Psyllid ID: psy16981

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
NWQNPNYQGSRHTFSNNGIPTHPTLSICQIKNMIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQGVLLYKGPTYLFGQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEccccccccEEEEEEEcccccccccEEEEEEEccccccccccEEEEEccccccccccccccHHHcccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccEEEEEccccEEEcccEEEEEEEEcccccccccEEEEHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccccEccEEEEEEEccccccccccEEEEccccccccEccccEEccHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHcc
Coil and Loop (DISEMBL)
nwqnpnyqgsrhtfsnngipthptlsICQIKNMIKLFSLKqqkkdgenparpgtqqKKASAAQLRITKAElelptysgsvllhqgvllykgptylfgqesgfnqtntnLISWSVLLHQGvllykgptylfgqesgfnvsirQTQTLFHVCCVFLsdlnelnlpktcttefpnpddllsfkliispdegfyrsgkfvfsfkvgpnypheppkvkcetpvyhpnidlegnVCLNIlredwkpvltiNSIVYGlqylflepnpedplnKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Flexible Loop (DISEMBL)
nwqnpnyqgsrhtfsnngipTHPTLSICQIKNMIKLFSLKQQKKDgenparpgtqqkkaSAAQLRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQGVLLYKGPTYLFGQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Low Complexity Region (SEG)
NWQNPNYQGSRHTFSNNGIPTHPTLSICQIKNMIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQGVLLYKGPTYLFGQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Disordered region (IsUnstruct)
********************THPTLSICQIKNMIKLFS***************************ITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQGVLLYKGPTYLFGQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLE*******************RLFEQNVQKAMRGGYIGSVYFERC**
Disordered Region (DISOPRED)
**********RHTFSNNGIPTHPTLSICQIKNMIKL************************************LPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLL***************************************DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Disordered Region (DISEMBL)
*********SRHTFSNNGIPTHPTLSICQIKNMIKLFSLKQ**********************LRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQGVLLYKGPTYLFGQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Disordered Region (DISPRO)
*W***NYQGSRHTFSNNGIPTHPTLSICQIKNMIKLFSLKQQK*****************AAQLRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQGVLLYK***********************HVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NWQNPNYQGSRHTFSNNGIPTHPTLSICQIKNMIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQGVLLYKGPTYLFGQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
P61082	183	NEDD8-conjugating enzyme	yes	N/A	0.480	0.792	0.877	6e-75
P61081	183	NEDD8-conjugating enzyme	yes	N/A	0.480	0.792	0.877	6e-75
A3KN22	183	NEDD8-conjugating enzyme	yes	N/A	0.480	0.792	0.877	6e-75
Q6P8D9	183	NEDD8-conjugating enzyme	yes	N/A	0.480	0.792	0.870	5e-74
Q6DCZ9	183	NEDD8-conjugating enzyme	N/A	N/A	0.480	0.792	0.863	2e-73
Q9VSF3	181	NEDD8-conjugating enzyme	yes	N/A	0.470	0.784	0.802	3e-68
Q9SDY5	184	NEDD8-conjugating enzyme	yes	N/A	0.483	0.793	0.646	2e-55
Q9ZU75	185	Probable NEDD8-conjugatin	no	N/A	0.483	0.789	0.653	4e-53
Q6C9W0	179	NEDD8-conjugating enzyme	yes	N/A	0.460	0.776	0.609	1e-50
Q54TI6	230	NEDD8-conjugating enzyme	yes	N/A	0.483	0.634	0.513	7e-45

>sp|P61082|UBC12_MOUSE NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1

 Score =  281 bits (718), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 37  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 96

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 97  TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P61081|UBC12_HUMAN NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1

 Score =  281 bits (718), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 37  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 96

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 97  TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A3KN22|UBC12_BOVIN NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1

 Score =  281 bits (718), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 37  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 96

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 97  TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6P8D9|UBC12_XENTR NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1

 Score =  278 bits (710), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 137/147 (93%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC  EF + DDLL+FKL+I PDEGFY+ GKFVFSFKVG  YPH+PPKVKCE
Sbjct: 37  DINELNLPKTCEIEFSDHDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCE 96

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 97  TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase rbx1, but not rbx2, suggests that the rbx1-ube2m complex neddylates specific target proteins, such as cul1, cul2, cul3 and cul4. Involved in cell proliferation.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6DCZ9|UBC12_XENLA NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 136/147 (92%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+ ELNLPKTC  EF + DDLL+FKL+I PDEGFY+ GKFVFSFKVG  YPH+PPKVKCE
Sbjct: 37  DITELNLPKTCEIEFSDHDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCE 96

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 97  TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase rbx1, but not rbx2, suggests that the rbx1-ube2m complex neddylates specific target proteins, such as cul1, cul2, cul3 and cul4. Involved in cell proliferation.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9VSF3|UBC12_DROME NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=2 SV=1

 Score =  258 bits (660), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 131/147 (89%)

Query: 155 SDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKC 214
            D+NELNLP TC T+FP+P+DLL+FKLIISPDEGFYR G+FVF+F+VG NYPHEPPKVKC
Sbjct: 33  KDINELNLPNTCATDFPDPNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKC 92

Query: 215 ETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
            T VYHPNIDL+GNVCLNILREDW PVL INSIVYGLQ+LFLEPNPEDPLNKEAA+VLQ 
Sbjct: 93  ATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQT 152

Query: 275 NRRLFEQNVQKAMRGGYIGSVYFERCL 301
           NRR FE NV+KAMRGG +G  YFE CL
Sbjct: 153 NRRQFENNVKKAMRGGCVGETYFECCL 179

Accepts the ubiquitin-like protein NEDD8 from the Uba3-Ula1 E1 complex and catalyzes its covalent attachment to other proteins.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SDY5|RCE1_ARATH NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 122/147 (82%), Gaps = 1/147 (0%)

Query: 156 DLNELNLPKTCTTEFPN-PDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKC 214
           D++ELNLP +C+  FPN  DDL++F++ I PD+G+Y +G FVF+F+V P YPHE PKVKC
Sbjct: 38  DISELNLPSSCSISFPNGKDDLMNFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKC 97

Query: 215 ETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
           +T VYHPNIDLEGNVCLNILREDWKPVL IN+++YGL +LF EPN EDPLN +AA VL++
Sbjct: 98  KTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRD 157

Query: 275 NRRLFEQNVQKAMRGGYIGSVYFERCL 301
           N +LFE NV++AM GGY+G  +F RC+
Sbjct: 158 NPKLFETNVRRAMTGGYVGQTFFPRCI 184

Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZU75|UB12L_ARATH Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1

 Score =  208 bits (529), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/147 (65%), Positives = 118/147 (80%), Gaps = 1/147 (0%)

Query: 156 DLNELNLPKTCTTEFPN-PDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKC 214
           D++ELNLPK+C   FPN  +DL++F++ I PDEG+Y SG FVFSF+V   YPHE PKVKC
Sbjct: 39  DISELNLPKSCKISFPNGKNDLMNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKC 98

Query: 215 ETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
           +T VYHPNIDLEGNVCLNILREDWKPVL IN+++YGL +LF EPN EDPLN EAA VL++
Sbjct: 99  KTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRD 158

Query: 275 NRRLFEQNVQKAMRGGYIGSVYFERCL 301
           N + FE NV++AM GG +G   F RC+
Sbjct: 159 NPKTFEYNVRRAMMGGQVGQTSFPRCM 185

Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6C9W0|UBC12_YARLI NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=UBC12 PE=3 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 114/146 (78%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           DL+EL+LP T  T FP+ +D+++F+L + PDEGFY+ G+F FSF V PN+PHEPPKVKC 
Sbjct: 32  DLSELSLPSTMKTHFPSAEDIMNFELTVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCL 91

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             VYHPNIDLEGNVCLNILREDWKPVL++N+++ GLQYLFLEPN  DPLNK+AA  +  N
Sbjct: 92  QKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTAN 151

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCL 301
           R  F++NV+ +M GG +    F+  L
Sbjct: 152 REEFKRNVKHSMAGGSVAGERFDCVL 177

Accepts the ubiquitin-like protein NEDD8/RUB1 from the UBA3-ULA1 E1 complex and catalyzes its covalent attachment to other proteins.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54TI6|UBC12_DICDI NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1

 Score =  181 bits (458), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 111/146 (76%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D++E+ +P  C   F + +D+L+F L I+P +G Y+S  F F+  +   YP++PPKV C+
Sbjct: 85  DIDEMEVPTGCAVSFKDTNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCD 144

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEG+VCLNILR+DW PVL I ++++GL  LFLEPNP+DPLNK+AA+++ +N
Sbjct: 145 TLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDN 204

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCL 301
           ++ FE NV++++RGGYI +  F + L
Sbjct: 205 KKTFEANVRQSLRGGYISNRQFPKLL 230

Accepts the ubiquitin-like protein nedd8 from the uba3-nae1 E1 complex and catalyzes its covalent attachment to other proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
241696777	294	ubiquitin protein ligase, putative [Ixod	0.890	0.914	0.583	3e-81
307214126	181	NEDD8-conjugating enzyme Ubc12 [Harpegna	0.433	0.723	0.911	1e-75
307186403	181	NEDD8-conjugating enzyme Ubc12 [Camponot	0.473	0.790	0.911	1e-75
357625677	183	ubiquitin-conjugating enzyme E2M [Danaus	0.480	0.792	0.897	2e-75
242023913	182	NEDD8-conjugating enzyme Ubc12, putative	0.476	0.791	0.904	2e-75
48102172	181	PREDICTED: NEDD8-conjugating enzyme Ubc1	0.433	0.723	0.904	3e-75
91078254	182	PREDICTED: similar to ubiquitin-conjugat	0.476	0.791	0.897	3e-75
322782480	214	hypothetical protein SINV_02930 [Solenop	0.433	0.612	0.904	4e-75
114052396	183	ubiquitin-conjugating enzyme E2M [Bombyx	0.480	0.792	0.897	9e-75
383856671	181	PREDICTED: NEDD8-conjugating enzyme Ubc1	0.433	0.723	0.904	2e-74

>gi|241696777|ref|XP_002413097.1| ubiquitin protein ligase, putative [Ixodes scapularis] gi|215506911|gb|EEC16405.1| ubiquitin protein ligase, putative [Ixodes scapularis]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/295 (58%), Positives = 198/295 (67%), Gaps = 26/295 (8%)

Query: 33  MIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITKA--ELELPT------------YSG 78
           MIKLFSLKQQ+KDGE   +  + QK+ASAAQLRITK   EL LP              S 
Sbjct: 1   MIKLFSLKQQQKDGEATGK-ASNQKRASAAQLRITKDINELNLPKTCQMEFPDPDDLLSF 59

Query: 79  SVLLHQGVLLYKGPTYLFGQESGFN------QTNTNLISWSVLLHQGVLLYKGPTYLFG- 131
            +++      Y+G  ++F      N      + N   I  S    +   +      LF  
Sbjct: 60  KLVICPDEGFYRGGRFVFSFRVSANYPHEPPKPNNCGIGVSGAGARRHPVQNTMIKLFSL 119

Query: 132 ---QESGFNVSIRQTQTLFHVCCVFLS-DLNELNLPKTCTTEFPNPDDLLSFKLIISPDE 187
              Q+ G        Q       + ++ D+NELNLPKTC  EFP+PDDLLSFKL+I PDE
Sbjct: 120 KQQQKDGEATGKASNQKRASAAQLRITKDINELNLPKTCQMEFPDPDDLLSFKLVICPDE 179

Query: 188 GFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSI 247
           GFYR G+FVFSF+V  NYPHEPPKVKCET VYHPNIDL+GNVCLNILREDWKPVLTINSI
Sbjct: 180 GFYRGGRFVFSFRVSANYPHEPPKVKCETMVYHPNIDLDGNVCLNILREDWKPVLTINSI 239

Query: 248 VYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK 302
           VYGLQYLFLEPNPEDPLNK+AAEVLQNNRRLFEQNV+KAM GGYIG+ YFERCLK
Sbjct: 240 VYGLQYLFLEPNPEDPLNKDAAEVLQNNRRLFEQNVKKAMLGGYIGATYFERCLK 294

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214126|gb|EFN89290.1| NEDD8-conjugating enzyme Ubc12 [Harpegnathos saltator]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/147 (91%), Positives = 140/147 (95%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC TEFP+PDDLLSFKLII PDEGFYR G+FVFSFKVGPNYPHEPPKVKCE
Sbjct: 35  DINELNLPKTCGTEFPDPDDLLSFKLIICPDEGFYRGGRFVFSFKVGPNYPHEPPKVKCE 94

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDL+GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNK+AAEVLQNN
Sbjct: 95  TQVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKDAAEVLQNN 154

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RR FEQNV KAMRGGY+GS YFERCLK
Sbjct: 155 RRAFEQNVSKAMRGGYVGSYYFERCLK 181

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186403|gb|EFN72037.1| NEDD8-conjugating enzyme Ubc12 [Camponotus floridanus]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/147 (91%), Positives = 140/147 (95%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC TEFP+PDDLLSFKLII PDEGFYR G+FVFSFKVGPNYPHEPPKVKCE
Sbjct: 35  DINELNLPKTCGTEFPDPDDLLSFKLIICPDEGFYRGGRFVFSFKVGPNYPHEPPKVKCE 94

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDL+GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNK+AAEVLQNN
Sbjct: 95  TQVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKDAAEVLQNN 154

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RR FEQNV KAMRGGY+GS YFERCLK
Sbjct: 155 RRAFEQNVAKAMRGGYVGSYYFERCLK 181

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625677|gb|EHJ76040.1| ubiquitin-conjugating enzyme E2M [Danaus plexippus]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 142/147 (96%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           DLNELNLPKTC+TEFP+PDDLL+FKLII PDEGFYR G+FVFSFKVGPNYPHEPPKVKCE
Sbjct: 37  DLNELNLPKTCSTEFPDPDDLLNFKLIICPDEGFYRGGRFVFSFKVGPNYPHEPPKVKCE 96

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLT+NSIVYGLQYLFLEPNPEDPLNKEAA+ LQ+N
Sbjct: 97  TAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 156

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQ+VQ+AMRGGY+GS YFERCLK
Sbjct: 157 RRLFEQHVQRAMRGGYVGSSYFERCLK 183

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023913|ref|XP_002432375.1| NEDD8-conjugating enzyme Ubc12, putative [Pediculus humanus corporis] gi|212517798|gb|EEB19637.1| NEDD8-conjugating enzyme Ubc12, putative [Pediculus humanus corporis]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 141/147 (95%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC+TEFP+PDDLLSFKLII PDEGFYR GKF FSFKVG NYPHEPPKVKCE
Sbjct: 36  DINELNLPKTCSTEFPDPDDLLSFKLIICPDEGFYRGGKFSFSFKVGMNYPHEPPKVKCE 95

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDL+GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 96  TTVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 155

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFE NVQKAMRGGY+GS++F+RCLK
Sbjct: 156 RRLFEANVQKAMRGGYVGSIFFDRCLK 182

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48102172|ref|XP_392749.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Apis mellifera] gi|340708549|ref|XP_003392886.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like isoform 1 [Bombus terrestris] gi|350412906|ref|XP_003489810.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Bombus impatiens] gi|380026699|ref|XP_003697082.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Apis florea]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 140/147 (95%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC TEFP+PDDLLSFKLII PDEGFYR G+FVFSFKVGPNYPHEPPKVKCE
Sbjct: 35  DINELNLPKTCGTEFPDPDDLLSFKLIICPDEGFYRGGRFVFSFKVGPNYPHEPPKVKCE 94

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDL+GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNK+AAEVLQNN
Sbjct: 95  TQVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKDAAEVLQNN 154

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RR FEQNV KAMRGGY+G+ YFERCLK
Sbjct: 155 RRAFEQNVAKAMRGGYVGAFYFERCLK 181

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078254|ref|XP_970778.1| PREDICTED: similar to ubiquitin-conjugating enzyme m [Tribolium castaneum] gi|270003940|gb|EFA00388.1| hypothetical protein TcasGA2_TC003234 [Tribolium castaneum]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 141/147 (95%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTCTTEFP+PDDLLSFKL+I PDEGFY++G+FVFSFKVGPNYPHEPPKVKCE
Sbjct: 36  DINELNLPKTCTTEFPDPDDLLSFKLVICPDEGFYKTGRFVFSFKVGPNYPHEPPKVKCE 95

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNID +GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL  N
Sbjct: 96  TQVYHPNIDQQGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLTTN 155

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQKAMRGGY+GS YF+RCLK
Sbjct: 156 RRLFEQNVQKAMRGGYVGSTYFDRCLK 182

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322782480|gb|EFZ10429.1| hypothetical protein SINV_02930 [Solenopsis invicta]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 140/147 (95%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC TEFP+PDDLLSFKLII PDEGFY+ G+FVFSFKVGPNYPHEPPKVKCE
Sbjct: 68  DINELNLPKTCGTEFPDPDDLLSFKLIICPDEGFYKGGRFVFSFKVGPNYPHEPPKVKCE 127

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDL+GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNK+AAEVLQNN
Sbjct: 128 TQVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKDAAEVLQNN 187

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RR FEQNV KAMRGGY+GS YFERCLK
Sbjct: 188 RRAFEQNVAKAMRGGYVGSYYFERCLK 214

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052396|ref|NP_001040241.1| ubiquitin-conjugating enzyme E2M [Bombyx mori] gi|87248485|gb|ABD36295.1| ubiquitin-conjugating enzyme E2M [Bombyx mori]

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 141/147 (95%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           DLNELNLPKTC TEFP+PDDLL+FKLII PDEGFYR GKFVFSFKVGPNYPHEPPKVKCE
Sbjct: 37  DLNELNLPKTCNTEFPDPDDLLNFKLIICPDEGFYRGGKFVFSFKVGPNYPHEPPKVKCE 96

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLT+NSIVYGLQYLFLEPNPEDPLNKEAA+ LQ+N
Sbjct: 97  TAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 156

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQ+VQ+AMRGGY+G+ YFERCLK
Sbjct: 157 RRLFEQHVQRAMRGGYVGTSYFERCLK 183

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856671|ref|XP_003703831.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Megachile rotundata]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 139/147 (94%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC TEFP+PDDLLSFKLII PDEGFYR G+FVFSFKVGPNYPHEPPKVKCE
Sbjct: 35  DINELNLPKTCGTEFPDPDDLLSFKLIICPDEGFYRGGRFVFSFKVGPNYPHEPPKVKCE 94

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDL+GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNK+AAEVLQNN
Sbjct: 95  TQVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKDAAEVLQNN 154

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RR FEQNV KAMRGG +GS YFERCLK
Sbjct: 155 RRAFEQNVAKAMRGGCVGSFYFERCLK 181

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
UNIPROTKB|A3KN22	183	UBE2M "NEDD8-conjugating enzym	0.486	0.803	0.877	1.4e-80
UNIPROTKB|P61081	183	UBE2M "NEDD8-conjugating enzym	0.486	0.803	0.877	1.4e-80
MGI|MGI:108278	183	Ube2m "ubiquitin-conjugating e	0.486	0.803	0.877	1.4e-80
RGD|1307614	183	Ube2m "ubiquitin-conjugating e	0.486	0.803	0.877	1.4e-80
UNIPROTKB|E2RIU5	185	UBE2M "Uncharacterized protein	0.486	0.794	0.877	3.6e-80
UNIPROTKB|Q6P8D9	183	ube2m "NEDD8-conjugating enzym	0.486	0.803	0.870	9.5e-80
UNIPROTKB|Q6DCZ9	183	ube2m "NEDD8-conjugating enzym	0.486	0.803	0.863	2.5e-79
FB|FBgn0035853	181	Ubc12 "Ubiquitin conjugating e	0.483	0.806	0.808	5.2e-77
TAIR|locus:2115305	184	RCE1 "RUB1 conjugating enzyme	0.483	0.793	0.646	2.9e-60
UNIPROTKB|G4MVU5	184	MGG_01807 "NEDD8-conjugating e	0.486	0.798	0.632	8.8e-57

UNIPROTKB|A3KN22 UBE2M "NEDD8-conjugating enzyme Ubc12" [Bos taurus (taxid:9913)]

 Score = 718 (257.8 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct:    37 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 96

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct:    97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct:   157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P61081 UBE2M "NEDD8-conjugating enzyme Ubc12" [Homo sapiens (taxid:9606)]

 Score = 718 (257.8 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct:    37 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 96

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct:    97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct:   157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

GO:0005524 "ATP binding" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP;TAS

GO:0006464 "cellular protein modification process" evidence=IMP;TAS

GO:0045116 "protein neddylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0016567 "protein ubiquitination" evidence=IMP;TAS

MGI|MGI:108278 Ube2m "ubiquitin-conjugating enzyme E2M" [Mus musculus (taxid:10090)]

 Score = 718 (257.8 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct:    37 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 96

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct:    97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct:   157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISO

GO:0019788 "NEDD8 ligase activity" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

RGD|1307614 Ube2m "ubiquitin-conjugating enzyme E2M" [Rattus norvegicus (taxid:10116)]

 Score = 718 (257.8 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct:    37 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 96

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct:    97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct:   157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IEA;ISO

GO:0019788 "NEDD8 ligase activity" evidence=IEA;ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IMP

GO:0045116 "protein neddylation" evidence=ISO

UNIPROTKB|E2RIU5 UBE2M "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 718 (257.8 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct:    39 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 98

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct:    99 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 158

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct:   159 RRLFEQNVQRSMRGGYIGSTYFERCLK 185

GO:0019788 "NEDD8 ligase activity" evidence=IEA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q6P8D9 ube2m "NEDD8-conjugating enzyme Ubc12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 710 (255.0 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
 Identities = 128/147 (87%), Positives = 137/147 (93%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+NELNLPKTC  EF + DDLL+FKL+I PDEGFY+ GKFVFSFKVG  YPH+PPKVKCE
Sbjct:    37 DINELNLPKTCEIEFSDHDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCE 96

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct:    97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct:   157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

UNIPROTKB|Q6DCZ9 ube2m "NEDD8-conjugating enzyme Ubc12" [Xenopus laevis (taxid:8355)]

 Score = 704 (252.9 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
 Identities = 127/147 (86%), Positives = 136/147 (92%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+ ELNLPKTC  EF + DDLL+FKL+I PDEGFY+ GKFVFSFKVG  YPH+PPKVKCE
Sbjct:    37 DITELNLPKTCEIEFSDHDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCE 96

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct:    97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct:   157 RRLFEQNVQRSMRGGYIGSTYFERCLK 183

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

FB|FBgn0035853 Ubc12 "Ubiquitin conjugating enzyme 12" [Drosophila melanogaster (taxid:7227)]

 Score = 664 (238.8 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
 Identities = 118/146 (80%), Positives = 131/146 (89%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             D+NELNLP TC T+FP+P+DLL+FKLIISPDEGFYR G+FVF+F+VG NYPHEPPKVKC 
Sbjct:    34 DINELNLPNTCATDFPDPNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCA 93

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
             T VYHPNIDL+GNVCLNILREDW PVL INSIVYGLQ+LFLEPNPEDPLNKEAA+VLQ N
Sbjct:    94 TQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTN 153

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCL 301
             RR FE NV+KAMRGG +G  YFE CL
Sbjct:   154 RRQFENNVKKAMRGGCVGETYFECCL 179

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0045116 "protein neddylation" evidence=IDA

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

TAIR|locus:2115305 RCE1 "RUB1 conjugating enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 95/147 (64%), Positives = 122/147 (82%)

Query:   156 DLNELNLPKTCTTEFPN-PDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKC 214
             D++ELNLP +C+  FPN  DDL++F++ I PD+G+Y +G FVF+F+V P YPHE PKVKC
Sbjct:    38 DISELNLPSSCSISFPNGKDDLMNFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKC 97

Query:   215 ETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
             +T VYHPNIDLEGNVCLNILREDWKPVL IN+++YGL +LF EPN EDPLN +AA VL++
Sbjct:    98 KTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRD 157

Query:   275 NRRLFEQNVQKAMRGGYIGSVYFERCL 301
             N +LFE NV++AM GGY+G  +F RC+
Sbjct:   158 NPKLFETNVRRAMTGGYVGQTFFPRCI 184

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0019787 "small conjugating protein ligase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009790 "embryo development" evidence=IGI

GO:0019788 "NEDD8 ligase activity" evidence=TAS

GO:0006301 "postreplication repair" evidence=RCA

UNIPROTKB|G4MVU5 MGG_01807 "NEDD8-conjugating enzyme UBC12" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 528 (190.9 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 93/147 (63%), Positives = 117/147 (79%)

Query:   156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
             DL+EL L  T  TEFP+PDD+L+F+LII PDEG YR G+F F FK+  N+PHEPPKV CE
Sbjct:    38 DLSELYLGTTMKTEFPDPDDILNFRLIIEPDEGMYRGGRFTFDFKINQNFPHEPPKVLCE 97

Query:   216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
               +YHPNIDLEG VCLNILREDWKPVL +N+++ GLQ+LFLEPN  DPLNK+AAE L++N
Sbjct:    98 QKIYHPNIDLEGKVCLNILREDWKPVLNLNAVIVGLQFLFLEPNASDPLNKDAAEDLRSN 157

Query:   276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
             R  F++NV+ +M GG +  + F+R LK
Sbjct:   158 REGFKRNVRTSMGGGAVKGISFDRVLK 184

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VSF3	UBC12_DROME	6, ., 3, ., 2, ., -	0.8027	0.4701	0.7845	yes	N/A
Q9SDY5	RCE1_ARATH	6, ., 3, ., 2, ., -	0.6462	0.4834	0.7934	yes	N/A
Q6FVQ8	UBC12_CANGA	6, ., 3, ., 2, ., -	0.5034	0.4735	0.7647	yes	N/A
P61082	UBC12_MOUSE	6, ., 3, ., 2, ., -	0.8775	0.4801	0.7923	yes	N/A
P61081	UBC12_HUMAN	6, ., 3, ., 2, ., -	0.8775	0.4801	0.7923	yes	N/A
Q6P8D9	UBC12_XENTR	6, ., 3, ., 2, ., -	0.8707	0.4801	0.7923	yes	N/A
Q54TI6	UBC12_DICDI	6, ., 3, ., 2, ., -	0.5136	0.4834	0.6347	yes	N/A
O74549	UBC12_SCHPO	6, ., 3, ., 2, ., -	0.5342	0.4834	0.8248	yes	N/A
Q6C9W0	UBC12_YARLI	6, ., 3, ., 2, ., -	0.6095	0.4602	0.7765	yes	N/A
A3KN22	UBC12_BOVIN	6, ., 3, ., 2, ., -	0.8775	0.4801	0.7923	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-50
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	9e-45
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	1e-36
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	3e-36
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	2e-25
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	2e-22

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  163 bits (415), Expect = 1e-50
 Identities = 57/135 (42%), Positives = 82/135 (60%), Gaps = 3/135 (2%)

Query: 156 DLNEL-NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           +L EL   P    + FP  D+L  ++  II P+   Y  G F    +   +YP +PPKVK
Sbjct: 5   ELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVK 64

Query: 214 CETPVYHPNIDLEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
             T +YHPN+D  G +CL+IL+ E+W P LTI  ++  +Q L  EPNPEDPLN EAA++ 
Sbjct: 65  FTTKIYHPNVDPSGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNAEAAKLY 124

Query: 273 QNNRRLFEQNVQKAM 287
           + NR  FE+ V++ +
Sbjct: 125 RKNREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  148 bits (377), Expect = 9e-45
 Identities = 46/133 (34%), Positives = 79/133 (59%), Gaps = 1/133 (0%)

Query: 159 ELNLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP 217
           + + P   +    + D+L  ++  I  P +  Y  G F  + +   +YP +PPKV+  T 
Sbjct: 18  QKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK 77

Query: 218 VYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRR 277
           ++HPN+D  GNVCL+IL++ W PV T+ +I+  LQ L L PNP+ PLN EAA + + ++ 
Sbjct: 78  IFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKE 137

Query: 278 LFEQNVQKAMRGG 290
            +E+ V++ ++  
Sbjct: 138 EYEKKVREWVKKY 150

Length = 153

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  127 bits (321), Expect = 1e-36
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           L DL + + P   + E P  ++LL +   I  P +  Y  G F    +   +YP +PPKV
Sbjct: 8   LKDLKK-DPPSGISAE-PVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKV 65

Query: 213 KCETPVYHPNIDLEGNVCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           +  T +YHPN+D  G +CL+IL+   W P  T+ +++  LQ L  EPNP DPLN EAA++
Sbjct: 66  RFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKL 125

Query: 272 LQNNRRLFEQNVQK 285
            + NR  F++  ++
Sbjct: 126 YKENREEFKKKARE 139

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  126 bits (319), Expect = 3e-36
 Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 174 DDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLN 232
           ++LL +   I+ P    Y  G F  + +   +YP +PPKVK  T +YHPN+D  G +CL+
Sbjct: 25  ENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVKFITKIYHPNVDSSGEICLD 84

Query: 233 ILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
           IL+ E W P LT+ +++  LQ L  EPNP+ PLN +AAE+ + NR  F++  +
Sbjct: 85  ILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLNADAAELYKKNREEFKKKAR 137

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 99.1 bits (246), Expect = 2e-25
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 2/124 (1%)

Query: 163 PKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P  C+   P+ ++L  +   II P +  Y  G F  S    P+YP +PPKV+  T +YHP
Sbjct: 18  PSNCSAG-PSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHP 76

Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 281
           NI+  G++CL+ILR+ W P LT++ ++  +  L  +PNP+DPL  E A V + NR  +E 
Sbjct: 77  NINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEA 136

