753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=86.42  E-value=0.15  Score=45.42  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=27.7

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .+|.|||+|-+|.++|+.|+.+ .-.++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~-~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CcceEEEEeecc
Confidence            3799999999999999999983 223799998643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.33  E-value=0.17  Score=44.93  Aligned_cols=32  Identities=34%  Similarity=0.503  Sum_probs=27.5

Q ss_pred             eEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~  285 (728)
                      +|+|||+|-+|.+.||.|+.  .+.  ++.++|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~--~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMAL--RQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeccC
Confidence            69999999999999999999  544  799999654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.91  E-value=0.17  Score=44.98  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||.|.+|.+.|..|++  .|++|++.++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~--~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRS--RGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHH--CCCeEEEEcCch
Confidence            69999999999999999999  899999998753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.72  E-value=0.2  Score=44.74  Aligned_cols=31  Identities=42%  Similarity=0.624  Sum_probs=27.4

Q ss_pred             eEEEeec-ceechhhHHHhhhhCCC--CcEEEeecc
Q psy16975        252 KVAILGA-GIIGLSTALELQRRFPN--CDVTVIADK  284 (728)
Q Consensus       252 dVvVIGA-GIiGLStA~~La~~~~G--~~VtVIEk~  284 (728)
                      +|+|||| |-+|.++|+.|+.  .+  -++.++|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~--~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAK--EPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--CTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHh--CCcccccccccch
Confidence            6999996 9999999999998  66  389999975

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.12  E-value=0.23  Score=43.87  Aligned_cols=33  Identities=30%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      +|.|||+|-+|.++|+.|+.+.-..++.++|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            699999999999999999984333479999965

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=84.82  E-value=0.031  Score=54.15  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=45.0

Q ss_pred             cccceeeccccccccccC-----cceEEeecCce---EEEEeecccCccccccCCCCceeeeeeeec
Q psy16975        659 EYNTIFNCTGLGARTLCN-----DMHVIPVRGQT---IRIVHNYGHGGYGVTSAPGSARCAVSVFEQ  717 (728)
Q Consensus       659 ~~~~~~nc~g~~~~~~~~-----d~~~~~~~g~~---~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~  717 (728)
                      ++|.||||||.++..|.+     .+...|..|+.   -.++...||.+.|+.++|..++.+++++.+
T Consensus       194 ~a~~vV~AaG~~s~~l~~~~G~~~~~~~p~~~~~p~~~~~~~~~g~~~~gi~~~p~~g~~i~~~~~~  260 (276)
T d1ryia1         194 WANHVVVASGVWSGMFFKQLGLNNADGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMN  260 (276)
T ss_dssp             EEEEEEECCGGGTHHHHHHTTCCCCSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred             EcCEEEECCCccHHHHHhhcCCCcccccceeccccCCCCEEECCCCCCCeEEECccHHHHHHHHHhc
Confidence            479999999999988744     34444554432   246788999999999999999988877654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.61  E-value=0.26  Score=43.77  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=27.2

Q ss_pred             ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975        251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK  284 (728)
Q Consensus       251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~  284 (728)
                      ++|+|||+|-+|.++||.|+.+.---++.++|..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            3699999999999999999983111369999864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=84.45  E-value=0.28  Score=44.51  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~  284 (728)
                      ..+|+|||+|-++-++++.|.+  .|. +|+|+.|.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~--~g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKN--SGFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHH--TTCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeccc
Confidence            4579999999999999999999  785 79999885

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.31  Score=45.10  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=29.9

Q ss_pred             ceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        251 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       251 ~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      ..|+|+|| |.+|..++.+|.+  +|++|+++.|+.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~--~g~~V~~~~R~~   37 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDS   37 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHH--CcCEEEEEEcCh
Confidence            46999996 9999999999999  899999998863

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.47  E-value=0.3  Score=43.42  Aligned_cols=31  Identities=39%  Similarity=0.453  Sum_probs=26.7

Q ss_pred             eEEEeec-ceechhhHHHhhhhCCCC--cEEEeecc
Q psy16975        252 KVAILGA-GIIGLSTALELQRRFPNC--DVTVIADK  284 (728)
Q Consensus       252 dVvVIGA-GIiGLStA~~La~~~~G~--~VtVIEk~  284 (728)
                      +|+|||| |-+|.++||.|+.  ++.  ++.++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~--~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKN--SPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT--CTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHh--CCccceEEEEecc
Confidence            6999996 9999999999998  554  68899865

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.26  E-value=0.29  Score=49.25  Aligned_cols=37  Identities=30%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             ccCcceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        247 MGSNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       247 ~~~~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      |.+.+.|+|.|| |.+|..++.+|.+  +|++|+++|+..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~--~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKH--EGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH--CcCEEEEEeCCC
Confidence            445678999995 9999999999999  899999998753

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.03  E-value=0.22  Score=47.91  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM  287 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g  287 (728)
                      ...|+|||+|-+|+.+|..|++  .|. +++|+|.+.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLAS--AGVGNLTLLDFDTVS   66 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCBCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--cCCCeEEEECCcccc
Confidence            4589999999999999999999  676 79999988654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=82.34  E-value=0.35  Score=46.67  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=30.4

Q ss_pred             cceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +..|+|+|| |.+|..++.+|.+  .|++|+++.|..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~--~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS--LGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH--TTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCC
Confidence            346999997 9999999999999  899999998854

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=82.34  E-value=0.34  Score=43.49  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      .-.|+|+|+|.+|+.++..+..  .|.+|+++|+..
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhh--hcccccccchHH
Confidence            3469999999999998877766  899999999753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.11  E-value=0.39  Score=42.98  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=27.2

Q ss_pred             cceEEEeecceechhhHHHhhhhCCC-CcEEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~  284 (728)
                      +.+|.|||+|-+|.++|+.|+.  .+ .++.++|..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~--~~l~el~L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIV   36 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            3479999999999999998887  43 378899864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=82.09  E-value=0.36  Score=46.15  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             cceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        250 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       250 ~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +.+|+|+|| |.+|..++.+|.+  .|++|++++|..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~--~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLD--LGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH--TTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH--CCCeEEEEECCC
Confidence            457999998 9999999999999  899999999864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.03  E-value=0.44  Score=42.68  Aligned_cols=33  Identities=27%  Similarity=0.297  Sum_probs=27.8

Q ss_pred             cceEEEeecceechhhHHHhhhhCCCCc-EEEeecc
Q psy16975        250 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK  284 (728)
Q Consensus       250 ~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~  284 (728)
                      ..+|+|||||-+|+=+|..|.+  .|.+ |+++.+.
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r--~GA~~V~vi~rr   78 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALR--CGARRVFLVFRK   78 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSS
T ss_pred             CCEEEEECCChhHHHHHHHHHH--cCCcceeEEEeC
Confidence            3479999999999999999999  6654 8888764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.79  E-value=0.33  Score=43.21  Aligned_cols=32  Identities=16%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975        252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF  285 (728)
Q Consensus       252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~  285 (728)
                      +|.|||+|-+|.+.|..|.+  .+++|+|.++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~--~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQ--TPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--SSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHh--CCCeEEEEcChH
Confidence            69999999999999999999  899999998753