Query: 282 NVQK 285
             ++
Sbjct: 137 TARE 140

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 1/107 (0%)

Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
           P+P +   FK+++  PD   Y  G +     +   YP EPPKV+  T +YHPNID  G +
Sbjct: 26  PDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRI 85

Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
           CL+IL++ W P L I +++  +Q L   P P+DPL+   A+  +NNR
Sbjct: 86  CLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNR 132

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG0420|consensus	184		100.0
KOG0417|consensus	148		100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419|consensus	152		100.0
KOG0425|consensus	171		100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0426|consensus	165		100.0
KOG0421|consensus	175		100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0418|consensus	200		100.0
KOG0424|consensus	158		100.0
KOG0422|consensus	153		100.0
KOG0416|consensus	189		99.97
KOG0423|consensus	223		99.96
KOG0427|consensus	161		99.91
KOG0894|consensus	244		99.85
KOG0429|consensus	258		99.82
KOG0428|consensus	314		99.74
KOG0895|consensus	1101		99.59
KOG0895|consensus	1101		99.44
KOG0896|consensus	138		99.2
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.23
KOG0897|consensus	122		97.99
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.88
KOG0420|consensus	184		97.76
KOG2391|consensus	365		96.46
smart00591	107	RWD domain in RING finger and WD repeat containing	91.9
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	91.79
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	91.44
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	90.49
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	88.86

>KOG0420|consensus

Probab=100.00  E-value=4.2e-54  Score=372.35  Aligned_cols=181  Identities=66%  Similarity=1.169  Sum_probs=171.5

Q ss_pred             HHhhhhhccccccCCCCCCCCCcccccchhhhhhhhccccCCCCCCccccccceecccCCcccccccccccccCCcccch
Q psy16981         33 MIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISW  112 (302)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~n~~~i~~  112 (302)
                      |||||++|+++++++..... +.++++|||+||+++                                            
T Consensus         1 M~~L~~~~~k~~~~~~~~~~-~~~~~~s~a~lrl~~--------------------------------------------   35 (184)
T KOG0420|consen    1 MIKLFKLKKKKREEEQSRYT-STRKKVSAALLRLKK--------------------------------------------   35 (184)
T ss_pred             CccHHHHHHhhhhhcccccc-cccccccHHHHHHHh--------------------------------------------
Confidence            89999999888766654433 788999999999999                                            


Q ss_pred             hhhhhhccccccCCceeccCCccceeccccccchHHHHHHHHHHHhccCCCCCeEEeccC-CCCceE--EEEEEeCCCcc
Q psy16981        113 SVLLHQGVLLYKGPTYLFGQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPN-PDDLLS--FKLIISPDEGF  189 (302)
Q Consensus       113 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rl~kEL~eL~lP~~~~~~~p~-~ddl~~--W~v~IgP~~tp  189 (302)
                                                                 |+.+|++|++|...+|+ .+++..  ++++|.|++|.
T Consensus        36 -------------------------------------------di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGy   72 (184)
T KOG0420|consen   36 -------------------------------------------DILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGY   72 (184)
T ss_pred             -------------------------------------------hhhhccCCCccccccccCCcccccceEEEEEccCcce
Confidence                                                       99999999999988887 667666  99999999999


Q ss_pred             cCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHH
Q psy16981        190 YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA  269 (302)
Q Consensus       190 YeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA  269 (302)
                      |+||.|.|.+.+|+.||++||+|+|+|+|||||||.+|+|||+|||++|+|+++|.+|+.+|++||.+|+++||||.|||
T Consensus        73 Y~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA  152 (184)
T KOG0420|consen   73 YQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAA  152 (184)
T ss_pred             ecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCHHHHHHHHHHHHHccCCCCccccccc
Q psy16981        270 EVLQNNRRLFEQNVQKAMRGGYIGSVYFERCL  301 (302)
Q Consensus       270 ~~~~~nr~~F~~~vr~~~~~~~v~~~~f~~~~  301 (302)
                      +++++|++.|+.+||++|.||+|+++.||+||
T Consensus       153 ~~l~~n~e~F~~~Vr~~m~gg~v~~~~f~~~~  184 (184)
T KOG0420|consen  153 AVLKSNREGFENNVRRAMSGGCVGQTSFDRCM  184 (184)
T ss_pred             HHHHhCHHHHHHHHHHHHhcCccCceeccccC
Confidence            99999999999999999999999999999997

>KOG0417|consensus

Probab=100.00  E-value=1.4e-45  Score=313.76  Aligned_cols=143  Identities=34%  Similarity=0.715  Sum_probs=136.6

Q ss_pred             HHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        150 CCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       150 ~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      .+||.||+++|  ++|++|.. .|+++|+++|+++| ||.+||||||+|++.|.||++||++||+|+|.|+||||||+..
T Consensus         3 ~~RI~kE~~~l~~dp~~~~~~-~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~   81 (148)
T KOG0417|consen    3 SKRIIKELQDLLRDPPPGCSA-GPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN   81 (148)
T ss_pred             HHHHHHHHHHHhcCCCCCCcc-CCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence            34999999988  67899975 58899999999999 9999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       227 G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      |+||+|||++.|+|+++|.+||++|++||.+||++||++.++|.+|+.|+.+|++.||+|+++++.+
T Consensus        82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~  148 (148)
T KOG0417|consen   82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG  148 (148)
T ss_pred             ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999988653

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-45  Score=315.54  Aligned_cols=143  Identities=35%  Similarity=0.702  Sum_probs=135.3

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCC-CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPD-DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~d-dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      +.+||++|++.|  ++|.++. +.|.++ |+++|+++| ||++||||||+|++.|.||++||++||+|+|.|+|||||||
T Consensus         6 a~~RL~kE~~~l~~~~~~~~~-a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~   84 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPGIS-AGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD   84 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCceE-EEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC
Confidence            789999999999  4567776 456655 999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      .+|+||||||+++|+|+++|.+||++|++||.+||+++|+|.|||++|++|+++|.++||++++++.+
T Consensus        85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          85 PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999998764

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=5e-42  Score=296.41  Aligned_cols=145  Identities=31%  Similarity=0.609  Sum_probs=137.7

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      ..+||++|+++|  +++.++. +.|.++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~-~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~   81 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIK-AEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK   81 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeE-EEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence            568999999999  4677776 678889999999999 999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        226 EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       226 ~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      +|.||+++|+++|+|++||.+||++|++||.+|++++|+|.+||++|++|+++|+++|++++++++.++
T Consensus        82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~  150 (152)
T PTZ00390         82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHN  150 (152)
T ss_pred             CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999887654

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=2.6e-41  Score=290.35  Aligned_cols=141  Identities=33%  Similarity=0.714  Sum_probs=133.8

Q ss_pred             HHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        150 CCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       150 ~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      .+||++|+++|  +++.++. +.|+++|+++|+++| ||++|||+||.|+|.|.||++||++||+|+|.|+||||||+.+
T Consensus         3 ~~Rl~kE~~~l~~~~~~~~~-~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~   81 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSNCS-AGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN   81 (147)
T ss_pred             HHHHHHHHHHHHhCCCCCeE-EEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence            57999999999  4677775 568889999999998 9999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       227 G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      |.||+++|+++|+|+++|.+||.+|++||.+|++++|+|.+||++|.+|+++|+++|++++++++
T Consensus        82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999998754

>KOG0419|consensus

Probab=100.00  E-value=6.3e-41  Score=279.59  Aligned_cols=144  Identities=27%  Similarity=0.660  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++|+++|  ++|.|++ +-|.++|++.|.++| ||.+|||+||+|++.|.|+++||.+||.|+|.++.||||||
T Consensus         4 pArrrLmrDfkrlqedpp~gis-a~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvy   82 (152)
T KOG0419|consen    4 PARRRLMRDFKRLQEDPPAGIS-AAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVY   82 (152)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcc-CCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcC
Confidence            4678999999999  4677775 689999999999988 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      .+|.+|||||...|+|.+++.+||.+||+||.+||+++|+|.|||.+|++|+++|.++|++.+.++-+
T Consensus        83 a~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~  150 (152)
T KOG0419|consen   83 ADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWS  150 (152)
T ss_pred             CCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999887654

>KOG0425|consensus

Probab=100.00  E-value=8.3e-38  Score=267.47  Aligned_cols=143  Identities=27%  Similarity=0.591  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +..-|.++|++|  ++..+......++.|++.|.+.| ||++|+|+||.|+-.+.||.+||.+||+++|.+++||||||+
T Consensus         6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~   85 (171)
T KOG0425|consen    6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE   85 (171)
T ss_pred             hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence            334456677777  35567776777888999999988 999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        226 EGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       226 ~G~VCL~iL~-------------e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      +|+||++||.             |.|.|+.|+++||++|.+||.+||.++|+|-+||..|++|+++|.++|+++++++.
T Consensus        86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~  164 (171)
T KOG0425|consen   86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ  164 (171)
T ss_pred             CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            9999999996             46999999999999999999999999999999999999999999999999998764

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=2.3e-37  Score=261.52  Aligned_cols=135  Identities=43%  Similarity=0.807  Sum_probs=121.3

Q ss_pred             HHHHHHhcc--CCCCCeEEeccCCC-CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCC
Q psy16981        152 VFLSDLNEL--NLPKTCTTEFPNPD-DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG  227 (302)
Q Consensus       152 Rl~kEL~eL--~lP~~~~~~~p~~d-dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G  227 (302)
                      ||++|+++|  +.+.++.. .+.++ |+++|+++| ||++|||+||.|+|.|.||++||++||+|+|.|+||||||+.+|
T Consensus         1 Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G   79 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISV-QPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG   79 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEE-EEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred             CHHHHHHHHhhCCCCCEEE-EECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence            789999999  57888875 45544 999999999 89999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCC-CCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q psy16981        228 NVCLNILRE-DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAM  287 (302)
Q Consensus       228 ~VCL~iL~e-~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~  287 (302)
                      .||+++|.. .|+|+++|.+||.+|++||.+|+.++|+|.+||++|++|+++|+++||+|.
T Consensus        80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            999999985 599999999999999999999999999999999999999999999999973

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=3.3e-36  Score=255.03  Aligned_cols=136  Identities=35%  Similarity=0.707  Sum_probs=128.1

Q ss_pred             HHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCC
Q psy16981        151 CVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG  227 (302)
Q Consensus       151 ~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G  227 (302)
                      +||++|++++  +.+.++. +.|+++|+++|+++| ||++|+|+||.|+|.|.||++||++||+|+|.+++|||||+.+|
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~-v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G   80 (141)
T cd00195           2 KRLQKELKDLKKDPPSGIS-AEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG   80 (141)
T ss_pred             chHHHHHHHHHhCCCCCeE-EEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence            6899999998  3566774 578888999999999 88899999999999999999999999999999999999999999


Q ss_pred             cEEeccCCCC-CCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q psy16981        228 NVCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAM  287 (302)
Q Consensus       228 ~VCL~iL~e~-W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~  287 (302)
                      .||+++|..+ |+|+++|.+||.+|+++|.+|+.++|+|.+||.+|++|+++|.++|++++
T Consensus        81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            9999999977 99999999999999999999999999999999999999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0426|consensus

Probab=100.00  E-value=4.2e-36  Score=250.99  Aligned_cols=144  Identities=26%  Similarity=0.553  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+++||++|+++|  +.|.|+...--++||++.|.+.| ||++|+|+||+|.-++.||.+||.+||+++|...+|||||
T Consensus         3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi   82 (165)
T KOG0426|consen    3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI   82 (165)
T ss_pred             hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence            36889999999999  67888876555699999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHcc
Q psy16981        224 DLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGG  290 (302)
Q Consensus       224 d~~G~VCL~iL~-------------e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~  290 (302)
                      +.+|+||++||.             |.|+|+.+++.||+++.+||.+||.++.+|.+|+.++++||++|++.|+..+++.
T Consensus        83 y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt  162 (165)
T KOG0426|consen   83 YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT  162 (165)
T ss_pred             cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            999999999996             5799999999999999999999999999999999999999999999999998764

>KOG0421|consensus

Probab=100.00  E-value=3.8e-36  Score=254.26  Aligned_cols=140  Identities=34%  Similarity=0.649  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      ...+||+.||..|  .-.++++ +||++||++.|.++| ||.+|+|+|-.|++.+.||.+||+.||+|+|+|++||||||
T Consensus        29 ~V~KRLq~ELm~Lmms~~~gIS-AFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD  107 (175)
T KOG0421|consen   29 SVTKRLQSELMGLMMSNTPGIS-AFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD  107 (175)
T ss_pred             hHHHHHHHHHHHHHhcCCCCcc-cCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence            4567999999888  5667775 799999999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHc
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRG  289 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~  289 (302)
                      ..|+||||||.+.|+..+++++||++||+||-+||.++|+|..||+++. |.++|++.+.++.++
T Consensus       108 ~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  108 LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE  171 (175)
T ss_pred             ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999998 999999999887653

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=2.1e-35  Score=251.17  Aligned_cols=139  Identities=36%  Similarity=0.733  Sum_probs=129.8

Q ss_pred             HHHHHHHhcc--CCCCCeEEeccCCC-CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        151 CVFLSDLNEL--NLPKTCTTEFPNPD-DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       151 ~Rl~kEL~eL--~lP~~~~~~~p~~d-dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      +||++|++++  +++.++. +.|.++ |+++|+++| ||++|+|+||.|+|.|.||++||++||+|+|.++++|||||++
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~-v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~   79 (145)
T smart00212        1 KRLLKELKELLKDPPPGIS-AYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS   79 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeE-EEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence            4788999998  4566665 466654 999999988 8999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHcc
Q psy16981        227 GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGG  290 (302)
Q Consensus       227 G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~  290 (302)
                      |.||+++|. ++|+|+++|.+||.+|+++|.+|+.++|+|.|||.+|++|++.|+++|++++.++
T Consensus        80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~  144 (145)
T smart00212       80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKY  144 (145)
T ss_pred             CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999998 8999999999999999999999999999999999999999999999999999876

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0418|consensus

Probab=100.00  E-value=3.9e-35  Score=257.52  Aligned_cols=142  Identities=29%  Similarity=0.505  Sum_probs=130.1

Q ss_pred             HHHHHHHHHhcc-CCC----CCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccc
Q psy16981        149 VCCVFLSDLNEL-NLP----KTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPN  222 (302)
Q Consensus       149 ~~~Rl~kEL~eL-~lP----~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPN  222 (302)
                      +.+|+++|++++ +.+    .++. +...++|+.+.++.| ||++||||||+|.++|.+|++|||+||+|+|.|+|||||
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~I~-ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn   82 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAGII-VEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN   82 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcceE-EEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence            678899999988 233    4554 445568999999999 999999999999999999999999999999999999999


Q ss_pred             ccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        223 IDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       223 Id~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      |++ +|.||||||.+.|.+++||.++|++||++|..|++.||.+.++|+.|.+|++.|.+.||.|...+.
T Consensus        83 VSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA  152 (200)
T KOG0418|consen   83 VSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFA  152 (200)
T ss_pred             CCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            998 899999999999999999999999999999999999999999999999999999999999876544

>KOG0424|consensus

Probab=100.00  E-value=2.2e-34  Score=243.43  Aligned_cols=141  Identities=27%  Similarity=0.513  Sum_probs=128.8

Q ss_pred             HHHHHHHHhcc--CCCCCeEEeccC-----CCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        150 CCVFLSDLNEL--NLPKTCTTEFPN-----PDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       150 ~~Rl~kEL~eL--~lP~~~~~~~p~-----~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      +.||+.|=+..  +-|-+.+ +.|.     ..|++.|+|.| |+.+|+||||.|++++.||++||..||+++|.++.|||
T Consensus         6 ~~rl~eErk~wrk~hp~gf~-AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP   84 (158)
T KOG0424|consen    6 LNRLAEERKKWRKDHPFGFY-AKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP   84 (158)
T ss_pred             HHHHHHHHHHHhhcCCCcee-eeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence            56777777777  4677775 4452     34799999999 99999999999999999999999999999999999999


Q ss_pred             cccCCCcEEeccCCCC--CCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        222 NIDLEGNVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       222 NId~~G~VCL~iL~e~--W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      |||++|.|||+||.++  |+|+.||.+||.+||.||.+||+.+|+|.||...|..||.+|+++||.+++++.
T Consensus        85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a  156 (158)
T KOG0424|consen   85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYA  156 (158)
T ss_pred             CcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhc
Confidence            9999999999999865  999999999999999999999999999999999999999999999999998764

>KOG0422|consensus

Probab=100.00  E-value=1.6e-32  Score=231.01  Aligned_cols=146  Identities=29%  Similarity=0.520  Sum_probs=134.7

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      +.+|+.+||++|  +....+.-...++.|++.|++.|-|++-||..|.|+++|.||.+|||+||+|.|.|+|||||||+.
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~   82 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEK   82 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCC
Confidence            568999999999  345555444456889999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        227 GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       227 G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      |.||+.|+. |.|+|+..+.+||..|..++.+|+++.|++.|+|+.|.+|+..|.++|.++++++....
T Consensus        83 gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~r  151 (153)
T KOG0422|consen   83 GQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKR  151 (153)
T ss_pred             CceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcC
Confidence            999999985 89999999999999999999999999999999999999999999999999999987653

>KOG0416|consensus

Probab=99.97  E-value=6.4e-31  Score=227.85  Aligned_cols=141  Identities=27%  Similarity=0.497  Sum_probs=124.6

Q ss_pred             HHHHHHHhcc-CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC-CC
Q psy16981        151 CVFLSDLNEL-NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL-EG  227 (302)
Q Consensus       151 ~Rl~kEL~eL-~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~-~G  227 (302)
                      +|+..|+..| .-...+.   ..++++.+++|.+ ||.++||+||++++.+.+|++||++.|.|.|.++|||||||. +|
T Consensus         6 rRid~Dv~KL~~s~yeV~---~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG   82 (189)
T KOG0416|consen    6 RRIDTDVMKLLMSDYEVT---IINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG   82 (189)
T ss_pred             cchhhHHHHHHhcCCeEE---EecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence            4555566555 2222222   2456799999999 999999999999999999999999999999999999999998 89


Q ss_pred             cEEeccCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        228 NVCLNILREDWKPVLTINSIVYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       228 ~VCL~iL~e~W~P~~tI~sIL~~-Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      .||||.+...|+|.+.+..|+.. |-.||..||+.||||.|||.+|.++++.|+++|++++++++...
T Consensus        83 sVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~  150 (189)
T KOG0416|consen   83 SVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE  150 (189)
T ss_pred             ccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence            99999999999999999999876 57899999999999999999999999999999999999998765

>KOG0423|consensus

Probab=99.96  E-value=2.7e-29  Score=218.39  Aligned_cols=141  Identities=29%  Similarity=0.570  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ....+.+.+|+++|  ++|.++. ++++++|+....+.| ||.||||++|.|+..+.+..+||++||+-.|+|+||||||
T Consensus         9 p~vik~~~kEl~~l~~~PPdGIK-V~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNV   87 (223)
T KOG0423|consen    9 PNVIKQLAKELKSLDESPPDGIK-VVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNV   87 (223)
T ss_pred             hHHHHHHHHHHHhcccCCCCceE-EecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCc
Confidence            47788899999999  4777876 689999999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q psy16981        224 DLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR  288 (302)
Q Consensus       224 d~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~  288 (302)
                      -.+|.||.+.|..+|+|.+.|.+||..|..||..|||++.+|.||.+++.+|.++|.+.||-+..
T Consensus        88 aaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te  152 (223)
T KOG0423|consen   88 AANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE  152 (223)
T ss_pred             ccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999997753

>KOG0427|consensus

Probab=99.91  E-value=2.6e-24  Score=180.03  Aligned_cols=121  Identities=21%  Similarity=0.449  Sum_probs=106.2

Q ss_pred             ccchHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecc-c
Q psy16981        143 TQTLFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP-V  218 (302)
Q Consensus       143 ~~~l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~-I  218 (302)
                      ......+.+||+|||.++  ++|.|+...  ..||+..|.+-+ |.+||.|+|.+|.+.+.||+.||++.|.|.|..+ .
T Consensus        10 k~ls~~at~RLqKEl~e~q~~pP~G~~~~--v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P   87 (161)
T KOG0427|consen   10 KALSKIATNRLQKELSEWQNNPPTGFKHR--VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP   87 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcceee--cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence            334467889999999999  578888653  678999999977 9999999999999999999999999999999987 5


Q ss_pred             ccccccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcC-CCCCCCcc
Q psy16981        219 YHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLE-PNPEDPLN  265 (302)
Q Consensus       219 ~HPNId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~-Pn~~dPlN  265 (302)
                      .||+||.+|.||||||.++|+|++++.+|+++|.+||.+ ..-..|.+
T Consensus        88 ~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~D  135 (161)
T KOG0427|consen   88 LHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTD  135 (161)
T ss_pred             CCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence            799999999999999999999999999999999999975 33334443

>KOG0894|consensus

Probab=99.85  E-value=3.4e-21  Score=172.89  Aligned_cols=110  Identities=24%  Similarity=0.526  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHhcc-CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecc--cccc
Q psy16981        146 LFHVCCVFLSDLNEL-NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP--VYHP  221 (302)
Q Consensus       146 l~~~~~Rl~kEL~eL-~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~--I~HP  221 (302)
                      .+.+.+||+||++.| ..|...+.+.|.++|+++||-+| ||++|||+||.|+.+|.||++||++||.|++.|+  .|-+
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt   82 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT   82 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence            367899999999999 34555556899999999999999 9999999999999999999999999999999986  4444


Q ss_pred             cccCCCcEEeccCC---CCCCCcCCHHHHHHHHHHhhcCCC
Q psy16981        222 NIDLEGNVCLNILR---EDWKPVLTINSIVYGLQYLFLEPN  259 (302)
Q Consensus       222 NId~~G~VCL~iL~---e~W~P~~tI~sIL~~Iq~Ll~~Pn  259 (302)
                      |    -++||++-.   +.|+|.+++.+||.+|.++|.+-.
T Consensus        83 n----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~  119 (244)
T KOG0894|consen   83 N----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS  119 (244)
T ss_pred             C----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence            3    689999875   889999999999999999887644

>KOG0429|consensus

Probab=99.82  E-value=8e-20  Score=164.61  Aligned_cols=138  Identities=25%  Similarity=0.403  Sum_probs=120.8

Q ss_pred             HHHHHhcc--CCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCC--CCCeeeEecccccccccC-CC
Q psy16981        153 FLSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPH--EPPKVKCETPVYHPNIDL-EG  227 (302)
Q Consensus       153 l~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~--~PP~V~F~T~I~HPNId~-~G  227 (302)
                      |.-|+...  ..-.|+ .+.|+-.+-+.|.++|....|.|.||+|+|+|.+|++||.  +.|+|.|.+.++||+|.+ ++
T Consensus        24 llAEf~lV~~ekL~gI-yviPSyan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~sk  102 (258)
T KOG0429|consen   24 LLAEFVLVCREKLDGI-YVIPSYANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSK  102 (258)
T ss_pred             HHHHHHHHHhccCCce-EEcccccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCcc
Confidence            33444444  234555 4789999999999999999999999999999999999995  899999999999999999 89


Q ss_pred             cEEeccCCCCCCCcC-CHHHHHHHHHHhhcCCCCCCC-c-cHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        228 NVCLNILREDWKPVL-TINSIVYGLQYLFLEPNPEDP-L-NKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       228 ~VCL~iL~e~W~P~~-tI~sIL~~Iq~Ll~~Pn~~dP-l-N~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      .+|++-....|.-.- +|++||..||.+|.+|+.+.+ + |+|||.+|++++++|.++|+++++-+.
T Consensus       103 eLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr  169 (258)
T KOG0429|consen  103 ELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASR  169 (258)
T ss_pred             ceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999987776797776 899999999999999998876 4 999999999999999999999988653

>KOG0428|consensus

Probab=99.74  E-value=7e-18  Score=154.26  Aligned_cols=111  Identities=22%  Similarity=0.445  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        147 FHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      ..+++||++|.+||..|...+.+.|-+||+++|+.+| ||.+|-|+||+|+.+|.||.+||++||.+..+|+-  -.+..
T Consensus        10 npaVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE~   87 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFEV   87 (314)
T ss_pred             CHHHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Cceee
Confidence            4789999999999999998888999999999999999 99999999999999999999999999999998851  11223


Q ss_pred             CCcEEeccCC---CCCCCcCCHHHHHHHHHHhhc-CCC
Q psy16981        226 EGNVCLNILR---EDWKPVLTINSIVYGLQYLFL-EPN  259 (302)
Q Consensus       226 ~G~VCL~iL~---e~W~P~~tI~sIL~~Iq~Ll~-~Pn  259 (302)
                      +-+|||+|-.   |.|.|+|+|.+.|+.|..+|- .|+
T Consensus        88 nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~  125 (314)
T KOG0428|consen   88 NKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE  125 (314)
T ss_pred             CceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence            5679999986   889999999999999988884 344

>KOG0895|consensus

Probab=99.59  E-value=8.6e-16  Score=162.31  Aligned_cols=109  Identities=27%  Similarity=0.488  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecc--ccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP--VYHPN  222 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~--I~HPN  222 (302)
                      ..++..+.+.+.|  ++|.++. +...++.+..+.++| |+.+|||.+|.|.|+|.||++||.+||.|...+.  .++||
T Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~-vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn  929 (1101)
T KOG0895|consen  851 QWAKKVQTEWKILPLSLPSGIF-VRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN  929 (1101)
T ss_pred             HHHHHHHHHHHhhhccCCCceE-EEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence            4555566677777  6899996 567888888888877 9999999999999999999999999999999886  78999


Q ss_pred             ccCCCcEEeccCC-------CCCCCcCCHHHHHHHHHHhhcC
Q psy16981        223 IDLEGNVCLNILR-------EDWKPVLTINSIVYGLQYLFLE  257 (302)
Q Consensus       223 Id~~G~VCL~iL~-------e~W~P~~tI~sIL~~Iq~Ll~~  257 (302)
                      +|.+|+||+++|.       |-|+|+-+|.+||.+||.|+..
T Consensus       930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence            9999999999996       6799998999999999999864

>KOG0895|consensus

Probab=99.44  E-value=3.7e-13  Score=142.65  Aligned_cols=126  Identities=26%  Similarity=0.411  Sum_probs=110.7

Q ss_pred             CCccceeccccccchHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCC
Q psy16981        132 QESGFNVSIRQTQTLFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHE  208 (302)
Q Consensus       132 ~~~~~~~~~~~~~~l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~  208 (302)
                      .|.+..-..+.+...+....|+++|++-+  ++|.++ .+.|.+.++...++.| ||.++||++|+|.|+|.||..||..
T Consensus       266 ~~~~~~k~~~~k~hs~~~skrv~ke~~llskdlpEgi-fvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~  344 (1101)
T KOG0895|consen  266 FHHYAKKGKSSKPHSKNWSKKVAKELKLLSKDLPEGI-FVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAV  344 (1101)
T ss_pred             cccccccCCCCCccchhhHHHHHHHhhhhcccCCCCc-cccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCC
Confidence            44455555666777788889999999999  578886 4678999999999877 8999999999999999999999999


Q ss_pred             CCeeeEecc---cccccccCCCcEEeccCC-------CCCCCc-CCHHHHHHHHHHhhcCC
Q psy16981        209 PPKVKCETP---VYHPNIDLEGNVCLNILR-------EDWKPV-LTINSIVYGLQYLFLEP  258 (302)
Q Consensus       209 PP~V~F~T~---I~HPNId~~G~VCL~iL~-------e~W~P~-~tI~sIL~~Iq~Ll~~P  258 (302)
                      ||.|.+++.   .+.||.|.+|+||+++|.       +.|+|. .+|.++|++||.++.+-
T Consensus       345 pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  345 PPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             CceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence            999999986   889999999999999985       689999 69999999999998754

>KOG0896|consensus

Probab=99.20  E-value=5.2e-11  Score=100.53  Aligned_cols=94  Identities=21%  Similarity=0.407  Sum_probs=78.9

Q ss_pred             CCCeEEeccCCCC--ceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC-CCcEEeccC--CC
Q psy16981        163 PKTCTTEFPNPDD--LLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL-EGNVCLNIL--RE  236 (302)
Q Consensus       163 P~~~~~~~p~~dd--l~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~-~G~VCL~iL--~e  236 (302)
                      +..++....+.+|  +..|..+| ||+.|+||+-+|.++|.+.++||..||+|+|.++|.-+.|+. +|.|.-.-+  -+
T Consensus        23 ~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~  102 (138)
T KOG0896|consen   23 DGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLA  102 (138)
T ss_pred             CceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhh
Confidence            5556655556666  56899877 999999999999999999999999999999999999999987 677765333  27


Q ss_pred             CCCCcCCHHHHHHHHHHhhc
Q psy16981        237 DWKPVLTINSIVYGLQYLFL  256 (302)
Q Consensus       237 ~W~P~~tI~sIL~~Iq~Ll~  256 (302)
                      +|+-.+++..||..+..++.
T Consensus       103 ~W~~~y~~~~vl~~lr~~m~  122 (138)
T KOG0896|consen  103 RWQRSYSIKMVLGQLRKEMM  122 (138)
T ss_pred             cccccchhhHHHHhhhHHHH
Confidence            99999999999999986553

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.23  E-value=3.8e-06  Score=70.99  Aligned_cols=67  Identities=24%  Similarity=0.540  Sum_probs=60.7

Q ss_pred             CCcEEEEEEEeCCCCCCCCCeeeEeccc---ccccccCCCcEEe---ccCCCCCCCcCCHHHHHHHHHHhhcC
Q psy16981        191 RSGKFVFSFKVGPNYPHEPPKVKCETPV---YHPNIDLEGNVCL---NILREDWKPVLTINSIVYGLQYLFLE  257 (302)
Q Consensus       191 eGG~F~f~I~fp~~YP~~PP~V~F~T~I---~HPNId~~G~VCL---~iL~e~W~P~~tI~sIL~~Iq~Ll~~  257 (302)
                      .|+.|.+.|.+|+.||..||.|....+.   +-|||+.+|.+|+   ...-+.|.|...+..+|.....+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999998654   6899999999999   66678899999999999999998873

>KOG0897|consensus

Probab=97.99  E-value=4e-06  Score=69.41  Aligned_cols=91  Identities=20%  Similarity=0.425  Sum_probs=67.8

Q ss_pred             EEEEEEeCCCCCCCCCeeeEeccccccccc-----CCCcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCC--CCCCccH
Q psy16981        195 FVFSFKVGPNYPHEPPKVKCETPVYHPNID-----LEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPN--PEDPLNK  266 (302)
Q Consensus       195 F~f~I~fp~~YP~~PP~V~F~T~I~HPNId-----~~G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn--~~dPlN~  266 (302)
                      ..+.+.|+++||+.||.++    +.+|.++     .+|.||+.+|. ++|+.+++|+.++++|..++-.-.  ...|++.
T Consensus        13 ill~~~f~~~fp~~ppf~r----vv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k   88 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPR----VVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK   88 (122)
T ss_pred             eEeeeecccCCCCCCCcce----eeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence            4567889999999999998    4566665     47899999995 789999999999999999987643  4456655


Q ss_pred             HHHHHH--HhCHHHHHHHHHHHHHcc
Q psy16981        267 EAAEVL--QNNRRLFEQNVQKAMRGG  290 (302)
Q Consensus       267 eAA~~~--~~nr~~F~~~vr~~~~~~  290 (302)
                      +-- +|  ..--+.|+..++.--+-|
T Consensus        89 ~sk-~~s~~qa~~sfksLv~~heksg  113 (122)
T KOG0897|consen   89 SSK-LYSHSQAQQSFKSLVQIHEKSG  113 (122)
T ss_pred             hhh-HhhHHHHHHHHHHHHHHHHhcC
Confidence            543 33  333566777776554443

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.88  E-value=2.2e-05  Score=65.81  Aligned_cols=104  Identities=24%  Similarity=0.361  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhccCCCCCeEEeccCC--CCceEEEEEEeCCCcccCCcEE--EEEEEeCCCCCCCCCeeeEecccc-----
Q psy16981        149 VCCVFLSDLNELNLPKTCTTEFPNP--DDLLSFKLIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVY-----  219 (302)
Q Consensus       149 ~~~Rl~kEL~eL~lP~~~~~~~p~~--ddl~~W~v~IgP~~tpYeGG~F--~f~I~fp~~YP~~PP~V~F~T~I~-----  219 (302)
                      .+.++...+.+|.+..... .+.+.  ..++...++|.-   .|+|..|  .+.|.+|.+||.+||.|.......     
T Consensus         4 d~~~~l~~y~~L~p~~~~f-t~~~G~~~~LL~L~Gtipi---~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~   79 (121)
T PF05743_consen    4 DVLSVLQNYPSLRPRTDTF-TFNDGSSKLLLCLYGTIPI---TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKP   79 (121)
T ss_dssp             HHHHHHHHSTTEEEEEEEE-ESTTSTEEEEEEEEEEEEE---CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGG
T ss_pred             HHHHHHHHCCCCcEeeeee-EcCCCChheEEEEecCccc---ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCC
Confidence            3444555555544333322 23332  245566666632   3777777  577788999999999998865422     


Q ss_pred             cccccCCCcEEeccCCCCCCC-cCCHHHHHHHHHHhhcC
Q psy16981        220 HPNIDLEGNVCLNILREDWKP-VLTINSIVYGLQYLFLE  257 (302)
Q Consensus       220 HPNId~~G~VCL~iL~e~W~P-~~tI~sIL~~Iq~Ll~~  257 (302)
                      +.+||.+|+|.+..|. +|.+ ..+|.+++..++..|.+
T Consensus        80 ~~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~F~~  117 (121)
T PF05743_consen   80 SHHVDSNGRVYLPYLQ-NWNPPSSNLVDLVQELQAVFSE  117 (121)
T ss_dssp             CCCB-TTSBB-SHHHH-T--TTTS-HHHHHHHHHHCCCH
T ss_pred             CCeECCCCCEeCchhc-cCCCCCCCHHHHHHHHHHHHhH
Confidence            4499999999998886 7877 67999999999888853

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG0420|consensus

Probab=97.76  E-value=1.2e-05  Score=70.83  Aligned_cols=28  Identities=11%  Similarity=0.147  Sum_probs=26.7

Q ss_pred             ccccccceecccCCcccccccccccccC
Q psy16981         79 SVLLHQGVLLYKGPTYLFGQESGFNQTN  106 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~f~~~~~~~~~n  106 (302)
                      +++|.||+|||+||+|.|.++++..||.
T Consensus        63 elti~PdEGyY~gGkf~F~~~v~~~Yp~   90 (184)
T KOG0420|consen   63 ELTITPDEGYYQGGKFRFKFKVPNAYPH   90 (184)
T ss_pred             EEEEccCcceecCceEEEEEECCCCCCC
Confidence            7899999999999999999999999994

>KOG2391|consensus

Probab=96.46  E-value=0.0089  Score=58.12  Aligned_cols=95  Identities=25%  Similarity=0.342  Sum_probs=69.3

Q ss_pred             CCCCeEEeccCCC--CceEEEEEEeCCCcccCCcEEE--EEEEeCCCCCCCCCeeeEecc-----cccccccCCCcEEec
Q psy16981        162 LPKTCTTEFPNPD--DLLSFKLIISPDEGFYRSGKFV--FSFKVGPNYPHEPPKVKCETP-----VYHPNIDLEGNVCLN  232 (302)
Q Consensus       162 lP~~~~~~~p~~d--dl~~W~v~IgP~~tpYeGG~F~--f~I~fp~~YP~~PP~V~F~T~-----I~HPNId~~G~VCL~  232 (302)
                      .|.+-...+.|..  .++...++|   -.+|.|.+|.  +.|.+.+.||..||.+.....     -.|-+||.+|.|-|.
T Consensus        36 ~P~t~tf~~~Dg~s~~ll~~~GTI---p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LP  112 (365)
T KOG2391|consen   36 RPKTDTFTHNDGRSRLLLQLDGTI---PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLP  112 (365)
T ss_pred             CcccceEEecCCCccchhhccCcc---cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEech
Confidence            3555555666643  455555554   2357787775  667789999999999876532     239999999999999


Q ss_pred             cCCCCCCC-cCCHHHHHHHHHHhhcCCCC
Q psy16981        233 ILREDWKP-VLTINSIVYGLQYLFLEPNP  260 (302)
Q Consensus       233 iL~e~W~P-~~tI~sIL~~Iq~Ll~~Pn~  260 (302)
                      .|. +|.| +.+|..++..|.+.|.++.+
T Consensus       113 YLh-~W~~pssdLv~Liq~l~a~f~~~pP  140 (365)
T KOG2391|consen  113 YLH-NWDPPSSDLVGLIQELIAAFSEDPP  140 (365)
T ss_pred             hhc-cCCCccchHHHHHHHHHHHhcCCCc
Confidence            997 6765 45899999999998876443

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=91.90  E-value=0.92  Score=35.51  Aligned_cols=39  Identities=21%  Similarity=0.362  Sum_probs=27.3

Q ss_pred             EEEEEEeCCCc--ccCCcEEEEEEEeCCCCCCCCCeeeEec
Q psy16981        178 SFKLIISPDEG--FYRSGKFVFSFKVGPNYPHEPPKVKCET  216 (302)
Q Consensus       178 ~W~v~IgP~~t--pYeGG~F~f~I~fp~~YP~~PP~V~F~T  216 (302)
                      .+.+.+.+.+.  .-..-.+.+.|.+|++||..+|.|.+.+
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence            45555543322  2334568899999999999999998765

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=91.79  E-value=1  Score=38.08  Aligned_cols=79  Identities=15%  Similarity=0.274  Sum_probs=53.5

Q ss_pred             ceEEEEEE--eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCcE--EeccC--------------CCC
Q psy16981        176 LLSFKLII--SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV--CLNIL--------------RED  237 (302)
Q Consensus       176 l~~W~v~I--gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~V--CL~iL--------------~e~  237 (302)
                      -..|.++=  ..+.|.|.+..-.+-|.+|+.||..+|.+.+..+-....  ..|.|  |-+..              ...
T Consensus        23 ~~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~  100 (122)
T PF14462_consen   23 GRRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNP  100 (122)
T ss_pred             CccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence            34565533  377888999999999999999999999887655422111  01223  32222              146


Q ss_pred             CCCcC-CHHHHHHHHHHhhc
Q psy16981        238 WKPVL-TINSIVYGLQYLFL  256 (302)
Q Consensus       238 W~P~~-tI~sIL~~Iq~Ll~  256 (302)
                      |.|.. +|.+.|.-|...|.
T Consensus       101 W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen  101 WRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CCCCCCcHHHHHHHHHHHHh
Confidence            99987 79998888877663

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=91.44  E-value=0.21  Score=43.34  Aligned_cols=54  Identities=19%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             EEEEEEeCCCCCCCCCeeeEecc-cccccccCCCcEEeccCC----CCCCCcCCHHHHH
Q psy16981        195 FVFSFKVGPNYPHEPPKVKCETP-VYHPNIDLEGNVCLNILR----EDWKPVLTINSIV  248 (302)
Q Consensus       195 F~f~I~fp~~YP~~PP~V~F~T~-I~HPNId~~G~VCL~iL~----e~W~P~~tI~sIL  248 (302)
                      |.|.|.+|..||..||.+..-.- =--.-.|..|+|||++-.    ..=.|...|.+.|
T Consensus        77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen   77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred             EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence            56777789999999999875320 011123458999998754    2236677777665

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=90.49  E-value=0.53  Score=37.12  Aligned_cols=44  Identities=23%  Similarity=0.439  Sum_probs=27.6

Q ss_pred             CCceEEEEEEe---CCCcccCCcEEEEEEEeCCCCCCCCCeeeEecc
Q psy16981        174 DDLLSFKLIIS---PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP  217 (302)
Q Consensus       174 ddl~~W~v~Ig---P~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~  217 (302)
                      .+...+.+.+.   ...+.-....+.+.|.||++||..+|.|...+.
T Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~   73 (113)
T PF05773_consen   27 KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP   73 (113)
T ss_dssp             SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred             CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence            34445555552   233344456799999999999999999986654

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=88.86  E-value=0.63  Score=41.04  Aligned_cols=62  Identities=16%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCCCCCCeeeEecccc---cccccCC-----CcEEeccCC-CCCCCcCCHHHHHHHHHHhhcC
Q psy16981        196 VFSFKVGPNYPHEPPKVKCETPVY---HPNIDLE-----GNVCLNILR-EDWKPVLTINSIVYGLQYLFLE  257 (302)
Q Consensus       196 ~f~I~fp~~YP~~PP~V~F~T~I~---HPNId~~-----G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~  257 (302)
                      .+.|.|+.+||..+|.|.++-+.|   +||+...     ..+|+.--. .+|.+..++..+|..|..-|.+
T Consensus        56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence            367899999999999877765433   5778765     679986543 5799999999999999887743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		5e-75
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		2e-74
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		1e-33
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		9e-26
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		1e-25
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-21
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		2e-20
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		3e-20
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		4e-20
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		6e-20
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		7e-20
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		8e-20
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		1e-19
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-19
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-19
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		2e-19
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		2e-19
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		2e-19
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		2e-19
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		2e-19
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-19
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-19
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		3e-19
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		3e-19
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		3e-19
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		3e-19
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		3e-19
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		5e-19
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		8e-19
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		8e-19
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		9e-19
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		3e-18
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		3e-18
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-18
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		8e-18
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		1e-17
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-17
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-17
3jvz_A	146	E2~ubiquitin-Hect Length = 146		2e-17
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-17
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		2e-17
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		3e-17
1jas_A	152	Hsubc2b Length = 152		4e-17
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-17
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		4e-17
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		8e-17
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		1e-16
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-16
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		1e-16
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-16
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		2e-16
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-16
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-16
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		3e-16
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-16
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		3e-16
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		3e-16
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		3e-16
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		6e-16
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		6e-16
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		6e-16
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		6e-16
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		6e-16
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		7e-16
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		7e-16
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		8e-16
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		9e-16
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-15
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		1e-15
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-15
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		2e-15
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		2e-15
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		3e-15
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		4e-15
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-14
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		9e-14
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		1e-13
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		3e-13
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		4e-13
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		5e-13
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		5e-12
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		2e-11
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		3e-11
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		3e-11
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-11
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		3e-11
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		1e-10
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		4e-10
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-10
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		4e-10
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		5e-10
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		4e-09
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		6e-09
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-07
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		1e-07
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		1e-07
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		3e-07
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		6e-07
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		7e-07
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		1e-06
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		3e-06
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		2e-05

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score =  277 bits (709), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 137/147 (93%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 34  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 93
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNV LNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 94  TMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 153
Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 154 RRLFEQNVQRSMRGGYIGSTYFERCLK 180

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 137/147 (93%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 14  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 73
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 74  TXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 133
Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++ RGGYIGS YFERCLK
Sbjct: 134 RRLFEQNVQRSXRGGYIGSTYFERCLK 160

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 93/149 (62%), Gaps = 6/149 (4%)
Query: 156 DLNELNLPKTCTTE-FPNPDDLL-----SFKLIISPDEGFYRSGKFVFSFKVGPNYPHEP 209
           DL+ L+LP T T     +PD          ++I+ PDEG+Y  G   F+      YP EP
Sbjct: 37  DLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEP 96
Query: 210 PKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
           PKV C   ++HPNIDL+GNVCLNILREDW P L + SI+ GL +LFLEPNP DPLNK+AA
Sbjct: 97  PKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAA 156
Query: 270 EVLQNNRRLFEQNVQKAMRGGYIGSVYFE 298
           ++L    + F + V+  M GG I  V ++
Sbjct: 157 KLLCEGEKEFAEAVRLTMSGGSIEHVKYD 185

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 159 ELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
           E NLP TC   FP+P+ L  F+L ++PDEG+Y+ GKF F  +V   Y   PPKVKC T +
Sbjct: 27  EANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI 86
Query: 219 YHPNIDLEGNVCLNILRED------WKPVLTINSIVYGLQYLFLE-PNPEDPLNKEAAEV 271
           +HPNI   G +CL++LRE       W P  T+  +V+GL  LF +  N +DPLN EAAE 
Sbjct: 87  WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEH 146
Query: 272 LQNNRRLFEQNVQKAMR 288
              ++  F   V   ++
Sbjct: 147 HLRDKEDFRNKVDDYIK 163

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 159 ELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
           E NLP TC   FP+P+ L  F+L ++PDEG+Y+ GKF F  +V   Y   PPKVKC T +
Sbjct: 27  EANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI 86
Query: 219 YHPNIDLEGNVCLNILRED------WKPVLTINSIVYGLQYLFLE-PNPEDPLNKEAAEV 271
           +HPNI   G +CL++LRE       W P  T+  +V+GL  LF +  N +DPLN EAAE 
Sbjct: 87  WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEH 146
Query: 272 LQNNRRLFEQNVQKAMR 288
              ++  F   V   ++
Sbjct: 147 HLRDKEDFRNKVDDYIK 163

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           L+DL +   P + ++  P  DDL  ++  I+ P +  Y  G F  S     +YP +PPKV
Sbjct: 10  LADLGKD--PPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR+ W P LTI+ ++  +  L  +PNP+DPL  E A V 
Sbjct: 68  NFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVY 127
Query: 273 QNNRRLFEQNVQKAMR 288
           + +R  +E + ++  R
Sbjct: 128 KTDRSRYELSAREWTR 143

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 156 DLNELNL-PKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           +LN+L+  P T  +  P  DD+  ++  I+ P++  Y  G F  +     +YP +PPKV 
Sbjct: 29  ELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVN 88
Query: 214 CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
             T +YHPNI+ +G +CL+IL++ W P LTI+ ++  +  L  +PNP+DPL  E A + +
Sbjct: 89  FTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK 148
Query: 274 NNRRLFEQNVQK 285
           ++R  ++Q  ++
Sbjct: 149 SDRMRYDQTARE 160

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P    +  P  D++L+++ II  P E  +  G F  S +    YP++PP VK  + ++HP
Sbjct: 23  PPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHP 82
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 281
           N+  +G++CL+IL+  W P   + +I+  +Q L  EPNP  P N  AA++ Q NRR +E+
Sbjct: 83  NVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 142
Query: 282 NVQKAMRGGYI 292
            VQ+ +   ++
Sbjct: 143 RVQQIVEQSWL 153

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P    +  P  D++L+++ II  P E  +  G F  S +    YP++PP VK  + ++HP
Sbjct: 20  PPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHP 79
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 281
           N+  +G++CL+IL+  W P   + +I+  +Q L  EPNP  P N  AA++ Q NRR +E+
Sbjct: 80  NVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 139
Query: 282 NVQKAMRGGYI 292
            VQ+ +   ++
Sbjct: 140 RVQQIVEQSWL 150

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           L DL   + P  C+   P  DDL  ++  I+ P E  Y+ G F  +     +YP +PPKV
Sbjct: 13  LQDLGR-DPPAQCSAG-PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKV 70
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 71  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130
Query: 273 QNNRRLFEQ 281
           + +R  + Q
Sbjct: 131 KTDRERYNQ 139

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL E + P +C+   P  DDL  ++  I+ P +  Y  G F  S     +YP +PPK+
Sbjct: 11  LSDL-ERDPPTSCSAG-PVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKI 68
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  GN+CL+IL++ W P LT++ ++  +  L  + NP+DPL  E A + 
Sbjct: 69  SFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIY 128
Query: 273 QNNRRLFEQNVQK 285
           + +R  +E   ++
Sbjct: 129 KTDRPKYEATARE 141

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 19  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 77
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 78  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 137
Query: 273 QNNRRLFEQ 281
           Q +R  + +
Sbjct: 138 QTDREKYNR 146

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 174 DDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLN 232
           DD+  +   I+ PD+  Y+ G F        +YP + P+V   T VYHPNI+  G +CL+
Sbjct: 31  DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLD 90
Query: 233 ILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
           IL++ W P LT++ ++  +  L  +PNP DPL+ E A VL+ N++ FE   ++  R
Sbjct: 91  ILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTR 146

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 14  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 72
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 73  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 132
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 133 KTDREKYNR 141

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 12  LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 130 KTDRDKYNR 138

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 20  LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 77
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 78  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 137
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 138 KTDRDKYNR 146

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DDL  ++  I+ P +  Y+ G F  +     +YP +PPK+
Sbjct: 16  LSDLQR-DPPAHCSAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 73
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LT++ ++  +  L  +PNP+DPL  + A++ 
Sbjct: 74  AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 133
Query: 273 QNNRRLFEQNVQK 285
           ++++  + ++ ++
Sbjct: 134 KSDKEKYNRHARE 146

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 11  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 130 KTDREKYNR 138

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DDL  ++  I+ P +  Y+ G F  +     +YP +PPK+
Sbjct: 12  LSDLQR-DPPAHCSAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LT++ ++  +  L  +PNP+DPL  + A++ 
Sbjct: 70  AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 129
Query: 273 QNNRRLFEQNVQK 285
           ++++  + ++ ++
Sbjct: 130 KSDKEKYNRHARE 142

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 11  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 130 KTDREKYNR 138

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 27  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 85
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 86  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 146 KTDREKYNR 154

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DDL  ++  I+ P +  Y+ G F  +     +YP +PPK+
Sbjct: 28  LSDLQR-DPPAHCSAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 85
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LT++ ++  +  L  +PNP+DPL  + A++ 
Sbjct: 86  AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 145
Query: 273 QNNRRLFEQNVQK 285
           ++++  + ++ ++
Sbjct: 146 KSDKEKYNRHARE 158

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 18  LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 75
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 76  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 135
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 136 KTDRDKYNR 144

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 9   LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 66
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 67  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 126
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 127 KTDRDKYNR 135

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 9   ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 68  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 128 KTDREKYNR 136

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 11  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 130 KTDREKYNR 138

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 11  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++ L+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNR----RLFEQNVQKAMRGG 290
           + +R    R+  +  QK   GG
Sbjct: 130 KTDREKYNRIAREWTQKYAMGG 151

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 168 TEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE 226
           T FP+ D+L  +   +  P +  Y S K+  + +   +YP++PP VK  TP +HPN+D  
Sbjct: 30  TAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQS 89
Query: 227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
           GN+CL+IL+E+W     + +I+  LQ L  EPN   PLN +AA++  N
Sbjct: 90  GNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSN 137

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLI-ISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++   + P++  Y+ G F  +     +YP +PPKV
Sbjct: 11  ELNDLARDPPAQCSAG-PVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 130 KTDREKYNR 138

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 7/137 (5%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           L DL   + P  C+   P  DDL  ++  I+ P +  Y+ G F  +     +YP +PPKV
Sbjct: 15  LQDLQR-DPPAQCSAG-PVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKV 72
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LT++ ++  +  L  +PNP+DPL  + A + 
Sbjct: 73  AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIY 132
Query: 273 QNNR----RLFEQNVQK 285
           ++++    RL  +  QK
Sbjct: 133 KSDKEKYNRLAREWTQK 149

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 11  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ LR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 130 KTDREKYNR 138

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 12  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 70
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++ L+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 71  AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 131 KTDREKYNR 139

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 10  LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++ L+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 68  AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 128 KTDRDKYNR 136

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 27  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 85
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++ L+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 86  AFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 146 KTDREKYNR 154

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           LSDL   + P  C    P  DDL  ++  I+ P +  Y+ G F  +     +YP +PPK+
Sbjct: 16  LSDLQR-DPPAHCRAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 73
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++ L+ILR  W P LT++ ++  +  L  +PNP+DPL  + A++ 
Sbjct: 74  AFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 133
Query: 273 QNNRRLFEQNVQK 285
           ++++  + ++ ++
Sbjct: 134 KSDKEKYNRHARE 146

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 67/118 (56%)
Query: 176 LLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR 235
           +L   +I  PD+  +  G F  S +   +YP++PP V+  + ++HPNI  +G++CL+IL+
Sbjct: 34  MLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 93
Query: 236 EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG 293
             W P+  + +I+  +Q L  +PNP  P N EAA +   ++R + + V+  +   +  
Sbjct: 94  NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 158 NELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCET 216
           N  N P       P P++   F ++I+ PD   Y  G +     +   YP EPPKV+  T
Sbjct: 12  NLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT 71
Query: 217 PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
            +YHPNID  G +CL+IL++ W P L I +++  +Q L   P P+DPL+ + AE  + ++
Sbjct: 72  KIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDK 131
Query: 277 RLFEQ 281
              E 
Sbjct: 132 NDAEH 136

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 158 NELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCET 216
           N  N P       P P++   F ++I+ PD   Y  G +     +   YP EPPKV+  T
Sbjct: 12  NLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT 71
Query: 217 PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
            +YHPNID  G +CL+IL++ W P L I +++  +Q L   P P+DPL+ + AE  + ++
Sbjct: 72  KIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDK 131
Query: 277 RLFEQ 281
              E 
Sbjct: 132 NDAEH 136

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 8   ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 66
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++ L+ILR  W P L I+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 67  AFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIY 126
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 127 KTDREKYNR 135

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P    T  P+ D+L  F++ I  P++  Y  G F     +  +YP E PKV+  T +YHP
Sbjct: 19  PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 78
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
           NID  G +CL++L+ +W P L I +++  +Q L   PNP DPL  + AE
Sbjct: 79  NIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P    T  P+ D+L  F++ I  P++  Y  G F     +  +YP E PKV+  T +YHP
Sbjct: 21  PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 80
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
           NID  G +CL++L+ +W P L I +++  +Q L   PNP DPL  + AE
Sbjct: 81  NIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 190 YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIV 248
           Y  G F     + P+YP+ PPK+K  T ++HPNI  + G +CL+IL+ +W P LTI + +
Sbjct: 89  YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL 148
Query: 249 YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
             +Q +  +P P DP + E A+++  N  LF Q  +
Sbjct: 149 LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P    +  P+ ++++ +  +I   EG  +  G F    +    YP++PP V+  + ++HP
Sbjct: 20  PPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHP 79
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 281
           N+  +G++CL+IL+  W P   ++SI+  +Q L  EPNP  P N +AA++ Q N+R +E+
Sbjct: 80  NVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139
Query: 282 NVQKAMRGGYIGS 294
            V   +   +  S
Sbjct: 140 RVSAIVEQSWNDS 152

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C    P  DD+  ++  I+ P++  Y+ G F  +     +YP +PPKV
Sbjct: 9   ELNDLARDPPAQCRAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHP I+  G++ L+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 68  AFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 273 QNNRRLFEQ 281
           + +R  + +
Sbjct: 128 KTDREKYNR 136

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 166 CTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID 224
            T EF +  D+   K   + P    Y  GKFV   +V   YP +PPK++ +T VYHPNI 
Sbjct: 22  ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81
Query: 225 -LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
            + G +CL+ILR  W PV+T+ S +  LQ L   P P DP + E A+    +R  F +  
Sbjct: 82  SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 141

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 166 CTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID 224
            T EF +  D+   K   + P    Y  GKFV   +V   YP +PPK++ +T VYHPNI 
Sbjct: 21  ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80
Query: 225 -LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
            + G +CL+IL+  W PV+T+ S +  LQ L   P P DP + E A+    +R  F +  
Sbjct: 81  SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 140

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 34  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 94  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 171 PNPDDLLSF-KLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
           P PD+++ +  +II P +  Y  G F    +    YP++PP VK  + ++HPN+   G +
Sbjct: 28  PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEI 87
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRG 289
           CL+IL+  W P   + SI+  +Q LF +PNP  P N EAA + ++++  + + V++ +  
Sbjct: 88  CLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147
Query: 290 GY 291
            +
Sbjct: 148 SW 149

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-GNVCLNILREDWK 239
            I  P+   Y  G F  +  +  +YP+ PPK+K  T ++HPNI  + G +CL++L+ +W 
Sbjct: 58  FIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWS 117
Query: 240 PVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 279
           P LTI + +  +Q L  +P P+DP + E A++ + N  LF
Sbjct: 118 PALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALF 157

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 32  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 91
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 92  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 34  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 94  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 33  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 92
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 93  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 36  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 95
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 96  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 168 TEFPNPDDLLSFKLIISPDEG-FYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE 226
           + FP  D+L  +   I    G  Y   ++  S +    YP+  P VK  TP YHPN+D +
Sbjct: 51  SAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQ 110
Query: 227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
           GN+ L+IL+E W  +  + +I+  +Q L  EPN + PLN  AAE+ +N
Sbjct: 111 GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P    T  P+ D+L  F++ I  P++  Y  G F     +  +YP E PKV+  T +YHP
Sbjct: 19  PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 78
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
           NID  G + L++L+ +W P L I +++  +Q L   PNP DPL  + AE
Sbjct: 79  NIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 31  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 90
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 91  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 33  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 92
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 93  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 170 FPNPDDLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
           FPN +DL   ++ I   EG  Y  G F     +G ++P  PPK    T ++HPN+   G 
Sbjct: 36  FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGE 95
Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKA 286
           +C+N+L+ DW   L I  ++  ++ L + PNPE  LN+EA  +L  N   +E+   +A
Sbjct: 96  ICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN---YEEYAARA 150

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
           P+  +   F ++I+ P +  +  G F     +   YP   PKV+  T +YHPN+D  G +
Sbjct: 29  PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 88
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           CL+IL++ W P L I +++  +Q L   PNP+DPL  + AE  + N
Sbjct: 89  CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 134

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 160 LNLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
           L+ P  C+   P  D++  ++  I+ P    Y  G F       P+YP +PPKV   T +
Sbjct: 17  LDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI 75
Query: 219 YHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
           YH NI+ +G +CL+IL+++W P LTI+ ++  +  L  + NP DPL    A     NR
Sbjct: 76  YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNR 133

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
           P+  +   F ++I+ P +  +  G F     +   YP   PKV+  T +YHPN+D  G +
Sbjct: 30  PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 89
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           CL+IL++ W P L I +++  +Q L   PNP+DPL  + AE  + N
Sbjct: 90  CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 135

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
           P+  +   F ++I+ P +  +  G F     +   YP   PKV+  T +YHPN+D  G +
Sbjct: 27  PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 86
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           CL+IL++ W P L I +++  +Q L   PNP+DPL  + AE  + N
Sbjct: 87  CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKP 240
           +I  P +  +  G F     +   YP   PKV+  T +YHPN+D  G +CL+IL++ W P
Sbjct: 43  VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSP 102
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
            L I +++  +Q L   PNP+DPL  + AE  + N
Sbjct: 103 ALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 137

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
           P+  +   F ++I+ P +  +  G F     +   YP   PKV+  T +YHPN+D  G +
Sbjct: 25  PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 84
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           CL+IL++ W P L I +++  +Q L   PNP+DPL  + AE  + N
Sbjct: 85  CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 130

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
           +LL+++ +I PD   Y  G F         YP +PPK+  +T +YHPNID +G VCL ++
Sbjct: 33  NLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 92
Query: 235 R-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
             E+WKP    + ++  L  L  +P PE PL  + AE    +R+ F +N ++
Sbjct: 93  SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEE 144

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
           +LL+++ +I PD   Y  G F         YP +PPK+  +T +YHPNID +G VCL ++
Sbjct: 31  NLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 90
Query: 235 R-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
             E+WKP    + ++  L  L  +P PE PL  + AE    +R+ F +N ++
Sbjct: 91  SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEE 142

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HP +   G
Sbjct: 34  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 94  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           L+D+  L+ P  C+   P  D++  ++  I+ P    Y  G F       P YP +PPKV
Sbjct: 57  LADIT-LDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKV 114
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YH NI+ +G +CL+IL+++W P LTI+ ++  +  L  + NP DPL    A   
Sbjct: 115 TFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174
Query: 273 QNNR 276
             NR
Sbjct: 175 MTNR 178

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 34  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN + P   EA  +   NR  +E+ V+
Sbjct: 94  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P    T  P+ D+L  F++ I  P++  Y  G F     +  +YP E PKV+  T +YHP
Sbjct: 19  PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 78
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
            ID  G + L++L+ +W P L I +++  +Q L   PNP DPL  + AE
Sbjct: 79  AIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 190 YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL----REDWKPVLTIN 245
           Y  G F     +   YP EPP+++  TP+YHPNID  G +CL++L    +  W+P L I 
Sbjct: 48  YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIA 107
Query: 246 SIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
           +++  +Q L  EPNP+DPL  + +   + N+  F +N ++
Sbjct: 108 TVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQ 147

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 34  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            VCL+IL E  DW+P +TI  I+ G+Q L  EPN + P   EA  +   NR  +E+ V+
Sbjct: 94  TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 31  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 90
Query: 228 NVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            V L+IL ED  W+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 91  TVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
           NPD   +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 31  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 90
Query: 228 NVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            V L+IL ED  W+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 91  TVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL------ 234
           L+I P +  Y  G F        +YP +PPK+K  + ++HPNID EGNVC++IL      
Sbjct: 39  LVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDD 98
Query: 235 -------REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAM 287
                   E W PV T+ +I+  +  +  +PN E P N +AA++ + N   F++ V + +
Sbjct: 99  KWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCV 158
Query: 288 R 288
           R
Sbjct: 159 R 159

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
           ++L +  ++ PD+  Y    F       P YP +PP +K  T +YHPN+D  G +CL I+
Sbjct: 33  NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 92
Query: 235 -REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK-AMRGG 290
             E+WKP      ++  L  L   PN  +PL  + A++L  N  LF +N ++  +R G
Sbjct: 93  SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
           ++L +  ++ PD+  Y    F       P YP +PP +K  T +YHPN+D  G +CL I+
Sbjct: 30  NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 89
Query: 235 -REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK-AMRGG 290
             E+WKP      ++  L  L   PN  +PL  + A++L  N  LF +N ++  +R G
Sbjct: 90  SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 147

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 175 DLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
           DL+++K+ I    +  +  G +  +      YP  PPK +   P++HPN+   G VCL+I
Sbjct: 43  DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 234 LRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
           L E+  WKP +TI  I+ G+Q L  +PN   P   EA  + + ++  +E+ V+   R
Sbjct: 103 LNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAR 159

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 175 DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
           DL  ++  I   EG  +  G +  + +    YP +PPKVK     YHPN+   G +CL+I
Sbjct: 39  DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 98
Query: 234 LRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
           L E  DW+P +T+  IV G+Q L   PNP  P  + A      N+  +++ V
Sbjct: 99  LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 150

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 175 DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
           DL  ++  I   EG  +  G +  + +    YP +PPKVK     YHPN+   G +CL+I
Sbjct: 37  DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 96
Query: 234 LRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
           L E  DW+P +T+  IV G+Q L   PNP  P  + A      N+  +++ V
Sbjct: 97  LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL------ 234
           LII P +  Y  G F        +YP  PPK+K  T ++HPN+D  G+VC++IL      
Sbjct: 53  LIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGED 112
Query: 235 -------REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
                   E W P+ T+ +I+  +  +  +PN + P N +AA+  + +R
Sbjct: 113 KYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 161

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
           I  P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G +CL+IL++ W  
Sbjct: 60  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 119
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 120 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
           I  P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G +CL+IL++ W  
Sbjct: 96  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
           I  P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G +CL+IL++ W  
Sbjct: 45  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 104
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 105 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
           I  P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G +CL+IL++ W  
Sbjct: 47  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 106
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 107 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
           I  P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G +CL+IL++ W  
Sbjct: 44  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 104 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 185 PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKPVLT 243
           P+   Y  G +     +  +YP   P +     + HPN+D   G+VCL+++ + W P+ +
Sbjct: 38  PNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYS 97
Query: 244 -INSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
            +N     L  L   PNP DPLN +AA +L  ++ ++E+ V++ ++
Sbjct: 98  LVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVK 143

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
           LI+ P++  +  G F  + SF +  +YP  PPK++    ++HPNI  +G VC++IL    
Sbjct: 43  LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 100
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
                     E W PV ++  I+  +  +  EPN E   N +A+++ +++R  F    +Q
Sbjct: 101 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 160
Query: 282 NVQKAM 287
            VQK++
Sbjct: 161 IVQKSL 166

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
           LI+ P++  +  G F  + SF +  +YP  PPK++    ++HPNI  +G VC++IL    
Sbjct: 45  LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 102
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
                     E W PV ++  I+  +  +  EPN E   N +A+++ +++R  F    +Q
Sbjct: 103 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 162
Query: 282 NVQKAM 287
            VQK++
Sbjct: 163 IVQKSL 168

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
           LI+ P++  +  G F  + SF +  +YP  PPK++    ++HPNI  +G VC++IL    
Sbjct: 42  LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 99
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
                     E W PV ++  I+  +  +  EPN E   N +A+++ +++R  F    +Q
Sbjct: 100 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 159
Query: 282 NVQKAM 287
            VQK++
Sbjct: 160 IVQKSL 165

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
           LI+ P++  +  G F  + SF +  +YP  PPK++    ++HPNI  +G VC++IL    
Sbjct: 39  LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 96
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
                     E W PV ++  I+  +  +  EPN E   N +A+++ +++R  F    +Q
Sbjct: 97  DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 156
Query: 282 NVQKAM 287
            VQK++
Sbjct: 157 IVQKSL 162

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 185 PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKPVLT 243
           P+   Y  G ++   ++  +YP + P +     + HPN+D   G+VCL+++ + W P+  
Sbjct: 47  PEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQ 106
Query: 244 INSIV-YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 280
           + +I    L  L   PNP DPLN +AA +L  +R  F+
Sbjct: 107 LENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFD 144

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL------ 234
           LI  P +  Y  G F    +   +YP  PPK+     + HPNI   G VC++IL      
Sbjct: 40  LIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDD 99
Query: 235 -------REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAM 287
                   E W PV ++  I+  +  +  EPN E   N +A  + ++NR  FE+ V+ ++
Sbjct: 100 PNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 175 DLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
           DL ++++ I  P   +Y  G F    K   +YP+ PP  +  T ++HPNI   G+VC++I
Sbjct: 36  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 234 LR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
           L              E W P   + +I+  +  L  EPN   P N +A+
Sbjct: 96  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 144

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 175 DLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
           DL ++++ I  P   +Y  G F    K   +YP+ PP  +  T ++HPNI   G+VC++I
Sbjct: 33  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 234 LR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
           L              E W P   + +I+  +  L  EPN   P N +A+
Sbjct: 93  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 141

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 190 YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIV 248
           Y  G +     +   YP + P +     ++HPNID   G VCL+++ + W  +  + +I 
Sbjct: 65  YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIF 124
Query: 249 YG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK 302
              L  L   PNP DPLN +AA +  +    ++Q +++     YI     E  LK
Sbjct: 125 ESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE-----YIQKYATEEALK 174

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 175 DLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNI-DLEGNVCL 231
           DL  ++ IIS P +  Y + +F    +V  +YP  PPK+   +  + H N+    G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 232 NILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
           NIL+ E+W PV  +   V+ +  L  EP  + PL+ +   +++
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 175 DLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNI-DLEGNVCL 231
           DL  ++ IIS P +  Y + +F    +V  +YP  PPK+   +  + H N+    G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 232 NILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
           NIL+ E+W PV  +   V+ +  L  EP  + PL+ +   +++
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 175 DLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNI-DLEGNVCL 231
           DL  ++ IIS P +  Y + +F    +V  +YP  PPK+   +  + H N+    G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 232 NILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
           NIL+ E+W PV  +   V+ +  L  EP  + PL+ +   +++
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 168 TEFPNPDDLLSFKLIISP-DEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE 226
           T  P  +D++ +++ I       ++   F  +      Y + PP VK  T  +HPN+D  
Sbjct: 44  TAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPH 103
Query: 227 -GNVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 279
            G  C++ L   E W    T++SI+  LQ +   P  E+P+N EAA +L  +  L+
Sbjct: 104 TGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY 159

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 189 FYRSGKFVFSFKVGPNYPHEPPKV--KCETPVYHPNIDLEGNVCLNILREDWKPVLTINS 246
            Y   KF   FK    YP + P+V    E    HP++   G++CL+IL EDW P L++ S
Sbjct: 67  LYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQS 126
Query: 247 IVYGL 251
           +   +
Sbjct: 127 VCLSI 131

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 182 IISPDEGFYRSGKFVFSFKV--GPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWK 239
           + +P +  Y      +   V    +YPHEPP V+  TPVY P +  EG +C  ++ + W 
Sbjct: 56  VKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWT 115
Query: 240 PVLTINSIV-YGLQYLF--LEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGG 290
           P    + ++   L  +F   +   +D +N EA   L+     F Q+    +R G
Sbjct: 116 PDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEK----FPQDFAARVRRG 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	4e-82
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	1e-80
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	2e-05
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	2e-73
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-05
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	5e-58
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	1e-57
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	1e-50
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	9e-42
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	2e-39
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	2e-38
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	3e-38
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	4e-38
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	5e-38
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	7e-38
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	9e-38
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	2e-37
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-37
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	3e-37
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	4e-37
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	5e-37
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	8e-37
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	1e-36
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-36
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	2e-36
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	3e-36
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-36
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	4e-36
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	5e-36
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-35
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	7e-35
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	2e-34
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	3e-34
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	3e-34
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	6e-34
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	7e-34
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-32
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	6e-32
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	8e-32
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	2e-30
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	2e-30
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-30
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	3e-28
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	3e-27
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	7e-27
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	8e-27
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	2e-24
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	5e-24
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	3e-22
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-21
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	7e-21
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	4e-18

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  244 bits (624), Expect = 4e-82
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 14  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 73

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 74  TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 133

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 134 RRLFEQNVQRSMRGGYIGSTYFERCLK 160

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  240 bits (615), Expect = 1e-80
 Identities = 128/147 (87%), Positives = 137/147 (93%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 34  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 93

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNV LNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 94  TMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 153

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 154 RRLFEQNVQRSMRGGYIGSTYFERCLK 180

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 28/48 (58%), Positives = 30/48 (62%), Gaps = 7/48 (14%)

Query: 33 MIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITK--AELELPTYSG 78
          MIKLFSLKQQKK+ E  +      KKASAAQLRI K   EL LP    
Sbjct: 3  MIKLFSLKQQKKEEEKGS-----SKKASAAQLRIQKDINELNLPKTCD 45

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  223 bits (570), Expect = 2e-73
 Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 6/152 (3%)

Query: 156 DLNELNLPKTCTT------EFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEP 209
           DL+ L+LP T T       +  +       ++I+ PDEG+Y  G   F+      YP EP
Sbjct: 37  DLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEP 96

Query: 210 PKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
           PKV C   ++HPNIDL+GNVCLNILREDW P L + SI+ GL +LFLEPNP DPLNK+AA
Sbjct: 97  PKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAA 156

Query: 270 EVLQNNRRLFEQNVQKAMRGGYIGSVYFERCL 301
           ++L    + F + V+  M GG I  V ++  +
Sbjct: 157 KLLCEGEKEFAEAVRLTMSGGSIEHVKYDNIV 188

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 33 MIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITK--AELELP 74
          M+KL  L+++K+  +      + Q   SAA++R+ +    L+LP
Sbjct: 3  MLKLRQLQKKKQ--KENENSSSIQPNLSAARIRLKRDLDSLDLP 44

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  182 bits (465), Expect = 5e-58
 Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 9/142 (6%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           ++ EL  NLP TC   FP+P+ L  F+L ++PDEG+Y+ GKF F  +V   Y   PPKVK
Sbjct: 22  EVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVK 81

Query: 214 CETPVYHPNIDLEGNVCLNILR------EDWKPVLTINSIVYGLQYLFLE-PNPEDPLNK 266
           C T ++HPNI   G +CL++LR        W P  T+  +V+GL  LF +  N +DPLN 
Sbjct: 82  CLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNI 141

Query: 267 EAAEVLQNNRRLFEQNVQKAMR 288
           EAAE    ++  F   V   ++
Sbjct: 142 EAAEHHLRDKEDFRNKVDDYIK 163

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  181 bits (462), Expect = 1e-57
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 6/138 (4%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRS--GKFVFSFKVGPNYPHEPPKV 212
           + N    P +      + D + ++ L +  P +  Y      +  S     +YPHEPP V
Sbjct: 29  EANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV 88

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSI---VYGLQYLFLEPNPEDPLNKEAA 269
           +  TPVY P +  EG +C  ++ + W P    + +   V    +   +   +D +N EA 
Sbjct: 89  RFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEAR 148

Query: 270 EVLQNNRRLFEQNVQKAM 287
             L+   + F   V++  
Sbjct: 149 HYLEKFPQDFAARVRRGR 166

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  163 bits (415), Expect = 1e-50
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           +L +L    P        +  ++L +  ++ PD+  Y    F       P YP +PP +K
Sbjct: 12  ELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIK 71

Query: 214 CETPVYHPNIDLEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
             T +YHPN+D  G +CL I+  E+WKP      ++  L  L   PN  +PL  + A++L
Sbjct: 72  FTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLL 131

Query: 273 QNNRRLFEQNVQK 285
             N  LF +N ++
Sbjct: 132 TQNPELFRKNAEE 144

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  140 bits (356), Expect = 9e-42
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           L ++ +    K       +  +LL+++ +I PD   Y  G F         YP +PPK+ 
Sbjct: 11  LEEIRK-CGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKIT 69

Query: 214 CETPVYHPNIDLEGNVCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
            +T +YHPNID +G VCL ++  + WKP    + ++  L  L  +P PE PL  + AE  
Sbjct: 70  FKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 129

Query: 273 QNNRRLFEQNVQ 284
             +R+ F +N +
Sbjct: 130 SKDRKKFCKNAE 141

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  134 bits (340), Expect = 2e-39
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           ++ L   + P      FPN +DL   ++ I  P+   Y  G F     +G ++P  PPK 
Sbjct: 22  VTTLTA-DPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 79

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T ++HPN+   G +C+N+L+ DW   L I  ++  ++ L + PNPE  LN+EA  +L
Sbjct: 80  YFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 139

Query: 273 QNNRRLFEQNVQ 284
             N   +    +
Sbjct: 140 LENYEEYAARAR 151

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  131 bits (333), Expect = 2e-38
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +   L    P       P P++   F ++I+ PD   Y  G +     +   YP EPPKV
Sbjct: 9   ETQNLANEPPPGIMA-VPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
           +  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   P P+DPL+ + AE  
Sbjct: 68  RFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127

Query: 273 QNNRRLFEQNVQ 284
           + ++   E   +
Sbjct: 128 KQDKNDAEHVAR 139

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  131 bits (332), Expect = 3e-38
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 4/132 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +  +L  +     T   P+ D+L  F++ I  P++  Y  G F     +  +YP E PKV
Sbjct: 13  ETEKLVSDPVPGITA-EPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV 71

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
           +  T +YHPNID  G +CL++L+ +W P L I +++  +Q L   PNP DPL  + AE  
Sbjct: 72  RFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW 131

Query: 273 QNNRRLFEQNVQ 284
             N +  +   +
Sbjct: 132 IKNEQGAKAKAR 143

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  131 bits (331), Expect = 4e-38
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +   L            P+  +   F ++I+ P +  +  G F     +   YP   PKV
Sbjct: 13  ETQRLLAEPVPGIKA-EPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV 71

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
           +  T +YHPN+D  G +CL+IL++ W P L I +++  +Q L   PNP+DPL  + AE  
Sbjct: 72  RFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW 131

Query: 273 QNNRRLFEQNVQ 284
           + N     +  +
Sbjct: 132 KTNEAQAIETAR 143

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  131 bits (331), Expect = 5e-38
 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
            P  ++++ +  +I  PD+  +  G F  S +   +YP++PP V+  + ++HPNI  +G+
Sbjct: 27  APQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGS 86

Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
           +CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   ++R + + V+ 
Sbjct: 87  ICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRD 143

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  131 bits (331), Expect = 7e-38
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
            P PD+++ +  +II P +  Y  G F    +    YP++PP VK  + ++HPN+   G 
Sbjct: 27  SPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGE 86

Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
           +CL+IL+  W P   + SI+  +Q LF +PNP  P N EAA + ++++  + + V++
Sbjct: 87  ICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  130 bits (329), Expect = 9e-38
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEG 227
               ++    +  I+ P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G
Sbjct: 34  DLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93

Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +CL+IL++ W   +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 94  AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  129 bits (327), Expect = 2e-37
 Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L +L  + P  C+   P  DDL  ++  I  P E  Y+ G F  +     +YP +PPKV
Sbjct: 12  ELQDLGRDPPAQCSA-GPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKV 70

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 71  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130

Query: 273 QNNRRLFEQNVQK-----AM 287
           + +R  + Q  ++     AM
Sbjct: 131 KTDRERYNQLAREWTQKYAM 150

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  129 bits (326), Expect = 2e-37
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           ++  +  +     T EF +  D+   K   + P    Y  GKFV   +V   YP +PPK+
Sbjct: 9   EIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKM 68

Query: 213 KCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           + +T VYHPNI  + G +CL+IL+  W PV+T+ S +  LQ L   P P DP + E A+ 
Sbjct: 69  QFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH 128

Query: 272 LQNNRRLFEQNVQ 284
              +R  F +   
Sbjct: 129 YLRDRESFNKTAA 141

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  131 bits (330), Expect = 3e-37
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           ++  +  +     T EF +  D+   K     P    Y  GKFV   +V   YP +PPK+
Sbjct: 10  EIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKM 69

Query: 213 KCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           + +T VYHPNI  + G +CL+ILR  W PV+T+ S +  LQ L   P P DP + E A+ 
Sbjct: 70  QFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH 129

Query: 272 LQNNRRLFEQNVQ 284
              +R  F +   
Sbjct: 130 YLRDRESFNKTAA 142

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  129 bits (326), Expect = 4e-37
 Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 9/140 (6%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I  P++  Y+ G F  +     +YP +PPKV
Sbjct: 27  ELNDLARDPPAQCSA-GPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 85

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 86  AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145

Query: 273 QNNRRLFEQNVQK-----AM 287
           + +R  + +  ++     AM
Sbjct: 146 KTDREKYNRIAREWTQKYAM 165

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  128 bits (325), Expect = 5e-37
 Identities = 46/132 (34%), Positives = 79/132 (59%), Gaps = 4/132 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I+ P++  Y  G F  +     +YP +PPKV
Sbjct: 29  ELNDLSKDPPTNCSA-GPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKV 87

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+ +G +CL+IL++ W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 88  NFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLY 147

Query: 273 QNNRRLFEQNVQ 284
           +++R  ++Q  +
Sbjct: 148 KSDRMRYDQTAR 159

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  129 bits (326), Expect = 8e-37
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEG 227
               ++    +  I+ P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G
Sbjct: 31  DLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90

Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +CL+IL++ W   +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 91  AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  128 bits (324), Expect = 1e-36
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 156 DLNELNL--PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L ++ L  P  C+   P  D++  ++  I  P    Y  G F       P YP +PPKV
Sbjct: 56  ELADITLDPPPNCSA-GPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKV 114

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YH NI+ +G +CL+IL+++W P LTI+ ++  +  L  + NP DPL    A   
Sbjct: 115 TFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174

Query: 273 QNNRRLFEQNVQK 285
             NR   ++  ++
Sbjct: 175 MTNRAEHDRMARQ 187

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  127 bits (321), Expect = 2e-36
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 8/136 (5%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L+ L    P   T  + + D +   +  I+      Y  G F     +   YP EPP++
Sbjct: 12  ELHMLATEPPPGITC-WQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQI 70

Query: 213 KCETPVYHPNIDLEGNVCLNIL----REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
           +  TP+YHPNID  G +CL++L    +  W+P L I +++  +Q L  EPNP+DPL  + 
Sbjct: 71  RFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADI 130

Query: 269 AEVLQNNRRLFEQNVQ 284
           +   + N+  F +N +
Sbjct: 131 SSEFKYNKPAFLKNAR 146

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  128 bits (324), Expect = 2e-36
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L ++     +          +   +   I  P+   Y  G F  +  +  +YP+ PPK+
Sbjct: 31  ELKDIENENVQEIDA-HIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKI 89

Query: 213 KCETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           K  T ++HPNI  + G +CL++L+ +W P LTI + +  +Q L  +P P+DP + E A++
Sbjct: 90  KFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKM 149

Query: 272 LQNNRRLFEQNVQ 284
            + N  LF +   
Sbjct: 150 YKENHALFVKTAS 162

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  126 bits (319), Expect = 3e-36
 Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 2/117 (1%)

Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
           FP+ D+L  +   +  P +  Y S K+  + +   +YP++PP VK  TP +HPN+D  GN
Sbjct: 32  FPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91

Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
           +CL+IL+E+W     + +I+  LQ L  EPN   PLN +AA+ + +N+  +++ + +
Sbjct: 92  ICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAAD-MWSNQTEYKKVLHE 147

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  127 bits (321), Expect = 3e-36
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-G 227
                D+  ++  I+ P    Y  G F     + P+YP+ PPK+K  T ++HPNI  + G
Sbjct: 68  QIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG 127

Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +CL+IL+ +W P LTI + +  +Q +  +P P DP + E A+++  N  LF Q  +
Sbjct: 128 AICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  126 bits (318), Expect = 4e-36
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
             D  +  +      E  N      F ++   P+   Y  G +     +  +YP   P +
Sbjct: 8   QCDFTK-LIMAGYDLE-LNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65

Query: 213 KCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIVY-GLQYLFLEPNPEDPLNKEAAE 270
                + HPN+D   G+VCL+++ + W P+ ++ ++    L  L   PNP DPLN +AA 
Sbjct: 66  GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAAS 125

Query: 271 VLQNNRRLFEQNVQ 284
           +L  ++ ++E+ V+
Sbjct: 126 LLMKDKNIYEEKVK 139

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  128 bits (324), Expect = 5e-36
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEG 227
               ++    +  I+ P +  Y  G++    K+   YP  PPKV+  T ++HPNI  + G
Sbjct: 83  DLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142

Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            +CL+IL++ W   +T+ +++  LQ L     P+DP +   A   + N  +F+Q  +
Sbjct: 143 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  124 bits (314), Expect = 3e-35
 Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 156 DLNELNL--PKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L  L +   K  +  FP  D+L  +   I       Y   ++  S +    YP+  P V
Sbjct: 38  ELMTLMMSGDKGISA-FPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTV 96

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
           K  TP YHPN+D +GN+ L+IL+E W  +  + +I+  +Q L  EPN + PLN  AAE L
Sbjct: 97  KFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAE-L 155

Query: 273 QNNRRLFEQNVQK 285
             N   F++ +Q+
Sbjct: 156 WKNPTAFKKYLQE 168

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  122 bits (309), Expect = 7e-35
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 167 TTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL 225
             +     DL  ++  I   +   +  G +  + +    YP +PPKVK     YHPN+  
Sbjct: 29  VKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP 88

Query: 226 EGNVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
            G +CL+IL E  DW+P +T+  IV G+Q L   PNP  P  + A      N+  +++ V
Sbjct: 89  SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148

Query: 284 QK 285
             
Sbjct: 149 LL 150

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  122 bits (308), Expect = 2e-34
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-G 227
            P  +D++ ++  I       ++   F  +      Y + PP VK  T  +HPN+D   G
Sbjct: 46  KPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTG 105

Query: 228 NVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
             C++ L   E W    T++SI+  LQ +   P  E+P+N EAA +L  +  L+   ++ 
Sbjct: 106 QPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRL 165

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  121 bits (305), Expect = 3e-34
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 167 TTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL 225
                   DL+++K  I    +  +  G +  +      YP  PPK +   P++HPN+  
Sbjct: 35  CKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP 94

Query: 226 EGNVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
            G VCL+IL E+  WKP +TI  I+ G+Q L  +PN   P   EA  + + ++  +E+ V
Sbjct: 95  SGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRV 154

Query: 284 QK 285
           + 
Sbjct: 155 RA 156

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  121 bits (305), Expect = 3e-34
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 167 TTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL 225
           T       +L++++  I       +  G F        +YP  PPK K E P++HPN+  
Sbjct: 32  TKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP 91

Query: 226 EGNVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
            G VCL+IL E  DW+P +TI  I+ G+Q L  EPN + P   EA  +   NR  +E+ V
Sbjct: 92  SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRV 151

Query: 284 QK 285
           + 
Sbjct: 152 RA 153

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  120 bits (304), Expect = 6e-34
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
             D   L    +    +P+ D +  F +    P+   Y  G ++   ++  +YP + P +
Sbjct: 18  EMDYMRL--CNSTRKVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSI 74

Query: 213 KCETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIVY-GLQYLFLEPNPEDPLNKEAAE 270
                + HPN+D   G+VCL+++ + W P+  + +I    L  L   PNP DPLN +AA 
Sbjct: 75  GFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134

Query: 271 VLQNNRRLFEQNVQ 284
           +L  +R  F+  ++
Sbjct: 135 LLHADRVGFDALLR 148

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  120 bits (304), Expect = 7e-34
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 174 DDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCL 231
             L  F +    P    Y  G +     +   YP + P +     ++HPNID   G VCL
Sbjct: 48  GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCL 107

Query: 232 NILREDWKPVLTINSIVY-GLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
           +++ + W  +  + +I    L  L   PNP DPLN +AA +  +    ++Q +++
Sbjct: 108 DVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 162

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  122 bits (307), Expect = 3e-32
 Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +LN+L  + P  C+   P  DD+  ++  I  P++  Y+ G F  +     +YP +PPKV
Sbjct: 11  ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T +YHPNI+  G++ L+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + 
Sbjct: 70  AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129

Query: 273 QNNRRLFEQNVQKAM 287
           + +R  + +  ++  
Sbjct: 130 KTDREKYNRIAREWT 144

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  115 bits (290), Expect = 6e-32
 Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 16/148 (10%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           +++  +L  N P+       N ++   ++ LI+ P++  +  G F        +YP  PP
Sbjct: 9   MAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPP 68

Query: 211 KVKCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLE 257
           K++    ++HPNI  +G VC++IL              E W PV ++  I+  +  +  E
Sbjct: 69  KMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128

Query: 258 PNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
           PN E   N +A+++ +++R  F +  ++
Sbjct: 129 PNDESGANVDASKMWRDDREQFYKIAKQ 156

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  115 bits (290), Expect = 8e-32
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 5/119 (4%)

Query: 172 NPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNIDLE-GN 228
           +  DL  ++ +I  P +  Y + +F    +V  +YP  PPK+   +  + H N+    G 
Sbjct: 43  DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102

Query: 229 VCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ-NNRRLFEQNVQK 285
           +CLNIL+ + W PV  +   V+ +  L  EP  + PL+ +   +++  +   ++  V+ 
Sbjct: 103 ICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY 161

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  112 bits (282), Expect = 2e-30
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           L +L  L     +       +  DL +++  I  P   +Y  G F    K   +YP+ PP
Sbjct: 13  LLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP 72

Query: 211 KVKCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLE 257
             +  T ++HPNI   G+VC++IL              E W P   + +I+  +  L  E
Sbjct: 73  AFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132

Query: 258 PNPEDPLNKEAAEVLQNNRRLFEQ 281
           PN   P N +A+ + +  +    +
Sbjct: 133 PNTFSPANVDASVMYRKWKESKGK 156

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  111 bits (280), Expect = 2e-30
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 14/137 (10%)

Query: 163 PKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
           P        + +++  +  LI  P +  Y  G F    +   +YP  PPK+     + HP
Sbjct: 21  PPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80

Query: 222 NIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
           NI   G VC++IL              E W PV ++  I+  +  +  EPN E   N +A
Sbjct: 81  NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDA 140

Query: 269 AEVLQNNRRLFEQNVQK 285
             + ++NR  FE+ V+ 
Sbjct: 141 CILWRDNRPEFERQVKL 157

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  111 bits (280), Expect = 2e-30
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 154 LSDLNELNL--PKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
              L ELN    +  +    + +DL  ++ LII P +  Y  G F        +YP  PP
Sbjct: 23  RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 82

Query: 211 KVKCETPVYHPNIDLEGNVCLNIL-------------REDWKPVLTINSIVYGLQYLFLE 257
           K+K  T ++HPN+D  G+VC++IL              E W P+ T+ +I+  +  +  +
Sbjct: 83  KMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142

Query: 258 PNPEDPLNKEAAEVLQNNRRL-FEQNVQK 285
           PN + P N +AA+  + +R   F++ V +
Sbjct: 143 PNGDSPANVDAAKEWREDRNGEFKRKVAR 171

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  105 bits (263), Expect = 3e-28
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL---IISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           L    +   P++C+    + DD+   K    I+ P    + +  +  S   GPNYP  PP
Sbjct: 15  LEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP 74

Query: 211 KVKCETPVYHPNIDLE-GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
           KV   + +  P ++   G V  +     DWK   T+ +++  L+     P  +     + 
Sbjct: 75  KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKE 134

Query: 269 AE 270
            E
Sbjct: 135 GE 136

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  102 bits (256), Expect = 3e-27
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPP 210
             +L+    N P  CT    +P+++  + +     +   Y +  +        +YP +PP
Sbjct: 12  QKELHNFLNNPPINCTL-DVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP 70

Query: 211 KVKCET-PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPED 262
            V     P  H ++   G++CL++L +D+ P L+I+ +V  +  +      + 
Sbjct: 71  IVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  102 bits (255), Expect = 7e-27
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           L    + N+ +  +    + DD+        I       + +  +  +     NYP  PP
Sbjct: 30  LERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPP 89

Query: 211 KVKCETPVYHPNIDLEGNVCLNIL--REDWKPVLTINSIVYGL-QYLFLEPNPEDPLNKE 267
            VK +T +    +D  G V  N L   ++W    TI +I+  L Q +    N   P   E
Sbjct: 90  TVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNE 149

Query: 268 AAEVLQN 274
                 N
Sbjct: 150 GEVYSNN 156

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  101 bits (253), Expect = 8e-27
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPP 210
             +LN    N P  CT    +P ++  + +     +   Y +  +        NYP +PP
Sbjct: 26  QKELNNFLKNPPINCTI-DVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPP 84

Query: 211 KVKCET-PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPE 261
            V     P  H ++   G++CL++L +D+ P L+I+ ++  +  +      +
Sbjct: 85  IVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKEK 136

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 95.9 bits (239), Expect = 2e-24
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 154 LSDLNELNL-PKTCTTEFPNPDD----LLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPH 207
           L +L E        T  +   DD    L  +  +II P    Y +  +    + GP YP 
Sbjct: 31  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 90

Query: 208 EPPKVKCETPVYHPNIDLEGNV----CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDP 263
            PP V+  T +    ++    V     +++L   W+   +I  ++  L+ L +       
Sbjct: 91  APPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKL 149

Query: 264 LNKEAAEVLQN 274
                 +   N
Sbjct: 150 PQPPEGQCYSN 160

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 94.8 bits (236), Expect = 5e-24
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 154 LSDLNELNL-PKTCTTEFPNPDD----LLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPH 207
           L +L E        T  +   DD    L  +  +II P    Y +  +    + GP YP 
Sbjct: 41  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 100

Query: 208 EPPKVKCETPVYHPNIDLEGNV----CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDP 263
            PP V+  T +    ++    V     +++L   W+   +I  ++  L+ L +       
Sbjct: 101 APPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKL 159

Query: 264 LNKEAAEVLQN 274
                 +   N
Sbjct: 160 PQPPEGQCYSN 170

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 88.9 bits (221), Expect = 3e-22
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 154 LSDLNEL--NLPKTCTTE-FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEP 209
             +L  L  + P   T       + +  +   +       Y   KF   FK    YP + 
Sbjct: 28  QKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDS 87

Query: 210 PKVK--CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYL 254
           P+V    E    HP++   G++CL+IL EDW P L++ S+   +  +
Sbjct: 88  PQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISM 134

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 89.2 bits (221), Expect = 1e-21
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 171 PNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPN-IDLEGNV 229
            +PD  L   L I  ++        + +F    N+P +PP V+   PV     +   G +
Sbjct: 69  VDPDSPLHSDLQILKEK--EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 126

Query: 230 CLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE-VLQNNRRLFEQNVQ 284
           C+ +L +  W    +I S++  +    ++            +  L   ++ +   VQ
Sbjct: 127 CMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 183

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 87.1 bits (216), Expect = 7e-21
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 5/120 (4%)

Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
            P P ++L +  ++  P+   Y  G +         +P +PP +   TP      +    
Sbjct: 37  EPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLC 96

Query: 229 V-CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPL---NKEAAEVLQNNRRLFEQNVQ 284
           +   +   + W P  ++++I+ GL    +E  P       +      L      F    +
Sbjct: 97  LSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDK 156

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 82.0 bits (202), Expect = 4e-18
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 154 LSDLNEL--NLPKTCT---TEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPH 207
             +   L  +LP + +       + + L   K LI  P +  Y +G F F      +YP 
Sbjct: 82  AQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPS 141

Query: 208 EPPKVKCETPVYH-----PNIDLEGNVCLNILR-------EDWKP-VLTINSIVYGLQYL 254
            PP V  ET   H     PN+  +G VCL+IL        E W P   +   ++  +Q L
Sbjct: 142 SPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSL 201

Query: 255 FLEPNP--EDPL--NKEAAEVLQNNRRLFEQNVQ 284
            L   P   +P             + R ++ N++
Sbjct: 202 ILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIR 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.84
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.69
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.41
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.36
1tt5_E	26	Ubiquitin-conjugating enzyme E2 M; cell cycle, lig	97.76
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	92.0
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	90.91
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	90.67
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	88.36
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	85.56
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	84.95
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	83.6
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	82.57
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	81.7

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.5e-50  Score=353.73  Aligned_cols=147  Identities=87%  Similarity=1.477  Sum_probs=143.6

Q ss_pred             HHhccCCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCcEEeccCC
Q psy16981        156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR  235 (302)
Q Consensus       156 EL~eL~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~VCL~iL~  235 (302)
                      ||++|++|.++.+.+|+++|+++|+++|||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus        34 El~~l~~~~~i~~~~p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~  113 (180)
T 2nvu_C           34 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR  113 (180)
T ss_dssp             HHHTCCCCTTEEEECSSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGT
T ss_pred             HHHhcCCCCCeEEEecccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEccccc
Confidence            99999989999876789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCcccccccC
Q psy16981        236 EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK  302 (302)
Q Consensus       236 e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~~f~~~~~  302 (302)
                      ++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++|++++++|.+++++||+|++
T Consensus       114 ~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~~~~~~~~~~~~  180 (180)
T 2nvu_C          114 EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCLK  180 (180)
T ss_dssp             TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEEETTEEECCCBC
T ss_pred             ccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCCcCccccchhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999985

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=2.5e-49  Score=351.64  Aligned_cols=147  Identities=48%  Similarity=0.925  Sum_probs=142.7

Q ss_pred             HHhccCCCCCeEEec---cCCCCce---EEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCcE
Q psy16981        156 DLNELNLPKTCTTEF---PNPDDLL---SFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV  229 (302)
Q Consensus       156 EL~eL~lP~~~~~~~---p~~ddl~---~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~V  229 (302)
                      ||++|.+|.++.+.+   |+++|++   +|+++|+|++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+|+|
T Consensus        37 El~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~i  116 (190)
T 3o2u_A           37 DLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNV  116 (190)
T ss_dssp             HHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBB
T ss_pred             HHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeE
Confidence            999999888887764   8999999   9999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCcccccccC
Q psy16981        230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK  302 (302)
Q Consensus       230 CL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~~f~~~~~  302 (302)
                      |+++|.++|+|+++|.+||.+|++||.+||+++|+|.+||++|++|+++|.++||+++++|++++++|++|++
T Consensus       117 Cl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~~~~~~~~~~~  189 (190)
T 3o2u_A          117 CLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIEHVKYDNIVS  189 (190)
T ss_dssp             CCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEETTEECCBCCC
T ss_pred             echhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCCCCcccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-46  Score=325.16  Aligned_cols=156  Identities=83%  Similarity=1.394  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        147 FHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      ..+.+||++||++|++|.++.+.+|+++|+++|+++|||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   84 (160)
T 1y8x_A            5 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLE   84 (160)
T ss_dssp             CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             cHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCC
Confidence            45789999999999989999876689999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCcccccccC
Q psy16981        227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK  302 (302)
Q Consensus       227 G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~~f~~~~~  302 (302)
                      |.||+++|+++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+++++|++++++|++|++
T Consensus        85 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~~~~~~~~~~~~  160 (160)
T 1y8x_A           85 GNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCLK  160 (160)
T ss_dssp             CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEETTEEECCCBC
T ss_pred             CeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCccCCcccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999985

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=6.3e-43  Score=299.42  Aligned_cols=145  Identities=33%  Similarity=0.663  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+.+||++||++|  ++|.++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~~i~-~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (151)
T 4gpr_A            3 AMAMRRIQKELREIQQDPPCNCS-AGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI   81 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEE-EEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEE-EEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence            35789999999999  6788886 468889999999999 8999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        224 DLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       224 d~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      +.+|+||+++|.++|+|+++|.+||.+|++||.+||+++|+|.|||++|++|+++|.++||+++++++.
T Consensus        82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~  150 (151)
T 4gpr_A           82 NKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR  150 (151)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999998764

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=9.6e-43  Score=297.69  Aligned_cols=143  Identities=30%  Similarity=0.598  Sum_probs=135.9

Q ss_pred             HHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        150 CCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       150 ~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      .+||++|+++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~-~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   81 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIM-AVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   81 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEE-EEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence            47999999999  6788886 467889999999998 9999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       227 G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      |+||+++|+++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+++++++..
T Consensus        82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999999999999999988754

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-42  Score=302.55  Aligned_cols=146  Identities=32%  Similarity=0.675  Sum_probs=137.2

Q ss_pred             chHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        145 TLFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       145 ~l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      ....+.+||++|+++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus        18 ~~~~~~~RL~kEl~~l~~~~~~gi~-~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP   96 (166)
T 2ayv_A           18 YFQGALKRINKELNDLSKDPPTNCS-AGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHP   96 (166)
T ss_dssp             -CTTHHHHHHHHHHHHHHSCCTTEE-EEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred             cCcHHHHHHHHHHHHHHhCCCCCEE-EEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCC
Confidence            3345789999999999  6788886 568889999999999 89999999999999999999999999999999999999


Q ss_pred             cccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       222 NId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      ||+.+|+||+++|+++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+++++++
T Consensus        97 NI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A           97 NINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998753

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.8e-42  Score=296.64  Aligned_cols=145  Identities=27%  Similarity=0.663  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++|+++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         4 ~a~~RL~~E~~~l~~~~~~~i~-~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (152)
T 2aak_A            4 PARKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY   82 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEE-EEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCC
Confidence            4678999999999  5777886 568889999999988 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      .+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||++++++...
T Consensus        83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            999999999999999999999999999999999999999999999999999999999999999988754

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2.7e-42  Score=298.81  Aligned_cols=144  Identities=24%  Similarity=0.538  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++||++|  ++|.++.+...+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~   82 (164)
T 3h8k_A            3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY   82 (164)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCC
Confidence            4689999999999  67888875433455999999999 89999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        225 LEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       225 ~~G~VCL~iL~-------------e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      .+|+||+++|.             ++|+|+++|.+||.+|++||.+||+++|+|.+||.+|++|+++|+++||++++++.
T Consensus        83 ~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~  162 (164)
T 3h8k_A           83 PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL  162 (164)
T ss_dssp             TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            99999999997             78999999999999999999999999999999999999999999999999998763

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.3e-43  Score=299.74  Aligned_cols=144  Identities=27%  Similarity=0.540  Sum_probs=134.6

Q ss_pred             HHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        150 CCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       150 ~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      .+||++||++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+
T Consensus         7 ~~RL~kEl~~l~~~~~~~i~-~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   85 (154)
T 2c2v_B            7 PRRIIKETQRLLAEPVPGIK-AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL   85 (154)
T ss_dssp             CHHHHHHHHHHHHSCCTTEE-EEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEE-EEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccC
Confidence            47999999998  6788886 468888999999999 9999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       227 G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      |+||+++|+++|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|.++||+|+++++...
T Consensus        86 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~  153 (154)
T 2c2v_B           86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN  153 (154)
T ss_dssp             CBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999987653

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=2.2e-42  Score=295.54  Aligned_cols=142  Identities=34%  Similarity=0.685  Sum_probs=135.4

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +.+||++|+++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus         5 ~~~RL~kEl~~l~~~~~~~~~-~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   83 (150)
T 1z2u_A            5 ALKRIQKELQDLGRDPPAQCS-AGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS   83 (150)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEE-EEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC
Confidence            568999999999  6788886 467889999999999 899999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        226 EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       226 ~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      +|+||+++|+++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+++++++
T Consensus        84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a  149 (150)
T 1z2u_A           84 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  149 (150)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999998865

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-42  Score=299.25  Aligned_cols=144  Identities=28%  Similarity=0.594  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+.+||++||++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus        12 ~~~~~RL~kEl~~l~~~~~~gi~-~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   90 (158)
T 1zdn_A           12 PHIIRLVYKEVTTLTADPPDGIK-VFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEE-EEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEE-EEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCC
Confidence            46789999999999  6788886 468889999999998 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        224 DLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       224 d~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      +.+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|.++||+|+++++
T Consensus        91 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           91 GANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             CTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999998753

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=3.8e-42  Score=299.12  Aligned_cols=144  Identities=32%  Similarity=0.672  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+.+||++|+++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus        18 ~~~~~RL~kEl~~l~~~~~~gi~-~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV   96 (165)
T 2c4o_A           18 SMALKRIHKELNDLARDPPAQCS-AGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI   96 (165)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTEE-EEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEE-EEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcC
Confidence            45789999999999  5778886 468889999999999 8999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        224 DLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       224 d~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      +.+|+||+++|+++|+|+++|.+||.+|++||.+||+++|+|.+||++|++|+++|.++||+++++++
T Consensus        97 ~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a  164 (165)
T 2c4o_A           97 NSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA  164 (165)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred             CCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998875

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-42  Score=301.40  Aligned_cols=145  Identities=28%  Similarity=0.647  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++||++|  ++|.++. +.|.++|+++|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+||||||+
T Consensus         4 ~a~~RL~kEl~~l~~~~~~gi~-~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~   82 (169)
T 1ayz_A            4 PARRRLMRDFKRMKEDAPPGVS-ASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   82 (169)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEE-EEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCC
Confidence            4678999999999  5788886 468889999999988 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      .+|+||+++|+++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||++++++...
T Consensus        83 ~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~  151 (169)
T 1ayz_A           83 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED  151 (169)
T ss_dssp             TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999987643

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=2.9e-42  Score=299.07  Aligned_cols=144  Identities=27%  Similarity=0.524  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++|+++|  ++|.++.+...+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         4 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~   83 (165)
T 2ucz_A            4 TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY   83 (165)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCC
Confidence            5779999999999  57888875433457999999988 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccC-------------CCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        225 LEGNVCLNIL-------------REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       225 ~~G~VCL~iL-------------~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      .+|+||+++|             .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||++++++.
T Consensus        84 ~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~  163 (165)
T 2ucz_A           84 PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSL  163 (165)
T ss_dssp             TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred             CCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            9999999999             689999999999999999999999999999999999999999999999999998864

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.6e-42  Score=297.67  Aligned_cols=147  Identities=29%  Similarity=0.583  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+.+||++||++|  ++|.++.+ .++++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~gi~~-~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv   81 (169)
T 1yh2_A            3 MQRASRLKRELHMLATEPPPGITC-WQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   81 (169)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEE-EESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEE-EeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence            35778999999999  67888864 68889999999988 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCC----CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        224 DLEGNVCLNILR----EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       224 d~~G~VCL~iL~----e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      +.+|+||+|+|+    ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+++++++...
T Consensus        82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  156 (169)
T 1yh2_A           82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK  156 (169)
T ss_dssp             CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence            999999999998    89999999999999999999999999999999999999999999999999999888653

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=1.8e-42  Score=295.74  Aligned_cols=142  Identities=31%  Similarity=0.547  Sum_probs=133.5

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCC-CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPD-DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~d-dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      +.+||++|+++|  ++|.++.+ .|.++ |+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~-~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~   80 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITL-EFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   80 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEE-EESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhCCCCCEEE-EECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence            357999999999  57788865 55555 999999999 99999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        225 L-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       225 ~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      . +|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus        81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a  148 (149)
T 1fxt_A           81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred             CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            8 999999999999999999999999999999999999999999999999999999999999998864

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=6.6e-42  Score=297.34  Aligned_cols=151  Identities=40%  Similarity=0.759  Sum_probs=140.6

Q ss_pred             ccccchHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccc
Q psy16981        141 RQTQTLFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV  218 (302)
Q Consensus       141 ~~~~~l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I  218 (302)
                      ..+.....+.+||++||++|  ++|.+|.+..++++|++.|+++|||++|||+||+|+|+|.||++||++||+|+|.|+|
T Consensus         7 ~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   86 (167)
T 3fn1_B            7 DSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI   86 (167)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC
T ss_pred             CCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc
Confidence            34456678899999999999  4788998766778899999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcEEeccCCC------CCCCcCCHHHHHHHHHHhhcC-CCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        219 YHPNIDLEGNVCLNILRE------DWKPVLTINSIVYGLQYLFLE-PNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       219 ~HPNId~~G~VCL~iL~e------~W~P~~tI~sIL~~Iq~Ll~~-Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      |||||+.+|+||+++|..      +|+|+++|.+||.+|++||.+ ||+++|+|.|||++|++|+++|.++||+++++++
T Consensus        87 ~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A  166 (167)
T 3fn1_B           87 WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA  166 (167)
T ss_dssp             CCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999999999999999975      799999999999999999999 7999999999999999999999999999998865

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=9.6e-42  Score=293.50  Aligned_cols=142  Identities=32%  Similarity=0.634  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++|+++|  +++.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         9 ~~~~RL~kEl~~l~~~~~~~i~-~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   87 (156)
T 2e2c_A            9 SVSKRLQQELRTLLMSGDPGIT-AFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEE-EEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEE-EEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence            3678999999999  4677876 578888999999998 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      .+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++||++++++.
T Consensus        88 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~  153 (156)
T 2e2c_A           88 QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQ  153 (156)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             cCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999 899999999999998764

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=6.5e-42  Score=294.30  Aligned_cols=144  Identities=30%  Similarity=0.552  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +.+||++|+++|  +.+.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus         6 ~~~RL~kE~~~l~~~~~~~i~-~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (155)
T 1jat_A            6 LPKRIIKETEKLVSDPVPGIT-AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR   84 (155)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEE-EEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence            357999999998  5788886 568889999999999 999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        226 EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       226 ~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      +|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+++++++..
T Consensus        85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~  152 (155)
T 1jat_A           85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  152 (155)
T ss_dssp             TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988754

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.5e-41  Score=291.91  Aligned_cols=145  Identities=28%  Similarity=0.549  Sum_probs=137.9

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      +.+||++|+++|  ++|.++.+..++++|+++|+++|.|++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+
T Consensus         5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~   84 (155)
T 1wzv_A            5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN   84 (155)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCC
Confidence            568999999999  578888765788999999999888999999999999999999999999999999999999999999


Q ss_pred             CcEEeccC-CCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        227 GNVCLNIL-REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       227 G~VCL~iL-~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      |.||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+++++++..
T Consensus        85 G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~  152 (155)
T 1wzv_A           85 GQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  152 (155)
T ss_dssp             CBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999 89999999999999999999999999999999999999999999999999999988754

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=2.3e-41  Score=301.52  Aligned_cols=147  Identities=29%  Similarity=0.582  Sum_probs=138.9

Q ss_pred             cchHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccc
Q psy16981        144 QTLFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYH  220 (302)
Q Consensus       144 ~~l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~H  220 (302)
                      .....+.+||++||++|  ++|.+|. +.|+++|+++|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+|||
T Consensus        44 ~~~s~a~~RL~kEl~~l~~~~~~gi~-~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  122 (194)
T 3bzh_A           44 KLLSTSAKRIQKELADITLDPPPNCS-AGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH  122 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCTTEE-EEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             ccccHHHHHHHHHHHHHHhCCCCCce-eecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCcc
Confidence            34567889999999999  5778886 468889999999988 9999999999999999999999999999999999999


Q ss_pred             ccccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        221 PNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       221 PNId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      |||+.+|.|||++|.++|+|+++|.+||.+|++||.+||+++|+|.+||.+|++|+++|.++||+|+++++
T Consensus       123 PNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya  193 (194)
T 3bzh_A          123 CNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA  193 (194)
T ss_dssp             TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ceECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998765

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.3e-41  Score=293.82  Aligned_cols=144  Identities=28%  Similarity=0.543  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCC-----CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPD-----DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV  218 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~d-----dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I  218 (302)
                      ..+.+||++||++|  ++|.++. +.|.++     |+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|
T Consensus         9 ~~~~~RL~kEl~~l~~~~p~gi~-~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i   87 (163)
T 3rcz_B            9 SLCKTRLQEERKQWRRDHPFGFY-AKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL   87 (163)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTCE-EEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEE-EEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence            46789999999999  6788886 456544     899999999 99999999999999999999999999999999999


Q ss_pred             ccccccCCCcEEeccCCCC--CCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        219 YHPNIDLEGNVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       219 ~HPNId~~G~VCL~iL~e~--W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      |||||+.+|+||+++|...  |+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+++++++
T Consensus        88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya  162 (163)
T 3rcz_B           88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA  162 (163)
T ss_dssp             CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999999864  999999999999999999999999999999999999999999999999999875

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-41  Score=298.57  Aligned_cols=146  Identities=31%  Similarity=0.533  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+.+||++||++|  +.+.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus        29 ~~~~~RL~kEl~~l~~~~~~gi~-~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  107 (179)
T 1i7k_A           29 GPVGKRLQQELMTLMMSGDKGIS-AFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV  107 (179)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTTEE-EEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEE-EEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcc
Confidence            45778999999999  4678886 578888999999988 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        224 DLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       224 d~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      +.+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++|+++++++.-+.
T Consensus       108 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          108 DTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             ccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999 999999999999999876543

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=2.6e-41  Score=291.64  Aligned_cols=144  Identities=24%  Similarity=0.462  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHhccC-----CCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        148 HVCCVFLSDLNELN-----LPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       148 ~~~~Rl~kEL~eL~-----lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      .+.+||++|+++|.     .+.++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus         8 ~a~~RL~kEl~~l~~~~~~~~~~i~-~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   86 (159)
T 2bep_A            8 IAVQRIKREFKEVLKSEETSKNQIK-VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTSEE-EEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCEE-EEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCcc
Confidence            46789999999993     366775 467788999999999 99999999999999999999999999999999999999


Q ss_pred             cccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        222 NIDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       222 NId~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      ||+. +|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus        87 ni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A           87 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             TBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence            9995 9999999999999999999999999999999999999999999999999999999999999998764

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=3e-41  Score=300.65  Aligned_cols=147  Identities=28%  Similarity=0.514  Sum_probs=133.3

Q ss_pred             chHHHHHHHHHHHhcc--CCC-------------CCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCC
Q psy16981        145 TLFHVCCVFLSDLNEL--NLP-------------KTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHE  208 (302)
Q Consensus       145 ~l~~~~~Rl~kEL~eL--~lP-------------~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~  208 (302)
                      ....+.+||++||++|  ++|             .++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++
T Consensus        29 ~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~-v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~  107 (193)
T 2f4z_A           29 GTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVS-AQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYN  107 (193)
T ss_dssp             ---CHHHHHHHHHHHHHHC----------------CEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred             CCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEE-EEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCC
Confidence            3445788999999999  444             5665 467788999999999 9999999999999999999999999


Q ss_pred             CCeeeEecccccccccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q psy16981        209 PPKVKCETPVYHPNIDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAM  287 (302)
Q Consensus       209 PP~V~F~T~I~HPNId~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~  287 (302)
                      ||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+
T Consensus       108 PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t  187 (193)
T 2f4z_A          108 PPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWT  187 (193)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999999995 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCC
Q psy16981        288 RGGYI  292 (302)
Q Consensus       288 ~~~~v  292 (302)
                      ++++.
T Consensus       188 ~~ya~  192 (193)
T 2f4z_A          188 ETFAK  192 (193)
T ss_dssp             HHHCC
T ss_pred             HHHcc
Confidence            98763

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=1.9e-41  Score=290.95  Aligned_cols=146  Identities=29%  Similarity=0.555  Sum_probs=134.6

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      +.+||++|+++|  ++|.++..+.++++|+++|+++|.|++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   82 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEK   82 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCC
Confidence            457999999999  467788766668899999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        227 GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       227 G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      |+||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+++++++.+.
T Consensus        83 G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~  151 (154)
T 1c4z_D           83 GQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR  151 (154)
T ss_dssp             CBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred             CEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence            999999997 89999999999999999999999999999999999999999999999999999987653

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=2.4e-41  Score=305.94  Aligned_cols=150  Identities=25%  Similarity=0.533  Sum_probs=140.0

Q ss_pred             chHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        145 TLFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       145 ~l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      ....+.+||++||++|  ++|.++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus        20 ~~s~a~~RL~kEl~~l~~~~~~gi~-~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP   98 (216)
T 2pwq_A           20 QGSKELLRLQKELKDIENENVQEID-AHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHP   98 (216)
T ss_dssp             CSCHHHHHHHHHHHHHHHSCTTTEE-EEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCEE-EEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCC
Confidence            3456789999999999  5778886 467888999999999 99999999999999999999999999999999999999


Q ss_pred             cccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCc
Q psy16981        222 NIDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSV  295 (302)
Q Consensus       222 NId~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~  295 (302)
                      ||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+|+++++....
T Consensus        99 NI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~  173 (216)
T 2pwq_A           99 NISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPK  173 (216)
T ss_dssp             TBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred             CCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCc
Confidence            9995 8999999999999999999999999999999999999999999999999999999999999999887654

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=6.9e-41  Score=295.48  Aligned_cols=144  Identities=27%  Similarity=0.521  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++||++|  ++|.++.+..++++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         7 ~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   86 (183)
T 3rz3_A            7 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY   86 (183)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCC
Confidence            5788999999999  67888876668899999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHh------CHHHHHHHHHH
Q psy16981        225 LEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN------NRRLFEQNVQK  285 (302)
Q Consensus       225 ~~G~VCL~iL~-------------e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~------nr~~F~~~vr~  285 (302)
                      .+|+||+++|.             ++|+|+++|.+||++|++||.+||+++|+|.|||.+|++      |+++|.++||+
T Consensus        87 ~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~  166 (183)
T 3rz3_A           87 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRK  166 (183)
T ss_dssp             TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHH
Confidence            99999999997             889999999999999999999999999999999999999      78999999999


Q ss_pred             HHHccC
Q psy16981        286 AMRGGY  291 (302)
Q Consensus       286 ~~~~~~  291 (302)
                      +++++.
T Consensus       167 ~v~~s~  172 (183)
T 3rz3_A          167 QVLGTK  172 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=1.1e-40  Score=287.25  Aligned_cols=143  Identities=27%  Similarity=0.489  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCC-----CCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNP-----DDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVY  219 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~-----ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~  219 (302)
                      .+.+||++|+++|  ++|.++.+ .|.+     +|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus         4 ~a~~RL~kE~~~l~~~~~~g~~~-~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   82 (157)
T 2gjd_A            4 LCLQRLQEERKKWRKDHPFGFYA-KPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY   82 (157)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTCEE-EEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEE-EeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence            4678999999999  67888864 4542     4899999999 999999999999999999999999999999999999


Q ss_pred             cccccCCCcEEeccCCC--CCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        220 HPNIDLEGNVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       220 HPNId~~G~VCL~iL~e--~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      ||||+.+|+||+++|..  +|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+++++++
T Consensus        83 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a  156 (157)
T 2gjd_A           83 HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS  156 (157)
T ss_dssp             CTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred             cCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999987  7999999999999999999999999999999999999999999999999999875

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=4.3e-41  Score=294.31  Aligned_cols=140  Identities=29%  Similarity=0.611  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+.+||++||++|  ++|.++.+...+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus        16 ~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV   95 (172)
T 2awf_A           16 PRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV   95 (172)
T ss_dssp             CTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCC
Confidence            45678899999998  67888875444568999999988 9999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHH-HHHHHHHHH
Q psy16981        224 DLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRR-LFEQNVQKA  286 (302)
Q Consensus       224 d~~G~VCL~iL~-------------e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~-~F~~~vr~~  286 (302)
                      +.+|+||+++|.             ++|+|+++|.+||.+|++||.+|++++|+|.|||++|++|++ +|+++||+|
T Consensus        96 ~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A           96 DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             CTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            999999999997             689999999999999999999999999999999999999999 999999976

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=1.2e-40  Score=297.64  Aligned_cols=144  Identities=24%  Similarity=0.468  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhccC-----CCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccc
Q psy16981        149 VCCVFLSDLNELN-----LPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPN  222 (302)
Q Consensus       149 ~~~Rl~kEL~eL~-----lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPN  222 (302)
                      +.+||++||++|.     .|.++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus         6 a~~Rl~kEl~~l~~~~~~~~~~i~-~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   84 (201)
T 3k9o_A            6 AVQRIKREFKEVLKSEETSKNQIK-VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN   84 (201)
T ss_dssp             THHHHHHHHHHHHTCHHHHTTSEE-EEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEE-EEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCC
Confidence            5789999999992     256775 567888999999999 899999999999999999999999999999999999999


Q ss_pred             ccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        223 IDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       223 Id~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      |+. +|.||+++|.++|+|+++|.+||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++++.+
T Consensus        85 v~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~  156 (201)
T 3k9o_A           85 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  156 (201)
T ss_dssp             BCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             CcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            995 99999999999999999999999999999999999999999999999999999999999999887655

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9.2e-41  Score=291.66  Aligned_cols=140  Identities=26%  Similarity=0.484  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc-
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI-  223 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI-  223 (302)
                      .+.+||++|+++|  +.|.++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||||| 
T Consensus        23 ~a~~RL~kEl~~l~~~~~~gi~-~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~  101 (169)
T 1yrv_A           23 RAYLLLHRDFCDLKENNYKGIT-AKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD  101 (169)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTEE-EEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEE-EEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCccc
Confidence            5789999999999  5778885 578889999999999 9999999999999999999999999999999999999999 


Q ss_pred             cCCCcEEeccCC--CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHc
Q psy16981        224 DLEGNVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRG  289 (302)
Q Consensus       224 d~~G~VCL~iL~--e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~  289 (302)
                      +.+|+||+++|+  ++|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|.++ ++++++
T Consensus       102 ~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A          102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             TTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             CCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence            789999999998  89999999999999999999999999999999999999999999998 888864

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=3.1e-40  Score=285.66  Aligned_cols=144  Identities=30%  Similarity=0.544  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccC-----CCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPN-----PDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVY  219 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~-----~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~  219 (302)
                      .+.+||++|+++|  +.|.++.. .|.     ++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus         7 ~a~~RL~kE~~~l~~~~~~g~~~-~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   85 (161)
T 2grr_A            7 IALSRLAQERKAWRKDHPFGFVA-VPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF   85 (161)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEE-EEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEE-EeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcc
Confidence            4679999999999  57788864 443     36899999999 999999999999999999999999999999999999


Q ss_pred             cccccCCCcEEeccCCC--CCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        220 HPNIDLEGNVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       220 HPNId~~G~VCL~iL~e--~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      ||||+.+|.||+++|+.  +|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+++++++.
T Consensus        86 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A           86 HPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             STTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999999999986  89999999999999999999999999999999999999999999999999998764

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=2.7e-40  Score=289.07  Aligned_cols=145  Identities=23%  Similarity=0.451  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHhccC--C-C------CC---eEEecc-CCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeee
Q psy16981        148 HVCCVFLSDLNELN--L-P------KT---CTTEFP-NPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVK  213 (302)
Q Consensus       148 ~~~~Rl~kEL~eL~--l-P------~~---~~~~~p-~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~  213 (302)
                      .+.+||++||++|.  . |      +.   +..+.| +++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~   85 (172)
T 2y9m_A            6 TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS   85 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             HHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEE
Confidence            56789999999983  2 2      32   445677 789999999988 999999999999999999999999999999


Q ss_pred             Eec-cccccccc-CCCcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHh-CHHHHHHHHHHHHHc
Q psy16981        214 CET-PVYHPNID-LEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN-NRRLFEQNVQKAMRG  289 (302)
Q Consensus       214 F~T-~I~HPNId-~~G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~-nr~~F~~~vr~~~~~  289 (302)
                      |.| +||||||+ .+|+||+++|+ ++|+|+++|.+||.+|++||.+|++++|+|.|||++|++ |+++|.++||+++++
T Consensus        86 f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~  165 (172)
T 2y9m_A           86 FMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAE  165 (172)
T ss_dssp             ECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             EeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999 99999996 69999999999 999999999999999999999999999999999999999 999999999999998


Q ss_pred             cCC
Q psy16981        290 GYI  292 (302)
Q Consensus       290 ~~v  292 (302)
                      +..
T Consensus       166 ~~~  168 (172)
T 2y9m_A          166 RER  168 (172)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            764

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=9.7e-41  Score=301.81  Aligned_cols=145  Identities=31%  Similarity=0.532  Sum_probs=135.5

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCC-CCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNP-DDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~-ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      +.+||++|+++|  ++|.++.+ .|.+ +++++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         3 a~~RL~kEl~~l~~~~~~gi~~-~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHITL-EFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTCEE-CCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEE-EECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            468999999999  57888875 5654 4677999999 99999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        225 L-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       225 ~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      . +|.||+++|.++|+|++||.+||.+|++||.+|++++|+|.+||.+|++|++.|.++||+|+++++...
T Consensus        82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~  152 (215)
T 1tte_A           82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASET  152 (215)
T ss_dssp             SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCC
Confidence            9 999999999999999999999999999999999999999999999999999999999999999988654

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=7.5e-40  Score=302.46  Aligned_cols=148  Identities=24%  Similarity=0.461  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHhcc--C---CCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccc
Q psy16981        147 FHVCCVFLSDLNEL--N---LPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYH  220 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~---lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~H  220 (302)
                      ..+.+||++||++|  +   .|.++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus        56 ~~a~~RL~kEl~~l~~~~~~~~~gi~-v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  134 (253)
T 3e46_A           56 NIAVQRIKREFKEVLKSEETSKNQIK-VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH  134 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHTTSEE-EEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCEE-EEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCcc
Confidence            46789999999999  2   356775 567888999999999 8999999999999999999999999999999999999


Q ss_pred             ccccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCc
Q psy16981        221 PNIDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSV  295 (302)
Q Consensus       221 PNId~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~  295 (302)
                      |||+. +|.||+++|.++|+|+++|.+||.+|++||.+||+++|+|.|||++|++|++.|.++||+|+++++.+..
T Consensus       135 PNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~  210 (253)
T 3e46_A          135 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPV  210 (253)
T ss_dssp             TTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccccc
Confidence            99995 9999999999999999999999999999999999999999999999999999999999999988776543

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=9.6e-41  Score=286.66  Aligned_cols=143  Identities=24%  Similarity=0.485  Sum_probs=132.2

Q ss_pred             HHHHHHHHhccCCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC-CC
Q psy16981        150 CCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL-EG  227 (302)
Q Consensus       150 ~~Rl~kEL~eL~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~-~G  227 (302)
                      .+||++||++|.. .++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+. +|
T Consensus         4 ~~Rl~kEl~~l~~-~~~~-v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G   81 (152)
T 2onu_A            4 LTRKQCDFTKLIM-AGYD-LELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG   81 (152)
T ss_dssp             CCHHHHTHHHHHH-HTCC-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTC
T ss_pred             HHHHHHHHHhcCc-CCCE-EEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCC
Confidence            4688899988843 2554 456788999999999 999999999999999999999999999999999999999995 99


Q ss_pred             cEEeccCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCC
Q psy16981        228 NVCLNILREDWKPVLTINSIVYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGS  294 (302)
Q Consensus       228 ~VCL~iL~e~W~P~~tI~sIL~~-Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~  294 (302)
                      +||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+++++++...
T Consensus        82 ~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~  149 (152)
T 2onu_A           82 SVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKD  149 (152)
T ss_dssp             BBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred             eEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCc
Confidence            99999999999999999999999 68999999999999999999999999999999999999988654

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=291.06  Aligned_cols=144  Identities=23%  Similarity=0.409  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        147 FHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      ..+.+||++||++|. +.++.+ .|. +|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus        24 ~~a~~RL~kEl~~l~-~~g~~v-~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~  100 (179)
T 2z5d_A           24 SPGKRRMDTDVIKLI-ESKHEV-TIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE  100 (179)
T ss_dssp             CHHHHHHHHHHHHHH-HSSSCE-EEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             hHHHHHHHHHHHhcC-cCCCEE-EEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence            357899999999996 346654 454 6789999988 999999999999999999999999999999999999999999


Q ss_pred             -CCcEEeccCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        226 -EGNVCLNILREDWKPVLTINSIVYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       226 -~G~VCL~iL~e~W~P~~tI~sIL~~-Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                       +|.||+++|+++|+|+++|.+||.+ |++||.+||+++|+|.+||++|++|+++|.++||+++++++..
T Consensus       101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~  170 (179)
T 2z5d_A          101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE  170 (179)
T ss_dssp             TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred             CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence             9999999999999999999999999 9999999999999999999999999999999999999998764

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=4.5e-39  Score=313.75  Aligned_cols=151  Identities=30%  Similarity=0.654  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++|+++|  ++|.++. +.|.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         3 ~a~~RL~kEl~~l~~~~~~~~~-~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   81 (399)
T 4ddg_A            3 MALKRIHKELNDLARDPPAQCS-AGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   81 (399)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEE-EEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEE-EEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence            5789999999999  5788886 578889999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCccccc
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFER  299 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~~f~~  299 (302)
                      .+|.||+++|.++|+|+++|.+||.+|++||.+||+++|+|.+||++|++|++.|.++||+|++++...+..+|.
T Consensus        82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~~De  156 (399)
T 4ddg_A           82 SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDE  156 (399)
T ss_dssp             TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccchhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887764

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=5.2e-39  Score=281.06  Aligned_cols=142  Identities=24%  Similarity=0.465  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhccC-CCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        148 HVCCVFLSDLNELN-LPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       148 ~~~~Rl~kEL~eL~-lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      .+.+||++|+++|. .|.++    +.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus        12 ~~~~RL~~El~~l~~~~~~v----~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~   87 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTRKV----YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE   87 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSSCE----EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHhCCCCC----CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence            44589999999983 34332    3578999999999 999999999999999999999999999999999999999995


Q ss_pred             -CCcEEeccCCCCCCCcCCHHHHHHHH-HHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        226 -EGNVCLNILREDWKPVLTINSIVYGL-QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       226 -~G~VCL~iL~e~W~P~~tI~sIL~~I-q~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                       +|+||+++|+++|+|+++|.+||.+| ++||.+|++++|+|.+||.+|++|++.|.++||+++++++..
T Consensus        88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~  157 (171)
T 1yf9_A           88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP  157 (171)
T ss_dssp             TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred             cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence             99999999999999999999999997 799999999999999999999999999999999999987753

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=3.1e-37  Score=268.27  Aligned_cols=135  Identities=26%  Similarity=0.498  Sum_probs=121.3

Q ss_pred             HHHHHHHHhcc--CC------------CCCeEEeccCCCCceEEEEEE-eCCCcccC--CcEEEEEEEeCCCCCCCCCee
Q psy16981        150 CCVFLSDLNEL--NL------------PKTCTTEFPNPDDLLSFKLII-SPDEGFYR--SGKFVFSFKVGPNYPHEPPKV  212 (302)
Q Consensus       150 ~~Rl~kEL~eL--~l------------P~~~~~~~p~~ddl~~W~v~I-gP~~tpYe--GG~F~f~I~fp~~YP~~PP~V  212 (302)
                      .+||++|+++|  ++            +.++. +.++++|+++|+++| ||++|+|+  ||.|+|+|.||++||++||+|
T Consensus        10 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~-~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v   88 (167)
T 4ds2_A           10 NKRIIKDLKLLLEEVDANNEANSSGSPHSTAI-FSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV   88 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC----CCSSCEE-EEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEE
T ss_pred             HHHHHHHHHHHHhCcccccccccccCCCCcEE-EEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEE
Confidence            46777777777  23            44554 578899999999999 89999999  999999999999999999999


Q ss_pred             eEecccccccccCCCcEEeccCCCCCCCcCCHHHHHH-HHHHhhcC--CCCCCCccHHHHHHHHhCHHHHHHHHHH
Q psy16981        213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVY-GLQYLFLE--PNPEDPLNKEAAEVLQNNRRLFEQNVQK  285 (302)
Q Consensus       213 ~F~T~I~HPNId~~G~VCL~iL~e~W~P~~tI~sIL~-~Iq~Ll~~--Pn~~dPlN~eAA~~~~~nr~~F~~~vr~  285 (302)
                      +|.|+||||||+.+|.||+++|.++|+|+++|.++|+ .|++|+.+  |++++|+|.|||++|++|+++|+++||+
T Consensus        89 ~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr  164 (167)
T 4ds2_A           89 RFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR  164 (167)
T ss_dssp             EESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred             EEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence            9999999999999999999999999999999999765 57788875  8999999999999999999999999983

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=1.3e-36  Score=262.45  Aligned_cols=130  Identities=22%  Similarity=0.374  Sum_probs=115.0

Q ss_pred             chHHHHHHHHHHHhcc--C-CCCCeEEeccCCC--CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccc
Q psy16981        145 TLFHVCCVFLSDLNEL--N-LPKTCTTEFPNPD--DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV  218 (302)
Q Consensus       145 ~l~~~~~Rl~kEL~eL--~-lP~~~~~~~p~~d--dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I  218 (302)
                      ....+.+||++||++|  + ++.++.+...+++  |+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|
T Consensus        18 ~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i   97 (156)
T 2q0v_A           18 GIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI   97 (156)
T ss_dssp             SCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             ccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence            3345678999999999  3 5677765544433  599999999 89999999999999999999999999999999999


Q ss_pred             ccccccCCCcE---EeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q psy16981        219 YHPNIDLEGNV---CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN  275 (302)
Q Consensus       219 ~HPNId~~G~V---CL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~n  275 (302)
                      |||||+.+|+|   |+++|+ +|+|+++|.+||.+|++||.+|++++|+|++||++|++|
T Consensus        98 ~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           98 EMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             ccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            99999999999   899998 599999999999999999999999999999999998775

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=4.5e-35  Score=253.89  Aligned_cols=124  Identities=20%  Similarity=0.376  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHhcc--CCCCC-eEEeccCCCC--ceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccc
Q psy16981        146 LFHVCCVFLSDLNEL--NLPKT-CTTEFPNPDD--LLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVY  219 (302)
Q Consensus       146 l~~~~~Rl~kEL~eL--~lP~~-~~~~~p~~dd--l~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~  219 (302)
                      ...+.+||++||++|  ++|.+ +.+..++++|  +++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus        23 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  102 (160)
T 2a4d_A           23 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  102 (160)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             echHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence            356789999999999  45666 5444346665  99999999 899999999999999999999999999999999999


Q ss_pred             ccccc-CCCcEEeccCC--CCCCCcCCHHHHHHHHHHhhc-CCCCCCCccHHHH
Q psy16981        220 HPNID-LEGNVCLNILR--EDWKPVLTINSIVYGLQYLFL-EPNPEDPLNKEAA  269 (302)
Q Consensus       220 HPNId-~~G~VCL~iL~--e~W~P~~tI~sIL~~Iq~Ll~-~Pn~~dPlN~eAA  269 (302)
                      ||||+ .+|+||+++|.  ++|+|+++|.+||.+|++||. +||+++|+|.|||
T Consensus       103 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A          103 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             eCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            99999 59999999998  899999999999999999995 6999999999998

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=6.4e-35  Score=242.65  Aligned_cols=114  Identities=19%  Similarity=0.415  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccc-cccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV-YHPN  222 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I-~HPN  222 (302)
                      ..+.+||++|+++|  ++|.++.+ .++++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|++ ||||
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~-~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn   83 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTL-DVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH   83 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEE-EECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEE-EeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence            45678999999999  67888864 57889999999988 99999999999999999999999999999999996 9999


Q ss_pred             ccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCC
Q psy16981        223 IDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPE  261 (302)
Q Consensus       223 Id~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~  261 (302)
                      |+.+|+||+++|+++|+|+++|.+||.+|++||.+|+.+
T Consensus        84 v~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~  122 (125)
T 2fo3_A           84 VYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK  122 (125)
T ss_dssp             BCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred             CCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence            999999999999999999999999999999999999865

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=6.3e-35  Score=277.45  Aligned_cols=150  Identities=25%  Similarity=0.419  Sum_probs=134.8

Q ss_pred             cchHHHHHHHHHHHhcc--CCCCCeE---EeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecc
Q psy16981        144 QTLFHVCCVFLSDLNEL--NLPKTCT---TEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP  217 (302)
Q Consensus       144 ~~l~~~~~Rl~kEL~eL--~lP~~~~---~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~  217 (302)
                      .....+.+||++|+++|  ++|.++.   .+.++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus        72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            34467889999999999  4666542   2457889999999988 9999999999999999999999999999999998


Q ss_pred             -----cccccccCCCcEEeccCC-------CCCCCcC-CHHHHHHHHHHhhc--CCCCCCCccHHH--HHHHHhCHHHHH
Q psy16981        218 -----VYHPNIDLEGNVCLNILR-------EDWKPVL-TINSIVYGLQYLFL--EPNPEDPLNKEA--AEVLQNNRRLFE  280 (302)
Q Consensus       218 -----I~HPNId~~G~VCL~iL~-------e~W~P~~-tI~sIL~~Iq~Ll~--~Pn~~dPlN~eA--A~~~~~nr~~F~  280 (302)
                           |||||||.+|+|||++|+       ++|+|++ +|.+||++|++||.  +|++++|+|.+|  +.++.+|++.|.
T Consensus       152 ~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~  231 (323)
T 3ceg_A          152 GGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYD  231 (323)
T ss_dssp             TTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHH
T ss_pred             CCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHH
Confidence                 999999999999999997       6999999 89999999999996  777899999987  578999999999


Q ss_pred             HHHHHHHHccCCC
Q psy16981        281 QNVQKAMRGGYIG  293 (302)
Q Consensus       281 ~~vr~~~~~~~v~  293 (302)
                      ++|++++.++++.
T Consensus       232 ~~vr~~t~k~A~~  244 (323)
T 3ceg_A          232 GNIRQATVKWAML  244 (323)
T ss_dssp             HHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHhhH
Confidence            9999999987653

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=8.7e-36  Score=251.78  Aligned_cols=124  Identities=23%  Similarity=0.461  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhcc--C-CCCCeEEeccCCC--CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        148 HVCCVFLSDLNEL--N-LPKTCTTEFPNPD--DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~-lP~~~~~~~p~~d--dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      .+.+||++|+++|  + .+.++.+...+++  |+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   85 (138)
T 1jat_B            6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP   85 (138)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccC
Confidence            3458999999999  3 4677765443434  599999988 89999999999999999999999999999999999999


Q ss_pred             cccCC-CcE--EeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHH
Q psy16981        222 NIDLE-GNV--CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL  272 (302)
Q Consensus       222 NId~~-G~V--CL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~  272 (302)
                      ||+.+ |+|  |+++|+ +|+|+++|.+||.+|++||.+||+++|+|++||++|
T Consensus        86 nv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           86 CVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             TBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             CEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            99996 999  999987 899999999999999999999999999999998654

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.5e-34  Score=242.53  Aligned_cols=117  Identities=21%  Similarity=0.416  Sum_probs=107.9

Q ss_pred             ccchHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccc-
Q psy16981        143 TQTLFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV-  218 (302)
Q Consensus       143 ~~~l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I-  218 (302)
                      ..+...+.+||++|+++|  ++|.++.+ .++++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|++ 
T Consensus        15 ~~~~~~~~~RL~kEl~~l~~~~~~~~~~-~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~   93 (136)
T 2h2y_A           15 KYNLGNANYRIQKELNNFLKNPPINCTI-DVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPP   93 (136)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHSCCTTEEE-EECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred             hccchHHHHHHHHHHHHHHhCCCCCeEE-EeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCC
Confidence            334556789999999999  67888864 57889999999988 99999999999999999999999999999999996 


Q ss_pred             ccccccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCC
Q psy16981        219 YHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNP  260 (302)
Q Consensus       219 ~HPNId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~  260 (302)
                      |||||+.+|+||+++|+++|+|+++|.+||.+|++||.+|+.
T Consensus        94 ~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           94 KHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             CCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            999999999999999999999999999999999999999874

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=8.8e-35  Score=254.21  Aligned_cols=122  Identities=20%  Similarity=0.388  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHhcc--CCCCC-eEEeccCCCC--ceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKT-CTTEFPNPDD--LLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~-~~~~~p~~dd--l~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      .+.+||++||++|  +++.+ +.+..++++|  +++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus        35 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HP  114 (170)
T 2hlw_A           35 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN  114 (170)
T ss_dssp             CHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCS
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccC
Confidence            4678999999999  46667 4443346665  99999999 89999999999999999999999999999999999999


Q ss_pred             ccc-CCCcEEeccCC--CCCCCcCCHHHHHHHHHHhhc-CCCCCCCccHHHH
Q psy16981        222 NID-LEGNVCLNILR--EDWKPVLTINSIVYGLQYLFL-EPNPEDPLNKEAA  269 (302)
Q Consensus       222 NId-~~G~VCL~iL~--e~W~P~~tI~sIL~~Iq~Ll~-~Pn~~dPlN~eAA  269 (302)
                      ||+ .+|+||+++|.  ++|+|+++|.+||.+|++||. +||+++|+|.|||
T Consensus       115 NV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          115 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             SBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             CEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            999 69999999998  899999999999999999997 5999999999997

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7e-33  Score=234.15  Aligned_cols=106  Identities=25%  Similarity=0.502  Sum_probs=99.6

Q ss_pred             HHHHHHHhcc--CCCCCeEEe-ccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccc--ccccc
Q psy16981        151 CVFLSDLNEL--NLPKTCTTE-FPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVY--HPNID  224 (302)
Q Consensus       151 ~Rl~kEL~eL--~lP~~~~~~-~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~--HPNId  224 (302)
                      +||++||++|  ++|.++.+. .|+++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|++|  ||||+
T Consensus        25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~  104 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY  104 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCC
Confidence            8999999999  678888642 47889999999998 999999999999999999999999999999999999  99999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhc
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFL  256 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~  256 (302)
                      .+|+||+++|+++|+|+++|.+||.+|++||.
T Consensus       105 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          105 SNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            99999999999999999999999999999984

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=5.4e-33  Score=246.09  Aligned_cols=148  Identities=17%  Similarity=0.306  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccc
Q psy16981        146 LFHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPN  222 (302)
Q Consensus       146 l~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPN  222 (302)
                      ...+.+||++||++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+  |||
T Consensus        12 ~~~a~~RL~kEl~~l~~~~~~~i~-~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~   88 (187)
T 2f4w_A           12 PTTATQRLKQDYLRIKKDPVPYIC-AEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGR   88 (187)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSS
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCEE-EEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cce
Confidence            345789999999999  5777876 468889999999998 9999999999999999999999999999999999  999


Q ss_pred             ccCCCcEEeccC---CCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCccccc
Q psy16981        223 IDLEGNVCLNIL---REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFER  299 (302)
Q Consensus       223 Id~~G~VCL~iL---~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~~f~~  299 (302)
                      |+.+|+|||++|   .++|+|+++|.+||.+|++||.+|+++...   + ......++.|.+.++.+..+..+....|+.
T Consensus        89 ~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~---~-~~~~~~r~~~a~~s~~~~~~~~~f~~~fp~  164 (187)
T 2f4w_A           89 FKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGS---I-ETSDFTKRQLAVQSLAFNLKDKVFCELFPE  164 (187)
T ss_dssp             BCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTB---C-CCCHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred             eccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcc---c-ccChHHHHHHHHHHHHHhhcCchHHHhhHH
Confidence            999999999999   689999999999999999999999987431   1 111234666777777777666555555554


Q ss_pred             c
Q psy16981        300 C  300 (302)
Q Consensus       300 ~  300 (302)
                      +
T Consensus       165 ~  165 (187)
T 2f4w_A          165 V  165 (187)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=2.5e-32  Score=241.70  Aligned_cols=136  Identities=14%  Similarity=0.307  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhccC--C---CCCeEEeccCCCCceEEEEEE-eC-CCcccCC-----------cEEEEEEEeCCCCCCC
Q psy16981        147 FHVCCVFLSDLNELN--L---PKTCTTEFPNPDDLLSFKLII-SP-DEGFYRS-----------GKFVFSFKVGPNYPHE  208 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL~--l---P~~~~~~~p~~ddl~~W~v~I-gP-~~tpYeG-----------G~F~f~I~fp~~YP~~  208 (302)
                      ..+.+||++||++|.  +   +.++. +.|.++|+++|+++| || ++|||+|           |.|+|+|.||++||++
T Consensus        26 ~~a~~RL~kEl~~l~~~~~~~~~~~~-~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~  104 (186)
T 1zuo_A           26 VQASDRLMKELRDIYRSQSYKTGIYS-VELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD  104 (186)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHTTSEE-EEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcEE-EEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCC
Confidence            467899999999993  3   45565 567889999999999 87 8999998           8999999999999999


Q ss_pred             CCeeeEecccccc-cccCCCcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q psy16981        209 PPKVKCETPVYHP-NIDLEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKA  286 (302)
Q Consensus       209 PP~V~F~T~I~HP-NId~~G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~  286 (302)
                      ||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|.+||.+|++||.+|++..        .++.++.+|.+.++++
T Consensus       105 PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~  176 (186)
T 1zuo_A          105 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQ  176 (186)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHH
T ss_pred             CCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHH
Confidence            9999999999999 69999999999997 799999999999999999999986543        3455567777777766


Q ss_pred             HHccC
Q psy16981        287 MRGGY  291 (302)
Q Consensus       287 ~~~~~  291 (302)
                      +.++.
T Consensus       177 ~~~~~  181 (186)
T 1zuo_A          177 SYNSI  181 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.84  E-value=1.8e-22  Score=175.31  Aligned_cols=98  Identities=11%  Similarity=0.119  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeccCCCCceEEEEEE-eCCCcccCCc----------EEEEEEEeCCCCCCCCCeeeEe
Q psy16981        147 FHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSG----------KFVFSFKVGPNYPHEPPKVKCE  215 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG----------~F~f~I~fp~~YP~~PP~V~F~  215 (302)
                      ....+||++|++.|..     .+.|+.+|++.|.++| ||++|+|+||          .|.++|.||++||++||+|+|.
T Consensus        31 ~~w~~RL~eE~k~L~k-----~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~  105 (172)
T 2z6o_A           31 ELWVQRLKEEYQSLIR-----YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVP  105 (172)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCG
T ss_pred             HHHHHHHHHHHHHHHH-----HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeC
Confidence            4567899999988743     2467778999999988 9999999999          9999999999999999999999


Q ss_pred             cc-cccccccCCCcEEeccC-CC---CCCCcCCHHHHHH
Q psy16981        216 TP-VYHPNIDLEGNVCLNIL-RE---DWKPVLTINSIVY  249 (302)
Q Consensus       216 T~-I~HPNId~~G~VCL~iL-~e---~W~P~~tI~sIL~  249 (302)
                      +. +||||||.+|+|||||| ..   .|+|.++|.++|.
T Consensus       106 ~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          106 ELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             GGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred             CCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence            98 99999999999999999 43   4569999999984

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.69  E-value=3.3e-17  Score=142.12  Aligned_cols=91  Identities=23%  Similarity=0.330  Sum_probs=75.2

Q ss_pred             cCCCCceEEEEEE-eCCCcccCCcE---EEEEEEeCCCCCCCCCeeeEec-------c---cc-cccccCCCcEEeccCC
Q psy16981        171 PNPDDLLSFKLII-SPDEGFYRSGK---FVFSFKVGPNYPHEPPKVKCET-------P---VY-HPNIDLEGNVCLNILR  235 (302)
Q Consensus       171 p~~ddl~~W~v~I-gP~~tpYeGG~---F~f~I~fp~~YP~~PP~V~F~T-------~---I~-HPNId~~G~VCL~iL~  235 (302)
                      ..+|....+-+.+ |.-..+|+||.   |.+.|.||.+||++||.|.|.+       +   |+ |||||.+|+||+++|.
T Consensus        55 t~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~  134 (162)
T 3r3q_A           55 THSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH  134 (162)
T ss_dssp             ECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGG
T ss_pred             EcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccc
Confidence            3444433344434 44447899999   8899999999999999998865       1   78 9999999999999995


Q ss_pred             CCCCC-cCCHHHHHHHHHHhhcCCCCCC
Q psy16981        236 EDWKP-VLTINSIVYGLQYLFLEPNPED  262 (302)
Q Consensus       236 e~W~P-~~tI~sIL~~Iq~Ll~~Pn~~d  262 (302)
                       +|+| +.+|.++|.+|+++|.+|+++.
T Consensus       135 -~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          135 -AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             -SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             -cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence             6999 5799999999999999999985

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.41  E-value=1.5e-14  Score=123.45  Aligned_cols=88  Identities=15%  Similarity=0.236  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeccCCCCceEEEEEE-eCCCcccCCc----------EEEEEEEeCCCCCCCCCeeeEe
Q psy16981        147 FHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSG----------KFVFSFKVGPNYPHEPPKVKCE  215 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG----------~F~f~I~fp~~YP~~PP~V~F~  215 (302)
                      .....||..|+..|     +..+.-+.++=..|...+ +|+||+|+|+          .|++.|.||.+||..||.|+|.
T Consensus        33 ~~w~~RlkeEy~al-----I~yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp  107 (168)
T 3kpa_A           33 DKWTARLKEEYASL-----ITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALP  107 (168)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCG
T ss_pred             HHHHHHHHHHHHHH-----HHHHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecc
Confidence            34667788887774     111111211122377767 8999999999          9999999999999999999999


Q ss_pred             cc-cccccccCCCcEEeccCCCCCCCcC
Q psy16981        216 TP-VYHPNIDLEGNVCLNILREDWKPVL  242 (302)
Q Consensus       216 T~-I~HPNId~~G~VCL~iL~e~W~P~~  242 (302)
                      +. .+|||+|.+|+|||+++   |+|.+
T Consensus       108 ~ldgkt~kmYr~GkICLdIh---wkPlW  132 (168)
T 3kpa_A          108 ELEGKTVKMYRGGKICMTTH---FFPLW  132 (168)
T ss_dssp             GGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred             cccCcCccccCCCcEEeccc---cchhh
Confidence            95 89999999999999996   77765

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.36  E-value=8.9e-13  Score=112.50  Aligned_cols=80  Identities=21%  Similarity=0.395  Sum_probs=71.0

Q ss_pred             CCCceEEEEEEeCCCcccCCcEEEE--EEEeCCCCCCCCCeeeEecc------cccccccCCCcEEeccCCCCCCC-cCC
Q psy16981        173 PDDLLSFKLIISPDEGFYRSGKFVF--SFKVGPNYPHEPPKVKCETP------VYHPNIDLEGNVCLNILREDWKP-VLT  243 (302)
Q Consensus       173 ~ddl~~W~v~IgP~~tpYeGG~F~f--~I~fp~~YP~~PP~V~F~T~------I~HPNId~~G~VCL~iL~e~W~P-~~t  243 (302)
                      ..+++.|.++|.   .+|+|+.|.+  .|.||.+||++||.| |.++      .+|||||.+|+||+++|.+ |++ ..+
T Consensus        50 ~~~LL~l~GtIp---v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~sn  124 (146)
T 3obq_A           50 SRELMNLTGTIP---VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQSD  124 (146)
T ss_dssp             TCEEEEEEEEEE---EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTCC
T ss_pred             hheEEEEEEEee---eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCCC
Confidence            457999999997   6799999985  999999999999999 6655      5899999999999999975 988 779


Q ss_pred             HHHHHHHHHHhhcC
Q psy16981        244 INSIVYGLQYLFLE  257 (302)
Q Consensus       244 I~sIL~~Iq~Ll~~  257 (302)
                      |.++|..|+.+|.+
T Consensus       125 L~~ll~~l~~~F~~  138 (146)
T 3obq_A          125 LLGLIQVMIVVFGD  138 (146)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999964

>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A {Homo sapiens}

Probab=97.76  E-value=3e-06  Score=51.65  Aligned_cols=21  Identities=62%  Similarity=0.776  Sum_probs=16.9

Q ss_pred             HHhhhhhccccccCCCCCCCC
Q psy16981         33 MIKLFSLKQQKKDGENPARPG   53 (302)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~   53 (302)
                      ||||||||++|++++.++..+
T Consensus         1 MIkLFSlK~kk~~e~~~~as~   21 (26)
T 1tt5_E            1 MIKLFSLKQQKKEEESAGGTK   21 (26)
T ss_pred             CcchhhhhHHHHHhhcccccC
Confidence            899999999997776665543

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=92.00  E-value=0.7  Score=37.41  Aligned_cols=41  Identities=15%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             ceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEec
Q psy16981        176 LLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCET  216 (302)
Q Consensus       176 l~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T  216 (302)
                      ...+.+.|.+..+.-..-.+.+.|.+|++||..||.|...+
T Consensus        45 ~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           45 QIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             CSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             CcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            45677777654332123478899999999999999998654

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.91  E-value=0.51  Score=37.70  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=27.9

Q ss_pred             ceEEEEEEeCCCc-ccCCcEEEEEEEeCCCCCCCCCeeeEec
Q psy16981        176 LLSFKLIISPDEG-FYRSGKFVFSFKVGPNYPHEPPKVKCET  216 (302)
Q Consensus       176 l~~W~v~IgP~~t-pYeGG~F~f~I~fp~~YP~~PP~V~F~T  216 (302)
                      ...+.+.|.+..+ .-+.-.+.+.|.+|++||.+||.|....
T Consensus        37 ~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           37 PPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             SCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             CCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            3556666643321 1223468899999999999999987643

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.67  E-value=1.1  Score=35.81  Aligned_cols=40  Identities=15%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             ceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEe
Q psy16981        176 LLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE  215 (302)
Q Consensus       176 l~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~  215 (302)
                      ...+.+.|.+.+..=..-.+.+.|.+|++||..||.|...
T Consensus        39 ~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           39 GTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             CEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             CCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            4577777765432111247899999999999999998754

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=88.36  E-value=2.7  Score=35.02  Aligned_cols=66  Identities=15%  Similarity=0.066  Sum_probs=40.1

Q ss_pred             EEEEEEEeCCCCCCCCCeeeEecccccccccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHH
Q psy16981        194 KFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ  273 (302)
Q Consensus       194 ~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~  273 (302)
                      .+.+.|.+|.+||..+|.|...+.                    |-.......+...|...+.+-+..++.=-.+...++
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~--------------------~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lq  135 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS--------------------ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQ  135 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS--------------------SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHH
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC--------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            799999999999999999985442                    211122334444555555443445555555555555


Q ss_pred             hCHHHH
Q psy16981        274 NNRRLF  279 (302)
Q Consensus       274 ~nr~~F  279 (302)
                      ++-..|
T Consensus       136 e~~~~~  141 (154)
T 2daw_A          136 DNSASY  141 (154)
T ss_dssp             HTTHHH
T ss_pred             HHHHHH
Confidence            554443

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=85.56  E-value=2.5  Score=34.87  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             EEEEEEEeCCCCCCCCCeeeEec
Q psy16981        194 KFVFSFKVGPNYPHEPPKVKCET  216 (302)
Q Consensus       194 ~F~f~I~fp~~YP~~PP~V~F~T  216 (302)
                      .+.+.|.+|.+||..||.|....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~   96 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRS   96 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEEC
T ss_pred             eEEEEEECCCCCCCCCCeEEEEc
Confidence            58899999999999999998655

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=84.95  E-value=2.2  Score=33.93  Aligned_cols=24  Identities=29%  Similarity=0.607  Sum_probs=21.2

Q ss_pred             cEEEEEEEeCCCCCCCCCeeeEec
Q psy16981        193 GKFVFSFKVGPNYPHEPPKVKCET  216 (302)
Q Consensus       193 G~F~f~I~fp~~YP~~PP~V~F~T  216 (302)
                      -.+.+.|.+|++||..+|.|...+
T Consensus        59 ~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           59 VCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             eeEEEEEEcCCCCCCCCCCeEEEc
Confidence            468899999999999999998765

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=83.60  E-value=0.41  Score=40.52  Aligned_cols=53  Identities=17%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             cccccchhhhhhhhccccC----CC-------CCC-----ccccccceecccCCcccccccccccccCC
Q psy16981         55 QQKKASAAQLRITKAELEL----PT-------YSG-----SVLLHQGVLLYKGPTYLFGQESGFNQTNT  107 (302)
Q Consensus        55 ~~~~~s~~~~r~~~~~~~~----p~-------~~~-----~~~~~~~~~~~~~~~~~f~~~~~~~~~n~  107 (302)
                      ...++|+++.||+||--+|    |.       ..+     .+.+.+..+-|.||.|.+.+.+..+||..
T Consensus         8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~   76 (167)
T 3fn1_B            8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV   76 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTB
T ss_pred             CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCC
Confidence            4467889999999864332    22       222     34456778899999999999999999964

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=82.57  E-value=0.57  Score=39.54  Aligned_cols=50  Identities=32%  Similarity=0.408  Sum_probs=35.3

Q ss_pred             ccchhhhhhhhccccC--CCC-------CC-----ccccccceecccCCcccccccccccccCC
Q psy16981         58 KASAAQLRITKAELEL--PTY-------SG-----SVLLHQGVLLYKGPTYLFGQESGFNQTNT  107 (302)
Q Consensus        58 ~~s~~~~r~~~~~~~~--p~~-------~~-----~~~~~~~~~~~~~~~~~f~~~~~~~~~n~  107 (302)
                      |.|++..||+||--+|  |+.       .+     .+++.|..+-|.||.|.+.+.+..+||..
T Consensus         3 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~   66 (160)
T 1y8x_A            3 MASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHD   66 (160)
T ss_dssp             SCCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTS
T ss_pred             cccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCC
Confidence            4566777777754332  211       11     34567888999999999999999999953

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=81.70  E-value=0.59  Score=38.37  Aligned_cols=51  Identities=18%  Similarity=0.068  Sum_probs=36.3

Q ss_pred             cccchhhhhhhhccccC----CCCC------C-----cccc-ccceecccCCcccccccccccccCC
Q psy16981         57 KKASAAQLRITKAELEL----PTYS------G-----SVLL-HQGVLLYKGPTYLFGQESGFNQTNT  107 (302)
Q Consensus        57 ~~~s~~~~r~~~~~~~~----p~~~------~-----~~~~-~~~~~~~~~~~~~f~~~~~~~~~n~  107 (302)
                      .+.++|..||+||--++    |..+      +     .+.| -|..+-|.||.|.+.+.+..+||..
T Consensus        16 ~~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~   82 (136)
T 2h2y_A           16 YNLGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLK   82 (136)
T ss_dssp             CCTTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCC
Confidence            35667788888754322    2221      1     3344 4888999999999999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	9e-53
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-35
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	9e-34
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-32
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	3e-32
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-31
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	2e-31
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	1e-30
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-29
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-29
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	8e-29
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-28
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	2e-28
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	6e-28
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	7e-27
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	2e-26
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	4e-26
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	3e-24
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	2e-23
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	4e-23
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	7e-23
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	8e-23
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-22
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-20
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-18
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	5e-17
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	6e-17
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	7e-17
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	8e-16
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	7e-15
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	2e-12

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score =  167 bits (425), Expect = 9e-53
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           D+NELNLPKTC   F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG  YPH+PPKVKCE
Sbjct: 11  DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 70

Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
           T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 71  TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 130

Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
           RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 131 RRLFEQNVQRSMRGGYIGSTYFERCLK 157

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  121 bits (305), Expect = 8e-35
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
           + D   +  + P   +      + ++   +II P +  Y  G F    +    YP++PP 
Sbjct: 9   MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPH 68

Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           VK  + ++HPN+   G +CL+IL+  W P   + SI+  +Q LF +PNP  P N EAA +
Sbjct: 69  VKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATL 128

Query: 272 LQNNRRLFEQNVQKAMR 288
            ++++  + + V++ + 
Sbjct: 129 FKDHKSQYVKRVKETVE 145

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  119 bits (298), Expect = 9e-34
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 16/149 (10%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
            L ++        +    + +D+  ++ L+I P +  Y  G F        +YP +PPK+
Sbjct: 8   QLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKM 67

Query: 213 KCETPVYHPNIDLEGNVCLNILRE-------------DWKPVLTINSIVYGLQYLFLEPN 259
           K  + ++HPNID EGNVC++IL +              W PV T+ +I+  +  +  +PN
Sbjct: 68  KFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPN 127

Query: 260 PEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
            E P N +AA++ + N   F++ V + +R
Sbjct: 128 FESPANVDAAKMQRENYAEFKKKVAQCVR 156

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-32
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           +L E+  + P  C+      +       I+ P    Y  G F       P+YP +PPKV 
Sbjct: 10  ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVT 69

Query: 214 CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
             T +YH NI+ +G +CL+IL+++W P LTI+ ++  +  L  + NP DPL    A    
Sbjct: 70  FRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM 129

Query: 274 NNRRLFEQNVQK 285
            NR   ++  ++
Sbjct: 130 TNRAEHDRMARQ 141

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  114 bits (287), Expect = 3e-32
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
           + D  +L  + P   +      + L    +I  P E  +  G F  S +    YP++PP 
Sbjct: 9   MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPT 68

Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           VK  + ++HPN+  +G++CL+IL+  W P   + +I+  +Q L  EPNP  P N  AA++
Sbjct: 69  VKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 128

Query: 272 LQNNRRLFEQNVQK 285
            Q NRR +E+ VQ+
Sbjct: 129 YQENRREYEKRVQQ 142

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score =  112 bits (281), Expect = 2e-31
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           + ++  +  +     T EF +  D+   K   + P    Y  GKFV   +V   YP +PP
Sbjct: 7   MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP 66

Query: 211 KVKCETPVYHPNIDLEGNV-CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
           K++ +T VYHPNI       CL+IL+  W PV+T+ S +  LQ L   P P DP + E A
Sbjct: 67  KMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVA 126

Query: 270 EVLQNNRRLFEQNVQ 284
           +    +R  F +   
Sbjct: 127 QHYLRDRESFNKTAA 141

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  112 bits (281), Expect = 2e-31
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           +L +L  + P  C+      D       I+ P E  Y+ G F  +     +YP +PPKV 
Sbjct: 9   ELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVA 68

Query: 214 CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
             T +YHPNI+  G++CL+ILR  W P LTI+ ++  +  L  +PNP+DPL  E A + +
Sbjct: 69  FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128

Query: 274 NNRRLFEQNVQK 285
            +R  + Q  ++
Sbjct: 129 TDRERYNQLARE 140

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score =  110 bits (275), Expect = 1e-30
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
           + +L E+     K       +  +LL+++ +I PD   Y  G F         YP +PPK
Sbjct: 5   MKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPK 64

Query: 212 VKCETPVYHPNIDLEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
           +  +T +YHPNID +G VCL ++  E+WKP    + ++  L  L  +P PE PL  + AE
Sbjct: 65  ITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAE 124

Query: 271 VLQNNRRLFEQNVQ 284
               +R+ F +N +
Sbjct: 125 EYSKDRKKFCKNAE 138

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  107 bits (267), Expect = 3e-29
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 16/151 (10%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLL-SFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           L +L +L  + P        + +++     LI  P +  Y  G F    +   +YP  PP
Sbjct: 9   LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP 68

Query: 211 KVKCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLE 257
           K+     + HPNI   G VC++IL              E W PV ++  I+  +  +  E
Sbjct: 69  KLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 128

Query: 258 PNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
           PN E   N +A  + ++NR  FE+ V+ ++ 
Sbjct: 129 PNIESGANIDACILWRDNRPEFERQVKLSIL 159

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score =  106 bits (266), Expect = 4e-29
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
           + +L +L    P        +  ++L +  ++ PD+  Y    F       P YP +PP 
Sbjct: 6   VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPM 65

Query: 212 VKCETPVYHPNIDLEGNVCLNILREDW-KPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
           +K  T +YHPN+D  G +CL I+  +  KP      ++  L  L   PN  +PL  + A+
Sbjct: 66  IKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLAD 125

Query: 271 VLQNNRRLFEQNVQ 284
           +L  N  LF +N +
Sbjct: 126 LLTQNPELFRKNAE 139

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score =  106 bits (264), Expect = 8e-29
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
           + +   L          E    +      +I  P +  +  G F     +   YP   PK
Sbjct: 8   IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 67

Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           V+  T +YHPN+D  G +CL+IL++ W P L I +++  +Q L   PNP+DPL  + AE 
Sbjct: 68  VRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQ 127

Query: 272 LQNNRRLFEQNVQ 284
            + N     +  +
Sbjct: 128 WKTNEAQAIETAR 140

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
           + +  +L  +     T E  + +       I  P++  Y  G F     +  +YP E PK
Sbjct: 9   IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPK 68

Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
           V+  T +YHPNID  G +CL++L+ +W P L I +++  +Q L   PNP DPL  + AE 
Sbjct: 69  VRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAED 128

Query: 272 LQNNRRLFEQNVQ 284
              N +  +   +
Sbjct: 129 WIKNEQGAKAKAR 141

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 155 SDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
           S+    +      +      D+  ++  I+ P    Y  G F     + P+YP+ PPK+K
Sbjct: 22  SEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 81

Query: 214 CETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
             T ++HPNI  + G +CL+IL+ +W P LTI + +  +Q +  +P P DP + E A+++
Sbjct: 82  FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 141

Query: 273 QNNRRLFEQNVQ 284
             N  LF Q  +
Sbjct: 142 IENHPLFVQTAK 153

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (258), Expect = 6e-28
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 1/128 (0%)

Query: 158 NELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP 217
           +E         +  + +       I  P +  Y  G++    K+   YP  PPKV+  T 
Sbjct: 19  SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 78

Query: 218 VYHPNIDLE-GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
           ++HPNI    G +CL+IL++ W   +T+ +++  LQ L     P+DP +   A   + N 
Sbjct: 79  IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP 138

Query: 277 RLFEQNVQ 284
            +F+Q  +
Sbjct: 139 EMFKQTAR 146

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score =  100 bits (250), Expect = 7e-27
 Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L  L  +  K  +  FP  D+L  +   I       Y   ++  S +    YP+  P V
Sbjct: 9   ELMTLMMSGDKGISA-FPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTV 67

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
           K  TP YHPN+D +GN+ L+IL+E W  +  + +I+  +Q L  EPN + PLN  AAE L
Sbjct: 68  KFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAE-L 126

Query: 273 QNNRRLFEQNVQK 285
             N   F++ +Q+
Sbjct: 127 WKNPTAFKKYLQE 139

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 99.8 bits (248), Expect = 2e-26
 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 5/136 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L  L  +     T  FP+ D+L  +   +  P +  Y S K+  + +   +YP++PP V
Sbjct: 17  ELRTLLMSGDPGITA-FPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVV 75

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
           K  TP +HPN+D  GN+CL+IL+E+W     + +I+  LQ L  EPN   PLN +AA+ +
Sbjct: 76  KFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAAD-M 134

Query: 273 QNNRRLFEQNVQKAMR 288
            +N+  +++ + +  +
Sbjct: 135 WSNQTEYKKVLHEKYK 150

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 99.1 bits (246), Expect = 4e-26
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKV 212
           ++  L  + P      FPN +DL   ++ I   EG  Y  G F     +G ++P  PPK 
Sbjct: 14  EVTTLTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 72

Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
              T ++HPN+   G +C+N+L+ DW   L I  ++  ++ L + PNPE  LN+EA  +L
Sbjct: 73  YFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 132

Query: 273 QNNRRLFEQNVQ 284
             N   +    +
Sbjct: 133 LENYEEYAARAR 144

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 3e-24
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 169 EFPNPDDLLSFKLIISPDEG-FYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
                 +L++++  I   +G  +  G F        +YP  PPK K E P++HPN+   G
Sbjct: 29  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 88

Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
            V L+IL E  DW+P +TI  I+ G+Q L  EPN +DP   EA  +   NR  +E+ V+
Sbjct: 89  TVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 147

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 4e-23
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           D  +L  N  K  T   P  +D++ ++  I       ++   F  +      Y + PP V
Sbjct: 12  DFCDLKENNYKGITA-KPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 70

Query: 213 KCETPVYHPNIDLEGN-VCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
           K  T  +HPN+D      C++ L   E W    T++SI+  LQ +   P  E+P+N EAA
Sbjct: 71  KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 130

Query: 270 EVLQNNRRLFEQNVQ 284
            +L  +  L+   ++
Sbjct: 131 RILVKDESLYRTILR 145

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 7e-23
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
             +L+ L    P   T              I+      Y  G F     +   YP EPP+
Sbjct: 8   KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQ 67

Query: 212 VKCETPVYHPNIDLEGNVCLNILRED----WKPVLTINSIVYGLQYLFLEPNPEDPLNKE 267
           ++  TP+YHPNID  G +CL++L+      W+P L I +++  +Q L  EPNP+DPL  +
Sbjct: 68  IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 127

Query: 268 AAEVLQNNRRLFEQNVQK 285
            +   + N+  F +N ++
Sbjct: 128 ISSEFKYNKPAFLKNARQ 145

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 90.2 bits (223), Expect = 8e-23
 Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
           +++ + L  +    +P+      +     P+   Y  G ++   ++  +YP + P +   
Sbjct: 6   EMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFC 65

Query: 216 TPVYHPNIDLEGN-VCLNILREDWKPVLTINSIVYGLQYLFL-EPNPEDPLNKEAAEVLQ 273
             + HPN+D     VCL+++ + W P+  + +I        L  PNP DPLN +AA +L 
Sbjct: 66  NRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 125

Query: 274 NNRRLFEQNVQK 285
            +R  F+  +++
Sbjct: 126 ADRVGFDALLRE 137

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 2e-22
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
            L EL  N  +  +    + +DL  ++ LII P +  Y  G F        +YP  PPK+
Sbjct: 7   QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKM 66

Query: 213 KCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEP 258
           K  T ++HPN+D  G+VC++IL              E W P+ T+ +I+  +  +  +P
Sbjct: 67  KFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 125

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 1e-20
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           L +  +     T +    + +D+   +   +II P    Y +  +    + GP YP  PP
Sbjct: 14  LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 73

Query: 211 KVKCETPVYHPNIDLEGN----VCLNILREDWKPVLTINSIVYGLQYLFLEP-NPEDPLN 265
            V+  T +    ++          +++L   W+   +I  ++  L+ L +   N + P  
Sbjct: 74  FVRFVTKINMNGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP 132

Query: 266 KEAA 269
            E  
Sbjct: 133 PEGQ 136

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 78.5 bits (193), Expect = 1e-18
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
           L    +   P++C+    + DD+   K    I+ P    + +  +  S   GPNYP  PP
Sbjct: 13  LEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP 72

Query: 211 KVKCETPVYHPNIDLE-GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
           KV   + +  P ++   G V  +     DWK   T+ +++  L+     P  +     + 
Sbjct: 73  KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKE 132

Query: 269 AE 270
            E
Sbjct: 133 GE 134

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 5e-17
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 156 DLNEL--NLPKTCT-TEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
           +L  L  + P   T  E    + +  + + +       Y   KF   FK    YP + P+
Sbjct: 11  ELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQ 70

Query: 212 VKCETPV--YHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLF 255
           V         HP++   G++CL+IL EDW P L++ S+   +  + 
Sbjct: 71  VMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 116

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 6e-17
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 10/143 (6%)

Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
             D   +  +       E    + L    ++  P+   Y  G +         +P +PP 
Sbjct: 7   KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS 66

Query: 212 VKCETPVYHPNIDLEGNVCLNIL---REDWKPVLTINSIVYGLQYLFLEPNPEDP---LN 265
           +   TP      +    +CL+I     + W P  ++++I+ GL    +E  P       +
Sbjct: 67  IYMITPNGRFKCN--TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETS 124

Query: 266 KEAAEVLQNNRRLFEQNVQKAMR 288
                 L      F    +    
Sbjct: 125 DFTKRQLAVQSLAFNLKDKVFCE 147

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 72.8 bits (178), Expect = 7e-17
 Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
           +L+    N P  CT +  +P+++  +    +  +   Y +  +        +YP +PP V
Sbjct: 6   ELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIV 64

Query: 213 KCET-PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLF 255
                P  H ++   G++CL++L +D+ P L+I+ +V  +  + 
Sbjct: 65  YFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 108

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 8e-16
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 8/106 (7%)

Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKV--GPNYPHEPPKVKCETP-- 217
            K     +   D      + ++      YR   +     +     YP+ PP    +    
Sbjct: 33  LKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSS 92

Query: 218 ---VYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNP 260
                  ++D  G + L  L E   P   +  ++  +  +F +  P
Sbjct: 93  MTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 138

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.5 bits (167), Expect = 7e-15
 Identities = 23/99 (23%), Positives = 29/99 (29%), Gaps = 11/99 (11%)

Query: 173 PDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV-----------YHP 221
           P  LLS    IS  E             V   YP +PP +                    
Sbjct: 52  PQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQE 111

Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNP 260
            ID  G + L IL       + +  +V  L  L  EP  
Sbjct: 112 YIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ 150

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 148 HVCCVFLSDLNELNLPK-TCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYP 206
           +   ++  +L   +L       +  +PD  L   L I  ++        + +F    N+P
Sbjct: 22  YKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK--EGIEYILLNFSFKDNFP 79

Query: 207 HEPPKVKCETPVYHPNIDLEGN-VCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPL 264
            +PP V+   PV      L G  +C+ +L +  W    +I S++  +    ++       
Sbjct: 80  FDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQF 139

Query: 265 NKEAAE-VLQNNRRLFEQNVQ 284
                +  L   ++ +   VQ
Sbjct: 140 GANKNQYNLARAQQSYNSIVQ 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.98
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.73
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.64
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	96.53
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	92.8
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	90.63
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	87.97
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	86.64
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	81.24
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	80.85

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=317.02  Aligned_cols=155  Identities=83%  Similarity=1.409  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHhccCCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCC
Q psy16981        148 HVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG  227 (302)
Q Consensus       148 ~~~~Rl~kEL~eL~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G  227 (302)
                      .+.+||++||++|++++++.+.+++++|+++|+++|||++|+|+||+|+|+|.||++||++||+|+|.|+||||||+.+|
T Consensus         3 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~~G   82 (157)
T d1y8xa1           3 AAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEG   82 (157)
T ss_dssp             HHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEECCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccccc
Confidence            57899999999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCCCcccccccC
Q psy16981        228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK  302 (302)
Q Consensus       228 ~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~~~~f~~~~~  302 (302)
                      .||++++.++|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|+++|++++++++++++.|+||||
T Consensus        83 ~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~~  157 (157)
T d1y8xa1          83 NVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCLK  157 (157)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEETTEEECCCBC
T ss_pred             eeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCCCcCCEecchhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=5.9e-42  Score=290.39  Aligned_cols=142  Identities=33%  Similarity=0.692  Sum_probs=136.5

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +.+||++|+++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.
T Consensus         4 a~rRl~~E~~~l~~~~~~gi~-~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~   82 (149)
T d1z3da1           4 SRRRLMRDFKKLQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYA   82 (149)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHhhCCCCCEE-EEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcC
Confidence            669999999999  6788886 578999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        226 EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       226 ~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      +|.||+++|.+.|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|+++||++++++.
T Consensus        83 ~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks~  148 (149)
T d1z3da1          83 DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW  148 (149)
T ss_dssp             TCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999999875

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=288.03  Aligned_cols=143  Identities=29%  Similarity=0.603  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++|+++|  ++|.++. +.|+++|++.|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+|||||||
T Consensus         2 ~~~kRi~~E~~~l~~~~~~gi~-~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPNCS-AGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEE-EEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhhCCCCCEE-EEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            4688999999999  6888887 578999999999998 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      ++|.||+++|.++|+|+++|.+||.+|+.||.+|++++|+|.+||++|++|+++|.++||+++++++
T Consensus        81 ~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A  147 (148)
T d1y6la_          81 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA  147 (148)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999998875

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.7e-41  Score=286.02  Aligned_cols=143  Identities=34%  Similarity=0.686  Sum_probs=137.5

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +++||++|+++|  ++|.+++ +.|+++|++.|+++| ||++|||+||.|+|+|.||++||++||+|+|.|++|||||+.
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~-~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCS-AGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS   80 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCeE-EEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECC
Confidence            689999999999  6888886 678899999999999 999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        226 EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       226 ~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      +|+||+++|.++|+|++++.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||++++++++
T Consensus        81 ~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A~  147 (147)
T d1z2ua1          81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  147 (147)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998764

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=2.3e-41  Score=286.97  Aligned_cols=143  Identities=27%  Similarity=0.541  Sum_probs=136.7

Q ss_pred             HHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        150 CCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       150 ~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      .+||++|+++|  +++.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~-~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~   82 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIK-AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL   82 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEE-EEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             cHHHHHHHHHHHhCCCCCEE-EEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCC
Confidence            47999999999  4677775 679999999999999 8999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       227 G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      |.||+++|.+.|+|++++.+||.+|++||.+|++++|+|.|||++|++|+++|.++||+++++++++
T Consensus        83 G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~~  149 (149)
T d1j7db_          83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  149 (149)
T ss_dssp             CBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999874

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=8.9e-41  Score=283.82  Aligned_cols=145  Identities=29%  Similarity=0.581  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++|+++|  ++|.++. +.|+++|+++|+++| ||+||||+||+|+|.|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~-~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~   80 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGIT-CWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID   80 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEE-EEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHCcCCCEE-EEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcC
Confidence            5678999999999  6888885 689999999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCC----CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        225 LEGNVCLNILR----EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       225 ~~G~VCL~iL~----e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      .+|.||+++|.    ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+++++++..
T Consensus        81 ~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1          81 SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            99999999996    5799999999999999999999999999999999999999999999999999987653

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=6.1e-41  Score=288.01  Aligned_cols=144  Identities=27%  Similarity=0.516  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ..+++||++|+++|  ++|.++++...+++|+++|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+||||||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTB
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceE
Confidence            46889999999999  68888875444678999999999 8999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHcc
Q psy16981        224 DLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGG  290 (302)
Q Consensus       224 d~~G~VCL~iL~-------------e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~  290 (302)
                      +.+|+||+++|.             +.|+|+++|.+||.+|+.||.+|+++||+|.+||++|++|+++|+++||+++.++
T Consensus        82 ~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k~  161 (164)
T d2ucza_          82 YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS  161 (164)
T ss_dssp             CTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            999999999995             4699999999999999999999999999999999999999999999999999875

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=4.7e-41  Score=286.11  Aligned_cols=143  Identities=29%  Similarity=0.607  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q psy16981        147 FHVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNI  223 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNI  223 (302)
                      ...++||++||++|  ++|.++. +.|+++|+++|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+||||||
T Consensus         5 ~~~~kRl~kEl~~l~~~~~~gi~-v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   83 (151)
T d1zdna1           5 PHIIRLVYKEVTTLTADPPDGIK-VFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV   83 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEE-EEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeE-EEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCcee
Confidence            46789999999999  6788886 589999999999999 8999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHcc
Q psy16981        224 DLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGG  290 (302)
Q Consensus       224 d~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~  290 (302)
                      +.+|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|+++||++++++
T Consensus        84 ~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~  150 (151)
T d1zdna1          84 GANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH  150 (151)
T ss_dssp             CTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999998864

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=7.7e-41  Score=283.66  Aligned_cols=143  Identities=28%  Similarity=0.662  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+.+||++||++|  ++|.++. +.|+++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus         3 ~A~kRl~~El~~l~~~~~~gi~-~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (153)
T d1ayza_           3 PARRRLMRDFKRMKEDAPPGVS-ASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   81 (153)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHhHCCCCCEE-EEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCC
Confidence            3579999999999  6788886 578899999999998 89999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|.++|+++++++.
T Consensus        82 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~  148 (153)
T d1ayza_          82 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW  148 (153)
T ss_dssp             TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999875

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=7.7e-41  Score=283.54  Aligned_cols=145  Identities=28%  Similarity=0.549  Sum_probs=136.7

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE  226 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~  226 (302)
                      +.+||++|+++|  ++|.++.....+++|++.|.++|||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~iigp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~   80 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN   80 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEECCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECCC
Confidence            357999999999  688898766556779999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        227 GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       227 G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      |.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||++++++.++
T Consensus        81 G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~  148 (150)
T d1wzva1          81 GQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  148 (150)
T ss_dssp             CBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            999999995 6899999999999999999999999999999999999999999999999999998764

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=9.1e-41  Score=282.87  Aligned_cols=141  Identities=32%  Similarity=0.569  Sum_probs=134.1

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +.+||++|+++|  +++.++. +.|+++|+++|+++| ||+||||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~-~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGIS-AFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT   80 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEE-EEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT
T ss_pred             HHHHHHHHHHHHhhCCCCCEE-EEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCC
Confidence            468999999999  5778886 578899999999999 999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        226 EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       226 ~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.|||++|+ |+++|+++|+++++++.
T Consensus        81 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~~  145 (146)
T d1i7ka_          81 QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQV  145 (146)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTTC
T ss_pred             CCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999999999995 99999999999999875

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=2.1e-40  Score=280.61  Aligned_cols=143  Identities=32%  Similarity=0.581  Sum_probs=136.0

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +.+||++|+++|  ++|.++.+..++++|+++|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+||||||+.
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   81 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccC
Confidence            568999999999  67888887667888999999999 999999999999999999999999999999999999999998


Q ss_pred             -CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        226 -EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       226 -~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                       +|.+|++++.++|+|++||.+||.+|++||.+|++++|+|.|||++|++|+++|.++||+++++++
T Consensus        82 ~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A  148 (149)
T d1fzya_          82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence             788999999999999999999999999999999999999999999999999999999999999865

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=1e-40  Score=284.09  Aligned_cols=141  Identities=30%  Similarity=0.569  Sum_probs=135.4

Q ss_pred             HHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCC
Q psy16981        151 CVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG  227 (302)
Q Consensus       151 ~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G  227 (302)
                      +||++|+++|  +++.+|. +.|+++|+++|+++| ||++|+|+||+|+|+|.||++||++||+|+|.|+|||||||.+|
T Consensus         6 rRl~~E~~~l~~~~~~g~~-~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~G   84 (152)
T d1jata_           6 KRIIKETEKLVSDPVPGIT-AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG   84 (152)
T ss_dssp             HHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCEE-EEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCCC
Confidence            6899999998  6788886 578999999999999 89999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       228 ~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      .||++++.++|+|+++|.+||.+|++||.+|++++|+|.|||++|.+|+++|.++||+++++.+.
T Consensus        85 ~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~  149 (152)
T d1jata_          85 RICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK  149 (152)
T ss_dssp             CBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred             CeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999998765

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=280.83  Aligned_cols=140  Identities=31%  Similarity=0.597  Sum_probs=132.5

Q ss_pred             HHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCc
Q psy16981        151 CVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN  228 (302)
Q Consensus       151 ~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~  228 (302)
                      +||++||++|  +.+.++.....+++|+++|+++|||++|||+||+|+|.|.||++||++||+|+|.|+||||||+.+|.
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~igp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~   81 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQ   81 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEECCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCCc
Confidence            6899999999  46778866555788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHcc
Q psy16981        229 VCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGG  290 (302)
Q Consensus       229 VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~  290 (302)
                      ||+++|. +.|+|++++.+||.+|++||.+|++++|+|.+||.+|++|++.|.++||++++++
T Consensus        82 icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          82 VCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             BCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             cccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998 5799999999999999999999999999999999999999999999999999875

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=5.1e-40  Score=281.63  Aligned_cols=141  Identities=28%  Similarity=0.608  Sum_probs=131.6

Q ss_pred             HHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCC
Q psy16981        151 CVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG  227 (302)
Q Consensus       151 ~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G  227 (302)
                      .||++|+++|  +++.++.+...+++|+++|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+||||||+.+|
T Consensus         3 ~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G   82 (161)
T d1pzva_           3 LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEG   82 (161)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTTS
T ss_pred             hHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCCC
Confidence            5788999998  67888876544677899999988 99999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCC-------------CCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        228 NVCLNILRE-------------DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       228 ~VCL~iL~e-------------~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      .||+++|..             +|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|.++|+++++++.
T Consensus        83 ~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~  159 (161)
T d1pzva_          83 NVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQ  159 (161)
T ss_dssp             BBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             ccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            999999953             5999999999999999999999999999999999999999999999999999864

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=8.1e-40  Score=279.80  Aligned_cols=143  Identities=29%  Similarity=0.540  Sum_probs=134.6

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCC-----CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccc
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPD-----DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYH  220 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~d-----dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~H  220 (302)
                      +++||++|+++|  ++|.+++ +.|.++     |+++|+++| ||+||||+||+|+|.|.||++||++||+|+|.|+|||
T Consensus         3 a~~Rl~~E~~~~~~~~~~g~~-~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           3 ALSRLAQERKAWRKDHPFGFV-AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCE-EEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHCCCCCeE-EEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            689999999999  6788885 466543     899999999 9999999999999999999999999999999999999


Q ss_pred             ccccCCCcEEeccCC--CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCC
Q psy16981        221 PNIDLEGNVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYI  292 (302)
Q Consensus       221 PNId~~G~VCL~iL~--e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v  292 (302)
                      |||+.+|.||+++|.  ++|+|++||.+||.+|++||.+|++++|+|.|||++|++|+++|.++||+++++++.
T Consensus        82 PnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1          82 PNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             ccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCC
Confidence            999999999999996  589999999999999999999999999999999999999999999999999999875

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=9.6e-40  Score=279.48  Aligned_cols=142  Identities=32%  Similarity=0.633  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      ...+||++||++|  +++.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus         9 ~~~kRl~kEl~~l~~~~~~gi~-~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   87 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMSGDPGIT-AFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEE-EEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhHCCCCCEE-EEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCC
Confidence            4577999999999  5677876 678999999999988 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        225 LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       225 ~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|+ |+.+|+++|+++++.+.
T Consensus        88 ~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~~  153 (156)
T d2e2ca_          88 QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTAQ  153 (156)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999996 66789999999987653

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-39  Score=277.10  Aligned_cols=143  Identities=24%  Similarity=0.476  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHhccC-----CCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        148 HVCCVFLSDLNELN-----LPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       148 ~~~~Rl~kEL~eL~-----lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      .+.+||++|++++.     .+.++. +.++++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||
T Consensus         4 ~a~~Rl~kE~~~l~~~~~~~~~~i~-~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   82 (154)
T d2bepa1           4 IAVQRIKREFKEVLKSEETSKNQIK-VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP   82 (154)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTSEE-EEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCcEE-EEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCC
Confidence            46789999999882     345665 567888999999998 99999999999999999999999999999999999999


Q ss_pred             cccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        222 NIDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       222 NId~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      ||+. +|.||++++.++|+|++||.+||.+|++||.+|++++|+|.+||.+|++|+++|+++||+|+++++
T Consensus        83 ni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A  153 (154)
T d2bepa1          83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  153 (154)
T ss_dssp             TBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9997 899999999999999999999999999999999999999999999999999999999999998764

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=3.1e-39  Score=274.25  Aligned_cols=138  Identities=28%  Similarity=0.499  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID  224 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId  224 (302)
                      .+++||++|++++  +.+.++. +.|+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         4 ~a~~~L~kE~~~l~~~~~~gi~-v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   82 (148)
T d1yrva1           4 RAYLLLHRDFCDLKENNYKGIT-AKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD   82 (148)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTEE-EEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHHCCCCCEE-EEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCcee
Confidence            5778999999999  5788886 579999999999999 89999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeccCC--CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q psy16981        225 L-EGNVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKA  286 (302)
Q Consensus       225 ~-~G~VCL~iL~--e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~  286 (302)
                      . +|.||+++|+  ++|+|++||.+||.+|++||.+|++++|+|.|||++|++|+++|+++||.+
T Consensus        83 ~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          83 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             TTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             cCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            6 8999999995  689999999999999999999999999999999999999999999999975

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=9.4e-39  Score=274.69  Aligned_cols=141  Identities=29%  Similarity=0.571  Sum_probs=127.7

Q ss_pred             HHHHHHHHhcc---------------CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeee
Q psy16981        150 CCVFLSDLNEL---------------NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVK  213 (302)
Q Consensus       150 ~~Rl~kEL~eL---------------~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~  213 (302)
                      ..||+||+++|               +.+.++. +.+.++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+
T Consensus         3 ~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           3 QARLLKELADIQQLQRAHDSEPAATHSTSHGVS-AQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHC----------------CEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             hhHHHHHHHHHHHHhhccccCcccccCCCCCeE-EEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            56777777776               1234554 567788999999999 999999999999999999999999999999


Q ss_pred             EecccccccccC-CCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccC
Q psy16981        214 CETPVYHPNIDL-EGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGY  291 (302)
Q Consensus       214 F~T~I~HPNId~-~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~  291 (302)
                      |.|++|||||+. +|.||++++.+.|+|+++|.+||.+|++||.+|++++|+|.|||++|++|+++|.++|++++++++
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~~a  160 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA  160 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            999999999976 799999999999999999999999999999999999999999999999999999999999998764

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=2.6e-37  Score=265.03  Aligned_cols=139  Identities=27%  Similarity=0.535  Sum_probs=128.0

Q ss_pred             HHHHHHHhcc-CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC-CC
Q psy16981        151 CVFLSDLNEL-NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL-EG  227 (302)
Q Consensus       151 ~Rl~kEL~eL-~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~-~G  227 (302)
                      +||++|+++| +.+..   ++|+ ||+++|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+||||||+. +|
T Consensus         3 rr~~~e~~~l~~~~~~---~~~~-d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G   78 (158)
T d1yf9a1           3 RRREMDYMRLCNSTRK---VYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSG   78 (158)
T ss_dssp             HHHHHHHHHHHSSSSC---EEEC-SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTC
T ss_pred             hHHHHHHHHHhcCCCc---CCCC-CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCcc
Confidence            7899999999 44433   3564 7999999999 999999999999999999999999999999999999999987 79


Q ss_pred             cEEeccCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHccCCC
Q psy16981        228 NVCLNILREDWKPVLTINSIVYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG  293 (302)
Q Consensus       228 ~VCL~iL~e~W~P~~tI~sIL~~-Iq~Ll~~Pn~~dPlN~eAA~~~~~nr~~F~~~vr~~~~~~~v~  293 (302)
                      .||+++|.++|+|.+++.++|.. |+.|+.+|++++|+|.|||++|++|+++|+++||+++++++..
T Consensus        79 ~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~~  145 (158)
T d1yf9a1          79 SVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP  145 (158)
T ss_dssp             BBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred             cccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCCh
Confidence            99999999999999999999975 6788999999999999999999999999999999999987754

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=228.79  Aligned_cols=107  Identities=24%  Similarity=0.487  Sum_probs=98.6

Q ss_pred             HHHHHHHHhcc--CCCCCeEEec-cCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccc--ccccc
Q psy16981        150 CCVFLSDLNEL--NLPKTCTTEF-PNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV--YHPNI  223 (302)
Q Consensus       150 ~~Rl~kEL~eL--~lP~~~~~~~-p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I--~HPNI  223 (302)
                      .+||++|+++|  +++.++.+.. ++++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|++  |||||
T Consensus         5 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv   84 (117)
T d2a7la1           5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV   84 (117)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccC
Confidence            57999999999  6788886543 4578999999999 99999999999999999999999999999999986  99999


Q ss_pred             cCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhc
Q psy16981        224 DLEGNVCLNILREDWKPVLTINSIVYGLQYLFL  256 (302)
Q Consensus       224 d~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~  256 (302)
                      +.+|+||+++|.++|+|++||.+||.+|++||.
T Consensus        85 ~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          85 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            999999999999999999999999999999984

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=3.6e-33  Score=230.00  Aligned_cols=108  Identities=31%  Similarity=0.676  Sum_probs=100.5

Q ss_pred             HHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCC
Q psy16981        151 CVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG  227 (302)
Q Consensus       151 ~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G  227 (302)
                      .||+|||++|  +++.++.+...+++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G   81 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   81 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCC
Confidence            4788999999  67888876666788999999999 89999999999999999999999999999999999999999999


Q ss_pred             cEEeccCC-------------CCCCCcCCHHHHHHHHHHhhcCC
Q psy16981        228 NVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEP  258 (302)
Q Consensus       228 ~VCL~iL~-------------e~W~P~~tI~sIL~~Iq~Ll~~P  258 (302)
                      .||+++|+             ++|+|++||.+||++|++||.+|
T Consensus        82 ~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          82 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             BBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             EEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            99999994             57999999999999999999886

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.98  E-value=1.4e-32  Score=221.81  Aligned_cols=104  Identities=21%  Similarity=0.463  Sum_probs=98.0

Q ss_pred             HHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccc-ccccccCCC
Q psy16981        152 VFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV-YHPNIDLEG  227 (302)
Q Consensus       152 Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I-~HPNId~~G  227 (302)
                      ||+||+++|  ++|.++. +.++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++ +||||+.+|
T Consensus         2 Rl~kEl~~l~~~~~~g~~-~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G   80 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCT-LDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNG   80 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEE-EEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTS
T ss_pred             HHHHHHHHHHhCCCCCEE-EEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCC
Confidence            788899998  6788886 578999999999999 89999999999999999999999999999999985 899999999


Q ss_pred             cEEeccCCCCCCCcCCHHHHHHHHHHhhc
Q psy16981        228 NVCLNILREDWKPVLTINSIVYGLQYLFL  256 (302)
Q Consensus       228 ~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~  256 (302)
                      +||+++|.++|+|++||.+||.+|++||.
T Consensus        81 ~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          81 DICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             eEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999984

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=228.57  Aligned_cols=141  Identities=15%  Similarity=0.223  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhcc--CCCCCeEEeccCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q psy16981        149 VCCVFLSDLNEL--NLPKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL  225 (302)
Q Consensus       149 ~~~Rl~kEL~eL--~lP~~~~~~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~  225 (302)
                      +.+||++|+++|  +++.+++ +.|+++|+++|+++| ||++|||+||.|+|.|.||++||++||+|+|.|+++|||++.
T Consensus         2 A~kRl~kE~~~l~~~p~~g~~-~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g   80 (157)
T d2f4wa1           2 ATQRLKQDYLRIKKDPVPYIC-AEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT   80 (157)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEE-EEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCEE-EEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCC
Confidence            678999999999  6788885 678999999999999 999999999999999999999999999999999999988875


Q ss_pred             CCcE-EeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCC--Ccc-HHHHHHHHhCHHHHHHHHHHHHHcc
Q psy16981        226 EGNV-CLNILREDWKPVLTINSIVYGLQYLFLEPNPED--PLN-KEAAEVLQNNRRLFEQNVQKAMRGG  290 (302)
Q Consensus       226 ~G~V-CL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~d--PlN-~eAA~~~~~nr~~F~~~vr~~~~~~  290 (302)
                      .|.+ |++++.++|+|++||.+||.+|++||.+|+++.  +.+ ..++++|..+...|.++++..++.+
T Consensus        81 ~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~  149 (157)
T d2f4wa1          81 RLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELF  149 (157)
T ss_dssp             CBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred             CeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332 344556889999999999999999999998865  233 4445678888999999999888764

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.97  E-value=4e-32  Score=227.63  Aligned_cols=122  Identities=22%  Similarity=0.439  Sum_probs=106.0

Q ss_pred             HHHHHHHHHhccC---CCCCeEEeccCCC--CceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEeccccccc
Q psy16981        149 VCCVFLSDLNELN---LPKTCTTEFPNPD--DLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPN  222 (302)
Q Consensus       149 ~~~Rl~kEL~eL~---lP~~~~~~~p~~d--dl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPN  222 (302)
                      +..||++||+++.   .|..|.....+++  |+++|+++| ||++|+|+||+|+|.|.||++||++||+|+|.|+|||||
T Consensus         5 ~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~Hpn   84 (136)
T d1jatb_           5 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPC   84 (136)
T ss_dssp             HHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred             hHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccccc
Confidence            4578889998882   3666766555544  499999999 999999999999999999999999999999999999999


Q ss_pred             ccC-CCcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHH
Q psy16981        223 IDL-EGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE  270 (302)
Q Consensus       223 Id~-~G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~  270 (302)
                      |+. +|.||++++. ++|+|++||.+||++|++||.+|+..+.+++++++
T Consensus        85 V~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g~  134 (136)
T d1jatb_          85 VNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGE  134 (136)
T ss_dssp             BCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTC
T ss_pred             cccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            996 6999999886 78999999999999999999999887777776653

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.97  E-value=9e-31  Score=219.86  Aligned_cols=122  Identities=20%  Similarity=0.360  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhcc--CCCCCeEE-ec--cCCCCceEEEEEE-eCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q psy16981        148 HVCCVFLSDLNEL--NLPKTCTT-EF--PNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP  221 (302)
Q Consensus       148 ~~~~Rl~kEL~eL--~lP~~~~~-~~--p~~ddl~~W~v~I-gP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HP  221 (302)
                      .+-.||+|||++|  +++.++.. ..  ++++|+++|+++| ||.+|||+||.|+|+|.||++||++||+|+|.|++|||
T Consensus         5 ~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~Hp   84 (139)
T d2a4da1           5 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN   84 (139)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             chhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccc
Confidence            4567999999999  45555432 22  2345799999999 89999999999999999999999999999999999999


Q ss_pred             cccC-CCcEEeccCC--CCCCCcCCHHHHHHHHHHhhcCC-CCCCCccHHHH
Q psy16981        222 NIDL-EGNVCLNILR--EDWKPVLTINSIVYGLQYLFLEP-NPEDPLNKEAA  269 (302)
Q Consensus       222 NId~-~G~VCL~iL~--e~W~P~~tI~sIL~~Iq~Ll~~P-n~~dPlN~eAA  269 (302)
                      ||+. +|.+|++.+.  ++|+|++||.+||.+|++||.+| |+++|+|+|.+
T Consensus        85 nV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~~  136 (139)
T d2a4da1          85 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  136 (139)
T ss_dssp             TBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             cCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCcC
Confidence            9998 5777776664  58999999999999999999886 88999999853

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-31  Score=229.47  Aligned_cols=138  Identities=16%  Similarity=0.327  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHhccC--C--CCCeEEeccCCCCceEEEEEE-e-CCCcccCCcE-----------EEEEEEeCCCCCCCC
Q psy16981        147 FHVCCVFLSDLNELN--L--PKTCTTEFPNPDDLLSFKLII-S-PDEGFYRSGK-----------FVFSFKVGPNYPHEP  209 (302)
Q Consensus       147 ~~~~~Rl~kEL~eL~--l--P~~~~~~~p~~ddl~~W~v~I-g-P~~tpYeGG~-----------F~f~I~fp~~YP~~P  209 (302)
                      ..+.+||++||++|.  .  ..++..+.+.++|+++|++.| | |++|||+||.           |+|.|.||++||++|
T Consensus         3 ~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~P   82 (162)
T d1zuoa1           3 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP   82 (162)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhc
Confidence            357899999999993  2  245555667788999999999 7 8999999986           999999999999999


Q ss_pred             CeeeEeccccccc-ccCCCcEEeccCC-CCCCCcCCHHHHHHHHHHhhcCCCC--CCCccHHHHHHHHhCHHHHHHHHHH
Q psy16981        210 PKVKCETPVYHPN-IDLEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNP--EDPLNKEAAEVLQNNRRLFEQNVQK  285 (302)
Q Consensus       210 P~V~F~T~I~HPN-Id~~G~VCL~iL~-e~W~P~~tI~sIL~~Iq~Ll~~Pn~--~dPlN~eAA~~~~~nr~~F~~~vr~  285 (302)
                      |+|+|.|+||||| ++.+|.||+++|. ++|+|++||.+||.+|+++|.+|++  +.+.|.+++.+ .++++.|++.||.
T Consensus        83 P~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~-~~~~~~y~~~~~~  161 (162)
T d1zuoa1          83 PFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL-ARAQQSYNSIVQI  161 (162)
T ss_dssp             CEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCH-HHHHHHHHHHHHH
T ss_pred             ceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHH-HHhHHHHHHHHhh
Confidence            9999999999998 5678999999996 5699999999999999999988765  55677776665 4568899999884

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-18  Score=144.51  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=80.0

Q ss_pred             eccCCCCceEEEEEE-eCCCcccCCcEEEE--EEEeCCCCCCCCCeeeEecc-----cccccccCCCcEEeccCCCCCCC
Q psy16981        169 EFPNPDDLLSFKLII-SPDEGFYRSGKFVF--SFKVGPNYPHEPPKVKCETP-----VYHPNIDLEGNVCLNILREDWKP  240 (302)
Q Consensus       169 ~~p~~ddl~~W~v~I-gP~~tpYeGG~F~f--~I~fp~~YP~~PP~V~F~T~-----I~HPNId~~G~VCL~iL~e~W~P  240 (302)
                      ++..+|+...|.+.| |+.+++|+||+|.+  .|.||.+||++||.|.|.+.     ++|||||.+|+||+++|.+.|.|
T Consensus        39 ~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~~W~~~  118 (141)
T d1s1qa_          39 SYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP  118 (141)
T ss_dssp             EEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCTTCBBCCHHHHTCCTT
T ss_pred             eEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECCCCCCcchhhcCCCcc
Confidence            567788889999888 99999999999998  66689999999999988753     78999999999999999866667


Q ss_pred             cCCHHHHHHHHHHhhcCC
Q psy16981        241 VLTINSIVYGLQYLFLEP  258 (302)
Q Consensus       241 ~~tI~sIL~~Iq~Ll~~P  258 (302)
                      ..++.++|..|+.+|.+.
T Consensus       119 ~s~L~~ll~~L~~~f~~e  136 (141)
T d1s1qa_         119 QSDLLGLIQVMIVVFGDE  136 (141)
T ss_dssp             TCCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHhCCC
Confidence            789999999999999763

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.4e-16  Score=134.54  Aligned_cols=92  Identities=22%  Similarity=0.222  Sum_probs=73.0

Q ss_pred             ccCCCCceEEEEEE-eCCCcccCCcE---EEEEEEeCCCCCCCCCeeeEecc-----------cccccccCCCcEEeccC
Q psy16981        170 FPNPDDLLSFKLII-SPDEGFYRSGK---FVFSFKVGPNYPHEPPKVKCETP-----------VYHPNIDLEGNVCLNIL  234 (302)
Q Consensus       170 ~p~~ddl~~W~v~I-gP~~tpYeGG~---F~f~I~fp~~YP~~PP~V~F~T~-----------I~HPNId~~G~VCL~iL  234 (302)
                      +..+|....+.+.+ |.-..+|+||.   |.+.|.||++||+.||.|.|.++           ++|||||.+|+||+++|
T Consensus        45 ~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V~lp~L  124 (152)
T d1uzxa_          45 FTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL  124 (152)
T ss_dssp             EECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCTTSCBCCHHH
T ss_pred             eecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCCCCcEehHHh
Confidence            34445455555556 77778999996   78888999999999999999765           67999999999999999


Q ss_pred             CCCCCCcCCHHHHHHHHHHhhcCCCCC
Q psy16981        235 REDWKPVLTINSIVYGLQYLFLEPNPE  261 (302)
Q Consensus       235 ~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~  261 (302)
                      .+.|.|..+|.++|..|+.+|.+|.+|
T Consensus       125 ~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         125 HCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             HSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence            988889999999999999999887443

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=96.53  E-value=0.00032  Score=57.64  Aligned_cols=49  Identities=31%  Similarity=0.406  Sum_probs=40.3

Q ss_pred             cchhhhhhhhccc--cCCCCCC------------ccccccceecccCCcccccccccccccCC
Q psy16981         59 ASAAQLRITKAEL--ELPTYSG------------SVLLHQGVLLYKGPTYLFGQESGFNQTNT  107 (302)
Q Consensus        59 ~s~~~~r~~~~~~--~~p~~~~------------~~~~~~~~~~~~~~~~~f~~~~~~~~~n~  107 (302)
                      +|||++||+||--  ..|+.+.            .+++.+..+-|.||.|.|.++++.+||..
T Consensus         1 ~~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i~p~~t~Y~gg~f~~~i~fp~~YP~~   63 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHD   63 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTS
T ss_pred             CCHHHHHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEECCCCCCcCCCeEEEEEEecCCCCCC
Confidence            5899999999764  4355544            66678888999999999999999999954

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.15  Score=39.14  Aligned_cols=81  Identities=12%  Similarity=0.117  Sum_probs=49.8

Q ss_pred             EEEEEeCCCcccCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCC
Q psy16981        179 FKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEP  258 (302)
Q Consensus       179 W~v~IgP~~tpYeGG~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~P  258 (302)
                      +.+.+..++.-.......+.|.+|.+||..+|.|...+                    .|-+......++..+..++.+-
T Consensus        52 ~~i~l~~~~~~~~~~~l~L~~~lP~~YP~~~P~i~l~~--------------------~~l~~~~~~~l~~~l~~~~~~~  111 (140)
T d2daxa1          52 FTINMNLDVSDEKMAMFSLACILPFKYPAVLPEITVRS--------------------VLLSRSQQTQLNTDLTAFLQKH  111 (140)
T ss_dssp             EEEEEEEECSTTCEEEEEEEEEECSSTTSSCCCCEEEC--------------------TTSCHHHHHHHHHHHHHHHHHS
T ss_pred             EEEeeccCcccccCceEEEEEEecCcCCCcCCceeccC--------------------CCCCHHHHHHHHHHHHHHHHHh
Confidence            44444323333344568899999999999999987543                    2333334556666666666543


Q ss_pred             CCCCCccHHHHHHHHhCHHHH
Q psy16981        259 NPEDPLNKEAAEVLQNNRRLF  279 (302)
Q Consensus       259 n~~dPlN~eAA~~~~~nr~~F  279 (302)
                      ...++.=-+++..++++-..|
T Consensus       112 ~~Ge~~if~lve~lqe~~~~~  132 (140)
T d2daxa1         112 CHGDVCILNATEWVREHASGY  132 (140)
T ss_dssp             SCSSCCSHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHH
Confidence            445666667777666655544

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.38  Score=36.92  Aligned_cols=68  Identities=15%  Similarity=0.029  Sum_probs=48.7

Q ss_pred             cEEEEEEEeCCCCCCCCCeeeEecccccccccCCCcEEeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCccHHHHHHH
Q psy16981        193 GKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL  272 (302)
Q Consensus       193 G~F~f~I~fp~~YP~~PP~V~F~T~I~HPNId~~G~VCL~iL~e~W~P~~tI~sIL~~Iq~Ll~~Pn~~dPlN~eAA~~~  272 (302)
                      -.+.+.|.+|++||..+|.|...+                    .|-+......+...|..+..+-....|.=-++....
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~--------------------~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~l  127 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS--------------------SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWL  127 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC--------------------SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec--------------------cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            357888999999999999987542                    244445677777788887765445567767777777


Q ss_pred             HhCHHHHH
Q psy16981        273 QNNRRLFE  280 (302)
Q Consensus       273 ~~nr~~F~  280 (302)
                      +++-..|.
T Consensus       128 qe~~~~~l  135 (141)
T d2dawa1         128 QDNSASYF  135 (141)
T ss_dssp             HHTTHHHH
T ss_pred             HHHHHHHH
Confidence            77766553

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=0.37  Score=38.66  Aligned_cols=54  Identities=17%  Similarity=0.333  Sum_probs=35.7

Q ss_pred             EEEEEEeCCCCCCCCCeeeEecc-cccccccCCCcEEeccCC----CCCCCcCCHHHHH
Q psy16981        195 FVFSFKVGPNYPHEPPKVKCETP-VYHPNIDLEGNVCLNILR----EDWKPVLTINSIV  248 (302)
Q Consensus       195 F~f~I~fp~~YP~~PP~V~F~T~-I~HPNId~~G~VCL~iL~----e~W~P~~tI~sIL  248 (302)
                      |.+.|.+|..||..||.|..-.- =--.-.|..|+|||++-.    ..=.|...|.+.|
T Consensus        78 Fd~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWarN~PkfGIaHal  136 (162)
T d2in1a1          78 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             EEEEEECCTTTTTSCCCCBCGGGSSSCSSSCGGGBCCCCTTSHHHHHTTTTSCCHHHHH
T ss_pred             EEEEeccCCCCCCCCcceeccccCCchhhhhcCceeeccccchhhhhhcCCchhHHHHH
Confidence            56677789999999999875210 001123457999998765    2236777887765

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=1.4  Score=32.41  Aligned_cols=24  Identities=29%  Similarity=0.607  Sum_probs=21.0

Q ss_pred             cEEEEEEEeCCCCCCCCCeeeEec
Q psy16981        193 GKFVFSFKVGPNYPHEPPKVKCET  216 (302)
Q Consensus       193 G~F~f~I~fp~~YP~~PP~V~F~T  216 (302)
                      ....+.|.+|++||..+|.+.+..
T Consensus        52 ~~v~L~~~~p~~YP~~~P~i~~~~   75 (115)
T d2daya1          52 VCFTLVLQVPAEYPHEVPQISIRN   75 (115)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             eEEEEEEEcCCCCCCCCCcEEeec
Confidence            568899999999999999998654

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=80.85  E-value=0.13  Score=40.72  Aligned_cols=30  Identities=10%  Similarity=-0.082  Sum_probs=25.0

Q ss_pred             ccccccceecccCCcccccccccccccCCc
Q psy16981         79 SVLLHQGVLLYKGPTYLFGQESGFNQTNTN  108 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~f~~~~~~~~~n~~  108 (302)
                      .+.+-+..+.|.||.|.|.+.++.+||..+
T Consensus        34 ~~iigp~~tpy~gg~f~~~i~fp~~YP~~p   63 (150)
T d1wzva1          34 HALLLPDQPPYHLKAFNLRISFPPEYPFKP   63 (150)
T ss_dssp             EEEECCCSTTGGGEEEEEEEECCTTTTSSC
T ss_pred             EEEECCCCCCccCceeeEEEecCcCCccCC
Confidence            345567778999999999999999999653